Citrus Sinensis ID: 018322
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | 2.2.26 [Sep-21-2011] | |||||||
| Q54ED4 | 482 | Glutamate-rich WD repeat- | yes | no | 0.854 | 0.634 | 0.459 | 9e-71 | |
| Q9BQ67 | 446 | Glutamate-rich WD repeat- | yes | no | 0.885 | 0.710 | 0.437 | 5e-65 | |
| Q810D6 | 446 | Glutamate-rich WD repeat- | yes | no | 0.857 | 0.688 | 0.439 | 1e-62 | |
| Q5XI13 | 445 | Glutamate-rich WD repeat- | yes | no | 0.854 | 0.687 | 0.432 | 9e-62 | |
| Q1JQD2 | 446 | Glutamate-rich WD repeat- | yes | no | 0.851 | 0.683 | 0.426 | 1e-60 | |
| Q9P783 | 480 | Ribosome assembly protein | yes | no | 0.821 | 0.612 | 0.390 | 4e-55 | |
| Q04225 | 511 | Ribosome assembly protein | yes | no | 0.784 | 0.549 | 0.330 | 8e-39 | |
| Q60973 | 425 | Histone-binding protein R | no | no | 0.597 | 0.503 | 0.343 | 4e-25 | |
| Q71UF4 | 425 | Histone-binding protein R | no | no | 0.597 | 0.503 | 0.343 | 4e-25 | |
| Q4R304 | 425 | Histone-binding protein R | N/A | no | 0.597 | 0.503 | 0.343 | 4e-25 |
| >sp|Q54ED4|GRWD1_DICDI Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 267 bits (682), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 148/322 (45%), Positives = 199/322 (61%), Gaps = 16/322 (4%)
Query: 33 PTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYF 92
P KVW+ GVD LEE E L D TAY+ +H+ + WPCLSF ++D LG RN++PHT Y
Sbjct: 68 PKKVWRAGVDPLEEDEVLDYDSTAYDMMHSMSVEWPCLSFHPIKDELGAQRNKYPHTMYL 127
Query: 93 VAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGS 152
VAGTQA++ N + + K + + + + D +D + + DED D D
Sbjct: 128 VAGTQADEAKNNKVIIMKAKQLHKTKHDDEDSDDDEDSDDDEESDDEDDEDKDVD----- 182
Query: 153 GTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P LQL + H G VNRIR+M Q +I A+W+D V +W++ +HL AL ++ET+
Sbjct: 183 --PELQLAFINHNGAVNRIRSMDQQSNIVATWSDNRSVYIWNIANHLKAL-DNETV---- 235
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
AP+ + +PL H EGYA+DW+P GRL TGDCN+ I++ AS++TW D F
Sbjct: 236 APKQT--APLHTISNHSIEGYALDWSPKIAGRLATGDCNNSIFV-TNASESTWKTDTQAF 292
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLA 332
GH+ SVED+QWSP+E VFASCS+D + IWD R K A+T KAH ADVNVISW+R
Sbjct: 293 KGHTESVEDIQWSPSEEKVFASCSIDQTVRIWDIRKPKPAIT-VKAHTADVNVISWSRNV 351
Query: 333 SCLLASGSDDGTFSIHDLRLLK 354
LL SG DDG+F + DLR K
Sbjct: 352 EYLLVSGCDDGSFRVWDLRAFK 373
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9BQ67|GRWD1_HUMAN Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens GN=GRWD1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 150/343 (43%), Positives = 191/343 (55%), Gaps = 26/343 (7%)
Query: 18 AKKGDGSSSSSIPSLPTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVR 76
A+ GD SS P +V+ PG L EGEEL D AY H G PCLSFDIVR
Sbjct: 19 AESGDTSSEG-----PAQVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVR 73
Query: 77 DTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSE 136
D LG R E P T Y AGTQAE N + + ++ N+ G KP SE
Sbjct: 74 DHLGDNRTELPLTLYLCAGTQAESAQSNRLMMLRMHNLHG-------TKPP------PSE 120
Query: 137 SSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWD 194
SD +E+ +D+E+ P L+L V H G +NR+R + + P + W++ G V+V+
Sbjct: 121 GSDEEEEEEDEEDEEERKPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFA 179
Query: 195 LRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCI 254
LR L + E + + + + P+ F GH EG+A+DW+P TGRL+TGDC I
Sbjct: 180 LRRLLQVVEEPQALAAFLRDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNI 239
Query: 255 YLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS--- 311
+LW P +W+VD PF+GH+ SVEDLQWSPTE VFASCS D I IWD R S
Sbjct: 240 HLWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKAC 299
Query: 312 ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354
LT+ AH+ DVNVISW+R LL SG DDG I DLR K
Sbjct: 300 MLTTATAHDGDVNVISWSRREPFLL-SGGDDGALKIWDLRQFK 341
|
Homo sapiens (taxid: 9606) |
| >sp|Q810D6|GRWD1_MOUSE Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 240 bits (612), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 144/328 (43%), Positives = 188/328 (57%), Gaps = 21/328 (6%)
Query: 33 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAY 91
P++V+ PG L EGEEL D AY H G PCLSFDIVRD LG R E P + Y
Sbjct: 29 PSQVYLPGRGPPLSEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLY 88
Query: 92 FVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGG 151
AGTQAE N + + ++ N+ G R PS SE SD DE+ +D+E+
Sbjct: 89 LCAGTQAESAQSNRLMMLRMHNLHGTR-------PS------PSEGSDDDEEDEDEEDEE 135
Query: 152 SGTPILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIV 209
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 136 EQKPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALA 194
Query: 210 GQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP 269
+ + P+ F GH EG+A+DW+P GRL+TGDC ++LW P +WNVD
Sbjct: 195 IFLRDEQARIKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNVHLWTPTEGGSWNVDQ 254
Query: 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV--GKSA-LTSFKAHNADVNVI 326
PF+GH+ SVEDLQWSPTE VFASCS D I IWD R GK+ LT+ AH+ DVNVI
Sbjct: 255 RPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAHDGDVNVI 314
Query: 327 SWNRLASCLLASGSDDGTFSIHDLRLLK 354
SW+R LL SG DDG + DLR K
Sbjct: 315 SWSRREPFLL-SGGDDGALKVWDLRQFK 341
|
Mus musculus (taxid: 10090) |
| >sp|Q5XI13|GRWD1_RAT Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus GN=Grwd1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 237 bits (605), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 142/328 (43%), Positives = 188/328 (57%), Gaps = 22/328 (6%)
Query: 33 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAY 91
P++V+ PG L EGEEL D AY H G PCLSFDIVRD LG R E P + Y
Sbjct: 29 PSQVYLPGRGPPLGEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLY 88
Query: 92 FVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGG 151
AGTQAE N + + ++ N+ G R P++ S+D++D D E + +
Sbjct: 89 LCAGTQAESAQSNRLMMLRMHNLHGTRPP--PSEGSDDEDDEDEEDEEERK--------- 137
Query: 152 SGTPILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIV 209
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 138 ---PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALA 193
Query: 210 GQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP 269
+ + P+ F GH EG+A+DW+P GRL+TGDC I+LW P +WNVD
Sbjct: 194 IFLRDEQARVKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDGGSWNVDQ 253
Query: 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV--GKSA-LTSFKAHNADVNVI 326
PF+GH+ SVEDLQWSPTE VFASCS D I IWD R GK+ LT+ AH+ DVNVI
Sbjct: 254 RPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTAAAHDGDVNVI 313
Query: 327 SWNRLASCLLASGSDDGTFSIHDLRLLK 354
SW+R LL SG DDGT + DLR K
Sbjct: 314 SWSRREPFLL-SGGDDGTLKVWDLRQFK 340
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q1JQD2|GRWD1_BOVIN Glutamate-rich WD repeat-containing protein 1 OS=Bos taurus GN=GRWD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/326 (42%), Positives = 182/326 (55%), Gaps = 21/326 (6%)
Query: 35 KVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFV 93
+V+ PG L EGEEL D AY H G PCLSFDIVRD LG R E P T Y
Sbjct: 31 QVYLPGRGPPLREGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLTLYLC 90
Query: 94 AGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSG 153
AGTQAE N + + ++ N+ G + P P E SD +E+ DD+E+
Sbjct: 91 AGTQAESSQSNRLMMLRMHNLHGTK----PPPP---------EGSDDEEEEDDEEDEEER 137
Query: 154 TPILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQ 211
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 138 KPQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALATF 196
Query: 212 GAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNP 271
+ + P+ F GH EG+A+DW+P GRL+TGDC I+LW P +W+VD P
Sbjct: 197 LRDEQTRMKPIFAFSGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDGGSWHVDQRP 256
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS---ALTSFKAHNADVNVISW 328
F+GH+ SVEDLQWSPTE VFASCS D I IWD R S LT+ AH+ DVNVI+W
Sbjct: 257 FVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVINW 316
Query: 329 NRLASCLLASGSDDGTFSIHDLRLLK 354
+ LL SG DDG + DLR K
Sbjct: 317 SHREPFLL-SGGDDGALKVWDLRQFK 341
|
Bos taurus (taxid: 9913) |
| >sp|Q9P783|RRB1_SCHPO Ribosome assembly protein rrb1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrb1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (547), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 185/330 (56%), Gaps = 36/330 (10%)
Query: 33 PTKV-WQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAY 91
P+K+ W PG K+ E+L DP+ Y LH + WP LSFDI++D+LG R +PH Y
Sbjct: 70 PSKIPWLPG-GKINADEKLVADPSVYEMLHNIQVKWPFLSFDILQDSLGEERRAWPHQMY 128
Query: 92 FVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGG 151
V G+QA + N + V K+S + K +D+ D S++SD +ED
Sbjct: 129 LVGGSQALDSNDNELTVMKLSQLY---------KTQHDENDDASDNSDVEED-------- 171
Query: 152 SGTPILQLRKVAHQGCVNRIR-----AMTQNPHICASWADTGHVQVWDLRSHLNALAESE 206
PIL+ + ++ +G NR+R A + + AS+ +TG V +WD+ HL +L
Sbjct: 172 ---PILEHKSISTKGACNRVRSARRPANSSKESLLASFHETGKVHIWDIAPHLRSLDSPG 228
Query: 207 TIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN 266
+V + SPL HK EGYA+DW+P L++GD + I+L S+ W
Sbjct: 229 VMVSR-----KENSPLYTVNRHKTEGYALDWSPFEYS-LLSGDNANEIFL-TKYSNGGWQ 281
Query: 267 VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SALTSFKAHNADVN 324
D +PF+ H+A+VEDLQWSP+E +VF+SCS DG IWD R + SALT DVN
Sbjct: 282 TDSSPFLSHTAAVEDLQWSPSEKNVFSSCSCDGTFRIWDVRNKQKTSALTVNAHPGVDVN 341
Query: 325 VISWNRLASCLLASGSDDGTFSIHDLRLLK 354
V+SWN LLA+G+D+G +S+ DLR LK
Sbjct: 342 VLSWNTRVPNLLATGADNGVWSVWDLRSLK 371
|
Involved in regulation of L3 expression and stability and plays a role in early 60S ribosomal subunit assembly. May be required for proper assembly of pre-ribosomal particles during early ribosome biogenesis, presumably by targeting L3 onto the 35S precursor rRNA. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q04225|RRB1_YEAST Ribosome assembly protein RRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 166/312 (53%), Gaps = 31/312 (9%)
Query: 48 EELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIG 107
E L+ DPT Y LH ++ WPCL+ D++ DTLG R +P + TQ+ + N +
Sbjct: 109 EVLEADPTVYEMLHNVNMPWPCLTLDVIPDTLGSERRNYPQSILLTTATQSSRKKENELM 168
Query: 108 VFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGC 167
V +SN++ + L+ D++ + D++++ P+++ + +
Sbjct: 169 VLALSNLA---KTLL--------------KDDNEGEDDEEDDEDDVDPVIENENIPLRDT 211
Query: 168 VNRIR----AMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
NR++ A++ + A+ ++ G V +++L A + G P+ S + P+
Sbjct: 212 TNRLKVSPFAISNQEVLTATMSENGDVYIYNLAPQSKAFSTP----GYQIPK-SAKRPIH 266
Query: 224 KFGGHKD-EGYAIDWNP-ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF-IGHSASVE 280
H + EGY +DW+P I TG L++GDC+ IY + + + W D PF + ++ S+E
Sbjct: 267 TVKNHGNVEGYGLDWSPLIKTGALLSGDCSGQIYFTQRHT-SRWVTDKQPFTVSNNKSIE 325
Query: 281 DLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNADVNVISWNRLASCLLASG 339
D+QWS TE VFA+ DG+I IWDTR K S KA N DVNVISW+ LLASG
Sbjct: 326 DIQWSRTESTVFATAGCDGYIRIWDTRSKKHKPAISVKASNTDVNVISWSDKIGYLLASG 385
Query: 340 SDDGTFSIHDLR 351
D+GT+ + DLR
Sbjct: 386 DDNGTWGVWDLR 397
|
Involved in regulation of L3 expression and stability and plays a role in early 60S ribosomal subunit assembly. May be required for proper assembly of pre-ribosomal particles during early ribosome biogenesis, presumably by targeting L3 onto the 35S precursor rRNA. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q60973|RBBP7_MOUSE Histone-binding protein RBBP7 OS=Mus musculus GN=Rbbp7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 121/239 (50%), Gaps = 25/239 (10%)
Query: 128 NDDEDVDSESSDSDEDSDDDEEGGSGTPILQLR---KVAHQGCVNRIRAMTQNPHICASW 184
NDD D+ DSD+ E GG G+ ++ K+ H+G VNR R M QNPHI A+
Sbjct: 87 NDDAQFDASHCDSDKG----EFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATK 142
Query: 185 ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ-SPLVKFGGHKDEGYAIDWNPITTG 243
+ V V+D H P S + +P ++ GH+ EGY + WN +G
Sbjct: 143 TPSSDVLVFDYTKH------------PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 190
Query: 244 RLVTGDCNSCIYLWEPASDATWN--VDPNP-FIGHSASVEDLQWSPTEPDVFASCSVDGH 300
L++ + + LW+ + VD F GHSA VED+ W +F S + D
Sbjct: 191 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 250
Query: 301 IAIWDTRVGKSALTS--FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357
+ IWDTR ++ S AH A+VN +S+N + +LA+GS D T ++ DLR LK++L
Sbjct: 251 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 309
|
Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the type B histone acetyltransferase (HAT) complex, which is required for chromatin assembly following DNA replication; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex. Mus musculus (taxid: 10090) |
| >sp|Q71UF4|RBBP7_RAT Histone-binding protein RBBP7 OS=Rattus norvegicus GN=Rbbp7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 121/239 (50%), Gaps = 25/239 (10%)
Query: 128 NDDEDVDSESSDSDEDSDDDEEGGSGTPILQLR---KVAHQGCVNRIRAMTQNPHICASW 184
NDD D+ DSD+ E GG G+ ++ K+ H+G VNR R M QNPHI A+
Sbjct: 87 NDDAQFDASHCDSDKG----EFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATK 142
Query: 185 ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ-SPLVKFGGHKDEGYAIDWNPITTG 243
+ V V+D H P S + +P ++ GH+ EGY + WN +G
Sbjct: 143 TPSSDVLVFDYTKH------------PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 190
Query: 244 RLVTGDCNSCIYLWEPASDATWN--VDPNP-FIGHSASVEDLQWSPTEPDVFASCSVDGH 300
L++ + + LW+ + VD F GHSA VED+ W +F S + D
Sbjct: 191 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 250
Query: 301 IAIWDTRVGKSALTS--FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357
+ IWDTR ++ S AH A+VN +S+N + +LA+GS D T ++ DLR LK++L
Sbjct: 251 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 309
|
Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the type B histone acetyltransferase (HAT) complex, which is required for chromatin assembly following DNA replication; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex. Rattus norvegicus (taxid: 10116) |
| >sp|Q4R304|RBBP7_MACFA Histone-binding protein RBBP7 OS=Macaca fascicularis GN=RBBP7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 121/239 (50%), Gaps = 25/239 (10%)
Query: 128 NDDEDVDSESSDSDEDSDDDEEGGSGTPILQLR---KVAHQGCVNRIRAMTQNPHICASW 184
NDD D+ DSD+ E GG G+ ++ K+ H+G VNR R M QNPHI A+
Sbjct: 87 NDDAQFDASHCDSDKG----EFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATK 142
Query: 185 ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ-SPLVKFGGHKDEGYAIDWNPITTG 243
+ V V+D H P S + +P ++ GH+ EGY + WN +G
Sbjct: 143 TPSSDVLVFDYTKH------------PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSG 190
Query: 244 RLVTGDCNSCIYLWEPASDATWN--VDPNP-FIGHSASVEDLQWSPTEPDVFASCSVDGH 300
L++ + + LW+ + VD F GHSA VED+ W +F S + D
Sbjct: 191 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 250
Query: 301 IAIWDTRVGKSALTS--FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357
+ IWDTR ++ S AH A+VN +S+N + +LA+GS D T ++ DLR LK++L
Sbjct: 251 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 309
|
Core histone-binding subunit that may target chromatin remodeling factors, histone acetyltransferases and histone deacetylases to their histone substrates in a manner that is regulated by nucleosomal DNA. Component of several complexes which regulate chromatin metabolism. These include the type B histone acetyltransferase (HAT) complex, which is required for chromatin assembly following DNA replication; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodeling; and the PRC2/EED-EZH2 complex, which promotes repression of homeotic genes during development; and the NURF (nucleosome remodeling factor) complex. Macaca fascicularis (taxid: 9541) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | ||||||
| 225444932 | 474 | PREDICTED: glutamate-rich WD repeat-cont | 0.983 | 0.742 | 0.822 | 1e-165 | |
| 255573609 | 476 | WD-repeat protein, putative [Ricinus com | 0.977 | 0.735 | 0.776 | 1e-153 | |
| 449435854 | 475 | PREDICTED: glutamate-rich WD repeat-cont | 0.986 | 0.743 | 0.754 | 1e-147 | |
| 356512379 | 475 | PREDICTED: glutamate-rich WD repeat-cont | 0.986 | 0.743 | 0.775 | 1e-143 | |
| 224081134 | 443 | predicted protein [Populus trichocarpa] | 0.854 | 0.690 | 0.764 | 1e-141 | |
| 449532697 | 465 | PREDICTED: glutamate-rich WD repeat-cont | 0.958 | 0.737 | 0.741 | 1e-140 | |
| 356525166 | 472 | PREDICTED: LOW QUALITY PROTEIN: glutamat | 0.972 | 0.737 | 0.719 | 1e-137 | |
| 224093750 | 415 | predicted protein [Populus trichocarpa] | 0.874 | 0.754 | 0.736 | 1e-132 | |
| 297836302 | 470 | transducin family protein [Arabidopsis l | 0.918 | 0.7 | 0.706 | 1e-131 | |
| 15224798 | 469 | transducin-like protein [Arabidopsis tha | 0.916 | 0.699 | 0.709 | 1e-130 |
| >gi|225444932|ref|XP_002282252.1| PREDICTED: glutamate-rich WD repeat-containing protein 1 [Vitis vinifera] gi|297738673|emb|CBI27918.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 292/355 (82%), Positives = 323/355 (90%), Gaps = 3/355 (0%)
Query: 1 MVRSIKNPKKAKRKNKVAKKGDGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSL 60
MVRSIKNPKKAKRKNK +KKG+GSSS +PSLPTKVWQPGVDKLEEGEELQCDP+AYNSL
Sbjct: 1 MVRSIKNPKKAKRKNKGSKKGEGSSS--VPSLPTKVWQPGVDKLEEGEELQCDPSAYNSL 58
Query: 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRE 120
HAFH+GWPCLSFDIVRD+LGLVR+EFPHTAYFVAGTQAEK SWNSIG+FK+SNISGK+RE
Sbjct: 59 HAFHVGWPCLSFDIVRDSLGLVRSEFPHTAYFVAGTQAEKASWNSIGIFKLSNISGKKRE 118
Query: 121 LVPN-KPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPH 179
LVP K + DD D+D + SDSDEDS+++E+GGSGTPILQ+RKVAH+GCVNRIRAMTQNPH
Sbjct: 119 LVPTTKSTGDDSDMDGDGSDSDEDSENEEDGGSGTPILQMRKVAHEGCVNRIRAMTQNPH 178
Query: 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239
ICASWADTGHVQVWD SHLNALAESET QG+ NQ+PLVKFGGHKDEGYAIDW+P
Sbjct: 179 ICASWADTGHVQVWDFSSHLNALAESETDANQGSTPAINQAPLVKFGGHKDEGYAIDWSP 238
Query: 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299
+ G+LVTGDC +CIYLWEP SDATW VD NPFIGH+ASVEDLQWSPTE VFASCSVDG
Sbjct: 239 VVPGKLVTGDCKNCIYLWEPTSDATWKVDTNPFIGHTASVEDLQWSPTEVHVFASCSVDG 298
Query: 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354
+IAIWDTR+G+S SFKAHNADVNV+SWNRLASC+LASGSDDGTFSI DLRLLK
Sbjct: 299 NIAIWDTRLGRSPAASFKAHNADVNVLSWNRLASCMLASGSDDGTFSIRDLRLLK 353
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573609|ref|XP_002527727.1| WD-repeat protein, putative [Ricinus communis] gi|223532868|gb|EEF34640.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 274/353 (77%), Positives = 308/353 (87%), Gaps = 3/353 (0%)
Query: 1 MVRSIKNPKKAKRKNKVAKKGDGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSL 60
MVRSIKNPKKAKRKNK +K+GD +SSSSIP++PTKVWQPGVDKLEEGEEL+CDP+AYNSL
Sbjct: 1 MVRSIKNPKKAKRKNKGSKQGD-ASSSSIPTMPTKVWQPGVDKLEEGEELECDPSAYNSL 59
Query: 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRE 120
H FHIGWPCLSFDIV D LGL+R EFPHT YFVAGTQA+K S N+IG+FKVSNISGKRRE
Sbjct: 60 HGFHIGWPCLSFDIVHDKLGLLRTEFPHTVYFVAGTQADKASSNTIGIFKVSNISGKRRE 119
Query: 121 LVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHI 180
LVP K ++ D ++D++SSDSDEDS+D+E GGS P+LQ+R VAHQGCVNRIRAM QNPHI
Sbjct: 120 LVPAKTTDGDAEIDTDSSDSDEDSEDEEHGGSRAPVLQIRNVAHQGCVNRIRAMAQNPHI 179
Query: 181 CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240
CASWADTGHVQ+WD SHLNAL+ESE QG P NQ+PLVKFGGHKDEGYAIDW+P
Sbjct: 180 CASWADTGHVQIWDFSSHLNALSESEAD-RQGGPSAVNQAPLVKFGGHKDEGYAIDWSPR 238
Query: 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300
TGRLV+GDC +CI+LWEP S ATWNV PF+GH+ASVEDLQWSPTE VFASCSVDG
Sbjct: 239 VTGRLVSGDCKNCIHLWEP-SGATWNVGSVPFVGHAASVEDLQWSPTEDAVFASCSVDGS 297
Query: 301 IAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353
IAIWD R+G++ SFKAHNADVNVISWNRLAS +LASGSDDGTFSI DLRLL
Sbjct: 298 IAIWDIRLGRTPAISFKAHNADVNVISWNRLASVMLASGSDDGTFSIRDLRLL 350
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435854|ref|XP_004135709.1| PREDICTED: glutamate-rich WD repeat-containing protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 267/354 (75%), Positives = 299/354 (84%), Gaps = 1/354 (0%)
Query: 1 MVRSIKNPKKAKRKNKVAKKGDGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSL 60
MVRSIKN KKAKRK+K + G +SSSSIPS+P KVW+PGVDKLEEGEELQCDPTAYNSL
Sbjct: 1 MVRSIKNRKKAKRKSKGSSNGVAASSSSIPSVPAKVWRPGVDKLEEGEELQCDPTAYNSL 60
Query: 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRE 120
HAF+I WP LSFDIVRDTLGLVR EFPHT YFVAGTQAEK SWNSIG++K+SNISGKRRE
Sbjct: 61 HAFNISWPSLSFDIVRDTLGLVRTEFPHTIYFVAGTQAEKASWNSIGIYKISNISGKRRE 120
Query: 121 LVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHI 180
L+P+KP DD D+DS+SSDSDED + +E GG P+ QLRKVAH+GCVNRIRAM QNPHI
Sbjct: 121 LLPSKPVTDDTDMDSDSSDSDEDDEGEENGGYKLPVWQLRKVAHEGCVNRIRAMQQNPHI 180
Query: 181 CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240
CASWAD GHVQ+WD SHLN LA SE V G V NQ+PL F HKDEGYA+DW+P+
Sbjct: 181 CASWADGGHVQIWDFSSHLNTLAGSEPTVSPGDSSVFNQAPLTLF-KHKDEGYALDWSPL 239
Query: 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300
GRL++GDC S I+LWEP+S +WNVD PF+GHSASVEDLQWSPTEP VF+SCS DG+
Sbjct: 240 VPGRLLSGDCKSFIHLWEPSSATSWNVDTAPFVGHSASVEDLQWSPTEPHVFSSCSADGN 299
Query: 301 IAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354
+AIWD R GKS SFKAHNADVNVISWNRLASC+LASGSDDGTFSIHDLRLLK
Sbjct: 300 VAIWDVRSGKSPAASFKAHNADVNVISWNRLASCMLASGSDDGTFSIHDLRLLK 353
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512379|ref|XP_003524897.1| PREDICTED: glutamate-rich WD repeat-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 276/356 (77%), Positives = 303/356 (85%), Gaps = 3/356 (0%)
Query: 1 MVRSIKNPKKAKRKNKVAKKGDGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSL 60
M R IK+ +KAK K KV+KK GSSSS P +P KVWQPGVDKLEEGEELQCDP+AYNSL
Sbjct: 1 MTRGIKHRQKAKSKKKVSKKESGSSSSLAPEIPAKVWQPGVDKLEEGEELQCDPSAYNSL 60
Query: 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRE 120
HAFHIGWPCLSFDI+RD+LGLVR EFPHT YF+AGTQAEKPSWNSIG+FKVSNI+GKRRE
Sbjct: 61 HAFHIGWPCLSFDILRDSLGLVRKEFPHTVYFMAGTQAEKPSWNSIGIFKVSNITGKRRE 120
Query: 121 LVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHI 180
VP K DD ++D E SDSD+DS+D+E G G P LQLRKVAHQGCVNRIR+M QNPHI
Sbjct: 121 PVP-KLGTDDTEMDGEDSDSDDDSEDEEGGAQG-PSLQLRKVAHQGCVNRIRSMPQNPHI 178
Query: 181 CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240
CA+WADTGHVQVWDL SHLNALAESET QG V NQ PL KF HKDEGYAIDW+P+
Sbjct: 179 CAAWADTGHVQVWDLNSHLNALAESETEGVQGVAAVFNQDPLYKFK-HKDEGYAIDWSPL 237
Query: 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300
GRL +GDCN+CIYLWEP S TWNVD PF GH+ASVEDLQWSPTEPDVFASCSVDG+
Sbjct: 238 VPGRLASGDCNNCIYLWEPTSAGTWNVDNAPFTGHTASVEDLQWSPTEPDVFASCSVDGN 297
Query: 301 IAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356
IAIWDTR+GKS SFKAHNADVNV+SWNRLASC+LASGSDDGT SI DLRLLKV+
Sbjct: 298 IAIWDTRLGKSPAASFKAHNADVNVMSWNRLASCMLASGSDDGTISIRDLRLLKVQ 353
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081134|ref|XP_002306305.1| predicted protein [Populus trichocarpa] gi|222855754|gb|EEE93301.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 250/327 (76%), Positives = 283/327 (86%)
Query: 32 LPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAY 91
+PTKVWQPGVDKL E EEL+CDPTAYNSLHAFHIGWPCLSFD+VRD+LGL+R +FPHT Y
Sbjct: 1 MPTKVWQPGVDKLGEEEELECDPTAYNSLHAFHIGWPCLSFDVVRDSLGLLRTDFPHTVY 60
Query: 92 FVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGG 151
FVAGTQAEKP WNSIG+FKVSN+SGK+RELVP+K + D D+D+++SDSDEDS+D+EEGG
Sbjct: 61 FVAGTQAEKPDWNSIGIFKVSNVSGKQRELVPSKTTAGDSDMDTDNSDSDEDSEDEEEGG 120
Query: 152 SGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQ 211
S TP+LQLRKVAH+GC+NRIRAMTQNPHICASW+D G+VQ+WD +HLNALAESET V +
Sbjct: 121 SATPVLQLRKVAHRGCINRIRAMTQNPHICASWSDAGYVQIWDFSTHLNALAESETEVPR 180
Query: 212 GAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNP 271
GA V NQ+PL F GHKDEGYAIDW+P GRLVTGDC +CI+LWE S ATWNVD P
Sbjct: 181 GASSVFNQAPLFNFKGHKDEGYAIDWSPRVAGRLVTGDCKNCIHLWESTSGATWNVDATP 240
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRL 331
F GH+ASVEDLQWS TE VFASCSVDGHIAIWD R+GKS FKAHNADVNVISWNRL
Sbjct: 241 FTGHTASVEDLQWSSTEDHVFASCSVDGHIAIWDARLGKSPAIYFKAHNADVNVISWNRL 300
Query: 332 ASCLLASGSDDGTFSIHDLRLLKVRLV 358
AS +LASGSDDGTFSI DLRLL + V
Sbjct: 301 ASVMLASGSDDGTFSIRDLRLLSPKSV 327
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449532697|ref|XP_004173317.1| PREDICTED: glutamate-rich WD repeat-containing protein 1-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/344 (74%), Positives = 289/344 (84%), Gaps = 1/344 (0%)
Query: 11 AKRKNKVAKKGDGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCL 70
++ K+K + G +SSSSIPS+P KVW+PGVDKLEEGEELQCDPTAYNSLHAF+I WP L
Sbjct: 1 SQEKSKGSSNGVAASSSSIPSVPAKVWRPGVDKLEEGEELQCDPTAYNSLHAFNISWPSL 60
Query: 71 SFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDD 130
SFDIVRDTLGLVR EFPHT YFVAGTQAEK SWNSIG++K+SNISGKRREL+P+KP DD
Sbjct: 61 SFDIVRDTLGLVRTEFPHTIYFVAGTQAEKASWNSIGIYKISNISGKRRELLPSKPVTDD 120
Query: 131 EDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHV 190
D+DS+SSDSDED + +E GG P+ QLRKVAH+GCVNRIRAM QNPHICASWAD GHV
Sbjct: 121 TDMDSDSSDSDEDDEGEENGGYKLPVWQLRKVAHEGCVNRIRAMQQNPHICASWADGGHV 180
Query: 191 QVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC 250
Q+WD SHLN LA SE V G V NQ+PL F HKDEGYA+DW+P+ GRL++GDC
Sbjct: 181 QIWDFSSHLNTLAGSEPTVSPGDSSVFNQAPLTLF-KHKDEGYALDWSPLVPGRLLSGDC 239
Query: 251 NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310
S I+LWEP+S +WNVD PF+GHSASVEDLQWSPTEP VF+SCS DG++AIWD R GK
Sbjct: 240 KSFIHLWEPSSATSWNVDTAPFVGHSASVEDLQWSPTEPHVFSSCSADGNVAIWDVRSGK 299
Query: 311 SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354
S SFKAHNADVNVISWNRLASC+LASGSDDGTFSIHDLRLLK
Sbjct: 300 SPAASFKAHNADVNVISWNRLASCMLASGSDDGTFSIHDLRLLK 343
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525166|ref|XP_003531198.1| PREDICTED: LOW QUALITY PROTEIN: glutamate-rich WD repeat-containing protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 256/356 (71%), Positives = 286/356 (80%), Gaps = 8/356 (2%)
Query: 1 MVRSIKNPKKAKRKNKVAKKGDGSSSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSL 60
M R IK+ R+ +KK GSSSS P +P KVWQPGVDKLEEGEELQCDP+AYNSL
Sbjct: 1 MTRGIKH-----RQKAKSKKKGGSSSSLAPEIPAKVWQPGVDKLEEGEELQCDPSAYNSL 55
Query: 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRE 120
HAFHIGWPCLSFDI+RD+LGLVR EFPHT YF+AGTQAEKPSWNSIG+FKVSNI+GKRRE
Sbjct: 56 HAFHIGWPCLSFDILRDSLGLVRTEFPHTVYFMAGTQAEKPSWNSIGIFKVSNITGKRRE 115
Query: 121 LVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPI--LQLRKVAHQGCVNRIRAMTQNP 178
VP ++D E +S D+ ++DE + LQLRKVAHQGCVNRIR+M QNP
Sbjct: 116 PVPKLGTDDTEMDGEDSDSDDDSEEEDEGVLTFXFFSHLQLRKVAHQGCVNRIRSMPQNP 175
Query: 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238
HICA+WADTGHVQVWDL SHLN LAE+ET QG V NQ PL KF HKDEGYAIDW+
Sbjct: 176 HICAAWADTGHVQVWDLNSHLNVLAETETEGVQGVAAVFNQDPLYKFK-HKDEGYAIDWS 234
Query: 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD 298
P+ G+L +GDCN+CIYLWEP S TWNVD PFIGH+ASVEDLQWSPTE VFASCSVD
Sbjct: 235 PLVPGKLASGDCNNCIYLWEPTSAGTWNVDNAPFIGHTASVEDLQWSPTESHVFASCSVD 294
Query: 299 GHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354
G+IAIWDTR+GKS SFKAHNADVNV+SWNRLASC+LASGSDDGT SI DLRLLK
Sbjct: 295 GNIAIWDTRLGKSPAASFKAHNADVNVMSWNRLASCMLASGSDDGTISIRDLRLLK 350
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224093750|ref|XP_002309975.1| predicted protein [Populus trichocarpa] gi|222852878|gb|EEE90425.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/326 (73%), Positives = 267/326 (81%), Gaps = 13/326 (3%)
Query: 33 PTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYF 92
PTKVWQPGVD LEEGEEL+CDPTAYNSLHAFHIGWPCLSFD+VRD+LGL+R +FPH+ YF
Sbjct: 1 PTKVWQPGVDNLEEGEELECDPTAYNSLHAFHIGWPCLSFDVVRDSLGLLRTDFPHSVYF 60
Query: 93 VAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGS 152
VAGTQAE P WNSIG+FK+SN+SGKR SDSDEDS+D+EEGGS
Sbjct: 61 VAGTQAENPDWNSIGIFKISNVSGKRHN-------------SDNDSDSDEDSEDEEEGGS 107
Query: 153 GTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P+LQLRKVAH GCVNRIRAM QNPHICASW+D G+VQ+W+ +HLNALAESET V +G
Sbjct: 108 AAPVLQLRKVAHSGCVNRIRAMIQNPHICASWSDAGYVQIWNFSTHLNALAESETEVPRG 167
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
V NQ+PL F GHKDEGYAIDW+P TGRLVTGDC SCI+LWEP S ATWNVD PF
Sbjct: 168 GSSVFNQAPLFNFKGHKDEGYAIDWSPRVTGRLVTGDCKSCIHLWEPTSGATWNVDATPF 227
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLA 332
GH+ASVED+QWSPTE VFASCSVDGHIAIWD R+GKS SFKAHNADVNV+SWNRLA
Sbjct: 228 TGHTASVEDIQWSPTEDHVFASCSVDGHIAIWDARLGKSPAISFKAHNADVNVLSWNRLA 287
Query: 333 SCLLASGSDDGTFSIHDLRLLKVRLV 358
S +LASGSDDGTFSI DLRLL + V
Sbjct: 288 SVMLASGSDDGTFSIRDLRLLSPKSV 313
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836302|ref|XP_002886033.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297331873|gb|EFH62292.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 233/330 (70%), Positives = 269/330 (81%), Gaps = 1/330 (0%)
Query: 25 SSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRN 84
SSS IPS+PT+VWQPGVD LE+GEELQCDP+AYNSLH FH+GWPCLSFDI+ D LGL R
Sbjct: 20 SSSEIPSIPTRVWQPGVDTLEDGEELQCDPSAYNSLHGFHVGWPCLSFDILGDKLGLNRT 79
Query: 85 EFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144
EFPHT Y VAGTQAEK + NSIG+FK++N+SGKRR++VP +N D+ D + D +
Sbjct: 80 EFPHTLYMVAGTQAEKAAHNSIGLFKITNVSGKRRDVVPKTLANGDDMEDEDDDDDSDSD 139
Query: 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAE 204
DDD + S TP +Q+R+VAH GCVNRIRAM QN HIC SWAD+GHVQVWD+ SHLNALAE
Sbjct: 140 DDDGDEASKTPNIQVRRVAHHGCVNRIRAMPQNSHICVSWADSGHVQVWDMSSHLNALAE 199
Query: 205 SETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT 264
SET G V NQ+PLV F GHKDEGYAIDW+P T GRL++GDC S I+LWEPAS +
Sbjct: 200 SETEGKDGTSPVLNQAPLVNFSGHKDEGYAIDWSPATAGRLLSGDCKSMIHLWEPAS-GS 258
Query: 265 WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324
W VDP PF GH+ASVEDLQWSP E +VFASCSVDG +A+WD R+GKS SFKAHNADVN
Sbjct: 259 WAVDPIPFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADVN 318
Query: 325 VISWNRLASCLLASGSDDGTFSIHDLRLLK 354
VISWNRLASC+LASGSDDGTFSI DLRL+K
Sbjct: 319 VISWNRLASCMLASGSDDGTFSIRDLRLIK 348
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15224798|ref|NP_179544.1| transducin-like protein [Arabidopsis thaliana] gi|13877611|gb|AAK43883.1|AF370506_1 putative WD-40 repeat protein [Arabidopsis thaliana] gi|4191784|gb|AAD10153.1| putative WD-40 repeat protein [Arabidopsis thaliana] gi|22136272|gb|AAM91214.1| putative WD-40 repeat protein [Arabidopsis thaliana] gi|330251799|gb|AEC06893.1| transducin-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/330 (70%), Positives = 269/330 (81%), Gaps = 2/330 (0%)
Query: 25 SSSSIPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRN 84
SSS IPS+PT+VWQPGVD LE+GEELQCDP+AYNSLH FH+GWPCLSFDI+ D LGL R
Sbjct: 20 SSSEIPSIPTRVWQPGVDTLEDGEELQCDPSAYNSLHGFHVGWPCLSFDILGDKLGLNRT 79
Query: 85 EFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144
EFPHT Y VAGTQAEK + NSIG+FK++N+SGKRR++VP K + ED D + D +
Sbjct: 80 EFPHTLYMVAGTQAEKAAHNSIGLFKITNVSGKRRDVVP-KTFGNGEDEDEDDEDDSDSD 138
Query: 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAE 204
DDD + S TP +Q+R+VAH GCVNRIRAM QN HIC SWAD+GHVQVWD+ SHLNALAE
Sbjct: 139 DDDGDEASKTPNIQVRRVAHHGCVNRIRAMPQNSHICVSWADSGHVQVWDMSSHLNALAE 198
Query: 205 SETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT 264
SET G V NQ+PLV F GHKDEGYAIDW+P T GRL++GDC S I+LWEPAS +
Sbjct: 199 SETEGKDGTSPVLNQAPLVNFSGHKDEGYAIDWSPATAGRLLSGDCKSMIHLWEPAS-GS 257
Query: 265 WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324
W VDP PF GH+ASVEDLQWSP E +VFASCSVDG +A+WD R+GKS SFKAHNADVN
Sbjct: 258 WAVDPIPFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADVN 317
Query: 325 VISWNRLASCLLASGSDDGTFSIHDLRLLK 354
VISWNRLASC+LASGSDDGTFSI DLRL+K
Sbjct: 318 VISWNRLASCMLASGSDDGTFSIRDLRLIK 347
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | ||||||
| TAIR|locus:2050388 | 469 | AT2G19540 "AT2G19540" [Arabido | 0.905 | 0.690 | 0.687 | 2.7e-123 | |
| DICTYBASE|DDB_G0291566 | 482 | grwd1 "glutamate-rich WD repea | 0.854 | 0.634 | 0.444 | 3.5e-68 | |
| FB|FBgn0022288 | 456 | l(2)09851 "lethal (2) 09851" [ | 0.539 | 0.423 | 0.502 | 9.8e-66 | |
| UNIPROTKB|Q9BQ67 | 446 | GRWD1 "Glutamate-rich WD repea | 0.553 | 0.443 | 0.463 | 8.8e-63 | |
| RGD|1310649 | 445 | Grwd1 "glutamate-rich WD repea | 0.553 | 0.444 | 0.463 | 2.9e-62 | |
| UNIPROTKB|F1RL85 | 445 | GRWD1 "Uncharacterized protein | 0.553 | 0.444 | 0.453 | 1.6e-61 | |
| UNIPROTKB|E2RBY0 | 440 | GRWD1 "Uncharacterized protein | 0.553 | 0.45 | 0.448 | 2.9e-60 | |
| ZFIN|ZDB-GENE-030131-9844 | 452 | grwd1 "glutamate-rich WD repea | 0.849 | 0.672 | 0.413 | 6.4e-60 | |
| UNIPROTKB|Q1JQD2 | 446 | GRWD1 "Glutamate-rich WD repea | 0.553 | 0.443 | 0.439 | 7.8e-60 | |
| MGI|MGI:2141989 | 446 | Grwd1 "glutamate-rich WD repea | 0.857 | 0.688 | 0.414 | 7.3e-59 |
| TAIR|locus:2050388 AT2G19540 "AT2G19540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1212 (431.7 bits), Expect = 2.7e-123, P = 2.7e-123
Identities = 224/326 (68%), Positives = 255/326 (78%)
Query: 29 IPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPH 88
IPS+PT+VWQPGVD LE+GEELQCDP+AYNSLH FH+GWPCLSFDI+ D LGL R EFPH
Sbjct: 24 IPSIPTRVWQPGVDTLEDGEELQCDPSAYNSLHGFHVGWPCLSFDILGDKLGLNRTEFPH 83
Query: 89 TAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNXXXXXXXXXXXXXXXXXXXX 148
T Y VAGTQAEK + NSIG+FK++N+SGKRR++VP N
Sbjct: 84 TLYMVAGTQAEKAAHNSIGLFKITNVSGKRRDVVPKTFGNGEDEDEDDEDDSDSDDDDGD 143
Query: 149 XGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETI 208
S TP +Q+R+VAH GCVNRIRAM QN HIC SWAD+GHVQVWD+ SHLNALAESET
Sbjct: 144 EA-SKTPNIQVRRVAHHGCVNRIRAMPQNSHICVSWADSGHVQVWDMSSHLNALAESETE 202
Query: 209 VGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD 268
G V NQ+PLV F GHKDEGYAIDW+P T GRL++GDC S I+LWEPAS +W VD
Sbjct: 203 GKDGTSPVLNQAPLVNFSGHKDEGYAIDWSPATAGRLLSGDCKSMIHLWEPAS-GSWAVD 261
Query: 269 PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328
P PF GH+ASVEDLQWSP E +VFASCSVDG +A+WD R+GKS SFKAHNADVNVISW
Sbjct: 262 PIPFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADVNVISW 321
Query: 329 NRLASCLLASGSDDGTFSIHDLRLLK 354
NRLASC+LASGSDDGTFSI DLRL+K
Sbjct: 322 NRLASCMLASGSDDGTFSIRDLRLIK 347
|
|
| DICTYBASE|DDB_G0291566 grwd1 "glutamate-rich WD repeat-containing protein 1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 143/322 (44%), Positives = 190/322 (59%)
Query: 33 PTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYF 92
P KVW+ GVD LEE E L D TAY+ +H+ + WPCLSF ++D LG RN++PHT Y
Sbjct: 68 PKKVWRAGVDPLEEDEVLDYDSTAYDMMHSMSVEWPCLSFHPIKDELGAQRNKYPHTMYL 127
Query: 93 VAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGS 152
VAGTQA++ N + + K ++L K +
Sbjct: 128 VAGTQADEAKNNKVIIMKA-------KQLHKTKHDDEDSDDDEDSDDDEESDDEDDEDKD 180
Query: 153 GTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P LQL + H G VNRIR+M Q +I A+W+D V +W++ +HL AL ++ET+
Sbjct: 181 VDPELQLAFINHNGAVNRIRSMDQQSNIVATWSDNRSVYIWNIANHLKAL-DNETV---- 235
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
AP+ + +PL H EGYA+DW+P GRL TGDCN+ I++ AS++TW D F
Sbjct: 236 APKQT--APLHTISNHSIEGYALDWSPKIAGRLATGDCNNSIFVTN-ASESTWKTDTQAF 292
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLA 332
GH+ SVED+QWSP+E VFASCS+D + IWD R K A+T KAH ADVNVISW+R
Sbjct: 293 KGHTESVEDIQWSPSEEKVFASCSIDQTVRIWDIRKPKPAIT-VKAHTADVNVISWSRNV 351
Query: 333 SCLLASGSDDGTFSIHDLRLLK 354
LL SG DDG+F + DLR K
Sbjct: 352 EYLLVSGCDDGSFRVWDLRAFK 373
|
|
| FB|FBgn0022288 l(2)09851 "lethal (2) 09851" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 101/201 (50%), Positives = 119/201 (59%)
Query: 155 PILQLRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGA 213
P + V HQGCVNR+RA N ASW++ G V +WDL L A+ E+ + Q
Sbjct: 150 PQMTCALVKHQGCVNRVRARRLGNSVYAASWSELGRVNIWDLTQPLQAV-ENAQLAKQY- 207
Query: 214 PQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI 273
+ S P+ FGGH+ EG+AIDW+P G L TGDC I++W P D TW VD P
Sbjct: 208 -EQSEARPVFTFGGHQQEGFAIDWSPSADGVLATGDCRRDIHVWTPVEDGTWKVDQRPLA 266
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG--KSA-LTSFKAHNADVNVISWNR 330
GHS SVEDLQWSP E V ASCSVD I IWD R K+ LT AH +DVNVISWNR
Sbjct: 267 GHSQSVEDLQWSPNERSVLASCSVDKTIRIWDCRASPQKACMLTCEDAHQSDVNVISWNR 326
Query: 331 LASCLLASGSDDGTFSIHDLR 351
+ASG DDG I DLR
Sbjct: 327 NEP-FIASGGDDGYLHIWDLR 346
|
|
| UNIPROTKB|Q9BQ67 GRWD1 "Glutamate-rich WD repeat-containing protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 480 (174.0 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 95/205 (46%), Positives = 123/205 (60%)
Query: 155 PILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + E + +
Sbjct: 139 PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVEEPQALAAFL 197
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
+ + P+ F GH EG+A+DW+P TGRL+TGDC I+LW P +W+VD PF
Sbjct: 198 RDEQAQMKPIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLWTPTDGGSWHVDQRPF 257
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTSFKAHNADVNVISWN 329
+GH+ SVEDLQWSPTE VFASCS D I IWD R S LT+ AH+ DVNVISW+
Sbjct: 258 VGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVISWS 317
Query: 330 RLASCLLASGSDDGTFSIHDLRLLK 354
R LL SG DDG I DLR K
Sbjct: 318 RREPFLL-SGGDDGALKIWDLRQFK 341
|
|
| RGD|1310649 Grwd1 "glutamate-rich WD repeat containing 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 95/205 (46%), Positives = 125/205 (60%)
Query: 155 PILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 138 PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALAIFL 196
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
+ + P+ F GH EG+A+DW+P GRL+TGDC I+LW P +WNVD PF
Sbjct: 197 RDEQARVKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDGGSWNVDQRPF 256
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV--GKSA-LTSFKAHNADVNVISWN 329
+GH+ SVEDLQWSPTE VFASCS D I IWD R GK+ LT+ AH+ DVNVISW+
Sbjct: 257 VGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTAAAHDGDVNVISWS 316
Query: 330 RLASCLLASGSDDGTFSIHDLRLLK 354
R LL SG DDGT + DLR K
Sbjct: 317 RREPFLL-SGGDDGTLKVWDLRQFK 340
|
|
| UNIPROTKB|F1RL85 GRWD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 469 (170.2 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 93/205 (45%), Positives = 122/205 (59%)
Query: 155 PILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 138 PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALATFL 196
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
+ + P+ F GH EG+A+DW+P GRL+TGDC I+LW P +W+VD PF
Sbjct: 197 RDEQARVKPIFAFSGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDSGSWHVDQRPF 256
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTSFKAHNADVNVISWN 329
+GH+ SVEDLQWSPTE VFASCS D I IWD R S LT+ AHN DVNVISW+
Sbjct: 257 VGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTPAAHNGDVNVISWS 316
Query: 330 RLASCLLASGSDDGTFSIHDLRLLK 354
R LL SG DDG + DLR K
Sbjct: 317 RQEPFLL-SGGDDGALKVWDLRQFK 340
|
|
| UNIPROTKB|E2RBY0 GRWD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 464 (168.4 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 92/205 (44%), Positives = 123/205 (60%)
Query: 155 PILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 133 PQLELAMVPHYGGINRVRVSWLGEEP-VAGIWSEKGQVEVFALRRLLQVVDDPQALATFL 191
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
+ + P+ F GH EG+A+DW+P +GRL+TGDC I+LW P +W+VD PF
Sbjct: 192 RDEQARVKPIFTFAGHMGEGFALDWSPRVSGRLLTGDCQKNIHLWTPTDGGSWHVDQRPF 251
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTSFKAHNADVNVISWN 329
+GH+ SVEDLQWSPTE VFASCS D I IWD R S LT+ AH+ DVNVI+W+
Sbjct: 252 MGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTTSAHDGDVNVINWS 311
Query: 330 RLASCLLASGSDDGTFSIHDLRLLK 354
R LL SG DDG I DLR K
Sbjct: 312 RREPFLL-SGGDDGALKIWDLRQFK 335
|
|
| ZFIN|ZDB-GENE-030131-9844 grwd1 "glutamate-rich WD repeat containing 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 132/319 (41%), Positives = 177/319 (55%)
Query: 35 KVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVA 94
KV+ PG+ L+ GEEL+ D +AY H G PCLSFD+V D G R +FP + A
Sbjct: 42 KVYVPGLQPLQPGEELEMDHSAYRMYHECQTGAPCLSFDVVLDGEGDRREQFPLSMVLCA 101
Query: 95 GTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGGSGT 154
GTQA+ N + V ++ N+ G ++ +K S+
Sbjct: 102 GTQADTALSNRLIVMRMHNLQGTEKKKDEDKSSDEESDEDEDDEDEDKK----------- 150
Query: 155 PILQLRKVAHQGCVNRIRAMTQNPH-ICASWADTGHVQVWDLRSHLNALAESETIVGQGA 213
P L+L + H G +NR+R + + A W++ G V+++DLR L A+ S T +
Sbjct: 151 PQLELAMMPHYGGINRVRVTQRGEQTLAAVWSEKGQVEIFDLRLQLEAVHNS-TAMSAFI 209
Query: 214 PQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI 273
Q +PL F GH EG+AIDW+P GR+V+GDC I++WEP TW +D PF
Sbjct: 210 KQEKEATPLFSFAGHMSEGFAIDWSPKVPGRMVSGDCKKNIHVWEPQEGGTWKIDQRPFS 269
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSFKAHNADVNVISWNRLA 332
HS SVEDLQWSPTE VFASCSVD I IWD R S L++ +AH++DVNVISWNR
Sbjct: 270 SHSKSVEDLQWSPTEATVFASCSVDQSIRIWDIRAPPNSMLSANEAHSSDVNVISWNRTE 329
Query: 333 SCLLASGSDDGTFSIHDLR 351
+L SG DDG + DLR
Sbjct: 330 PFIL-SGGDDGLLKVWDLR 347
|
|
| UNIPROTKB|Q1JQD2 GRWD1 "Glutamate-rich WD repeat-containing protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 459 (166.6 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 90/205 (43%), Positives = 121/205 (59%)
Query: 155 PILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 139 PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALATFL 197
Query: 213 APQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF 272
+ + P+ F GH EG+A+DW+P GRL+TGDC I+LW P +W+VD PF
Sbjct: 198 RDEQTRMKPIFAFSGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDGGSWHVDQRPF 257
Query: 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTSFKAHNADVNVISWN 329
+GH+ SVEDLQWSPTE VFASCS D I IWD R S LT+ AH+ DVNVI+W+
Sbjct: 258 VGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVINWS 317
Query: 330 RLASCLLASGSDDGTFSIHDLRLLK 354
LL SG DDG + DLR K
Sbjct: 318 HREPFLL-SGGDDGALKVWDLRQFK 341
|
|
| MGI|MGI:2141989 Grwd1 "glutamate-rich WD repeat containing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 136/328 (41%), Positives = 179/328 (54%)
Query: 33 PTKVWQPGVDK-LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAY 91
P++V+ PG L EGEEL D AY H G PCLSFDIVRD LG R E P + Y
Sbjct: 29 PSQVYLPGRGPPLSEGEELVMDEEAYVLYHRAQTGAPCLSFDIVRDHLGDNRTELPLSLY 88
Query: 92 FVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNXXXXXXXXXXXXXXXXXXXXXGG 151
AGTQAE N + + ++ N+ G R P++ S+
Sbjct: 89 LCAGTQAESAQSNRLMMLRMHNLHGTRPS--PSEGSDDDEEDEDEEDEEEQK-------- 138
Query: 152 SGTPILQLRKVAHQGCVNRIRA--MTQNPHICASWADTGHVQVWDLRSHLNALAESETIV 209
P L+L V H G +NR+R + + P + W++ G V+V+ LR L + + + +
Sbjct: 139 ---PQLELAMVPHYGGINRVRVSWLGEEP-VAGVWSEKGQVEVFALRRLLQVVDDPQALA 194
Query: 210 GQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP 269
+ + P+ F GH EG+A+DW+P GRL+TGDC ++LW P +WNVD
Sbjct: 195 IFLRDEQARIKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNVHLWTPTEGGSWNVDQ 254
Query: 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV--GKSA-LTSFKAHNADVNVI 326
PF+GH+ SVEDLQWSPTE VFASCS D I IWD R GK+ LT+ AH+ DVNVI
Sbjct: 255 RPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAHDGDVNVI 314
Query: 327 SWNRLASCLLASGSDDGTFSIHDLRLLK 354
SW+R LL SG DDG + DLR K
Sbjct: 315 SWSRREPFLL-SGGDDGALKVWDLRQFK 341
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 358 | |||
| pfam12265 | 73 | pfam12265, CAF1C_H4-bd, Histone-binding protein RB | 3e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-11 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-08 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-08 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 1e-06 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 1e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 6e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.004 |
| >gnl|CDD|221499 pfam12265, CAF1C_H4-bd, Histone-binding protein RBBP4 or subunit C of CAF1 complex | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 3e-18
Identities = 29/75 (38%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 45 EEGEEL--QCDPTAYNSLHAFHIGWPCLSFDIVRDTL-GLVRNEFPHTAYFVAGTQAEKP 101
E EL + DP Y+ LH + WP LSFD + D L G R HT + GTQ
Sbjct: 1 NEEYELWKKNDPFLYDMLHTHALEWPSLSFDWLPDLLKGDNRYP--HTQRLLLGTQTSGQ 58
Query: 102 SWNSIGVFKVSNISG 116
N + V KVS S
Sbjct: 59 EQNYLLVAKVSLPSK 73
|
The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six. Length = 73 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 1e-16
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 30/185 (16%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
H VN + + +S D G +++WDLR+ +
Sbjct: 133 GHTDWVNSVAFSPDGTFVASSSQD-GTIKLWDLRT---------------------GKCV 170
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDL 282
GH E ++ ++P +L++ + I LW+ ++ GH V +
Sbjct: 171 ATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGT----LRGHENGVNSV 225
Query: 283 QWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDD 342
+SP + AS S DG I +WD R G+ + + H V ++W+ LASGS D
Sbjct: 226 AFSPD-GYLLASGSEDGTIRVWDLRTGEC-VQTLSGHTNSVTSLAWSPD-GKRLASGSAD 282
Query: 343 GTFSI 347
GT I
Sbjct: 283 GTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 4e-13
Identities = 46/193 (23%), Positives = 72/193 (37%), Gaps = 30/193 (15%)
Query: 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
H G V + + D G ++VWDL L
Sbjct: 8 HTGGVTCVAFSPDGKLLATGSGD-GTIKVWDL---------------------ETGELLR 45
Query: 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283
GH + + T L +G + I LW+ + GH++ V +
Sbjct: 46 TLKGHTGPVRDVAASADGT-YLASGSSDKTIRLWDLETGEC----VRTLTGHTSYVSSVA 100
Query: 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDG 343
+SP + +S S D I +WD GK LT+ + H VN ++++ + +AS S DG
Sbjct: 101 FSPDGR-ILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPDGT-FVASSSQDG 157
Query: 344 TFSIHDLRLLKVR 356
T + DLR K
Sbjct: 158 TIKLWDLRTGKCV 170
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-12
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD---ATWNVDPNPFIGHSASVED 281
GH D ++ ++P + + + I LW+ + AT GH+ V
Sbjct: 131 LRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVAT-------LTGHTGEVNS 182
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD 341
+ +SP S S DG I +WD GK L + + H VN ++++ LLASGS+
Sbjct: 183 VAFSPDGEK-LLSSSSDGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSP-DGYLLASGSE 239
Query: 342 DGTFSIHDLR 351
DGT + DLR
Sbjct: 240 DGTIRVWDLR 249
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (156), Expect = 2e-11
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 8/143 (5%)
Query: 217 SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS 276
+ + GH + ++ ++P + I LW+ + + GH+
Sbjct: 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST----LAGHT 198
Query: 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-NADVNVISWNRLASCL 335
V L +SP + AS S DG I +WD GK ++ H ++ V+ S + L
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPD---GSL 255
Query: 336 LASGSDDGTFSIHDLRLLKVRLV 358
LASGS DGT + DLR L
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLR 278
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.6 bits (153), Expect = 4e-11
Identities = 58/233 (24%), Positives = 91/233 (39%), Gaps = 29/233 (12%)
Query: 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWA 185
S D + SS D + G I L H V + + + +
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE--GHSESVTSLAFSPDGKLLASGSS 175
Query: 186 DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245
G +++WDLR+ PL GH D ++ ++P +
Sbjct: 176 LDGTIKLWDLRT---------------------GKPLSTLAGHTDPVSSLAFSPDGGLLI 214
Query: 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305
+G + I LW+ + T + + GHS SV +SP + AS S DG I +WD
Sbjct: 215 ASGSSDGTIRLWDLS---TGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWD 269
Query: 306 TRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRLV 358
R S L + H++ V ++++ LLASGS DGT + DL K+
Sbjct: 270 LRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSS 321
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 8e-08
Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 30/144 (20%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
H G VN + + +S + G +++WDL + L
Sbjct: 175 GHTGEVNSVAFSPDGEKLLSS-SSDGTIKLWDLST---------------------GKCL 212
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVT-GDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
GH++ ++ ++P G L+ G + I +W+ + GH+ SV
Sbjct: 213 GTLRGHENGVNSVAFSP--DGYLLASGSEDGTIRVWDLRTGECVQT----LSGHTNSVTS 266
Query: 282 LQWSPTEPDVFASCSVDGHIAIWD 305
L WSP AS S DG I IWD
Sbjct: 267 LAWSPDGK-RLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.6 bits (127), Expect = 8e-08
Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 26/186 (13%)
Query: 171 IRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD 230
+ + + + + AS + G +++WDLRS S L GH
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSS--------------------SSLLRTLSGHSS 285
Query: 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD 290
++ ++P L +G + + LW+ + + GH V L +SP
Sbjct: 286 SVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKL--LSSLTLKGHEGPVSSLSFSPDGSL 342
Query: 291 VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350
+ + S DG I +WD R GK T N V +S++ +++SGS DGT + DL
Sbjct: 343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHSN--VLSVSFSP-DGRVVSSGSTDGTVRLWDL 399
Query: 351 RLLKVR 356
+
Sbjct: 400 STGSLL 405
|
Length = 466 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 1e-06
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-------KSALTSFKAHNADVNVI 326
GH++S+ DLQ++P ++ AS S D I +W+ K K H +++I
Sbjct: 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131
Query: 327 SWNRLASCLLASGSDDGTFSIHDL 350
WN + ++ S D +I D+
Sbjct: 132 DWNPMNYYIMCSSGFDSFVNIWDI 155
|
Length = 568 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
Query: 231 EGYAID--WNPITTGRLVTGDCNSCIYLWE-PASDATWNVDPN--PFIGHSASVEDLQWS 285
EG ID +NP +L T + I W P T N+ GH+ V + +
Sbjct: 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFH 134
Query: 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTF 345
P+ +V AS D + +WD GK A+ K H+ + + WN L LL + S D
Sbjct: 135 PSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQITSLEWN-LDGSLLCTTSKDKKL 192
Query: 346 SIHDLRLLKV 355
+I D R +
Sbjct: 193 NIIDPRDGTI 202
|
Length = 493 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 2e-04
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305
GH+ V + +SP + AS S DG + +WD
Sbjct: 7 LKGHTGPVTSVAFSPDGN-LLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 2e-04
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305
GH+ V + +SP AS S DG I +WD
Sbjct: 8 LKGHTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 6e-04
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 212 GAPQVSNQ---SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE-PASDATWNV 267
GA ++ NQ P++K GH + +NP + L +G + I +WE P +D +
Sbjct: 54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE 113
Query: 268 DPNP---FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313
+P GH + + W+P + S D + IWD K A
Sbjct: 114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF 162
|
Length = 568 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 34.3 bits (79), Expect = 0.004
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 313 LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349
L + K H V ++++ LLASGSDDGT + D
Sbjct: 4 LRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.97 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.97 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.96 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.95 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.95 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.95 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.95 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.94 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.94 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.93 | |
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.93 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.92 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.92 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.91 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.91 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.91 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.91 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.9 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.9 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.9 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.9 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.89 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.89 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.89 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.89 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.89 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.88 | |
| PTZ00420 | 568 | coronin; Provisional | 99.88 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.88 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.88 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.88 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.88 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.87 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.87 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.86 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.86 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.86 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.86 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.86 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.86 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.86 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.86 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.85 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.85 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.85 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.85 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.85 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.83 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.83 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.83 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.83 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.82 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.82 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.82 | |
| PF12265 | 74 | CAF1C_H4-bd: Histone-binding protein RBBP4 or subu | 99.82 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.82 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.82 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.81 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.81 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.81 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.81 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.8 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.8 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.8 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.79 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.79 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.78 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.77 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.77 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.77 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.76 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.75 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.75 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.74 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.74 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.74 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.74 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.73 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.73 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.72 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.72 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.72 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.72 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.72 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.71 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.71 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.71 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.7 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.69 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.68 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.68 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.68 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.68 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.68 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.67 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.66 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.66 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.66 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.65 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.65 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.65 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.64 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.64 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.64 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.63 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.63 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.63 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.62 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.6 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.58 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.57 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.57 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.57 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.56 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.56 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.54 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.54 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.54 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.52 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.49 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.49 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.46 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.45 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.43 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.41 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.4 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.38 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.37 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.34 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.34 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.33 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.32 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.32 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.32 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.3 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.29 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.29 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.28 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.28 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.28 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.26 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.25 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.24 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.23 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.23 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.23 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.22 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.22 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.21 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.2 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.2 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.2 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.19 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.18 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.18 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.17 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.17 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.16 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.15 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.15 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.14 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.12 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.09 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.08 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.07 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.05 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.05 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.03 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.03 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.03 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.02 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.02 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.99 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.97 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.96 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.95 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.9 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.84 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.83 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.82 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.77 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.74 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.73 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.72 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.71 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.68 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.67 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.64 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.64 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.63 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.61 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.61 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.59 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.58 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.57 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.54 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.53 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.51 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.46 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.45 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.44 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.43 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.41 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.4 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.36 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.34 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.33 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.3 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.22 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.2 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.18 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.18 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.15 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.12 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.11 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.1 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.09 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.08 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.07 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.02 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.0 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.93 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.89 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.79 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.77 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.7 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.66 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.65 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.64 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.63 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.61 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.6 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.57 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.55 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.54 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.54 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.53 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.52 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.5 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.48 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.45 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.45 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.43 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.4 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.38 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.38 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.37 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.31 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.29 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.25 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.25 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.2 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.07 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.06 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.04 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.99 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.94 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.94 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.88 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.84 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.82 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.44 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.36 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.35 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.35 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.29 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.16 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.05 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.01 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.95 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.92 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.91 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.9 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.82 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.8 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.78 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.74 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.67 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 95.56 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.51 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.5 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.3 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.22 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.16 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.15 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.1 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.09 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.02 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.83 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 94.73 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.69 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 94.69 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.63 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.63 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.6 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.49 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.47 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 94.43 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 94.22 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.88 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 93.79 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.73 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.69 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 93.59 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 93.59 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.5 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 93.47 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 93.43 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 93.26 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 93.06 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.75 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.51 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 92.39 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.21 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 92.12 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 91.87 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 91.69 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 91.54 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 91.52 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.22 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 90.95 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 90.89 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 90.65 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 90.27 | |
| PRK10115 | 686 | protease 2; Provisional | 89.97 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 89.41 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 89.31 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.14 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 88.91 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 86.99 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 86.98 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.95 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 86.83 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 86.33 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 85.8 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 85.78 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 85.61 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 84.97 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 84.24 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 84.21 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 83.74 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 83.44 | |
| PRK10115 | 686 | protease 2; Provisional | 83.13 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 83.01 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 82.93 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 82.7 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 82.12 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 81.91 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 81.75 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 81.54 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 81.5 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 81.47 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 81.24 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 80.34 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 80.15 |
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=454.73 Aligned_cols=304 Identities=54% Similarity=0.949 Sum_probs=266.7
Q ss_pred CCCCCCeeeeCCcc-cCCCCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEE
Q 018322 29 IPSLPTKVWQPGVD-KLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIG 107 (358)
Q Consensus 29 ~~~~~~~~~~p~~~-~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~ 107 (358)
++....++|+||.. +|++||+|++||++|.|+|.++++|||||||++||.+|.+|++||++.|+|+|||+.....|.|.
T Consensus 31 i~~d~~~~~lpg~~~~l~~~EeL~~DpsaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~ 110 (440)
T KOG0302|consen 31 IEEDGAQVYLPGMSRPLGDDEELVADPSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELM 110 (440)
T ss_pred cccccceeeccCCCCCCCCCceEecCHHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceE
Confidence 34444789999954 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCC-CcEEEEEeC
Q 018322 108 VFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQN-PHICASWAD 186 (358)
Q Consensus 108 i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~ 186 (358)
||+++||.+++... +.++.++++|++++ +.|++....++|.+.|||++.++.+ ..++|++++
T Consensus 111 vlkl~nl~~t~~~~------------~gd~~~~~eddedD-----~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse 173 (440)
T KOG0302|consen 111 VLKLSNLHKTRNPN------------DGDGEDEEEDDEDD-----RKPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSE 173 (440)
T ss_pred EEEeeeeecccCCc------------cCCCCCccccchhh-----ccccccccccccccccceeeecccCCcceeeeecc
Confidence 99999999988732 11111111111111 4899999999999999999999985 679999999
Q ss_pred CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcc
Q 018322 187 TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN 266 (358)
Q Consensus 187 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~ 266 (358)
.|.|+||++..+++.+......... ....|++++.+|+.++|+|+|||...|.|+||+|-+.|++|...+ +.|.
T Consensus 174 ~G~V~Vw~l~~~l~~l~~~~~~~~~-----s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g~W~ 247 (440)
T KOG0302|consen 174 NGRVQVWDLAPHLNALSEPGLEVKD-----SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-GSWK 247 (440)
T ss_pred cCcEEEEEchhhhhhhcCccccccc-----cccCceEEecccCccceeeecccccccccccCccccceEeeeecc-Ccee
Confidence 9999999999988877766554433 257899999999999999999999888999999999999999988 8999
Q ss_pred cCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCE
Q 018322 267 VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNADVNVISWNRLASCLLASGSDDGTF 345 (358)
Q Consensus 267 ~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i 345 (358)
+...+|.+|+.+|.+|+|||++.++|||||.||+|+|||+|++. .+....++|.++||.|+||... .+||+|++||++
T Consensus 248 vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~ 326 (440)
T KOG0302|consen 248 VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTL 326 (440)
T ss_pred ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc-ceeeecCCCceE
Confidence 99999999999999999999999999999999999999999963 3455569999999999999999 599999999999
Q ss_pred EEEeCCCCCCC
Q 018322 346 SIHDLRLLKVR 356 (358)
Q Consensus 346 ~iwDlr~~~~~ 356 (358)
+|||||+++..
T Consensus 327 ~iwDLR~~~~~ 337 (440)
T KOG0302|consen 327 SIWDLRQFKSG 337 (440)
T ss_pred EEEEhhhccCC
Confidence 99999998753
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-49 Score=350.94 Aligned_cols=288 Identities=30% Similarity=0.529 Sum_probs=235.6
Q ss_pred CCCCCCeeeeCCcccCCCCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEE
Q 018322 29 IPSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGV 108 (358)
Q Consensus 29 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i 108 (358)
..+++.++|+.-++ +|||.+.+++|+|||||+||+||........|.. ++|++||++++..+|+|+|
T Consensus 15 ~i~Eey~~WKkNtp------------~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~-~rliLGthTs~~~~n~L~i 81 (422)
T KOG0264|consen 15 QINEEYKIWKKNTP------------FLYDLVITHALEWPSLTVQWLPDVTKPEEKDFSK-QRLILGTHTSGSEQNYLVI 81 (422)
T ss_pred cccchhhHHhhcCc------------HHHHHhhhccccccceEEEEcCCcccccCCCcee-EEEEEEeecCCCCccEEEE
Confidence 45667899999877 9999999999999999999999955444455554 8999999999999999999
Q ss_pred EEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCC--CCC-CeEEEEEecCCCceeEEEEcCCCCcEEEEEe
Q 018322 109 FKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGG--SGT-PILQLRKVAHQGCVNRIRAMTQNPHICASWA 185 (358)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s 185 (358)
.++ .|+...... + + ...+.+.++.++ ... .+-....+.|.|.||++|++|+++.++||++
T Consensus 82 A~v-~lp~~~~~~----------~--~----~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t 144 (422)
T KOG0264|consen 82 ASV-QLPTDDAQF----------E--D----KHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKT 144 (422)
T ss_pred Eee-cCCCccccc----------c--c----ccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecC
Confidence 998 555443322 1 0 011122222111 113 3344678899999999999999999999999
Q ss_pred CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCC-
Q 018322 186 DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT- 264 (358)
Q Consensus 186 ~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~- 264 (358)
..+.|+|||..++.......+ ...|...+.||+.++++|+|++...|.|++|+.|++|++||++..+.
T Consensus 145 ~~~dv~Vfd~tk~~s~~~~~~-----------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 145 SSGDVYVFDYTKHPSKPKASG-----------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CCCCEEEEEeccCCCcccccc-----------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC
Confidence 999999999998655443221 25777899999999999999999999999999999999999987544
Q ss_pred --cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC-CCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC
Q 018322 265 --WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV-GKSALTSFKAHNADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 265 --~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~-~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~ 341 (358)
.......+.+|...|++++|+|.+..+|++++.|+.+.|||+|+ ..++.....+|.+.|+|++|+|.++.+|||||.
T Consensus 214 ~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~ 293 (422)
T KOG0264|consen 214 DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA 293 (422)
T ss_pred CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC
Confidence 23334568899999999999999999999999999999999996 244667789999999999999999899999999
Q ss_pred CCCEEEEeCCCCCCCC
Q 018322 342 DGTFSIHDLRLLKVRL 357 (358)
Q Consensus 342 Dg~i~iwDlr~~~~~l 357 (358)
|++|++||+|+++.++
T Consensus 294 D~tV~LwDlRnL~~~l 309 (422)
T KOG0264|consen 294 DKTVALWDLRNLNKPL 309 (422)
T ss_pred CCcEEEeechhcccCc
Confidence 9999999999998876
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=236.15 Aligned_cols=171 Identities=23% Similarity=0.337 Sum_probs=156.8
Q ss_pred eEEEEEecCCCceeEEEEcCC-CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
.+...+.+|.+.|.++.|+|. ...-+|||+.||+|++|++.. ..++..+.+|...|..
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~---------------------e~~l~~l~gH~~RVs~ 266 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ---------------------ETPLQDLEGHLARVSR 266 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC---------------------Ccchhhhhcchhhhee
Confidence 455788999999999999998 457899999999999999987 5888999999999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
++|+|.|. +|+|++.|.+-+|||+++... .....||...|.+++|+|+|. +++||+.|..-||||+|++ .++.
T Consensus 267 VafHPsG~-~L~TasfD~tWRlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtg-r~im 339 (459)
T KOG0272|consen 267 VAFHPSGK-FLGTASFDSTWRLWDLETKSE----LLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTG-RCIM 339 (459)
T ss_pred eeecCCCc-eeeecccccchhhcccccchh----hHhhcccccccceeEecCCCc-eeeccCccchhheeecccC-cEEE
Confidence 99999999 999999999999999988543 234678999999999999999 9999999999999999996 5888
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+.+|...|..|+|+|+| +.|||||.|++++|||||.-+.
T Consensus 340 ~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~ 379 (459)
T KOG0272|consen 340 FLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSE 379 (459)
T ss_pred EecccccceeeEeECCCc-eEEeecCCCCcEEEeeeccccc
Confidence 899999999999999999 9999999999999999997653
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=247.24 Aligned_cols=169 Identities=23% Similarity=0.402 Sum_probs=155.6
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
...++.+|.|+|..++|+|+. ++|+++|+|++||+|.+.+ ...+..++||..+|+.+.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t---------------------~s~~V~y~GH~~PVwdV~ 500 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDT---------------------WSCLVIYKGHLAPVWDVQ 500 (707)
T ss_pred eeEEeecCCCceeeeeecccc-cceeeccCCcceeeeeccc---------------------ceeEEEecCCCcceeeEE
Confidence 345689999999999999999 8999999999999999998 577788999999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
|+|.|- +||||+.|++.+||..... . +.+.|.+|-+.|.|++|+|+.. ++|+||.|.+||+||+.++ ..+..+
T Consensus 501 F~P~Gy-YFatas~D~tArLWs~d~~-~---PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G-~~VRiF 573 (707)
T KOG0263|consen 501 FAPRGY-YFATASHDQTARLWSTDHN-K---PLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTG-NSVRIF 573 (707)
T ss_pred ecCCce-EEEecCCCceeeeeecccC-C---chhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCC-cEEEEe
Confidence 999998 9999999999999998662 2 2578999999999999999998 9999999999999999996 578889
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+|.++|.+++|+|+| ++|++|+.||.|+|||+.+++.
T Consensus 574 ~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 574 TGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGSL 611 (707)
T ss_pred cCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCcc
Confidence 9999999999999999 9999999999999999998653
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=214.29 Aligned_cols=179 Identities=26% Similarity=0.501 Sum_probs=162.5
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
..+.+.....-...+..++|++...+++++++.||+++|||+.. ...|+..++.|..+|+
T Consensus 49 ~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------~s~Pi~~~kEH~~EV~ 108 (311)
T KOG0277|consen 49 KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------PSKPIHKFKEHKREVY 108 (311)
T ss_pred CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------CCcchhHHHhhhhheE
Confidence 55666777778899999999999989999999999999999776 4689999999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
+++|++.....+++++-|++|+||+...+.. ..+|.+|...|...+|+|..+++|+++|.|++++|||+|.+.+.+
T Consensus 109 Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S----v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 109 SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS----VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM 184 (311)
T ss_pred EeccccccceeEEeeccCCceEeecCCCCcc----eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee
Confidence 9999998876889999999999999976443 367999999999999999999999999999999999999976665
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
. +.+|...|.++.|+....++|+||+.|+.|++||+|+.+.||
T Consensus 185 ~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl 227 (311)
T KOG0277|consen 185 S-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL 227 (311)
T ss_pred E-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc
Confidence 5 889999999999999888999999999999999999999886
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=240.98 Aligned_cols=205 Identities=22% Similarity=0.390 Sum_probs=180.3
Q ss_pred ccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 018322 63 FHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDE 142 (358)
Q Consensus 63 ~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (358)
+...-|..++.+.|+. .+||.++ ++-.+.+|.+.
T Consensus 448 ~GH~GPVyg~sFsPd~-----------rfLlScS-----ED~svRLWsl~------------------------------ 481 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDR-----------RFLLSCS-----EDSSVRLWSLD------------------------------ 481 (707)
T ss_pred ecCCCceeeeeecccc-----------cceeecc-----CCcceeeeecc------------------------------
Confidence 3456788888888884 4666655 55689999882
Q ss_pred CCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc
Q 018322 143 DSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (358)
.........+|..+|+.++|+|.| .+|||+|.|++.++|.... ..|+
T Consensus 482 -----------t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~---------------------~~Pl 528 (707)
T KOG0263|consen 482 -----------TWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDH---------------------NKPL 528 (707)
T ss_pred -----------cceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeeccc---------------------CCch
Confidence 223334455999999999999999 9999999999999999987 6899
Q ss_pred EEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEE
Q 018322 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIA 302 (358)
Q Consensus 223 ~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (358)
..+.||-+.|.|+.|+|+.. ++++||.|.+|++||+.++.. .+.|.||+++|.+|+|||.|. +||+|+.||.|.
T Consensus 529 RifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~----VRiF~GH~~~V~al~~Sp~Gr-~LaSg~ed~~I~ 602 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNS----VRIFTGHKGPVTALAFSPCGR-YLASGDEDGLIK 602 (707)
T ss_pred hhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcE----EEEecCCCCceEEEEEcCCCc-eEeecccCCcEE
Confidence 99999999999999999998 999999999999999988544 378999999999999999999 999999999999
Q ss_pred EEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 303 IWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|||+..+ .++..+.+|.+.|++|.|+++| ..||+||.|.+|++||+.+..
T Consensus 603 iWDl~~~-~~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 603 IWDLANG-SLVKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EEEcCCC-cchhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEEchhhc
Confidence 9999985 5778889999999999999999 999999999999999998654
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=222.55 Aligned_cols=165 Identities=26% Similarity=0.511 Sum_probs=150.7
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.++|-|++|+|.+ ..||||+.|.++|+||+.. ..|.++.++|..-|.|++|+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~T---------------------eTp~~t~KgH~~WVlcvaws 166 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDT---------------------ETPLFTCKGHKNWVLCVAWS 166 (480)
T ss_pred cccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCC---------------------CCcceeecCCccEEEEEEEC
Confidence 4567899999999999988 7999999999999999998 68999999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC-----CCCEEEEEECCCcEEEEECCCCCCee
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT-----EPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-----~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
|++. .||+|+.||.|++||..+++... ..+.+|+..|++++|.|- .+ .||+++.||+|+|||+..+ .++
T Consensus 167 PDgk-~iASG~~dg~I~lwdpktg~~~g---~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~-~~~ 240 (480)
T KOG0271|consen 167 PDGK-KIASGSKDGSIRLWDPKTGQQIG---RALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLG-TCV 240 (480)
T ss_pred CCcc-hhhccccCCeEEEecCCCCCccc---ccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCc-eEE
Confidence 9999 99999999999999998865544 789999999999999874 35 8999999999999999874 688
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
..+.+|...|+|+.|--++ +|+|||.|++|++|+...+
T Consensus 241 ~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG 278 (480)
T KOG0271|consen 241 RTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDG 278 (480)
T ss_pred EEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccch
Confidence 8999999999999998666 9999999999999998764
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=225.10 Aligned_cols=168 Identities=22% Similarity=0.328 Sum_probs=153.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|...|.+++|+|+| ++|+|++.|.+-+|||+.+ ...+....||..+|++++|+
T Consensus 255 ~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~t---------------------k~ElL~QEGHs~~v~~iaf~ 312 (459)
T KOG0272|consen 255 QDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLET---------------------KSELLLQEGHSKGVFSIAFQ 312 (459)
T ss_pred hhhhcchhhheeeeecCCC-ceeeecccccchhhccccc---------------------chhhHhhcccccccceeEec
Confidence 4567899999999999999 8999999999999999998 45566678999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
++|. +++||+.|..-+|||++++.. + ..+.+|...|.+|.|+|+|- .+||||.|++++|||+|. ...+.++.+
T Consensus 313 ~DGS-L~~tGGlD~~~RvWDlRtgr~-i---m~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~-r~~ly~ipA 385 (459)
T KOG0272|consen 313 PDGS-LAATGGLDSLGRVWDLRTGRC-I---MFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRM-RSELYTIPA 385 (459)
T ss_pred CCCc-eeeccCccchhheeecccCcE-E---EEecccccceeeEeECCCce-EEeecCCCCcEEEeeecc-cccceeccc
Confidence 9998 999999999999999999544 3 56889999999999999998 999999999999999998 457888999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
|..-|+.|.|.|...++|+|+|.|++++||..++++.
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~ 422 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP 422 (459)
T ss_pred ccchhhheEecccCCeEEEEcccCcceeeecCCCccc
Confidence 9999999999996559999999999999999988764
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-28 Score=215.77 Aligned_cols=204 Identities=20% Similarity=0.352 Sum_probs=173.7
Q ss_pred ccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 018322 63 FHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDE 142 (358)
Q Consensus 63 ~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (358)
..++-|.-.+.|.|++ .+|++|+++. .+.+|...
T Consensus 93 NKvkc~V~~v~WtPeG-----------RRLltgs~SG-----EFtLWNg~------------------------------ 126 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEG-----------RRLLTGSQSG-----EFTLWNGT------------------------------ 126 (464)
T ss_pred cccccceeeEEEcCCC-----------ceeEeecccc-----cEEEecCc------------------------------
Confidence 4566677778888885 4788999664 67777652
Q ss_pred CCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc
Q 018322 143 DSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (358)
.-..+..+++|..+|.++.|++++ ..+++|..+|.|++|+.+. +.+
T Consensus 127 -----------~fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnm----------------------nnV 172 (464)
T KOG0284|consen 127 -----------SFNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNM----------------------NNV 172 (464)
T ss_pred -----------eeeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccch----------------------hhh
Confidence 122335677899999999999999 7999999999999999876 334
Q ss_pred EEEcCCC-CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcE
Q 018322 223 VKFGGHK-DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301 (358)
Q Consensus 223 ~~~~~h~-~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (358)
..+..|. ..|.+++|+|... .|++++.||+|+|||...... ...+.+|.-.|.+++|+|.-. ++|++|.|..|
T Consensus 173 k~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~ke----e~vL~GHgwdVksvdWHP~kg-LiasgskDnlV 246 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKE----ERVLRGHGWDVKSVDWHPTKG-LIASGSKDNLV 246 (464)
T ss_pred HHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCch----hheeccCCCCcceeccCCccc-eeEEccCCcee
Confidence 4455555 7999999999877 999999999999999977433 256789999999999999988 99999999999
Q ss_pred EEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 302 AIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
++||.|++ .++.++..|...|..+.|+|++ ++|+|+|.|..++++|+|+.+
T Consensus 247 KlWDprSg-~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mk 297 (464)
T KOG0284|consen 247 KLWDPRSG-SCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMK 297 (464)
T ss_pred EeecCCCc-chhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhH
Confidence 99999996 6899999999999999999999 999999999999999999654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=207.21 Aligned_cols=180 Identities=22% Similarity=0.376 Sum_probs=160.1
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
+++.+|.++-+.+.|+++....+++++.|++|++||++...... ....+...+.+|...|..++|+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~--------------~~~~p~~~~~~h~~~VeDV~~h 236 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED--------------KVVDPKTIFSGHEDVVEDVAWH 236 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC--------------ccccceEEeecCCcceehhhcc
Confidence 46779999899999999988899999999999999998743220 0256778899999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
+....+|++++.|+.+.|||+|+. .........+|++.|+|++|+|.+.++|||||.|++|+|||+|....+++++..
T Consensus 237 ~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 237 PLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG 314 (422)
T ss_pred ccchhhheeecCCCeEEEEEcCCC--CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC
Confidence 998889999999999999999973 222246678899999999999999999999999999999999998889999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|...|.+|.|+|+...+|||++.|+.+.|||+....
T Consensus 315 H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred CCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 999999999999999999999999999999997654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=195.89 Aligned_cols=169 Identities=22% Similarity=0.332 Sum_probs=147.5
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
-....|..++|+|.+ +++|+|+-|....||++....+.. .......+.+|++-+.|..|-+++
T Consensus 95 l~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g---------------~~~v~r~l~gHtgylScC~f~dD~- 157 (343)
T KOG0286|consen 95 LPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEG---------------NVRVSRELAGHTGYLSCCRFLDDN- 157 (343)
T ss_pred cCceeEEEEEECCCC-CeEEecCcCceeEEEecccccccc---------------cceeeeeecCccceeEEEEEcCCC-
Confidence 346789999999999 899999999999999998632211 124446789999999999999854
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
.|+||+.|.++.+||+.++.. ...|.+|++.|.+|+++|...+.|++|+.|++.+|||+|.+ .++++|.+|.++
T Consensus 158 -~ilT~SGD~TCalWDie~g~~----~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesD 231 (343)
T KOG0286|consen 158 -HILTGSGDMTCALWDIETGQQ----TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESD 231 (343)
T ss_pred -ceEecCCCceEEEEEcccceE----EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecccccc
Confidence 799999999999999988443 36799999999999999955559999999999999999996 799999999999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
||+|+|.|+| .-++||++|+++++||||..++
T Consensus 232 INsv~ffP~G-~afatGSDD~tcRlyDlRaD~~ 263 (343)
T KOG0286|consen 232 INSVRFFPSG-DAFATGSDDATCRLYDLRADQE 263 (343)
T ss_pred cceEEEccCC-CeeeecCCCceeEEEeecCCcE
Confidence 9999999999 9999999999999999998654
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-27 Score=205.24 Aligned_cols=172 Identities=27% Similarity=0.406 Sum_probs=151.8
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
.......+.+|+.+|+||+|--++ ++++||.|++|++|+... +.....+.||...|.
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~d---------------------G~~~r~lkGHahwvN 292 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALD---------------------GKLCRELKGHAHWVN 292 (480)
T ss_pred CceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEccc---------------------hhHHHhhcccchhee
Confidence 445667888999999999998777 999999999999999887 567778899999898
Q ss_pred EEEeC-----------CCCC------------------------CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCc
Q 018322 234 AIDWN-----------PITT------------------------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS 278 (358)
Q Consensus 234 ~l~~s-----------~~~~------------------------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~ 278 (358)
.|+.+ |.+. .+|++|+.|.++++|+.....+.+ ....+|..-
T Consensus 293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi---~rmtgHq~l 369 (480)
T KOG0271|consen 293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI---TRMTGHQAL 369 (480)
T ss_pred eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch---hhhhchhhh
Confidence 88877 2222 159999999999999987644443 678899999
Q ss_pred EEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|+.+.|||++. ++|++|.|.+|++||.+++ +.+.++++|-+.|..|+|+.+. ++|++||.|.++++||+|+.+
T Consensus 370 Vn~V~fSPd~r-~IASaSFDkSVkLW~g~tG-k~lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 370 VNHVSFSPDGR-YIASASFDKSVKLWDGRTG-KFLASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred eeeEEECCCcc-EEEEeecccceeeeeCCCc-chhhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeee
Confidence 99999999999 9999999999999999996 5788999999999999999999 999999999999999999865
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-27 Score=206.93 Aligned_cols=171 Identities=20% Similarity=0.295 Sum_probs=156.3
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
++...+.+|.|.|.|+.+.|.+ ..||||+.|++|+|||+.+ ++...++.||...|..+
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlat---------------------g~LkltltGhi~~vr~v 199 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLAT---------------------GQLKLTLTGHIETVRGV 199 (460)
T ss_pred eehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEccc---------------------CeEEEeecchhheeeee
Confidence 3445567899999999999987 8999999999999999988 67778899999999999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
++|+..+ +|++++.|+.|+.||+.. .+. ++.+.||-+.|.+++.+|.-. +|++|+.|.++||||+|+ +..+..
T Consensus 200 avS~rHp-YlFs~gedk~VKCwDLe~-nkv---IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRt-r~~V~~ 272 (460)
T KOG0285|consen 200 AVSKRHP-YLFSAGEDKQVKCWDLEY-NKV---IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRT-RASVHV 272 (460)
T ss_pred eecccCc-eEEEecCCCeeEEEechh-hhh---HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecc-cceEEE
Confidence 9999998 999999999999999976 333 378999999999999999998 999999999999999999 568899
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
+.+|..+|.++.+.|.. ..++|||.|++|++||++.++..
T Consensus 273 l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 273 LSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM 312 (460)
T ss_pred ecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee
Confidence 99999999999999988 78999999999999999998754
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=208.15 Aligned_cols=190 Identities=23% Similarity=0.387 Sum_probs=157.2
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc--ccccccc------------ccCCC------CCC
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNA--LAESETI------------VGQGA------PQV 216 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~--~~~~~~~------------~~~~~------~~~ 216 (358)
+...+-.|.++|.+++|+..| .+|++++.||++.|||....... +...... ..... .+.
T Consensus 268 l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv 346 (524)
T KOG0273|consen 268 LISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKV 346 (524)
T ss_pred hhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEe
Confidence 445667899999999999999 79999999999999999653221 1111111 00000 011
Q ss_pred CCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC-------
Q 018322 217 SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP------- 289 (358)
Q Consensus 217 ~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~------- 289 (358)
....|+.++.||.++|.+|.|+|.+. +|+|++.|++++||....... ...+..|...|..+.|+|+++
T Consensus 347 ~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~TlkiWs~~~~~~----~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 347 GEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKIWSMGQSNS----VHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred cCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEeeecCCCcc----hhhhhhhccceeeEeecCCCCccCCCcC
Confidence 45689999999999999999999998 999999999999999866433 367889999999999999763
Q ss_pred -CEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 290 -DVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 290 -~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+++++.|++|++||+..+ .+++.+..|..+|.+++|+|++ +++|+|+.||.|+||+.++.+
T Consensus 422 ~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred CceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchh
Confidence 47999999999999999985 6899999999999999999999 999999999999999998764
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=196.37 Aligned_cols=174 Identities=23% Similarity=0.348 Sum_probs=151.4
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
......++.+|...|+.+..++++ +++.+++.|+++++||+.. .++...|.||...|.
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~---------------------g~~t~~f~GH~~dVl 109 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLAT---------------------GESTRRFVGHTKDVL 109 (315)
T ss_pred cCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecC---------------------CcEEEEEEecCCceE
Confidence 445567788999999999999999 7999999999999999987 578889999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC-CCEEEEEECCCcEEEEECCCCCCe
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIWDTRVGKSA 312 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iwD~r~~~~~ 312 (358)
+++|++++. +++||+.|.+|.+|++....... ..-.++..-|.++.|+|+. ..+|++++.|++|++||+++ .+.
T Consensus 110 sva~s~dn~-qivSGSrDkTiklwnt~g~ck~t---~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-~~l 184 (315)
T KOG0279|consen 110 SVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYT---IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-CQL 184 (315)
T ss_pred EEEecCCCc-eeecCCCcceeeeeeecccEEEE---EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-cch
Confidence 999999998 99999999999999986532211 1112237889999999994 33999999999999999998 456
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
...+.+|..-++.+.++|+| .++++|+.||.+.+||++..+.
T Consensus 185 ~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGKN 226 (315)
T ss_pred hhccccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCce
Confidence 67788999999999999999 9999999999999999998764
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-27 Score=196.75 Aligned_cols=169 Identities=22% Similarity=0.341 Sum_probs=156.4
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.++.|..+|.++.|++.....++++|-||+|+||+... .+.+.+|.||...|+...|+|
T Consensus 99 ~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r---------------------~~Sv~Tf~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 99 KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR---------------------PNSVQTFNGHNSCIYQAAFSP 157 (311)
T ss_pred HHHhhhhheEEeccccccceeEEeeccCCceEeecCCC---------------------CcceEeecCCccEEEEEecCC
Confidence 45679999999999998878899999999999999987 577889999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
...+++++++.||++++||++..++.. .+..|...+.++.|+....++++||+.|+.||+||+|..+.++..+.+|
T Consensus 158 ~~~nlfas~Sgd~~l~lwdvr~~gk~~----~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh 233 (311)
T KOG0277|consen 158 HIPNLFASASGDGTLRLWDVRSPGKFM----SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH 233 (311)
T ss_pred CCCCeEEEccCCceEEEEEecCCCcee----EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC
Confidence 998899999999999999999877644 3778999999999999888899999999999999999988899999999
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.-.|..|+|+|....+|||++.|-+++|||....
T Consensus 234 ~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 234 GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred ceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 9999999999999899999999999999998744
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=200.82 Aligned_cols=270 Identities=20% Similarity=0.342 Sum_probs=199.6
Q ss_pred CCCCCeeeeCCcccCCCCceeeeChhHHHhhhcccccCcceeEEEEecc-C--------CCcc--------ccCCc----
Q 018322 30 PSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDT-L--------GLVR--------NEFPH---- 88 (358)
Q Consensus 30 ~~~~~~~~~p~~~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~-~--------~~~~--------~~~~~---- 88 (358)
|-.-+.|+.++.. +|-+++-..+|.+.-+.++.||.-++.+|.-. + +... ..+|.
T Consensus 71 PcLsfDVi~D~LG----~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~eddedD~~P~~~~~ 146 (440)
T KOG0302|consen 71 PCLSFDVIPDRLG----DERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDDEDDRKPQIEMK 146 (440)
T ss_pred cccceeeecCCCC----cccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccchhhcccccccc
Confidence 3344566666554 77899999999999999999999999987621 0 0000 01232
Q ss_pred ----------------eEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCC
Q 018322 89 ----------------TAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGS 152 (358)
Q Consensus 89 ----------------~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (358)
..-.++++.+ +.+.++||.+..+.+--.++ ... .. +. +
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~asws---e~G~V~Vw~l~~~l~~l~~~---------------~~~---~~-~s----~ 200 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWS---ENGRVQVWDLAPHLNALSEP---------------GLE---VK-DS----E 200 (440)
T ss_pred ccccccccceeeecccCCcceeeeec---ccCcEEEEEchhhhhhhcCc---------------ccc---cc-cc----c
Confidence 0123444544 45688888885332211110 000 00 00 0
Q ss_pred CCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCe
Q 018322 153 GTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (358)
Q Consensus 153 ~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (358)
..|+ +++.+|.+.=+.+.|+|.....++||.--+.|++|......-.. ... .|.+|+..|
T Consensus 201 ~~Pl--~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~v---------------d~~---Pf~gH~~SV 260 (440)
T KOG0302|consen 201 FRPL--FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKV---------------DQR---PFTGHTKSV 260 (440)
T ss_pred cCce--EEecccCccceeeecccccccccccCccccceEeeeeccCceee---------------cCc---cccccccch
Confidence 1343 46678999999999999665678888888999999987722111 112 356799999
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC--CC
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV--GK 310 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~--~~ 310 (358)
..|+|||...+.|+||++||+|+|||+|.+.+.. ......|.+.|+-|+|+...+ +||+|+.||+++|||+|. ..
T Consensus 261 EDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~--~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~ 337 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA--AVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG 337 (440)
T ss_pred hhhccCCccCceEEeeecCceEEEEEecCCCccc--eeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC
Confidence 9999999999999999999999999999864322 123477999999999999998 999999999999999997 33
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+++..++.|..+|++|.|+|.....|+++|.|.+|.||||.-
T Consensus 338 ~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 338 QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 588999999999999999999888999999999999999964
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=210.88 Aligned_cols=199 Identities=19% Similarity=0.261 Sum_probs=151.3
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCC-------------------
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQV------------------- 216 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~------------------- 216 (358)
..++.+..|...|..+++.|.| ..|+|||.|-+|++||+.....+........+...+..
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred cceEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 4567888899999999999999 78999999999999999874333222111111110000
Q ss_pred -------------------CCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCccc--CCCccccC
Q 018322 217 -------------------SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV--DPNPFIGH 275 (358)
Q Consensus 217 -------------------~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~--~~~~~~~h 275 (358)
....-+...+||...++|.+|+|...+.|+|++.||++++|++.+...... ..+...+.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 001112234789999999999999998999999999999999977443221 11223345
Q ss_pred CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-CeeE-EEecCCC--CeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALT-SFKAHNA--DVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~-~~~~h~~--~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.-+++.++|+|++. +||+|..||+|.+|+.+... .+.. .-.+|.. .|+||+|+++| ++|+|-|.|+++++||||
T Consensus 317 Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg-~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG-NYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc-chhhhccCCCceeeeecc
Confidence 56789999999999 89999999999999987622 2333 3378877 99999999999 999999999999999999
Q ss_pred CCCCCC
Q 018322 352 LLKVRL 357 (358)
Q Consensus 352 ~~~~~l 357 (358)
+++++|
T Consensus 395 q~kkpL 400 (641)
T KOG0772|consen 395 QFKKPL 400 (641)
T ss_pred ccccch
Confidence 999987
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=189.20 Aligned_cols=228 Identities=19% Similarity=0.351 Sum_probs=178.3
Q ss_pred CCceeeeChhHHHhhhcccccCc-ceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCC
Q 018322 46 EGEELQCDPTAYNSLHAFHIGWP-CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPN 124 (358)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP-~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~ 124 (358)
+|--+.-|.+.=+-.|.+.+.=- .+++-+-|.+ .++++|. -+|...|+.++.-
T Consensus 76 DGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-----------~~VAcGG-----LdN~Csiy~ls~~---------- 129 (343)
T KOG0286|consen 76 DGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-----------NFVACGG-----LDNKCSIYPLSTR---------- 129 (343)
T ss_pred CCeEEEEEcccccceeEEecCceeEEEEEECCCC-----------CeEEecC-----cCceeEEEecccc----------
Confidence 45555555544444444433211 2466666664 4666665 6789999988410
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc
Q 018322 125 KPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAE 204 (358)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~ 204 (358)
+.+ ....+...+.+|++-+.|++|-+++ .|+|+|.|.+..+||+.+
T Consensus 130 -------------------d~~------g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~------- 175 (343)
T KOG0286|consen 130 -------------------DAE------GNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIET------- 175 (343)
T ss_pred -------------------ccc------ccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEccc-------
Confidence 000 1334446688999999999999966 788999999999999998
Q ss_pred ccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEE
Q 018322 205 SETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQW 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~ 284 (358)
.+.+..|.||.+.|.+|+++|...+.++||++|+..+|||+|.+ .. .+.|.+|.+.|++|+|
T Consensus 176 --------------g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c---~qtF~ghesDINsv~f 237 (343)
T KOG0286|consen 176 --------------GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QC---VQTFEGHESDINSVRF 237 (343)
T ss_pred --------------ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc-ce---eEeecccccccceEEE
Confidence 67888999999999999999943349999999999999999985 33 3789999999999999
Q ss_pred CCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe--cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 285 SPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 285 sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.|+|. -|++|++|++.|+||+|.. +.+..+. .-..+|++++|+..| ++|+.|..|.++.+||.-+.+
T Consensus 238 fP~G~-afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 238 FPSGD-AFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ccCCC-eeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccc
Confidence 99998 9999999999999999995 3444443 234579999999999 999999999999999986554
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=201.68 Aligned_cols=167 Identities=26% Similarity=0.519 Sum_probs=146.0
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
.|+. ++++|.++|++++|+|.+ .+|+|+|+|++++||.+.. ......+.+|..+|+
T Consensus 350 ~P~~--t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~---------------------~~~~~~l~~Hskei~ 405 (524)
T KOG0273|consen 350 RPVK--TFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQ---------------------SNSVHDLQAHSKEIY 405 (524)
T ss_pred Ccce--eeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCC---------------------Ccchhhhhhhcccee
Confidence 5554 566899999999999999 8999999999999999876 566778899999999
Q ss_pred EEEeCCCCCC--------eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 234 AIDWNPITTG--------RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 234 ~l~~s~~~~~--------~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
.+.|+|.+.+ .|++++.|++|++||+..+ .+ ...|..|+.+|.+|+|+|++. ++|+|+.||.|.||+
T Consensus 406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~---i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 406 TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-VP---IHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWS 480 (524)
T ss_pred eEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-ce---eEeeccCCCceEEEEecCCCc-EEEecCCCCeeEecc
Confidence 9999998753 7999999999999999773 33 367889999999999999999 999999999999999
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
++++ ..++.+.. ...|..++||..| ..|..+-.||.+++-|+|.
T Consensus 481 ~~~~-~l~~s~~~-~~~Ifel~Wn~~G-~kl~~~~sd~~vcvldlr~ 524 (524)
T KOG0273|consen 481 TKTG-KLVKSYQG-TGGIFELCWNAAG-DKLGACASDGSVCVLDLRK 524 (524)
T ss_pred ccch-heeEeecC-CCeEEEEEEcCCC-CEEEEEecCCCceEEEecC
Confidence 9985 46665554 4559999999999 8888888999999999984
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=206.49 Aligned_cols=202 Identities=19% Similarity=0.421 Sum_probs=172.9
Q ss_pred cccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 64 HIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDED 143 (358)
Q Consensus 64 ~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (358)
..+-|.-++.|.+++ .++|.|. ..++|++|+. |+.
T Consensus 136 aHDs~Vr~m~ws~~g-----------~wmiSgD-----~gG~iKyWqp-nmn---------------------------- 170 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNG-----------TWMISGD-----KGGMIKYWQP-NMN---------------------------- 170 (464)
T ss_pred hhcccceeEEEccCC-----------CEEEEcC-----CCceEEeccc-chh----------------------------
Confidence 457899999999986 5888777 5568998875 221
Q ss_pred CCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE
Q 018322 144 SDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (358)
........|...|++++|+|.. ..|+|+|+||+|+|||+.. .++..
T Consensus 171 ------------nVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~---------------------~kee~ 216 (464)
T KOG0284|consen 171 ------------NVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRM---------------------PKEER 216 (464)
T ss_pred ------------hhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccC---------------------Cchhh
Confidence 1111222355999999999977 7999999999999999987 46667
Q ss_pred EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
.+.||.-.|.+++|+|... ++|+|+.|..|++||.+++. ++ .++.+|+..|..+.|+|+++ +|+++|.|..+++
T Consensus 217 vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~-cl---~tlh~HKntVl~~~f~~n~N-~Llt~skD~~~kv 290 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGS-CL---ATLHGHKNTVLAVKFNPNGN-WLLTGSKDQSCKV 290 (464)
T ss_pred eeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcc-hh---hhhhhccceEEEEEEcCCCC-eeEEccCCceEEE
Confidence 7899999999999999986 99999999999999999844 33 67889999999999999995 9999999999999
Q ss_pred EECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 304 WDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+|+|+. +-+.++++|...|+++.|+|-...+|++|+.||.|..|.+-
T Consensus 291 ~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 291 FDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred EehhHh-HHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 999964 46778899999999999999988999999999999999987
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-25 Score=186.81 Aligned_cols=178 Identities=19% Similarity=0.262 Sum_probs=156.4
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
.-.+.-.+.+|++.|..++..+.++.++.+++.|.++.+|++...... .+.+++.+.||...|.
T Consensus 4 ~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------~G~~~r~~~GHsH~v~ 67 (315)
T KOG0279|consen 4 QLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------YGVPVRRLTGHSHFVS 67 (315)
T ss_pred hheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------cCceeeeeeccceEec
Confidence 345667889999999999999999899999999999999999884221 3688999999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
.+..+++++ ++++++.|+.+++||+.++ .. .+.|.+|+..|.+++|+|+.+ .+++|+.|.+|++|++-. .+.
T Consensus 68 dv~~s~dg~-~alS~swD~~lrlWDl~~g-~~---t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g--~ck 139 (315)
T KOG0279|consen 68 DVVLSSDGN-FALSASWDGTLRLWDLATG-ES---TRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLG--VCK 139 (315)
T ss_pred ceEEccCCc-eEEeccccceEEEEEecCC-cE---EEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecc--cEE
Confidence 999999998 9999999999999999874 33 367999999999999999998 999999999999999986 455
Q ss_pred EEEecC--CCCeEEEEEeCCC-CcEEEEEeCCCCEEEEeCCCCCC
Q 018322 314 TSFKAH--NADVNVISWNRLA-SCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 314 ~~~~~h--~~~V~~i~~~p~~-~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.++..+ ...|+|+.|+|+. +.+|+++|.|++|++||+++.+.
T Consensus 140 ~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 140 YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 555433 7899999999984 48999999999999999998764
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=209.52 Aligned_cols=175 Identities=16% Similarity=0.313 Sum_probs=143.4
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
+.+|.+.|+++.|+|.++.+||+|+.||+|+|||+....... ....++..+.+|...|.+|+|+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~--------------~~~~~l~~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ--------------NISDPIVHLQGHTKKVGIVSFHPS 136 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc--------------ccCcceEEecCCCCcEEEEEeCcC
Confidence 468999999999999544799999999999999997621100 013567789999999999999998
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
+.++|++|+.|++|+|||+.++. . ...+.+|...|.+++|+|++. +|++|+.|+.|+|||+|++ ..+..+.+|.
T Consensus 137 ~~~iLaSgs~DgtVrIWDl~tg~-~---~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg-~~v~tl~~H~ 210 (493)
T PTZ00421 137 AMNVLASAGADMVVNVWDVERGK-A---VEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDG-TIVSSVEAHA 210 (493)
T ss_pred CCCEEEEEeCCCEEEEEECCCCe-E---EEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCC-cEEEEEecCC
Confidence 75599999999999999998743 2 245778999999999999998 9999999999999999985 4677788887
Q ss_pred CC-eEEEEEeCCCCcEEEEEe----CCCCEEEEeCCCCCCC
Q 018322 321 AD-VNVISWNRLASCLLASGS----DDGTFSIHDLRLLKVR 356 (358)
Q Consensus 321 ~~-V~~i~~~p~~~~~lasgs----~Dg~i~iwDlr~~~~~ 356 (358)
.. +..+.|.+++ .+|++++ .|+.|++||+|+...+
T Consensus 211 ~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~p 250 (493)
T PTZ00421 211 SAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMASP 250 (493)
T ss_pred CCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCCc
Confidence 64 4578899987 4555443 4799999999987655
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=190.75 Aligned_cols=238 Identities=18% Similarity=0.312 Sum_probs=187.0
Q ss_pred hhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCC
Q 018322 54 PTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDV 133 (358)
Q Consensus 54 ~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (358)
|+-|+........-||-...+-||+ +.++.|+ .+-.|.|++++.|.... .++
T Consensus 100 ~~~yEt~ylt~HK~~cR~aafs~DG-----------~lvATGs-----aD~SIKildvermlaks-~~~----------- 151 (430)
T KOG0640|consen 100 PSEYETKYLTSHKSPCRAAAFSPDG-----------SLVATGS-----ADASIKILDVERMLAKS-KPK----------- 151 (430)
T ss_pred CcccceEEEeecccceeeeeeCCCC-----------cEEEccC-----CcceEEEeehhhhhhhc-chh-----------
Confidence 7788888888889999999999986 5666666 45699999997654332 110
Q ss_pred CCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCC
Q 018322 134 DSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGA 213 (358)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 213 (358)
++.. .+.. ...|.+ .++..|..+|+++.|+|.. .+|++|+.|++|++||+.+...
T Consensus 152 -em~~-------~~~q--a~hPvI-RTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~sa------------- 206 (430)
T KOG0640|consen 152 -EMIS-------GDTQ--ARHPVI-RTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSA------------- 206 (430)
T ss_pred -hhcc-------CCcc--cCCceE-eehhhccCcccceeecchh-heEEeccCCCeEEEEecccHHH-------------
Confidence 1110 0000 013544 7888999999999999988 8999999999999999987321
Q ss_pred CCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEE
Q 018322 214 PQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFA 293 (358)
Q Consensus 214 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~la 293 (358)
.+....| ....++.+|.|+|.|. +|+.|...-+++|||+++.+. .+...+-.+|++.|++|.+++++. +.+
T Consensus 207 -----KrA~K~~-qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Qc-fvsanPd~qht~ai~~V~Ys~t~~-lYv 277 (430)
T KOG0640|consen 207 -----KRAFKVF-QDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQC-FVSANPDDQHTGAITQVRYSSTGS-LYV 277 (430)
T ss_pred -----HHHHHHh-hccceeeeEeecCCCc-eEEEecCCCceeEEeccceeE-eeecCcccccccceeEEEecCCcc-EEE
Confidence 1122222 3345899999999999 999999999999999988443 333456778999999999999999 999
Q ss_pred EEECCCcEEEEECCCCCCeeEEE-ecCC-CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 294 SCSVDGHIAIWDTRVGKSALTSF-KAHN-ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 294 s~s~Dg~I~iwD~r~~~~~~~~~-~~h~-~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+++.||.|+|||--+. .|+.++ .+|. +.|.+..|..++ .+|++.|.|..+++|.+.+++.
T Consensus 278 TaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 278 TASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred EeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCce
Confidence 9999999999998874 588777 6675 478999999999 9999999999999999987753
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=207.85 Aligned_cols=168 Identities=24% Similarity=0.399 Sum_probs=148.3
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
+.+|...|++++|+|++ .++++++.|++|+|||+.. ....+.++.+|...|++++|+|.
T Consensus 199 l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~--------------------~~~~~~~l~gH~~~v~~~~f~p~ 257 (456)
T KOG0266|consen 199 LSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKD--------------------DGRNLKTLKGHSTYVTSVAFSPD 257 (456)
T ss_pred ccccccceeeeEECCCC-cEEEEecCCceEEEeeccC--------------------CCeEEEEecCCCCceEEEEecCC
Confidence 36899999999999999 7999999999999999954 25778899999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-eeEEEecC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-ALTSFKAH 319 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-~~~~~~~h 319 (358)
+. ++++|+.|++|+|||+++ +... ..+.+|...|++++|++++. +|++++.|+.|+|||+.++.. ++..+..+
T Consensus 258 g~-~i~Sgs~D~tvriWd~~~-~~~~---~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 331 (456)
T KOG0266|consen 258 GN-LLVSGSDDGTVRIWDVRT-GECV---RKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSGA 331 (456)
T ss_pred CC-EEEEecCCCcEEEEeccC-CeEE---EeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccCC
Confidence 96 999999999999999988 4433 78899999999999999999 999999999999999998542 34555555
Q ss_pred CCC--eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 320 NAD--VNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 320 ~~~--V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
... +++++|+|++ .+|++++.|+.+++||++..+.+
T Consensus 332 ~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred CCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcce
Confidence 544 9999999999 99999999999999999987543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-25 Score=196.46 Aligned_cols=238 Identities=16% Similarity=0.237 Sum_probs=183.2
Q ss_pred hcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCC
Q 018322 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDS 140 (358)
Q Consensus 61 ~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (358)
|-+-+.-+-|++.|+--+.+.... ..|+++||... .|.||++.-+.......
T Consensus 168 HD~ilpafPLC~ewld~~~~~~~~----gNyvAiGtmdp-----~IeIWDLDI~d~v~P~~------------------- 219 (463)
T KOG0270|consen 168 HDFILPAFPLCIEWLDHGSKSGGA----GNYVAIGTMDP-----EIEIWDLDIVDAVLPCV------------------- 219 (463)
T ss_pred cceeccCcchhhhhhhcCCCCCCC----cceEEEeccCc-----eeEEeccccccccccce-------------------
Confidence 444455555788998653322221 25999999654 89999984211100000
Q ss_pred CCCCCCccCCCC---CCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCC
Q 018322 141 DEDSDDDEEGGS---GTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVS 217 (358)
Q Consensus 141 ~~~~~~~~~~~~---~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~ 217 (358)
--+..... +.........+|+..|-.+.|+..-.++||+||.|.+|.+||+..
T Consensus 220 ----~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~-------------------- 275 (463)
T KOG0270|consen 220 ----TLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT-------------------- 275 (463)
T ss_pred ----eechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC--------------------
Confidence 00000000 011111224479999999999988889999999999999999998
Q ss_pred CCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 218 ~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
.+|..++..|..+|.+++|+|.....|++|+.|++|.|.|.|..+.. .....-.+.|..+.|.|...+.|+++..
T Consensus 276 -g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s----~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 276 -GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS----GKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred -CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc----CceEEeccceEEEEecCCCceeEEEecC
Confidence 78999999999999999999998889999999999999999963321 2222346789999999999989999999
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
||+|+-+|+|...+++.++++|.+.|.+|+++...+.+++|++.|+.|++|++..-+.
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 9999999999988899999999999999999999989999999999999999876554
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=180.19 Aligned_cols=172 Identities=22% Similarity=0.248 Sum_probs=135.9
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
...+.+|+..|..|.|.-+| +.+.|||+||+++|||++.. .... ...|..+|.++..
T Consensus 76 v~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~---------------------~~qR-~~~~~spVn~vvl 132 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSL---------------------SCQR-NYQHNSPVNTVVL 132 (311)
T ss_pred eeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCc---------------------ccch-hccCCCCcceEEe
Confidence 35677999999999999999 89999999999999999872 1111 2234456666666
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCC---------------------------------------------CcccCCCcc
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDA---------------------------------------------TWNVDPNPF 272 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~---------------------------------------------~~~~~~~~~ 272 (358)
+|... .|++|+.+|.|++||+.+.. ....+...|
T Consensus 133 hpnQt-eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 133 HPNQT-ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred cCCcc-eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 66654 66666666666666665420 112234557
Q ss_pred ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 273 ~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+.|.+-+..+.+||++. +||+||.|.+++||.+...-..-..+.+|...+...+|+-++ .+|+||+.|+++++||+++
T Consensus 212 ~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADG-EYLVTASSDHTARLWDLSA 289 (311)
T ss_pred ecccceEEEEEECCCCc-EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCc-cEEEecCCCCceeeccccc
Confidence 78999999999999999 999999999999999987534455678999999999999999 9999999999999999998
Q ss_pred CCC
Q 018322 353 LKV 355 (358)
Q Consensus 353 ~~~ 355 (358)
.+.
T Consensus 290 ~k~ 292 (311)
T KOG0315|consen 290 GKE 292 (311)
T ss_pred Cce
Confidence 873
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=202.54 Aligned_cols=178 Identities=19% Similarity=0.316 Sum_probs=140.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.+.|+++.|+|..+.+||||+.||+|+|||+......... ...++..+.+|...|.+++|+
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~-------------i~~p~~~L~gH~~~V~sVaf~ 134 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE-------------IKDPQCILKGHKKKISIIDWN 134 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-------------cccceEEeecCCCcEEEEEEC
Confidence 4667999999999999985589999999999999999752110000 124566788999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|.+..+|++|+.|++|+|||++++.. . ..+. |...|.+++|+|++. +|++++.|+.|+|||+|++ ..+..+.+
T Consensus 135 P~g~~iLaSgS~DgtIrIWDl~tg~~-~---~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg-~~i~tl~g 207 (568)
T PTZ00420 135 PMNYYIMCSSGFDSFVNIWDIENEKR-A---FQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ-EIASSFHI 207 (568)
T ss_pred CCCCeEEEEEeCCCeEEEEECCCCcE-E---EEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC-cEEEEEec
Confidence 99875678999999999999987432 1 2232 567899999999998 9999999999999999985 56778889
Q ss_pred CCCCeEEEE-----EeCCCCcEEEEEeCCC----CEEEEeCCCCCCCC
Q 018322 319 HNADVNVIS-----WNRLASCLLASGSDDG----TFSIHDLRLLKVRL 357 (358)
Q Consensus 319 h~~~V~~i~-----~~p~~~~~lasgs~Dg----~i~iwDlr~~~~~l 357 (358)
|.+.+.+.. |++++ .+|+|++.|+ +|+|||+|+...++
T Consensus 208 H~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl 254 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSAL 254 (568)
T ss_pred ccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCce
Confidence 987654433 45777 6777777664 79999999876654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=201.36 Aligned_cols=171 Identities=20% Similarity=0.344 Sum_probs=154.8
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
...+.+|..-|.+|..+|..| ++.|+|+|-+|++||... ...+.++|.||..-|.+++|
T Consensus 90 V~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~--------------------~wa~~qtfeGH~HyVMqv~f 148 (794)
T KOG0276|consen 90 VKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWEN--------------------EWACEQTFEGHEHYVMQVAF 148 (794)
T ss_pred eEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccC--------------------ceeeeeEEcCcceEEEEEEe
Confidence 356779999999999999996 788999999999999998 57888999999999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC-CCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
+|..++.+|||+-|++|++|.+.++.. ..++.+|...|++|.+-+.+ ..+++||++|.+|+|||..+ +.|+.++
T Consensus 149 nPkD~ntFaS~sLDrTVKVWslgs~~~----nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt-k~CV~TL 223 (794)
T KOG0276|consen 149 NPKDPNTFASASLDRTVKVWSLGSPHP----NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT-KSCVQTL 223 (794)
T ss_pred cCCCccceeeeeccccEEEEEcCCCCC----ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch-HHHHHHh
Confidence 999988999999999999999966322 47889999999999998765 23899999999999999998 5799999
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+|...|+.+.|+|.- .+|+|||.||+++||.-.+.+.
T Consensus 224 eGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 224 EGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred hcccccceEEEecCCC-cEEEEecCCccEEEecCcceeh
Confidence 9999999999999998 8999999999999999877653
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-24 Score=187.89 Aligned_cols=187 Identities=22% Similarity=0.379 Sum_probs=150.5
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc-ccccccccc---cCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN-ALAESETIV---GQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
.+|.+.|-+|+..+++ ..+++|+.|.+|.||+...... ..+...... ...........|+.++.||..+|.++.|
T Consensus 190 ~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred cccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 3999999999999999 7999999999999999443211 111111100 0111222457899999999999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC--eeEE
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS--ALTS 315 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~--~~~~ 315 (358)
++. +.+++++.|.+|+.||+.+++.. ..+. -..+++++..+|... ++|+|+.|..||+||.|++.. ..++
T Consensus 269 ~d~--~v~yS~SwDHTIk~WDletg~~~----~~~~-~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DPR~~~gs~v~~s 340 (423)
T KOG0313|consen 269 SDA--TVIYSVSWDHTIKVWDLETGGLK----STLT-TNKSLNCISYSPLSK-LLASGSSDRHIRLWDPRTGDGSVVSQS 340 (423)
T ss_pred cCC--CceEeecccceEEEEEeecccce----eeee-cCcceeEeecccccc-eeeecCCCCceeecCCCCCCCceeEEe
Confidence 993 38999999999999999885542 2222 246799999999887 999999999999999999654 4456
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
+.+|...|.++.|+|...++|++|+.|+++++||+|+.+.||
T Consensus 341 ~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~pl 382 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPL 382 (423)
T ss_pred eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcc
Confidence 789999999999999998999999999999999999998776
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-24 Score=200.45 Aligned_cols=218 Identities=19% Similarity=0.328 Sum_probs=175.0
Q ss_pred hHHHhhhccccc-CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCC
Q 018322 55 TAYNSLHAFHIG-WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDV 133 (358)
Q Consensus 55 ~~Y~~~~~~~~~-wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (358)
.-+.++|..++. -|-+++-|---+ -.+++|.. .-++|.||.+.
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tG-----------DWiA~g~~----klgQLlVweWq--------------------- 338 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTG-----------DWIAFGCS----KLGQLLVWEWQ--------------------- 338 (893)
T ss_pred CCceEEEEeecccceeeEEEecccC-----------CEEEEcCC----ccceEEEEEee---------------------
Confidence 344566766666 565555553221 36677763 45699999984
Q ss_pred CCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCC
Q 018322 134 DSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGA 213 (358)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 213 (358)
.....+..++|...++++.++|+| .++|||++||+|+|||...
T Consensus 339 --------------------sEsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S---------------- 381 (893)
T KOG0291|consen 339 --------------------SESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS---------------- 381 (893)
T ss_pred --------------------ccceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC----------------
Confidence 123446677999999999999999 7999999999999999987
Q ss_pred CCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc----------------------------
Q 018322 214 PQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW---------------------------- 265 (358)
Q Consensus 214 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~---------------------------- 265 (358)
+-+..+|..|+..|+++.|+..+. .+++.+-||+|+.||+......
T Consensus 382 -----gfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 382 -----GFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred -----ceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence 678899999999999999999998 9999999999999998653110
Q ss_pred --------c----cCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCC
Q 018322 266 --------N----VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLAS 333 (358)
Q Consensus 266 --------~----~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~ 333 (358)
. ..+-.+.||.++|.+++|+|.+. +|||+|.|.+||+||+-.....+.++ .+...+..++|.|+|
T Consensus 456 d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG- 532 (893)
T KOG0291|consen 456 DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDG- 532 (893)
T ss_pred ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCC-
Confidence 0 01123459999999999999998 99999999999999998754455555 467789999999999
Q ss_pred cEEEEEeCCCCEEEEeCCCCC
Q 018322 334 CLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 334 ~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.-||++..||+|.+||.....
T Consensus 533 ~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 533 KELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred CeEEEEEecceEEEEEhhhce
Confidence 999999999999999987543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=174.49 Aligned_cols=166 Identities=23% Similarity=0.396 Sum_probs=146.8
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
-+|+..|.+|+|+|.+ ++||++|.|.++.||.-... ....+.++.||..+|-|++|+++|
T Consensus 58 ~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~-------------------efecv~~lEGHEnEVK~Vaws~sG 117 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDG-------------------EFECVATLEGHENEVKCVAWSASG 117 (312)
T ss_pred ccchheeeeeeecCCC-cEEEEeeccceEEEeecCCC-------------------ceeEEeeeeccccceeEEEEcCCC
Confidence 4799999999999999 79999999999999986541 256788999999999999999999
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC--CCeeEEEecC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG--KSALTSFKAH 319 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~--~~~~~~~~~h 319 (358)
. +||+++.|+.|-+|.+...... .....++.|+..|-.+.|+|... +|+|||.|.+|++|.-... -.++.++.+|
T Consensus 118 ~-~LATCSRDKSVWiWe~deddEf-ec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~ 194 (312)
T KOG0645|consen 118 N-YLATCSRDKSVWIWEIDEDDEF-ECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDEDDDDWECVQTLDGH 194 (312)
T ss_pred C-EEEEeeCCCeEEEEEecCCCcE-EEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeecCCCCeeEEEEecCc
Confidence 8 9999999999999999864432 22456889999999999999998 9999999999999977632 2478889999
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
...|.+++|++.| ..|+++++|++++||-++
T Consensus 195 ~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 195 ENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred cceEEEEEecCCC-ceEEEecCCcceEeeeec
Confidence 9999999999999 899999999999999854
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=184.93 Aligned_cols=169 Identities=25% Similarity=0.420 Sum_probs=147.1
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
-...+.+|+++|..|-|++. ..+.+++.|.+|+.||+.. ......+.+. ..+++++
T Consensus 252 P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDlet---------------------g~~~~~~~~~-ksl~~i~ 307 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLET---------------------GGLKSTLTTN-KSLNCIS 307 (423)
T ss_pred ceEEecccccceeeEEEcCC--CceEeecccceEEEEEeec---------------------ccceeeeecC-cceeEee
Confidence 33567899999999999994 4899999999999999987 3444444443 4788999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
.+|... +|++|+.|..|+|||.+++... +....|.+|+.-|.++.|+|.+.+.|++|+.|+++++||+|+...++..+
T Consensus 308 ~~~~~~-Ll~~gssdr~irl~DPR~~~gs-~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI 385 (423)
T KOG0313|consen 308 YSPLSK-LLASGSSDRHIRLWDPRTGDGS-VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI 385 (423)
T ss_pred cccccc-eeeecCCCCceeecCCCCCCCc-eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence 999887 9999999999999999986443 33577999999999999999999999999999999999999987799999
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.+|...|.++.|+..+ +|+|||.|.+|+|+.-+..
T Consensus 386 ~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~~~ 420 (423)
T KOG0313|consen 386 AGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGSPI 420 (423)
T ss_pred ccCCceEEEEeccCCc--eEEeccCcceEEEeccccc
Confidence 9999999999999754 8999999999999976654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-23 Score=197.65 Aligned_cols=211 Identities=16% Similarity=0.244 Sum_probs=159.5
Q ss_pred cCcceeEEEEe-ccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVR-DTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (358)
Q Consensus 66 ~wP~ls~~~~~-d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (358)
.=+.+++.|.| +. .+|++|+ .++.|.||++..-. .
T Consensus 75 ~~~V~~v~fsP~d~-----------~~LaSgS-----~DgtIkIWdi~~~~----------------------~------ 110 (493)
T PTZ00421 75 EGPIIDVAFNPFDP-----------QKLFTAS-----EDGTIMGWGIPEEG----------------------L------ 110 (493)
T ss_pred CCCEEEEEEcCCCC-----------CEEEEEe-----CCCEEEEEecCCCc----------------------c------
Confidence 34678888888 42 4677776 56799999883100 0
Q ss_pred CCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE
Q 018322 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (358)
.... ..++ ..+.+|...|.+++|+|.+..+||+++.|++|+|||+.. ...+..
T Consensus 111 -~~~~---~~~l--~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t---------------------g~~~~~ 163 (493)
T PTZ00421 111 -TQNI---SDPI--VHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER---------------------GKAVEV 163 (493)
T ss_pred -cccc---Ccce--EEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC---------------------CeEEEE
Confidence 0000 1222 456789999999999998767999999999999999987 456677
Q ss_pred EcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCc-EEEEEECCCCCCEEEEEE----CCC
Q 018322 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS-VEDLQWSPTEPDVFASCS----VDG 299 (358)
Q Consensus 225 ~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~-V~~v~~sp~~~~~las~s----~Dg 299 (358)
+.+|...|++++|+|++. +|++|+.|++|++||++++.. . ..+.+|... +..+.|++.+. .+++++ .|+
T Consensus 164 l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~-v---~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr 237 (493)
T PTZ00421 164 IKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTI-V---SSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQR 237 (493)
T ss_pred EcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcE-E---EEEecCCCCcceEEEEcCCCC-eEEEEecCCCCCC
Confidence 889999999999999998 999999999999999987432 2 456677654 45678999887 555544 479
Q ss_pred cEEEEECCCCCCeeEEEecC-CCCeEEEEEeCCCCcEEEEEe-CCCCEEEEeCCCCC
Q 018322 300 HIAIWDTRVGKSALTSFKAH-NADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLK 354 (358)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h-~~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDlr~~~ 354 (358)
.|+|||+|....++.....+ ...+....|++++ .+|++|+ .||.|++||+++.+
T Consensus 238 ~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 238 QIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred eEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEEEEEeeCCc
Confidence 99999999865555544433 3456667889998 7777776 59999999998764
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-24 Score=186.34 Aligned_cols=170 Identities=26% Similarity=0.435 Sum_probs=154.1
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
..++..++.+|...|..+++++-.| ++.+++.|+.|+.||+.. .+.+..+.||-..|+
T Consensus 182 tg~LkltltGhi~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~---------------------nkvIR~YhGHlS~V~ 239 (460)
T KOG0285|consen 182 TGQLKLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEY---------------------NKVIRHYHGHLSGVY 239 (460)
T ss_pred cCeEEEeecchhheeeeeeecccCc-eEEEecCCCeeEEEechh---------------------hhhHHHhccccceeE
Confidence 6788899999999999999999995 788899999999999987 577888999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
||+.+|.-. .|++|+.|.++++||+++... ...+.||+.+|.+|.+.|..+ .+++||.|++|++||++.+ +.+
T Consensus 240 ~L~lhPTld-vl~t~grDst~RvWDiRtr~~----V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~ag-kt~ 312 (460)
T KOG0285|consen 240 CLDLHPTLD-VLVTGGRDSTIRVWDIRTRAS----VHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAG-KTM 312 (460)
T ss_pred EEeccccce-eEEecCCcceEEEeeecccce----EEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccC-cee
Confidence 999999998 999999999999999998543 367899999999999999988 8999999999999999996 477
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.++..|...|.+++.+|.. +++|+++.| .|+-|++..+.
T Consensus 313 ~tlt~hkksvral~lhP~e-~~fASas~d-nik~w~~p~g~ 351 (460)
T KOG0285|consen 313 ITLTHHKKSVRALCLHPKE-NLFASASPD-NIKQWKLPEGE 351 (460)
T ss_pred EeeecccceeeEEecCCch-hhhhccCCc-cceeccCCccc
Confidence 8889999999999999999 899999887 68999987553
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-24 Score=206.84 Aligned_cols=167 Identities=23% Similarity=0.419 Sum_probs=148.5
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
-.++.|.|.....++|||++..|.|.+||++... ..+.+..|..|+..+++|+|++..+++|
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~------------------rnk~l~~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI------------------RNKLLTVFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCccc------------------cchhhhHhhhhccceeeeeeccCCccEE
Confidence 5677788886557899999999999999998732 2355667899999999999999999999
Q ss_pred EEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEE
Q 018322 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV 325 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~ 325 (358)
+||+.||+|++||++.... ...+.+...+|.+|+|+|...+.|+++.+.|.+++||+|.+..+...+.+|.++|.|
T Consensus 150 iSGSQDg~vK~~DlR~~~S----~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKS----KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccc----cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 9999999999999998543 256777889999999999999999999999999999999988899999999999999
Q ss_pred EEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 326 ISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 326 i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+.|+|++ .+|||||.|+.|+|||+...+.
T Consensus 226 ~nwhPnr-~~lATGGRDK~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 226 LNWHPNR-EWLATGGRDKMVKIWDMTDSRA 254 (839)
T ss_pred EeecCCC-ceeeecCCCccEEEEeccCCCc
Confidence 9999988 9999999999999999986543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=199.33 Aligned_cols=173 Identities=23% Similarity=0.390 Sum_probs=150.4
Q ss_pred CeEEEEEecC-CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 155 PILQLRKVAH-QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 155 ~~~~~~~~~H-~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
..+...+..| ...|.++.|++++ ..+++++.++.+++|+..... ......+.+|...|.
T Consensus 148 ~~~~~~~~~~~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~-------------------~~~~~~l~~h~~~v~ 207 (456)
T KOG0266|consen 148 FSLEQTLAGHECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIK-------------------SNLLRELSGHTRGVS 207 (456)
T ss_pred ceeeeeecccccCceEEEEEcCCC-CeEEEccCCCcEEEeeccccc-------------------chhhcccccccccee
Confidence 3444444454 7899999999999 679999999999999995410 024455689999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
+++|+|++. ++++|+.|++|++||+...+... +.+.+|...|++++|+|.+. ++++|+.|++|+|||+++ ..++
T Consensus 208 ~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~~---~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~-~~~~ 281 (456)
T KOG0266|consen 208 DVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRNL---KTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRT-GECV 281 (456)
T ss_pred eeEECCCCc-EEEEecCCceEEEeeccCCCeEE---EEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccC-CeEE
Confidence 999999999 99999999999999995544433 77889999999999999995 999999999999999999 4688
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+.+|...|++++|++++ .+|++++.||.|+|||+.++.
T Consensus 282 ~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 282 RKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred EeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCc
Confidence 9999999999999999999 999999999999999999887
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-24 Score=199.83 Aligned_cols=161 Identities=19% Similarity=0.356 Sum_probs=149.5
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
.....|...|||+.++|.. .++||||.|.+.+||++.. ...+.++.||+..++++.|+
T Consensus 457 ~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~---------------------~~l~~vLsGH~RGvw~V~Fs 514 (775)
T KOG0319|consen 457 YTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQ---------------------LRLLGVLSGHTRGVWCVSFS 514 (775)
T ss_pred HHHHhhcccccceEecCCC-ceEEecccccceeeecccC---------------------ceEEEEeeCCccceEEEEec
Confidence 3566799999999999998 8999999999999999985 57788999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
+... .++|+|.|++|+||.+.+... .++|.||+..|..++|-.++. .|+||+.||-|+||++.+ ..|..++.+
T Consensus 515 ~~dq-~laT~SgD~TvKIW~is~fSC----lkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt-~eC~~tlD~ 587 (775)
T KOG0319|consen 515 KNDQ-LLATCSGDKTVKIWSISTFSC----LKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKT-NECEMTLDA 587 (775)
T ss_pred cccc-eeEeccCCceEEEEEecccee----eeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccc-hhhhhhhhh
Confidence 9998 999999999999999988443 478999999999999999998 999999999999999998 469999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
|+..|++++-+|.. .+++||+.||.|.+|-
T Consensus 588 H~DrvWaL~~~~~~-~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 588 HNDRVWALSVSPLL-DMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccceeEEEeecCcc-ceeEecCCCeEEEEee
Confidence 99999999999999 7999999999999995
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=190.20 Aligned_cols=168 Identities=26% Similarity=0.339 Sum_probs=146.7
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|+.+|+.+.|+|++..++++|++|+.+++||+.+ ......+.+|++-|.|.+|+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~---------------------a~v~~~l~~htDYVR~g~~~ 162 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST---------------------AYVQAELSGHTDYVRCGDIS 162 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC---------------------cEEEEEecCCcceeEeeccc
Confidence 567789999999999999999999999999999999998 23355789999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|.....++||+.||+|++||++....+. .-..|..+|.++.+-|.|. +||+++ ...|++||+-++.+.+.....
T Consensus 163 ~~~~hivvtGsYDg~vrl~DtR~~~~~v----~elnhg~pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~~G~qll~~~~~ 236 (487)
T KOG0310|consen 163 PANDHIVVTGSYDGKVRLWDTRSLTSRV----VELNHGCPVESVLALPSGS-LIASAG-GNSVKVWDLTTGGQLLTSMFN 236 (487)
T ss_pred cCCCeEEEecCCCceEEEEEeccCCcee----EEecCCCceeeEEEcCCCC-EEEEcC-CCeEEEEEecCCceehhhhhc
Confidence 9987799999999999999999865433 2335899999999999988 888887 468999999987766666666
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|...|+|+.+..++ ..|+|||-||.|++||+.+.+
T Consensus 237 H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~K 271 (487)
T KOG0310|consen 237 HNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNYK 271 (487)
T ss_pred ccceEEEEEeecCC-ceEeecccccceEEEEccceE
Confidence 99999999999988 899999999999999987654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=178.90 Aligned_cols=167 Identities=19% Similarity=0.319 Sum_probs=144.5
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|+|.|++++|+|++ .+||||+.|..|.+|++... .+-...+++|.+.|..|.|.
T Consensus 41 m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gd--------------------ceN~~~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGD--------------------CENFWVLKGHSGAVMELHGM 99 (338)
T ss_pred hhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEecccc--------------------ccceeeeccccceeEeeeec
Confidence 3567999999999999988 79999999999999997662 34456778999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
+++. .+++++.|.+|+.||+.++.. .+.+.+|+.-|+.+.-+.-+..++.|++.||+++|||+|. +.++.++.
T Consensus 100 ~d~s-~i~S~gtDk~v~~wD~~tG~~----~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-k~~~~t~~- 172 (338)
T KOG0265|consen 100 RDGS-HILSCGTDKTVRGWDAETGKR----IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-KEAIKTFE- 172 (338)
T ss_pred cCCC-EEEEecCCceEEEEeccccee----eehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-cchhhccc-
Confidence 9998 999999999999999998544 3788999999999997777777899999999999999998 44555553
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
....++++.|+..+ .-+.+|+-|+.|++||+|+..
T Consensus 173 ~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d 207 (338)
T KOG0265|consen 173 NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKND 207 (338)
T ss_pred cceeEEEEEecccc-cceeeccccCceeeeccccCc
Confidence 34568999999988 789999999999999998764
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=171.25 Aligned_cols=173 Identities=22% Similarity=0.393 Sum_probs=145.9
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE-cCCCCCeEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-GGHKDEGYA 234 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~ 234 (358)
++...+.+|++.|..++|+|....+||||+.|..|+||+... ... ..+...+ .+|+..|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s-----------------~~ck~vld~~hkrsVRs 66 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDS-----------------WTCKTVLDDGHKRSVRS 66 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CCc-----------------EEEEEeccccchheeee
Confidence 455778899999999999998337999999999999999985 111 1222223 379999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC--Ce
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SA 312 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~~ 312 (358)
++|+|.++ +|++|+.|.++.||.-.. +.+.. ...+.||...|-+++|+++|. +||+|+.|++|-||.+.... .+
T Consensus 67 vAwsp~g~-~La~aSFD~t~~Iw~k~~-~efec-v~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 67 VAWSPHGR-YLASASFDATVVIWKKED-GEFEC-VATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred eeecCCCc-EEEEeeccceEEEeecCC-CceeE-EeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEE
Confidence 99999999 999999999999998653 33222 467889999999999999999 99999999999999988533 37
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+..+..|..+|..+.|+|.. .+|+|+|.|.+|++|.-.
T Consensus 143 ~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDE 180 (312)
T ss_pred EeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeec
Confidence 77789999999999999998 899999999999999754
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=178.21 Aligned_cols=167 Identities=18% Similarity=0.269 Sum_probs=147.7
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+..|.+.|.++..+|+. +++|||+.|-..+||++.. +.....+.+|+..|+++.|+
T Consensus 58 ~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~---------------------ge~~~eltgHKDSVt~~~Fs 115 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDIST---------------------GEFAGELTGHKDSVTCCSFS 115 (399)
T ss_pred eehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccC---------------------CcceeEecCCCCceEEEEEc
Confidence 6778999999999999955 8999999999999999988 45677899999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
.++. +||||+.+|.|+||...++... ..+..--..+.=+.|||.+. +|++|+.||.|-+|.+.+. .....+.+
T Consensus 116 hdgt-lLATGdmsG~v~v~~~stg~~~----~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~-~~~kv~~G 188 (399)
T KOG0296|consen 116 HDGT-LLATGDMSGKVLVFKVSTGGEQ----WKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ-ALCKVMSG 188 (399)
T ss_pred cCce-EEEecCCCccEEEEEcccCceE----EEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc-ceeeEecC
Confidence 9998 9999999999999999875432 23333456678889999888 9999999999999999884 46677899
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
|+.++++-.|.|+| ..+++|..||+|++||+.++++
T Consensus 189 h~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred CCCCcccccccCCC-ceEEEEecCceEEEEecCCCce
Confidence 99999999999999 9999999999999999998864
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-23 Score=175.73 Aligned_cols=239 Identities=18% Similarity=0.319 Sum_probs=182.6
Q ss_pred CCCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCC
Q 018322 45 EEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPN 124 (358)
Q Consensus 45 ~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~ 124 (358)
++..|+..++. |.+++|..-+.|+|+..|. ||. +++| ...+|.||++..
T Consensus 82 ~~s~e~~~~a~-------fd~~YP~tK~~wiPd~~g~----~pd----lLAT-----s~D~LRlWri~~----------- 130 (364)
T KOG0290|consen 82 EDSGELVEDAN-------FDHPYPVTKLMWIPDSKGV----YPD----LLAT-----SSDFLRLWRIGD----------- 130 (364)
T ss_pred cCCCceeccCC-------CCCCCCccceEecCCcccc----Ccc----hhhc-----ccCeEEEEeccC-----------
Confidence 44556666554 7899999999999997543 663 3445 234999999830
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEE-EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 018322 125 KPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQ-LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALA 203 (358)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~ 203 (358)
+ +.... -+..+. .+...|.+++++..|+.-.++++.|+|-|.+..|||+....
T Consensus 131 -----------e---------e~~~~--~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~---- 184 (364)
T KOG0290|consen 131 -----------E---------ESRVE--LQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV---- 184 (364)
T ss_pred -----------c---------CCcee--hhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc----
Confidence 0 00000 011222 22334678999999999999999999999999999998731
Q ss_pred cccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEE
Q 018322 204 ESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~ 283 (358)
.......+..|..+|+.++|...+.+.|||.+.||.+++||+|......+.. .-..-..+...++
T Consensus 185 --------------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY-E~p~~~~pLlRLs 249 (364)
T KOG0290|consen 185 --------------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY-EDPSPSTPLLRLS 249 (364)
T ss_pred --------------ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe-cCCCCCCcceeec
Confidence 1223455778999999999999887799999999999999998743321111 1111246788999
Q ss_pred ECCCCCCEEEEEECCC-cEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 284 WSPTEPDVFASCSVDG-HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 284 ~sp~~~~~las~s~Dg-~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
|+++..+++|+-..|+ .|.|.|+|.+..++..+..|.+.||.|+|.|.....|+|+|+|.++.|||+.+.-.
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 9999999999987764 79999999998899999999999999999999989999999999999999986543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-23 Score=170.71 Aligned_cols=165 Identities=20% Similarity=0.356 Sum_probs=144.5
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+..|+++|+.++|+-+| +++.|++.|.+|++|+... +..+.++.+|..+|..++.+
T Consensus 11 ~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~r---------------------g~liktYsghG~EVlD~~~s 68 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLR---------------------GALIKTYSGHGHEVLDAALS 68 (307)
T ss_pred eeecccccceEEEEEccCC-CEEEEcCCCceEEeecccc---------------------cceeeeecCCCceeeecccc
Confidence 4566799999999999999 7999999999999999876 68889999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-CeeEEEe
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFK 317 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~~~~ 317 (358)
.++. .|++|+.|..|.+||+.++.. .+.+.+|.+.|+.|+|+.... ++++|+.|.++|+||.|+.. .|++.+.
T Consensus 69 ~Dns-kf~s~GgDk~v~vwDV~TGkv----~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 69 SDNS-KFASCGGDKAVQVWDVNTGKV----DRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred cccc-ccccCCCCceEEEEEcccCee----eeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhh
Confidence 9998 999999999999999988433 378999999999999998887 99999999999999999843 3777776
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.....|.+|..+. +.|++|+.||+++.||+|.++
T Consensus 143 ea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~ 176 (307)
T KOG0316|consen 143 EAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGT 176 (307)
T ss_pred hhcCceeEEEecc---cEEEeeccCCcEEEEEeecce
Confidence 6677788888775 568888888888888888765
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=167.33 Aligned_cols=170 Identities=24% Similarity=0.362 Sum_probs=142.9
Q ss_pred CCeEEEEEecCC-CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCe
Q 018322 154 TPILQLRKVAHQ-GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (358)
Q Consensus 154 ~~~~~~~~~~H~-~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (358)
..+. .+.+.|. +.||++...|++ ..||+++. ..|||||++.. +..|+.+|.+|...|
T Consensus 29 tG~C-~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~-------------------np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 29 TGIC-SRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSN-------------------NPNPVATFEGHTKNV 86 (311)
T ss_pred cCeE-EEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCC-------------------CCCceeEEeccCCce
Confidence 4455 3445554 799999999999 67777665 57999999883 346899999999999
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC--
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-- 310 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-- 310 (358)
+++.|..+|. .++||+.||+++|||++.... .....|.++|++|..+|+.. -|++|..+|.|++||++...
T Consensus 87 taVgF~~dgr-WMyTgseDgt~kIWdlR~~~~-----qR~~~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 87 TAVGFQCDGR-WMYTGSEDGTVKIWDLRSLSC-----QRNYQHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred EEEEEeecCe-EEEecCCCceEEEEeccCccc-----chhccCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccc
Confidence 9999999998 999999999999999998432 33445779999999999887 89999999999999997520
Q ss_pred ----------------------------------------------CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCC
Q 018322 311 ----------------------------------------------SALTSFKAHNADVNVISWNRLASCLLASGSDDGT 344 (358)
Q Consensus 311 ----------------------------------------------~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~ 344 (358)
.|+..+++|...+..+.++|++ .+||++|.|.+
T Consensus 160 ~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdkt 238 (311)
T KOG0315|consen 160 HELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKT 238 (311)
T ss_pred cccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC-cEEEeecCCce
Confidence 1344678899999999999999 99999999999
Q ss_pred EEEEeCCCC
Q 018322 345 FSIHDLRLL 353 (358)
Q Consensus 345 i~iwDlr~~ 353 (358)
++||++..+
T Consensus 239 v~iwn~~~~ 247 (311)
T KOG0315|consen 239 VKIWNTDDF 247 (311)
T ss_pred EEEEecCCc
Confidence 999999876
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=162.51 Aligned_cols=192 Identities=20% Similarity=0.314 Sum_probs=148.1
Q ss_pred CCeEE-EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccccc------------------------
Q 018322 154 TPILQ-LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETI------------------------ 208 (358)
Q Consensus 154 ~~~~~-~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~------------------------ 208 (358)
.|... .+...|.|.|+|.+|+|.| .++|||+.|.+|++.-++.........+..
T Consensus 77 pp~v~~kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il 155 (350)
T KOG0641|consen 77 PPSVLCKRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAIL 155 (350)
T ss_pred CCeEEeeeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEE
Confidence 34444 4556689999999999999 799999999999998876633221111100
Q ss_pred ccCCCC-------CCCCCCCcEEEcCCCCCeEEE-EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcccc---CCC
Q 018322 209 VGQGAP-------QVSNQSPLVKFGGHKDEGYAI-DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG---HSA 277 (358)
Q Consensus 209 ~~~~~~-------~~~~~~~~~~~~~h~~~v~~l-~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~---h~~ 277 (358)
...+.. ....+++...+.||++-|.+| .|+ +. .+++|+.|.+|++||++-.......-..+.+ ..+
T Consensus 156 ~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn--~~-m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gless 232 (350)
T KOG0641|consen 156 ASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWN--GA-MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESS 232 (350)
T ss_pred EecCCCcceEEEeecCCCCcceeecCCcccEEEEEEec--Cc-EEEccCCCceEEEEeeeccceeeeccCcccCCCcccc
Confidence 000000 014677888899999988877 464 44 9999999999999999875433322233333 237
Q ss_pred cEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 278 SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 278 ~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.|.+++..|.|+ ++++|..|.+..+||+|.+ .+++++..|...|.|+.|+|.. .++++|+.|..|++-|+..
T Consensus 233 avaav~vdpsgr-ll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 233 AVAAVAVDPSGR-LLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred eeEEEEECCCcc-eeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeeccc
Confidence 899999999999 9999999999999999975 6899999999999999999988 9999999999999999863
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-23 Score=194.38 Aligned_cols=176 Identities=18% Similarity=0.282 Sum_probs=150.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..-.+|.+.|.+|+++..+..+|+++|.|+++++|++........ ........+...|...|.|++.+
T Consensus 405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~------------~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF------------PIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc------------cceehhhHHHHhhcccccceEec
Confidence 455689999999999998889999999999999999987111000 00112222446799999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|... ++||||.|++.+||++.. ... ...+.||+..|.||+|+|... ++||||.|++|+||.+.+ ..|+.++.+
T Consensus 473 ~ndk-LiAT~SqDktaKiW~le~-~~l---~~vLsGH~RGvw~V~Fs~~dq-~laT~SgD~TvKIW~is~-fSClkT~eG 545 (775)
T KOG0319|consen 473 PNDK-LIATGSQDKTAKIWDLEQ-LRL---LGVLSGHTRGVWCVSFSKNDQ-LLATCSGDKTVKIWSIST-FSCLKTFEG 545 (775)
T ss_pred CCCc-eEEecccccceeeecccC-ceE---EEEeeCCccceEEEEeccccc-eeEeccCCceEEEEEecc-ceeeeeecC
Confidence 9998 999999999999999974 222 367899999999999999998 999999999999999998 479999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|...|..++|-.++ ..|+||+.||.|+||++.+..
T Consensus 546 H~~aVlra~F~~~~-~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 546 HTSAVLRASFIRNG-KQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred ccceeEeeeeeeCC-cEEEeccCCCcEEEEeccchh
Confidence 99999999999999 899999999999999998753
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=198.03 Aligned_cols=172 Identities=21% Similarity=0.359 Sum_probs=148.5
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+..|...|+++.|++..+++|++||.||+|++||++. .+...++.+....|..+.|+
T Consensus 127 ~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~---------------------~~S~~t~~~nSESiRDV~fs 185 (839)
T KOG0269|consen 127 TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS---------------------KKSKSTFRSNSESIRDVKFS 185 (839)
T ss_pred hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec---------------------ccccccccccchhhhceeec
Confidence 456679999999999999999999999999999999998 45556677778899999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-eeEEEe
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-ALTSFK 317 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-~~~~~~ 317 (358)
|....+|+++...|.+.+||+|...++. ..+..|.++|.++.|+|+.. +|||||.|+.|+|||...+.. +++++.
T Consensus 186 p~~~~~F~s~~dsG~lqlWDlRqp~r~~---~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~~~~~~tIn 261 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDLRQPDRCE---KKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSRAKPKHTIN 261 (839)
T ss_pred cCCCceEEEecCCceEEEeeccCchhHH---HHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCCCccceeEEe
Confidence 9887799999999999999999877765 67889999999999999766 999999999999999986432 444443
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeC--CCCEEEEeCCCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSD--DGTFSIHDLRLLKVR 356 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~--Dg~i~iwDlr~~~~~ 356 (358)
...+|.+++|-|..++.||+++. |-.|+|||+|.+--|
T Consensus 262 -Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 262 -TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred -ecceeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence 45689999999999889999874 779999999976544
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-23 Score=176.89 Aligned_cols=193 Identities=22% Similarity=0.358 Sum_probs=156.5
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc--------------cccccccccCCC-----CCC
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNA--------------LAESETIVGQGA-----PQV 216 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~--------------~~~~~~~~~~~~-----~~~ 216 (358)
....+..+|.|.||+|+|++++ .+++|++.|++.+||...-.... .+..+....... ...
T Consensus 181 ~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 181 ACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred cceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 3446778999999999999999 89999999999999983221100 000000000000 001
Q ss_pred CCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE
Q 018322 217 SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS 296 (358)
Q Consensus 217 ~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s 296 (358)
.-..|+..+.+|...|.+.+|-..+. .+++++.|.+..+||+.++ .. ...+.||....+.++-+|+.+ ++++.+
T Consensus 260 tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEtg-e~---v~~LtGHd~ELtHcstHptQr-LVvTsS 333 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVETG-EV---VNILTGHDSELTHCSTHPTQR-LVVTSS 333 (481)
T ss_pred eeeeeeeeeeccccceEehhhhcCcc-eeeeeeccccceeeeeccC-ce---eccccCcchhccccccCCcce-EEEEec
Confidence 23467889999999999999999998 9999999999999999884 33 378999999999999999998 999999
Q ss_pred CCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 297 VDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 297 ~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
.|.+.|+||+|..-..+..|.+|...|+++.|+.+. .+++|++|.+|+|||||+.+.||
T Consensus 334 rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRspl 392 (481)
T KOG0300|consen 334 RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPL 392 (481)
T ss_pred cCceeEeccchhhcceeeeecccccceeEEEEecCC--ceeecCCCceEEEeeeccccCcc
Confidence 999999999997556777889999999999999866 78999999999999999999886
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=178.99 Aligned_cols=234 Identities=21% Similarity=0.307 Sum_probs=164.9
Q ss_pred hHHHhhhcccccCcceeEEEEeccCCCc-cccCCc-eEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCC
Q 018322 55 TAYNSLHAFHIGWPCLSFDIVRDTLGLV-RNEFPH-TAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDED 132 (358)
Q Consensus 55 ~~Y~~~~~~~~~wP~ls~~~~~d~~~~~-~~~~~~-~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~ 132 (358)
++|.-.......-||.+.+++.+....- -..|.+ ..||+.++ .+-...||.+.+.
T Consensus 200 sll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaS-----kD~Taiiw~v~~d------------------ 256 (519)
T KOG0293|consen 200 SLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASAS-----KDSTAIIWIVVYD------------------ 256 (519)
T ss_pred hhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeecc-----CCceEEEEEEecC------------------
Confidence 4455555666778888888777643210 012322 24555555 3446677887410
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCC
Q 018322 133 VDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG 212 (358)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~ 212 (358)
..-.+..++++|..+|.-|+|+|+. +++++|+.+..+.+||+.+
T Consensus 257 --------------------~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~t--------------- 300 (519)
T KOG0293|consen 257 --------------------VHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDT--------------- 300 (519)
T ss_pred --------------------cceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCc---------------
Confidence 1345668999999999999999999 6777888888899999987
Q ss_pred CCCCCCCCCcEEE-cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCC--Ccc-------------------c---
Q 018322 213 APQVSNQSPLVKF-GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA--TWN-------------------V--- 267 (358)
Q Consensus 213 ~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~--~~~-------------------~--- 267 (358)
+.....+ .+|...+.+.+|.|++. .+++|+.|++|..||+...- .|. .
T Consensus 301 ------gd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 301 ------GDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred ------chhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 2333222 23557899999999998 99999999999999986420 000 0
Q ss_pred -------------------------------------------------------CCCccccCCCc--EEEEEECCCCCC
Q 018322 268 -------------------------------------------------------DPNPFIGHSAS--VEDLQWSPTEPD 290 (358)
Q Consensus 268 -------------------------------------------------------~~~~~~~h~~~--V~~v~~sp~~~~ 290 (358)
..+.+.||+.. +-.-+|--....
T Consensus 374 ~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 374 VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 00111133221 111123222334
Q ss_pred EEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 291 VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
++|+||.|+.|+||+.+++ .++..+.+|...|||++|||..+.++|+||+||+|+||-.....+
T Consensus 454 fiaSGSED~kvyIWhr~sg-kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~~r 517 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISG-KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDNNR 517 (519)
T ss_pred eEEecCCCceEEEEEccCC-ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcccc
Confidence 8999999999999999985 588999999999999999999999999999999999998875543
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=176.57 Aligned_cols=167 Identities=21% Similarity=0.332 Sum_probs=151.4
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
...+|...|.++.|.|.| ..+++++.|.+|++|++.+ +-++.+|.+|..-+..++.+.
T Consensus 188 s~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~t---------------------g~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 188 SLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDT---------------------GYCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred HhcCcccceeeEEEEecC-CeeeecccccceeEEeccc---------------------ceeEEeccCchHhEEEEEecC
Confidence 457899999999999999 8999999999999999998 688899999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC--------------CCEEEEEECCCcEEEEE
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--------------PDVFASCSVDGHIAIWD 305 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--------------~~~las~s~Dg~I~iwD 305 (358)
+|. ++|+|+.|.+|++|-+.+... ...+..|.-+|.+++|.|.. ..++++++.|++|++||
T Consensus 246 DGt-i~As~s~dqtl~vW~~~t~~~----k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd 320 (406)
T KOG0295|consen 246 DGT-IIASCSNDQTLRVWVVATKQC----KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD 320 (406)
T ss_pred Cee-EEEecCCCceEEEEEeccchh----hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe
Confidence 998 999999999999999977422 25678899999999998742 13899999999999999
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+.++ .++.++.+|...|..++|+|.| .+|+|+.+|+++++||+++.+.
T Consensus 321 v~tg-~cL~tL~ghdnwVr~~af~p~G-kyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 321 VSTG-MCLFTLVGHDNWVRGVAFSPGG-KYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred ccCC-eEEEEEecccceeeeeEEcCCC-eEEEEEecCCcEEEEEecccee
Confidence 9996 6999999999999999999999 9999999999999999998764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=195.81 Aligned_cols=235 Identities=23% Similarity=0.370 Sum_probs=177.9
Q ss_pred ceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 018322 69 CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDE 148 (358)
Q Consensus 69 ~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (358)
-+|+|+-||+ ..|++|+|-.. ..+.||+...+..... +.++
T Consensus 16 IfSIdv~pdg-----------~~~aTgGq~~d---~~~~iW~~~~vl~~~~-------------------------~~~~ 56 (942)
T KOG0973|consen 16 IFSIDVHPDG-----------VKFATGGQVLD---GGIVIWSQDPVLDEKE-------------------------EKNE 56 (942)
T ss_pred EEEEEecCCc-----------eeEecCCcccc---ccceeeccccccchhh-------------------------hhhc
Confidence 6799999986 58888887642 3556998753321111 1111
Q ss_pred CCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC
Q 018322 149 EGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH 228 (358)
Q Consensus 149 ~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 228 (358)
.-|.+..+...|.+.|+|++|+|+| .+||+||+|+.|.||....... ................+.+..+.+|
T Consensus 57 ----~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~---~~~fgs~g~~~~vE~wk~~~~l~~H 128 (942)
T KOG0973|consen 57 ----NLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGS---GTVFGSTGGAKNVESWKVVSILRGH 128 (942)
T ss_pred ----ccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCC---cccccccccccccceeeEEEEEecC
Confidence 1456668888999999999999999 8999999999999999885100 0001111222333457788899999
Q ss_pred CCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 229 KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 229 ~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
...|..++|+|++. +|++++.|++|.||+.++. .. ...+.+|.+.|-.+.|.|.|+ +||+-+.|++|+||.+..
T Consensus 129 ~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF-~~---~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 129 DSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTF-EL---LKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSD 202 (942)
T ss_pred CCccceeccCCCcc-EEEEecccceEEEEccccc-ee---eeeeecccccccceEECCccC-eeeeecCCceEEEEEccc
Confidence 99999999999998 9999999999999999886 32 477899999999999999999 999999999999998632
Q ss_pred C----------------------------------------C-----------CeeEEEecCCCCeEEEEEeCC------
Q 018322 309 G----------------------------------------K-----------SALTSFKAHNADVNVISWNRL------ 331 (358)
Q Consensus 309 ~----------------------------------------~-----------~~~~~~~~h~~~V~~i~~~p~------ 331 (358)
- . ..-..+-+|.+++.+++|||.
T Consensus 203 w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~ 282 (942)
T KOG0973|consen 203 WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNN 282 (942)
T ss_pred ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccc
Confidence 0 0 011245689999999999981
Q ss_pred --C----C----cEEEEEeCCCCEEEEeCCCCCCC
Q 018322 332 --A----S----CLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 332 --~----~----~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
| . .++|+||.|++|.||.....++.
T Consensus 283 ~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 283 KNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred ccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 1 1 17899999999999998555443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-24 Score=191.69 Aligned_cols=171 Identities=20% Similarity=0.337 Sum_probs=150.8
Q ss_pred CeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
..+.+.+.+|+..|++++|.|...++|++|+.|+.|+||++.. ...++.+|.||..+|.+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--------------------~~~~lrtf~gH~k~Vrd 263 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--------------------DRRCLRTFKGHRKPVRD 263 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec--------------------Ccceehhhhcchhhhhh
Confidence 3456788899999999999995559999999999999999987 46889999999999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
++|+..+. .|+|++.|+.|++||+.++ +.. ..|. -...++++.|+|++.++|++|+.|+.|+.||+|++ ..++
T Consensus 264 ~~~s~~g~-~fLS~sfD~~lKlwDtETG-~~~---~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~-kvvq 336 (503)
T KOG0282|consen 264 ASFNNCGT-SFLSASFDRFLKLWDTETG-QVL---SRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG-KVVQ 336 (503)
T ss_pred hhccccCC-eeeeeecceeeeeeccccc-eEE---EEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch-HHHH
Confidence 99999998 9999999999999999884 322 2222 23467899999999889999999999999999996 5788
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.+..|-+.|+.|.|-+++ ..+++.++|++++||+.+..
T Consensus 337 eYd~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred HHHhhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCC
Confidence 888999999999999999 89999999999999998764
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.4e-22 Score=173.83 Aligned_cols=169 Identities=21% Similarity=0.381 Sum_probs=150.7
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
......++.+|...|.-++.+.+| .++|+++.|.+|++|-+.. .++...+..|.-+|.
T Consensus 224 tg~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t---------------------~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 224 TGYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVAT---------------------KQCKAELREHEHPVE 281 (406)
T ss_pred cceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEecc---------------------chhhhhhhccccceE
Confidence 344557888999999999999999 8999999999999999987 566677899999999
Q ss_pred EEEeCCCCC--------------CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC
Q 018322 234 AIDWNPITT--------------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 234 ~l~~s~~~~--------------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (358)
+++|.|... .++++|+.|++|++||+.++ .+. .++.+|...|.+++|+|.|+ +|+||.+|+
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL---~tL~ghdnwVr~~af~p~Gk-yi~ScaDDk 356 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCL---FTLVGHDNWVRGVAFSPGGK-YILSCADDK 356 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEE---EEEecccceeeeeEEcCCCe-EEEEEecCC
Confidence 999987421 28999999999999999884 433 67899999999999999999 999999999
Q ss_pred cEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
++++||+++ .+++..+.+|..-|+++.|+.+. .+++||+-|.++++|.-|
T Consensus 357 tlrvwdl~~-~~cmk~~~ah~hfvt~lDfh~~~-p~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 357 TLRVWDLKN-LQCMKTLEAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWECR 406 (406)
T ss_pred cEEEEEecc-ceeeeccCCCcceeEEEecCCCC-ceEEeccccceeeeeecC
Confidence 999999998 47999999999999999999988 799999999999999754
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-23 Score=180.02 Aligned_cols=224 Identities=20% Similarity=0.315 Sum_probs=167.8
Q ss_pred eChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEee---cCCCCCCceEEEEEeeccCCccccCCCCCCCC
Q 018322 52 CDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGT---QAEKPSWNSIGVFKVSNISGKRRELVPNKPSN 128 (358)
Q Consensus 52 ~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT---~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~ 128 (358)
.=|.+|.-+++..-.|-|=-+-.-+-+ +|.......|.+--- --++-.+|.|.||+..
T Consensus 165 l~pki~~di~~idsNWr~Gr~~~~rin---c~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n---------------- 225 (499)
T KOG0281|consen 165 LYPKIIQDIETIESNWRCGRHLLQRIN---CRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKN---------------- 225 (499)
T ss_pred hhHHHHHHHhhhhcchhccceeeeeec---CCcccCCceEEEEecchhhhcccccCceEEeccc----------------
Confidence 346788888888888887544332221 122111223322100 0112367888888652
Q ss_pred CCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccccc
Q 018322 129 DDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETI 208 (358)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~ 208 (358)
.-.....+.+|+|.|.|+.|.. .++++|+.|.+|+|||+++
T Consensus 226 -------------------------~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t----------- 266 (499)
T KOG0281|consen 226 -------------------------SLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT----------- 266 (499)
T ss_pred -------------------------cHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC-----------
Confidence 2223356779999999999986 6999999999999999998
Q ss_pred ccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC
Q 018322 209 VGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE 288 (358)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~ 288 (358)
+.++.++.+|...|..+.|+. |++++++.|.+|.+||+..+.. ....+.+.||.++|+.++|+.
T Consensus 267 ----------ge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~-it~rrVLvGHrAaVNvVdfd~-- 330 (499)
T KOG0281|consen 267 ----------GEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFDD-- 330 (499)
T ss_pred ----------CchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH-HHHHHHHhhhhhheeeecccc--
Confidence 789999999999999999986 6999999999999999987542 323356789999999999864
Q ss_pred CCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 289 PDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 289 ~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
. ++++++.|.+|++|++.+. ..+.++.+|...|.|+++. + +++++|+.|.+|++||+..+.
T Consensus 331 k-yIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 331 K-YIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred c-eEEEecCCceEEEEeccce-eeehhhhcccccceehhcc--C-eEEEecCCCceEEEEeccccH
Confidence 4 8999999999999999884 5788888888888888775 3 788888888888888887654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=199.75 Aligned_cols=163 Identities=21% Similarity=0.283 Sum_probs=135.2
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.+...|.++.|++....+||+++.||+|+|||+.. .+.+..+.+|...|++++|+|...
T Consensus 530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~---------------------~~~~~~~~~H~~~V~~l~~~p~~~ 588 (793)
T PLN00181 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR---------------------SQLVTEMKEHEKRVWSIDYSSADP 588 (793)
T ss_pred cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC---------------------CeEEEEecCCCCCEEEEEEcCCCC
Confidence 35678999999987557999999999999999976 466778889999999999997433
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
.+|++|+.||+|++||++++.. . ..+.. ...|.+++|++....+|++|+.||.|++||++....++..+.+|...
T Consensus 589 ~~L~Sgs~Dg~v~iWd~~~~~~-~---~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~ 663 (793)
T PLN00181 589 TLLASGSDDGSVKLWSINQGVS-I---GTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663 (793)
T ss_pred CEEEEEcCCCEEEEEECCCCcE-E---EEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCC
Confidence 3999999999999999986432 2 33333 46799999965444499999999999999999865566778899999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
|+++.|. ++ .+|++++.|++|+|||++..
T Consensus 664 V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 664 VSYVRFV-DS-STLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred EEEEEEe-CC-CEEEEEECCCEEEEEeCCCC
Confidence 9999997 45 68999999999999999853
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-21 Score=170.62 Aligned_cols=202 Identities=23% Similarity=0.368 Sum_probs=165.3
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-|..++.|.|++ .++++|+ .++.|.+|++..
T Consensus 9 ~~~i~~~~~~~~~-----------~~l~~~~-----~~g~i~i~~~~~-------------------------------- 40 (289)
T cd00200 9 TGGVTCVAFSPDG-----------KLLATGS-----GDGTIKVWDLET-------------------------------- 40 (289)
T ss_pred CCCEEEEEEcCCC-----------CEEEEee-----cCcEEEEEEeeC--------------------------------
Confidence 3577788898874 4677776 356999998831
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
.........|...+..+.|+|++ .++++++.+|.|++|++.. ......+
T Consensus 41 ---------~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~---------------------~~~~~~~ 89 (289)
T cd00200 41 ---------GELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLET---------------------GECVRTL 89 (289)
T ss_pred ---------CCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCc---------------------ccceEEE
Confidence 11234556789999999999998 7899999999999999986 3556677
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
..|...+.++.|++.+. ++++++.+|.|++|++++... . ..+..|...|.+++|+|++. ++++++.++.|++||
T Consensus 90 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~---~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d 163 (289)
T cd00200 90 TGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKC-L---TTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWD 163 (289)
T ss_pred eccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEE-E---EEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEE
Confidence 78888999999999976 888888899999999985332 2 44557888999999999976 888888899999999
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
++.+ .++..+..|...|+++.|+|++ ..|++++.+|.|++||++..+
T Consensus 164 ~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 164 LRTG-KCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred cccc-ccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCc
Confidence 9974 4667778899899999999999 788888889999999998654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=195.43 Aligned_cols=181 Identities=20% Similarity=0.363 Sum_probs=142.7
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc------ccc----------------ccc-ccc------c---
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN------ALA----------------ESE-TIV------G--- 210 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~------~~~----------------~~~-~~~------~--- 210 (358)
+|.|.|+++.|+++| ++||+||.||.|+||.+..... ... ... ... .
T Consensus 265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 799999999999999 8999999999999999876110 000 000 000 0
Q ss_pred CCCC-------CCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEE
Q 018322 211 QGAP-------QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283 (358)
Q Consensus 211 ~~~~-------~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~ 283 (358)
.... -....+|+..|.||.+.|..|.|+..+ +|+|++.|.+|+||++.. ..+. . ...|...|+||+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~-~~CL---~-~F~HndfVTcVa 416 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGR-KECL---K-VFSHNDFVTCVA 416 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCC-ccee---e-EEecCCeeEEEE
Confidence 0000 013567888999999999999999875 899999999999999965 2222 3 345999999999
Q ss_pred ECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 284 ~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|+|...++|++|+-||.||||++.. ..+.....-..-|++++|.|+| ...+.|+.+|.+++|+.+.++
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISD--KKVVDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred ecccCCCcEeecccccceEEeecCc--CeeEeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCe
Confidence 9998888999999999999999986 3444444444779999999999 999999999999999998765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-21 Score=197.77 Aligned_cols=168 Identities=19% Similarity=0.317 Sum_probs=139.8
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
....+.+|.+.|+++.|+|.++.+|+||+.||+|+|||+.. ...+..+..+ ..+.++.
T Consensus 567 ~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~---------------------~~~~~~~~~~-~~v~~v~ 624 (793)
T PLN00181 567 LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ---------------------GVSIGTIKTK-ANICCVQ 624 (793)
T ss_pred EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC---------------------CcEEEEEecC-CCeEEEE
Confidence 33556789999999999985558999999999999999976 3455556544 5799999
Q ss_pred eCC-CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC-----C
Q 018322 237 WNP-ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-----K 310 (358)
Q Consensus 237 ~s~-~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-----~ 310 (358)
|++ .+. +|++|+.||.|++||+++.... ...+.+|...|.+++|. ++. .|++++.|++|+|||++.+ .
T Consensus 625 ~~~~~g~-~latgs~dg~I~iwD~~~~~~~---~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~ 698 (793)
T PLN00181 625 FPSESGR-SLAFGSADHKVYYYDLRNPKLP---LCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINE 698 (793)
T ss_pred EeCCCCC-EEEEEeCCCeEEEEECCCCCcc---ceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCC
Confidence 965 465 9999999999999999874322 24567899999999997 455 8999999999999999853 2
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.++..+.+|...+++++|+|++ .+|++|+.||.|+||+....
T Consensus 699 ~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 699 TPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred cceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCC
Confidence 4677888999999999999999 89999999999999997654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=168.69 Aligned_cols=164 Identities=21% Similarity=0.335 Sum_probs=143.4
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
+.+|.++|..+.|++++ ..+.+++.|.+|+.||+.. ++.++.+++|..-+.+++-+..
T Consensus 86 lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~t---------------------G~~~rk~k~h~~~vNs~~p~rr 143 (338)
T KOG0265|consen 86 LKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAET---------------------GKRIRKHKGHTSFVNSLDPSRR 143 (338)
T ss_pred eccccceeEeeeeccCC-CEEEEecCCceEEEEeccc---------------------ceeeehhccccceeeecCcccc
Confidence 34999999999999999 7899999999999999998 6888899999999999996666
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
|..++.||+.||+++|||+|+.... +.+. .+-.++++.|.-.+. .+.+|+-|+.|++||+|.. .....+.+|.
T Consensus 144 g~~lv~SgsdD~t~kl~D~R~k~~~----~t~~-~kyqltAv~f~d~s~-qv~sggIdn~ikvWd~r~~-d~~~~lsGh~ 216 (338)
T KOG0265|consen 144 GPQLVCSGSDDGTLKLWDIRKKEAI----KTFE-NKYQLTAVGFKDTSD-QVISGGIDNDIKVWDLRKN-DGLYTLSGHA 216 (338)
T ss_pred CCeEEEecCCCceEEEEeecccchh----hccc-cceeEEEEEeccccc-ceeeccccCceeeeccccC-cceEEeeccc
Confidence 7657889999999999999974431 2232 356799999998887 8899999999999999984 5788899999
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..|+.|+.+|.| .++.+-+.|.++++||+|-+-
T Consensus 217 DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 217 DTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred CceeeEEeccCC-CccccccccceEEEEEecccC
Confidence 999999999999 899999999999999999653
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=182.44 Aligned_cols=173 Identities=21% Similarity=0.360 Sum_probs=151.2
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
+..+...+.--.-+|...+|.+.. +.+++|++|..|+||++++ ...+..|..|.+-|.
T Consensus 44 tqtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt---------------------~ekV~~FeAH~DyIR 101 (794)
T KOG0276|consen 44 TQTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNT---------------------GEKVKTFEAHSDYIR 101 (794)
T ss_pred cceeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEeccc---------------------ceeeEEeecccccee
Confidence 334444444456788888888877 7999999999999999998 677889999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
+|+.+|..+ +++|+|.|-+|++||.... |.. .+.|.||+.-|.+|+|+|..++.||||+-|++|++|.+.++ .+.
T Consensus 102 ~iavHPt~P-~vLtsSDDm~iKlW~we~~--wa~-~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~-~~n 176 (794)
T KOG0276|consen 102 SIAVHPTLP-YVLTSSDDMTIKLWDWENE--WAC-EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP-HPN 176 (794)
T ss_pred eeeecCCCC-eEEecCCccEEEEeeccCc--eee-eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC-CCc
Confidence 999999999 9999999999999999653 332 47899999999999999999999999999999999999984 688
Q ss_pred EEEecCCCCeEEEEEeCCC-CcEEEEEeCCCCEEEEeCCCC
Q 018322 314 TSFKAHNADVNVISWNRLA-SCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~-~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.++.+|...||||.+-+.+ ..+|+||++|.+|+|||..+.
T Consensus 177 fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 177 FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence 9999999999999998755 359999999999999998764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=188.30 Aligned_cols=214 Identities=18% Similarity=0.302 Sum_probs=178.0
Q ss_pred hhhccc-ccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCC
Q 018322 59 SLHAFH-IGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSES 137 (358)
Q Consensus 59 ~~~~~~-~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (358)
+||.|. .+-|.-.++|.|.. -.||.|. ++-.|.||.+.
T Consensus 43 li~rFdeHdGpVRgv~FH~~q-----------plFVSGG-----DDykIkVWnYk------------------------- 81 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQ-----------PLFVSGG-----DDYKIKVWNYK------------------------- 81 (1202)
T ss_pred HHhhhhccCCccceeeecCCC-----------CeEEecC-----CccEEEEEecc-------------------------
Confidence 344442 46788888888874 2677666 67789999872
Q ss_pred CCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCC
Q 018322 138 SDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVS 217 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~ 217 (358)
......++.+|-.-|..+.|++.-| .+.++|+|.+|+||+..+
T Consensus 82 ----------------~rrclftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqs-------------------- 124 (1202)
T KOG0292|consen 82 ----------------TRRCLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQS-------------------- 124 (1202)
T ss_pred ----------------cceehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccC--------------------
Confidence 5566688999999999999999996 788999999999999998
Q ss_pred CCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCC-------------------------cccCCCcc
Q 018322 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT-------------------------WNVDPNPF 272 (358)
Q Consensus 218 ~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~-------------------------~~~~~~~~ 272 (358)
.+++..+.||..-|.|..|+|... +++|+|-|.+|++||+..-.+ -.+....+
T Consensus 125 -r~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 125 -RKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred -CceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 789999999999999999999998 999999999999999853111 01112345
Q ss_pred ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 273 IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 273 ~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.||...|+-++|+|+-+ +|+||++|..|++|.+...+ .-+-+..+|...|.++-|+|.. .+|+|.|.|++|+|||+.
T Consensus 203 EGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q-~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQ-DLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred cccccccceEEecCCcc-eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCcc-ceeEecCCCccEEEEecc
Confidence 68999999999999999 99999999999999887532 2344568999999999999999 899999999999999997
Q ss_pred CCC
Q 018322 352 LLK 354 (358)
Q Consensus 352 ~~~ 354 (358)
+.+
T Consensus 281 kRt 283 (1202)
T KOG0292|consen 281 KRT 283 (1202)
T ss_pred ccc
Confidence 643
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=181.88 Aligned_cols=211 Identities=16% Similarity=0.191 Sum_probs=150.4
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+.++++|.|+. ..+|+.|. .++.|.||++..-. ..
T Consensus 74 ~~~V~~lafsP~~----------~~lLASgS-----~DgtIrIWDi~t~~----------------------------~~ 110 (568)
T PTZ00420 74 TSSILDLQFNPCF----------SEILASGS-----EDLTIRVWEIPHND----------------------------ES 110 (568)
T ss_pred CCCEEEEEEcCCC----------CCEEEEEe-----CCCeEEEEECCCCC----------------------------cc
Confidence 4578899998863 14677776 56699999884100 00
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
.... ..+ ...+.+|.+.|++|+|+|.+..+||+++.|++|+|||+.. ...+..+
T Consensus 111 ~~~i---~~p--~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t---------------------g~~~~~i 164 (568)
T PTZ00420 111 VKEI---KDP--QCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIEN---------------------EKRAFQI 164 (568)
T ss_pred cccc---ccc--eEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCC---------------------CcEEEEE
Confidence 0000 012 2345689999999999999867889999999999999987 3344445
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEE-----EEECCCCCCEEEEEECCC-
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED-----LQWSPTEPDVFASCSVDG- 299 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~-----v~~sp~~~~~las~s~Dg- 299 (358)
. |...|++++|+|++. +|++++.|+.|+|||++++.. . ..+.+|.+.+.. ..|++++. +|++++.++
T Consensus 165 ~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~-i---~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~ 237 (568)
T PTZ00420 165 N-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEI-A---SSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKN 237 (568)
T ss_pred e-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcE-E---EEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCC
Confidence 4 557899999999998 999999999999999987432 2 457788776543 23457777 788877764
Q ss_pred ---cEEEEECCCCCCeeEEEecCC--CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 300 ---HIAIWDTRVGKSALTSFKAHN--ADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 300 ---~I~iwD~r~~~~~~~~~~~h~--~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.|+|||+|....++..+..+. +.+. ..|.++...++++|+.|++|++|+++..
T Consensus 238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~-p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVTMSIDNASAPLI-PHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CccEEEEEECCCCCCceEEEEecCCccceE-EeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 799999997555665553322 2222 2444443389999999999999999754
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=167.34 Aligned_cols=161 Identities=29% Similarity=0.529 Sum_probs=138.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
.....|.+.|+++.|+|++ .++++++.+|.|++||+.. .+++..+..|...+.+++|+
T Consensus 129 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~---------------------~~~~~~~~~~~~~i~~~~~~ 186 (289)
T cd00200 129 TTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRT---------------------GKCVATLTGHTGEVNSVAFS 186 (289)
T ss_pred EEeccCCCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccc---------------------cccceeEecCccccceEEEC
Confidence 3344799999999999987 7888888899999999975 45666777888899999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|++. .|++++.++.|++||++.... ...+..|...+.+++|+|++. ++++++.+|.|++||++.+ .+...+..
T Consensus 187 ~~~~-~l~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~~~-~~~~~~~~ 259 (289)
T cd00200 187 PDGE-KLLSSSSDGTIKLWDLSTGKC----LGTLRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLRTG-ECVQTLSG 259 (289)
T ss_pred CCcC-EEEEecCCCcEEEEECCCCce----ecchhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcCCc-eeEEEccc
Confidence 9997 888888899999999976322 245557888999999999966 8888888999999999974 46677788
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
|...|.+++|+|++ .+|++++.||.|++|+
T Consensus 260 ~~~~i~~~~~~~~~-~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 260 HTNSVTSLAWSPDG-KRLASGSADGTIRIWD 289 (289)
T ss_pred cCCcEEEEEECCCC-CEEEEecCCCeEEecC
Confidence 99999999999998 8999999999999996
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=175.16 Aligned_cols=169 Identities=18% Similarity=0.298 Sum_probs=145.6
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
...+.+|.-.|+.+.++|.. ..+++++.|..|+||.... .........|..+|+.+..
T Consensus 254 l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~---------------------~s~~~~~~~h~~~V~~ls~ 311 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPL---------------------SSEPTSSRPHEEPVTGLSL 311 (506)
T ss_pred hhhccCcceEEEEEEeccch-hheeecCCcceEEeecccc---------------------ccCccccccccccceeeee
Confidence 36778999999999999998 7899999999999999887 2344567789999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
+|.+. ||++++.||+..+.|++++....+ ..-....-.+++.+|||+|- +|++|..||.|+|||+.++ ..+..|.
T Consensus 312 h~tge-YllsAs~d~~w~Fsd~~~g~~lt~--vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~-~~~a~Fp 386 (506)
T KOG0289|consen 312 HPTGE-YLLSASNDGTWAFSDISSGSQLTV--VSDETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQ-TNVAKFP 386 (506)
T ss_pred ccCCc-EEEEecCCceEEEEEccCCcEEEE--EeeccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCc-cccccCC
Confidence 99999 999999999999999988543221 00111223589999999998 9999999999999999985 4777889
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+|.++|..|+|+.+| ++||++++|+.|++||||+.+
T Consensus 387 ght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 387 GHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred CCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhc
Confidence 999999999999999 999999999999999999875
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=183.08 Aligned_cols=160 Identities=22% Similarity=0.433 Sum_probs=137.2
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
|.+.|-+++|.. ..+.+|+.+|.|..+|++.. .....++.+|..+|..|.|++++.
T Consensus 259 h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~--------------------~~~~~~~~~H~qeVCgLkws~d~~- 314 (484)
T KOG0305|consen 259 HASRVGSLAWNS---SVLSSGSRDGKILNHDVRIS--------------------QHVVSTLQGHRQEVCGLKWSPDGN- 314 (484)
T ss_pred cCceeEEEeccC---ceEEEecCCCcEEEEEEecc--------------------hhhhhhhhcccceeeeeEECCCCC-
Confidence 999999999993 68999999999999999882 222224889999999999999998
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE--CCCcEEEEECCCCCC----------
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWDTRVGKS---------- 311 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD~r~~~~---------- 311 (358)
+||+|+.|+.++|||...... ...+..|++.|..++|+|-...+||+|+ .|+.|++||+.++..
T Consensus 315 ~lASGgnDN~~~Iwd~~~~~p----~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQV 390 (484)
T KOG0305|consen 315 QLASGGNDNVVFIWDGLSPEP----KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQV 390 (484)
T ss_pred eeccCCCccceEeccCCCccc----cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCce
Confidence 999999999999999955322 3678899999999999999888999976 599999999976421
Q ss_pred --------------------------------eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 312 --------------------------------ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 312 --------------------------------~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+..+.+|...|..++++|+| ..|++|+.|.++++|++=.
T Consensus 391 csL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg-~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 391 CSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDG-ETIVTGAADETLRFWNLFD 462 (484)
T ss_pred eeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCC-CEEEEecccCcEEeccccC
Confidence 223457899999999999999 9999999999999998854
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-21 Score=161.94 Aligned_cols=177 Identities=20% Similarity=0.335 Sum_probs=146.7
Q ss_pred eEEEEEecCCCceeEEEEcC-CCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMT-QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p-~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
.+...+.+|.|+|+.+.|.. .-..+||+++.||+|.||.-... .......+..|...|.+
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g-------------------~w~k~~e~~~h~~SVNs 107 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG-------------------RWTKAYEHAAHSASVNS 107 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC-------------------chhhhhhhhhhccccee
Confidence 66788999999999999964 33389999999999999998773 24556677889999999
Q ss_pred EEeCCCCCC-eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC-------------CEEEEEECCCc
Q 018322 235 IDWNPITTG-RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-------------DVFASCSVDGH 300 (358)
Q Consensus 235 l~~s~~~~~-~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-------------~~las~s~Dg~ 300 (358)
++|.|.+.| .|++|+.||.|.|.+++..+.+.. .+....|.-.|++++|.|... ..|++|+.|..
T Consensus 108 V~wapheygl~LacasSDG~vsvl~~~~~g~w~t-~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~ 186 (299)
T KOG1332|consen 108 VAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT-SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL 186 (299)
T ss_pred ecccccccceEEEEeeCCCcEEEEEEcCCCCccc-hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccc
Confidence 999999766 678889999999999988655543 355678999999999999721 25999999999
Q ss_pred EEEEECCCCCCee-EEEecCCCCeEEEEEeCCC---CcEEEEEeCCCCEEEEeCCC
Q 018322 301 IAIWDTRVGKSAL-TSFKAHNADVNVISWNRLA---SCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 301 I~iwD~r~~~~~~-~~~~~h~~~V~~i~~~p~~---~~~lasgs~Dg~i~iwDlr~ 352 (358)
|+||+.....-.+ .++.+|...|+.++|.|.. ...||+||.||+|.||-.+.
T Consensus 187 VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 187 VKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred eeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 9999998753322 3478999999999999964 35799999999999998763
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=173.88 Aligned_cols=204 Identities=19% Similarity=0.220 Sum_probs=165.4
Q ss_pred ccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEec
Q 018322 84 NEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVA 163 (358)
Q Consensus 84 ~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (358)
..+|...|+++|| ....|++|.|+ ...+...+-+
T Consensus 88 ~s~n~G~~l~ag~-----i~g~lYlWels-----------------------------------------sG~LL~v~~a 121 (476)
T KOG0646|consen 88 ASSNLGYFLLAGT-----ISGNLYLWELS-----------------------------------------SGILLNVLSA 121 (476)
T ss_pred ecCCCceEEEeec-----ccCcEEEEEec-----------------------------------------cccHHHHHHh
Confidence 4567778999998 45699999994 4455556678
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC-C
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT-T 242 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~-~ 242 (358)
|...|+|++|+-++ .+|+|||.||.|++|.+........+. ...|+..|..|+-+|+.+...+.+ .
T Consensus 122 HYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~------------~~~p~~~f~~HtlsITDl~ig~Gg~~ 188 (476)
T KOG0646|consen 122 HYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDH------------SVKPLHIFSDHTLSITDLQIGSGGTN 188 (476)
T ss_pred hccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCC------------CccceeeeccCcceeEEEEecCCCcc
Confidence 99999999999999 799999999999999997744433322 358899999999999999988763 3
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC------------
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK------------ 310 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~------------ 310 (358)
.+|+|+|.|.+|++||+..+ ... ..+ .....+.++..+|.+. .+..|+.+|.|.+.++....
T Consensus 189 ~rl~TaS~D~t~k~wdlS~g-~LL---lti-~fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~ 262 (476)
T KOG0646|consen 189 ARLYTASEDRTIKLWDLSLG-VLL---LTI-TFPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH 262 (476)
T ss_pred ceEEEecCCceEEEEEeccc-eee---EEE-ecCCcceeEEEccccc-EEEecCCcceEEeeehhcCCcccccccccccc
Confidence 39999999999999999763 322 111 2356899999999998 99999999999999875422
Q ss_pred ---CeeEEEecCCC--CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 311 ---SALTSFKAHNA--DVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 311 ---~~~~~~~~h~~--~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
..+..+.+|.. .|+|++.+-+| .+|++|+.||.|+|||+.+.
T Consensus 263 ~~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 263 EENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchH
Confidence 13445677877 99999999999 99999999999999998754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-22 Score=174.47 Aligned_cols=173 Identities=20% Similarity=0.249 Sum_probs=147.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
...++....+.|.+|+|++ .++++|+.||.|-+|++.+.....+- ..+..-.|--+...|.|++|+
T Consensus 207 ~IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDL-------------kYQAqd~fMMmd~aVlci~FS 272 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDL-------------KYQAQDNFMMMDDAVLCISFS 272 (508)
T ss_pred heecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhh-------------hhhhhcceeecccceEEEeec
Confidence 4566778889999999999 89999999999999999873211100 122333455577899999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccc-cCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
.+.. .||+|+.||.|++|.+.++ .+. +.|. .|+..|++++|+.++. .+++++.|.++||.-+.++ +++..++
T Consensus 273 RDsE-MlAsGsqDGkIKvWri~tG-~Cl---RrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSG-K~LKEfr 345 (508)
T KOG0275|consen 273 RDSE-MLASGSQDGKIKVWRIETG-QCL---RRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSG-KCLKEFR 345 (508)
T ss_pred ccHH-HhhccCcCCcEEEEEEecc-hHH---HHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccc-hhHHHhc
Confidence 9998 9999999999999999984 433 5565 7999999999999998 8999999999999999996 5888999
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+|.+-||...|.++| ..+++++.||+|++|+..+.
T Consensus 346 GHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~Ktt 380 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTT 380 (508)
T ss_pred CccccccceEEcCCC-CeEEEecCCccEEEecCcch
Confidence 999999999999999 99999999999999998764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=166.62 Aligned_cols=183 Identities=14% Similarity=0.236 Sum_probs=143.9
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCC-CCcEEEcCCCCCeEEEEe
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ-SPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~l~~ 237 (358)
..+..|.+++.+.+|+|+| .++|||+.|..|+|+|+...+......... ....... -.+.++..|..+|.+|+|
T Consensus 106 ~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~----~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMI----SGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred EEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhc----cCCcccCCceEeehhhccCcccceee
Confidence 4566799999999999999 899999999999999998643332111110 0011122 345678899999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF- 316 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~- 316 (358)
+|... .|++|+.|++|++||+....... .........+|.+|+|+|.|. +++.|....++++||+.+- ++....
T Consensus 181 HPre~-ILiS~srD~tvKlFDfsK~saKr--A~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~-Qcfvsan 255 (430)
T KOG0640|consen 181 HPRET-ILISGSRDNTVKLFDFSKTSAKR--AFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTY-QCFVSAN 255 (430)
T ss_pred cchhh-eEEeccCCCeEEEEecccHHHHH--HHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccce-eEeeecC
Confidence 99998 99999999999999996532211 122233467899999999999 8999999999999999984 444433
Q ss_pred --ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 317 --KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 317 --~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
..|...|+++.+++.+ .+.+||+.||.|+|||--+
T Consensus 256 Pd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS 292 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVS 292 (430)
T ss_pred cccccccceeEEEecCCc-cEEEEeccCCcEEeecccc
Confidence 5789999999999999 9999999999999999643
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-23 Score=192.82 Aligned_cols=171 Identities=24% Similarity=0.435 Sum_probs=155.4
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
+|.-...+.+|.++|.+++|.+.. .+|++|+.+|+|++||+.. .+.+.++.||...+.
T Consensus 59 kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDlee---------------------Ak~vrtLtgh~~~~~ 116 (825)
T KOG0267|consen 59 KPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEE---------------------AKIVRTLTGHLLNIT 116 (825)
T ss_pred CCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhh---------------------hhhhhhhhccccCcc
Confidence 555556688999999999999988 7999999999999999987 567778999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
.|+|+|.+. ++|+|+.|+.+++||++..+. ...+.+|...|..+.|+|+|+ ++++++.|.+++|||.+.+ ..+
T Consensus 117 sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc----~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~ag-k~~ 189 (825)
T KOG0267|consen 117 SVDFHPYGE-FFASGSTDTDLKIWDIRKKGC----SHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAG-KLS 189 (825)
T ss_pred eeeeccceE-EeccccccccceehhhhccCc----eeeecCCcceeEEEeecCCCc-eeeccCCcceeeeeccccc-ccc
Confidence 999999998 999999999999999986454 367888999999999999999 9999999999999999985 577
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..|..|...|.++.|+|.. .++++||.|++|++||++++.
T Consensus 190 ~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 190 KEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred cccccccccccccccCchh-hhhccCCCCceeeeeccceeE
Confidence 7889999999999999999 999999999999999999653
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-21 Score=162.46 Aligned_cols=170 Identities=23% Similarity=0.373 Sum_probs=142.4
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
..+|.-.|..+.|-|....+|.+++-|.++++||.++ .+....| ...+.||+-+|+|-
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT---------------------lQ~a~~F-~me~~VYshamSp~ 154 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT---------------------LQEAVDF-KMEGKVYSHAMSPM 154 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeeccc---------------------ceeeEEe-ecCceeehhhcChh
Confidence 3458899999999998888999999999999999988 3333444 23568899999986
Q ss_pred CC--CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE---
Q 018322 241 TT--GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--- 315 (358)
Q Consensus 241 ~~--~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~--- 315 (358)
.. .++|+|..+-.|+|.|+.+ +... ..+.||.+.|.+|.|+|....+||+|+.||.||+||+|....+...
T Consensus 155 a~sHcLiA~gtr~~~VrLCDi~S-Gs~s---H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~ 230 (397)
T KOG4283|consen 155 AMSHCLIAAGTRDVQVRLCDIAS-GSFS---HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQ 230 (397)
T ss_pred hhcceEEEEecCCCcEEEEeccC-Ccce---eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeec
Confidence 53 2788899999999999988 4443 7899999999999999999999999999999999999974333332
Q ss_pred -----------EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 316 -----------FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 316 -----------~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
-.+|.+.|+.++|..++ .++++++.|..+++|+..+++..+
T Consensus 231 hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 231 HNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred ccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCcccc
Confidence 34677889999999999 999999999999999999887654
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=181.52 Aligned_cols=172 Identities=22% Similarity=0.321 Sum_probs=146.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe-
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW- 237 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~- 237 (358)
.++..|...||.|..+..+ ..|+++|.|.+|++|+..... .-+..++..|.+-|.||+.
T Consensus 67 asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~-------------------~~c~stir~H~DYVkcla~~ 126 (735)
T KOG0308|consen 67 ASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN-------------------TFCMSTIRTHKDYVKCLAYI 126 (735)
T ss_pred hhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc-------------------chhHhhhhcccchheeeeec
Confidence 5677899999999999988 689999999999999998731 2456678899999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCC------cccCCCccc-cCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDAT------WNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~------~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
.+... ++|||+-|+.|+|||++++.. -.+....+. |+..+|++++.++++. +|++|+..+.|++||.|+.
T Consensus 127 ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~- 203 (735)
T KOG0308|consen 127 AKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTC- 203 (735)
T ss_pred ccCce-eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcccceEEeccccc-
Confidence 66665 999999999999999987422 011112233 8899999999999997 9999999999999999995
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+..+++|...|.++..+++| ..++|+|.||+|++|||+..+
T Consensus 204 ~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQr 246 (735)
T KOG0308|consen 204 KKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQR 246 (735)
T ss_pred cceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccc
Confidence 4666788999999999999999 999999999999999998754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=177.19 Aligned_cols=160 Identities=24% Similarity=0.384 Sum_probs=143.0
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC-CCCCeEEEEeCCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNPITTG 243 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~ 243 (358)
...|+++.|++.| .+||+|..+|.|.|||... .+.+..+.+ |...|-+|+|+. .
T Consensus 217 ~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~---------------------~k~~~~~~~~h~~rvg~laW~~---~ 271 (484)
T KOG0305|consen 217 EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKE---------------------QKKTRTLRGSHASRVGSLAWNS---S 271 (484)
T ss_pred CCceEEEEECCCC-CEEEEeecCCeEEEEehhh---------------------ccccccccCCcCceeEEEeccC---c
Confidence 8999999999999 7999999999999999987 355556667 999999999993 3
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.+.+|+.++.|..+|++...... ..+.+|...|..++|++++. .||+|+.|+.+.|||.+. ..+...+..|.++|
T Consensus 272 ~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~-~~p~~~~~~H~aAV 346 (484)
T KOG0305|consen 272 VLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLS-PEPKFTFTEHTAAV 346 (484)
T ss_pred eEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCC-ccccEEEeccceee
Confidence 89999999999999999865543 35888999999999999999 999999999999999976 46888999999999
Q ss_pred EEEEEeCCCCcEEEEEe--CCCCEEEEeCCCCC
Q 018322 324 NVISWNRLASCLLASGS--DDGTFSIHDLRLLK 354 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs--~Dg~i~iwDlr~~~ 354 (358)
.+++|+|....+||+|+ .|++|++||..++.
T Consensus 347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred eEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 99999999889999986 59999999998765
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=160.80 Aligned_cols=169 Identities=18% Similarity=0.223 Sum_probs=132.5
Q ss_pred EEEecCCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 159 LRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
-.+..|.|.|+++.|.+.. ...|.+|++||.|.+|+... ...+..+++|...|+.|+.
T Consensus 77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---------------------W~~~~slK~H~~~Vt~lsi 135 (362)
T KOG0294|consen 77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---------------------WELLKSLKAHKGQVTDLSI 135 (362)
T ss_pred cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC---------------------eEEeeeecccccccceeEe
Confidence 4456799999999998754 23688999999999999987 6788899999999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCccc-CCCc------cc----------------------------cCCCcEEEE
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNV-DPNP------FI----------------------------GHSASVEDL 282 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~-~~~~------~~----------------------------~h~~~V~~v 282 (358)
+|.+. +.++.+.|+.+++|++-.+....+ .+.. +. .....+.++
T Consensus 136 HPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~ 214 (362)
T KOG0294|consen 136 HPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCA 214 (362)
T ss_pred cCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceee
Confidence 99998 888999999999999976432110 0000 00 001123344
Q ss_pred EECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEE--eCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 283 QWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW--NRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 283 ~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~--~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.|-.. ..+++|+.++.|++||..+ ..+...+.+|...|-.+.+ +|.+ .+|+|+|.||.|+|||++.-
T Consensus 215 ~~l~~--~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 215 TFLDG--SELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEH-EYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eecCC--ceEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCc-eEEEEeccCceEEEEEcccc
Confidence 44332 3799999999999999998 4688889999999999985 5566 89999999999999999876
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-20 Score=168.26 Aligned_cols=171 Identities=18% Similarity=0.303 Sum_probs=140.5
Q ss_pred CCCeE-EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc---CC
Q 018322 153 GTPIL-QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG---GH 228 (358)
Q Consensus 153 ~~~~~-~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h 228 (358)
++|+. ......|..-|+|+||+|+| .+|||.+.||+|.|||=.. +..+..+. +|
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGkt---------------------ge~vg~l~~~~aH 234 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKT---------------------GEKVGELEDSDAH 234 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCC---------------------ccEEEEecCCCCc
Confidence 35544 35667799999999999999 7999999999999999876 45566666 89
Q ss_pred CCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcccc-CC--CcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 229 KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HS--ASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 229 ~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~--~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
++.|++|+|+|++. +|+|++.|.+++|||+.+. ... +++.. .+ ..-..+-|- .. .|++.+.+|+|.+++
T Consensus 235 kGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~-slv---~t~~~~~~v~dqqvG~lWq--kd-~lItVSl~G~in~ln 306 (603)
T KOG0318|consen 235 KGSIFALSWSPDST-QFLTVSADKTIKIWDVSTN-SLV---STWPMGSTVEDQQVGCLWQ--KD-HLITVSLSGTINYLN 306 (603)
T ss_pred cccEEEEEECCCCc-eEEEecCCceEEEEEeecc-ceE---EEeecCCchhceEEEEEEe--CC-eEEEEEcCcEEEEec
Confidence 99999999999998 9999999999999999874 222 22221 11 222334464 33 799999999999999
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
...+. +...+.+|...|+++..+|++ .+|+||+.||.|.-||+.++..
T Consensus 307 ~~d~~-~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 307 PSDPS-VLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred ccCCC-hhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccc
Confidence 98865 888899999999999999999 9999999999999999987653
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=187.09 Aligned_cols=162 Identities=22% Similarity=0.349 Sum_probs=147.0
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-...|..++|+|..| .+.++-..|.|++||.+. ...+..|..|.++|.+++|+|.++
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM---------------------~tli~rFdeHdGpVRgv~FH~~qp- 64 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRM---------------------GTLIDRFDEHDGPVRGVDFHPTQP- 64 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhh---------------------hhHHhhhhccCCccceeeecCCCC-
Confidence 356788999999997 666778899999999987 577788999999999999999999
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
+|+||+.|..|++|+..+ .++ ..++.||-..|..+.|++..+ .++|+|+|.+||||+..+ +.++..+.+|+.-|
T Consensus 65 lFVSGGDDykIkVWnYk~-rrc---lftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqs-r~~iavltGHnHYV 138 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKT-RRC---LFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQS-RKCIAVLTGHNHYV 138 (1202)
T ss_pred eEEecCCccEEEEEeccc-cee---hhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccC-CceEEEEecCceEE
Confidence 999999999999999977 333 378899999999999999999 999999999999999998 46999999999999
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.|.+|+|.. .+++|+|-|.+|+|||+.-++.
T Consensus 139 McAqFhptE-DlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 139 MCAQFHPTE-DLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred EeeccCCcc-ceEEEecccceEEEEeecchhc
Confidence 999999988 8999999999999999976654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=161.45 Aligned_cols=215 Identities=21% Similarity=0.323 Sum_probs=160.2
Q ss_pred EEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCcee
Q 018322 90 AYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVN 169 (358)
Q Consensus 90 ~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~ 169 (358)
..|++||+..+. +|+|+++++. ++ ...++...+..|.|+|+
T Consensus 27 icFlvgTnslK~-dNqVhll~~d-------------------------------~e-------~s~l~skvf~h~agEvw 67 (370)
T KOG1007|consen 27 ICFLVGTNSLKE-DNQVHLLRLD-------------------------------SE-------GSELLSKVFFHHAGEVW 67 (370)
T ss_pred eEEEEeccccCC-cceeEEEEec-------------------------------Cc-------cchhhhhhhhcCCccee
Confidence 789999999985 5999999983 00 12334455667889999
Q ss_pred EEEEcCCCCcEEEEEeCC-------CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeEEEEeCCCC
Q 018322 170 RIRAMTQNPHICASWADT-------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPIT 241 (358)
Q Consensus 170 ~i~~~p~~~~~lat~s~d-------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~ 241 (358)
.|+.+|..+.+|+|+..+ ..+.||.+......... .+...+..+. .+-+.+.|+.|.|++
T Consensus 68 ~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~------------~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 68 DLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS------------STLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc------------chhhHhhcCCHHHhCceeeEEEcCCC
Confidence 999999999999998763 24679999875443111 1233444444 345589999999988
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCccc--CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-ec
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNV--DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KA 318 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~ 318 (358)
. .|++-. +..|.+|++.++..... ....-.++....++-+|+|.+..-.+....|++++.||+|+.. +...+ .+
T Consensus 136 ~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~-~~~sI~dA 212 (370)
T KOG1007|consen 136 D-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMK-KNNSIEDA 212 (370)
T ss_pred C-eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchh-hhcchhhh
Confidence 7 888777 88999999987554221 1122234677889999999543334445568999999999854 44444 88
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRLV 358 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l~ 358 (358)
|...|..+.|||+-.++|+||++||.|+|||.|+.+.|+.
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 9999999999999989999999999999999999998863
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=172.33 Aligned_cols=234 Identities=19% Similarity=0.314 Sum_probs=188.0
Q ss_pred CCCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCC
Q 018322 45 EEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPN 124 (358)
Q Consensus 45 ~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~ 124 (358)
+.|.-+-+.-..-..+|+|+..=|+-+++|-|++ .+|++|. .|-|.||+..+- ..
T Consensus 75 E~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng-----------~~fav~~------gn~lqiw~~P~~---~~----- 129 (893)
T KOG0291|consen 75 ERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNG-----------KFFAVGC------GNLLQIWHAPGE---IK----- 129 (893)
T ss_pred CCCcEEEEecccceeeEEEeecCccceEEECCCC-----------cEEEEEe------cceeEEEecCcc---hh-----
Confidence 4555577777778899999999999999999996 3666665 468889987421 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeE-EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 018322 125 KPSNDDEDVDSESSDSDEDSDDDEEGGSGTPIL-QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALA 203 (358)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~ 203 (358)
++ -.|+. ..+..+|...|.+|.|+.+. ++|++|+.|-+++||.+....
T Consensus 130 ----------------------~~----~~pFvl~r~~~g~fddi~si~Ws~DS-r~l~~gsrD~s~rl~~v~~~k---- 178 (893)
T KOG0291|consen 130 ----------------------NE----FNPFVLHRTYLGHFDDITSIDWSDDS-RLLVTGSRDLSARLFGVDGNK---- 178 (893)
T ss_pred ----------------------cc----cCcceEeeeecCCccceeEEEeccCC-ceEEeccccceEEEEEecccc----
Confidence 01 14544 46778899999999999998 899999999999999998731
Q ss_pred cccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCC---------------------
Q 018322 204 ESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASD--------------------- 262 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~--------------------- 262 (358)
.-....+.+|++.|.+.-|..+.. .|.+.+.||.|++|.....
T Consensus 179 ---------------~~~~~~l~gHkd~VvacfF~~~~~-~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~ 242 (893)
T KOG0291|consen 179 ---------------NLFTYALNGHKDYVVACFFGANSL-DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDE 242 (893)
T ss_pred ---------------ccceEeccCCCcceEEEEeccCcc-eEEEEecCceEEEEEecCCCcccccccccccccccccccc
Confidence 223456789999998888888877 8999999999999987610
Q ss_pred ---C-----Cccc-------------------------------------------------------------------
Q 018322 263 ---A-----TWNV------------------------------------------------------------------- 267 (358)
Q Consensus 263 ---~-----~~~~------------------------------------------------------------------- 267 (358)
. .|..
T Consensus 243 ~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWi 322 (893)
T KOG0291|consen 243 DGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWI 322 (893)
T ss_pred cchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEE
Confidence 0 0000
Q ss_pred -------------------CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEE
Q 018322 268 -------------------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISW 328 (358)
Q Consensus 268 -------------------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~ 328 (358)
.....++|...+++++++|+|+ ++|+|+.||.|+|||.+++ -|..++..|.+.|+.++|
T Consensus 323 A~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sg-fC~vTFteHts~Vt~v~f 400 (893)
T KOG0291|consen 323 AFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSG-FCFVTFTEHTSGVTAVQF 400 (893)
T ss_pred EEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCc-eEEEEeccCCCceEEEEE
Confidence 0011127899999999999999 9999999999999999985 599999999999999999
Q ss_pred eCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 329 NRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 329 ~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+..+ +.|++.+.||+|+.||+...
T Consensus 401 ~~~g-~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 401 TARG-NVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred EecC-CEEEEeecCCeEEeeeeccc
Confidence 9999 99999999999999999654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-21 Score=174.38 Aligned_cols=166 Identities=22% Similarity=0.341 Sum_probs=143.6
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.....|.++.|..+| .++|+|...|.|+|||+.. ...+..+.+|+.++..+.|+|.+.
T Consensus 66 rFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~---------------------r~iLR~~~ah~apv~~~~f~~~d~ 123 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKS---------------------RVILRQLYAHQAPVHVTKFSPQDN 123 (487)
T ss_pred hhccceeEEEeecCC-eEEEccCCcCcEEEecccc---------------------HHHHHHHhhccCceeEEEecccCC
Confidence 457889999999999 8999999999999999654 345667889999999999999988
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
..|++|+.|+.+++||+.+.- . ...+.+|+..|.+.+|+|...++++|||.||.||+||+|+....+..+ .|+.+
T Consensus 124 t~l~s~sDd~v~k~~d~s~a~--v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~p 198 (487)
T KOG0310|consen 124 TMLVSGSDDKVVKYWDLSTAY--V--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCP 198 (487)
T ss_pred eEEEecCCCceEEEEEcCCcE--E--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCc
Confidence 789999999999999997633 2 356889999999999999998899999999999999999964455555 59999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
|.++.+-|.| .+|||++. ..|+|||+.++.+.+
T Consensus 199 Ve~vl~lpsg-s~iasAgG-n~vkVWDl~~G~qll 231 (487)
T KOG0310|consen 199 VESVLALPSG-SLIASAGG-NSVKVWDLTTGGQLL 231 (487)
T ss_pred eeeEEEcCCC-CEEEEcCC-CeEEEEEecCCceeh
Confidence 9999999999 89998875 589999999776543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-21 Score=172.96 Aligned_cols=169 Identities=20% Similarity=0.316 Sum_probs=138.7
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.+..+..+|..+|..++|++.+ ..|.|+|.|+.|++||+.+ ++.+..|.. ...++|+
T Consensus 249 ~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtET---------------------G~~~~~f~~-~~~~~cv 305 (503)
T KOG0282|consen 249 RCLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTET---------------------GQVLSRFHL-DKVPTCV 305 (503)
T ss_pred ceehhhhcchhhhhhhhccccC-Ceeeeeecceeeeeecccc---------------------ceEEEEEec-CCCceee
Confidence 4557788999999999999999 7888999999999999988 566666643 2378899
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCC---------------------------------------------------
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDAT--------------------------------------------------- 264 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~--------------------------------------------------- 264 (358)
.|+|++.+.|++|+.|+.|+.||++++..
T Consensus 306 kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~ 385 (503)
T KOG0282|consen 306 KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEM 385 (503)
T ss_pred ecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhh
Confidence 99999977999999999999999998520
Q ss_pred -------------cc--------------------cCCCccccCC--CcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 265 -------------WN--------------------VDPNPFIGHS--ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 265 -------------~~--------------------~~~~~~~~h~--~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
+. .....|.||. +.-..+.|||+|. +|++|..||.+.+||.++.
T Consensus 386 hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 386 HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred ccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeechhh
Confidence 00 0001122443 2334578999999 9999999999999999984
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
..+..+.+|...+..+.|+|..+..+|||+-||.|++||
T Consensus 465 -kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 -KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 577788999999999999999989999999999999996
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-20 Score=174.52 Aligned_cols=230 Identities=18% Similarity=0.300 Sum_probs=182.3
Q ss_pred CCCceeeeChhHHHhhhcccc-cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCC
Q 018322 45 EEGEELQCDPTAYNSLHAFHI-GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVP 123 (358)
Q Consensus 45 ~~~~~l~~~~~~Y~~~~~~~~-~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~ 123 (358)
+.||-+.||-..-+.+-+... +-.--+++..||+ .++|+|+ .++.+.+|++.-+..
T Consensus 432 k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-----------~g~vT~s-----aDktVkfWdf~l~~~------- 488 (888)
T KOG0306|consen 432 KNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-----------KGFVTGS-----ADKTVKFWDFKLVVS------- 488 (888)
T ss_pred cCCceEEEEeehhhhhhhhhccccceeeeeecCCC-----------CceEEec-----CCcEEEEEeEEEEec-------
Confidence 456666666444444444332 2233367778886 4678887 677999998853211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeE---EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc
Q 018322 124 NKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPIL---QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN 200 (358)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~ 200 (358)
+ .+.....+ +.+...-+..|.|++++|++ .+||.+--|.+|+||-+..
T Consensus 489 ------------------------~-~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDt--- 539 (888)
T KOG0306|consen 489 ------------------------V-PGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDT--- 539 (888)
T ss_pred ------------------------c-CcccceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEecc---
Confidence 0 00112222 23455567999999999999 8999999999999999987
Q ss_pred ccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEE
Q 018322 201 ALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVE 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~ 280 (358)
.+....+.||.-+|.|++.+|++. +++|||.|.+|++|-+.- |.+. +.+.+|..+|.
T Consensus 540 ------------------lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdF-GDCH---KS~fAHdDSvm 596 (888)
T KOG0306|consen 540 ------------------LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDF-GDCH---KSFFAHDDSVM 596 (888)
T ss_pred ------------------eeeeeeecccccceeEEeccCCcC-eEEeccCCCceEEecccc-chhh---hhhhcccCcee
Confidence 566678899999999999999998 999999999999999865 4444 67889999999
Q ss_pred EEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 281 DLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 281 ~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+|+|.|... +|.+||.|+.|+-||-.. ...++.+.+|...|+|++..|+| .+++|+|.|.+|++|....
T Consensus 597 ~V~F~P~~~-~FFt~gKD~kvKqWDg~k-Fe~iq~L~~H~~ev~cLav~~~G-~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 597 SVQFLPKTH-LFFTCGKDGKVKQWDGEK-FEEIQKLDGHHSEVWCLAVSPNG-SFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEEEcccce-eEEEecCcceEEeechhh-hhhheeeccchheeeeeEEcCCC-CeEEeccCCceeEeeeccC
Confidence 999999776 999999999999999876 45888999999999999999999 9999999999999997643
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=158.78 Aligned_cols=170 Identities=21% Similarity=0.343 Sum_probs=147.8
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.+.+|..+++.|+|+..| .+|.+++.|.++.+|--.+ +..+.++.||++.|+|++..-
T Consensus 5 ~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~n---------------------GerlGty~GHtGavW~~Did~ 62 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLN---------------------GERLGTYDGHTGAVWCCDIDW 62 (327)
T ss_pred ccccCccccceEEecCCC-cEEEEecCCCCceEEEecC---------------------CceeeeecCCCceEEEEEecC
Confidence 467899999999999999 7999999999999998765 577889999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCccc-------------------------------------------------CCC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNV-------------------------------------------------DPN 270 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~-------------------------------------------------~~~ 270 (358)
+.. +|++|+.|.+++|||+.++..... +..
T Consensus 63 ~s~-~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 63 DSK-HLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred Ccc-eeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 888 999999999999999988531100 011
Q ss_pred ccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 271 PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 271 ~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.+..+.+.++.+-|.|.+. .|++|..||.|.+||++++...+.+...|...|+.|+++|+. .+++|||.|.+-++||.
T Consensus 142 kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDV 219 (327)
T ss_pred EecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-ceEEecccCccceeeec
Confidence 1224557788899999999 999999999999999999877777778899999999999999 99999999999999999
Q ss_pred CCCC
Q 018322 351 RLLK 354 (358)
Q Consensus 351 r~~~ 354 (358)
+++.
T Consensus 220 ~tl~ 223 (327)
T KOG0643|consen 220 RTLE 223 (327)
T ss_pred ccee
Confidence 9875
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=157.62 Aligned_cols=210 Identities=20% Similarity=0.301 Sum_probs=160.6
Q ss_pred HhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCC
Q 018322 58 NSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSES 137 (358)
Q Consensus 58 ~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (358)
+-||++...--.-++.|-.| +.||+.|.|-- -|.|+++. +++.
T Consensus 92 delhsf~hkhivk~~af~~d-----------s~~lltgg~ek-----llrvfdln---~p~A------------------ 134 (334)
T KOG0278|consen 92 DELHSFEHKHIVKAVAFSQD-----------SNYLLTGGQEK-----LLRVFDLN---RPKA------------------ 134 (334)
T ss_pred hhhhhhhhhheeeeEEeccc-----------chhhhccchHH-----Hhhhhhcc---CCCC------------------
Confidence 56788888888888888877 36889888532 44555442 2111
Q ss_pred CCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCC
Q 018322 138 SDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVS 217 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~ 217 (358)
+| ...-+|++.|..+.|+... +.|.+.++|++||+||..+
T Consensus 135 ----------------pp---~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rT-------------------- 174 (334)
T KOG0278|consen 135 ----------------PP---KEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRT-------------------- 174 (334)
T ss_pred ----------------Cc---hhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEecc--------------------
Confidence 11 2244899999999999988 5666779999999999988
Q ss_pred CCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 218 ~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
...+.++. ...+|.++..+++|. + ++-...+.|.+||..+.+.. +.+. -...|++.+++|... +|++|+.
T Consensus 175 -gt~v~sL~-~~s~VtSlEvs~dG~-i-lTia~gssV~Fwdaksf~~l----Ks~k-~P~nV~SASL~P~k~-~fVaGge 244 (334)
T KOG0278|consen 175 -GTEVQSLE-FNSPVTSLEVSQDGR-I-LTIAYGSSVKFWDAKSFGLL----KSYK-MPCNVESASLHPKKE-FFVAGGE 244 (334)
T ss_pred -CcEEEEEe-cCCCCcceeeccCCC-E-EEEecCceeEEeccccccce----eecc-CccccccccccCCCc-eEEecCc
Confidence 45555553 345889999999986 4 45555789999999875432 2221 245688999999986 9999999
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
|..++.||..++.......++|.++|.|+.|+|+| .+.|+||.||+|+||.+.-.+.
T Consensus 245 d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 245 DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ceEEEEEeccCCceeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEecCCCc
Confidence 99999999999754333348999999999999999 8999999999999999876654
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=165.85 Aligned_cols=188 Identities=21% Similarity=0.312 Sum_probs=149.1
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccccccc--------CCCCC---------C-----
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVG--------QGAPQ---------V----- 216 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~--------~~~~~---------~----- 216 (358)
...-.|...++-.+|+|.| .++|+|...|+|||||.......++..-.... ....+ .
T Consensus 53 ~iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 53 DIYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 4455799999999999999 79999999999999998763221111100000 00000 0
Q ss_pred ---CCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEE
Q 018322 217 ---SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFA 293 (358)
Q Consensus 217 ---~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~la 293 (358)
..+..+..+.||...+.+++|-|..+-+++||+.|++|.+|+-.- ..-...+..|..-|+|+.|+|+|. .||
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP----FKFk~s~r~HskFV~~VRysPDG~-~Fa 206 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP----FKFKSSFREHSKFVNCVRYSPDGS-RFA 206 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC----eeeeecccccccceeeEEECCCCC-eEE
Confidence 234556677899999999999999998999999999999997432 211356677999999999999998 999
Q ss_pred EEECCCcEEEEECCCCCCeeEEEe---cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 294 SCSVDGHIAIWDTRVGKSALTSFK---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 294 s~s~Dg~I~iwD~r~~~~~~~~~~---~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+.+.||.|.|||-.++ ..+..+. +|.+.|.+|+|+|++ ..|+|++.|.+++|||+.+.+
T Consensus 207 t~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred EecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccc
Confidence 9999999999999986 4566664 899999999999999 999999999999999998753
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=175.41 Aligned_cols=162 Identities=27% Similarity=0.407 Sum_probs=142.5
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
+...+.+|.+.|+++.+.. +..++++|+.|.++++||+.. +.+..++.+|...|.++.
T Consensus 241 i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s---------------------g~C~~~l~gh~stv~~~~ 298 (537)
T KOG0274|consen 241 ILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST---------------------GECTHSLQGHTSSVRCLT 298 (537)
T ss_pred EEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC---------------------CcEEEEecCCCceEEEEE
Confidence 3345999999999999987 447999999999999999876 789999999999999998
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
..+. ++++|+.|.+|++|++.++ ... ..+.+|+.+|+++..+ +. ++++|+.|++|++||++++ +++.++
T Consensus 299 ~~~~---~~~sgs~D~tVkVW~v~n~-~~l---~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~-~cl~sl 367 (537)
T KOG0274|consen 299 IDPF---LLVSGSRDNTVKVWDVTNG-ACL---NLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTG-KCLKSL 367 (537)
T ss_pred ccCc---eEeeccCCceEEEEeccCc-ceE---EEeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhc-eeeeee
Confidence 8663 7889999999999999874 332 5566799999999998 55 9999999999999999974 699999
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.+|...|.++.+... ..+++|+.|++|++||++++
T Consensus 368 ~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 368 SGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred cCCcceEEEEEecCc--ceEEeeeeccceEeecCCch
Confidence 999999999988764 57999999999999999987
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-21 Score=169.81 Aligned_cols=163 Identities=21% Similarity=0.377 Sum_probs=140.5
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
.+++.|...|..++|+. .+++|++.|.+|.+||+..... ......+.||...|..++|+
T Consensus 271 ~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~------------------it~rrVLvGHrAaVNvVdfd 329 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD------------------ITLRRVLVGHRAAVNVVDFD 329 (499)
T ss_pred hHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH------------------HHHHHHHhhhhhheeeeccc
Confidence 46789999999999986 5899999999999999987321 23445678999999999997
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
.. ++++++.|.+|++|++.+ ...+ +++.+|...|.|+++. ++ ++++|+.|.+||+||+..+ .++..+.+
T Consensus 330 ~k---yIVsASgDRTikvW~~st-~efv---Rtl~gHkRGIAClQYr--~r-lvVSGSSDntIRlwdi~~G-~cLRvLeG 398 (499)
T KOG0281|consen 330 DK---YIVSASGDRTIKVWSTST-CEFV---RTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECG-ACLRVLEG 398 (499)
T ss_pred cc---eEEEecCCceEEEEeccc-eeee---hhhhcccccceehhcc--Ce-EEEecCCCceEEEEecccc-HHHHHHhc
Confidence 53 999999999999999987 4443 7889999999999874 66 9999999999999999986 58888899
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
|..-|.||.|+. ..|++|+.||+|+|||+...-.|
T Consensus 399 HEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 399 HEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred hHHhhhheeecC---ceeeeccccceEEEEecccccCC
Confidence 999999999985 67999999999999999876554
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=153.38 Aligned_cols=170 Identities=18% Similarity=0.284 Sum_probs=140.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
....+|.+.|-.+.|.|..+.+||+++.|.+|++||++. .++..........+ -+.|+
T Consensus 58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~---------------------~k~~~~i~~~~eni-~i~ws 115 (313)
T KOG1407|consen 58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS---------------------GKCTARIETKGENI-NITWS 115 (313)
T ss_pred hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc---------------------CcEEEEeeccCcce-EEEEc
Confidence 345589999999999999999999999999999999987 56666655444444 57888
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCC-------------------------------------cccCCCccccCCCcEEE
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDAT-------------------------------------WNVDPNPFIGHSASVED 281 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~-------------------------------------~~~~~~~~~~h~~~V~~ 281 (358)
|.+. +++.|+.|-.|...|.++... ...+...++.|...+.|
T Consensus 116 p~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCic 194 (313)
T KOG1407|consen 116 PDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCIC 194 (313)
T ss_pred CCCC-EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEE
Confidence 8887 888888888888877765310 01123456789999999
Q ss_pred EEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 282 v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|.|+|+|+ +||+|+.|..+.+||+... -|+..+..+.-+|..|+|+.+| ++||+||.|..|-|=++.++.
T Consensus 195 I~f~p~Gr-yfA~GsADAlvSLWD~~EL-iC~R~isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 195 IEFDPDGR-YFATGSADALVSLWDVDEL-ICERCISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred EEECCCCc-eEeeccccceeeccChhHh-hhheeeccccCceEEEEeccCc-ceeeccCccceEEeEecccCC
Confidence 99999999 9999999999999999873 5788888899999999999999 999999999998887777664
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=163.68 Aligned_cols=160 Identities=18% Similarity=0.302 Sum_probs=141.9
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeEEEEeCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPIT 241 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~ 241 (358)
-|..+|.||.|+.+. .++|+|+.||.|++|.+.+ +.++..|. .|+..|+|+.|+.++
T Consensus 261 Mmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~t---------------------G~ClRrFdrAHtkGvt~l~FSrD~ 318 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIET---------------------GQCLRRFDRAHTKGVTCLSFSRDN 318 (508)
T ss_pred ecccceEEEeecccH-HHhhccCcCCcEEEEEEec---------------------chHHHHhhhhhccCeeEEEEccCc
Confidence 478999999999988 7999999999999999987 67887776 799999999999999
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec--C
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA--H 319 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~--h 319 (358)
. .+++++.|.++++.-+.+ ++.. +.|.||++.|+...|.++|. .+++++.||+|++|+..+. .|+.+++. .
T Consensus 319 S-qiLS~sfD~tvRiHGlKS-GK~L---KEfrGHsSyvn~a~ft~dG~-~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~ 391 (508)
T KOG0275|consen 319 S-QILSASFDQTVRIHGLKS-GKCL---KEFRGHSSYVNEATFTDDGH-HIISASSDGTVKVWHGKTT-ECLSTFKPLGT 391 (508)
T ss_pred c-hhhcccccceEEEecccc-chhH---HHhcCccccccceEEcCCCC-eEEEecCCccEEEecCcch-hhhhhccCCCC
Confidence 8 999999999999999987 4443 78999999999999999998 9999999999999999984 57777743 4
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
..+|+++..-|.++..++.|...++|.|.++.
T Consensus 392 d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 392 DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred cccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 55789999988888889999888999998874
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-20 Score=156.70 Aligned_cols=236 Identities=17% Similarity=0.310 Sum_probs=174.7
Q ss_pred hhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCC
Q 018322 60 LHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSD 139 (358)
Q Consensus 60 ~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (358)
+..+...||-.+.+|..-.. ...++++|+.... ..|.|.|+++.
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~--------~~~rla~gS~~Ee-~~Nkvqiv~ld--------------------------- 81 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPD--------KKFRLAVGSFIEE-YNNKVQIVQLD--------------------------- 81 (364)
T ss_pred EEEecCCCceeeeccccCCC--------cceeEEEeeeccc-cCCeeEEEEEc---------------------------
Confidence 45678899999999974311 1379999999875 67999999982
Q ss_pred CCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCC----CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCC
Q 018322 140 SDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQN----PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQ 215 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~ 215 (358)
++. ...+....+.|.-+++.+.|.|+. |.+|||.++ .+|||.+.............
T Consensus 82 ----~~s-------~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L------- 141 (364)
T KOG0290|consen 82 ----EDS-------GELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVL------- 141 (364)
T ss_pred ----cCC-------CceeccCCCCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhh-------
Confidence 000 112223337899999999999976 689998765 79999998632222110000
Q ss_pred CCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEE
Q 018322 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC 295 (358)
Q Consensus 216 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~ 295 (358)
....-..+..++++++|+...++++.+++-|.+..|||+.++.. ......+..|...|.+|+|...+..+||++
T Consensus 142 -----~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASv 215 (364)
T KOG0290|consen 142 -----NNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASV 215 (364)
T ss_pred -----ccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEe
Confidence 00012234569999999999888999999999999999987412 111345778999999999999888899999
Q ss_pred ECCCcEEEEECCCCCCeeEEEec-C-CCCeEEEEEeCCCCcEEEEEeCCC-CEEEEeCCCCCCCC
Q 018322 296 SVDGHIAIWDTRVGKSALTSFKA-H-NADVNVISWNRLASCLLASGSDDG-TFSIHDLRLLKVRL 357 (358)
Q Consensus 296 s~Dg~I~iwD~r~~~~~~~~~~~-h-~~~V~~i~~~p~~~~~lasgs~Dg-~i~iwDlr~~~~~l 357 (358)
+.||+||+||+|........+.. . ..+...++|+++..+++||-..|. .|.|-|+|..-.|+
T Consensus 216 gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 216 GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV 280 (364)
T ss_pred cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce
Confidence 99999999999986544333422 2 467889999999989999977664 79999999887664
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-19 Score=148.10 Aligned_cols=169 Identities=21% Similarity=0.233 Sum_probs=144.8
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
...+..+..+|-.+|..+..+.++ ..||+|+.|..|.+||+.+ ++.+..|.+|.+.|.
T Consensus 48 rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~T---------------------Gkv~Rr~rgH~aqVN 105 (307)
T KOG0316|consen 48 RGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNT---------------------GKVDRRFRGHLAQVN 105 (307)
T ss_pred ccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEccc---------------------Ceeeeecccccceee
Confidence 556777888999999999999888 6899999999999999998 788899999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
++.|+.... .+++|+.|.++++||.++.... +++.+......|.+|..+. +.+++|+.||++|.||+|.+. .
T Consensus 106 tV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~e--PiQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~-l- 177 (307)
T KOG0316|consen 106 TVRFNEESS-VVASGSFDSSVRLWDCRSRSFE--PIQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGT-L- 177 (307)
T ss_pred EEEecCcce-EEEeccccceeEEEEcccCCCC--ccchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecce-e-
Confidence 999999988 9999999999999999875432 2466667788999998863 279999999999999999864 2
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.......+|++++|++++ +.++.++.|++|++.|-.+++
T Consensus 178 -~sDy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 178 -SSDYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGK 216 (307)
T ss_pred -ehhhcCCcceeEEecCCC-CEEEEeeccceeeecccchhH
Confidence 234456789999999999 788888899999999987764
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=155.50 Aligned_cols=121 Identities=21% Similarity=0.428 Sum_probs=100.4
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-...|..|.|+|+...+++.+|-||+||+|++.... ...+ .....|.+++.+++|+.+|.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g------------------~~~~-ka~~~~~~PvL~v~Wsddgs- 85 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG------------------QLVP-KAQQSHDGPVLDVCWSDDGS- 85 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCC------------------cccc-hhhhccCCCeEEEEEccCCc-
Confidence 457899999999766888899999999999998721 0122 33557889999999999997
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC-CEEEEEECCCcEEEEECCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~las~s~Dg~I~iwD~r~~ 309 (358)
.+++|++|+.+++||+.++ + ...+..|.++|..+.|-+... .+|+|||-|++|+.||+|+.
T Consensus 86 kVf~g~~Dk~~k~wDL~S~-Q----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 86 KVFSGGCDKQAKLWDLASG-Q----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred eEEeeccCCceEEEEccCC-C----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence 9999999999999999885 3 256778999999999975432 38999999999999999864
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-19 Score=170.19 Aligned_cols=163 Identities=16% Similarity=0.205 Sum_probs=133.1
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.+.|..|.|+..+ +|.+++.|.+|+||++.. ..++.+| .|.+-|+|++|+
T Consensus 363 ~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~---------------------~~CL~~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGR---------------------KECLKVF-SHNDFVTCVAFN 418 (712)
T ss_pred hhhhccchhheecccccCC--eeEeccccccEEeecCCC---------------------cceeeEE-ecCCeeEEEEec
Confidence 3467999999999999977 899999999999999987 5777777 699999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE--
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-- 316 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-- 316 (358)
|....+|++|+-||.|+||++... + + .....-..-|++++|.|+|+ ..+.|+.+|.+++|+++.. +.....
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~-~-V---v~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~l-k~~~~~~I 491 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDK-K-V---VDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGL-KLVSDFHI 491 (712)
T ss_pred ccCCCcEeecccccceEEeecCcC-e-e---EeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCC-eEEEeeeE
Confidence 998889999999999999999763 2 1 11222347899999999999 9999999999999999873 332222
Q ss_pred ecC------CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 317 KAH------NADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 317 ~~h------~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
..| ...|+.++|.|..+.-|+..+.|..|+|+|+|.
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~ 533 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD 533 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc
Confidence 111 227999999998766566678899999999954
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=154.20 Aligned_cols=166 Identities=19% Similarity=0.304 Sum_probs=147.7
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.+.|.+..|-..+ ..++|++-|.+..+||+.. +.++..+.||..+.+.++-+
T Consensus 266 ~~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwDVEt---------------------ge~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 266 MRLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWDVET---------------------GEVVNILTGHDSELTHCSTH 323 (481)
T ss_pred eeeeccccceEehhhhcCc-ceeeeeeccccceeeeecc---------------------CceeccccCcchhccccccC
Confidence 5678999999999999888 7899999999999999998 68888999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|... ++++++.|.+.+|||++. .... ...|+||+..|+++.|..+.+ +++|++|.+|++||+|....++.++.
T Consensus 324 ptQr-LVvTsSrDtTFRLWDFRe-aI~s--V~VFQGHtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplATIR- 396 (481)
T KOG0300|consen 324 PTQR-LVVTSSRDTTFRLWDFRE-AIQS--VAVFQGHTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLATIR- 396 (481)
T ss_pred Ccce-EEEEeccCceeEeccchh-hcce--eeeecccccceeEEEEecCCc--eeecCCCceEEEeeeccccCcceeee-
Confidence 9988 999999999999999985 2222 467999999999999998775 99999999999999999888888886
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+++|.++.+..+ .+||.-.++..|++||+...+
T Consensus 397 tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 397 TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred cCCccceeEeecCC-ceEEeccCCceEEEEecCCCc
Confidence 45679999999888 899999999999999997543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=159.85 Aligned_cols=229 Identities=15% Similarity=0.260 Sum_probs=174.4
Q ss_pred hHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCC
Q 018322 55 TAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVD 134 (358)
Q Consensus 55 ~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~ 134 (358)
..|+-+-.....|-+.=|..-| .|+++-..++++ +...|+=+ +++.+-+
T Consensus 23 ~CYddIrVs~~tWDS~fcavNP-------------kfiAvi~easgG--gaf~ViPl---~k~Gr~d------------- 71 (472)
T KOG0303|consen 23 QCYDDIRVSRVTWDSSFCAVNP-------------KFVAVIIEASGG--GAFLVIPL---VKTGRMD------------- 71 (472)
T ss_pred hhhcceeeeeeeccccccccCC-------------ceEEEEEecCCC--cceeeccc---ccccccC-------------
Confidence 5788888888889886655544 366666666542 23444433 2222111
Q ss_pred CCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCC
Q 018322 135 SESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAP 214 (358)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~ 214 (358)
. .-|. .-+|+++|..+.|+|.+...||+||+|.+|.||.+........
T Consensus 72 ~-----------------~~P~----v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~----------- 119 (472)
T KOG0303|consen 72 A-----------------SYPL----VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD----------- 119 (472)
T ss_pred C-----------------CCCC----ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-----------
Confidence 0 1232 3489999999999999999999999999999999987432221
Q ss_pred CCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEE
Q 018322 215 QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (358)
Q Consensus 215 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (358)
...|+..+.||...|.-++|+|...+.|+|+++|.+|.+|++.++...+ .+. |...|.+++|+.+|. +|++
T Consensus 120 ---ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali----~l~-hpd~i~S~sfn~dGs-~l~T 190 (472)
T KOG0303|consen 120 ---LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI----TLD-HPDMVYSMSFNRDGS-LLCT 190 (472)
T ss_pred ---cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceee----ecC-CCCeEEEEEeccCCc-eeee
Confidence 2478889999999999999999998899999999999999998854432 233 999999999999998 9999
Q ss_pred EECCCcEEEEECCCCCCeeEEEecCCC-CeEEEEEeCCCCcEEEEEe---CCCCEEEEeCCCCCCCC
Q 018322 295 CSVDGHIAIWDTRVGKSALTSFKAHNA-DVNVISWNRLASCLLASGS---DDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 295 ~s~Dg~I~iwD~r~~~~~~~~~~~h~~-~V~~i~~~p~~~~~lasgs---~Dg~i~iwDlr~~~~~l 357 (358)
.+.|+.|||||.|.+ ..+..-.+|.+ .-..+.|-.++ .++.||- .+.++-+||-.++..|+
T Consensus 191 tckDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~ 255 (472)
T KOG0303|consen 191 TCKDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEPI 255 (472)
T ss_pred ecccceeEEEcCCCC-cEeeecccccCCCcceeEEeccC-ceeeeccccccccceeccCcccccCcc
Confidence 999999999999995 46655567765 34556788888 5555553 47899999999998875
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=152.81 Aligned_cols=185 Identities=16% Similarity=0.281 Sum_probs=145.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc--ccccc-----------ccccc---------------
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN--ALAES-----------ETIVG--------------- 210 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~--~~~~~-----------~~~~~--------------- 210 (358)
-+..+|+|.|+|+...-+. ..++||+.|.+++|||+..... .++.. +....
T Consensus 46 Gty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~ 124 (327)
T KOG0643|consen 46 GTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSV 124 (327)
T ss_pred eeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEE
Confidence 4567999999999999888 7999999999999999987322 11111 10000
Q ss_pred ----CCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC
Q 018322 211 ----QGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP 286 (358)
Q Consensus 211 ----~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 286 (358)
..........|...+..+...++..-|.|.+. .|++|..+|.|..||++++...+ .....|...|++++++|
T Consensus 125 fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~~v---~s~~~h~~~Ind~q~s~ 200 (327)
T KOG0643|consen 125 FDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKELV---DSDEEHSSKINDLQFSR 200 (327)
T ss_pred EEccCChhhhcccCceEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCceee---echhhhccccccccccC
Confidence 00011134567888888889999999999999 99999999999999999854433 45566899999999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCC------------------------------------------------------e
Q 018322 287 TEPDVFASCSVDGHIAIWDTRVGKS------------------------------------------------------A 312 (358)
Q Consensus 287 ~~~~~las~s~Dg~I~iwD~r~~~~------------------------------------------------------~ 312 (358)
+.. +|++++.|.+-++||.++..- .
T Consensus 201 d~T-~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEE 279 (327)
T KOG0643|consen 201 DRT-YFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEE 279 (327)
T ss_pred Ccc-eEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHH
Confidence 998 999999999999999975210 0
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+-.+++|-++||+|+|+|+| ...+||+.||.|++.-.
T Consensus 280 igrvkGHFGPINsvAfhPdG-ksYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 280 IGRVKGHFGPINSVAFHPDG-KSYSSGGEDGYVRLHHF 316 (327)
T ss_pred hccccccccCcceeEECCCC-cccccCCCCceEEEEEe
Confidence 12457888999999999999 99999999999998644
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-19 Score=168.55 Aligned_cols=221 Identities=19% Similarity=0.265 Sum_probs=168.2
Q ss_pred HhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCC
Q 018322 58 NSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSES 137 (358)
Q Consensus 58 ~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (358)
.++-++... -.|..-++|.. .|+|+|+ ..+.|.|+++..
T Consensus 405 kciRTi~~~-y~l~~~Fvpgd-----------~~Iv~G~-----k~Gel~vfdlaS------------------------ 443 (888)
T KOG0306|consen 405 KCIRTITCG-YILASKFVPGD-----------RYIVLGT-----KNGELQVFDLAS------------------------ 443 (888)
T ss_pred ceeEEeccc-cEEEEEecCCC-----------ceEEEec-----cCCceEEEEeeh------------------------
Confidence 344444444 33566666653 6999999 456899999851
Q ss_pred CCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCC
Q 018322 138 SDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVS 217 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~ 217 (358)
...+ -+..+|.|.|+.+...|++ ..++|||.|.+|++||+.--.. . ++... +..
T Consensus 444 ----------------~~l~-Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~-~--~gt~~-----k~l 497 (888)
T KOG0306|consen 444 ----------------ASLV-ETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVS-V--PGTQK-----KVL 497 (888)
T ss_pred ----------------hhhh-hhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEec-c--Ccccc-----eee
Confidence 1112 2233899999999999999 7899999999999999865221 0 00000 000
Q ss_pred CCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 218 ~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
......++ .-...|.|+.+||++. +||++--|.++++|-+.+..- ...+.||.-+|.|+..+|++. +++|||.
T Consensus 498 sl~~~rtL-el~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~DSk-livTgSA 570 (888)
T KOG0306|consen 498 SLKHTRTL-ELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPDSK-LIVTGSA 570 (888)
T ss_pred eeccceEE-eccccEEEEEEcCCCc-EEEEEeccCeEEEEEecceee----eeeecccccceeEEeccCCcC-eEEeccC
Confidence 00111112 2345899999999999 999999999999999977332 246789999999999999999 9999999
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|++|+||-+.-+ .|-.++.+|...|.++.|.|.. +++.|+|.|+.|+-||-.++.
T Consensus 571 DKnVKiWGLdFG-DCHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 571 DKNVKIWGLDFG-DCHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred CCceEEeccccc-hhhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhh
Confidence 999999999885 5778899999999999999987 999999999999999987765
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=167.57 Aligned_cols=176 Identities=24% Similarity=0.363 Sum_probs=147.8
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeEEEEeC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWN 238 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s 238 (358)
.+-.|..-|.|+++......++|+||-|+.|.|||++......-.. + ...+...+. |+...||+|+.+
T Consensus 112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s-----~------n~~t~~sl~sG~k~siYSLA~N 180 (735)
T KOG0308|consen 112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS-----F------NNVTVNSLGSGPKDSIYSLAMN 180 (735)
T ss_pred hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh-----c------cccccccCCCCCccceeeeecC
Confidence 3456999999999944444799999999999999999743211000 0 122333344 899999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
+.+. .|++|+..+.|++||.++..+ ...+.||+..|.++..+++|. .++++|.||+|++||++. +.|+.++..
T Consensus 181 ~t~t-~ivsGgtek~lr~wDprt~~k----imkLrGHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLgq-QrCl~T~~v 253 (735)
T KOG0308|consen 181 QTGT-IIVSGGTEKDLRLWDPRTCKK----IMKLRGHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLGQ-QRCLATYIV 253 (735)
T ss_pred Ccce-EEEecCcccceEEeccccccc----eeeeeccccceEEEEEcCCCC-eEeecCCCceEEeeeccc-cceeeeEEe
Confidence 9997 999999999999999998554 256789999999999999998 999999999999999998 569999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|...|+++..+|.- ..+++|+.||.|..=|||+..
T Consensus 254 H~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 254 HKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred ccCceEEEeeCCCc-ceEEecCCCCcEEecccCCch
Confidence 99999999999988 899999999999999999864
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-20 Score=168.60 Aligned_cols=173 Identities=17% Similarity=0.219 Sum_probs=136.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE-----cCCCCCeE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-----GGHKDEGY 233 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~ 233 (358)
....+|...++|.+|+|.....|.|++.||+++|||+..... .+.++ .+..-+++
T Consensus 262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~--------------------q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS--------------------QLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh--------------------heeEEeeccCCCcccCce
Confidence 345789999999999999988999999999999999988432 12222 12334789
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCC--cEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA--SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
..+|++++. +||+|+.||.|.+|+........ ....-..|.. .|++|.||++|+ +|++-+.|+++++||+|..++
T Consensus 322 sC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p-~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 322 SCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRP-VMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred eeecCCCcc-hhhhcccCCceeeeecCCccccc-ceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeecccccc
Confidence 999999999 99999999999999985532211 1122345766 899999999999 999999999999999999887
Q ss_pred eeEEEecC--CCCeEEEEEeCCCCcEEEEEeC------CCCEEEEeCCCCCC
Q 018322 312 ALTSFKAH--NADVNVISWNRLASCLLASGSD------DGTFSIHDLRLLKV 355 (358)
Q Consensus 312 ~~~~~~~h--~~~V~~i~~~p~~~~~lasgs~------Dg~i~iwDlr~~~~ 355 (358)
++....+- .-+-+.++|+|+. .+|+||.. -|++.+||.+++..
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred chhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccceee
Confidence 87765432 2244678999999 99999864 57899999887753
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-19 Score=160.92 Aligned_cols=172 Identities=16% Similarity=0.302 Sum_probs=139.8
Q ss_pred ecCCCceeEEEEcCCCC-cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 162 VAHQGCVNRIRAMTQNP-HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
..|.+.|+++.|+|..+ .++|+|..-|+|-+||+..+.. ...-+..+..|..+|.+|.|+|.
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------------d~d~v~~f~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------------DKDGVYLFTPHSGPVSGLKFSPA 245 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------ccCceEEeccCCccccceEecCC
Confidence 35889999999999886 8999999999999999964211 13445678899999999999999
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCC-----------c------------------------------ccCCCccccCCCcE
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDAT-----------W------------------------------NVDPNPFIGHSASV 279 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~-----------~------------------------------~~~~~~~~~h~~~V 279 (358)
+..++++.|.||+|++-|+...-. + ......+.-|...|
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 988999999999999888754210 0 00012233577899
Q ss_pred EEEEECCCCCCEEEEEECCCcEEEEECCCCC--C-eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 280 EDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--S-ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 280 ~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~-~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
..|+++|..+.+|||||.|++++|||+|... . +......|...|++..|+|.+.. |+|.+.|..|+|||..
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 9999999999999999999999999999732 2 44556789999999999999955 8888999999999985
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=151.26 Aligned_cols=170 Identities=21% Similarity=0.375 Sum_probs=138.6
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC--
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP-- 239 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-- 239 (358)
..|...|..+...--+ ..|||++.|++|+||.+.... +.+++..+.||.++++.++|..
T Consensus 8 t~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~------------------~s~ll~~L~Gh~GPVwqv~wahPk 68 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNG------------------QSKLLAELTGHSGPVWKVAWAHPK 68 (299)
T ss_pred hhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCC------------------CceeeeEecCCCCCeeEEeecccc
Confidence 3577777777666666 799999999999999998731 1367889999999999999986
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC-CEEEEEECCCcEEEEECCCCC-C-eeEEE
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIWDTRVGK-S-ALTSF 316 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~las~s~Dg~I~iwD~r~~~-~-~~~~~ 316 (358)
.|. +||+++.||.|.||.-.+ +.|.. ...+..|.++|++|+|.|.+- -+||+++.||.|.|.+.+... . .-...
T Consensus 69 ~G~-iLAScsYDgkVIiWke~~-g~w~k-~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~ 145 (299)
T KOG1332|consen 69 FGT-ILASCSYDGKVIIWKEEN-GRWTK-AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIV 145 (299)
T ss_pred cCc-EeeEeecCceEEEEecCC-Cchhh-hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhh
Confidence 666 999999999999999866 46653 345778999999999999753 378888999999999998752 2 22334
Q ss_pred ecCCCCeEEEEEeCCC-------------CcEEEEEeCCCCEEEEeCCCC
Q 018322 317 KAHNADVNVISWNRLA-------------SCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~-------------~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.+|.-.||+++|.|.. .+.|+||+.|..|+||+..+.
T Consensus 146 ~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 146 FAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred hccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 7899999999999962 145999999999999998774
|
|
| >PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3 | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-21 Score=138.71 Aligned_cols=69 Identities=43% Similarity=0.704 Sum_probs=51.8
Q ss_pred CCcee--eeChhHHHhhhcccccCcceeEEEEeccC-CCccccCCceEEEEEeecCCCCCCceEEEEEeeccC
Q 018322 46 EGEEL--QCDPTAYNSLHAFHIGWPCLSFDIVRDTL-GLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNIS 115 (358)
Q Consensus 46 ~~~~l--~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~-~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~ 115 (358)
|+++| +.+|+||+++|++.++||||||||+|+.. +.+| .||++++|++||||++..+|+|+|++++++.
T Consensus 2 e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~-~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p~ 73 (74)
T PF12265_consen 2 EEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNR-NYPHSQYLLLGTQTSGQEQNYLYVMKVSLPS 73 (74)
T ss_dssp HHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT--SEEEEEEEEE---SS-S-EEEEEEEEEEE-
T ss_pred cceeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCC-CCccEEEEEEEECcCCCCCCEEEEEEEeCCC
Confidence 45677 88999999999999999999999999988 7888 8999999999999999999999999998654
|
1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A. |
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=157.94 Aligned_cols=210 Identities=17% Similarity=0.214 Sum_probs=160.9
Q ss_pred eecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEc
Q 018322 95 GTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAM 174 (358)
Q Consensus 95 GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~ 174 (358)
.|.++++.++.|.||+|+ +.....++.+|.|.|+.|++.
T Consensus 80 s~~aSGs~DG~VkiWnls-----------------------------------------qR~~~~~f~AH~G~V~Gi~v~ 118 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLS-----------------------------------------QRECIRTFKAHEGLVRGICVT 118 (433)
T ss_pred hhhhccccCceEEEEehh-----------------------------------------hhhhhheeecccCceeeEEec
Confidence 355566688899999985 334446778999999999998
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCccc-c---------ccc---cccccCC----CCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 175 TQNPHICASWADTGHVQVWDLRSHLNA-L---------AES---ETIVGQG----APQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 175 p~~~~~lat~s~dg~V~iwd~~~~~~~-~---------~~~---~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
. ..++|+++|.+|+.|-+...... + +.. ......+ .-......|+..+.--.+.+.++.|
T Consensus 119 ~---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 119 Q---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred c---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEec
Confidence 7 36788999999999986552110 0 000 0000000 0011345677788777788999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
+|.....|++|..|+.|.|||++...... .+ .-+..-+.|+|+| +...|++++.|..++.||+|....++....
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~----KV-i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~ 269 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLK----KV-ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHK 269 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccc----ee-eeeccccceecCc-cccceeeccccccceehhhhhhcccchhhc
Confidence 99998899999999999999999843321 11 1234567799999 666999999999999999999888998899
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.|.+.|..+.|+|.| .-+++||.|.+|+||..+....
T Consensus 270 dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 270 DHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred ccceeEEEeccCCCc-chhccccccceEEEeecCCCcc
Confidence 999999999999999 8999999999999999887653
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-20 Score=182.30 Aligned_cols=174 Identities=21% Similarity=0.308 Sum_probs=143.0
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE-EcCCCCCeEEEEe
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-FGGHKDEGYAIDW 237 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~ 237 (358)
.+...|.|.|..+.|++..++++|+|+.+|.|.|||+.+.. .|..- -..-..+|.+|+|
T Consensus 110 a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~--------------------tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 110 ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE--------------------TPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC--------------------CCCCCCCCCCcccceEecc
Confidence 56667999999999999998899999999999999999832 22111 1123468999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC---cEEEEECCCCCCeeE
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG---HIAIWDTRVGKSALT 314 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg---~I~iwD~r~~~~~~~ 314 (358)
+......|++|+.+|++.|||++.. +.++ .....+....+..|+|+|++.+.+++++.|. .|.+||+|....++.
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~-~pii-~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k 247 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKK-KPII-KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK 247 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCC-Cccc-ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh
Confidence 9887779999999999999999884 3231 1122222356889999999988888888764 799999999778888
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+..|...|.++.|++.++.+|+|++.|+.|.+|+..+++
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 8999999999999999998999999999999999998854
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-19 Score=152.95 Aligned_cols=179 Identities=22% Similarity=0.321 Sum_probs=139.5
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.|.|.||.+.+.+...+++.+|+.||.|.+||+......- .... ..... -......-.+|+-.|.++.|-|...
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e-~s~l-i~k~~----c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYE-ASGL-IAKHK----CIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchh-hccc-eehee----eeccccCCccceeeeeeeEEeeecC
Confidence 6999999999999877999999999999999998732110 0000 00000 0001112346888999999999999
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC--CCEEEEEECCCcEEEEECCCCCCeeEEEecCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
|.|.+++.|.++++||.++.+... .|. -.+.|.+-+|+|-. ..++|+|..+-.|++.|+.++ ...+++.+|.
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~----~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG-s~sH~LsGHr 188 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAV----DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG-SFSHTLSGHR 188 (397)
T ss_pred ceeecccccceEEEeecccceeeE----Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC-cceeeecccc
Confidence 999999999999999998743321 121 34567788888843 248888999999999999996 5888999999
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
..|.++.|+|..+..|+||+.||.|++||+|.-
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra 221 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA 221 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecc
Confidence 999999999999899999999999999999864
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-18 Score=150.17 Aligned_cols=168 Identities=18% Similarity=0.300 Sum_probs=143.2
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
....+.+|...|.++.|+.++ .+||||..+|.|+||...+ ......+..-...+.-|.
T Consensus 98 ~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~st---------------------g~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVST---------------------GGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred ceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEccc---------------------CceEEEeecccCceEEEE
Confidence 346788999999999999999 8999999999999999987 344455555566888999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
|+|.+. .|+.|+.||.+.+|.+.+.+. .+.+.||+.++++-.|.|+|. .++++..||+|++|++.++ ++++.+
T Consensus 156 WHp~a~-illAG~~DGsvWmw~ip~~~~----~kv~~Gh~~~ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg-~p~~~~ 228 (399)
T KOG0296|consen 156 WHPRAH-ILLAGSTDGSVWMWQIPSQAL----CKVMSGHNSPCTCGEFIPDGK-RILTGYDDGTIIVWNPKTG-QPLHKI 228 (399)
T ss_pred eccccc-EEEeecCCCcEEEEECCCcce----eeEecCCCCCcccccccCCCc-eEEEEecCceEEEEecCCC-ceeEEe
Confidence 999988 999999999999999987432 367899999999999999999 9999999999999999996 577776
Q ss_pred e-cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 317 K-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 317 ~-~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
. +......++.++..+ ..+++|+.++.+++-...+++
T Consensus 229 ~~~e~~~~~~~~~~~~~-~~~~~g~~e~~~~~~~~~sgK 266 (399)
T KOG0296|consen 229 TQAEGLELPCISLNLAG-STLTKGNSEGVACGVNNGSGK 266 (399)
T ss_pred cccccCcCCcccccccc-ceeEeccCCccEEEEccccce
Confidence 4 334567888999888 899999999999887766654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=168.71 Aligned_cols=166 Identities=22% Similarity=0.348 Sum_probs=143.8
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
.......+.+|...|.++...+ .++++|+.|.+|++|++.+ ...+..+.+|..+|.
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n---------------------~~~l~l~~~h~~~V~ 335 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTN---------------------GACLNLLRGHTGPVN 335 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccC---------------------cceEEEeccccccEE
Confidence 4456677889999999998876 5788899999999999997 677888888999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
++..+ +. ++++|+.||+|.+|++.+ .+.. ..+.+|+..|.++.+... . .+++|+.|++|++||++....++
T Consensus 336 ~v~~~--~~-~lvsgs~d~~v~VW~~~~-~~cl---~sl~gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~~c~ 406 (537)
T KOG0274|consen 336 CVQLD--EP-LLVSGSYDGTVKVWDPRT-GKCL---KSLSGHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKRKCI 406 (537)
T ss_pred EEEec--CC-EEEEEecCceEEEEEhhh-ceee---eeecCCcceEEEEEecCc-c-eEEeeeeccceEeecCCchhhhh
Confidence 99998 44 999999999999999986 4443 788999999999988765 3 89999999999999999853689
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.++..|.+-|+.+.+.. .+|++++.||+|++||...++.
T Consensus 407 ~tl~~h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 407 HTLQGHTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred hhhcCCccccccccccc---ceeEeccccccEEEeecccCce
Confidence 99999999997777653 7899999999999999987653
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-19 Score=174.60 Aligned_cols=179 Identities=22% Similarity=0.411 Sum_probs=148.4
Q ss_pred EEecCC-CceeEEEEcCCCCcEEEEEe--CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 160 RKVAHQ-GCVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 160 ~~~~H~-~~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
....|. ..|..|..+|++ ..+|||+ .||.++||+...-.......... -...+.....|.+.|.|+.
T Consensus 7 ~wv~H~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~---------l~k~l~~m~~h~~sv~CVR 76 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNEN---------LPKHLCTMDDHDGSVNCVR 76 (942)
T ss_pred cccccCCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcc---------cchhheeeccccCceeEEE
Confidence 344554 578999999999 7999999 89999999987643222211110 1466778889999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCC-CCC--------------cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPAS-DAT--------------WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~-~~~--------------~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (358)
|+|+|. +||+|+.|+.|.+|.... +.. |. ....+.+|.+.|.+++|+|++. +||+++.|++|
T Consensus 77 ~S~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk-~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsV 153 (942)
T KOG0973|consen 77 FSPDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWK-VVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSV 153 (942)
T ss_pred ECCCCC-eEeeccCcceEEEeeecccCCcccccccccccccceee-EEEEEecCCCccceeccCCCcc-EEEEecccceE
Confidence 999999 999999999999999863 100 11 1245778999999999999998 99999999999
Q ss_pred EEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 302 AIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.||+.++. ..+..+.+|.+.|-.+.|.|-| .+|||-++|++|+||.+..+
T Consensus 154 iiwn~~tF-~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw 203 (942)
T KOG0973|consen 154 IIWNAKTF-ELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDW 203 (942)
T ss_pred EEEccccc-eeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccc
Confidence 99999996 7888899999999999999999 99999999999999997653
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-18 Score=146.45 Aligned_cols=128 Identities=22% Similarity=0.388 Sum_probs=109.0
Q ss_pred CCeEE--EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCC
Q 018322 154 TPILQ--LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE 231 (358)
Q Consensus 154 ~~~~~--~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 231 (358)
+|.+. +...+|.+.|++++++- .++|+||.|-+|+|||+.. ...+..+..|.+.
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k---------------------~~qlg~ll~Hags 85 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVSG---PYVASGSSDETIHIYDMRK---------------------RKQLGILLSHAGS 85 (362)
T ss_pred ceeeeccccccccccceeEEEecc---eeEeccCCCCcEEEEeccc---------------------hhhhcceeccccc
Confidence 55443 56778999999999874 6999999999999999998 4566778889999
Q ss_pred eEEEEeCCCC-CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 232 GYAIDWNPIT-TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 232 v~~l~~s~~~-~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
|++|.|.+.. .+.|++|+.||.|.+|+... | .....+.+|+..|++|+.+|.+. +-++.+.|+.+++|++-.++
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~---W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---W-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCC---e-EEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCc
Confidence 9999998764 23799999999999999844 4 23578899999999999999999 99999999999999987654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=156.30 Aligned_cols=174 Identities=22% Similarity=0.362 Sum_probs=132.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCC-CCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 018322 178 PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQV-SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYL 256 (358)
Q Consensus 178 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~l 256 (358)
++++|.|+.+..|.|||+.-.......... ......+. ..++.-..-.+|++.|.+|.|+....+.|||||.|.+|.+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~L-Gs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTL-GSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceee-chhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 579999999999999999763222111110 00000000 0111222345799999999999998889999999999999
Q ss_pred EecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEE
Q 018322 257 WEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLL 336 (358)
Q Consensus 257 wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~l 336 (358)
||+.++ ++. ..+..|+..|.+++|+|..+.++++|+.|++|++.|+|.....-..+ ...+.|-.++|+|..+..+
T Consensus 271 WD~~~g-~p~---~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f 345 (463)
T KOG0270|consen 271 WDVDTG-KPK---SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSF 345 (463)
T ss_pred EEcCCC-Ccc---eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeE
Confidence 999884 433 56677999999999999999999999999999999999643222222 3456799999999998899
Q ss_pred EEEeCCCCEEEEeCCCCCCCC
Q 018322 337 ASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 337 asgs~Dg~i~iwDlr~~~~~l 357 (358)
+++.+||+|+-+|+|+...++
T Consensus 346 ~~~tddG~v~~~D~R~~~~~v 366 (463)
T KOG0270|consen 346 FVSTDDGTVYYFDIRNPGKPV 366 (463)
T ss_pred EEecCCceEEeeecCCCCCce
Confidence 999999999999999987664
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-17 Score=142.67 Aligned_cols=173 Identities=18% Similarity=0.167 Sum_probs=134.4
Q ss_pred CeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
......+.+|...|++|+.+|-+ ..+++++.|++|++||++. .++...+.....+ .
T Consensus 90 NkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~---------------------~~cqg~l~~~~~p--i 145 (311)
T KOG1446|consen 90 NKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRV---------------------KKCQGLLNLSGRP--I 145 (311)
T ss_pred CceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecC---------------------CCCceEEecCCCc--c
Confidence 34556788999999999999998 7999999999999999996 2343333322223 5
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccc-cCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
.+|.|.|- ++|+|.....|+|||+|..++-......+. +-....+.|.|||+|. .++.+...+.+++.|.-.+ ...
T Consensus 146 ~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~G-~~~ 222 (311)
T KOG1446|consen 146 AAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFDG-TVK 222 (311)
T ss_pred eeECCCCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccCC-cEe
Confidence 78999998 888888777999999998543221111122 3467899999999999 8888888999999999886 466
Q ss_pred EEEecCCCCe---EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 314 TSFKAHNADV---NVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 314 ~~~~~h~~~V---~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.++..+...- -...|.|++ .++++|+.||+|++|+++++.+
T Consensus 223 ~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 223 STFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred eeEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcE
Confidence 6665554322 467899999 9999999999999999988764
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.7e-20 Score=172.70 Aligned_cols=165 Identities=23% Similarity=0.411 Sum_probs=147.5
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.+..|...|+|++.-..+ ..+++|+.+-.+.||.+.. ..++..|.+|..+|.+|.|++
T Consensus 23 ~~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~k---------------------p~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGK---------------------PNAITSLTGHESPIESLTFDT 80 (825)
T ss_pred hhhhhhhhhceeeeeccc-eeeccCCCceeeccccccC---------------------CchhheeeccCCcceeeecCc
Confidence 345689999999985555 7999999999999999987 455667899999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
... +|++|+.+|+|++||+... +. .+++.+|...+.+|.|+|.+. ++|+|+.|+.+++||+|. ..|...+..|
T Consensus 81 ~E~-LlaagsasgtiK~wDleeA-k~---vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~ 153 (825)
T KOG0267|consen 81 SER-LLAAGSASGTIKVWDLEEA-KI---VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRK-KGCSHTYKSH 153 (825)
T ss_pred chh-hhcccccCCceeeeehhhh-hh---hhhhhccccCcceeeeccceE-Eeccccccccceehhhhc-cCceeeecCC
Confidence 987 9999999999999999763 32 378999999999999999998 889999999999999997 3588999999
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
...|+++.|+|+| .++++|++|.+++|||++.++
T Consensus 154 ~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk 187 (825)
T KOG0267|consen 154 TRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGK 187 (825)
T ss_pred cceeEEEeecCCC-ceeeccCCcceeeeecccccc
Confidence 9999999999999 999999999999999997664
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-18 Score=149.34 Aligned_cols=171 Identities=20% Similarity=0.337 Sum_probs=134.8
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.|-|.|+||.|.|++ ..+|+-. +..|.+|++........ .-+...-.+|....++-+|+|...
T Consensus 121 eavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~va---------------ev~ss~s~e~~~~ftsg~WspHHd 183 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVA---------------EVLSSESAEMRHSFTSGAWSPHHD 183 (370)
T ss_pred HHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchhe---------------eecccccccccceecccccCCCCc
Confidence 356899999999987 5566544 78999999987322110 001111123566788899999655
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
+..+....|+++..||+|+..... ..-..|...|.++.|+|+-+++|++|++||.|+|||+|..+.++..+..|...
T Consensus 184 gnqv~tt~d~tl~~~D~RT~~~~~---sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW 260 (370)
T KOG1007|consen 184 GNQVATTSDSTLQFWDLRTMKKNN---SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW 260 (370)
T ss_pred cceEEEeCCCcEEEEEccchhhhc---chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE
Confidence 544444559999999999854432 33456889999999999999999999999999999999988899999999999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
|.++.|+|....+|+|||.|..|.+|...+-
T Consensus 261 vW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 261 VWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred EEEEEecCccceEEEecCCCceeEEEecccc
Confidence 9999999998899999999999999987654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-19 Score=156.64 Aligned_cols=162 Identities=24% Similarity=0.302 Sum_probs=132.8
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-...|.+++|+|..+.+||+|+.|+.|.|||++. ..|+..+.- .-.-..|+|+|.+-
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~---------------------~~Pl~KVi~-~mRTN~IswnPeaf- 242 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQ---------------------ASPLKKVIL-TMRTNTICWNPEAF- 242 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEeccc---------------------CCccceeee-eccccceecCcccc-
Confidence 3578999999999999999999999999999987 455554322 22445899999655
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.|++|+.|..++.+|++...... ..+.+|.+.|.+|.|||.|. -|++||.|.+||||..+.+...-.-...--..|
T Consensus 243 nF~~a~ED~nlY~~DmR~l~~p~---~v~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V 318 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNLSRPL---NVHKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHV 318 (433)
T ss_pred ceeeccccccceehhhhhhcccc---hhhcccceeEEEeccCCCcc-hhccccccceEEEeecCCCcchhhhhHhhhhee
Confidence 89999999999999998865543 77889999999999999999 999999999999999987543211112234569
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.|+.|+-+. .++++||+|+.|++|-....
T Consensus 319 ~~Vk~S~Ds-kyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 319 FCVKYSMDS-KYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred eEEEEeccc-cEEEecCCCcceeeeecchh
Confidence 999999999 99999999999999987543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-18 Score=154.53 Aligned_cols=173 Identities=17% Similarity=0.260 Sum_probs=141.7
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC-CCCeEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-KDEGYAI 235 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l 235 (358)
+...+..|+..|+++.++-.. .+||+++.-|.|.|..+... .....|... ...+.-|
T Consensus 113 ~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~---------------------~~tt~f~~~sgqsvRll 170 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTK---------------------QKTTTFTIDSGQSVRLL 170 (673)
T ss_pred HhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccC---------------------ccccceecCCCCeEEEe
Confidence 335567899999999999877 79999999999999998872 222233322 3466789
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
.+++....+|.+++.+|.|.|||+....... .....|..+...|+|+|...-+|++.+.|..|.+||+++. .....
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp~~---~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-~s~~~ 246 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQGMSPIF---HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-ASTDR 246 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccCCCccc---chhhhccCCcCcceecCCccceEEEecccceEEEeecccc-cccce
Confidence 9999988788999999999999997643322 4456699999999999999889999999999999999973 33333
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
+ ....+...++|.++| .+|+.|...|.|..||+|..+.|+
T Consensus 247 l-~y~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 247 L-TYSHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred e-eecCCcceeeecCCc-eEEEeecCCceEEEEecccCCCCc
Confidence 3 345678999999999 999999999999999999999886
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.6e-18 Score=159.94 Aligned_cols=156 Identities=26% Similarity=0.353 Sum_probs=136.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|...|.++....++ .+++||-|.++++|-... ....+.+|+..|+++..-
T Consensus 95 ~~LkgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~-----------------------l~~~l~gH~asVWAv~~l 149 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGE-----------------------LVYSLQGHTASVWAVASL 149 (745)
T ss_pred hhhhccccceeeeecCCcC--ceEecccccceEEecchh-----------------------hhcccCCcchheeeeeec
Confidence 4677999999999998887 389999999999998765 344588999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|.+ .++||+.|.+|++|.-. .. .+.|.+|+..|..+++-+.+. |+||+.||.|++|++.. .++....+
T Consensus 150 ~e~--~~vTgsaDKtIklWk~~---~~---l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~g--e~l~~~~g 217 (745)
T KOG0301|consen 150 PEN--TYVTGSADKTIKLWKGG---TL---LKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG--EVLLEMHG 217 (745)
T ss_pred CCC--cEEeccCcceeeeccCC---ch---hhhhccchhheeeeEEecCCC--eEeecCCceEEEEeccC--ceeeeeec
Confidence 987 79999999999999763 22 478999999999999999875 99999999999999943 58889999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
|.+-|.+++...++ .+++|++.|++++||+...
T Consensus 218 htn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 218 HTNFVYSISMALSD-GLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred cceEEEEEEecCCC-CeEEEecCCceEEEeecCc
Confidence 99999999966666 7999999999999998753
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-17 Score=134.90 Aligned_cols=186 Identities=20% Similarity=0.300 Sum_probs=133.1
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc---EEEcCCCC
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL---VKFGGHKD 230 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~ 230 (358)
+.+.-+....-...|..+.|.|.| .+.|.|+...+.+|................ ...|. ..-+.|.+
T Consensus 21 ~~f~~i~~l~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~---------~~pp~v~~kr~khhkg 90 (350)
T KOG0641|consen 21 KHFEAINILEDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAA---------KQPPSVLCKRNKHHKG 90 (350)
T ss_pred cceEEEEEecchhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccc---------cCCCeEEeeeccccCc
Confidence 334446666778999999999999 799999999999998765522111111000 11112 22356889
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc---------------------------------------------
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW--------------------------------------------- 265 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~--------------------------------------------- 265 (358)
.|+|.+|+|.|. +|++|++|++|++.-++.....
T Consensus 91 siyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td 169 (350)
T KOG0641|consen 91 SIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD 169 (350)
T ss_pred cEEEEEecCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee
Confidence 999999999999 9999999999998766542100
Q ss_pred ---ccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe--cC-----CCCeEEEEEeCCCCcE
Q 018322 266 ---NVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--AH-----NADVNVISWNRLASCL 335 (358)
Q Consensus 266 ---~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--~h-----~~~V~~i~~~p~~~~~ 335 (358)
-.....+.+|++-|.++ ++-++. +|++|+.|.+||+||+|-+ .++.++. .| .+.|.+++..|.| ++
T Consensus 170 c~~g~~~~a~sghtghilal-yswn~~-m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsg-rl 245 (350)
T KOG0641|consen 170 CGRGQGFHALSGHTGHILAL-YSWNGA-MFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSG-RL 245 (350)
T ss_pred cCCCCcceeecCCcccEEEE-EEecCc-EEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCc-ce
Confidence 00112344666666655 222344 8999999999999999984 5666652 23 3579999999999 99
Q ss_pred EEEEeCCCCEEEEeCCCCC
Q 018322 336 LASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 336 lasgs~Dg~i~iwDlr~~~ 354 (358)
|++|-.|....+||+|.++
T Consensus 246 l~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRGGR 264 (350)
T ss_pred eeeccCCCceEEEEeeCCc
Confidence 9999999999999999764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-18 Score=153.09 Aligned_cols=162 Identities=17% Similarity=0.301 Sum_probs=140.7
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
..|...|.++++++++ .+||||+.|..|.||+..+ ..++..+.+|.+.|.+|+|-...
T Consensus 199 ~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t---------------------~ehv~~~~ghr~~V~~L~fr~gt 256 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDT---------------------LEHVKVFKGHRGAVSSLAFRKGT 256 (479)
T ss_pred ccccceeEEEEEcCCC-cEEEecCCCceEEEecCcc---------------------cchhhcccccccceeeeeeecCc
Confidence 4899999999999999 8999999999999999998 68888899999999999998766
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
. .|++++.|++|++|++..... ..++.+|.+.|.+|.-..-++ ++-.|+.|+++++|++.. .....+.+|.+
T Consensus 257 ~-~lys~s~Drsvkvw~~~~~s~----vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~e--esqlifrg~~~ 328 (479)
T KOG0299|consen 257 S-ELYSASADRSVKVWSIDQLSY----VETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPE--ESQLIFRGGEG 328 (479)
T ss_pred c-ceeeeecCCceEEEehhHhHH----HHHHhCCccceeeechhcccc-eEEeccccceeEEEeccc--cceeeeeCCCC
Confidence 5 999999999999999976332 367889999999998887777 666677999999999955 34456788998
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+-|++|-.+. .++|||++|.|.+|++-+.++
T Consensus 329 sidcv~~In~~--HfvsGSdnG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 329 SIDCVAFINDE--HFVSGSDNGSIALWSLLKKKP 360 (479)
T ss_pred CeeeEEEeccc--ceeeccCCceEEEeeecccCc
Confidence 99999997654 799999999999999977653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-17 Score=146.31 Aligned_cols=162 Identities=20% Similarity=0.286 Sum_probs=133.0
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC--CCCCeEEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG--HKDEGYAID 236 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~ 236 (358)
.....|.++|+.+..+|.+ .+|.+++.||+....|+.. ...+..... ..-++++++
T Consensus 297 ~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~---------------------g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISS---------------------GSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred cccccccccceeeeeccCC-cEEEEecCCceEEEEEccC---------------------CcEEEEEeeccccceeEEee
Confidence 3456899999999999999 7888999999999999987 333333322 223689999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
|+|+|. +|.+|..||.|++||+.++.. ...|.+|+++|..|+|+.+|- ++|+++.|+.|++||+|... ...++
T Consensus 355 fHpDgL-ifgtgt~d~~vkiwdlks~~~----~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLRKl~-n~kt~ 427 (506)
T KOG0289|consen 355 FHPDGL-IFGTGTPDGVVKIWDLKSQTN----VAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLRKLK-NFKTI 427 (506)
T ss_pred EcCCce-EEeccCCCceEEEEEcCCccc----cccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEehhhc-cccee
Confidence 999998 999999999999999987542 368999999999999999987 99999999999999999853 34444
Q ss_pred e-cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 317 K-AHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 317 ~-~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
. .....|+++.|.+.| .+|+.++.|=+|++++-
T Consensus 428 ~l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSG-TYLGIAGSDLQVYICKK 461 (506)
T ss_pred eccccccceeEEEcCCC-CeEEeecceeEEEEEec
Confidence 2 233479999999999 88888888877777763
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=149.35 Aligned_cols=164 Identities=23% Similarity=0.250 Sum_probs=135.9
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.+.+|.+.|.+++|-... .-+.+++.|++|++|++.. ...+.++.||.+.|.+|+-..
T Consensus 239 ~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~---------------------~s~vetlyGHqd~v~~IdaL~ 296 (479)
T KOG0299|consen 239 VFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQ---------------------LSYVETLYGHQDGVLGIDALS 296 (479)
T ss_pred cccccccceeeeeeecCc-cceeeeecCCceEEEehhH---------------------hHHHHHHhCCccceeeechhc
Confidence 367899999999998755 6788889999999999987 456677889999999999887
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-ec
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KA 318 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~ 318 (358)
.+. .+-+|+.|++++||++....+ ..|.+|.+.+.|++|-.+. .|++||.+|.|.+|++-.. +++.+. .+
T Consensus 297 reR-~vtVGgrDrT~rlwKi~eesq-----lifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KK-kplf~~~~A 367 (479)
T KOG0299|consen 297 RER-CVTVGGRDRTVRLWKIPEESQ-----LIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKK-KPLFTSRLA 367 (479)
T ss_pred ccc-eEEeccccceeEEEeccccce-----eeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeeccc-CceeEeecc
Confidence 776 666677999999999965433 4588899999999998765 6999999999999999874 455543 34
Q ss_pred CC-----------CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 319 HN-----------ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 319 h~-----------~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
|. .+|++|+..|.. .++|+|+.+|.|++|-+..+-+
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ccccCCccccccccceeeeEecccC-ceEEecCCCCceEEEEecCCcc
Confidence 42 379999999988 9999999999999999876633
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-17 Score=157.21 Aligned_cols=163 Identities=14% Similarity=0.232 Sum_probs=132.2
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
.+-++++++|+.+| .++|.||+|-.|++-++.. .....++.+|.++|.+|.++|.+.
T Consensus 95 ftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D---------------------~s~~~~lrgh~apVl~l~~~p~~~- 151 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDD---------------------SSQEKVLRGHDAPVLQLSYDPKGN- 151 (933)
T ss_pred eeccceEEEEecCC-cEEEeecCceeEEEEeccc---------------------cchheeecccCCceeeeeEcCCCC-
Confidence 35678999999999 7999999999999999887 456678999999999999999998
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCC---Ccccc-CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE--e
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDP---NPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--K 317 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~---~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--~ 317 (358)
+||+.++||.|++|++.++....... ..... ....+..++|+|++. .|+..+.|+.|++|+.... .....+ .
T Consensus 152 fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~~w-e~~f~Lr~~ 229 (933)
T KOG1274|consen 152 FLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRKGW-ELQFKLRDK 229 (933)
T ss_pred EEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccCCc-eeheeeccc
Confidence 99999999999999998742211000 01111 246678899999988 7888889999999998763 344444 4
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+.+.+++++|+|+| .+||+++.||.|.|||..+
T Consensus 230 ~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 230 LSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ccccceEEEEEcCCC-cEEeeeccCCcEEEEeccc
Confidence 455569999999999 9999999999999999984
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=137.33 Aligned_cols=221 Identities=19% Similarity=0.220 Sum_probs=166.4
Q ss_pred CCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCC
Q 018322 46 EGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNK 125 (358)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~ 125 (358)
+++-..||-..-++.-.+..+-|-|.+.+.++. .++.|+ -+++|.++++. .
T Consensus 34 DgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~------------~~~~G~-----~dg~vr~~Dln-~----------- 84 (323)
T KOG1036|consen 34 DGSLRLYDVPANSLKLKFKHGAPLLDCAFADES------------TIVTGG-----LDGQVRRYDLN-T----------- 84 (323)
T ss_pred cCcEEEEeccchhhhhheecCCceeeeeccCCc------------eEEEec-----cCceEEEEEec-C-----------
Confidence 677777887777999999999999999998863 556666 56799999883 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 018322 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAES 205 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~ 205 (358)
.+ ....-.|..+|.||.+++.. ..+++||-|++|++||.+.
T Consensus 85 ----------------------------~~--~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~-------- 125 (323)
T KOG1036|consen 85 ----------------------------GN--EDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRN-------- 125 (323)
T ss_pred ----------------------------Cc--ceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccc--------
Confidence 00 12345799999999999876 6899999999999999986
Q ss_pred cccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEEC
Q 018322 206 ETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS 285 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s 285 (358)
..+...+. ....|++++.+. . .|++|..+..|.+||+++..... ...-..-+-.+.+|++-
T Consensus 126 -------------~~~~~~~d-~~kkVy~~~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~ 186 (323)
T KOG1036|consen 126 -------------KVVVGTFD-QGKKVYCMDVSG--N-RLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALV 186 (323)
T ss_pred -------------cccccccc-cCceEEEEeccC--C-EEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEe
Confidence 12222332 223888887754 3 89999999999999999854422 11122345678999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCC---CeeEEEecCCC---------CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 286 PTEPDVFASCSVDGHIAIWDTRVGK---SALTSFKAHNA---------DVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~---~~~~~~~~h~~---------~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
|++. -++.++-||.|.+=.+.... ..-..++.|.. +||+|+|+|-. ..||||+.||.|.+||+.+.
T Consensus 187 pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 187 PNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred cCCC-ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcch
Confidence 9777 78999999999886665421 12334566643 69999999987 89999999999999999876
Q ss_pred CC
Q 018322 354 KV 355 (358)
Q Consensus 354 ~~ 355 (358)
++
T Consensus 265 Kr 266 (323)
T KOG1036|consen 265 KR 266 (323)
T ss_pred hh
Confidence 54
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=138.36 Aligned_cols=160 Identities=16% Similarity=0.247 Sum_probs=132.7
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-.+.|+++.|+++| .++++++.|-+++|||... ++.+.++..++-.+..++|.....
T Consensus 13 ~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~---------------------g~~~~ti~skkyG~~~~~Fth~~~- 69 (311)
T KOG1446|consen 13 TNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLS---------------------GKQVKTINSKKYGVDLACFTHHSN- 69 (311)
T ss_pred CCCceeEEEecCCC-CEEEEecCCCeEEEEEcCC---------------------CceeeEeecccccccEEEEecCCc-
Confidence 46899999999999 6788889999999999987 577777777777888888887776
Q ss_pred eEEEEeC--CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 244 RLVTGDC--NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 244 ~l~sgs~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
.++.++. |.+|+..++.+ .+.+ +.|.||+..|++|+.+|-+. .|+|++.|++||+||+|.. .+...+...
T Consensus 70 ~~i~sStk~d~tIryLsl~d-Nkyl---RYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~-~cqg~l~~~-- 141 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHD-NKYL---RYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVK-KCQGLLNLS-- 141 (311)
T ss_pred eEEEccCCCCCceEEEEeec-CceE---EEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCC-CCceEEecC--
Confidence 6666665 88999999977 4443 78999999999999999997 9999999999999999974 444444333
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.-..++|.|.| -++|++...+.|+|||+|+...
T Consensus 142 ~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 142 GRPIAAFDPEG-LIFALANGSELIKLYDLRSFDK 174 (311)
T ss_pred CCcceeECCCC-cEEEEecCCCeEEEEEecccCC
Confidence 33457999999 8888888877999999999854
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.2e-18 Score=150.63 Aligned_cols=215 Identities=20% Similarity=0.270 Sum_probs=152.4
Q ss_pred HHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCC
Q 018322 56 AYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDS 135 (358)
Q Consensus 56 ~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (358)
+-..++.+ +|-+-.+.|+++. -.|..| +.+-.|.+|++.. .
T Consensus 167 ~~~~ld~h--~gev~~v~~l~~s-----------dtlatg-----g~Dr~Ik~W~v~~-~-------------------- 207 (459)
T KOG0288|consen 167 ALFVLDAH--EGEVHDVEFLRNS-----------DTLATG-----GSDRIIKLWNVLG-E-------------------- 207 (459)
T ss_pred hhhhhhcc--ccccceeEEccCc-----------chhhhc-----chhhhhhhhhccc-c--------------------
Confidence 44455544 7999999999873 233333 3455788888730 0
Q ss_pred CCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCC
Q 018322 136 ESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQ 215 (358)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~ 215 (358)
+--+...+.+-.|.|+++.|.+++ ..+++.+.|+.+++|++..
T Consensus 208 ------------------k~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~------------------ 250 (459)
T KOG0288|consen 208 ------------------KSELISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDS------------------ 250 (459)
T ss_pred ------------------hhhhhhhhhccCCCcceeeecCCC-ceEEeecCCCceeeeeccc------------------
Confidence 112334566778999999999999 5677779999999999987
Q ss_pred CCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccC--------------CCccccC------
Q 018322 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD--------------PNPFIGH------ 275 (358)
Q Consensus 216 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~--------------~~~~~~h------ 275 (358)
.+...++.||++.|+++.|..... .+++|+.|.+|++||+... .+... ...+.+|
T Consensus 251 ---~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~-~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 251 ---LRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKA-YCSKTVLPGSQCNDIVCSISDVISGHFDKKVR 325 (459)
T ss_pred ---hhhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhh-heeccccccccccceEecceeeeecccccceE
Confidence 577788999999999999988776 6899999999999998762 11100 0001111
Q ss_pred ---------------CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec----CCCCeEEEEEeCCCCcEE
Q 018322 276 ---------------SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA----HNADVNVISWNRLASCLL 336 (358)
Q Consensus 276 ---------------~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~----h~~~V~~i~~~p~~~~~l 336 (358)
.+.|+++..++++. -+.+++.|.++.+.|+|+. .....+.+ ..++.+.+.|+|++ .|+
T Consensus 326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~-~Yv 402 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGGRVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDG-SYV 402 (459)
T ss_pred EEeccCCceeeEeecCcceeeEeeccCCe-EEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCCC-cee
Confidence 23566666666666 5556677777777777763 33344432 23458999999999 999
Q ss_pred EEEeCCCCEEEEeCCCCC
Q 018322 337 ASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 337 asgs~Dg~i~iwDlr~~~ 354 (358)
|+||.||.|+||++.+++
T Consensus 403 aAGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 403 AAGSADGSVYIWSVFTGK 420 (459)
T ss_pred eeccCCCcEEEEEccCce
Confidence 999999999999998765
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=151.86 Aligned_cols=172 Identities=23% Similarity=0.339 Sum_probs=139.2
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC--CCCeEEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH--KDEGYAID 236 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~ 236 (358)
+....|-.-|..+.++... ..+.||+. |.|+|||+....+ ..|+..+... ..-+.+..
T Consensus 413 ~~tL~HGEvVcAvtIS~~t-rhVyTgGk-gcVKVWdis~pg~------------------k~PvsqLdcl~rdnyiRSck 472 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPT-RHVYTGGK-GCVKVWDISQPGN------------------KSPVSQLDCLNRDNYIRSCK 472 (705)
T ss_pred hhhhccCcEEEEEEecCCc-ceeEecCC-CeEEEeeccCCCC------------------CCccccccccCcccceeeeE
Confidence 3455687778888887766 67888776 8899999988532 3444444332 34688899
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
..|++. .|++|+.-.++.|||+......+ ...+......+..++.+|+.. +.++|..||.|+|||++. ...+..+
T Consensus 473 L~pdgr-tLivGGeastlsiWDLAapTpri--kaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhn-q~~Vrqf 547 (705)
T KOG0639|consen 473 LLPDGR-TLIVGGEASTLSIWDLAAPTPRI--KAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHN-QTLVRQF 547 (705)
T ss_pred ecCCCc-eEEeccccceeeeeeccCCCcch--hhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEccc-ceeeecc
Confidence 999998 99999999999999998754433 233444446788899999998 888999999999999998 4688889
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
.+|...+.||..+++| ..|-||+-|.+|+.||+|.++++
T Consensus 548 qGhtDGascIdis~dG-tklWTGGlDntvRcWDlregrql 586 (705)
T KOG0639|consen 548 QGHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQL 586 (705)
T ss_pred cCCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhhh
Confidence 9999999999999999 99999999999999999988764
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=147.85 Aligned_cols=128 Identities=27% Similarity=0.475 Sum_probs=113.7
Q ss_pred EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcc---cCCCccccCCCcEEEEEECCCCCCEEEEEECCCc
Q 018322 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN---VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~ 300 (358)
.+.||+++|..++|+|.+...|||||.|.+|.||++...+... .....+.+|...|.-|+|+|...++|+|++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999998899999999999999997754321 1234578999999999999999999999999999
Q ss_pred EEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 301 IAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 301 I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|.||++.++ ..+.++. |...|.+++||.+| .+|+|.+.|..|+|||.|+++
T Consensus 156 v~iWnv~tg-eali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 156 VSIWNVGTG-EALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred EEEEeccCC-ceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCc
Confidence 999999996 4566676 99999999999999 999999999999999999875
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-17 Score=140.80 Aligned_cols=188 Identities=17% Similarity=0.205 Sum_probs=132.2
Q ss_pred CeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccc---------ccccccCCCCC-C-----CCC
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAE---------SETIVGQGAPQ-V-----SNQ 219 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~---------~~~~~~~~~~~-~-----~~~ 219 (358)
|.....+.+|.+.|++++|+.+| ..|||++.|++|+||++....+.-.. ......+...- . ..+
T Consensus 76 pl~~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 76 PLNVSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred chhhhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 44445678999999999999999 89999999999999999763221110 00000000000 0 001
Q ss_pred CCcE-----------------------EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCC
Q 018322 220 SPLV-----------------------KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS 276 (358)
Q Consensus 220 ~~~~-----------------------~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~ 276 (358)
..+. .-..|+-.+-.+-....+. +|+|++.|..|+||+++ ++.. ..+....
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk--Gq~L---~~idtnq 228 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK--GQLL---QSIDTNQ 228 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC--Ccee---eeecccc
Confidence 1111 1122344455555555555 99999999999999997 3322 3444445
Q ss_pred CcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-------CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 277 ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-------SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 277 ~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-------~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
..-+..+.||+|+ ++|+++.---|++|.+--.+ ..+..+++|.+.|..++|+++. ..++|.|.||+++|||
T Consensus 229 ~~n~~aavSP~GR-Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 229 SSNYDAAVSPDGR-FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-TRAVTVSKDGKWRIWD 306 (420)
T ss_pred ccccceeeCCCCc-EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-ceeEEEecCCcEEEee
Confidence 5566788999999 99999999999999874322 1456789999999999999998 8999999999999999
Q ss_pred CC
Q 018322 350 LR 351 (358)
Q Consensus 350 lr 351 (358)
+.
T Consensus 307 td 308 (420)
T KOG2096|consen 307 TD 308 (420)
T ss_pred cc
Confidence 75
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-16 Score=134.32 Aligned_cols=178 Identities=18% Similarity=0.389 Sum_probs=135.4
Q ss_pred CeEEEEEecCCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE-------EEc
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-------KFG 226 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 226 (358)
=+...++..-.+.|+.|.|.|.. ...+|+++.||.||||+.....+.. +..... ...
T Consensus 102 Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs---------------~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 102 WVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS---------------QWTLQHEIQNVIDPPG 166 (361)
T ss_pred eEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc---------------cchhhhhhhhccCCcc
Confidence 34446677788999999999965 4789999999999999987632211 111111 122
Q ss_pred CCCCCeEEEEeCCCC--CCeEEEEeCC-----CcEEEEecCCCC-CcccCCCccccCCCcEEEEEECCCCC---CEEEEE
Q 018322 227 GHKDEGYAIDWNPIT--TGRLVTGDCN-----SCIYLWEPASDA-TWNVDPNPFIGHSASVEDLQWSPTEP---DVFASC 295 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~--~~~l~sgs~d-----g~I~lwd~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~~~---~~las~ 295 (358)
.+..+..|+.|+|.. ..+||.|+.+ +.+.||.....+ +|. ....+.+|+.+|++|+|.|+-. +++|++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~-kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL-KVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee-eehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 466788999999763 2278888865 589999887766 443 2456779999999999999642 489999
Q ss_pred ECCCcEEEEECCCCC-------------------CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 296 SVDGHIAIWDTRVGK-------------------SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 296 s~Dg~I~iwD~r~~~-------------------~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+.|| |+||.++... ..+..+..|++.|..+.||=.| .+|++.|+||.|++|..
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKA 317 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhh
Confidence 9999 9999997311 1233457899999999999999 99999999999999964
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-16 Score=131.79 Aligned_cols=158 Identities=22% Similarity=0.298 Sum_probs=132.3
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.....++-+.|+-.+..+++| +..|+|.|..+.. .+|+..+..|.....||.|+|.|.
T Consensus 145 ~~~~e~ne~~w~~~nd~Fflt-~GlG~v~ILsyps---------------------Lkpv~si~AH~snCicI~f~p~Gr 202 (313)
T KOG1407|consen 145 QFKFEVNEISWNNSNDLFFLT-NGLGCVEILSYPS---------------------LKPVQSIKAHPSNCICIEFDPDGR 202 (313)
T ss_pred cccceeeeeeecCCCCEEEEe-cCCceEEEEeccc---------------------cccccccccCCcceEEEEECCCCc
Confidence 345778889998666444444 6669999999886 689999999999999999999999
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
+||+|+.|..+-|||+... +..+.+..+.=+|..|+||.+|+ +||++|.|..|-|=++.++. .+..+ .+.++
T Consensus 203 -yfA~GsADAlvSLWD~~EL----iC~R~isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd-~~~eI-~~~~~ 274 (313)
T KOG1407|consen 203 -YFATGSADALVSLWDVDEL----ICERCISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGD-RVWEI-PCEGP 274 (313)
T ss_pred -eEeeccccceeeccChhHh----hhheeeccccCceEEEEeccCcc-eeeccCccceEEeEecccCC-eEEEe-eccCC
Confidence 9999999999999999762 22467888889999999999999 99999999999999999975 55555 47788
Q ss_pred eEEEEEeCCCCcEEEEEeCC---------CCEEEEeCC
Q 018322 323 VNVISWNRLASCLLASGSDD---------GTFSIHDLR 351 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~D---------g~i~iwDlr 351 (358)
.+.++|+|.. .+||-+++| |.|+||-+.
T Consensus 275 t~tVAWHPk~-~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 275 TFTVAWHPKR-PLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred ceeEEecCCC-ceeeEEecCCCCccccccceeEEecCC
Confidence 9999999999 888877653 678887654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=154.10 Aligned_cols=175 Identities=22% Similarity=0.297 Sum_probs=141.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE-EEcCCCCCeEEEEe
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDW 237 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~ 237 (358)
..+.+|+|+|||+.|+.+| .+||+||+|-.+.|||.-. .+++. .-.||...|+++.|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~---------------------~KllhsI~TgHtaNIFsvKF 101 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFE---------------------YKLLHSISTGHTANIFSVKF 101 (758)
T ss_pred hhhccccceecceeecCCC-CEEeecCCcceEEeecchh---------------------cceeeeeecccccceeEEee
Confidence 5577999999999999999 7999999999999999876 34444 45689999999999
Q ss_pred CCCCCC-eEEEEeCCCcEEEEecCCCCC------cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 238 NPITTG-RLVTGDCNSCIYLWEPASDAT------WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 238 s~~~~~-~l~sgs~dg~I~lwd~~~~~~------~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
-|...+ +++||..|..|+|+|+..... .......+..|+..|-.|+-.|.+++.|-+++.||+|+-+|+|.+.
T Consensus 102 vP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 102 VPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred eccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 997543 788999999999999975211 2223456778999999999999999999999999999999999854
Q ss_pred CeeEEE---------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 311 SALTSF---------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 311 ~~~~~~---------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+-... ...--...|+..+|..+.+||.|+.|--.++||.|...+
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lk 235 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLK 235 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhcc
Confidence 322211 111234678999999999999999999999999765443
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=138.43 Aligned_cols=174 Identities=22% Similarity=0.377 Sum_probs=139.1
Q ss_pred EEEecCCCceeEEEEcCC-CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC-CCeEEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-DEGYAID 236 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~ 236 (358)
-.+.+|++.+|.++|... +++.+.+|+.||+|++||++.. ...++..+.+|. .+..+++
T Consensus 64 ~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~-------------------~e~a~~~~~~~~~~~f~~ld 124 (376)
T KOG1188|consen 64 EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ-------------------AESARISWTQQSGTPFICLD 124 (376)
T ss_pred heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc-------------------hhhhheeccCCCCCcceEee
Confidence 445689999999999875 6789999999999999999884 234556666666 4677888
Q ss_pred eCCCCCCeEEEEe----CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-
Q 018322 237 WNPITTGRLVTGD----CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS- 311 (358)
Q Consensus 237 ~s~~~~~~l~sgs----~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~- 311 (358)
-+-.+. .+++|. .+-.+.+||+|...+.. ..-+..|...|++|+|+|+.+++|+|||.||.|.|||+.....
T Consensus 125 ~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l--~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 125 LNCKKN-IIACGTELTRSDASVVLWDVRSEQQLL--RQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred ccCcCC-eEEeccccccCceEEEEEEeccccchh--hhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 776665 777774 46789999999865533 2345679999999999999999999999999999999987432
Q ss_pred -eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 312 -ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 312 -~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+...-.|.+.|.++.|...+-..|.+-+..+++.+|++..+.
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 4455556888899999998774568888899999999998765
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.2e-17 Score=145.65 Aligned_cols=169 Identities=17% Similarity=0.268 Sum_probs=141.9
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
..+--+|.|+++..+|.| .+++.|+..|.|++|.+.+ +..+..+.+|-..|+||.|+-
T Consensus 76 q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelss---------------------G~LL~v~~aHYQ~ITcL~fs~ 133 (476)
T KOG0646|consen 76 QYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSS---------------------GILLNVLSAHYQSITCLKFSD 133 (476)
T ss_pred hhcccccceeeeecCCCc-eEEEeecccCcEEEEEecc---------------------ccHHHHHHhhccceeEEEEeC
Confidence 344468999999999999 7888888999999999998 677888899999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCC-----CCcccCCCccccCCCcEEEEEECCCC-CCEEEEEECCCcEEEEECCCCCCee
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASD-----ATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~-----~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
++. +|+||+.||.|++|.+..- .....+...|..|+-+|+++...+.+ ...++|+|.|.++++||+..+ ..+
T Consensus 134 dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LL 211 (476)
T KOG0646|consen 134 DGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLL 211 (476)
T ss_pred CCc-EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc-eee
Confidence 998 9999999999999987531 11233356788999999999988763 348999999999999999985 344
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.++ .....+++++..|.+ +.++.|+.+|.|.+.++-+..
T Consensus 212 lti-~fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~ 250 (476)
T KOG0646|consen 212 LTI-TFPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLS 250 (476)
T ss_pred EEE-ecCCcceeEEEcccc-cEEEecCCcceEEeeehhcCC
Confidence 444 356679999999999 999999999999999887654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-17 Score=141.50 Aligned_cols=151 Identities=21% Similarity=0.331 Sum_probs=123.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC-CCCeEEEEeCCCcEEEE
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI-TTGRLVTGDCNSCIYLW 257 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~~l~sgs~dg~I~lw 257 (358)
..+|++-.+|.|+|||..+ .+.+..|+++...+..+.|... +...+.+|+.||+|++|
T Consensus 41 ~~vav~lSngsv~lyd~~t---------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT---------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred eeEEEEecCCeEEEEeccc---------------------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 5788889999999999987 5777889999888888888774 44488999999999999
Q ss_pred ecCCCCCcccCCCccccCC-CcEEEEEECCCCCCEEEEEEC----CCcEEEEECCCCCCeeEEE-ecCCCCeEEEEEeCC
Q 018322 258 EPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCSV----DGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRL 331 (358)
Q Consensus 258 d~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s~----Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~~p~ 331 (358)
|+|...... ...+..|. .+..+++.+..+. ++++|.. +-.|.+||+|...+++..+ ..|..+|++|+|+|.
T Consensus 100 D~Rs~~e~a--~~~~~~~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 100 DIRSQAESA--RISWTQQSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS 176 (376)
T ss_pred Eeecchhhh--heeccCCCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC
Confidence 999865533 23444554 5677777766666 8888764 6789999999976656555 789999999999999
Q ss_pred CCcEEEEEeCCCCEEEEeCCCC
Q 018322 332 ASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 332 ~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.+.+|+|||.||.|.|||+...
T Consensus 177 ~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 177 DPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred CCCeEEeecccceEEeeecCCC
Confidence 9999999999999999999754
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-17 Score=162.22 Aligned_cols=217 Identities=21% Similarity=0.355 Sum_probs=172.6
Q ss_pred hcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCC
Q 018322 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDS 140 (358)
Q Consensus 61 ~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (358)
+.-...-|.+++||-|... ..|+.| +.++.|.||++.++..
T Consensus 111 ~~~~h~G~V~gLDfN~~q~----------nlLASG-----a~~geI~iWDlnn~~t------------------------ 151 (1049)
T KOG0307|consen 111 TKSKHTGPVLGLDFNPFQG----------NLLASG-----ADDGEILIWDLNKPET------------------------ 151 (1049)
T ss_pred hhcccCCceeeeeccccCC----------ceeecc-----CCCCcEEEeccCCcCC------------------------
Confidence 3445567788888876531 234434 4677999999965321
Q ss_pred CCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCC
Q 018322 141 DEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQS 220 (358)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (358)
|.- .-...-.+.|.+++|+.+-.++||+++.+|++.|||++. .+
T Consensus 152 --------------P~~-~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~---------------------~~ 195 (1049)
T KOG0307|consen 152 --------------PFT-PGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK---------------------KK 195 (1049)
T ss_pred --------------CCC-CCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC---------------------CC
Confidence 111 003346789999999998889999999999999999998 46
Q ss_pred CcEEEcCCCC--CeEEEEeCCCCCCeEEEEeCC---CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEE
Q 018322 221 PLVKFGGHKD--EGYAIDWNPITTGRLVTGDCN---SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC 295 (358)
Q Consensus 221 ~~~~~~~h~~--~v~~l~~s~~~~~~l~sgs~d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~ 295 (358)
++..+..|.. .+..|.|+|++..+|++++.| -.|.+||+|...... +.+.+|...|.++.|++.+..+++||
T Consensus 196 pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~---k~~~~H~~GilslsWc~~D~~lllSs 272 (1049)
T KOG0307|consen 196 PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL---KILEGHQRGILSLSWCPQDPRLLLSS 272 (1049)
T ss_pred cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch---hhhcccccceeeeccCCCCchhhhcc
Confidence 6666666654 578999999988788888765 489999998755443 77889999999999999997799999
Q ss_pred ECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 296 SVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 296 s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
+.|+.|.+|+..++ ..+..+...+.++..+.|+|..+.+|+.++.||.|.|+.+......
T Consensus 273 gkD~~ii~wN~~tg-Evl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~ 332 (1049)
T KOG0307|consen 273 GKDNRIICWNPNTG-EVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTD 332 (1049)
T ss_pred cCCCCeeEecCCCc-eEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCcc
Confidence 99999999999995 5777787788899999999999889999999999999999877643
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-17 Score=152.48 Aligned_cols=171 Identities=18% Similarity=0.287 Sum_probs=138.8
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
....|+.+.|.|..+..||.+++||.|+||.+......-. ...|...+.+|...|++|.|+|....
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~--------------~~tPe~~lt~h~eKI~slRfHPLAad 691 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN--------------EMTPEKILTIHGEKITSLRFHPLAAD 691 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc--------------cCCcceeeecccceEEEEEecchhhh
Confidence 3567899999999989999999999999999976321110 25677889999999999999999887
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC-CCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-NAD 322 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-~~~ 322 (358)
.|++++.|.+|+|||+++... ...+.+|++.|.+++|||+|+ .+|+.+.||+|++|..|+..+++..-.+- +..
T Consensus 692 vLa~asyd~Ti~lWDl~~~~~----~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR 766 (1012)
T KOG1445|consen 692 VLAVASYDSTIELWDLANAKL----YSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTR 766 (1012)
T ss_pred Hhhhhhccceeeeeehhhhhh----hheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCc
Confidence 999999999999999988433 367899999999999999999 99999999999999999977666554321 233
Q ss_pred eEEEEEeCCCCcEEEEEeCC----CCEEEEeCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDD----GTFSIHDLRLLK 354 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~D----g~i~iwDlr~~~ 354 (358)
--.|.|.-+| ++++..+.| .+|.+||..+..
T Consensus 767 gARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 767 GARILWACDG-RIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred ceeEEEEecC-cEEEEecccccchhhhhhhhhhhcc
Confidence 4567899899 665555544 578888887665
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-16 Score=136.79 Aligned_cols=174 Identities=20% Similarity=0.333 Sum_probs=129.8
Q ss_pred CeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE---cCCCCC
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF---GGHKDE 231 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~ 231 (358)
..+.....+|-+.||.|++.|..+++++++|.|..|++|++++ ..++..| .||.++
T Consensus 125 ~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~---------------------~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 125 GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT---------------------DVCVAVFGGVEGHRDE 183 (385)
T ss_pred hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC---------------------CeEEEEecccccccCc
Confidence 3455677899999999999999999999999999999999998 4666665 469999
Q ss_pred eEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc------------------ccCCCcc------ccCCCcEE-------
Q 018322 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW------------------NVDPNPF------IGHSASVE------- 280 (358)
Q Consensus 232 v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~------------------~~~~~~~------~~h~~~V~------- 280 (358)
|.+++|++++. +|+||+.|.+|.+|++....-+ ......+ ..|...|-
T Consensus 184 VLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd 262 (385)
T KOG1034|consen 184 VLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD 262 (385)
T ss_pred EEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh
Confidence 99999999999 9999999999999999832100 0000000 01211111
Q ss_pred -------------------------------------------------EEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 281 -------------------------------------------------DLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 281 -------------------------------------------------~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
-.+|.|-.. +||.|...|.|.+||++....
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEEECCCCCC
Confidence 122334444 788999999999999998443
Q ss_pred -eeEEE--ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 312 -ALTSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 312 -~~~~~--~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
...++ ......|...+|+.++ .+|+...+|++|.-||-.+
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred ccCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEeec
Confidence 22222 3345679999999999 7888888999999999653
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=143.39 Aligned_cols=186 Identities=14% Similarity=0.176 Sum_probs=131.4
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccc----ccc-------cCC--CCCC-----C
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESE----TIV-------GQG--APQV-----S 217 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~----~~~-------~~~--~~~~-----~ 217 (358)
.+..++-+|++.|+++.|.... ..+++|+.|.+|++||+........... ... ..+ ..+. .
T Consensus 252 r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 252 RLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred hhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEecc
Confidence 3446677899999999998877 4499999999999999987322110000 000 000 0000 2
Q ss_pred CCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCC-CccccCCCcEEEEEECCCCCCEEEEEE
Q 018322 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP-NPFIGHSASVEDLQWSPTEPDVFASCS 296 (358)
Q Consensus 218 ~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~-~~~~~h~~~V~~v~~sp~~~~~las~s 296 (358)
...+......+. .|++|+.++++. .|++++.|.++.+.|+++........ ..+. -....+.++|||++. ++|+||
T Consensus 331 s~~~~~sv~~gg-~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~eI~~~~sA~g~k-~asDwtrvvfSpd~~-YvaAGS 406 (459)
T KOG0288|consen 331 SADKTRSVPLGG-RVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK-CASDWTRVVFSPDGS-YVAAGS 406 (459)
T ss_pred CCceeeEeecCc-ceeeEeeccCCe-EEeeecCCCceeeeecccccEEEEeeccccc-cccccceeEECCCCc-eeeecc
Confidence 233444444444 799999999998 88899999999999998854321100 0011 123488999999999 999999
Q ss_pred CCCcEEEEECCCCCCeeEEEecCCC--CeEEEEEeCCCCcEEEEEeCCCCEEEE
Q 018322 297 VDGHIAIWDTRVGKSALTSFKAHNA--DVNVISWNRLASCLLASGSDDGTFSIH 348 (358)
Q Consensus 297 ~Dg~I~iwD~r~~~~~~~~~~~h~~--~V~~i~~~p~~~~~lasgs~Dg~i~iw 348 (358)
.||.|+||++.++ ++...+....+ .|++++|+|.| ..|++++.++.+.+|
T Consensus 407 ~dgsv~iW~v~tg-KlE~~l~~s~s~~aI~s~~W~~sG-~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 407 ADGSVYIWSVFTG-KLEKVLSLSTSNAAITSLSWNPSG-SGLLSADKQKAVTLW 458 (459)
T ss_pred CCCcEEEEEccCc-eEEEEeccCCCCcceEEEEEcCCC-chhhcccCCcceEec
Confidence 9999999999985 45555533332 69999999999 889999999999999
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.3e-17 Score=138.79 Aligned_cols=123 Identities=24% Similarity=0.383 Sum_probs=105.8
Q ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
-.+.|.+|+|||...++|+.||.||+|++|++...+... .+....|.++|.+++|+.++. .+++|+.|+.+++||+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~--~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV--PKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLA 102 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCccc--chhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEcc
Confidence 456899999999766688899999999999998754433 356677999999999999997 99999999999999999
Q ss_pred CCCCeeEEEecCCCCeEEEEEeCCC-CcEEEEEeCCCCEEEEeCCCCCC
Q 018322 308 VGKSALTSFKAHNADVNVISWNRLA-SCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~~p~~-~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
++ .+..+..|.++|.++.|-+.. ..+|+|||-|.+|+.||+|+..+
T Consensus 103 S~--Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 103 SG--QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP 149 (347)
T ss_pred CC--CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence 85 567788999999999998765 14899999999999999997653
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-17 Score=152.57 Aligned_cols=166 Identities=26% Similarity=0.389 Sum_probs=125.3
Q ss_pred EEEc--CCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEE
Q 018322 171 IRAM--TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (358)
Q Consensus 171 i~~~--p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 248 (358)
.+|+ |...++||.+.++|.|.++|.....-.. ....+..+..|...|+.+.|-| +..+|+++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~---------------ee~~lk~~~aH~nAifDl~wap-ge~~lVsa 118 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL---------------EERQLKKPLAHKNAIFDLKWAP-GESLLVSA 118 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcch---------------hhhhhcccccccceeEeeccCC-CceeEEEc
Confidence 3444 3346899999999999999988732221 1223455678999999999999 54499999
Q ss_pred eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-----------------
Q 018322 249 DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS----------------- 311 (358)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~----------------- 311 (358)
+.|.+|++||+....... ...+.||+..|.+++|+|..+.+|++|+.||.|.|||+|....
T Consensus 119 sGDsT~r~Wdvk~s~l~G--~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ 196 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVG--GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA 196 (720)
T ss_pred cCCceeeeeeeccceeec--ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC
Confidence 999999999998743322 2358899999999999999999999999999999999986320
Q ss_pred ---------eeEEEecCCCCeEE---EEEeCCCCcEEEEEeC-CCCEEEEeCCCCCC
Q 018322 312 ---------ALTSFKAHNADVNV---ISWNRLASCLLASGSD-DGTFSIHDLRLLKV 355 (358)
Q Consensus 312 ---------~~~~~~~h~~~V~~---i~~~p~~~~~lasgs~-Dg~i~iwDlr~~~~ 355 (358)
.+....+|...|.+ +.+..+. ..|||+|. |+.|+|||||+...
T Consensus 197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred CCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeeccccc
Confidence 01122445555544 4445566 68888877 99999999998754
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=149.91 Aligned_cols=158 Identities=14% Similarity=0.221 Sum_probs=133.9
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
...+.+|+..|+.+.+-|.+ .++|||.|.+|++|.-. ..+.+|.||++-|.+|+.
T Consensus 133 ~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~-----------------------~~l~tf~gHtD~VRgL~v 187 (745)
T KOG0301|consen 133 VYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG-----------------------TLLKTFSGHTDCVRGLAV 187 (745)
T ss_pred hcccCCcchheeeeeecCCC--cEEeccCcceeeeccCC-----------------------chhhhhccchhheeeeEE
Confidence 34578999999999999987 78999999999999853 556789999999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
-+.+ .|+||++||.|++|++.. .. +..+.+|+.-|.+++...++. ++++|+.|++++||+.. .+...+.
T Consensus 188 l~~~--~flScsNDg~Ir~w~~~g-e~----l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~---e~~q~I~ 256 (745)
T KOG0301|consen 188 LDDS--HFLSCSNDGSIRLWDLDG-EV----LLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD---ECVQVIT 256 (745)
T ss_pred ecCC--CeEeecCCceEEEEeccC-ce----eeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC---ceEEEEe
Confidence 9876 599999999999999932 32 367889999999999766666 99999999999999986 4566665
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.-...|+++.+-++| -|++|++||.|+||-.+.-
T Consensus 257 lPttsiWsa~~L~Ng--DIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 257 LPTTSIWSAKVLLNG--DIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred cCccceEEEEEeeCC--CEEEeccCceEEEEEeccc
Confidence 455579999988888 5888999999999987754
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-16 Score=143.74 Aligned_cols=179 Identities=21% Similarity=0.333 Sum_probs=140.8
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
..++.+|.|+|.|+.+.+.+ ..+.+|+.||+|+.|++.......+..+ .......+.||++.++.|++
T Consensus 337 i~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~d-----------p~vl~~~l~Ghtdavw~l~~ 404 (577)
T KOG0642|consen 337 ILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSYD-----------PSVLSGTLLGHTDAVWLLAL 404 (577)
T ss_pred eEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCcccccC-----------cchhccceeccccceeeeee
Confidence 35677999999999999988 7999999999999999874221111111 12334568899999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccC----------------------------------------CCcc-----
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVD----------------------------------------PNPF----- 272 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~----------------------------------------~~~~----- 272 (358)
|+... +|++++.||++++|.......+... ...+
T Consensus 405 s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~ 483 (577)
T KOG0642|consen 405 SSTKD-RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS 483 (577)
T ss_pred ccccc-ceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence 99988 9999999999999998653220000 0000
Q ss_pred c--cCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 273 I--GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 273 ~--~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
. .....++-|.++|... +.+++..|+.|+++|..++ .+++...+|...++++++.|+| .+|++|+.||.+++|.+
T Consensus 484 ~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~-~~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 484 PGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTG-KILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKL 560 (577)
T ss_pred CcccccCccceEEecCCCC-eeEecccCCceeccccccc-ccchheeeccceecceeecCCC-ceEEeecCCceeehhhc
Confidence 0 0113466788999997 9999999999999999985 5888889999999999999999 89999999999999988
Q ss_pred CC
Q 018322 351 RL 352 (358)
Q Consensus 351 r~ 352 (358)
..
T Consensus 561 d~ 562 (577)
T KOG0642|consen 561 DV 562 (577)
T ss_pred cc
Confidence 53
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.9e-16 Score=135.44 Aligned_cols=159 Identities=13% Similarity=0.152 Sum_probs=126.0
Q ss_pred eeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEE
Q 018322 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 247 (358)
.+|++|++-| .+||+|..+|.|.|||+.+ ..+...+.+|..+|.+|+||++|. .|+|
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T---------------------~~iar~lsaH~~pi~sl~WS~dgr-~Llt 82 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDT---------------------FRIARMLSAHVRPITSLCWSRDGR-KLLT 82 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccc---------------------cchhhhhhccccceeEEEecCCCC-Eeee
Confidence 8999999999 8999999999999999988 456678899999999999999999 9999
Q ss_pred EeCCCcEEEEecCCCCCcccC-----CCccccCC-------------------------------------CcEEEEEEC
Q 018322 248 GDCNSCIYLWEPASDATWNVD-----PNPFIGHS-------------------------------------ASVEDLQWS 285 (358)
Q Consensus 248 gs~dg~I~lwd~~~~~~~~~~-----~~~~~~h~-------------------------------------~~V~~v~~s 285 (358)
+|.|..|.+||+..+...... ....+-|. ..-.+..|.
T Consensus 83 sS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred ecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccccc
Confidence 999999999999885421000 00000000 000112356
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC-CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN-ADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~-~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+.|. ++++|...|.+.++|..+. .++..++... ..|..|.++..| .+|+.-+.|+.|+.|+++.
T Consensus 163 r~g~-yIitGtsKGkllv~~a~t~-e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 163 RRGK-YIITGTSKGKLLVYDAETL-ECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISD 227 (405)
T ss_pred CCCC-EEEEecCcceEEEEecchh-eeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhh
Confidence 6666 8999999999999999884 5777776555 789999999999 8899999999999999873
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-16 Score=134.85 Aligned_cols=216 Identities=19% Similarity=0.276 Sum_probs=165.6
Q ss_pred CceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCC
Q 018322 47 GEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKP 126 (358)
Q Consensus 47 ~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~ 126 (358)
..+|-+.=.+||.+-.+.. +.|++|-||+ -+|.+|- .+.|+|++.+.. -++.
T Consensus 142 tG~lraSy~~ydh~de~ta---AhsL~Fs~DG-----------eqlfaGy------krcirvFdt~Rp---Gr~c----- 193 (406)
T KOG2919|consen 142 TGKLRASYRAYDHQDEYTA---AHSLQFSPDG-----------EQLFAGY------KRCIRVFDTSRP---GRDC----- 193 (406)
T ss_pred ccccccchhhhhhHHhhhh---heeEEecCCC-----------CeEeecc------cceEEEeeccCC---CCCC-----
Confidence 4466666678877766543 4688898986 3666664 568999977532 2211
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccc
Q 018322 127 SNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESE 206 (358)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~ 206 (358)
+ .-+.+..-.++..|.|.|++|+|..+..+|.|+.-.++-||.-..
T Consensus 194 ------------------~-------vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--------- 239 (406)
T KOG2919|consen 194 ------------------P-------VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--------- 239 (406)
T ss_pred ------------------c-------chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC---------
Confidence 0 023333335677899999999999988999999998988888766
Q ss_pred ccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeC-CCcEEEEecCCCCCcccCCCccccCCC-cEEEE--
Q 018322 207 TIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSA-SVEDL-- 282 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~-~V~~v-- 282 (358)
..|++.+.+|.+.|+.|+|+++|+ .|.+|+. +-.|..||+|.....+ ..+..|.. .=..|
T Consensus 240 ------------~~pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~pv---~~L~rhv~~TNQRI~F 303 (406)
T KOG2919|consen 240 ------------RRPLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSRDPV---YALERHVGDTNQRILF 303 (406)
T ss_pred ------------CCceeeecccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhccchh---hhhhhhccCccceEEE
Confidence 688999999999999999999998 8888874 6799999999865544 44555544 22233
Q ss_pred EECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCC
Q 018322 283 QWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDD 342 (358)
Q Consensus 283 ~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~D 342 (358)
...|.++ +||+|+.||.|++||+......+..+..|...||.++++|-- .++||++..
T Consensus 304 Dld~~~~-~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m-pilatssGq 361 (406)
T KOG2919|consen 304 DLDPKGE-ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM-PILATSSGQ 361 (406)
T ss_pred ecCCCCc-eeeccCCCccEEEEecCCCCCcccccccccccccceecCccc-ceeeeccCc
Confidence 4468888 999999999999999998656777788899999999999997 889988754
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-16 Score=146.42 Aligned_cols=174 Identities=17% Similarity=0.290 Sum_probs=127.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc--EEEcCCCCCeEEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL--VKFGGHKDEGYAID 236 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~ 236 (358)
.....|.+.|..+.|.| +..+|++.+.|.++++||+.. ...+ ..+.||...+-+++
T Consensus 94 k~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~---------------------s~l~G~~~~~GH~~SvkS~c 151 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT---------------------SRLVGGRLNLGHTGSVKSEC 151 (720)
T ss_pred cccccccceeEeeccCC-CceeEEEccCCceeeeeeecc---------------------ceeecceeecccccccchhh
Confidence 34567999999999999 668999999999999999987 2222 24789999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCc-------------c---cCC-------CccccCCCcEEE---EEECCCCCC
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATW-------------N---VDP-------NPFIGHSASVED---LQWSPTEPD 290 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~-------------~---~~~-------~~~~~h~~~V~~---v~~sp~~~~ 290 (358)
|.|.++..|++|+.||.|.|||++-.+.- . ... .....+...|.+ +-+..++.
T Consensus 152 f~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~- 230 (720)
T KOG0321|consen 152 FMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES- 230 (720)
T ss_pred hccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-
Confidence 99999989999999999999999864310 0 000 111123334444 44445555
Q ss_pred EEEEEEC-CCcEEEEECCCCCC-----e--eEEEecC---CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 291 VFASCSV-DGHIAIWDTRVGKS-----A--LTSFKAH---NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 291 ~las~s~-Dg~I~iwD~r~~~~-----~--~~~~~~h---~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
.||+++. |+.|+|||+|.... + ...+..| ...+.++.....|.+++|+|. |+.|++|+++.....
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~s 306 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSIS 306 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcC
Confidence 7888887 99999999997421 1 1222233 335777888888866777765 999999999987653
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=142.14 Aligned_cols=184 Identities=14% Similarity=0.232 Sum_probs=146.0
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC-CCCCe
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEG 232 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v 232 (358)
.|..+.-+.+|.|+||.|.|+..+ .+||+|++|..+++|.+....... ..+|+..... |...|
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k---------------~~KPI~~~~~~H~SNI 108 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRK---------------TPKPIGVMEHPHRSNI 108 (609)
T ss_pred cchhhhhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhc---------------CCCCceeccCccccce
Confidence 445555667899999999999987 899999999999999997632221 2466665544 45799
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (358)
+||+|...+. +|.+|..+++|.+.|+.+..... ...-....+.|..+..+|..+ .|++.+.+|.|.+||.|....+
T Consensus 109 F~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qsi~--V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 109 FSLEFDLENR-FLYSGERWGTVIKHDIETKQSIY--VANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred EEEEEccCCe-eEecCCCcceeEeeecccceeee--eecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCC
Confidence 9999999887 99999999999999998754422 122223346899999999965 9999999999999999985433
Q ss_pred eEE--EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 313 LTS--FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 313 ~~~--~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
+.. .........++-|+|-.+.+|++.+..+-+.+||+|+.+.+|
T Consensus 185 ~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~ 231 (609)
T KOG4227|consen 185 ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPV 231 (609)
T ss_pred CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchH
Confidence 322 233455678899999999999999999999999999988775
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=140.38 Aligned_cols=167 Identities=16% Similarity=0.185 Sum_probs=136.2
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+..|..+|+-+.|+++| ++|||++.|.+.-||.+.... ..+...++.+|..+|..+.||
T Consensus 218 qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~------------------~~kl~~tlvgh~~~V~yi~wS 278 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDV------------------HFKLKKTLVGHSQPVSYIMWS 278 (519)
T ss_pred hhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCc------------------ceeeeeeeecccCceEEEEEC
Confidence 3456799999999999999 899999999999999987631 134567889999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|+.. +|++|+.+..+.+||..++.... .--.+|..++.+++|.|++. .|++|+.|++|..||+... ......+
T Consensus 279 PDdr-yLlaCg~~e~~~lwDv~tgd~~~---~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn--~~~~W~g 351 (519)
T KOG0293|consen 279 PDDR-YLLACGFDEVLSLWDVDTGDLRH---LYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGN--ILGNWEG 351 (519)
T ss_pred CCCC-eEEecCchHheeeccCCcchhhh---hcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcc--hhhcccc
Confidence 9998 99999999999999998854322 11123568899999999998 8999999999999999752 2223322
Q ss_pred C-CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 319 H-NADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 319 h-~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
- ...|.+++..++| ..+++.+.|..|++++..+
T Consensus 352 vr~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 352 VRDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred cccceeEEEEEcCCC-cEEEEEecccceeeechhh
Confidence 2 2458999999999 7777777999999998754
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=148.24 Aligned_cols=169 Identities=20% Similarity=0.290 Sum_probs=133.5
Q ss_pred CCceeEEEEcCCCCcEEEE--EeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc--CCCCCeEEEEeCCC
Q 018322 165 QGCVNRIRAMTQNPHICAS--WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAIDWNPI 240 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat--~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~s~~ 240 (358)
.++.+.++.+. ..+|. .+.-|.|-||+++.... -|-..+. .....|+.+.|.|.
T Consensus 581 PgEsnGfcan~---~rvAVPL~g~gG~iai~el~~PGr-------------------LPDgv~p~l~Ngt~vtDl~WdPF 638 (1012)
T KOG1445|consen 581 PGESNGFCANN---KRVAVPLAGSGGVIAIYELNEPGR-------------------LPDGVMPGLFNGTLVTDLHWDPF 638 (1012)
T ss_pred CCccCceeecc---ceEEEEecCCCceEEEEEcCCCCC-------------------CCcccccccccCceeeecccCCC
Confidence 35555554443 23333 44568999999987432 1212222 13458999999999
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCc---ccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATW---NVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~---~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
...+||+++.||.|+||.+...+.. ......+.+|...|+++.|+|-..++|++++.|.+|+|||+++. .....+.
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~-~~~~~l~ 717 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA-KLYSRLV 717 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh-hhhheec
Confidence 8879999999999999999775432 22345678899999999999998889999999999999999985 4556789
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
+|...|..++|+|+| +.+||.+.||+|++|.-|+..+|+
T Consensus 718 gHtdqIf~~AWSpdG-r~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 718 GHTDQIFGIAWSPDG-RRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred cCcCceeEEEECCCC-cceeeeecCceEEEeCCCCCCCcc
Confidence 999999999999999 999999999999999999988775
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-16 Score=144.14 Aligned_cols=156 Identities=19% Similarity=0.291 Sum_probs=133.5
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.-.++.++.+|+. +++.++..||.|.|||+.+ ...+..|.||.+.+.||+.+++|. .
T Consensus 509 apaCyALa~spDa-kvcFsccsdGnI~vwDLhn---------------------q~~VrqfqGhtDGascIdis~dGt-k 565 (705)
T KOG0639|consen 509 APACYALAISPDA-KVCFSCCSDGNIAVWDLHN---------------------QTLVRQFQGHTDGASCIDISKDGT-K 565 (705)
T ss_pred chhhhhhhcCCcc-ceeeeeccCCcEEEEEccc---------------------ceeeecccCCCCCceeEEecCCCc-e
Confidence 3567788999998 7888889999999999988 567888999999999999999998 9
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeE
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (358)
|.||+-|.+|+.||++++.+.. -...++.|.++..+|++. .+|.|-..+.+-|-..+.+ ....+..|.+.|.
T Consensus 566 lWTGGlDntvRcWDlregrqlq-----qhdF~SQIfSLg~cP~~d-WlavGMens~vevlh~skp--~kyqlhlheScVL 637 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQ-----QHDFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKP--EKYQLHLHESCVL 637 (705)
T ss_pred eecCCCccceeehhhhhhhhhh-----hhhhhhhheecccCCCcc-ceeeecccCcEEEEecCCc--cceeecccccEEE
Confidence 9999999999999999853321 112357899999999999 9999999999998887753 3455678999999
Q ss_pred EEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 325 VISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
++.|.+.| .++++.+.|..+..|.+--
T Consensus 638 SlKFa~cG-kwfvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 638 SLKFAYCG-KWFVSTGKDNLLNAWRTPY 664 (705)
T ss_pred EEEecccC-ceeeecCchhhhhhccCcc
Confidence 99999999 9999999999999997643
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-14 Score=124.97 Aligned_cols=188 Identities=15% Similarity=0.279 Sum_probs=137.8
Q ss_pred CCeEEEEEecCCCceeEEEEcC-CCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCe
Q 018322 154 TPILQLRKVAHQGCVNRIRAMT-QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p-~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (358)
+=.+......|.+.|.+|.|.+ .-.+++|+++.|++|.||.=... ..+.. ........++......|
T Consensus 48 ~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~--~~~~~----------~~~Wv~~ttl~DsrssV 115 (361)
T KOG2445|consen 48 TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK--SEEAH----------GRRWVRRTTLVDSRSSV 115 (361)
T ss_pred ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccc--ccccc----------cceeEEEEEeecCCcce
Confidence 3445567788999999999965 33589999999999999986421 11100 01345566777888899
Q ss_pred EEEEeCCCCCC-eEEEEeCCCcEEEEecCCCCC---ccc------CCCccccCCCcEEEEEECCCC--CCEEEEEECC--
Q 018322 233 YAIDWNPITTG-RLVTGDCNSCIYLWEPASDAT---WNV------DPNPFIGHSASVEDLQWSPTE--PDVFASCSVD-- 298 (358)
Q Consensus 233 ~~l~~s~~~~~-~l~sgs~dg~I~lwd~~~~~~---~~~------~~~~~~~h~~~V~~v~~sp~~--~~~las~s~D-- 298 (358)
+.+.|.|...| .||+++.||.++||+.-.... |.. ...+...+..+..||.|+|.. ..+||.|+.+
T Consensus 116 ~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a 195 (361)
T KOG2445|consen 116 TDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA 195 (361)
T ss_pred eEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCC
Confidence 99999998666 789999999999998765422 211 011223467889999999853 2378888776
Q ss_pred ---CcEEEEECCCCCC---eeEEEecCCCCeEEEEEeCCCC---cEEEEEeCCCCEEEEeCCCCC
Q 018322 299 ---GHIAIWDTRVGKS---ALTSFKAHNADVNVISWNRLAS---CLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 299 ---g~I~iwD~r~~~~---~~~~~~~h~~~V~~i~~~p~~~---~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+.+.||....... .+..+..|..+|+.|+|.|+-. ++||+++.|| |+||.++...
T Consensus 196 ~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 196 PHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred ccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeecc
Confidence 5899997765432 4455678999999999999742 5799999999 9999998644
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-17 Score=136.00 Aligned_cols=167 Identities=19% Similarity=0.287 Sum_probs=140.7
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
-..-++.+|.|.|+....+.+. ...|+++.|-+.+|||.-+ +..+..| .|+.-|.++
T Consensus 50 dwigtfeghkgavw~~~l~~na-~~aasaaadftakvw~a~t---------------------gdelhsf-~hkhivk~~ 106 (334)
T KOG0278|consen 50 DWIGTFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVT---------------------GDELHSF-EHKHIVKAV 106 (334)
T ss_pred CcEEeeeccCcceeeeecCchh-hhhhhhcccchhhhhhhhh---------------------hhhhhhh-hhhheeeeE
Confidence 3456788999999999998877 7899999999999999876 4555555 577889999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
+|+.+.. +|++|+.+..+++||++..... +..+.+|++.|..+-|+.... .|++.+.|++||+||.|++ ..+.+
T Consensus 107 af~~ds~-~lltgg~ekllrvfdln~p~Ap---p~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTg-t~v~s 180 (334)
T KOG0278|consen 107 AFSQDSN-YLLTGGQEKLLRVFDLNRPKAP---PKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTG-TEVQS 180 (334)
T ss_pred Eecccch-hhhccchHHHhhhhhccCCCCC---chhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccC-cEEEE
Confidence 9999998 9999999999999999775443 478899999999999998777 8888899999999999996 45666
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+. .+..|+++..+++| .+|.++ .-+.|.+||..++.
T Consensus 181 L~-~~s~VtSlEvs~dG-~ilTia-~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 181 LE-FNSPVTSLEVSQDG-RILTIA-YGSSVKFWDAKSFG 216 (334)
T ss_pred Ee-cCCCCcceeeccCC-CEEEEe-cCceeEEecccccc
Confidence 64 45679999999999 666554 56789999998875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-15 Score=135.39 Aligned_cols=194 Identities=15% Similarity=0.178 Sum_probs=137.2
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc----cccccc-----cccCCCCCC-------------
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNA----LAESET-----IVGQGAPQV------------- 216 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~----~~~~~~-----~~~~~~~~~------------- 216 (358)
....+|.++|++|.|+|.++..+.+.|.||+|++-|+...... .+.... .........
T Consensus 228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD 307 (498)
T KOG4328|consen 228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVID 307 (498)
T ss_pred EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEE
Confidence 4567899999999999999888999999999999999763211 100000 000000000
Q ss_pred --CCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEE
Q 018322 217 --SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (358)
Q Consensus 217 --~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (358)
........+.-|...|.+|+++|..+.+||||+.|++.+|||++.......+......|...|.+..|||.+.+ |++
T Consensus 308 ~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~T 386 (498)
T KOG4328|consen 308 LRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLT 386 (498)
T ss_pred eecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEe
Confidence 11222334456777999999999998899999999999999998754432112334569999999999999995 999
Q ss_pred EECCCcEEEEECC---CCCCeeEEEe---cCCCCe--EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 295 CSVDGHIAIWDTR---VGKSALTSFK---AHNADV--NVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 295 ~s~Dg~I~iwD~r---~~~~~~~~~~---~h~~~V--~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
-+.|..|||||.. ....+...+. .+...+ ....|.|+. .+|++|-.-..|-|+|-..++
T Consensus 387 T~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~-~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 387 TCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY-NLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred eccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc-cEEEEeccCcceeEEcCCCCE
Confidence 9999999999984 2122333331 122222 345899988 899999998889999977655
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-15 Score=130.35 Aligned_cols=158 Identities=18% Similarity=0.227 Sum_probs=125.7
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
....|.+++|+|.+.. |+.++-||.+++|++... . +...-.|..++.+.+|.+..
T Consensus 12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~---------------------~-l~~~~~~~~plL~c~F~d~~-- 66 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPAN---------------------S-LKLKFKHGAPLLDCAFADES-- 66 (323)
T ss_pred ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccch---------------------h-hhhheecCCceeeeeccCCc--
Confidence 3578999999998854 445579999999999872 2 22233578899999999854
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.+++|+.||.|+++|++++.. ..+..|...|.+|..++-.. .+++||.|++|++||.|. ..++..+.. ...|
T Consensus 67 ~~~~G~~dg~vr~~Dln~~~~-----~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~-~~~~~~~d~-~kkV 138 (323)
T KOG1036|consen 67 TIVTGGLDGQVRRYDLNTGNE-----DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRN-KVVVGTFDQ-GKKV 138 (323)
T ss_pred eEEEeccCceEEEEEecCCcc-----eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccc-ccccccccc-CceE
Confidence 799999999999999987543 34566999999999998766 999999999999999997 334444433 3378
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
.++..+. ..|+.|+.+..+.+||||+...+.
T Consensus 139 y~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 139 YCMDVSG---NRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred EEEeccC---CEEEEeecCceEEEEEcccccchh
Confidence 8877763 678889999999999999987653
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-15 Score=141.75 Aligned_cols=188 Identities=22% Similarity=0.301 Sum_probs=137.3
Q ss_pred EEEecCCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccc---c--------------ccCCCC------
Q 018322 159 LRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESET---I--------------VGQGAP------ 214 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~---~--------------~~~~~~------ 214 (358)
.....|..+|+.+.|.... +.-|++++.||.|+.|++............ . ..+...
T Consensus 285 ~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi 364 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI 364 (555)
T ss_pred cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence 4556799999999997644 244778888999999988652221100000 0 000000
Q ss_pred --------------CC-CCC----CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccC
Q 018322 215 --------------QV-SNQ----SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275 (358)
Q Consensus 215 --------------~~-~~~----~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h 275 (358)
.. ... +++..+..|.+.|+++.++|.....|++++ |.+++||.-.....+ ...+..+
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~P---l~~~~~~ 440 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASP---LLSLDSS 440 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCc---chhhhhc
Confidence 00 111 234456678889999999999985666666 999999987522222 3456667
Q ss_pred CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
...|++++|||..+.+|+++..||.|.|||++... .|+.+...+....+.+.|++.| .+|+.|...|++++|++.
T Consensus 441 ~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g-~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 441 PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNG-KLLAVGDANGTTHILKLS 516 (555)
T ss_pred cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCC-cEEEEecCCCcEEEEEcC
Confidence 78899999999999999999999999999998632 3777776677788999999999 999999999999999995
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-15 Score=131.66 Aligned_cols=97 Identities=23% Similarity=0.423 Sum_probs=74.2
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+-.|...||+|||+|.| .++|+|+++|.|.+|-.... +.. .... ..............+.+|..+++.|+|+
T Consensus 59 s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~-~~~-~~d~---e~~~~ke~w~v~k~lr~h~~diydL~Ws 132 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDV-RIF-DADT---EADLNKEKWVVKKVLRGHRDDIYDLAWS 132 (434)
T ss_pred ecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCc-CCc-cccc---hhhhCccceEEEEEecccccchhhhhcc
Confidence 4667799999999999999 79999999999999987631 000 0000 0000001234456788999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCC
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASD 262 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~ 262 (358)
|++. ++++|+.|..+++||+..+
T Consensus 133 ~d~~-~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 133 PDSN-FLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred CCCc-eeeeeeccceEEEEEeccc
Confidence 9998 9999999999999999875
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-16 Score=137.78 Aligned_cols=171 Identities=20% Similarity=0.385 Sum_probs=139.6
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
...+|..+.|.+.....+|||+.|..|+||-+......... .....+..+..|...|+++.|+|.|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~------------~~V~y~s~Ls~H~~aVN~vRf~p~ge- 78 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD------------MKVEYLSSLSRHTRAVNVVRFSPDGE- 78 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc------------eeEEEeecccCCcceeEEEEEcCCcC-
Confidence 34789999999887569999999999999999773322110 01344567889999999999999998
Q ss_pred eEEEEeCCCcEEEEecCC-------------CCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 244 RLVTGDCNSCIYLWEPAS-------------DATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~-------------~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
+||||+.+|.|.+|-... ...|.+ .+.+.+|...|.+++|+|++. ++++++.|.++++||++.+
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v-~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G- 155 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVV-KKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAG- 155 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEE-EEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccc-
Confidence 999999999999998761 112332 234667999999999999998 9999999999999999996
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.....+..|...|+-++|.|.+ .++++-+.|...+++.+.
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAK 195 (434)
T ss_pred eeEeeccccccccceeecchhh-hhhhhhccCcccceeeee
Confidence 5677788999999999999999 899999998877776654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-15 Score=142.54 Aligned_cols=188 Identities=18% Similarity=0.169 Sum_probs=139.4
Q ss_pred EEEecCCCceeEEEEcCCC--CcEEEEEeCCCcEEEEeCCCCccc---ccccc-------cc--------ccCCCCCC--
Q 018322 159 LRKVAHQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNA---LAESE-------TI--------VGQGAPQV-- 216 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~---~~~~~-------~~--------~~~~~~~~-- 216 (358)
..+.+|..+|.|+.|+.-. ..+||+++.|.-|+|||+.....- ++.+. +. ...+..+.
T Consensus 495 ~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim 574 (1080)
T KOG1408|consen 495 CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM 574 (1080)
T ss_pred hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh
Confidence 4556899999999998532 579999999999999999763221 11110 00 00111111
Q ss_pred ----CCCCCcEEEcCC-----CCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC
Q 018322 217 ----SNQSPLVKFGGH-----KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT 287 (358)
Q Consensus 217 ----~~~~~~~~~~~h-----~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~ 287 (358)
........|..| ...+|.++..|... ++++++.|..|+||++.++ +.....+--.+|.+..-.|...|.
T Consensus 575 Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPS 652 (1080)
T KOG1408|consen 575 FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPS 652 (1080)
T ss_pred eehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEecccc-ceeeeecccccCCCceEEEEECCC
Confidence 000011112222 23688999999987 9999999999999999874 433222223447778888999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 288 EPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 288 ~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+- ++|+...|+++.++|.-++ .++.+..+|...|+.+.|.++. ..|++.+.||.|.||.+.
T Consensus 653 gi-Y~atScsdktl~~~Df~sg-EcvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 653 GI-YLATSCSDKTLCFVDFVSG-ECVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred cc-EEEEeecCCceEEEEeccc-hhhhhhcCcchheeeeeecccc-hhheeecCCceEEEEECc
Confidence 98 9999999999999999985 6999999999999999999999 899999999999999875
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=130.73 Aligned_cols=167 Identities=17% Similarity=0.334 Sum_probs=134.9
Q ss_pred EecCCCceeEEEEcCC----CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE--cCCCCCeEE
Q 018322 161 KVAHQGCVNRIRAMTQ----NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GGHKDEGYA 234 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~----~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~ 234 (358)
+..|..+|..+.|++. .+.++||.+. ..+.||....... ...++.+ ..|....+.
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~------------------ir~lq~y~D~d~~Esfyt 94 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGG------------------IRLLQSYADEDHDESFYT 94 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccc------------------eeeeeeccCCCCCcceEE
Confidence 4568899999999853 3678888776 4788998876320 1122222 136668889
Q ss_pred EEeCCCC---CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 235 IDWNPIT---TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 235 l~~s~~~---~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
++|+-+. .-+||.|+.-|.|+|.|+.+ ++. ...+.+|...|+.|.++|..++++++||.|.+||+|++++. .
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~---~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~-~ 169 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQC---SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD-V 169 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecch-hhh---ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC-e
Confidence 9997542 22899999999999999976 333 36788999999999999999999999999999999999984 5
Q ss_pred eeEEE---ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 312 ALTSF---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 312 ~~~~~---~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
++..+ .+|...|.++.|++++ .+|+|+|.|.+|++|++..
T Consensus 170 Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 170 CVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred EEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecCh
Confidence 77666 6799999999999999 8999999999999999984
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-15 Score=140.23 Aligned_cols=196 Identities=16% Similarity=0.182 Sum_probs=136.4
Q ss_pred CeEEEEEecCCCceeEEEEcCCC----------CcEEEEEeCCCcEEEEeCCCCccccc------ccccccc-CCCCCC-
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQN----------PHICASWADTGHVQVWDLRSHLNALA------ESETIVG-QGAPQV- 216 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~----------~~~lat~s~dg~V~iwd~~~~~~~~~------~~~~~~~-~~~~~~- 216 (358)
+-....+.-|...|+.|..-|-+ +..|.||+.|++|++|++....+..- ....... ......
T Consensus 359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 33346677899999999877722 35799999999999999976322110 0000000 000000
Q ss_pred --------CCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC--
Q 018322 217 --------SNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-- 286 (358)
Q Consensus 217 --------~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-- 286 (358)
.-.+.....-+....+.+|+.+|++. +||+|++-|+|++|++.+... ...+..|.+.|.|+.++.
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGDr~GnlrVy~Lq~l~~----~~~~eAHesEilcLeyS~p~ 513 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGDRGGNLRVYDLQELEY----TCFMEAHESEILCLEYSFPV 513 (1080)
T ss_pred hhhhccCCcccccchhhcCcccceEEEEECCCcc-eecccCccCceEEEEehhhhh----hhheecccceeEEEeecCch
Confidence 00111112223345789999999998 999999999999999976322 245678999999999984
Q ss_pred CCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCC----------------------------------
Q 018322 287 TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLA---------------------------------- 332 (358)
Q Consensus 287 ~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~---------------------------------- 332 (358)
.+..+||+++.|..|+|||+...-.++.++..|.+.|++|.|.-.|
T Consensus 514 ~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t 593 (1080)
T KOG1408|consen 514 LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT 593 (1080)
T ss_pred hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc
Confidence 2334899999999999999976555667777787777777775433
Q ss_pred --------------CcEEEEEeCCCCEEEEeCCCCCC
Q 018322 333 --------------SCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 333 --------------~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
..++++++.|..|+|||+.++++
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 25778888888888888887765
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-14 Score=130.67 Aligned_cols=183 Identities=20% Similarity=0.299 Sum_probs=135.0
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCC------C-----------C----C
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG------A-----------P----Q 215 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~------~-----------~----~ 215 (358)
+..+...|.+.|.++....+| .|.+|+.|..|..||-. .+.....+.....+ . . .
T Consensus 279 ~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~--y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G 354 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDN--YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG 354 (626)
T ss_pred EEeEeeecCCceEEEEEecCc--cEeecCccceEEecccc--ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence 334444999999999999998 45559999999999932 22221111111000 0 0 0
Q ss_pred CCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEE
Q 018322 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC 295 (358)
Q Consensus 216 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~ 295 (358)
...........+|..+.+.++-+|..+ +|++++.|+.++||+ ...-.|. ..-..++.++.|+|.+ ++|.|
T Consensus 355 t~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~-~~k~~wt------~~~~d~~~~~~fhpsg--~va~G 424 (626)
T KOG2106|consen 355 TLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN-DHKLEWT------KIIEDPAECADFHPSG--VVAVG 424 (626)
T ss_pred eecCCceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc-CCceeEE------EEecCceeEeeccCcc--eEEEe
Confidence 012233345578999999999999998 999999999999999 2222222 1135688999999999 79999
Q ss_pred ECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 296 SVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 296 s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
...|...+.|+.+ +.+.+++..+.++++++|+|+| .+||.|+.|+.|+||-+......
T Consensus 425 t~~G~w~V~d~e~--~~lv~~~~d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 425 TATGRWFVLDTET--QDLVTIHTDNEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred eccceEEEEeccc--ceeEEEEecCCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcE
Confidence 9999999999998 3455555558999999999999 99999999999999988765543
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-15 Score=139.36 Aligned_cols=181 Identities=17% Similarity=0.333 Sum_probs=142.3
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
+.+++..|...|..+.|.|.. -.|++++.||+|.+|++..... +......|+.+|.+|.++|.|++
T Consensus 286 ik~tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~-------------s~~~~~epi~tfraH~gPVl~v~ 351 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKK-------------SAEKDVEPILTFRAHEGPVLCVV 351 (577)
T ss_pred eeeeeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCC-------------ccccceeeeEEEecccCceEEEE
Confidence 445788899999999999988 4889999999999999944110 01113689999999999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCC------CCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASD------ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~------~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
..+.+. .+++|+.||+|+.|++... ....+....+.||+..|..+++|+... .|++|+.||++|+|......
T Consensus 352 v~~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 352 VPSNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred ecCCce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcC
Confidence 999998 9999999999999976521 122333567899999999999999887 89999999999999875421
Q ss_pred Ce-------------------------------------------eEEE-------ecCCCCeEEEEEeCCCCcEEEEEe
Q 018322 311 SA-------------------------------------------LTSF-------KAHNADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 311 ~~-------------------------------------------~~~~-------~~h~~~V~~i~~~p~~~~~lasgs 340 (358)
.+ +..+ ......++.+.++|.+ .+.+++.
T Consensus 430 ~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~h 508 (577)
T KOG0642|consen 430 PCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAH 508 (577)
T ss_pred ccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecc
Confidence 10 0000 0012357889999999 8999999
Q ss_pred CCCCEEEEeCCCCC
Q 018322 341 DDGTFSIHDLRLLK 354 (358)
Q Consensus 341 ~Dg~i~iwDlr~~~ 354 (358)
.|+.|+++|..+++
T Consensus 509 ed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGK 522 (577)
T ss_pred cCCceecccccccc
Confidence 99999999998775
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.1e-15 Score=141.09 Aligned_cols=175 Identities=22% Similarity=0.313 Sum_probs=137.0
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc-EEEcCCCCCeEEEEeCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL-VKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~s~~~ 241 (358)
.-...|.++.|+|..++++|.|..+|+|.+||+..+.... ..++ .....|..+++++.|....
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~----------------~s~ls~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP----------------PSGLSALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC----------------CcccccccccCCcCeEEEEEeccC
Confidence 3578999999999999999999999999999999853221 0111 2234688899999997654
Q ss_pred CC-eEEEEeCCCcEEEEecCCCCCc-----------------------------------------------------c-
Q 018322 242 TG-RLVTGDCNSCIYLWEPASDATW-----------------------------------------------------N- 266 (358)
Q Consensus 242 ~~-~l~sgs~dg~I~lwd~~~~~~~-----------------------------------------------------~- 266 (358)
.+ -|++++.||.|+.|+++.-... .
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~ 383 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPA 383 (555)
T ss_pred CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccc
Confidence 42 5899999999999987642100 0
Q ss_pred -----cCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC
Q 018322 267 -----VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 267 -----~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~ 341 (358)
.....+..|.++|+.+.++|.+..+|++++ |.+|+||.......|+..+..+...|++++|+|..+.+++++..
T Consensus 384 ~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~ 462 (555)
T KOG1587|consen 384 PEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDG 462 (555)
T ss_pred ccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcC
Confidence 001123357789999999999987888888 99999999874456888888888889999999999999999999
Q ss_pred CCCEEEEeCCCCC
Q 018322 342 DGTFSIHDLRLLK 354 (358)
Q Consensus 342 Dg~i~iwDlr~~~ 354 (358)
||.|.||||..-.
T Consensus 463 ~G~l~iWDLl~~~ 475 (555)
T KOG1587|consen 463 DGNLDIWDLLQDD 475 (555)
T ss_pred CCceehhhhhccc
Confidence 9999999998654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-14 Score=139.23 Aligned_cols=158 Identities=18% Similarity=0.279 Sum_probs=129.2
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
..|.++|+.++...-+ +++++++.+|.++.||+.. ..++..+. -..++.++..+...
T Consensus 490 ~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~---------------------k~l~~~l~-l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 490 PAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKK---------------------KVLKKSLR-LGSSITGIVYHRVS 546 (910)
T ss_pred ccccCceeEEEecCCC-ceEEEccCcceEEEEecCC---------------------cceeeeec-cCCCcceeeeeehh
Confidence 4799999999998887 7899999999999999987 23333332 23466677777766
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
. .++.+..|-.|+++|..+. +. .+.|.||+..|++++|||+|+ .+++++.|++||+||+.++ .++-.+ .-..
T Consensus 547 ~-l~a~~~ddf~I~vvD~~t~-kv---vR~f~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlpt~-~lID~~-~vd~ 618 (910)
T KOG1539|consen 547 D-LLAIALDDFSIRVVDVVTR-KV---VREFWGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLPTG-TLIDGL-LVDS 618 (910)
T ss_pred h-hhhhhcCceeEEEEEchhh-hh---hHHhhccccceeeeEeCCCCc-EEEEeecCCcEEEEeccCc-ceeeeE-ecCC
Confidence 5 8999999999999999763 22 478999999999999999999 9999999999999999985 344333 3466
Q ss_pred CeEEEEEeCCCCcEEEEEeCC-CCEEEEeCC
Q 018322 322 DVNVISWNRLASCLLASGSDD-GTFSIHDLR 351 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~D-g~i~iwDlr 351 (358)
++..++|+|+| .+|||...| .-|++|-=+
T Consensus 619 ~~~sls~SPng-D~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 619 PCTSLSFSPNG-DFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred cceeeEECCCC-CEEEEEEecCceEEEEEch
Confidence 78999999999 999999888 579999543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-14 Score=124.79 Aligned_cols=178 Identities=15% Similarity=0.177 Sum_probs=146.9
Q ss_pred CeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
......+..|...|++|.|+|.. +.|+||+.|..-++|...... ..+|...+..+....++
T Consensus 45 w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~------------------~WkptlvLlRiNrAAt~ 105 (361)
T KOG1523|consen 45 WEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGG------------------TWKPTLVLLRINRAATC 105 (361)
T ss_pred ceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCCCC------------------eeccceeEEEeccceee
Confidence 44556778899999999999998 688999999999999985311 46888888899999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC-----CC
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR-----VG 309 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r-----~~ 309 (358)
+.|+|.++ .||+|+....|.||-+.....|-+....-..+.+.|+++.|+|++- ++++|+.|+..|+|..- ..
T Consensus 106 V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs~D~k~rVfSayIK~Vdek 183 (361)
T KOG1523|consen 106 VKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGSTDGKCRVFSAYIKGVDEK 183 (361)
T ss_pred EeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccccCcceeEEEEeeeccccC
Confidence 99999998 9999999999999999877776544444556788999999999998 99999999999999542 10
Q ss_pred --C----------CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 310 --K----------SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 310 --~----------~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
. ..+..+....+.|..+.|+|.| ..|+-.+.|+.+.+-|.....
T Consensus 184 pap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 184 PAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEecCCCceEEeecCCCc
Confidence 0 1233344567889999999999 899999999999999987765
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.6e-14 Score=132.39 Aligned_cols=171 Identities=21% Similarity=0.289 Sum_probs=132.5
Q ss_pred CCeEEEEEecC-CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCe
Q 018322 154 TPILQLRKVAH-QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (358)
Q Consensus 154 ~~~~~~~~~~H-~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (358)
...++..+.++ .+.|..++|++.+ .|.+.+.+|.|.-||+.. .++...+....+.|
T Consensus 57 ~w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~---------------------lk~~~~~d~~gg~I 113 (691)
T KOG2048|consen 57 NWFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSITEWDLHT---------------------LKQKYNIDSNGGAI 113 (691)
T ss_pred CceeeEEEecCCCCceeeEEEccCC--eEEeecCCceEEEEeccc---------------------CceeEEecCCCcce
Confidence 44455555555 4799999999766 566778889999999987 67777888888899
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (358)
++++.+|.+. .++.|+.||.++.+++.. +. +...+.+...++.|.+|+|+|++. .+++|+.||.|++||...+..
T Consensus 114 Wsiai~p~~~-~l~IgcddGvl~~~s~~p-~~-I~~~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~Iriwd~~~~~t- 188 (691)
T KOG2048|consen 114 WSIAINPENT-ILAIGCDDGVLYDFSIGP-DK-ITYKRSLMRQKSRVLSLSWNPTGT-KIAGGSIDGVIRIWDVKSGQT- 188 (691)
T ss_pred eEEEeCCccc-eEEeecCCceEEEEecCC-ce-EEEEeecccccceEEEEEecCCcc-EEEecccCceEEEEEcCCCce-
Confidence 9999999998 999999999777777654 22 222344555679999999999997 899999999999999998643
Q ss_pred eEEE-------e-cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 313 LTSF-------K-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 313 ~~~~-------~-~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+... . ....-|+++.|-.++ .|++|..-|+|.+||...+.
T Consensus 189 ~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 189 LHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcc
Confidence 3211 1 123357788887666 89999999999999987653
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-15 Score=140.33 Aligned_cols=169 Identities=16% Similarity=0.267 Sum_probs=137.0
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCC-----cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTG-----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
.++.+|-.+|++++.+|.+ +++||+.... .|+||+... ...+..+.+|.-.|+
T Consensus 519 ~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~---------------------W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTAN---------------------WLQVQELEGHSLTVT 576 (764)
T ss_pred HHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccc---------------------hhhhheecccceEEE
Confidence 4568899999999999999 8999987653 489999887 566668899999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-Ce
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SA 312 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~ 312 (358)
.|+|||++. +|++.+.|.++.||.................|+..|.+..|+|++. .|||+|.|++|++|...... ..
T Consensus 577 ~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~ 654 (764)
T KOG1063|consen 577 RLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKY 654 (764)
T ss_pred EEEECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhh
Confidence 999999999 9999999999999998553322211233667999999999999998 79999999999999887641 12
Q ss_pred eE--EEecCCCCeEEEEEeCCC----CcEEEEEeCCCCEEEEeCC
Q 018322 313 LT--SFKAHNADVNVISWNRLA----SCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 313 ~~--~~~~h~~~V~~i~~~p~~----~~~lasgs~Dg~i~iwDlr 351 (358)
+. ....+...|+.++|.|-- ..+++.|-..|.|.+|...
T Consensus 655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 22 235688899999998743 1378888899999999854
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-15 Score=128.86 Aligned_cols=164 Identities=20% Similarity=0.305 Sum_probs=139.0
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-..+|+|.+|+++. ..+|.+-....|.||...... ...+..++..|...|++|+|+|..+
T Consensus 9 ~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~------------------~w~~~htls~Hd~~vtgvdWap~sn- 68 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGAD------------------LWEPAHTLSEHDKIVTGVDWAPKSN- 68 (361)
T ss_pred ccCceeeeeecCCC-ceEEeccCCceEEEEEecCCC------------------CceeceehhhhCcceeEEeecCCCC-
Confidence 35899999999999 789999999999999987621 2577888999999999999999998
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC---eeEEEecCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS---ALTSFKAHN 320 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~---~~~~~~~h~ 320 (358)
+|++|+.|..-++|....++.|... -.+..+...+++|.|+|.++ .||+||.-..|.||-+..... ..+.-+.+.
T Consensus 69 rIvtcs~drnayVw~~~~~~~Wkpt-lvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPir 146 (361)
T KOG1523|consen 69 RIVTCSHDRNAYVWTQPSGGTWKPT-LVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIR 146 (361)
T ss_pred ceeEccCCCCccccccCCCCeeccc-eeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccc
Confidence 9999999999999999777777632 23556889999999999998 999999999999998876332 112235678
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+.|++++|+|++ -+|++|+.|+.++||..
T Consensus 147 Stv~sldWhpnn-VLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 147 STVTSLDWHPNN-VLLAAGSTDGKCRVFSA 175 (361)
T ss_pred cceeeeeccCCc-ceecccccCcceeEEEE
Confidence 899999999999 99999999999999853
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=138.58 Aligned_cols=159 Identities=22% Similarity=0.281 Sum_probs=132.9
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
..+|+++.++ .++++|+..+.|+|||+.. ......+.+|+..|+++.++-... +
T Consensus 82 ~~Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~---------------------kl~hr~lkdh~stvt~v~YN~~De-y 135 (673)
T KOG4378|consen 82 AFCVACASQS----LYEISGGQSGCVKIWDLRA---------------------KLIHRFLKDHQSTVTYVDYNNTDE-Y 135 (673)
T ss_pred HHHHhhhhcc----eeeeccCcCceeeehhhHH---------------------HHHhhhccCCcceeEEEEecCCcc-e
Confidence 3455555554 6899999999999999986 345567889999999999999888 9
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccC-CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE-EecCCCC
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGH-SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS-FKAHNAD 322 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~-~~~h~~~ 322 (358)
||+++..|-|.|..+.+..+ ..+|... ...|.-+.++|..+.+|.+++.+|.|.+||+... .++.. ..+|.++
T Consensus 136 iAsvs~gGdiiih~~~t~~~----tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-sp~~~~~~~HsAP 210 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQK----TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-SPIFHASEAHSAP 210 (673)
T ss_pred eEEeccCCcEEEEecccCcc----ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC-CcccchhhhccCC
Confidence 99999999999999987443 2345433 4567789999999999999999999999999874 44444 4889999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
...|+|+|.++.+|++.|.|..|.+||++..+
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeeccccc
Confidence 99999999998999999999999999998653
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.1e-15 Score=125.68 Aligned_cols=173 Identities=18% Similarity=0.259 Sum_probs=132.4
Q ss_pred cCCCceeEEEEcCCC--CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 163 AHQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
+-.|.|.|.++.... ..+++.|-++|.|.+||++.....+.... ..+.......|..++.++++.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~-----------~~kv~~~~ash~qpvlsldyas~ 216 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQ-----------SSKVESPNASHKQPVLSLDYASS 216 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccc-----------ccccccchhhccCcceeeeechh
Confidence 345788888754322 35778888999999999998533222111 13444456679999999999987
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
.. .=++|+.+..+..|.++.............-....|..+..-|++. +|||++-|+.||||..|+. .++..++.|.
T Consensus 217 ~~-rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl-~pLAVLkyHs 293 (323)
T KOG0322|consen 217 CD-RGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTL-NPLAVLKYHS 293 (323)
T ss_pred hc-CCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccC-Cchhhhhhhh
Confidence 65 6677888889999999764222211222223345688899999999 9999999999999999995 5888889999
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+.|++++|+|+. .++|.+|.|++|.+|+|
T Consensus 294 agvn~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 294 AGVNAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred cceeEEEeCCCC-chhhhccCCceEEeeec
Confidence 999999999997 89999999999999986
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-14 Score=134.11 Aligned_cols=181 Identities=13% Similarity=0.210 Sum_probs=136.5
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCC-------CCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQG-------APQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
+..|+||+|-|.++.++...-.+|.+++||...........-...... ........|+..+.--+..|..++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 478999999998888888889999999998744222111111111100 0111234677776666678999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
+|++. +||+.+.||.++|+|..+.. .. ..+...-+...||+|||+++ +|++|+.|--|.||.+.. ++.+..-+
T Consensus 299 S~DG~-~LA~VSqDGfLRvF~fdt~e-Ll---g~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~e-rRVVARGq 371 (636)
T KOG2394|consen 299 SPDGK-YLATVSQDGFLRIFDFDTQE-LL---GVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFEE-RRVVARGQ 371 (636)
T ss_pred cCCCc-eEEEEecCceEEEeeccHHH-HH---HHHHhhccceEEEEEcCCcc-EEEecCCcceEEEEEecc-ceEEEecc
Confidence 99998 99999999999999997632 11 23344457899999999999 999999999999999987 45777779
Q ss_pred cCCCCeEEEEEeCC-----------------------------------------------CCcEEEEEeCCCCEEEEeC
Q 018322 318 AHNADVNVISWNRL-----------------------------------------------ASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 318 ~h~~~V~~i~~~p~-----------------------------------------------~~~~lasgs~Dg~i~iwDl 350 (358)
+|.++|+.|+|.|- -.+.|.+.+.|.++++||+
T Consensus 372 GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDl 451 (636)
T KOG2394|consen 372 GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDL 451 (636)
T ss_pred ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEec
Confidence 99999999999831 0245788899999999998
Q ss_pred CC
Q 018322 351 RL 352 (358)
Q Consensus 351 r~ 352 (358)
..
T Consensus 452 te 453 (636)
T KOG2394|consen 452 TE 453 (636)
T ss_pred ch
Confidence 63
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.9e-14 Score=133.92 Aligned_cols=168 Identities=18% Similarity=0.251 Sum_probs=134.4
Q ss_pred EEEec-CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC-CeEEEE
Q 018322 159 LRKVA-HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAID 236 (358)
Q Consensus 159 ~~~~~-H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~ 236 (358)
++++. -+.+|.+++|+.+. +.||.+-.+|.|-||++.. ..-....+.++.+ .|.+|+
T Consensus 18 crf~d~~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~--------------------~w~~~~vi~g~~drsIE~L~ 76 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSN--------------------NWFLEPVIHGPEDRSIESLA 76 (691)
T ss_pred EEEEeeeccceEEEEEeccC-CceeeeccCCcEEEEccCC--------------------CceeeEEEecCCCCceeeEE
Confidence 44444 36899999999988 6799999999999999988 3445556677664 899999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-eeEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-ALTS 315 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-~~~~ 315 (358)
|++.+ +|.|.+.+|.|.-||+.+... ...+....+.|.+++.+|.+. .++.|+.||.+.+++...+.- --..
T Consensus 77 W~e~~--RLFS~g~sg~i~EwDl~~lk~----~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 77 WAEGG--RLFSSGLSGSITEWDLHTLKQ----KYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred EccCC--eEEeecCCceEEEEecccCce----eEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEee
Confidence 99544 799999999999999988443 234556678999999999987 999999999777777765321 1112
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+....+.|.+++|+|++ ..|++|+.||.|++||..++..
T Consensus 150 l~rq~sRvLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t 188 (691)
T KOG2048|consen 150 LMRQKSRVLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQT 188 (691)
T ss_pred cccccceEEEEEecCCc-cEEEecccCceEEEEEcCCCce
Confidence 34457899999999999 8899999999999999987754
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.9e-14 Score=116.69 Aligned_cols=174 Identities=18% Similarity=0.238 Sum_probs=118.0
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
....+|.++|+.+.|.. .+|.+|++ |.|+-|..+....+........ ...|..+-..-..+|.++...
T Consensus 56 v~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe--------~~~P~~~~~~evPeINam~ld 123 (325)
T KOG0649|consen 56 VPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGWEWNEEEESLATKRLWE--------VKIPMQVDAVEVPEINAMWLD 123 (325)
T ss_pred eeccccCCCeeeeeeeh---hheeeccC-ceEEEeeehhhhhhccchhhhh--------hcCccccCcccCCccceeEec
Confidence 45589999999999983 46777665 9999999877443221111111 012222211223478999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe-
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK- 317 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~- 317 (358)
|... -++.++.|+.|+-||+.+ ++.. +.+.||+..|.++.--.... .+++|+.||++||||+++. +++..+.
T Consensus 124 P~en-Si~~AgGD~~~y~~dlE~-G~i~---r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~-k~v~~ie~ 196 (325)
T KOG0649|consen 124 PSEN-SILFAGGDGVIYQVDLED-GRIQ---REYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQ-KHVSMIEP 196 (325)
T ss_pred cCCC-cEEEecCCeEEEEEEecC-CEEE---EEEcCCcceeeeeeecccCc-ceeecCCCccEEEEecccc-ceeEEecc
Confidence 8877 444445799999999988 4433 78999999999998733333 6999999999999999995 4444442
Q ss_pred --------cC-CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 318 --------AH-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 318 --------~h-~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.| +..|-+++-+. ..|+.|+ -..+.+|.||+...
T Consensus 197 yk~~~~lRp~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 197 YKNPNLLRPDWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred ccChhhcCcccCceeEEEeccC---ceEEecC-CCceeEEeccCCCc
Confidence 12 23456666554 4566654 35799999998654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=120.88 Aligned_cols=171 Identities=16% Similarity=0.274 Sum_probs=126.5
Q ss_pred cCCCceeEEEEc-------CCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC---Ce
Q 018322 163 AHQGCVNRIRAM-------TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD---EG 232 (358)
Q Consensus 163 ~H~~~V~~i~~~-------p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v 232 (358)
.-.+.|....|- |+. .++|+.+.+.-|+|||.-... .+.-.....|.. ..
T Consensus 102 ~eg~tvydy~wYs~M~s~qP~t-~l~a~ssr~~PIh~wdaftG~-------------------lraSy~~ydh~de~taA 161 (406)
T KOG2919|consen 102 QEGETVYDYCWYSRMKSDQPST-NLFAVSSRDQPIHLWDAFTGK-------------------LRASYRAYDHQDEYTAA 161 (406)
T ss_pred ccCCEEEEEEeeeccccCCCcc-ceeeeccccCceeeeeccccc-------------------cccchhhhhhHHhhhhh
Confidence 345677776664 333 799999999999999997731 122222233544 34
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCC-cccCCCc---cccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDAT-WNVDPNP---FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~-~~~~~~~---~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
.+|+|+|+|. +|++|. ..+|+++|+..++. ..+.... -.+..+.+.+++|+|.....+|.|+...++-||.-..
T Consensus 162 hsL~Fs~DGe-qlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 162 HSLQFSPDGE-QLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred eeEEecCCCC-eEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 6899999998 888776 77999999944343 2211111 2234678999999998887999999988888886554
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC-CCCEEEEeCCCCCCCC
Q 018322 309 GKSALTSFKAHNADVNVISWNRLASCLLASGSD-DGTFSIHDLRLLKVRL 357 (358)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~-Dg~i~iwDlr~~~~~l 357 (358)
..++..+.+|.+.|+.++|.++| +.|.+|+. |-.|-.||+|.-+.||
T Consensus 240 -~~pl~llggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 240 -RRPLQLLGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred -CCceeeecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccchh
Confidence 45788888999999999999999 67777764 7799999999988775
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=134.70 Aligned_cols=152 Identities=18% Similarity=0.247 Sum_probs=110.9
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.++|.++.|+|++ .+||+.+-||+|+||++........-.. ..+...+. ....+.-++|+
T Consensus 132 ~~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~~~~tl~~------------v~k~n~~~-~s~i~~~~aW~ 197 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGILSKTLTG------------VDKDNEFI-LSRICTRLAWH 197 (933)
T ss_pred eeecccCCceeeeeEcCCC-CEEEEEecCceEEEEEcccchhhhhccc------------CCcccccc-ccceeeeeeec
Confidence 5677999999999999999 8999999999999999987322111000 11111111 13467789999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|.+. .|+..+.|+.|.+|+......... .....+.+.+.+++|+|.|. +||+++.+|.|.|||..+.. .+.
T Consensus 198 Pk~g-~la~~~~d~~Vkvy~r~~we~~f~--Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t~~-----~~~ 268 (933)
T KOG1274|consen 198 PKGG-TLAVPPVDNTVKVYSRKGWELQFK--LRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDTHE-----RHE 268 (933)
T ss_pred CCCC-eEEeeccCCeEEEEccCCceehee--ecccccccceEEEEEcCCCc-EEeeeccCCcEEEEecccch-----hcc
Confidence 9985 788888899999999866332211 11122445599999999999 99999999999999998721 133
Q ss_pred CCCCeEEEEEeCCCC
Q 018322 319 HNADVNVISWNRLAS 333 (358)
Q Consensus 319 h~~~V~~i~~~p~~~ 333 (358)
....|.+++|.|+..
T Consensus 269 ~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 269 FKRAVCCEAWKPNAN 283 (933)
T ss_pred ccceeEEEecCCCCC
Confidence 456799999999883
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.8e-14 Score=126.66 Aligned_cols=166 Identities=17% Similarity=0.262 Sum_probs=125.1
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC-CeEEEEeCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAIDWNP 239 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~ 239 (358)
.+...|.|..+.|+.++ ..|..++.+|.|.+||++. ...+..+....+ .+++++.++
T Consensus 340 s~KieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~---------------------~~~~~rf~D~G~v~gts~~~S~ 397 (514)
T KOG2055|consen 340 SFKIEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQ---------------------NSCLHRFVDDGSVHGTSLCISL 397 (514)
T ss_pred eeeeccEEeeEEEecCC-cEEEEEcCCceEEEEecCC---------------------cceEEEEeecCccceeeeeecC
Confidence 34457999999999888 5666667789999999998 355556654333 567888889
Q ss_pred CCCCeEEEEeCCCcEEEEecCCC--CCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC--CCcEEEEECCCCCCeeEE
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASD--ATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV--DGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~--~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~--Dg~I~iwD~r~~~~~~~~ 315 (358)
++. +||+|+..|.|.|||.++- .....+...+..-+..|++++|+++.+ +||.||. ...+|+-.+.+. .....
T Consensus 398 ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~-TVFsN 474 (514)
T KOG2055|consen 398 NGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSC-TVFSN 474 (514)
T ss_pred CCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccce-eeecc
Confidence 998 9999999999999997542 111222345556678999999999999 8888875 678898887652 11111
Q ss_pred E---ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 316 F---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 316 ~---~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+ ...-+.|+|++|+|.+ .+||.|..+|.+.+|.|..
T Consensus 475 fP~~n~~vg~vtc~aFSP~s-G~lAvGNe~grv~l~kL~h 513 (514)
T KOG2055|consen 475 FPTSNTKVGHVTCMAFSPNS-GYLAVGNEAGRVHLFKLHH 513 (514)
T ss_pred CCCCCCcccceEEEEecCCC-ceEEeecCCCceeeEeecc
Confidence 2 1223468999999998 8999999999999998863
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-13 Score=123.53 Aligned_cols=159 Identities=14% Similarity=0.219 Sum_probs=130.0
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
....++|....+.++..|+. .+++|++.|+.|+||+ .. ++..+. --..++.|++|
T Consensus 361 ~~~v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~-~~----------------------k~~wt~-~~~d~~~~~~f 415 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN-DH----------------------KLEWTK-IIEDPAECADF 415 (626)
T ss_pred eEEEEecccceeeEEcCCCh-hheeeccCcceEEEcc-CC----------------------ceeEEE-EecCceeEeec
Confidence 35677999999999999998 7899999999999999 22 343332 23468899999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF- 316 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~- 316 (358)
+|.+ .+|.|...|...+.|..+ ...+ .+...+.+++.++|+|+|. +||.|+.|+.|+||-+.........+
T Consensus 416 hpsg--~va~Gt~~G~w~V~d~e~-~~lv----~~~~d~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 416 HPSG--VVAVGTATGRWFVLDTET-QDLV----TIHTDNEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred cCcc--eEEEeeccceEEEEeccc-ceeE----EEEecCCceEEEEEcCCCC-EEEEecCCCeEEEEEECCCCcEEEEee
Confidence 9998 899999999999999976 2211 2222378999999999999 99999999999999988755544444
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+.|.++|+.+.|++++ .+|.+-+-|-.|-.|..
T Consensus 488 k~~gs~ithLDwS~Ds-~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 488 KCSGSPITHLDWSSDS-QFLVSNSGDYEILYWKP 520 (626)
T ss_pred eecCceeEEeeecCCC-ceEEeccCceEEEEEcc
Confidence 5566899999999999 99999999999999943
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-12 Score=118.96 Aligned_cols=162 Identities=11% Similarity=0.085 Sum_probs=108.8
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCC-cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
+...+..+.|+|++ .++++++.++ .+++||... ......+.. .....+++|++++.
T Consensus 113 ~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~---------------------~~~~~~~~~-~~~~~~~~~s~dg~ 169 (300)
T TIGR03866 113 VGVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKT---------------------YEIVDNVLV-DQRPRFAEFTADGK 169 (300)
T ss_pred CCCCcceEEECCCC-CEEEEEecCCCeEEEEeCCC---------------------CeEEEEEEc-CCCccEEEECCCCC
Confidence 33457889999999 6777777664 567788765 122222211 22456799999997
Q ss_pred CeE-EEEeCCCcEEEEecCCCCCcccCCCcccc---C--CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 243 GRL-VTGDCNSCIYLWEPASDATWNVDPNPFIG---H--SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 243 ~~l-~sgs~dg~I~lwd~~~~~~~~~~~~~~~~---h--~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
+| +++..++.|++||+.+...... ..+.. + ......++|+|++..++++.+.++.|.+||+++. .....+
T Consensus 170 -~l~~~~~~~~~v~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~~~~ 245 (300)
T TIGR03866 170 -ELWVSSEIGGTVSVIDVATRKVIKK--ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-EVLDYL 245 (300)
T ss_pred -EEEEEcCCCCEEEEEEcCcceeeee--eeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEE
Confidence 66 4555699999999987432110 01110 1 1123568899999855666667788999999874 333333
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEE-eCCCCEEEEeCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASG-SDDGTFSIHDLRLLK 354 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasg-s~Dg~i~iwDlr~~~ 354 (358)
.+...+.+++|+|++ .+|+++ +.+|.|++||+++++
T Consensus 246 -~~~~~~~~~~~~~~g-~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 246 -LVGQRVWQLAFTPDE-KYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred -EeCCCcceEEECCCC-CEEEEEcCCCCeEEEEECCCCc
Confidence 345579999999999 666654 568999999999876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-13 Score=115.77 Aligned_cols=175 Identities=17% Similarity=0.147 Sum_probs=131.1
Q ss_pred CceeEEEEcC---CCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 166 GCVNRIRAMT---QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 166 ~~V~~i~~~p---~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
..++.++|+. ++...++-+-..|.|.+|.......+. ...++....-......+++|++.+.
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~---------------~L~~ls~~ki~~~~~lslD~~~~~~ 134 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV---------------HLRGLSSKKISVVEALSLDISTSGT 134 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeee---------------eecccchhhhhheeeeEEEeeccCc
Confidence 5566666653 233366777788999999876632211 1122222211222466899999998
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE-EecCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS-FKAHNA 321 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~-~~~h~~ 321 (358)
.++++..+|.+.+-+..... ....+..+.|.-.+.-..|+..+++++.+|++|+.+..||+|.++..+.+ .+.|..
T Consensus 135 -~i~vs~s~G~~~~v~~t~~~--le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~ 211 (339)
T KOG0280|consen 135 -KIFVSDSRGSISGVYETEMV--LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS 211 (339)
T ss_pred -eEEEEcCCCcEEEEecceee--eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec
Confidence 79999999999965554321 21235678899999999999999999999999999999999976666655 478999
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRLV 358 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l~ 358 (358)
.|.+|.-+|..+.+|+||+.|..|++||.|+..+||.
T Consensus 212 GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~ 248 (339)
T KOG0280|consen 212 GVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF 248 (339)
T ss_pred ceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence 9999999998779999999999999999999988873
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-13 Score=118.25 Aligned_cols=165 Identities=17% Similarity=0.211 Sum_probs=120.4
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc-ccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN-ALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
...-+..+.+|+| +++|+++-.-.|++|.+--... .+ .....++.+.||+..|.+++|+++..
T Consensus 228 q~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~f--------------qev~rvf~LkGH~saV~~~aFsn~S~- 291 (420)
T KOG2096|consen 228 QSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTF--------------QEVKRVFSLKGHQSAVLAAAFSNSST- 291 (420)
T ss_pred cccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcch--------------hhhhhhheeccchhheeeeeeCCCcc-
Confidence 3445567889999 8999999999999998743110 00 12456778999999999999999998
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccC---C----CccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVD---P----NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~---~----~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
+++|.+.||+++|||+.-.-..... + .++..-.+.-..+..+|.+. .|| .+....|+++..+.++..-..-
T Consensus 292 r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA-~s~gs~l~~~~se~g~~~~~~e 369 (420)
T KOG2096|consen 292 RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLA-VSFGSDLKVFASEDGKDYPELE 369 (420)
T ss_pred eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEE-eecCCceEEEEcccCccchhHH
Confidence 9999999999999998542110000 1 12222334445899999998 554 4456789999999865322223
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
..|...|.+|+|+++| .+++|+|+ ..++++-
T Consensus 370 ~~h~~~Is~is~~~~g-~~~atcGd-r~vrv~~ 400 (420)
T KOG2096|consen 370 DIHSTTISSISYSSDG-KYIATCGD-RYVRVIR 400 (420)
T ss_pred HhhcCceeeEEecCCC-cEEeeecc-eeeeeec
Confidence 7899999999999999 99999874 6677654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-12 Score=118.73 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=111.0
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
..+..+.|+|++..++++++.++.|++||+.. ......+..+. .+..++|+|++. .+
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~-~~~~~~~~~~g~-~l 87 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT---------------------GEVIGTLPSGP-DPELFALHPNGK-IL 87 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCC---------------------CcEEEeccCCC-CccEEEECCCCC-EE
Confidence 44778999999855667888899999999876 23333344333 346789999987 55
Q ss_pred E-EEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC-cEEEEECCCCCCeeEEEecCCCCe
Q 018322 246 V-TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG-HIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 246 ~-sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg-~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
+ +++.++.|++||+.+... . ..+. +...+.+++|+|++. ++++++.++ .+.+||.++. ....... ....+
T Consensus 88 ~~~~~~~~~l~~~d~~~~~~-~---~~~~-~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~-~~~~~~~-~~~~~ 159 (300)
T TIGR03866 88 YIANEDDNLVTVIDIETRKV-L---AEIP-VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTY-EIVDNVL-VDQRP 159 (300)
T ss_pred EEEcCCCCeEEEEECCCCeE-E---eEee-CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCC-eEEEEEE-cCCCc
Confidence 4 556689999999976322 1 2222 233468899999998 788777765 5778898874 3333332 33456
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+++|+|++..+++++..++.|.+||+++.+
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 7899999994344566679999999998764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-12 Score=121.25 Aligned_cols=170 Identities=31% Similarity=0.488 Sum_probs=135.6
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeC-CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWAD-TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
........|...|+.+.|+|.+ ..+++++. ++.+++|++.. ...+..+.+|...+.+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRT---------------------GKPLSTLAGHTDPVSS 203 (466)
T ss_pred eEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCC---------------------CceEEeeccCCCceEE
Confidence 4446778899999999999999 47777775 99999999986 4566778889999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCC-ccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPN-PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~-~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
++|+|.+...+++++.|+.|++||... +... . .+.+|...+ -..|+|++. ++++++.|+.+++|+++......
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~-~~~~---~~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~ 277 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLST-GKLL---RSTLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLL 277 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCC-CcEE---eeecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEE
Confidence 999988862444558999999998874 2222 2 567777775 348999995 88899999999999999755434
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+..|...|.++.|+|.+ ..+++++.|+.+++||+++..
T Consensus 278 ~~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 278 RTLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred EEEecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCc
Confidence 4446788999999999977 666668888999999988764
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=116.38 Aligned_cols=170 Identities=18% Similarity=0.218 Sum_probs=125.9
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 246 (358)
.|.+-+++|.+ ++|+.|+.+|+|.++.+.......... ....++..+.+|.++++.++|.. . +|+
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~-----------~gk~~iv~eqahdgpiy~~~f~d--~-~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEP-----------PGKLKIVPEQAHDGPIYYLAFHD--D-FLL 76 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCC-----------CCCcceeeccccCCCeeeeeeeh--h-hee
Confidence 45666788988 799999999999999998743322211 12456677799999999999983 2 788
Q ss_pred EEeCCCcEEEEecCCCCCcccC----CCccccCC-----CcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 247 TGDCNSCIYLWEPASDATWNVD----PNPFIGHS-----ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~----~~~~~~h~-----~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
+|+ ||.|+-|..+........ .....-|. ..|+++...|.++.+|. ++.|+.++-||+.++ .....++
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G-~i~r~~r 153 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDG-RIQREYR 153 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCC-EEEEEEc
Confidence 887 699999987653220000 01111122 46889999999885555 457999999999996 4667889
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+|..-|.++.-.... .-++||+.||+++|||+++.+.
T Consensus 154 GHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k~ 190 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQKH 190 (325)
T ss_pred CCcceeeeeeecccC-cceeecCCCccEEEEeccccce
Confidence 999999999873333 4789999999999999998764
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-13 Score=128.60 Aligned_cols=173 Identities=17% Similarity=0.289 Sum_probs=130.2
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.+..|.-.|+++.|+|++ ++|++.+.|.++.+|........ .......+.|+.-|++.+|+|
T Consensus 567 ~L~~HsLTVT~l~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~-----------------e~~fa~~k~HtRIIWdcsW~p 628 (764)
T KOG1063|consen 567 ELEGHSLTVTRLAFSPDG-RYLLSVSRDRTVSLYEVQEDIKD-----------------EFRFACLKAHTRIIWDCSWSP 628 (764)
T ss_pred eecccceEEEEEEECCCC-cEEEEeecCceEEeeeeecccch-----------------hhhhccccccceEEEEcccCc
Confidence 577899999999999999 79999999999999998652211 011223678999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC----CEEEEEECCCcEEEEECCC-CCC---
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP----DVFASCSVDGHIAIWDTRV-GKS--- 311 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~----~~las~s~Dg~I~iwD~r~-~~~--- 311 (358)
++. +|+|+|.|++|.+|.................+..+|+.++|.|.-. .+++.|-..|.|.||.... .+.
T Consensus 629 de~-~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~ 707 (764)
T KOG1063|consen 629 DEK-YFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTV 707 (764)
T ss_pred ccc-eeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccc
Confidence 998 8999999999999998764211111113455789999999987543 3889999999999998541 100
Q ss_pred ----e---eEEEecCCCCeEEEEEeCCC---------CcEEEEEeCCCCEEEEeCC
Q 018322 312 ----A---LTSFKAHNADVNVISWNRLA---------SCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 312 ----~---~~~~~~h~~~V~~i~~~p~~---------~~~lasgs~Dg~i~iwDlr 351 (358)
. .....+|.+.|+.+.|.|.. -..|++|++|..++|+++.
T Consensus 708 ~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 708 GTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 0 11124577789999999752 1357999999999999864
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.4e-13 Score=112.71 Aligned_cols=149 Identities=16% Similarity=0.369 Sum_probs=101.9
Q ss_pred EEEEcCCCCcEEEEEeC---------CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC-CCCCeEEEEeCC
Q 018322 170 RIRAMTQNPHICASWAD---------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNP 239 (358)
Q Consensus 170 ~i~~~p~~~~~lat~s~---------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~ 239 (358)
.+.|+|+|..+++.... -|...||.++. ...+...+.- ..++|.+++|+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~--------------------~~~~~~~i~l~~~~~I~~~~WsP 69 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNE--------------------KNIPVESIELKKEGPIHDVAWSP 69 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEec--------------------CCCccceeeccCCCceEEEEECc
Confidence 46788888655555441 23455666644 1234444433 344799999999
Q ss_pred CCCCeEEE--EeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC---CCcEEEEECCCCCCeeE
Q 018322 240 ITTGRLVT--GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV---DGHIAIWDTRVGKSALT 314 (358)
Q Consensus 240 ~~~~~l~s--gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~---Dg~I~iwD~r~~~~~~~ 314 (358)
++. .||+ |...+.|.+||++. .. .+.-+...++.|.|+|.|+ ++++++. .|.|.+||++.. ..+.
T Consensus 70 ~g~-~favi~g~~~~~v~lyd~~~--~~-----i~~~~~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~~~-~~i~ 139 (194)
T PF08662_consen 70 NGN-EFAVIYGSMPAKVTLYDVKG--KK-----IFSFGTQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVRKK-KKIS 139 (194)
T ss_pred CCC-EEEEEEccCCcccEEEcCcc--cE-----eEeecCCCceEEEECCCCC-EEEEEEccCCCcEEEEEECCCC-EEee
Confidence 998 6544 45678999999962 21 1222456788999999999 7777764 467999999963 3444
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeC------CCCEEEEeCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSD------DGTFSIHDLR 351 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~------Dg~i~iwDlr 351 (358)
... |. .++.++|+|+| ++|+++.. |+.++||+..
T Consensus 140 ~~~-~~-~~t~~~WsPdG-r~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 140 TFE-HS-DATDVEWSPDG-RYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccc-cC-cEEEEEEcCCC-CEEEEEEeccceeccccEEEEEec
Confidence 432 33 47899999999 77777753 7889999974
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=129.32 Aligned_cols=157 Identities=19% Similarity=0.294 Sum_probs=125.0
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.-.|.|.++.|+|..+.+|++ +. ..|+|||+..+ ..+..+......|..++.+|.|.
T Consensus 564 kskG~vq~v~FHPs~p~lfVa-Tq-~~vRiYdL~kq---------------------elvKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 564 KSKGLVQRVKFHPSKPYLFVA-TQ-RSVRIYDLSKQ---------------------ELVKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred hcCCceeEEEecCCCceEEEE-ec-cceEEEehhHH---------------------HHHHHHhcCCeeeeeeeecCCCC
Confidence 346889999999999655544 33 57999999872 33334444455788999999998
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC-----C---CeeE
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-----K---SALT 314 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-----~---~~~~ 314 (358)
.|+.|+.|+.++.+|+.-..+.. +.+..|...|++|+||+.-+ +|++|+.||++.||--+-- . -++.
T Consensus 621 -nli~gs~d~k~~WfDldlsskPy---k~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK 695 (733)
T KOG0650|consen 621 -NLILGSYDKKMCWFDLDLSSKPY---KTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLK 695 (733)
T ss_pred -eEEEecCCCeeEEEEcccCcchh---HHhhhhhhhhhhhhhccccc-eeeeecCCCcEEEEeeeeehhhhcCCceEeee
Confidence 88999999999999997644433 67778999999999999999 9999999999999954321 1 1455
Q ss_pred EEecCCCC----eEEEEEeCCCCcEEEEEeCCCCEEEE
Q 018322 315 SFKAHNAD----VNVISWNRLASCLLASGSDDGTFSIH 348 (358)
Q Consensus 315 ~~~~h~~~----V~~i~~~p~~~~~lasgs~Dg~i~iw 348 (358)
.+.+|... |..+.|+|.. .+|+|++.||+|++|
T Consensus 696 ~L~gH~~~~~~gVLd~~wHP~q-pWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 696 RLRGHEKTNDLGVLDTIWHPRQ-PWLFSAGADGTIRLF 732 (733)
T ss_pred eccCceeecccceEeecccCCC-ceEEecCCCceEEee
Confidence 66788665 8888999999 889999999999998
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=126.25 Aligned_cols=191 Identities=16% Similarity=0.154 Sum_probs=139.8
Q ss_pred CCeEEEEEecCCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCe
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 232 (358)
.+.+.....+|.+.|.+++|.|.. ..+++||+.|..|++||+..........+ ...+...+..|...|
T Consensus 82 ~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~-----------~~~~~~~~~cht~rV 150 (758)
T KOG1310|consen 82 YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHG-----------MEETTRCWSCHTDRV 150 (758)
T ss_pred cceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccC-----------ccchhhhhhhhhhhh
Confidence 344556677999999999999954 57999999999999999986322221111 245566788899999
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccC------CCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD------PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~------~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
.-|+-.|.+++.+.+++.||+|+-+|++.+..+... ...+...--...++..+|..+++||.|+.|-..++||.
T Consensus 151 Kria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 151 KRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred hheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 999999999889999999999999999985432211 11222233456789999999999999999999999996
Q ss_pred CCCCC-----------------eeEEE-ecCC-----------CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 307 RVGKS-----------------ALTSF-KAHN-----------ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 307 r~~~~-----------------~~~~~-~~h~-----------~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
|...+ ++..+ .+|- ..++-+.|+|+|..+|++-+.+ .|+++|+...+.+
T Consensus 231 Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gE-hVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 231 RRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGE-HVYLFDVNEDKSP 308 (758)
T ss_pred hhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCe-EEEEEeecCCCCc
Confidence 53111 12222 1221 1246678999997788776653 7999999887765
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-14 Score=140.05 Aligned_cols=164 Identities=21% Similarity=0.324 Sum_probs=136.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
.++.+|...|+|+.|...+ .+++||++|..|+||.+.+ ..++..+.||.+.++.++.+
T Consensus 184 krLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et---------------------~~~lAs~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMET---------------------ARCLASCRGHSGDITDLAVS 241 (1113)
T ss_pred HHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccc---------------------hhhhccCCCCccccchhccc
Confidence 3456899999999999999 8999999999999999766 57788899999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC-CC-------
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV-GK------- 310 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~-~~------- 310 (358)
..+. +++++++|..|++|-+..+ ..+ ..+.+|++.|++|+|+|-. +.+.||++++||.|- ..
T Consensus 242 ~~n~-~iaaaS~D~vIrvWrl~~~-~pv---svLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 242 SNNT-MIAAASNDKVIRVWRLPDG-APV---SVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred hhhh-hhhhcccCceEEEEecCCC-chH---HHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCC
Confidence 9887 9999999999999999874 333 5688999999999999854 778899999999871 00
Q ss_pred -------------------------------------------------C-------------------------eeEEE
Q 018322 311 -------------------------------------------------S-------------------------ALTSF 316 (358)
Q Consensus 311 -------------------------------------------------~-------------------------~~~~~ 316 (358)
. ..+.+
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l 391 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL 391 (1113)
T ss_pred CcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh
Confidence 0 00112
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+|...+..+.++|.++.+..+++.||...|||+..+.
T Consensus 392 ~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 392 MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred cccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 34666788899999998888899999999999997654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-12 Score=117.01 Aligned_cols=162 Identities=15% Similarity=0.171 Sum_probs=125.7
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC-CCeEEEEeCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-DEGYAIDWNPIT 241 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~ 241 (358)
--..+|.+.+|.|+|...+++++.....+.||+... ...++....++. ..+..+..++++
T Consensus 255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a-------------------k~~k~~~~~g~e~~~~e~FeVShd~ 315 (514)
T KOG2055|consen 255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA-------------------KVTKLKPPYGVEEKSMERFEVSHDS 315 (514)
T ss_pred eccCccceeeecCCCceEEEecccceEEEEeecccc-------------------ccccccCCCCcccchhheeEecCCC
Confidence 346899999999999668999999999999999762 123333344554 356678889999
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
+ +|+..+..|.|+|.-..+ +.++ ..+. -.+.|.+++|+.++. .|++++.+|.|.+||++.. .++.++...++
T Consensus 316 ~-fia~~G~~G~I~lLhakT-~eli---~s~K-ieG~v~~~~fsSdsk-~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~ 387 (514)
T KOG2055|consen 316 N-FIAIAGNNGHIHLLHAKT-KELI---TSFK-IEGVVSDFTFSSDSK-ELLASGGTGEVYVWNLRQN-SCLHRFVDDGS 387 (514)
T ss_pred C-eEEEcccCceEEeehhhh-hhhh---heee-eccEEeeEEEecCCc-EEEEEcCCceEEEEecCCc-ceEEEEeecCc
Confidence 8 999999999999988766 3332 2332 357899999999998 7777788899999999985 67777754333
Q ss_pred -CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 322 -DVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 322 -~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.=++++.++++ .+||+|+..|.|.|||..+
T Consensus 388 v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 388 VHGTSLCISLNG-SYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred cceeeeeecCCC-ceEEeccCcceEEEeccch
Confidence 23567778889 8999999999999999653
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=125.69 Aligned_cols=173 Identities=18% Similarity=0.239 Sum_probs=143.8
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
..++.+++..+...|+++.-+|-= .++|.|..+|+|.|+++.. .+.+.+|+...+.|+
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~---------------------dkil~sFk~d~g~Vt 248 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKF---------------------DKILMSFKQDWGRVT 248 (910)
T ss_pred cCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEccc---------------------CcEEEEEEcccccee
Confidence 556778888999999999999987 7999999999999999987 567777876668999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC--C
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--S 311 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~ 311 (358)
+++|..+|...|++|+..|.+.+||+....... .....|.+.|..+.|.|..+ ++++.+.|.++++|=..++. .
T Consensus 249 slSFrtDG~p~las~~~~G~m~~wDLe~kkl~~---v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~p 324 (910)
T KOG1539|consen 249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN---VTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVP 324 (910)
T ss_pred EEEeccCCCeeEEeccCCceEEEEEcCCCeeee---eeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcc
Confidence 999999998889999999999999997643322 33446889999999999988 99999999999998554422 2
Q ss_pred -eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 312 -ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 312 -~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+..-.+|..+..+|.|.-...+.+.+++.|++++.+++.+
T Consensus 325 R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~ 366 (910)
T KOG1539|consen 325 RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVIS 366 (910)
T ss_pred hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhH
Confidence 33444789999999999854449999999999999888764
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-13 Score=120.59 Aligned_cols=158 Identities=20% Similarity=0.223 Sum_probs=125.9
Q ss_pred eEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEE
Q 018322 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (358)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 248 (358)
.+++|++++ ..+|+|+.||++|||++.. ...+.....|..+|.+|+|+|++. +|++-
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps---------------------~~t~l~e~~~~~eV~DL~FS~dgk-~lasi 204 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPS---------------------MLTILEEIAHHAEVKDLDFSPDGK-FLASI 204 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCc---------------------chhhhhhHhhcCccccceeCCCCc-EEEEe
Confidence 678999998 7999999999999999876 355666778899999999999998 99999
Q ss_pred eCCCcEEEEecCCCCCcccC-----------------C---------------------------------CccccCCCc
Q 018322 249 DCNSCIYLWEPASDATWNVD-----------------P---------------------------------NPFIGHSAS 278 (358)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~-----------------~---------------------------------~~~~~h~~~ 278 (358)
+.| ..+||+.+++..+... . +........
T Consensus 205 g~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s 283 (398)
T KOG0771|consen 205 GAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS 283 (398)
T ss_pred cCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc
Confidence 989 8999999875111000 0 000011237
Q ss_pred EEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
|.+++.+++|+ ++|.|+.||.|.|++....+.....-++|...|+.+.|+|+. +.+++-+.+.+..|.-+.-
T Consensus 284 iSsl~VS~dGk-f~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 284 ISSLAVSDDGK-FLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ceeEEEcCCCc-EEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEee
Confidence 88999999999 999999999999999987533333348899999999999999 8899888888888876653
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-13 Score=124.31 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=114.5
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
+....+|.+.|.+-||+|+| .-|.|.++||.|+||.....+ ..++.....+|+|++|
T Consensus 97 E~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGML----------------------RStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGML----------------------RSTVVQNEESIRCARW 153 (737)
T ss_pred hhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccchH----------------------HHHHhhcCceeEEEEE
Confidence 34455799999999999999 678899999999999976632 2234445679999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
.|+....+.+.+ +.+.+=-+....+ +-....|.+-|.++.|++... ++++|+.|-..+|||-.. .++..-.
T Consensus 154 ~p~S~~vl~c~g--~h~~IKpL~~n~k----~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~G--~~Lf~S~ 224 (737)
T KOG1524|consen 154 APNSNSIVFCQG--GHISIKPLAANSK----IIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQG--ANLFTSA 224 (737)
T ss_pred CCCCCceEEecC--CeEEEeecccccc----eeEEeccCcEEEEeecCcccc-ceeecCCceeEEeecccC--cccccCC
Confidence 999985666554 4555544433222 235678999999999999998 999999999999999864 4555667
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeC
Q 018322 318 AHNADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~ 341 (358)
+|..+|++++|+|+. +++.||.
T Consensus 225 ~~ey~ITSva~npd~--~~~v~S~ 246 (737)
T KOG1524|consen 225 AEEYAITSVAFNPEK--DYLLWSY 246 (737)
T ss_pred hhccceeeeeecccc--ceeeeee
Confidence 788888888888874 5666654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-13 Score=124.33 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=133.2
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.-...|..+.|-... .++|+ .....++|||-.. ..+..+..|. ++..|.|-|..-
T Consensus 168 ~v~Etv~Dv~~LHne-q~~AV-AQK~y~yvYD~~G----------------------tElHClk~~~-~v~rLeFLPyHf 222 (545)
T KOG1272|consen 168 NVMETVRDVTFLHNE-QFFAV-AQKKYVYVYDNNG----------------------TELHCLKRHI-RVARLEFLPYHF 222 (545)
T ss_pred ehhhhhhhhhhhcch-HHHHh-hhhceEEEecCCC----------------------cEEeehhhcC-chhhhcccchhh
Confidence 345778888888766 67776 4557899999654 4555565554 788999999987
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
+|++++..|.++.-|+..+ ..+ ..+....+.+..++-+|-+. ++-+|...|+|.+|...+ ..++..+..|.++
T Consensus 223 -LL~~~~~~G~L~Y~DVS~G-klV---a~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~s-kePLvKiLcH~g~ 295 (545)
T KOG1272|consen 223 -LLVAASEAGFLKYQDVSTG-KLV---ASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNS-KEPLVKILCHRGP 295 (545)
T ss_pred -eeeecccCCceEEEeechh-hhh---HHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCC-cchHHHHHhcCCC
Confidence 8999999999999999884 433 34555567788888999888 999999999999999887 4677788899999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
|++|++.++| +++||.|.|..++|||+|++.++
T Consensus 296 V~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 296 VSSIAVDRGG-RYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred cceEEECCCC-cEEeecccccceeEeeecccccc
Confidence 9999999999 99999999999999999998765
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.4e-12 Score=124.39 Aligned_cols=166 Identities=23% Similarity=0.243 Sum_probs=126.8
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCC--eEEEEeCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE--GYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~s~~~ 241 (358)
-...|+.+.....+.+++|.|-.||.|++||.+... ....+.....|+.. |..+.+.+.|
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~------------------~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP------------------PDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCC------------------ccccceeecccCCcccceeEEeecCC
Confidence 445666666655445899999999999999998732 13466778889886 9999999998
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccC---CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe-
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH---SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK- 317 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h---~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~- 317 (358)
-+.|++|+.+|.|.+||++...... ......| .+.++++..|+..+ ++|+|+. +.|+||++... .+..++
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~--~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~--~l~~~k~ 1342 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKET--FLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGE--QLNIIKY 1342 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccc--cceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChh--hhccccc
Confidence 8789999999999999999742211 1222223 23599999999998 9999998 99999998752 222221
Q ss_pred ------cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 318 ------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 318 ------~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.....+.|++|+|.. -+||.|+.|.+|.||...+.+
T Consensus 1343 n~~F~~q~~gs~scL~FHP~~-~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1343 NPGFMGQRIGSVSCLAFHPHR-LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CcccccCcCCCcceeeecchh-HhhhhccCCceEEEeecCCcC
Confidence 123457999999999 899999999999999877654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-11 Score=109.89 Aligned_cols=162 Identities=29% Similarity=0.492 Sum_probs=128.6
Q ss_pred CceeEEEE-cCCCCcEEEEEeC-CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 166 GCVNRIRA-MTQNPHICASWAD-TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 166 ~~V~~i~~-~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
..+..+.+ .+++..+++..+. ++.+++|++.. .......+..|...+.+++|+|.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~- 168 (466)
T COG2319 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLST--------------------PGKLIRTLEGHSESVTSLAFSPDGK- 168 (466)
T ss_pred CceeeEEEECCCcceEEeccCCCCccEEEEEecC--------------------CCeEEEEEecCcccEEEEEECCCCC-
Confidence 47777777 7777435555444 99999999986 1355667889999999999999998
Q ss_pred eEEEEeC-CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE-EEecCCC
Q 018322 244 RLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT-SFKAHNA 321 (358)
Q Consensus 244 ~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~-~~~~h~~ 321 (358)
.+++++. ++.+++|++... .. ...+.+|...|.+++|+|.+..++++++.|+.|++||.+.+ ..+. .+..|..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~ 243 (466)
T COG2319 169 LLASGSSLDGTIKLWDLRTG-KP---LSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSD 243 (466)
T ss_pred EEEecCCCCCceEEEEcCCC-ce---EEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCCCCc
Confidence 8888885 999999999762 22 24566699999999999988745666699999999998853 4554 5777887
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+ ...|+|++ .++++++.|+.+++|+++....
T Consensus 244 ~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 244 SV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred ce-eEeECCCC-CEEEEecCCCcEEEeeecCCCc
Confidence 75 44899999 8888999999999999987653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-12 Score=119.29 Aligned_cols=188 Identities=15% Similarity=0.168 Sum_probs=118.9
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc------------cccccccc-ccCCCCCCCCCCC-
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN------------ALAESETI-VGQGAPQVSNQSP- 221 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~------------~~~~~~~~-~~~~~~~~~~~~~- 221 (358)
.+...+.+|...|+|++|+.+| ..+|+|+.|..|.||.-.-..- .+.+.... .....+.-.-..+
T Consensus 44 ~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~ 122 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE 122 (1081)
T ss_pred ccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChh
Confidence 3446778999999999999999 7999999999999998654211 00000000 0000000000000
Q ss_pred cEEEcCC--CCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC------------
Q 018322 222 LVKFGGH--KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT------------ 287 (358)
Q Consensus 222 ~~~~~~h--~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~------------ 287 (358)
......| ...+.+.+|..+|. +|+.|-.+|+|.+-+-....+.. +..--|..++|.+|+|+|.
T Consensus 123 qK~V~K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~--I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~ 199 (1081)
T KOG1538|consen 123 QKSVSKHKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVK--IERPGGSNSPIWSICWNPSSGEGRNDILAVA 199 (1081)
T ss_pred hhhHHhhhhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceE--EeCCCCCCCCceEEEecCCCCCCccceEEEE
Confidence 0011122 24688999999998 99999999999987543321111 1222234455555555553
Q ss_pred ----------------------------------CCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCC
Q 018322 288 ----------------------------------EPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLAS 333 (358)
Q Consensus 288 ----------------------------------~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~ 333 (358)
|. +++.|+.|+.+++| +|.+ -.+-++.....+|+.++..|++
T Consensus 200 DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~f-TR~G-vrLGTvg~~D~WIWtV~~~PNs- 275 (1081)
T KOG1538|consen 200 DWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLF-TRDG-VRLGTVGEQDSWIWTVQAKPNS- 275 (1081)
T ss_pred eccceeEEEEecceeecccccCCCCchhheeccCCc-EEEEccCCCceEEE-eecC-eEEeeccccceeEEEEEEccCC-
Confidence 44 56666666666666 3332 2344454567789999999999
Q ss_pred cEEEEEeCCCCEEEEeCC
Q 018322 334 CLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 334 ~~lasgs~Dg~i~iwDlr 351 (358)
..++.|+.||+|..|++-
T Consensus 276 Q~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ceEEEEEccCeeehhhhH
Confidence 999999999999999874
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-10 Score=102.25 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=114.0
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC--CCeEEEEeCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK--DEGYAIDWNPI 240 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~s~~ 240 (358)
...++|..|++.++. +++. ..++|+||.+.... +.+..+.... ....+++-+..
T Consensus 92 ~f~~~I~~V~l~r~r--iVvv--l~~~I~VytF~~n~--------------------k~l~~~et~~NPkGlC~~~~~~~ 147 (346)
T KOG2111|consen 92 SFNSEIKAVKLRRDR--IVVV--LENKIYVYTFPDNP--------------------KLLHVIETRSNPKGLCSLCPTSN 147 (346)
T ss_pred EeccceeeEEEcCCe--EEEE--ecCeEEEEEcCCCh--------------------hheeeeecccCCCceEeecCCCC
Confidence 357899999999864 3333 34789999998632 2233332221 12222222222
Q ss_pred CCCeEEE-EeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCc-EEEEECCCCCCeeEEEe-
Q 018322 241 TTGRLVT-GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH-IAIWDTRVGKSALTSFK- 317 (358)
Q Consensus 241 ~~~~l~s-gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~-I~iwD~r~~~~~~~~~~- 317 (358)
.. +||- |-.-|.|.|-|+...... ....+..|.+.|.+++.+-+|. ++||+|..|+ |||||.+++ ..+..++
T Consensus 148 k~-~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g-~~l~E~RR 222 (346)
T KOG2111|consen 148 KS-LLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDG-TLLQELRR 222 (346)
T ss_pred ce-EEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCC-cEeeeeec
Confidence 22 3433 445689999999763221 1356778999999999999998 9999999985 899999996 4666663
Q ss_pred -cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 318 -AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 318 -~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
...+.|.+|+|+|+. .+||.+|+.|+|+||.++-.
T Consensus 223 G~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecC
Confidence 245679999999999 99999999999999999753
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.1e-13 Score=124.95 Aligned_cols=147 Identities=20% Similarity=0.450 Sum_probs=120.3
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 246 (358)
.|+.++|-|+|..++..++ ..+.|||.+. +..+.++++|++.|++++|+.+|. ++|
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~nd---------------------G~llqtLKgHKDtVycVAys~dGk-rFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSD---------------------GTLLQPLKGHKDTVYCVAYAKDGK-RFA 69 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCC---------------------cccccccccccceEEEEEEccCCc-eec
Confidence 8999999999976665544 4799999987 677888999999999999999999 999
Q ss_pred EEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEE
Q 018322 247 TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326 (358)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i 326 (358)
||+.|+.|.+|...-.+.. -..|+..|.|+.|+|-.. .++||+-. ..-+|.... +.+.. ......|++.
T Consensus 70 SG~aDK~VI~W~~klEG~L------kYSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~q--K~V~K-~kss~R~~~C 138 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKLEGIL------KYSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQ--KSVSK-HKSSSRIICC 138 (1081)
T ss_pred cCCCceeEEEeccccccee------eeccCCeeeEeecCchHH-Hhhhcchh-hccccChhh--hhHHh-hhhheeEEEe
Confidence 9999999999998654431 234999999999999887 89999863 466787665 22222 2234578999
Q ss_pred EEeCCCCcEEEEEeCCCCEEEEe
Q 018322 327 SWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 327 ~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
+|+.+| .+|+.|-.+|+|.|-+
T Consensus 139 sWtnDG-qylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 139 SWTNDG-QYLALGMFNGTISIRN 160 (1081)
T ss_pred eecCCC-cEEEEeccCceEEeec
Confidence 999999 9999999999998874
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=110.84 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=130.9
Q ss_pred CceeEEEEcCCCCcEEEEEeCC--CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC--CeEEEEeCCC-
Q 018322 166 GCVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYAIDWNPI- 240 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~- 240 (358)
..+..++-++..+.++|+|+.. ..+.|||+......+.... -| ...-+-.- -++++.|-+.
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKN-------------vp-nD~L~LrVPvW~tdi~Fl~g~ 214 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKN-------------VP-NDRLGLRVPVWITDIRFLEGS 214 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccC-------------CC-CccccceeeeeeccceecCCC
Confidence 7788899999999999999999 8899999987422221100 00 00001111 3457778776
Q ss_pred -CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 241 -TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 241 -~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
.. .||++..-+.+++||.+.+.+++ ..|.--..+++++...|.+. ++++|..-|.+..||+|.+......+.+-
T Consensus 215 ~~~-~fat~T~~hqvR~YDt~~qRRPV---~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 215 PNY-KFATITRYHQVRLYDTRHQRRPV---AQFDFLENPISSTGLTPSGN-FIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred CCc-eEEEEecceeEEEecCcccCcce---eEeccccCcceeeeecCCCc-EEEEecccchhheecccCceeeccccCCc
Confidence 44 89999999999999998755443 44555577899999999998 89999999999999999976555557888
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+.|.+|..+|.+ .+||+||-|..|+|+|+.+
T Consensus 290 tGsirsih~hp~~-~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 290 TGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cCCcceEEEcCCC-ceEEeeccceeEEEeeccc
Confidence 8999999999999 8999999999999999988
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=123.49 Aligned_cols=183 Identities=15% Similarity=0.177 Sum_probs=130.6
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
+.++...+..|...|++++.++....+|+|||.||+|++|+......... ......++..-...+.
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~--------------s~rS~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG--------------SARSELTYSPEGSRVE 1102 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc--------------eeeeeEEEeccCCceE
Confidence 45677778889999999999887767999999999999999987432210 1233344444456899
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCC-ccc--CCCccccC-CCcEEE-EEECCCCCC-EEEEEECCCcEEEEECC
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDAT-WNV--DPNPFIGH-SASVED-LQWSPTEPD-VFASCSVDGHIAIWDTR 307 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~-~~~--~~~~~~~h-~~~V~~-v~~sp~~~~-~las~s~Dg~I~iwD~r 307 (358)
++...+.+. .+|.|+.||.|++.++..... ... ..+....+ .+.+.+ -+|...... +++.+..-+.|..||+|
T Consensus 1103 ~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1103 KVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred EEEeccCCC-eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 999999998 999999999999999865211 100 00111111 223333 334333333 88889999999999999
Q ss_pred CCCCeeEEE--ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 308 VGKSALTSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 308 ~~~~~~~~~--~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+. .-+.++ ....+.|++++.+|.+ +++++|..-|.+-+||+|-.
T Consensus 1182 ~~-~~~w~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1182 MR-HDAWRLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hh-hhHHhhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecC
Confidence 84 333333 3334569999999999 89999999999999999853
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-10 Score=102.71 Aligned_cols=159 Identities=16% Similarity=0.256 Sum_probs=119.3
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc---CCCCCeEEEEeC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG---GHKDEGYAIDWN 238 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~s 238 (358)
+..+.+|.+|+++.+. +++ +-. ..|+|||++. -+++.++. .+...+.++..+
T Consensus 84 ~~fpt~IL~VrmNr~R--LvV-~Le-e~IyIydI~~---------------------MklLhTI~t~~~n~~gl~AlS~n 138 (391)
T KOG2110|consen 84 IFFPTSILAVRMNRKR--LVV-CLE-ESIYIYDIKD---------------------MKLLHTIETTPPNPKGLCALSPN 138 (391)
T ss_pred EecCCceEEEEEccce--EEE-EEc-ccEEEEeccc---------------------ceeehhhhccCCCccceEeeccC
Confidence 3457789999998754 444 344 3499999987 34444332 344567777777
Q ss_pred CCCCCeEEEE--eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCc-EEEEECCCCCCeeEE
Q 018322 239 PITTGRLVTG--DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH-IAIWDTRVGKSALTS 315 (358)
Q Consensus 239 ~~~~~~l~sg--s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~-I~iwD~r~~~~~~~~ 315 (358)
+.+. +||-- ...|.|.|||..+-.. ...+..|.+.+.+++|+++|. ++||+|..|+ ||||.+..+ +.+..
T Consensus 139 ~~n~-ylAyp~s~t~GdV~l~d~~nl~~----v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G-~kl~e 211 (391)
T KOG2110|consen 139 NANC-YLAYPGSTTSGDVVLFDTINLQP----VNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEG-QKLYE 211 (391)
T ss_pred CCCc-eEEecCCCCCceEEEEEccccee----eeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCc-cEeee
Confidence 7766 66643 2468999999976322 356778999999999999999 9999999885 799999885 46666
Q ss_pred EecC--CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 316 FKAH--NADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 316 ~~~h--~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
++.. ...|.+|+|+|++ .+|++.|..++|+||.|..-
T Consensus 212 FRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred eeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEeccc
Confidence 6432 3468999999999 88988899999999998653
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-12 Score=118.43 Aligned_cols=176 Identities=23% Similarity=0.319 Sum_probs=141.4
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE-EcCCCCCeEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-FGGHKDEGYAI 235 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l 235 (358)
+...+-+|.|+|+.|.|+..| .++++||+|.+|.+||... ..+... ..||...|+.-
T Consensus 134 l~~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~---------------------~~~~l~f~SGH~~NvfQa 191 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVS---------------------GSPKLSFESGHCNNVFQA 191 (559)
T ss_pred hhhcccCCCCccceeeecccC-ceeeccCccceEEeehhhc---------------------cCcccccccccccchhhh
Confidence 445677899999999999999 7999999999999999987 333333 45788888888
Q ss_pred EeCCCC-CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC--e
Q 018322 236 DWNPIT-TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS--A 312 (358)
Q Consensus 236 ~~s~~~-~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~--~ 312 (358)
.|-|.. ...+++++.||.+++=.+...+. ......+..|.++|.-++.-|..++.|.+|+.|+.+.-+|+|.... .
T Consensus 192 KFiP~s~d~ti~~~s~dgqvr~s~i~~t~~-~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 192 KFIPFSGDRTIVTSSRDGQVRVSEILETGY-VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred hccCCCCCcCceeccccCceeeeeeccccc-eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 888864 22789999999999988765333 2213456679999999999999999999999999999999998532 2
Q ss_pred eEEEecCCC---CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 313 LTSFKAHNA---DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 313 ~~~~~~h~~---~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+....++.. ..+.|+.+|...+.+++|+.|..+++||.|+...
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~ 316 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDK 316 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhh
Confidence 222244444 5789999999978999999999999999998654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=108.25 Aligned_cols=113 Identities=15% Similarity=0.211 Sum_probs=92.1
Q ss_pred eEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 232 v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
..|+.|++-|. +||+|+.+|.|.|||+.+.+. .+.+.+|..+|.+++||++|+ .|+|+|.|..|.+||++.+.
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~i----ar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs- 98 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRI----ARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGS- 98 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccch----hhhhhccccceeEEEecCCCC-EeeeecCCceeEEEeccCCC-
Confidence 67999999998 999999999999999988543 467889999999999999999 99999999999999999964
Q ss_pred eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 312 ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 312 ~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
++..+. ..++|..+.|+|...+..+..-.+..-.+-++..
T Consensus 99 ~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~ 138 (405)
T KOG1273|consen 99 PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD 138 (405)
T ss_pred ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecC
Confidence 666664 5778999999997645554444444444444443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.9e-11 Score=104.53 Aligned_cols=170 Identities=19% Similarity=0.284 Sum_probs=116.9
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
+..|.|++|-|.+..-||.|... -|.||......+.-....... .....+....|| .+|++|.|++++. .
T Consensus 140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s-------~~~~qvl~~pgh-~pVtsmqwn~dgt-~ 209 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMS-------THHLQVLQDPGH-NPVTSMQWNEDGT-I 209 (445)
T ss_pred hcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccccccc-------ccchhheeCCCC-ceeeEEEEcCCCC-E
Confidence 57899999999887788888875 599999876443221100000 012233445566 5999999999997 8
Q ss_pred EEEEeC-CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 245 LVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 245 l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
|++++. +..|.|||+.++.... +. .-..+.+.-+.|||++. +|.++..|+..++|.......+. ......+.|
T Consensus 210 l~tAS~gsssi~iWdpdtg~~~p--L~--~~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~wt~e-rw~lgsgrv 283 (445)
T KOG2139|consen 210 LVTASFGSSSIMIWDPDTGQKIP--LI--PKGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQSWTKE-RWILGSGRV 283 (445)
T ss_pred EeecccCcceEEEEcCCCCCccc--cc--ccCCCceeeEEEcCCCC-EEEEecccceeeeehhcccceec-ceeccCCce
Confidence 888874 6799999998854422 11 12346788899999999 88889999999999655433222 222234489
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
....|+|.|+.+|++++.. -++|.+..
T Consensus 284 qtacWspcGsfLLf~~sgs--p~lysl~f 310 (445)
T KOG2139|consen 284 QTACWSPCGSFLLFACSGS--PRLYSLTF 310 (445)
T ss_pred eeeeecCCCCEEEEEEcCC--ceEEEEee
Confidence 9999999997777776643 44555443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.6e-12 Score=116.15 Aligned_cols=153 Identities=18% Similarity=0.277 Sum_probs=125.1
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-...|+++.|-|.. .+|++++..|.++.-|++. ++.+..+..-.+.+..++-+|-+.
T Consensus 208 ~~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~---------------------GklVa~~~t~~G~~~vm~qNP~Na- 264 (545)
T KOG1272|consen 208 RHIRVARLEFLPYH-FLLVAASEAGFLKYQDVST---------------------GKLVASIRTGAGRTDVMKQNPYNA- 264 (545)
T ss_pred hcCchhhhcccchh-heeeecccCCceEEEeech---------------------hhhhHHHHccCCccchhhcCCccc-
Confidence 35789999999998 8999999999999999987 566666766677888999999987
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.+-+|...|+|.+|....... +..+..|.++|.+|++.++|. ++||.+.|..++|||+|.-. .++++.. ....
T Consensus 265 Vih~GhsnGtVSlWSP~skeP----LvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~-ql~t~~t-p~~a 337 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSKEP----LVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFY-QLHTYRT-PHPA 337 (545)
T ss_pred eEEEcCCCceEEecCCCCcch----HHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeecccc-ccceeec-CCCc
Confidence 999999999999999876333 246778999999999999999 99999999999999999854 4444433 3456
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
+.++++..| +||. |.-..|.||-
T Consensus 338 ~~ls~Sqkg--lLA~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 338 SNLSLSQKG--LLAL-SYGDHVQIWK 360 (545)
T ss_pred ccccccccc--ceee-ecCCeeeeeh
Confidence 788999877 4444 3445788884
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.7e-12 Score=116.21 Aligned_cols=141 Identities=20% Similarity=0.372 Sum_probs=112.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
..|+.++.||.+.|.+-.. +.......|.+.+.+-.|+|+|. -|++++.||.|++|.
T Consensus 76 d~~~i~s~DGkf~il~k~~----------------------rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWS 132 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA----------------------RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWS 132 (737)
T ss_pred ceEEEEcCCceEEEecccc----------------------hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEe
Confidence 5788889999999977554 44456778999999999999999 788889999999998
Q ss_pred cCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEE
Q 018322 259 PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLAS 338 (358)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~las 338 (358)
-. +... ..+.....+|.|++|.|+..+++.+.+ +.+.|=-+.. ...+...++|.+-|.++.|++.. .+|+|
T Consensus 133 rs--GMLR---Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~~s-~lI~s 203 (737)
T KOG1524|consen 133 RS--GMLR---STVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAA-NSKIIRWRAHDGLVLSLSWSTQS-NIIAS 203 (737)
T ss_pred cc--chHH---HHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccc-ccceeEEeccCcEEEEeecCccc-cceee
Confidence 53 2221 334456678999999999986776655 4555555554 34667889999999999999999 99999
Q ss_pred EeCCCCEEEEeCC
Q 018322 339 GSDDGTFSIHDLR 351 (358)
Q Consensus 339 gs~Dg~i~iwDlr 351 (358)
||.|-..+|||--
T Consensus 204 gGED~kfKvWD~~ 216 (737)
T KOG1524|consen 204 GGEDFRFKIWDAQ 216 (737)
T ss_pred cCCceeEEeeccc
Confidence 9999999999963
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.9e-11 Score=112.89 Aligned_cols=152 Identities=11% Similarity=0.109 Sum_probs=99.9
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
+....++|+|++..++.+.+.+|.+.||.+... ......+..+...+.+..|+|++. .|
T Consensus 248 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~--------------------~~~~~~lt~~~~~~~~~~wSpDG~-~i 306 (429)
T PRK01742 248 GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN--------------------GGTPSQLTSGAGNNTEPSWSPDGQ-SI 306 (429)
T ss_pred CccCceeECCCCCEEEEEEecCCcEEEEEEECC--------------------CCCeEeeccCCCCcCCEEECCCCC-EE
Confidence 334568999999545555567887776654321 122344556666788999999998 55
Q ss_pred E-EEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeE
Q 018322 246 V-TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (358)
Q Consensus 246 ~-sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (358)
+ +++.+|...||++...+... ..+ .+.. ..++|+|++. .|+.++.++ +.+||+.++... .+..+ ....
T Consensus 307 ~f~s~~~g~~~I~~~~~~~~~~---~~l-~~~~--~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~~~--~lt~~-~~~~ 375 (429)
T PRK01742 307 LFTSDRSGSPQVYRMSASGGGA---SLV-GGRG--YSAQISADGK-TLVMINGDN-VVKQDLTSGSTE--VLSST-FLDE 375 (429)
T ss_pred EEEECCCCCceEEEEECCCCCe---EEe-cCCC--CCccCCCCCC-EEEEEcCCC-EEEEECCCCCeE--EecCC-CCCC
Confidence 5 44567888999876533322 111 2333 4578999999 676666655 556999875422 22222 1345
Q ss_pred EEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 325 VISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.++|+|++ .+|+.++.+|.+.+|.+
T Consensus 376 ~~~~sPdG-~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 376 SPSISPNG-IMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CceECCCC-CEEEEEEcCCCceEEEE
Confidence 67899999 88888888898888875
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-11 Score=112.18 Aligned_cols=191 Identities=17% Similarity=0.215 Sum_probs=132.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccccccccccc-----CCC--CCCCCCCCcEEEcCCC--
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVG-----QGA--PQVSNQSPLVKFGGHK-- 229 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~h~-- 229 (358)
++-+.|+...++|..+|+|..++|||..--.|++||+......+...-.... ... .+..-.+.-..+.-|.
T Consensus 45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred HHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 5567799999999999999999999999999999999885544433211000 000 0000000001111111
Q ss_pred ---------CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCc
Q 018322 230 ---------DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH 300 (358)
Q Consensus 230 ---------~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~ 300 (358)
..+..++++.-.. -|+.++....|+-+++.. +.+. .+|....+.+++|..++-+. +|++|+.+|.
T Consensus 125 G~hy~~RIP~~GRDm~y~~~sc-Dly~~gsg~evYRlNLEq-GrfL---~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~ 198 (703)
T KOG2321|consen 125 GRHYRTRIPKFGRDMKYHKPSC-DLYLVGSGSEVYRLNLEQ-GRFL---NPFETDSGELNVVSINEEHG-LLACGTEDGV 198 (703)
T ss_pred CeeeeeecCcCCccccccCCCc-cEEEeecCcceEEEEccc-cccc---cccccccccceeeeecCccc-eEEecccCce
Confidence 1344566654444 344444466788888866 5655 67777779999999999988 9999999999
Q ss_pred EEEEECCCCCCeeEEE------ecCCC-----CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 301 IAIWDTRVGKSALTSF------KAHNA-----DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 301 I~iwD~r~~~~~~~~~------~~h~~-----~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
|-.||.|.. ..+.++ ..|.. .|++|+|+.+| -.++.|..+|.+.|||||+-++.+
T Consensus 199 VEfwDpR~k-srv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~pl~ 264 (703)
T KOG2321|consen 199 VEFWDPRDK-SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKPLL 264 (703)
T ss_pred EEEecchhh-hhheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCcee
Confidence 999999984 333333 23333 39999999988 899999999999999999876543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-10 Score=111.26 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=105.7
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCC---CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADT---GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
+..|...|...+|+|++ ..||..+.+ ..|++||+.... ...+..+.+| ..+++|
T Consensus 199 lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~-------------------~~~l~~~~g~---~~~~~w 255 (429)
T PRK01742 199 VNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGA-------------------RKVVASFRGH---NGAPAF 255 (429)
T ss_pred eccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCc-------------------eEEEecCCCc---cCceeE
Confidence 44678899999999999 455655533 469999987621 1122223343 336899
Q ss_pred CCCCCCeEEEE-eCCCcEEEE--ecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE
Q 018322 238 NPITTGRLVTG-DCNSCIYLW--EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 238 s~~~~~~l~sg-s~dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
+|++. +|+.+ +.+|.+.|| |+.. +. . ..+..+...+.+.+|+|++..++++...+|..+||++........
T Consensus 256 SPDG~-~La~~~~~~g~~~Iy~~d~~~-~~-~---~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 256 SPDGS-RLAFASSKDGVLNIYVMGANG-GT-P---SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CCCCC-EEEEEEecCCcEEEEEEECCC-CC-e---EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 99998 77665 468876666 5433 22 1 345556677889999999984444555688899998765332232
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+ .+.. ..++|+|++ ..|+.++.++ +.+||+.+++
T Consensus 330 ~l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~ 364 (429)
T PRK01742 330 LV-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGS 364 (429)
T ss_pred Ee-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCC
Confidence 23 3433 457899999 7777766654 6669998764
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-10 Score=98.49 Aligned_cols=112 Identities=19% Similarity=0.436 Sum_probs=82.1
Q ss_pred CCCceeEEEEcCCCCcEEEE-EeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICAS-WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat-~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
..++|..++|+|++..++++ |..++.|.|||+.. .++..+. ...+..|.|+|.|.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----------------------~~i~~~~--~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----------------------KKIFSFG--TQPRNTISWSPDGR 113 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----------------------cEeEeec--CCCceEEEECCCCC
Confidence 45779999999999555444 44677999999964 4455553 45677899999998
Q ss_pred CeEEEEeC---CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC------CCcEEEEECC
Q 018322 243 GRLVTGDC---NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV------DGHIAIWDTR 307 (358)
Q Consensus 243 ~~l~sgs~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~------Dg~I~iwD~r 307 (358)
+|++|+. .|.|.+||+++... + ..+ +...+..++|+|+|+ +|+++.. |..++||+..
T Consensus 114 -~l~~~g~~n~~G~l~~wd~~~~~~-i---~~~--~~~~~t~~~WsPdGr-~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 114 -FLVLAGFGNLNGDLEFWDVRKKKK-I---STF--EHSDATDVEWSPDGR-YLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred -EEEEEEccCCCcEEEEEECCCCEE-e---ecc--ccCcEEEEEEcCCCC-EEEEEEeccceeccccEEEEEec
Confidence 8888764 46799999985322 1 122 234578999999999 6666653 7889999985
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-09 Score=95.72 Aligned_cols=183 Identities=16% Similarity=0.144 Sum_probs=124.9
Q ss_pred CCCCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEee-ccCCccccCC
Q 018322 44 LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVS-NISGKRRELV 122 (358)
Q Consensus 44 ~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~-~l~~~~~~~~ 122 (358)
..++..+..|...|..+.++...-|..++..-++ ++|+-. .|.|+||.+. |+..
T Consensus 72 y~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~-------------riVvvl------~~~I~VytF~~n~k~------ 126 (346)
T KOG2111|consen 72 YPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD-------------RIVVVL------ENKIYVYTFPDNPKL------ 126 (346)
T ss_pred CCCceEEEEecccCcEEEEEEeccceeeEEEcCC-------------eEEEEe------cCeEEEEEcCCChhh------
Confidence 4566667777777777777777888888887776 233333 4689999985 2211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEE-EeCCCcEEEEeCCCCccc
Q 018322 123 PNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICAS-WADTGHVQVWDLRSHLNA 201 (358)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat-~s~dg~V~iwd~~~~~~~ 201 (358)
+..+.....+..+.++.-.... .+||. |-..|.|+|-|+...
T Consensus 127 ---------------------------------l~~~et~~NPkGlC~~~~~~~k-~~LafPg~k~GqvQi~dL~~~--- 169 (346)
T KOG2111|consen 127 ---------------------------------LHVIETRSNPKGLCSLCPTSNK-SLLAFPGFKTGQVQIVDLAST--- 169 (346)
T ss_pred ---------------------------------eeeeecccCCCceEeecCCCCc-eEEEcCCCccceEEEEEhhhc---
Confidence 1112222222233322222222 34444 556799999999872
Q ss_pred cccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCc-EEEEecCCCCCcccCCCccccCCCcEE
Q 018322 202 LAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSC-IYLWEPASDATWNVDPNPFIGHSASVE 280 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~-I~lwd~~~~~~~~~~~~~~~~h~~~V~ 280 (358)
...+-..+..|...|.|++.+-+|. ++||+|..|+ |+|||..++.. ....+. -.....|.
T Consensus 170 ----------------~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~-l~E~RR-G~d~A~iy 230 (346)
T KOG2111|consen 170 ----------------KPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTL-LQELRR-GVDRADIY 230 (346)
T ss_pred ----------------CcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcE-eeeeec-CCchheEE
Confidence 1224567889999999999999998 9999999984 78999988543 211111 11346899
Q ss_pred EEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 281 DLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 281 ~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
+++|||+.. ++|..|+.|+|+||.++.
T Consensus 231 ~iaFSp~~s-~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 231 CIAFSPNSS-WLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEeCCCcc-EEEEEcCCCeEEEEEeec
Confidence 999999998 999999999999998876
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=115.78 Aligned_cols=144 Identities=20% Similarity=0.283 Sum_probs=120.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
-++++|+.-+.|.+|+... ...|. .+.||.+.++++.|+.++. ++++.|.|.+|++|+
T Consensus 146 ~~i~~gsv~~~iivW~~~~--------------------dn~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~ 203 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHE--------------------DNKPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWP 203 (967)
T ss_pred EEEEeccccccEEEEeccc--------------------cCCcc-eecccCCceEEEEEccCCc-EEEEEecCcceeeee
Confidence 7899999999999999874 23444 6889999999999999998 999999999999999
Q ss_pred cCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC-CCeEEEEEeCCCCcEEE
Q 018322 259 PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN-ADVNVISWNRLASCLLA 337 (358)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~-~~V~~i~~~p~~~~~la 337 (358)
+.+..... ....+|+..|..++|+|+ .+++++.|-+.++|+... ..+..+..|. ..|..++..+.. .+++
T Consensus 204 i~s~~~~~---~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~--~~l~~y~~h~g~~iw~~~~~~~~-~~~v 274 (967)
T KOG0974|consen 204 IDSREVLG---CTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNG--TQLEVYDEHSGKGIWKIAVPIGV-IIKV 274 (967)
T ss_pred cccccccC---cccccccceeEEEEeccc---eeEEeccceEEEEEeccc--ceehhhhhhhhcceeEEEEcCCc-eEEE
Confidence 98744322 456789999999999997 699999999999996654 3344566664 468999998888 8999
Q ss_pred EEeCCCCEEEEeCCCC
Q 018322 338 SGSDDGTFSIHDLRLL 353 (358)
Q Consensus 338 sgs~Dg~i~iwDlr~~ 353 (358)
|++.||.+++||+...
T Consensus 275 T~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 275 TGGNDSTLKLWDLNGR 290 (967)
T ss_pred eeccCcchhhhhhhcc
Confidence 9999999999998654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-11 Score=113.62 Aligned_cols=162 Identities=15% Similarity=0.230 Sum_probs=131.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCC---CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADT---GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
...+.|...|+.+.|+..| .+|||...+ ..|.|+++... ....-|....+.+.++
T Consensus 515 ~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~---------------------~sQ~PF~kskG~vq~v 572 (733)
T KOG0650|consen 515 CIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKR---------------------KSQSPFRKSKGLVQRV 572 (733)
T ss_pred EEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEecccc---------------------cccCchhhcCCceeEE
Confidence 5678899999999999999 688876654 46899999873 2223344455678899
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
.|+|... +|++++ ...|++||+.. +..+ +.+......|..++.+|.|. -++.|+.|+.+..||+..+.++..+
T Consensus 573 ~FHPs~p-~lfVaT-q~~vRiYdL~k-qelv---KkL~tg~kwiS~msihp~GD-nli~gs~d~k~~WfDldlsskPyk~ 645 (733)
T KOG0650|consen 573 KFHPSKP-YLFVAT-QRSVRIYDLSK-QELV---KKLLTGSKWISSMSIHPNGD-NLILGSYDKKMCWFDLDLSSKPYKT 645 (733)
T ss_pred EecCCCc-eEEEEe-ccceEEEehhH-HHHH---HHHhcCCeeeeeeeecCCCC-eEEEecCCCeeEEEEcccCcchhHH
Confidence 9999998 888887 45899999965 3322 33444456788999999998 6778999999999999987778889
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+..|...|++++|++.- .++++|++||++.||--
T Consensus 646 lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 646 LRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHG 679 (733)
T ss_pred hhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEee
Confidence 99999999999999988 89999999999999854
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=97.25 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=92.1
Q ss_pred cCCCceeEEEEcCCCCcEEEE--EeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICAS--WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat--~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
+|...+..+.+++.+ .++|- ....|.|.|||..+ .+++..+..|.+++-||+|+++
T Consensus 127 ~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~n---------------------l~~v~~I~aH~~~lAalafs~~ 184 (391)
T KOG2110|consen 127 PNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTIN---------------------LQPVNTINAHKGPLAALAFSPD 184 (391)
T ss_pred CCccceEeeccCCCC-ceEEecCCCCCceEEEEEccc---------------------ceeeeEEEecCCceeEEEECCC
Confidence 455566666666655 45553 22358999999987 6888999999999999999999
Q ss_pred CCCeEEEEeCCCc-EEEEecCCCCCcccCCCcccc--CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 241 TTGRLVTGDCNSC-IYLWEPASDATWNVDPNPFIG--HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 241 ~~~~l~sgs~dg~-I~lwd~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
|. +|||++..|+ |+|+.+.++.+. ..|.. ....|.+++|+|++. +|++.|..++|+||.+..
T Consensus 185 G~-llATASeKGTVIRVf~v~~G~kl----~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 185 GT-LLATASEKGTVIRVFSVPEGQKL----YEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEK 249 (391)
T ss_pred CC-EEEEeccCceEEEEEEcCCccEe----eeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecc
Confidence 98 9999999885 689999775432 22322 245789999999999 899999999999998753
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7e-11 Score=117.18 Aligned_cols=159 Identities=17% Similarity=0.202 Sum_probs=115.7
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeC
Q 018322 171 IRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC 250 (358)
Q Consensus 171 i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~ 250 (358)
+.|..+...++ ++|+-..|+|||..... ...-.-.+....+++|.-+..+.+.+++|..
T Consensus 1171 ~dWqQ~~G~Ll-~tGd~r~IRIWDa~~E~--------------------~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1171 VDWQQQSGHLL-VTGDVRSIRIWDAHKEQ--------------------VVADIPYGSSTLVTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred eehhhhCCeEE-ecCCeeEEEEEecccce--------------------eEeecccCCCccceeecccccCCceEEEeec
Confidence 45666554444 44557899999998731 1111222344577788766555449999999
Q ss_pred CCcEEEEecCCCCCcccCCCccccCCCc--EEEEEECCCCCCEEEEEECCCcEEEEECCCC-CCeeEEEecC---CCCeE
Q 018322 251 NSCIYLWEPASDATWNVDPNPFIGHSAS--VEDLQWSPTEPDVFASCSVDGHIAIWDTRVG-KSALTSFKAH---NADVN 324 (358)
Q Consensus 251 dg~I~lwd~~~~~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~-~~~~~~~~~h---~~~V~ 324 (358)
||.|++||.+.... ......+..|+.. |..+.+.+.|-.-+++|+.+|.|++||+|+. ......+..| ++.++
T Consensus 1230 DGsvRvyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lT 1308 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALT 1308 (1387)
T ss_pred CCceEEeecccCCc-cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccce
Confidence 99999999987433 1223556678777 9999999988656999999999999999983 2233334444 34699
Q ss_pred EEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 325 VISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
++..+++. .+||+|+. +.|+||++..-
T Consensus 1309 al~VH~ha-piiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1309 ALTVHEHA-PIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred eeeeccCC-CeeeecCc-ceEEEEecChh
Confidence 99999998 89999998 99999998643
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=114.64 Aligned_cols=118 Identities=18% Similarity=0.306 Sum_probs=96.4
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-.+.|+.++|+|++ .+||+.+.||.+||||+... ..+..++..-+...|++|||+++
T Consensus 289 ~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~---------------------eLlg~mkSYFGGLLCvcWSPDGK- 345 (636)
T KOG2394|consen 289 GEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQ---------------------ELLGVMKSYFGGLLCVCWSPDGK- 345 (636)
T ss_pred ccccccceeEcCCC-ceEEEEecCceEEEeeccHH---------------------HHHHHHHhhccceEEEEEcCCcc-
Confidence 35799999999988 89999999999999999872 33333444446789999999999
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC------------------------------------
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT------------------------------------ 287 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~------------------------------------ 287 (358)
+|++|+.|-.|.||.+.. .+.+ ..-++|++.|..|+|.|-
T Consensus 346 yIvtGGEDDLVtVwSf~e-rRVV---ARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~ 421 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEE-RRVV---ARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEG 421 (636)
T ss_pred EEEecCCcceEEEEEecc-ceEE---EeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCC
Confidence 999999999999999976 3322 456789999999999831
Q ss_pred -----------CCCEEEEEECCCcEEEEECCC
Q 018322 288 -----------EPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 288 -----------~~~~las~s~Dg~I~iwD~r~ 308 (358)
-.+.|.+++.|-.+.|||+..
T Consensus 422 ~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 422 CPLSSFNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred CcccccccccceEEEeecccccceEEEEecch
Confidence 023688999999999999864
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.9e-12 Score=118.94 Aligned_cols=217 Identities=18% Similarity=0.349 Sum_probs=164.9
Q ss_pred hhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCC
Q 018322 60 LHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSD 139 (358)
Q Consensus 60 ~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (358)
...+.+.|-.--+||-|... .-|-++.|...+ -.||.+.. .
T Consensus 61 ~l~h~tpw~vad~qws~h~a---------~~~wiVsts~qk-----aiiwnlA~---s---------------------- 101 (1081)
T KOG0309|consen 61 WLHHITPWQVADVQWSPHPA---------KPYWIVSTSNQK-----AIIWNLAK---S---------------------- 101 (1081)
T ss_pred eeeccCcchhcceecccCCC---------CceeEEecCcch-----hhhhhhhc---C----------------------
Confidence 34456788888888887642 246666774432 23565531 0
Q ss_pred CCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCC
Q 018322 140 SDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ 219 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (358)
....+++.+.+|...|+.+.|.|+.+.++||++.|..|+.||++. ..
T Consensus 102 -------------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS--------------------p~ 148 (1081)
T KOG0309|consen 102 -------------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS--------------------PH 148 (1081)
T ss_pred -------------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC--------------------CC
Confidence 144567889999999999999999999999999999999999998 45
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (358)
.|+..+..-......++|+.... .+++.+....|++||.+.++... ..+.+|...|+.+.|...-...+.+++.||
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p-~vlasshg~~i~vwd~r~gs~pl---~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~ 224 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDP-NVLASSHGNDIFVWDLRKGSTPL---CSLKGHVSSVNSIDFNRFKYSEIMSSSNDG 224 (1081)
T ss_pred cceeeeecccccCceeeecccCc-chhhhccCCceEEEeccCCCcce---EEecccceeeehHHHhhhhhhhhcccCCCC
Confidence 77776665555677899998887 55555667899999999876654 567779999999999876666899999999
Q ss_pred cEEEEECCCC------------------------------------------------------CCeeEEEecCCCCeEE
Q 018322 300 HIAIWDTRVG------------------------------------------------------KSALTSFKAHNADVNV 325 (358)
Q Consensus 300 ~I~iwD~r~~------------------------------------------------------~~~~~~~~~h~~~V~~ 325 (358)
+|+.||.... ..+++++.+|...|-.
T Consensus 225 tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~e 304 (1081)
T KOG0309|consen 225 TVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLE 304 (1081)
T ss_pred ceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHH
Confidence 9999987321 1256677788887777
Q ss_pred EEEeCCC---------CcEEEEEeCCCCEEEEeCCC
Q 018322 326 ISWNRLA---------SCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 326 i~~~p~~---------~~~lasgs~Dg~i~iwDlr~ 352 (358)
..|-..+ ...|+|-+.|.++++|-+.+
T Consensus 305 FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 305 FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred HhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 6675433 25799999999999998754
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.4e-10 Score=107.15 Aligned_cols=162 Identities=14% Similarity=0.039 Sum_probs=103.4
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeC---CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
+..|...+...+|+|++ ..|+..+. ...|++||+... .. ..+..+.....++.|
T Consensus 199 lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g---------------------~~-~~l~~~~g~~~~~~~ 255 (433)
T PRK04922 199 ILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATG---------------------QR-ELVASFRGINGAPSF 255 (433)
T ss_pred eecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCC---------------------CE-EEeccCCCCccCceE
Confidence 33577889999999999 45665553 246999998651 21 222233334457899
Q ss_pred CCCCCCeEEEEeCCC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE-CCCc--EEEEECCCCCCe
Q 018322 238 NPITTGRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGH--IAIWDTRVGKSA 312 (358)
Q Consensus 238 s~~~~~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~--I~iwD~r~~~~~ 312 (358)
+|++..++++.+.+| .|++||+.++.. ..+..+.......+|+|++. .|+.++ .+|. |.++|+..+.
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-----~~lt~~~~~~~~~~~spDG~-~l~f~sd~~g~~~iy~~dl~~g~-- 327 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQL-----TRLTNHFGIDTEPTWAPDGK-SIYFTSDRGGRPQIYRVAASGGS-- 327 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCe-----EECccCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCCC--
Confidence 999983334556555 599999876322 23444555566789999998 555555 4555 5556665532
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEe-CCC--CEEEEeCCCCC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGS-DDG--TFSIHDLRLLK 354 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs-~Dg--~i~iwDlr~~~ 354 (358)
...+..+......++|+|++ ..|+..+ .++ .|.+||+.+.+
T Consensus 328 ~~~lt~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 328 AERLTFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred eEEeecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCC
Confidence 33333334445578999999 5665543 333 69999997664
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.1e-10 Score=99.90 Aligned_cols=115 Identities=26% Similarity=0.373 Sum_probs=92.1
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS- 311 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~- 311 (358)
.+++|+.++. .|++|+.||++|+|+..+... ......|...|.++.|+|++. ++++.+.| ..+||+++++..
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t----~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLT----ILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchh----hhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCchh
Confidence 6899999998 999999999999999654332 245667999999999999999 99999999 999999987510
Q ss_pred --------------------------eeE----------E--E-ecC-------------CCCeEEEEEeCCCCcEEEEE
Q 018322 312 --------------------------ALT----------S--F-KAH-------------NADVNVISWNRLASCLLASG 339 (358)
Q Consensus 312 --------------------------~~~----------~--~-~~h-------------~~~V~~i~~~p~~~~~lasg 339 (358)
.+. . + ..+ ...|.+++.+++| .++|.|
T Consensus 221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG-kf~AlG 299 (398)
T KOG0771|consen 221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG-KFLALG 299 (398)
T ss_pred hhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-cEEEEe
Confidence 000 0 0 001 1258899999999 999999
Q ss_pred eCCCCEEEEeCCCCCC
Q 018322 340 SDDGTFSIHDLRLLKV 355 (358)
Q Consensus 340 s~Dg~i~iwDlr~~~~ 355 (358)
+.||.|.|++..+++.
T Consensus 300 T~dGsVai~~~~~lq~ 315 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQR 315 (398)
T ss_pred ccCCcEEEEEeceeee
Confidence 9999999999987764
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-09 Score=98.37 Aligned_cols=171 Identities=9% Similarity=0.065 Sum_probs=111.5
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
....+.+....+.++|++..+++++..++.|.+|++.... . ........ .......++++|
T Consensus 29 ~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-~-----------------l~~~~~~~-~~~~p~~i~~~~ 89 (330)
T PRK11028 29 QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-A-----------------LTFAAESP-LPGSPTHISTDH 89 (330)
T ss_pred eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC-c-----------------eEEeeeec-CCCCceEEEECC
Confidence 3445567788999999995555555668899999996310 0 01111111 122456899999
Q ss_pred CCCCeEEEEe-CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee----E
Q 018322 240 ITTGRLVTGD-CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL----T 314 (358)
Q Consensus 240 ~~~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~----~ 314 (358)
+++ +|++++ .++.|.+|++.+.+........+. +...+..++++|+++.+++++..++.|.+||+....... .
T Consensus 90 ~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 90 QGR-FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred CCC-EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 998 666665 488999999975333211111122 234567789999998666777788999999998632211 1
Q ss_pred EEe-cCCCCeEEEEEeCCCCcEEEEEeC-CCCEEEEeCCC
Q 018322 315 SFK-AHNADVNVISWNRLASCLLASGSD-DGTFSIHDLRL 352 (358)
Q Consensus 315 ~~~-~h~~~V~~i~~~p~~~~~lasgs~-Dg~i~iwDlr~ 352 (358)
... ........+.|+|++ .+++++.. +++|.+|++..
T Consensus 168 ~~~~~~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 168 EVTTVEGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred ceecCCCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeC
Confidence 111 123456789999999 66655554 89999999973
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-10 Score=101.76 Aligned_cols=169 Identities=12% Similarity=0.100 Sum_probs=121.8
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC---CCeEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK---DEGYAI 235 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l 235 (358)
+.-..|...|.|+.|...+ .++.+|..+++|.+.|+.+ .+.+.++ .|. +.||.+
T Consensus 99 ~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiEt---------------------~qsi~V~-~~~~~~~~VY~m 155 (609)
T KOG4227|consen 99 VMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIET---------------------KQSIYVA-NENNNRGDVYHM 155 (609)
T ss_pred eccCccccceEEEEEccCC-eeEecCCCcceeEeeeccc---------------------ceeeeee-cccCcccceeec
Confidence 3445677999999999877 7999999999999999987 3334433 343 489999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
+-+|..+ .|++.+.+|.|.+||++....... +............+-|+|-.+.+|++.+..+-+-+||+|....++..
T Consensus 156 ~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~-~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~ 233 (609)
T KOG4227|consen 156 DQHPTDN-TLIVVTRAKLVSFIDNRDRQNPIS-LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQ 233 (609)
T ss_pred ccCCCCc-eEEEEecCceEEEEeccCCCCCCc-eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHh
Confidence 9999976 999999999999999987543221 12223345678889999999989999999999999999986655544
Q ss_pred EecC------CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 316 FKAH------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 316 ~~~h------~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.... ...-..+.|+|.|..++ +--.-..-.+||+.+.
T Consensus 234 ~~~~~~L~~~~~~~M~~~~~~~G~Q~m-siRR~~~P~~~D~~S~ 276 (609)
T KOG4227|consen 234 RSMFKGLPQENTEWMGSLWSPSGNQFM-SIRRGKCPLYFDFISQ 276 (609)
T ss_pred hhccccCcccchhhhheeeCCCCCeeh-hhhccCCCEEeeeecc
Confidence 3221 11224678999994443 3322233345555543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-09 Score=103.01 Aligned_cols=161 Identities=12% Similarity=0.066 Sum_probs=106.9
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeC---CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
+..|.+.+...+|+|++. .||..+. +..|++||+.. ... ..+..+...+.+.+|
T Consensus 197 lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~---------------------g~~-~~l~~~~g~~~~~~~ 253 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLET---------------------GQR-ELVGNFPGMTFAPRF 253 (435)
T ss_pred EecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCC---------------------CcE-EEeecCCCcccCcEE
Confidence 346788999999999994 5555442 46899999976 222 234455566778999
Q ss_pred CCCCCCeEEEEeCCCc--EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE-CCC--cEEEEECCCCCCe
Q 018322 238 NPITTGRLVTGDCNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDG--HIAIWDTRVGKSA 312 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg--~I~iwD~r~~~~~ 312 (358)
+|++..++++.+.++. |++||+.++.. ..+..+.......+|+|++. .++..+ .+| .|.+||+..+ .
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-----~~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~--~ 325 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTT-----TRLTDSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGS--N 325 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCce-----EEccCCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCC--C
Confidence 9999833456666665 77778765322 33444555667789999998 555555 344 5777787653 2
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEeCC---CCEEEEeCCCC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLL 353 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs~D---g~i~iwDlr~~ 353 (358)
...+..+...+....|+|++ ..|+..+.+ ..|.+||+...
T Consensus 326 ~~~lt~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 326 PRRISFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred eEEeecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCC
Confidence 34444445567778999999 666555432 36788887543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-10 Score=105.53 Aligned_cols=167 Identities=15% Similarity=0.262 Sum_probs=121.4
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC-----CCCeEEEEeC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-----KDEGYAIDWN 238 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~l~~s 238 (358)
-.+++|+|..++-+ .+||+|+.+|.|..||.+....... ......+..| ...|++|.|+
T Consensus 174 ~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~---------------l~~~~~v~s~pg~~~~~svTal~F~ 237 (703)
T KOG2321|consen 174 DSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGT---------------LDAASSVNSHPGGDAAPSVTALKFR 237 (703)
T ss_pred ccccceeeeecCcc-ceEEecccCceEEEecchhhhhhee---------------eecccccCCCccccccCcceEEEec
Confidence 34899999999988 7999999999999999987321110 0011111122 2369999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC-CEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
.+|- .+++|...|.|.|||+++..... ..-.+...+|..+.|.+.+. +.++|+ ....++|||-.+++ ++..+.
T Consensus 238 d~gL-~~aVGts~G~v~iyDLRa~~pl~---~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk-~~asiE 311 (703)
T KOG2321|consen 238 DDGL-HVAVGTSTGSVLIYDLRASKPLL---VKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGK-PMASIE 311 (703)
T ss_pred CCce-eEEeeccCCcEEEEEcccCCcee---ecccCCccceeeecccccCCCceEEec-chHHhhhcccccCC-ceeecc
Confidence 9987 99999999999999999854432 22233457899999987633 245544 35789999999864 555554
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
. ...+|.+++-|++ -+++++-.++.+..|=+..+.
T Consensus 312 p-t~~lND~C~~p~s-Gm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 312 P-TSDLNDFCFVPGS-GMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred c-cCCcCceeeecCC-ceEEEecCCCcceeEEccccC
Confidence 3 4459999999998 899999888888777665544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-09 Score=102.13 Aligned_cols=161 Identities=12% Similarity=0.114 Sum_probs=102.1
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCc--EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
..+.+.+...+|+|++..++++.+.+|. |++||+.. .....+..+........|+|
T Consensus 242 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~----------------------~~~~~Lt~~~~~~~~~~~sp 299 (435)
T PRK05137 242 GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS----------------------GTTTRLTDSPAIDTSPSYSP 299 (435)
T ss_pred ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC----------------------CceEEccCCCCccCceeEcC
Confidence 3466778889999999666667777766 66667655 22334545555567789999
Q ss_pred CCCCeEEEEe-CCC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC---CcEEEEECCCCCCee
Q 018322 240 ITTGRLVTGD-CNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD---GHIAIWDTRVGKSAL 313 (358)
Q Consensus 240 ~~~~~l~sgs-~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D---g~I~iwD~r~~~~~~ 313 (358)
++. +|+..+ .+| .|++||+..+.. ..+..+...+....|+|++. .++..+.+ ..|.+||+..+. .
T Consensus 300 DG~-~i~f~s~~~g~~~Iy~~d~~g~~~-----~~lt~~~~~~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~~~~--~ 370 (435)
T PRK05137 300 DGS-QIVFESDRSGSPQLYVMNADGSNP-----RRISFGGGRYSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPDGSG--E 370 (435)
T ss_pred CCC-EEEEEECCCCCCeEEEEECCCCCe-----EEeecCCCcccCeEECCCCC-EEEEEEcCCCceEEEEEECCCCc--e
Confidence 998 666555 333 677778754221 22333345567789999999 66555443 368888875532 2
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCC-----CCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~D-----g~i~iwDlr~~~ 354 (358)
..+. ....+..++|+|++..+++++... ..|.++|+....
T Consensus 371 ~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 371 RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 2232 233567889999994444444333 257888886543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.8e-10 Score=106.30 Aligned_cols=165 Identities=15% Similarity=0.071 Sum_probs=104.1
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeC-C--CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWAD-T--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~-d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+.+...+|+|++ ..||..+. + ..|++||+.. ... ..+........+.+|+
T Consensus 192 ~~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~---------------------g~~-~~l~~~~g~~~~~~~S 248 (427)
T PRK02889 192 LSSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLAT---------------------GRR-RVVANFKGSNSAPAWS 248 (427)
T ss_pred ccCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCC---------------------CCE-EEeecCCCCccceEEC
Confidence 3577889999999999 45555443 2 3599999976 222 2232333455689999
Q ss_pred CCCCCeEE-EEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 239 PITTGRLV-TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 239 ~~~~~~l~-sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
|++. .|+ +.+.+|...||.+...+... ..+..+...+....|+|+++.+++++..+|...||.+.........+.
T Consensus 249 PDG~-~la~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 249 PDGR-TLAVALSRDGNSQIYTVNADGSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCCC-EEEEEEccCCCceEEEEECCCCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 9998 655 66778887777654322211 334445555667899999994444444457777776543222223333
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCC---CEEEEeCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDG---TFSIHDLRLLK 354 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg---~i~iwDlr~~~ 354 (358)
.+.......+|+|+| .+|+..+.++ .|.+||+.+.+
T Consensus 325 ~~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 325 FTGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred cCCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCC
Confidence 233334467999999 6776655443 69999997654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-10 Score=99.80 Aligned_cols=161 Identities=17% Similarity=0.303 Sum_probs=114.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.-.+..++|++.- ..+|++..|-.|+||+-+. ..+...-...+..|+||+|-|.+...
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~kss---------------------t~pt~Lks~sQrnvtclawRPlsase 155 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS---------------------TCPTKLKSVSQRNVTCLAWRPLSASE 155 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCC---------------------CCCceecchhhcceeEEEeccCCcce
Confidence 4567788999855 6788899999999999766 12222222345689999999998756
Q ss_pred EEEEeCCCcEEEEecCCCCCccc----------CCCccccCCCcEEEEEECCCCCCEEEEEEC-CCcEEEEECCCCCCee
Q 018322 245 LVTGDCNSCIYLWEPASDATWNV----------DPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSAL 313 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~----------~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~ 313 (358)
|+.|+ .+.|++|.......... ......+| ..|++++|.+++. .+++++. |..|+|||..++.. +
T Consensus 156 lavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~-~ 231 (445)
T KOG2139|consen 156 LAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQK-I 231 (445)
T ss_pred eeeee-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCc-c
Confidence 66666 66799998754221110 01123345 6899999999998 7777764 78999999998532 2
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.-.....+.+.-+.|+|++ .+|..+.-|+..++|...+
T Consensus 232 pL~~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 232 PLIPKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred cccccCCCceeeEEEcCCC-CEEEEecccceeeeehhcc
Confidence 2122345568899999999 7787888999999996543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=100.59 Aligned_cols=142 Identities=17% Similarity=0.114 Sum_probs=110.6
Q ss_pred eeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEE
Q 018322 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 247 (358)
..++.|++.+ .-++++-.+|.+.+-+.... ..+.++.++.|.-+.+...|+...++++.+
T Consensus 124 ~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~-------------------~le~vq~wk~He~E~Wta~f~~~~pnlvyt 183 (339)
T KOG0280|consen 124 ALSLDISTSG-TKIFVSDSRGSISGVYETEM-------------------VLEKVQTWKVHEFEAWTAKFSDKEPNLVYT 183 (339)
T ss_pred eeEEEeeccC-ceEEEEcCCCcEEEEeccee-------------------eeeecccccccceeeeeeecccCCCceEEe
Confidence 3456667766 45677777788874444331 234456788999999999999888889999
Q ss_pred EeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEE
Q 018322 248 GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVIS 327 (358)
Q Consensus 248 gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~ 327 (358)
|+.|+.+..||+|.++.++ -+....|+..|.+|.-+|..++++++|+.|-.|++||+|+..+|+..-. -.+.|..|.
T Consensus 184 GgDD~~l~~~D~R~p~~~i--~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~ 260 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRIPKTFI--WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIK 260 (339)
T ss_pred cCCCceEEEEEecCCccee--eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEE
Confidence 9999999999999666544 2345669999999999998888999999999999999997666665432 346799999
Q ss_pred EeCCC
Q 018322 328 WNRLA 332 (358)
Q Consensus 328 ~~p~~ 332 (358)
++|..
T Consensus 261 ~~p~~ 265 (339)
T KOG0280|consen 261 HHPEI 265 (339)
T ss_pred ecchh
Confidence 99965
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.9e-12 Score=120.99 Aligned_cols=120 Identities=26% Similarity=0.457 Sum_probs=105.8
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (358)
+.+..+.||...|||..|...|. ++++|+.|..++||...+. .+ .....||.+.|++++.+.... ++|++|.|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~-~~---lAs~rGhs~ditdlavs~~n~-~iaaaS~D~ 254 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETA-RC---LASCRGHSGDITDLAVSSNNT-MIAAASNDK 254 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccch-hh---hccCCCCccccchhccchhhh-hhhhcccCc
Confidence 34456779999999999999998 9999999999999997663 32 367889999999999988776 999999999
Q ss_pred cEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.|++|-++.+ .++..+.+|.+.|++|+|+|-. +.+.||++++||.|
T Consensus 255 vIrvWrl~~~-~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 255 VIRVWRLPDG-APVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR 300 (1113)
T ss_pred eEEEEecCCC-chHHHHhccccceeeeccCccc-----cCCCCCceEecccc
Confidence 9999999985 5888889999999999999944 77899999999998
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=98.35 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=96.9
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
......|.++|..+.|.+.- ..=++|+.+-.+..|.++....+.. ......+ -...+..+..
T Consensus 198 ~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq---------------~~~e~~l--knpGv~gvrI 259 (323)
T KOG0322|consen 198 ESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQ---------------IRKEITL--KNPGVSGVRI 259 (323)
T ss_pred ccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCccc---------------ccceEEe--cCCCccceEE
Confidence 34556799999999998766 3456778888899999987432220 1111112 2236778899
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
-|+++ .|||++.|++|++|..++... ...+.-|.+.|++++|+|+.+ ++|+++.|+.|.+|++
T Consensus 260 RpD~K-IlATAGWD~RiRVyswrtl~p----LAVLkyHsagvn~vAfspd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 260 RPDGK-ILATAGWDHRIRVYSWRTLNP----LAVLKYHSAGVNAVAFSPDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred ccCCc-EEeecccCCcEEEEEeccCCc----hhhhhhhhcceeEEEeCCCCc-hhhhccCCceEEeeec
Confidence 99999 999999999999999988544 345677999999999999977 9999999999999986
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.1e-10 Score=108.39 Aligned_cols=194 Identities=16% Similarity=0.195 Sum_probs=128.2
Q ss_pred EEEecCCCceeEEEEcCCCC--cEEEEEeCCCcEEEEeCCCCccc--cc----cccccc-------------cCC-----
Q 018322 159 LRKVAHQGCVNRIRAMTQNP--HICASWADTGHVQVWDLRSHLNA--LA----ESETIV-------------GQG----- 212 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~--~~lat~s~dg~V~iwd~~~~~~~--~~----~~~~~~-------------~~~----- 212 (358)
..+..|..++..+.+.|..+ .++.+++.+|.|++||....... +. ...... ...
T Consensus 51 ~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~ 130 (792)
T KOG1963|consen 51 TSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSIL 130 (792)
T ss_pred hhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceee
Confidence 36678999999999998875 56779999999999998762110 00 000000 000
Q ss_pred ------CCCCCCCCCcEEE--------cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCc
Q 018322 213 ------APQVSNQSPLVKF--------GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS 278 (358)
Q Consensus 213 ------~~~~~~~~~~~~~--------~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~ 278 (358)
.......-.+.++ ..|.. -.+|..++.+. +.+. -.+..+++|..............-..|+-.
T Consensus 131 ~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge-~~~i-~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~ 207 (792)
T KOG1963|consen 131 TTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGE-FKGI-VHMCKIHIYFVPKHTKHTSSRDITVHHTFN 207 (792)
T ss_pred eecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCce-EEEE-EEeeeEEEEEecccceeeccchhhhhhccc
Confidence 0000000000111 12211 24677777765 3333 346688999987744211111222347777
Q ss_pred EEEEEECCCCCCEEEEEECCCcEEEEECCC---CCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRV---GKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~---~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
++++++||+++ ++|++..||.|.+|.--. .......++.|...|++++|+++| .+|+|||..|.+-+|.+.+.++
T Consensus 208 ~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~k 285 (792)
T KOG1963|consen 208 ITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKK 285 (792)
T ss_pred ceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCc
Confidence 99999999999 999999999999994322 112456678899999999999999 8999999999999999999886
Q ss_pred CC
Q 018322 356 RL 357 (358)
Q Consensus 356 ~l 357 (358)
.+
T Consensus 286 qf 287 (792)
T KOG1963|consen 286 QF 287 (792)
T ss_pred cc
Confidence 54
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.1e-09 Score=100.64 Aligned_cols=159 Identities=12% Similarity=0.069 Sum_probs=100.5
Q ss_pred cCCCceeEEEEcCCCCcEEEEEe---CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWA---DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s---~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.+.+.+...+|+|++. .||..+ ....|++|++.... ...+..+.+ ...++.|+|
T Consensus 196 ~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~-------------------~~~l~~~~~---~~~~~~~SP 252 (429)
T PRK03629 196 RSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGA-------------------VRQVASFPR---HNGAPAFSP 252 (429)
T ss_pred cCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCC-------------------eEEccCCCC---CcCCeEECC
Confidence 4677899999999995 454433 23578999986510 112222233 344689999
Q ss_pred CCCCeEEE-EeCCC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-CCcEEEE--ECCCCCCee
Q 018322 240 ITTGRLVT-GDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIW--DTRVGKSAL 313 (358)
Q Consensus 240 ~~~~~l~s-gs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iw--D~r~~~~~~ 313 (358)
++. .|+. .+.+| .|++||+.++ .. ..+..+...+....|+|++. .|+.++. ++...|| |+..+ ..
T Consensus 253 DG~-~La~~~~~~g~~~I~~~d~~tg-~~----~~lt~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~d~~~g--~~ 323 (429)
T PRK03629 253 DGS-KLAFALSKTGSLNLYVMDLASG-QI----RQVTDGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKVNINGG--AP 323 (429)
T ss_pred CCC-EEEEEEcCCCCcEEEEEECCCC-CE----EEccCCCCCcCceEECCCCC-EEEEEeCCCCCceEEEEECCCC--Ce
Confidence 998 6654 44455 5888998763 22 22333445678899999998 6655554 4555555 55543 23
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEe-CC--CCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGS-DD--GTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs-~D--g~i~iwDlr~~~ 354 (358)
..+..+........|+|+| ..|+..+ .+ ..|.+||+.+.+
T Consensus 324 ~~lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 324 QRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred EEeecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCC
Confidence 3444444556678999999 6665544 33 358889987664
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.5e-09 Score=100.43 Aligned_cols=154 Identities=13% Similarity=0.098 Sum_probs=95.9
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.+.+..++|+|++..++.+.+.+| .|++||+.. .. ...+..+...+....|+|++.
T Consensus 242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t---------------------g~-~~~lt~~~~~~~~~~wSPDG~ 299 (429)
T PRK03629 242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---------------------GQ-IRQVTDGRSNNTEPTWFPDSQ 299 (429)
T ss_pred CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC---------------------CC-EEEccCCCCCcCceEECCCCC
Confidence 344556899999965555555555 488888865 12 223333444677899999998
Q ss_pred CeEEEEeC-CCcEEEE--ecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-C--CcEEEEECCCCCCeeEEE
Q 018322 243 GRLVTGDC-NSCIYLW--EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-D--GHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 243 ~~l~sgs~-dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-D--g~I~iwD~r~~~~~~~~~ 316 (358)
.|+.++. ++...|| ++..+ .. ..+..+...+....|+|++. .++..+. + ..|.+||+.++. ...+
T Consensus 300 -~I~f~s~~~g~~~Iy~~d~~~g-~~----~~lt~~~~~~~~~~~SpDG~-~Ia~~~~~~g~~~I~~~dl~~g~--~~~L 370 (429)
T PRK03629 300 -NLAYTSDQAGRPQVYKVNINGG-AP----QRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGG--VQVL 370 (429)
T ss_pred -EEEEEeCCCCCceEEEEECCCC-Ce----EEeecCCCCccCEEECCCCC-EEEEEEccCCCceEEEEECCCCC--eEEe
Confidence 6765554 4555555 55432 21 22333344566789999998 5555443 3 358889988753 2333
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCC---EEEEeCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGT---FSIHDLR 351 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~---i~iwDlr 351 (358)
... .......|+|+| .+|+.++.++. +.++++.
T Consensus 371 t~~-~~~~~p~~SpDG-~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 371 TDT-FLDETPSIAPNG-TMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred CCC-CCCCCceECCCC-CEEEEEEcCCCceEEEEEECC
Confidence 322 223467899999 77777776653 6777764
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-09 Score=101.58 Aligned_cols=159 Identities=11% Similarity=0.106 Sum_probs=96.9
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
..+.+...+|+|++..++++.+.+|...||.+... ......+..+........|+|++.
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~--------------------~~~~~~lt~~~~~~~~~~wSpDG~- 296 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD--------------------GSGLRRLTQSSGIDTEPFFSPDGR- 296 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECC--------------------CCCcEECCCCCCCCcCeEEcCCCC-
Confidence 45667789999999666667788888777776441 122334444544556788999998
Q ss_pred eEEEEe-CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC---cEEEEECCCCCCeeEEEecC
Q 018322 244 RLVTGD-CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG---HIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 244 ~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg---~I~iwD~r~~~~~~~~~~~h 319 (358)
+|+..+ .+|...||.+...+... ..+..+.......+|+|++. .++..+.++ .|.+||+.++. ...+..+
T Consensus 297 ~l~f~s~~~g~~~Iy~~~~~~g~~---~~lt~~g~~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~--~~~lt~~ 370 (427)
T PRK02889 297 SIYFTSDRGGAPQIYRMPASGGAA---QRVTFTGSYNTSPRISPDGK-LLAYISRVGGAFKLYVQDLATGQ--VTALTDT 370 (427)
T ss_pred EEEEEecCCCCcEEEEEECCCCce---EEEecCCCCcCceEECCCCC-EEEEEEccCCcEEEEEEECCCCC--eEEccCC
Confidence 665444 45677777664322211 11111222344678999999 666655544 69999998753 2233322
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCC--EEEEeC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGT--FSIHDL 350 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~--i~iwDl 350 (358)
......+|+|++..++++....|. +.+.++
T Consensus 371 -~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 371 -TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred -CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 334678999999444444434443 555555
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=120.83 Aligned_cols=156 Identities=18% Similarity=0.314 Sum_probs=124.3
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
+++...+..+. ..|++++|+.+| +.+..+..||.+.+|.+.. ++....+.|.....
T Consensus 2241 ~~v~~~rt~g~-s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~p----------------------k~~~s~qchnk~~~ 2296 (2439)
T KOG1064|consen 2241 QQVVCFRTAGN-SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASP----------------------KPYTSWQCHNKALS 2296 (2439)
T ss_pred CeEEEeeccCc-chhhhhhhcccC-CceeeeccCCceeecccCC----------------------cceeccccCCcccc
Confidence 55555555555 999999999999 6788889999999999875 67777888988888
Q ss_pred EEEeCCCCCCeEEEEe---CCCcEEEEecCCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 234 AIDWNPITTGRLVTGD---CNSCIYLWEPASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs---~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
.+.|-. . .+++++ .++.+++||..-.+. +. .-..|.+.++++++.|... +|++|+.+|.|++||+|.
T Consensus 2297 Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~----v~~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rq- 2367 (2439)
T KOG1064|consen 2297 DFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSL----VHTCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQ- 2367 (2439)
T ss_pred ceeeee--h-hhhccccCCCCCcccchhcccCcccce----eeeecCCCceEEEEcCcce-EEEecCCcCcEEEeehHH-
Confidence 888866 3 566653 568999999765333 22 1277999999999999999 999999999999999998
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
++..+++.+ +. .. .++++|+..|.++||++..+
T Consensus 2368 rql~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2368 RQLRHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred HHHHHHhhh---------hh-hh-heeeccCcccceEEEEcccc
Confidence 345555543 44 33 79999999999999999876
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.1e-09 Score=97.23 Aligned_cols=170 Identities=12% Similarity=0.159 Sum_probs=105.1
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
+......+.++|++..++++...++.|.+||+.... .+... ......... ......+.|+|++.
T Consensus 124 ~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g-~l~~~-------------~~~~~~~~~-g~~p~~~~~~pdg~- 187 (330)
T PRK11028 124 GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG-HLVAQ-------------EPAEVTTVE-GAGPRHMVFHPNQQ- 187 (330)
T ss_pred CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC-ccccc-------------CCCceecCC-CCCCceEEECCCCC-
Confidence 334567788999996676777788999999997621 11000 000011111 23456799999998
Q ss_pred eEEEEeC-CCcEEEEecCCC-CCcccCCCcccc------CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 244 RLVTGDC-NSCIYLWEPASD-ATWNVDPNPFIG------HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 244 ~l~sgs~-dg~I~lwd~~~~-~~~~~~~~~~~~------h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
+|++++. ++.|.+|++... +... ....+.. +......+.++|+++.++++...++.|.+|++...... ..
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~ 265 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIE-CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LS 265 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEE-EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EE
Confidence 8777765 899999999742 2211 0111111 12233468999999944444456899999999653221 12
Q ss_pred EecC---CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 316 FKAH---NADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 316 ~~~h---~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+..+ ......++|+|++..++++...+++|.+|++.
T Consensus 266 ~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 266 FEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2111 22456789999994444455558999999875
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-10 Score=101.13 Aligned_cols=139 Identities=18% Similarity=0.272 Sum_probs=114.2
Q ss_pred CceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 166 GCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 166 ~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
-.++.++|-+.. +..|||++.-+.|++||... +..|+..|.--..+++++...|.+. +
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~--------------------qRRPV~~fd~~E~~is~~~l~p~gn-~ 261 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRH--------------------QRRPVAQFDFLENPISSTGLTPSGN-F 261 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcc--------------------cCcceeEeccccCcceeeeecCCCc-E
Confidence 456678887762 37899999999999999997 5789999988889999999999998 9
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeE
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (358)
+++|..-|.+..+|++.+... ...+.+.+++|.+|..+|+++ ++|+|+-|..|||+|+.+ ..++..+. -.+.++
T Consensus 262 Iy~gn~~g~l~~FD~r~~kl~---g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt-rkll~kvY-vKs~lt 335 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRGGKLL---GCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT-RKLLHKVY-VKSRLT 335 (412)
T ss_pred EEEecccchhheecccCceee---ccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc-chhhhhhh-hhcccc
Confidence 999999999999999874332 245788899999999999999 999999999999999998 34443332 234567
Q ss_pred EEEEeCC
Q 018322 325 VISWNRL 331 (358)
Q Consensus 325 ~i~~~p~ 331 (358)
+|.+.++
T Consensus 336 ~il~~~~ 342 (412)
T KOG3881|consen 336 FILLRDD 342 (412)
T ss_pred EEEecCC
Confidence 7777554
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.4e-10 Score=98.25 Aligned_cols=260 Identities=17% Similarity=0.205 Sum_probs=159.2
Q ss_pred HHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCC
Q 018322 56 AYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDS 135 (358)
Q Consensus 56 ~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~ 135 (358)
-+|+|.+...+=+..-+.|++++.+ ..|++.| .+..|.+|++..-...+... .+|... +-..
T Consensus 74 EFDYLkSleieEKinkIrw~~~~n~---------a~FLlst-----NdktiKlWKi~er~~k~~~~-~~~~~~---~~~~ 135 (433)
T KOG1354|consen 74 EFDYLKSLEIEEKINKIRWLDDGNL---------AEFLLST-----NDKTIKLWKIRERGSKKEGY-NLPEEG---PPGT 135 (433)
T ss_pred ccchhhhhhhhhhhhhceecCCCCc---------cEEEEec-----CCcceeeeeeeccccccccc-cccccC---CCCc
Confidence 3578888888889999999998632 3566666 34489999996322221000 000000 0000
Q ss_pred CCC--CCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCC
Q 018322 136 ESS--DSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGA 213 (358)
Q Consensus 136 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 213 (358)
.-. -.-.-.-+... +..|.. .-.-+|+-.||+|.++.+.. .+.+ ++|-.|.+|++.....++...+
T Consensus 136 ~~~lr~p~~~~~~~~v--ea~prR-v~aNaHtyhiNSIS~NsD~E-t~lS-ADdLRINLWnlei~d~sFnIVD------- 203 (433)
T KOG1354|consen 136 ITSLRLPVEGRHDLEV--EASPRR-VYANAHTYHINSISVNSDKE-TFLS-ADDLRINLWNLEIIDQSFNIVD------- 203 (433)
T ss_pred cceeeceeecccccee--eeeeee-eccccceeEeeeeeecCccc-eEee-ccceeeeeccccccCCceeEEE-------
Confidence 000 00000000000 001111 12345899999999999884 4444 5778999999977332221110
Q ss_pred CCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccC------------CCccccCCCcEEE
Q 018322 214 PQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD------------PNPFIGHSASVED 281 (358)
Q Consensus 214 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~------------~~~~~~h~~~V~~ 281 (358)
.+|.. +..-+.-|++..|+|...+.|+-.+..|+|+|.|++...-+... ..-|..--++|.+
T Consensus 204 -----IKP~n-mEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISD 277 (433)
T KOG1354|consen 204 -----IKPAN-MEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISD 277 (433)
T ss_pred -----ccccC-HHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhc
Confidence 11110 11112357889999998778888888999999999853211100 1113334578999
Q ss_pred EEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC------------C---eEEEEEeCCCCcEEEEEeCCCCEE
Q 018322 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA------------D---VNVISWNRLASCLLASGSDDGTFS 346 (358)
Q Consensus 282 v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~------------~---V~~i~~~p~~~~~lasgs~Dg~i~ 346 (358)
++|+++|+ ++++-.. -+|+|||+.....++.++..|.. . -..++|+-++ ..++||+....++
T Consensus 278 vKFs~sGr-yilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~fr 354 (433)
T KOG1354|consen 278 VKFSHSGR-YILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFR 354 (433)
T ss_pred eEEccCCc-EEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEE
Confidence 99999999 7766543 69999999776678887776642 2 2457899888 8999999999999
Q ss_pred EEeCCCCC
Q 018322 347 IHDLRLLK 354 (358)
Q Consensus 347 iwDlr~~~ 354 (358)
++++..+.
T Consensus 355 vf~~~~gs 362 (433)
T KOG1354|consen 355 VFNLARGS 362 (433)
T ss_pred EecCCCCc
Confidence 99976554
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-09 Score=106.08 Aligned_cols=213 Identities=16% Similarity=0.183 Sum_probs=141.5
Q ss_pred ccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEec
Q 018322 84 NEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVA 163 (358)
Q Consensus 84 ~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (358)
..-+|+-+||.|+ .++.|.||++..+.+.. ..-.-+.+...
T Consensus 1056 ~s~~~~s~FvsgS-----~DGtVKvW~~~k~~~~~----------------------------------~s~rS~ltys~ 1096 (1431)
T KOG1240|consen 1056 VSSEHTSLFVSGS-----DDGTVKVWNLRKLEGEG----------------------------------GSARSELTYSP 1096 (1431)
T ss_pred ecCCCCceEEEec-----CCceEEEeeehhhhcCc----------------------------------ceeeeeEEEec
Confidence 3556777888887 67799999885432210 01122233444
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC--CeEEEEeCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~ 241 (358)
-...+.++..++.+ ..+|.++.||.|++.++........ ..........+.. -+...++....
T Consensus 1097 ~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~--------------~~~~~ri~n~~~~g~vv~m~a~~~~~ 1161 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKR--------------VATQVRIPNLKKDGVVVSMHAFTAIV 1161 (1431)
T ss_pred cCCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccc--------------eeeeeecccccCCCceEEeecccccc
Confidence 56889999999988 7889999999999999987311100 0111111112221 22233333333
Q ss_pred CC-eEEEEeCCCcEEEEecCCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-ec
Q 018322 242 TG-RLVTGDCNSCIYLWEPASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KA 318 (358)
Q Consensus 242 ~~-~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~ 318 (358)
.. .|+.+..-+.|..||++.... |. .......+.|++++.+|.+. ++++|+..|.+.+||+|-. .++.+. ..
T Consensus 1162 ~S~~lvy~T~~~~iv~~D~r~~~~~w~---lk~~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~-~~i~sw~~P 1236 (1431)
T KOG1240|consen 1162 QSHVLVYATDLSRIVSWDTRMRHDAWR---LKNQLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFR-VPILSWEHP 1236 (1431)
T ss_pred cceeEEEEEeccceEEecchhhhhHHh---hhcCccccceeEEEecCCce-EEEEecCCceEEEEEeecC-ceeecccCc
Confidence 22 778888899999999987432 22 22333458899999999998 9999999999999999984 566655 44
Q ss_pred CCCCeEEEEEeCCCC--cEEE-EEe-CCCCEEEEeCCCCCC
Q 018322 319 HNADVNVISWNRLAS--CLLA-SGS-DDGTFSIHDLRLLKV 355 (358)
Q Consensus 319 h~~~V~~i~~~p~~~--~~la-sgs-~Dg~i~iwDlr~~~~ 355 (358)
+..+|+.+..+|.-+ ...+ +|+ ..+.|.+|++.++..
T Consensus 1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 567888888877543 3444 444 578999999988754
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.8e-09 Score=99.61 Aligned_cols=156 Identities=14% Similarity=0.151 Sum_probs=97.2
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
+.+....++|+|++..++++.+.+| .|++||+... ....+..+.......+|+|++
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g----------------------~~~~lt~~~~~~~~~~~spDG 303 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR----------------------QLTRLTNHFGIDTEPTWAPDG 303 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC----------------------CeEECccCCCCccceEECCCC
Confidence 4555667899999966666666666 5888888651 123344454455678999999
Q ss_pred CCeEEEEe-CCCc--EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-C--cEEEEECCCCCCeeEE
Q 018322 242 TGRLVTGD-CNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-G--HIAIWDTRVGKSALTS 315 (358)
Q Consensus 242 ~~~l~sgs-~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g--~I~iwD~r~~~~~~~~ 315 (358)
. +|+.++ .+|. |+++++..+ .. ..+..+......++|+|++. .++..+.+ + .|.+||+.++. ...
T Consensus 304 ~-~l~f~sd~~g~~~iy~~dl~~g-~~----~~lt~~g~~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g~--~~~ 374 (433)
T PRK04922 304 K-SIYFTSDRGGRPQIYRVAASGG-SA----ERLTFQGNYNARASVSPDGK-KIAMVHGSGGQYRIAVMDLSTGS--VRT 374 (433)
T ss_pred C-EEEEEECCCCCceEEEEECCCC-Ce----EEeecCCCCccCEEECCCCC-EEEEEECCCCceeEEEEECCCCC--eEE
Confidence 8 666555 4555 556666442 21 11222223345689999999 55554433 2 69999997743 223
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeC---CCCEEEEeCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSD---DGTFSIHDLRL 352 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~---Dg~i~iwDlr~ 352 (358)
+. +........|+|++ .+|+..+. .+.|.++++..
T Consensus 375 Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 375 LT-PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CC-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCC
Confidence 33 33344567999999 55554443 23678888854
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.1e-09 Score=99.36 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=105.3
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCC---CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADT---GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+...+...+|+|++ ..||..+.. ..|++||+... .. ..+..+.....+++|+
T Consensus 186 ~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g---------------------~~-~~~~~~~~~~~~~~~s 242 (417)
T TIGR02800 186 TRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATG---------------------QR-EKVASFPGMNGAPAFS 242 (417)
T ss_pred ecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCC---------------------CE-EEeecCCCCccceEEC
Confidence 3566778899999999 455554433 47999998761 11 2233344556779999
Q ss_pred CCCCCeEEEEeCCC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-CC--cEEEEECCCCCCee
Q 018322 239 PITTGRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DG--HIAIWDTRVGKSAL 313 (358)
Q Consensus 239 ~~~~~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg--~I~iwD~r~~~~~~ 313 (358)
|++..++++.+.++ .|++|++.++.. ..+..+.......+|+|++. .|+.++. .+ .|.++|+..+. .
T Consensus 243 pDg~~l~~~~~~~~~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~s~dg~-~l~~~s~~~g~~~iy~~d~~~~~--~ 314 (417)
T TIGR02800 243 PDGSKLAVSLSKDGNPDIYVMDLDGKQL-----TRLTNGPGIDTEPSWSPDGK-SIAFTSDRGGSPQIYMMDADGGE--V 314 (417)
T ss_pred CCCCEEEEEECCCCCccEEEEECCCCCE-----EECCCCCCCCCCEEECCCCC-EEEEEECCCCCceEEEEECCCCC--E
Confidence 99983444555554 588888866322 22333444455678999998 5554443 44 57777877642 3
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCC---CEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDG---TFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg---~i~iwDlr~~~ 354 (358)
..+..+...+..+.|+|++ .+|+.++.++ .|.+||+.+..
T Consensus 315 ~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 315 RRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred EEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCC
Confidence 4454456667788999999 6776666654 78899987643
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.4e-10 Score=99.26 Aligned_cols=190 Identities=15% Similarity=0.149 Sum_probs=125.8
Q ss_pred CCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCC--------------CCCCCCCcEEE-cC
Q 018322 164 HQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAP--------------QVSNQSPLVKF-GG 227 (358)
Q Consensus 164 H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~-~~ 227 (358)
-...|+.|+|.+++ ...+...+.|.+|++|-+................... ......|...+ .+
T Consensus 83 ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa 162 (433)
T KOG1354|consen 83 IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA 162 (433)
T ss_pred hhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc
Confidence 45779999999876 3456667899999999997644333111110000000 00122333333 35
Q ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc--ccCC--CccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW--NVDP--NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~--~~~~--~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
|.--|.+|.++.+.. .++|++ |-.|.||.+.-..+. ++.+ ..+..-+.-|++..|+|...++|+-.+..|+|+|
T Consensus 163 HtyhiNSIS~NsD~E-t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 163 HTYHINSISVNSDKE-TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ceeEeeeeeecCccc-eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 777899999999998 888887 889999998643221 1111 1222234568888999999999999999999999
Q ss_pred EECCCCCCeeE-----EE----------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 304 WDTRVGKSALT-----SF----------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 304 wD~r~~~~~~~-----~~----------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
.|+|...-|-. .. ..--+.|..+.|++.| ++|++-+. -+|++||+..-.+|+
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~~pv 307 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEAKPV 307 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccccCCcc
Confidence 99996321111 00 1111357889999999 89988654 589999997766654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=107.63 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=100.6
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
++.+|.|.|.++.++-++ .++|+.|+|.++++|.+... .....+.-+|...++.+.+.|
T Consensus 170 ~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~--------------------~~~~~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSR--------------------EVLGCTGFGHSARVWACCFLP 228 (967)
T ss_pred eecccCCceEEEEEccCC-cEEEEEecCcceeeeecccc--------------------cccCcccccccceeEEEEecc
Confidence 778999999999999999 89999999999999999882 222245669999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCC-CcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
. +++|++.|.+.++|+..- .. ...+.+|. ..+..+...+... ..+|++.||.+++||+..
T Consensus 229 n---~i~t~gedctcrvW~~~~-~~----l~~y~~h~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 229 N---RIITVGEDCTCRVWGVNG-TQ----LEVYDEHSGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c---eeEEeccceEEEEEeccc-ce----ehhhhhhhhcceeEEEEcCCce-EEEeeccCcchhhhhhhc
Confidence 6 899999999999997643 22 23677775 4688999988877 999999999999999854
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-09 Score=95.46 Aligned_cols=165 Identities=21% Similarity=0.214 Sum_probs=114.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
..++.+..++.+ .++|.+.......++++..... ..+++..+.... .-+++.+..... ..
T Consensus 63 ~a~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~-----------------~~kl~~~~~v~~-~~~ai~~~~~~~-sv 122 (390)
T KOG3914|consen 63 LAPALVLTSDSG-RLVAVATSSKQRAVFDYRENPK-----------------GAKLLDVSCVPK-RPTAISFIREDT-SV 122 (390)
T ss_pred ccccccccCCCc-eEEEEEeCCCceEEEEEecCCC-----------------cceeeeEeeccc-Ccceeeeeeccc-eE
Confidence 344455666767 7999988888888888876221 022233332222 334555555554 45
Q ss_pred EEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-ecCCCCeE
Q 018322 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNADVN 324 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~ 324 (358)
..+...|-++.+|+.+...+. .....||-+.+++|+|+|+.+ +++++..|..|||-..... ..+..+ -+|..-|.
T Consensus 123 ~v~dkagD~~~~di~s~~~~~--~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~-f~IesfclGH~eFVS 198 (390)
T KOG3914|consen 123 LVADKAGDVYSFDILSADSGR--CEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPAT-FVIESFCLGHKEFVS 198 (390)
T ss_pred EEEeecCCceeeeeecccccC--cchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcc-cchhhhccccHhhee
Confidence 555555555555544322112 367889999999999999998 9999999999999776653 234444 67999999
Q ss_pred EEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 325 VISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
.++.-++. .|+|||.|++|++||+++++..
T Consensus 199 ~isl~~~~--~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 199 TISLTDNY--LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eeeeccCc--eeeecCCCCcEEEEecccCCcc
Confidence 99998765 6899999999999999998754
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.2e-09 Score=101.91 Aligned_cols=167 Identities=14% Similarity=0.181 Sum_probs=127.2
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
..|...+++.+++|.+ .++|+|..||+|.+|.-..... .......+.-|..+|.+|+|+++|
T Consensus 202 ~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~-----------------~~~t~t~lHWH~~~V~~L~fS~~G 263 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSD-----------------DSETCTLLHWHHDEVNSLSFSSDG 263 (792)
T ss_pred hhhcccceeEEecccc-ceEEEeccCCcEEEEecccccc-----------------ccccceEEEecccccceeEEecCC
Confidence 3477779999999999 8999999999999997543100 123345678899999999999999
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC--CeeEEEe--
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SALTSFK-- 317 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~~~~~~~-- 317 (358)
. +|+||+..|.+.+|.+.++++ +-+..-.++|..+.|+|++. +.+.+..|..|.+....+.. ..+..+.
T Consensus 264 ~-~LlSGG~E~VLv~Wq~~T~~k-----qfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~ 336 (792)
T KOG1963|consen 264 A-YLLSGGREGVLVLWQLETGKK-----QFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPP 336 (792)
T ss_pred c-eEeecccceEEEEEeecCCCc-----ccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCC
Confidence 8 999999999999999988553 23444578999999999998 88888889999998764321 1111111
Q ss_pred ------cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 318 ------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 318 ------~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
...+-.+.++++|.- ..++-.+..|.|.+||+-+-+
T Consensus 337 ~~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~ 378 (792)
T KOG1963|consen 337 TPSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDS 378 (792)
T ss_pred CccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccc
Confidence 123446778899955 677888899999999987643
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-09 Score=113.80 Aligned_cols=158 Identities=17% Similarity=0.324 Sum_probs=126.0
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc--CCCCCeEEEEeCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~ 241 (358)
|-..|.|+.-+|..+ +.+||+.||.|++|.... .+++..+. |. ..++.+.|+..|
T Consensus 2207 ~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~---------------------~~~v~~~rt~g~-s~vtr~~f~~qG 2263 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGH---------------------GQQVVCFRTAGN-SRVTRSRFNHQG 2263 (2439)
T ss_pred ccCceeeecCCCCCc-eEEecCCCceEEEEeccC---------------------CCeEEEeeccCc-chhhhhhhcccC
Confidence 446788888888884 778999999999999887 34444443 33 689999999999
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE---CCCcEEEEECCCCCCeeEEEec
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS---VDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s---~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
. .+..+..||.+.+|.+.. +. ....+.|.....++.|-- . ++++++ .++.+.+||.--+........+
T Consensus 2264 n-k~~i~d~dg~l~l~q~~p--k~---~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2264 N-KFGIVDGDGDLSLWQASP--KP---YTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred C-ceeeeccCCceeecccCC--cc---eeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeee
Confidence 7 999999999999999862 21 255677999999999975 3 677765 4789999998764332222288
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|.+.++++++-|.. .+|+|||.+|.|++||+|..+
T Consensus 2335 H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred cCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHH
Confidence 99999999999999 999999999999999998643
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.8e-08 Score=93.65 Aligned_cols=156 Identities=14% Similarity=0.200 Sum_probs=96.6
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
.+.+.+..++|+|++..++++.+.++ .|++|++... ....+..+........|+|+
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~----------------------~~~~l~~~~~~~~~~~~s~d 288 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK----------------------QLTRLTNGPGIDTEPSWSPD 288 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC----------------------CEEECCCCCCCCCCEEECCC
Confidence 35667778999999966666666555 4888887651 12233334444456789999
Q ss_pred CCCeEEEEeC-CC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC---cEEEEECCCCCCeeE
Q 018322 241 TTGRLVTGDC-NS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG---HIAIWDTRVGKSALT 314 (358)
Q Consensus 241 ~~~~l~sgs~-dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg---~I~iwD~r~~~~~~~ 314 (358)
+. +|+.++. .+ .|+++++... .. ..+..+...+..+.|+|++. .++.++.++ .|.+||+..+. ..
T Consensus 289 g~-~l~~~s~~~g~~~iy~~d~~~~-~~----~~l~~~~~~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~--~~ 359 (417)
T TIGR02800 289 GK-SIAFTSDRGGSPQIYMMDADGG-EV----RRLTFRGGYNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGG--ER 359 (417)
T ss_pred CC-EEEEEECCCCCceEEEEECCCC-CE----EEeecCCCCccCeEECCCCC-EEEEEEccCCceEEEEEeCCCCC--eE
Confidence 98 6665543 34 5777777653 21 22333455677889999998 676666665 78889988743 22
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeC-CC--CEEEEeCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSD-DG--TFSIHDLR 351 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~-Dg--~i~iwDlr 351 (358)
.+... .......|+|++ ..|+..+. ++ .+.+.+..
T Consensus 360 ~l~~~-~~~~~p~~spdg-~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 360 VLTDT-GLDESPSFAPNG-RMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EccCC-CCCCCceECCCC-CEEEEEEeCCCcEEEEEEECC
Confidence 23222 234456899999 55555444 33 35555543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=7e-08 Score=92.65 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=97.5
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCC--c--EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTG--H--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg--~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
..+.....+|+|+|..++.+...+| . +.+|++.... ...+.....++.......+|+|
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~------------------~g~~~~lt~~~~~~~~~p~wSP 290 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA------------------IGKPRRLLNEAFGTQGNPSFSP 290 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC------------------CCcceEeecCCCCCcCCeEECC
Confidence 4555667899999965555554434 2 3335554310 0122233333333445789999
Q ss_pred CCCCeEEEEe-CCCcEEEEec--CCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-C--CcEEEEECCCCCCee
Q 018322 240 ITTGRLVTGD-CNSCIYLWEP--ASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-D--GHIAIWDTRVGKSAL 313 (358)
Q Consensus 240 ~~~~~l~sgs-~dg~I~lwd~--~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-D--g~I~iwD~r~~~~~~ 313 (358)
+|. .|+..+ .+|...||.+ ...+.. ...+..+...+....|+|++. .|+.++. + ..|.+||+.++. .
T Consensus 291 DG~-~Laf~s~~~g~~~ly~~~~~~~g~~---~~~lt~~~~~~~~p~wSPDG~-~Laf~~~~~g~~~I~v~dl~~g~--~ 363 (428)
T PRK01029 291 DGT-RLVFVSNKDGRPRIYIMQIDPEGQS---PRLLTKKYRNSSCPAWSPDGK-KIAFCSVIKGVRQICVYDLATGR--D 363 (428)
T ss_pred CCC-EEEEEECCCCCceEEEEECcccccc---eEEeccCCCCccceeECCCCC-EEEEEEcCCCCcEEEEEECCCCC--e
Confidence 998 666544 5676556644 321211 123334445677889999999 5655544 3 368999998753 2
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeC--CCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSD--DGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~--Dg~i~iwDlr~~~ 354 (358)
..+......+....|+|++..+++++.. ...|.+||+...+
T Consensus 364 ~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 364 YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 3343333456789999999444445443 3468888987654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.3e-10 Score=94.14 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=102.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeC-----CCc
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC-----NSC 253 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~-----dg~ 253 (358)
+-++++..||.+.+++......... ..+.. |. .-.+.+....+. .+.++.+ -+.
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~~~---------------~i~~~----~~-~~as~~~~~~~~-~i~s~~~g~~n~~d~ 160 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLALMS---------------RIPSI----HS-GSASRKICRHGN-SILSGGCGNWNAQDN 160 (319)
T ss_pred CceEecCCCceEEEEechHHHhhhh---------------hcccc----cc-cccccceeeccc-EEecCCcceEeeccc
Confidence 4689999999999999877221110 11111 11 111222333333 3333322 234
Q ss_pred EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCC
Q 018322 254 IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLAS 333 (358)
Q Consensus 254 I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~ 333 (358)
.+.|+++..+....... ....|.+++-+|...+++++|+.||.+.+||.|....++..+.+|..+|+.+-|+|..+
T Consensus 161 ~~a~~~~p~~t~~~~~~----~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 161 FYANTLDPIKTLIPSKK----ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred eeeeccccccccccccc----ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence 56677655333221111 12349999999999889999999999999999997667777899999999999999988
Q ss_pred cEEEEEeCCCCEEEEeCCC
Q 018322 334 CLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 334 ~~lasgs~Dg~i~iwDlr~ 352 (358)
..|++++.||.+-.||..+
T Consensus 237 ~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hheeEecCCCcEEEEcCCC
Confidence 9999999999999999863
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.6e-10 Score=107.17 Aligned_cols=165 Identities=24% Similarity=0.371 Sum_probs=128.1
Q ss_pred CceeEEEEcCCC--CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 166 GCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 166 ~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-.|-.+.|+|+. +..+++.+.. .-.||++.... .....+.+.||...++.+.|+|+.+.
T Consensus 68 w~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ss------------------~~aIef~lhghsraitd~n~~~q~pd 128 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKSS------------------SNAIEFVLHGHSRAITDINFNPQHPD 128 (1081)
T ss_pred chhcceecccCCCCceeEEecCcc-hhhhhhhhcCC------------------ccceEEEEecCccceeccccCCCCCc
Confidence 345566777654 5556665554 45689987621 13344678899999999999999988
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.|++++.|..++.||+++..... ..+..-...-..|+|+...++++| .+....|++||+|.+..++..+++|-..|
T Consensus 129 Vlatcsvdt~vh~wd~rSp~~p~---ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~v 204 (1081)
T KOG0309|consen 129 VLATCSVDTYVHAWDMRSPHRPF---YSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSV 204 (1081)
T ss_pred ceeeccccccceeeeccCCCcce---eeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceee
Confidence 99999999999999999865543 223333345677999998885555 45568899999999888999999999999
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+.+.|+..-...+.+++.||+|+.||..+-
T Consensus 205 n~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 205 NSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred ehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 999999876578899999999999998653
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.4e-08 Score=93.26 Aligned_cols=164 Identities=15% Similarity=0.116 Sum_probs=99.3
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCC--CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
+..+...+...+|+|++..++.+...+ ..|.+|++... .. ..+........+..|+
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g---------------------~~-~~l~~~~g~~~~~~~S 251 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG---------------------RR-EQITNFEGLNGAPAWS 251 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC---------------------CE-EEccCCCCCcCCeEEC
Confidence 335677899999999995444443333 35888898752 11 1222222334578999
Q ss_pred CCCCCeEE-EEeCCC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC--cEEEEECCCCCCee
Q 018322 239 PITTGRLV-TGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--HIAIWDTRVGKSAL 313 (358)
Q Consensus 239 ~~~~~~l~-sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--~I~iwD~r~~~~~~ 313 (358)
|++. +|+ +.+.+| .|++||+.++.. ..+..+........|+|++..++++...+| .|.++|+..+. .
T Consensus 252 pDG~-~la~~~~~~g~~~Iy~~d~~~~~~-----~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~--~ 323 (430)
T PRK00178 252 PDGS-KLAFVLSKDGNPEIYVMDLASRQL-----SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR--A 323 (430)
T ss_pred CCCC-EEEEEEccCCCceEEEEECCCCCe-----EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC--E
Confidence 9998 665 555555 588888876322 223444555667899999984444443444 46667776643 2
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEe-CCC--CEEEEeCCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGS-DDG--TFSIHDLRLLKV 355 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs-~Dg--~i~iwDlr~~~~ 355 (358)
..+...........|+|++ ..|+..+ .++ .|.+||+.+.+.
T Consensus 324 ~~lt~~~~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 324 ERVTFVGNYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred EEeecCCCCccceEECCCC-CEEEEEEccCCceEEEEEECCCCCE
Confidence 2232222233457899999 5555444 344 578889877543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-08 Score=88.82 Aligned_cols=142 Identities=21% Similarity=0.395 Sum_probs=97.7
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccc-----------ccc---CCCCC-------CCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESET-----------IVG---QGAPQ-------VSN 218 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~-----------~~~---~~~~~-------~~~ 218 (358)
....|.+.|.++-|+-.. ..+++.+.|..+. |-.....+.+..... ... ....+ ...
T Consensus 109 ~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~ 186 (404)
T KOG1409|consen 109 DYLAHQARVSAIVFSLTH-EWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNG 186 (404)
T ss_pred hhhhhhcceeeEEecCCc-eeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecC
Confidence 345688999999888766 5666666665543 332221111100000 000 00000 134
Q ss_pred CCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC
Q 018322 219 QSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (358)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (358)
..++.++.+|.+++++++|.+... +|.+|..|..|.+||+--... . .....+|...|..++.-+.-. .+.+|+.|
T Consensus 187 ~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~g-~--~~el~gh~~kV~~l~~~~~t~-~l~S~~ed 261 (404)
T KOG1409|consen 187 CQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRKG-T--AYELQGHNDKVQALSYAQHTR-QLISCGED 261 (404)
T ss_pred CceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCcc-e--eeeeccchhhhhhhhhhhhhe-eeeeccCC
Confidence 567788999999999999999887 999999999999999954222 1 355778999999998877766 89999999
Q ss_pred CcEEEEECCC
Q 018322 299 GHIAIWDTRV 308 (358)
Q Consensus 299 g~I~iwD~r~ 308 (358)
|.|.+|++..
T Consensus 262 g~i~~w~mn~ 271 (404)
T KOG1409|consen 262 GGIVVWNMNV 271 (404)
T ss_pred CeEEEEeccc
Confidence 9999999853
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-07 Score=91.63 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=96.9
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
..+...+...+|+|++..++.+...++ .|++||+... .. ..+........+..|+|
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg---------------------~~-~~lt~~~g~~~~~~wSP 271 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ---------------------VR-EKVTSFPGINGAPRFSP 271 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC---------------------Ce-EEecCCCCCcCCeeECC
Confidence 456778999999999954444444444 5788887651 21 11211122334789999
Q ss_pred CCCCeEEEEeCCCc--EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCc--EEEEECCCCCCeeEE
Q 018322 240 ITTGRLVTGDCNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH--IAIWDTRVGKSALTS 315 (358)
Q Consensus 240 ~~~~~l~sgs~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~--I~iwD~r~~~~~~~~ 315 (358)
++..++++.+.+|. |++||+.++ .. ..+..+.......+|+|++..++++...++. |.++|+.++. ...
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg-~~----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~--~~~ 344 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATK-AL----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK--VSR 344 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCC-Ce----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC--EEE
Confidence 99833345666675 777787653 21 2333445556778999999855555544554 5556776543 233
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCC--EEEEeCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGT--FSIHDLRLLK 354 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~--i~iwDlr~~~ 354 (358)
+..+.......+|+|++..++++...++. |.++|+.+.+
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 32233334457999999444444444554 5556776654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=100.79 Aligned_cols=179 Identities=17% Similarity=0.230 Sum_probs=126.5
Q ss_pred CeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
.+-...+.+|+..|..|...... +-+++++.|.+|++|.+........ +..+.+++..|+.+|.+
T Consensus 725 ~irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~--------------tsaCQfTY~aHkk~i~~ 789 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIG--------------TSACQFTYQAHKKPIHD 789 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccc--------------cceeeeEhhhccCcccc
Confidence 34446778899999888776655 6788999999999999987433221 34577889999999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC--CCCEEEEEECCCcEEEEECCCCCC-
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT--EPDVFASCSVDGHIAIWDTRVGKS- 311 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--~~~~las~s~Dg~I~iwD~r~~~~- 311 (358)
+.|-.+.. +++ ++||.|++||.--+.... . .......+.+..+..-|+ ..-++|.|+...+|+++|.|....
T Consensus 790 igfL~~lr-~i~--ScD~giHlWDPFigr~La-q-~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~ 864 (1034)
T KOG4190|consen 790 IGFLADLR-SIA--SCDGGIHLWDPFIGRLLA-Q-MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWT 864 (1034)
T ss_pred eeeeeccc-eee--eccCcceeecccccchhH-h-hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccce
Confidence 99988765 554 568999999986532211 0 011112233333333333 333566668999999999998542
Q ss_pred eeEEE---ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 312 ALTSF---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 312 ~~~~~---~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+-..+ .+.+..+.+|+..+.| +.+|.|-.+|.|.+.|.|+++
T Consensus 865 ~E~kVcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 865 CELKVCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred eeEEeccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCc
Confidence 22222 2344668999999999 899999999999999999986
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=95.68 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=98.2
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
.+|-+.|.++.|+..-. .|.|++.|+.+..|+...... .+.+.+.+..+.+++.+|++. .+++++ +.|++||
T Consensus 99 ~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~----~~~~~~~~~~~~sl~is~D~~-~l~~as--~~ik~~~ 170 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVI----IRIWKEQKPLVSSLCISPDGK-ILLTAS--RQIKVLD 170 (541)
T ss_pred CCCCCcceeeecccccC-ceEecCCceeEEEEeccccee----eeeeccCCCccceEEEcCCCC-EEEecc--ceEEEEE
Confidence 46788999999988775 999999999999999977322 356777888999999999998 888777 6899999
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCC-----CCcEEEEEeCCCCEEEEeCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRL-----ASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~-----~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+.+ +..+..+.+|.++|++++|.-. |.++|.+...+.-+.+|-++.
T Consensus 171 ~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 171 IET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999 4688899999999999999877 546666666777888887765
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-08 Score=89.31 Aligned_cols=160 Identities=16% Similarity=0.247 Sum_probs=108.7
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
+|-.......-..++..++|+|+|..++.+..-+-.|.+|.+.+ +....+..-+..+.
T Consensus 80 Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t----------------------~~~~~~~~pK~~~k 137 (447)
T KOG4497|consen 80 QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNT----------------------QKGYLLPHPKTNVK 137 (447)
T ss_pred cceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecc----------------------ceeEEecccccCce
Confidence 45555555566788999999999988999999999999999987 22223333344567
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
.++|+|++. +.+.++.--..-..++..-..|.. .+.+.-.+...++|.|+|+|. .+ .+||.--. -.+
T Consensus 138 g~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~l-l~~f~~dT~DltgieWsPdg~-~l---------aVwd~~Le-ykv 204 (447)
T KOG4497|consen 138 GYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWIL-LKEFKLDTIDLTGIEWSPDGN-WL---------AVWDNVLE-YKV 204 (447)
T ss_pred eEEECCCCc-eeeeeecccHHHHHHHHhhHHHHH-HHhcCCCcccccCceECCCCc-EE---------EEecchhh-hee
Confidence 899999998 777776542222222322122221 234555667788999999997 44 46775431 122
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
..+ .-+-.+..++|+|.+ ++|+.|+.|+.++|-+-
T Consensus 205 ~aY-e~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 205 YAY-ERGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNH 239 (447)
T ss_pred eee-eeccceeEEEecccc-ceEEeeccchhhhhhce
Confidence 222 123468899999999 99999999999988654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.1e-08 Score=82.25 Aligned_cols=149 Identities=13% Similarity=0.060 Sum_probs=106.4
Q ss_pred EEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC--CeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 181 CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 181 lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
+..++.|.++++.++..... +. ..|.. ...+++.++++. ++++.+....|.+|.
T Consensus 131 ~~i~sndht~k~~~~~~~s~-------------------~~----~~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~ 186 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSN-------------------KF----AVHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYA 186 (344)
T ss_pred eeeccCCcceeEEEEecCcc-------------------cc----eeeccccceeeeEEcCCCc-eEEEecCCCcceEEE
Confidence 44557888888888876321 11 11222 377899999998 999999899999999
Q ss_pred cCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE----ecCCCCeEEEEEeCCCCc
Q 018322 259 PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF----KAHNADVNVISWNRLASC 334 (358)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~----~~h~~~V~~i~~~p~~~~ 334 (358)
+...+..... .....-+..-.+.+|+.... .||++..||++.|||+|....++... ..|++.+..+.|++.|.-
T Consensus 187 id~~sey~~~-~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l 264 (344)
T KOG4532|consen 187 IDDESEYIEN-IYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL 264 (344)
T ss_pred eCCccceeee-eEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc
Confidence 9875554321 11222334445678998877 99999999999999999876666544 458999999999986632
Q ss_pred -EEEEEeCCCCEEEEeCCCCCC
Q 018322 335 -LLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 335 -~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+|.-.-.=+.+.+-|+|+++.
T Consensus 265 DLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 265 DLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred eEEEEecCcceEEEEEcccCce
Confidence 333333457899999998763
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.7e-07 Score=89.18 Aligned_cols=155 Identities=17% Similarity=0.204 Sum_probs=88.9
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCc--EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADTGH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
+......|+|++..++++.+.+|. |+++|+.. .....+..+.......+|+|++.
T Consensus 262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t----------------------g~~~~lt~~~~~~~~p~wSpDG~- 318 (448)
T PRK04792 262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT----------------------KALTRITRHRAIDTEPSWHPDGK- 318 (448)
T ss_pred CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC----------------------CCeEECccCCCCccceEECCCCC-
Confidence 344578999999666667777776 66667654 12233444444567789999998
Q ss_pred eEE-EEeCCCc--EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCc--EEEEECCCCCCeeEEEec
Q 018322 244 RLV-TGDCNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH--IAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 244 ~l~-sgs~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~--I~iwD~r~~~~~~~~~~~ 318 (358)
.|+ +...++. |+++++.++ .... ..+.+ ......+|+|++..++++...++. |.++|+.++. ...+..
T Consensus 319 ~I~f~s~~~g~~~Iy~~dl~~g-~~~~--Lt~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~ 391 (448)
T PRK04792 319 SLIFTSERGGKPQIYRVNLASG-KVSR--LTFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA--MQVLTS 391 (448)
T ss_pred EEEEEECCCCCceEEEEECCCC-CEEE--EecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC--eEEccC
Confidence 554 4444444 555566542 2211 11222 223456899999944444444554 4556776643 222322
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCC--EEEEeCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGT--FSIHDLR 351 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~--i~iwDlr 351 (358)
.. ......|+|++..++++...+|. +.++++.
T Consensus 392 ~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 392 TR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CC-CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 21 22345899999555555555554 6677764
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.6e-07 Score=86.29 Aligned_cols=121 Identities=18% Similarity=0.168 Sum_probs=101.6
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
...-.|.+.|+++.++.+- ..|-+++.|+.+..|+... .+....+.+....+.+++.+
T Consensus 96 ~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~---------------------~~~~~~~~~~~~~~~sl~is 153 (541)
T KOG4547|consen 96 LSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKE---------------------KVIIRIWKEQKPLVSSLCIS 153 (541)
T ss_pred EecCCCCCcceeeeccccc-CceEecCCceeEEEEeccc---------------------ceeeeeeccCCCccceEEEc
Confidence 3445799999999988877 6899999999999999987 46667777888889999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC-----CCCEEEEEECCCcEEEEECCC
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT-----EPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-----~~~~las~s~Dg~I~iwD~r~ 308 (358)
|++. .|++|+ +.|.+||+.+... ...|.||.++|.+++|--. |.++|.+...+..|.+|-++.
T Consensus 154 ~D~~-~l~~as--~~ik~~~~~~kev----v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 154 PDGK-ILLTAS--RQIKVLDIETKEV----VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCC-EEEecc--ceEEEEEccCceE----EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9987 999887 7899999987433 3689999999999999776 666777777788899997765
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.1e-07 Score=86.02 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=90.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.+.+...+|+|++..++.+.+.+| .|++||+.. .....+..+........|+|++.
T Consensus 242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~----------------------~~~~~lt~~~~~~~~~~~spDg~ 299 (430)
T PRK00178 242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS----------------------RQLSRVTNHPAIDTEPFWGKDGR 299 (430)
T ss_pred CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC----------------------CCeEEcccCCCCcCCeEECCCCC
Confidence 344557899999965655666666 577778765 12233444445566789999998
Q ss_pred CeEEEEe-CCC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-CC--cEEEEECCCCCCeeEEE
Q 018322 243 GRLVTGD-CNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DG--HIAIWDTRVGKSALTSF 316 (358)
Q Consensus 243 ~~l~sgs-~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg--~I~iwD~r~~~~~~~~~ 316 (358)
.|+..+ .+| .|+++++.++. ... ..+.+ .......|+|++. .++..+. ++ .|.+||+.++.. ..+
T Consensus 300 -~i~f~s~~~g~~~iy~~d~~~g~-~~~--lt~~~--~~~~~~~~Spdg~-~i~~~~~~~~~~~l~~~dl~tg~~--~~l 370 (430)
T PRK00178 300 -TLYFTSDRGGKPQIYKVNVNGGR-AER--VTFVG--NYNARPRLSADGK-TLVMVHRQDGNFHVAAQDLQRGSV--RIL 370 (430)
T ss_pred -EEEEEECCCCCceEEEEECCCCC-EEE--eecCC--CCccceEECCCCC-EEEEEEccCCceEEEEEECCCCCE--EEc
Confidence 555444 444 57777775532 211 11111 2234568999999 5555443 43 578889887532 223
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCC--CEEEEeCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRL 352 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg--~i~iwDlr~ 352 (358)
. +........|+|+|..++++....| .|.++++..
T Consensus 371 t-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 371 T-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred c-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 2 1222235689999944444444443 466677643
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-08 Score=88.08 Aligned_cols=189 Identities=15% Similarity=0.193 Sum_probs=120.9
Q ss_pred CCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCcccccccccc------ccCCC---------------CCCCCCCCc
Q 018322 165 QGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETI------VGQGA---------------PQVSNQSPL 222 (358)
Q Consensus 165 ~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~------~~~~~---------------~~~~~~~~~ 222 (358)
...|+.|+|...+ ...+...+.|.+|+||.+....-.+-..... ...+. .......|.
T Consensus 85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~ 164 (460)
T COG5170 85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC 164 (460)
T ss_pred HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccc
Confidence 4567888887544 3345555789999999987631111100000 00000 000112233
Q ss_pred EEE-cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc--ccCC--CccccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 223 VKF-GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW--NVDP--NPFIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 223 ~~~-~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~--~~~~--~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
..+ ..|..-+.++.++.+.. .+++++ |-.|.+|++.-.... ++.+ ..+..-+.-|++..|+|...++|+-.+.
T Consensus 165 rvyaNaH~yhiNSiS~NsD~e-t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 165 RVYANAHPYHINSISFNSDKE-TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred eeccccceeEeeeeeecCchh-eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 333 45777888999999987 788876 889999998653221 1111 1122224568889999999889999999
Q ss_pred CCcEEEEECCCCCCeeE-------EE--------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCCC
Q 018322 298 DGHIAIWDTRVGKSALT-------SF--------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~-------~~--------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
.|.|++-|+|...-|.. .+ ..-.+.|..+.|+++| ++|++-+. -+|+|||.++-+.|+
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRdy-ltvkiwDvnm~k~pi 315 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRDY-LTVKIWDVNMAKNPI 315 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEecc-ceEEEEecccccCCc
Confidence 99999999996321111 01 1112457888999999 89988765 589999999988775
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-08 Score=88.72 Aligned_cols=123 Identities=17% Similarity=0.165 Sum_probs=91.1
Q ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC-CCCCEEEEEECCCcEEEEEC
Q 018322 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD~ 306 (358)
.++.|+++.|...++ ++..|..+|.|...|++...+-..-.....-|.++|++++.-. .++ .|++.+.+|+|++||+
T Consensus 251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q-~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQ-KLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccc-eEeeccCcCceeEeee
Confidence 345789999998887 9999999999999999875221111133445899999998766 445 8999999999999999
Q ss_pred CCCCCe---eEEEecCCCCeEEE--EEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 307 RVGKSA---LTSFKAHNADVNVI--SWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 307 r~~~~~---~~~~~~h~~~V~~i--~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|.- ++ +.++.+|-..-.-+ ..++.. ..++++|+|...+||.++.+.
T Consensus 329 R~~-K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 329 RAT-KCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhh-hcccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCc
Confidence 984 34 66677774432222 233444 688889999999999998653
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-07 Score=82.34 Aligned_cols=169 Identities=18% Similarity=0.296 Sum_probs=123.7
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
.+.++.++.+.+.. ..|.+|-..|++.-+.+...-++. ........|...+..+-|+-...
T Consensus 67 mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfnkm-----------------~~~r~~~~h~~~v~~~if~~~~e- 127 (404)
T KOG1409|consen 67 MPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFNKM-----------------TFLKDYLAHQARVSAIVFSLTHE- 127 (404)
T ss_pred CCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhhhc-----------------chhhhhhhhhcceeeEEecCCce-
Confidence 35788889998887 789999999999988876643322 33344455666666666665555
Q ss_pred eEEEEeCCCcEEEEecCCCC--------------------------------------CcccCCCccccCCCcEEEEEEC
Q 018322 244 RLVTGDCNSCIYLWEPASDA--------------------------------------TWNVDPNPFIGHSASVEDLQWS 285 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~--------------------------------------~~~~~~~~~~~h~~~V~~v~~s 285 (358)
.+++.+.|..+. |-....+ ........+.+|...+.+++|.
T Consensus 128 ~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd 206 (404)
T KOG1409|consen 128 WVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD 206 (404)
T ss_pred eEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc
Confidence 566665554432 2221110 0011124567899999999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|... ++.+|..|..|.+||+.-.+.....+.+|...|..+..-+.. ..+.+++.||.|.+|++...+
T Consensus 207 ~~~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 207 PGQR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred CCCc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEecccee
Confidence 9888 999999999999999987555667778999999998888777 889999999999999997643
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-08 Score=92.39 Aligned_cols=173 Identities=18% Similarity=0.189 Sum_probs=120.5
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 246 (358)
..+.|+..|.+++.+|+|+.|-.+++||.+.....-... .. ...-|..........|+|++++..+. -|+
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~-~~--------~~f~p~hl~~d~~v~ITgl~Ysh~~s-ElL 352 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG-VL--------DKFCPHHLVEDDPVNITGLVYSHDGS-ELL 352 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccc-hh--------hhcCCccccccCcccceeEEecCCcc-cee
Confidence 678899999998899999999999999987732111000 00 00111111112234799999998876 666
Q ss_pred EEeCCCcEEEEecCCCCC--c-------ccCCCccccCCC--cEEEEEE-CCCCCCEEEEEECCCcEEEEECCCCCCeeE
Q 018322 247 TGDCNSCIYLWEPASDAT--W-------NVDPNPFIGHSA--SVEDLQW-SPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 247 sgs~dg~I~lwd~~~~~~--~-------~~~~~~~~~h~~--~V~~v~~-sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
++-.|-.|+|+.-..+.. . ....+.|+||.. .|-.+-| -|... ++++||+=|.|.||+-.++ ..+.
T Consensus 353 aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~-eii~ 430 (559)
T KOG1334|consen 353 ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTG-EIIR 430 (559)
T ss_pred eeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecchh-HHHH
Confidence 777788999995432111 0 111233788864 4666655 56666 9999999999999998874 4555
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+.+...-||||.=+|.- .+|||+|-|.-|+||-.-.
T Consensus 431 ~MegDr~VVNCLEpHP~~-PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 431 FMEGDRHVVNCLEPHPHL-PVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred HhhcccceEeccCCCCCC-chhhccCCccceeeecCCc
Confidence 556666689999999999 8999999999999997633
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-07 Score=91.07 Aligned_cols=157 Identities=13% Similarity=0.179 Sum_probs=111.0
Q ss_pred CCeEEEEEec-------CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc
Q 018322 154 TPILQLRKVA-------HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (358)
Q Consensus 154 ~~~~~~~~~~-------H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
+|++....+. ....+.|+.++. .+||-|+..|.|++++... .+ .+..
T Consensus 21 ePklkY~Ri~n~~~~~~~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~----------------------~~-~~~~ 74 (846)
T KOG2066|consen 21 EPKLKYERISNLVKNFLQNDAISCCAVHD---KFFALGTHRGAVYLTTCQG----------------------NP-KTNF 74 (846)
T ss_pred CccceehhhhcccHHHHhhhHHHHHHhhc---ceeeeccccceEEEEecCC----------------------cc-cccc
Confidence 6777655443 235666666654 6899999999999999876 33 2233
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC-----CCCEEEEEECCCcE
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT-----EPDVFASCSVDGHI 301 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-----~~~~las~s~Dg~I 301 (358)
.|... ...|. +++||+.||+|.|-.+-+.... .......++.+|+++|+ .+ .|++|+.-| +
T Consensus 75 ~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~-----~~~df~rpiksial~Pd~~~~~sk-~fv~GG~ag-l 140 (846)
T KOG2066|consen 75 DHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI-----TQYDFKRPIKSIALHPDFSRQQSK-QFVSGGMAG-L 140 (846)
T ss_pred ccccc------ccCCc-eEEEecCCCcEEEeeccCCccc-----eeEecCCcceeEEeccchhhhhhh-heeecCcce-E
Confidence 44433 55677 9999999999999888664331 12234578999999998 23 799999999 8
Q ss_pred EEEECCCCCCe-eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 302 AIWDTRVGKSA-LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 302 ~iwD~r~~~~~-~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.++.-+.-+.. -..+..-.++|.+|.|. | .+||=++++| |++||+.+.+
T Consensus 141 vL~er~wlgnk~~v~l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 141 VLSERNWLGNKDSVVLSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQ 190 (846)
T ss_pred EEehhhhhcCccceeeecCccceEEEEec--C-cEEEEecCCC-cEEEeccccc
Confidence 88765542222 12356667899999997 4 7888887776 8999987654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-07 Score=91.32 Aligned_cols=176 Identities=15% Similarity=0.182 Sum_probs=127.5
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
++.....+|+.|+... .++|+|+.||.+++..+.+........+.... .+...-+++.||...|.-+.|+...
T Consensus 11 iPnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~------snLsmNQtLeGH~~sV~vvTWNe~~ 83 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAA------SNLSMNQTLEGHNASVMVVTWNENN 83 (1189)
T ss_pred CCCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccc------cccchhhhhccCcceEEEEEecccc
Confidence 3456788999999877 69999999999999998774333322221111 1233445789999999999999988
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
. .|-|.+.+|.|.+|-+-. +.|... ..-...++-|.+++|+.+|. .++..-.||.|.+=.+... .+..-.-...
T Consensus 84 Q-KLTtSDt~GlIiVWmlyk-gsW~EE-MiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGN--RIwgKeLkg~ 157 (1189)
T KOG2041|consen 84 Q-KLTTSDTSGLIIVWMLYK-GSWCEE-MINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGN--RIWGKELKGQ 157 (1189)
T ss_pred c-cccccCCCceEEEEeeec-ccHHHH-HhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccc--eecchhcchh
Confidence 7 999999999999999976 566421 11122467899999999998 8999999999887666532 2221111122
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
....+.|+++. ..++.+-.+|.++++|..
T Consensus 158 ~l~hv~ws~D~-~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 158 LLAHVLWSEDL-EQALFKKANGETHLYDNQ 186 (1189)
T ss_pred eccceeecccH-HHHHhhhcCCcEEEeccc
Confidence 23467899998 777777788999999874
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-07 Score=81.27 Aligned_cols=166 Identities=20% Similarity=0.244 Sum_probs=116.4
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC-----CCeEEEE
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-----DEGYAID 236 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~ 236 (358)
-.|+-.||+|.++.+.. .+.+ ++|-.|.+|++......+ .+..++.|. .-|++..
T Consensus 169 NaH~yhiNSiS~NsD~e-t~lS-aDdLrINLWnl~i~D~sF------------------nIVDiKP~nmeeLteVItSae 228 (460)
T COG5170 169 NAHPYHINSISFNSDKE-TLLS-ADDLRINLWNLEIIDGSF------------------NIVDIKPHNMEELTEVITSAE 228 (460)
T ss_pred ccceeEeeeeeecCchh-eeee-ccceeeeeccccccCCce------------------EEEeccCccHHHHHHHHhhcc
Confidence 46999999999998884 4444 577899999998732221 112233343 2577889
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCccc------------CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNV------------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~------------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (358)
|+|...+.+.-.+..|.|++-|++....+.. ...-+.+-.++|.+++|+++|+ ++++-+ --+|+||
T Consensus 229 Fhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRd-yltvkiw 306 (460)
T COG5170 229 FHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRD-YLTVKIW 306 (460)
T ss_pred cCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEec-cceEEEE
Confidence 9998776777777899999999985322110 0112334567899999999998 676655 4699999
Q ss_pred ECCCCCCeeEEEecCC------------CCe---EEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 305 DTRVGKSALTSFKAHN------------ADV---NVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 305 D~r~~~~~~~~~~~h~------------~~V---~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
|.+..+.|+.++.-|. ..| ..+.|+-+. ..+++|+......|+-.
T Consensus 307 Dvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~-~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 307 DVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDD-KHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCc-ccccccccccceeeecc
Confidence 9999888888775553 223 346788777 78888888777777653
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.5e-07 Score=76.10 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=104.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
.+||.|+.-|...+|...+. .........|...|+-+.=.-+....+..++.|.++++.+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn--------------------~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~ 144 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTN--------------------DGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMV 144 (344)
T ss_pred cEEEeccccceeeeecccCc--------------------ccceeeecccccchhhhhhhcccccceeeccCCcceeEEE
Confidence 58999999999999999862 2233333444443332221112222677788888888888
Q ss_pred cCCCCCcccCCCccccCCCc--EEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE--EecCCCCeEEEEEeCCCCc
Q 018322 259 PASDATWNVDPNPFIGHSAS--VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--FKAHNADVNVISWNRLASC 334 (358)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~--~~~h~~~V~~i~~~p~~~~ 334 (358)
+.... ..+..|... +++++.++++. ++++.+....|..|.+......+.. .......=.+.+|+... .
T Consensus 145 ~~~~s------~~~~~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~ 216 (344)
T KOG4532|consen 145 VSGDS------NKFAVHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-L 216 (344)
T ss_pred EecCc------ccceeeccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-c
Confidence 85432 233345443 88899999998 9999999999999998764333322 22333344677999888 8
Q ss_pred EEEEEeCCCCEEEEeCCCCCCCC
Q 018322 335 LLASGSDDGTFSIHDLRLLKVRL 357 (358)
Q Consensus 335 ~lasgs~Dg~i~iwDlr~~~~~l 357 (358)
.+|++..||++.|||+|....|.
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eEEEEecCCcEEEEEecccccch
Confidence 99999999999999999987663
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-07 Score=58.45 Aligned_cols=38 Identities=37% Similarity=0.735 Sum_probs=35.5
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
+++.++.+|...|++|+|+|++ .+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 3677889999999999999998 9999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-06 Score=82.01 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=93.6
Q ss_pred CCCceeEEEEcCCCCc--EEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 164 HQGCVNRIRAMTQNPH--ICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~--~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
..+.+..-+|+|+|.. ++.+...+| .|++.++... .. ..+....+......|+|
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g---------------------~~-~~lt~~~g~~~~p~wSP 240 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP---------------------AG-KKILALQGNQLMPTFSP 240 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC---------------------Cc-eEeecCCCCccceEECC
Confidence 4456677799999854 333444444 4666677651 11 12222333455789999
Q ss_pred CCCCeEEEEe-CCC----cEEEEecCCCCCcccCCCccc-cCCCcEEEEEECCCCCCEEEEEE-CCCcEEEEE--CCCCC
Q 018322 240 ITTGRLVTGD-CNS----CIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCS-VDGHIAIWD--TRVGK 310 (358)
Q Consensus 240 ~~~~~l~sgs-~dg----~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD--~r~~~ 310 (358)
+|. +|+..+ .+| .+.+|++..+.... ...+. ++.......+|+|+|. .|+..+ .+|...||. +....
T Consensus 241 DG~-~Laf~s~~~g~~di~~~~~~~~~g~~g~--~~~lt~~~~~~~~~p~wSPDG~-~Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 241 RKK-LLAFISDRYGNPDLFIQSFSLETGAIGK--PRRLLNEAFGTQGNPSFSPDGT-RLVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred CCC-EEEEEECCCCCcceeEEEeecccCCCCc--ceEeecCCCCCcCCeEECCCCC-EEEEEECCCCCceEEEEECcccc
Confidence 998 665443 233 34446665421100 11222 2223446789999999 555444 567666664 43212
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEe-CC--CCEEEEeCCCCCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGS-DD--GTFSIHDLRLLKV 355 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs-~D--g~i~iwDlr~~~~ 355 (358)
.....+..+...+....|+|+| ..|+..+ .+ ..|.+||+.+++.
T Consensus 317 ~~~~~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred cceEEeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCCe
Confidence 2334454455567788999999 6555443 33 3689999976653
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-06 Score=79.63 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=67.3
Q ss_pred EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
.+-||-..++.++|+|+.. ++++++.|..|++-...... . .-.-+.||+.-|..++.-++. .|+|+|.|++|++
T Consensus 146 ~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f--~-IesfclGH~eFVS~isl~~~~--~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATF--V-IESFCLGHKEFVSTISLTDNY--LLLSGSGDKTLRL 219 (390)
T ss_pred hhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCccc--c-hhhhccccHhheeeeeeccCc--eeeecCCCCcEEE
Confidence 3569999999999999998 99999999999997664321 1 123456899999999988765 5999999999999
Q ss_pred EECCCCC
Q 018322 304 WDTRVGK 310 (358)
Q Consensus 304 wD~r~~~ 310 (358)
||+++++
T Consensus 220 Wd~~sgk 226 (390)
T KOG3914|consen 220 WDITSGK 226 (390)
T ss_pred EecccCC
Confidence 9999965
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-06 Score=85.15 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=125.1
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC-
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT- 242 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~- 242 (358)
|...-+.+.|+|+| +||-|+. ..|.+-|... .+.+..+..|...|+.+.|.|...
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s---------------------~q~iqsie~h~s~V~~VrWap~~~p 69 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRS---------------------LQLIQSIELHQSAVTSVRWAPAPSP 69 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhh---------------------hhhhhccccCccceeEEEeccCCCc
Confidence 44457788999998 8888776 4677778766 577788888999999999987531
Q ss_pred ----------CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC---CCCCEEEEEECCCcEEEEECCCC
Q 018322 243 ----------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP---TEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 243 ----------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp---~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
-+||+++..|.|.+||...... ...+..|..++.+++|-| +.+++++.-....+|.+|+..+|
T Consensus 70 ~~llS~~~~~lliAsaD~~GrIil~d~~~~s~----~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG 145 (1062)
T KOG1912|consen 70 RDLLSPSSSQLLIASADISGRIILVDFVLASV----INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG 145 (1062)
T ss_pred hhccCccccceeEEeccccCcEEEEEehhhhh----hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC
Confidence 1688999999999999977433 256777889999999965 34468888888899999999986
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
..+...........|+.+.|..++.+..-+..|.+.+-+.--.+.
T Consensus 146 -~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~se 190 (1062)
T KOG1912|consen 146 -EKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSE 190 (1062)
T ss_pred -ceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCC
Confidence 466666665666788999998777777667778777766544433
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-07 Score=81.65 Aligned_cols=139 Identities=15% Similarity=0.192 Sum_probs=101.9
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeC
Q 018322 171 IRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC 250 (358)
Q Consensus 171 i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~ 250 (358)
.+|+|.| +++|+.+.- .+.|-|..+ .+..+.|.. -+.|.-|.|..+....|.....
T Consensus 14 c~fSp~g-~yiAs~~~y-rlviRd~~t---------------------lq~~qlf~c-ldki~yieW~ads~~ilC~~yk 69 (447)
T KOG4497|consen 14 CSFSPCG-NYIASLSRY-RLVIRDSET---------------------LQLHQLFLC-LDKIVYIEWKADSCHILCVAYK 69 (447)
T ss_pred eeECCCC-Ceeeeeeee-EEEEeccch---------------------hhHHHHHHH-HHHhhheeeeccceeeeeeeec
Confidence 4789999 799998775 777777665 222222221 3466778999888745666778
Q ss_pred CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeC
Q 018322 251 NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR 330 (358)
Q Consensus 251 dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p 330 (358)
++.|.+|++.. ..|. ..+......+.+++|||+|++++.+...+-.|.+|.+.+.. ...+..-...+..++|+|
T Consensus 70 ~~~vqvwsl~Q-pew~---ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~~~~~~pK~~~kg~~f~~ 143 (447)
T KOG4497|consen 70 DPKVQVWSLVQ-PEWY---CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--GYLLPHPKTNVKGYAFHP 143 (447)
T ss_pred cceEEEEEeec-ceeE---EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--eEEecccccCceeEEECC
Confidence 89999999976 4444 34555678899999999999899999999999999998832 223333344568899999
Q ss_pred CCCcEEEEEe
Q 018322 331 LASCLLASGS 340 (358)
Q Consensus 331 ~~~~~lasgs 340 (358)
+| ++.+.++
T Consensus 144 dg-~f~ai~s 152 (447)
T KOG4497|consen 144 DG-QFCAILS 152 (447)
T ss_pred CC-ceeeeee
Confidence 99 7766654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.8e-05 Score=74.43 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=100.3
Q ss_pred eEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEE
Q 018322 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (358)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 248 (358)
..+.|+|++ +++.+.+.||.|.++|+.. .+.+..+..- ....+++++++|. +++++
T Consensus 40 ~~~~~s~Dg-r~~yv~~rdg~vsviD~~~---------------------~~~v~~i~~G-~~~~~i~~s~DG~-~~~v~ 95 (369)
T PF02239_consen 40 AGLKFSPDG-RYLYVANRDGTVSVIDLAT---------------------GKVVATIKVG-GNPRGIAVSPDGK-YVYVA 95 (369)
T ss_dssp EEEE-TT-S-SEEEEEETTSEEEEEETTS---------------------SSEEEEEE-S-SEEEEEEE--TTT-EEEEE
T ss_pred eEEEecCCC-CEEEEEcCCCeEEEEECCc---------------------ccEEEEEecC-CCcceEEEcCCCC-EEEEE
Confidence 446789988 5666678899999999988 4555555443 3567899999998 77655
Q ss_pred -eCCCcEEEEecCCCCCcccC-CCcc--ccCCCcEEEEEECCCCCCEEEEEE-CCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 249 -DCNSCIYLWEPASDATWNVD-PNPF--IGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 249 -s~dg~I~lwd~~~~~~~~~~-~~~~--~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
...+.+.++|..+....... .... ....+.+..|..+|..+ .|+..- .-+.|.+.|..................
T Consensus 96 n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~ 174 (369)
T PF02239_consen 96 NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP 174 (369)
T ss_dssp EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EEEEEETTTTEEEEEETTTSSCEEEEEEE--TTE
T ss_pred ecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EEEEEEccCCeEEEEEeccccccceeeecccccc
Confidence 46899999998774321100 0001 11345788888888888 555544 458888889877544433343345567
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
....|.|++.+++++......|-++|+.+.+
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred cccccCcccceeeecccccceeEEEeeccce
Confidence 7899999994445555566789999987654
|
... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-07 Score=58.64 Aligned_cols=38 Identities=26% Similarity=0.580 Sum_probs=35.3
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
+++.++.+|...|++|+|+|++. +|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 45678999999999999999987 999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-05 Score=76.16 Aligned_cols=162 Identities=18% Similarity=0.310 Sum_probs=108.1
Q ss_pred CCCceeEEEEcCC-CCcEEEE-----EeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 164 HQGCVNRIRAMTQ-NPHICAS-----WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 164 H~~~V~~i~~~p~-~~~~lat-----~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
|...|+.+.++|. .+..+|+ +|.-+.|+||.+..... ..++..-.-....=..+.|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~------------------~~~~a~ksFFkadkvqm~W 225 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ------------------HQPVANKSFFKADKVQMKW 225 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc------------------cchhhhccccccceeEEEe
Confidence 5788899999997 3556666 45557899999874110 1111111111222236889
Q ss_pred CCCCCCeEEEEeC--C---------CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEE--ECCCcEEEE
Q 018322 238 NPITTGRLVTGDC--N---------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC--SVDGHIAIW 304 (358)
Q Consensus 238 s~~~~~~l~sgs~--d---------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~--s~Dg~I~iw 304 (358)
++.+.++|+.++. | .++++.++.. ....+ .+ ...++|.++.|+|++. -|+.+ -.=..+.||
T Consensus 226 N~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~s~~V---~L-~k~GPVhdv~W~~s~~-EF~VvyGfMPAkvtif 299 (566)
T KOG2315|consen 226 NKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-ESVSV---PL-LKEGPVHDVTWSPSGR-EFAVVYGFMPAKVTIF 299 (566)
T ss_pred ccCCceEEEEEEEeecCCCccccccceEEEEEecC-ceEEE---ec-CCCCCceEEEECCCCC-EEEEEEecccceEEEE
Confidence 9998876655543 3 3677777752 22221 11 2468999999999997 55554 456789999
Q ss_pred ECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC---CCCEEEEeCCCCC
Q 018322 305 DTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD---DGTFSIHDLRLLK 354 (358)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~---Dg~i~iwDlr~~~ 354 (358)
|+|. .++..+ -.++-|++-|||.| ++|+.+|. -|.+-|||+.+.+
T Consensus 300 nlr~--~~v~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 300 NLRG--KPVFDF--PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred cCCC--CEeEeC--CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchh
Confidence 9986 455444 46677999999999 88877775 4799999998843
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.9e-06 Score=86.98 Aligned_cols=175 Identities=9% Similarity=0.036 Sum_probs=109.8
Q ss_pred eEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccc-cccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEE
Q 018322 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNA-LAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (358)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 247 (358)
+.|+++|.+..++++.+.++.|++||....... +...+... ....... ....-...++|+++|++..++++
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~------~~~g~~~--~~~~~~~P~GIavspdG~~LYVA 757 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER------NLNGSSG--TSTSFAQPSGISLSPDLKELYIA 757 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc------cCCCCcc--ccccccCccEEEEeCCCCEEEEE
Confidence 468889855578888888899999998653211 00000000 0000000 00111245689999998634455
Q ss_pred EeCCCcEEEEecCCCCCcccC---------CCcccc--------CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 248 GDCNSCIYLWEPASDATWNVD---------PNPFIG--------HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 248 gs~dg~I~lwd~~~~~~~~~~---------~~~~~~--------h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
-..++.|++||+.+++..... ...+.. .-.....+++++++. ++++-+.++.|++||..++
T Consensus 758 Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg- 835 (1057)
T PLN02919 758 DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATK- 835 (1057)
T ss_pred ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCC-
Confidence 556789999998764321100 000100 112345789999998 9999999999999999863
Q ss_pred CeeEEEec--------------CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 311 SALTSFKA--------------HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 311 ~~~~~~~~--------------h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+..+.+ +-.....|+++++| .++++-+.++.|++||+++.+.
T Consensus 836 -~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 836 -RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -eEEEEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCcc
Confidence 2222221 12246789999999 8888888999999999988653
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.6e-07 Score=77.14 Aligned_cols=75 Identities=21% Similarity=0.400 Sum_probs=66.2
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
.|.+++-+|....++++|+.+|.+-|||.++...+ ...+..|+.++..|-|+|..+..|++|+.||.+-.||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p---~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP---VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccch---HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 49999999998878999999999999999985332 3567889999999999999988999999999999999874
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.9e-06 Score=76.68 Aligned_cols=110 Identities=15% Similarity=0.298 Sum_probs=83.0
Q ss_pred CCCeEEEEeCCCCCCeEEE--EeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC---CCcEEE
Q 018322 229 KDEGYAIDWNPITTGRLVT--GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV---DGHIAI 303 (358)
Q Consensus 229 ~~~v~~l~~s~~~~~~l~s--gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~---Dg~I~i 303 (358)
.++|+++.|+|.+. .|++ |-.=..+.|+|++- .. .+.--.++=+++-|+|.|+ +++.++. -|.|-|
T Consensus 270 ~GPVhdv~W~~s~~-EF~VvyGfMPAkvtifnlr~--~~-----v~df~egpRN~~~fnp~g~-ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGR-EFAVVYGFMPAKVTIFNLRG--KP-----VFDFPEGPRNTAFFNPHGN-IILLAGFGNLPGDMEV 340 (566)
T ss_pred CCCceEEEECCCCC-EEEEEEecccceEEEEcCCC--CE-----eEeCCCCCccceEECCCCC-EEEEeecCCCCCceEE
Confidence 57999999999997 5554 44567899999864 21 1222456778899999999 7776665 489999
Q ss_pred EECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC------CCCEEEEeCC
Q 018322 304 WDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD------DGTFSIHDLR 351 (358)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~------Dg~i~iwDlr 351 (358)
||+.+ .+++..+.+-.. +.+.|+|+| .+|+|+.. |+.++||+..
T Consensus 341 wDv~n-~K~i~~~~a~~t--t~~eW~PdG-e~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 341 WDVPN-RKLIAKFKAANT--TVFEWSPDG-EYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred Eeccc-hhhccccccCCc--eEEEEcCCC-cEEEEEeccccEEecCCeEEEEec
Confidence 99998 567777766554 557999999 67766653 7889999874
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.9e-06 Score=81.07 Aligned_cols=149 Identities=15% Similarity=0.165 Sum_probs=113.0
Q ss_pred eeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEE
Q 018322 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVT 247 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 247 (358)
|.-+|.+ .+++.+|...|+|.+-|.++ .+++.++..|++.+.+++. .|+ .|++
T Consensus 180 v~imR~N---nr~lf~G~t~G~V~LrD~~s---------------------~~~iht~~aHs~siSDfDv--~GN-lLit 232 (1118)
T KOG1275|consen 180 VTIMRYN---NRNLFCGDTRGTVFLRDPNS---------------------FETIHTFDAHSGSISDFDV--QGN-LLIT 232 (1118)
T ss_pred eEEEEec---CcEEEeecccceEEeecCCc---------------------Cceeeeeeccccceeeeec--cCC-eEEE
Confidence 5555543 37899999999999999987 6888999999998876655 555 8888
Q ss_pred EeC---------CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC---CCCeeEE
Q 018322 248 GDC---------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV---GKSALTS 315 (358)
Q Consensus 248 gs~---------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~---~~~~~~~ 315 (358)
|+. |..|+|||+|..... .++.-+.++ .=++|+|.-...++.++..|...+-|... +...+..
T Consensus 233 CG~S~R~~~l~~D~FvkVYDLRmmral----~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~ 307 (1118)
T KOG1275|consen 233 CGYSMRRYNLAMDPFVKVYDLRMMRAL----SPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM 307 (1118)
T ss_pred eecccccccccccchhhhhhhhhhhcc----CCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeE
Confidence 864 456789999885442 233333333 44689999888999999999999999443 2222333
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
+..-++.+..+.+++++ ..||.|..+|.|.+|-
T Consensus 308 v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 308 VNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA 340 (1118)
T ss_pred EccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence 44556669999999999 9999999999999997
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-05 Score=75.70 Aligned_cols=147 Identities=12% Similarity=0.113 Sum_probs=99.5
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 018322 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (358)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~ 259 (358)
++++-..+|.|.+.|..+ .+.+..+......-..+.++|++. ++++++.||.|.++|+
T Consensus 8 ~~V~~~~~~~v~viD~~t---------------------~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~ 65 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGAT---------------------NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDL 65 (369)
T ss_dssp EEEEEGGGTEEEEEETTT----------------------SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEET
T ss_pred EEEEecCCCEEEEEECCC---------------------CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEEC
Confidence 445666789999999887 466677765444434578999998 8888899999999999
Q ss_pred CCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec-------CCCCeEEEEEeCCC
Q 018322 260 ASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA-------HNADVNVISWNRLA 332 (358)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~-------h~~~V~~i~~~p~~ 332 (358)
.+.. .. ..+.. .....+++++++++.+++++...+.+.++|.++. +++..+.. ..+.+..|..+|..
T Consensus 66 ~~~~-~v---~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 66 ATGK-VV---ATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp TSSS-EE---EEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred Cccc-EE---EEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccccccCCCceeEEecCCC
Confidence 8743 22 22322 3456789999999977777788999999999984 46665532 23467888888888
Q ss_pred CcEEEEEeCCCCEEEEeCCCCC
Q 018322 333 SCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 333 ~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..++++--+-+.|.+.|....+
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSS
T ss_pred CEEEEEEccCCeEEEEEecccc
Confidence 4466666566888888877664
|
... |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.9e-08 Score=92.40 Aligned_cols=170 Identities=20% Similarity=0.286 Sum_probs=115.7
Q ss_pred CCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 165 QGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 165 ~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
...+.|+.+.-.. ..++|.|..+|.|-+-.+..... .......+|...+++++|++...+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------------Ss~E~tp~~ar~Ct~lAwneLDtn 116 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------------SSAEVTPGYARPCTSLAWNELDTN 116 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------------ccceecccccccccccccccccHH
Confidence 3456666665444 26899999999999998876321 112334577889999999998776
Q ss_pred eEEEE----eCCCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 244 RLVTG----DCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 244 ~l~sg----s~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
.||+| ..|..+.|||+.+.-........|.+ ......+++|-.+.+ ++.+|...+.+.++|+|........+
T Consensus 117 ~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 117 HLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 88887 35678999999774221111112222 345566899998888 89999999999999999632222222
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe-CCCCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHD-LRLLKVRL 357 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD-lr~~~~~l 357 (358)
....+..+...|....++++-. ||.|.+|| .|+.+.|+
T Consensus 194 nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl 232 (783)
T KOG1008|consen 194 NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL 232 (783)
T ss_pred hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHH
Confidence 2223445666774436777765 89999999 78777664
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-05 Score=76.17 Aligned_cols=116 Identities=19% Similarity=0.267 Sum_probs=80.0
Q ss_pred CeEEEEeCCCCCCeEEEE----eCCCc----EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEE
Q 018322 231 EGYAIDWNPITTGRLVTG----DCNSC----IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIA 302 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sg----s~dg~----I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (358)
...++.|+...+..+.|. +.+|. -++|++.......+ ...-....+.|.+++++|++. .|+.|+.||+|.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-svtsipL~s~v~~ca~sp~E~-kLvlGC~DgSii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-SVTSIPLPSQVICCARSPSED-KLVLGCEDGSII 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE-EEEEEecCCcceEEecCcccc-eEEEEecCCeEE
Confidence 345677776555455443 22332 24566643211111 112224678899999999998 999999999999
Q ss_pred EEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 303 IWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+||...+ +.......-..+.++|+|+| .++++|+..|.+.+||+.-
T Consensus 285 LyD~~~~---~t~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 285 LYDTTRG---VTLLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEcCCC---eeeeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeec
Confidence 9999863 22233344567899999999 8999999999999999863
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.4e-05 Score=66.17 Aligned_cols=170 Identities=14% Similarity=0.177 Sum_probs=103.6
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC-CCCCeEEEEeCCCC----
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNPIT---- 241 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~---- 241 (358)
.=.+++|+|++ .+||.+...|+|++||+....-.. ..|...+.+ -...|.+|.|.+..
T Consensus 45 QWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~----------------I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ 107 (282)
T PF15492_consen 45 QWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFV----------------IPPAMSFPGDLSDAIAGLIFLEYKKSAQ 107 (282)
T ss_pred hheEEEECCCC-cEEEEEcCCCeEEEEecccceeEE----------------cCcccccCCccccceeeeEeeccccccc
Confidence 34678999999 799999999999999997521111 011111111 12355556554432
Q ss_pred -CCeEEEEeCCCcEEEEecCCCC-CcccCCCc--ccc-CCCcEEEEEECCCCCCEEEEEEC-CC----------cEEEEE
Q 018322 242 -TGRLVTGDCNSCIYLWEPASDA-TWNVDPNP--FIG-HSASVEDLQWSPTEPDVFASCSV-DG----------HIAIWD 305 (358)
Q Consensus 242 -~~~l~sgs~dg~I~lwd~~~~~-~~~~~~~~--~~~-h~~~V~~v~~sp~~~~~las~s~-Dg----------~I~iwD 305 (358)
...|++-...|.++-|-+..+. +....... +.. +...|+++.++|.++ +|+.|+. .. -+.-|-
T Consensus 108 ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~~~~~s~a~~~GLtaWR 186 (282)
T PF15492_consen 108 WSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR-LLLVGGCEQNQDGMSKASSCGLTAWR 186 (282)
T ss_pred cceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC-EEEEeccCCCCCccccccccCceEEE
Confidence 1256666678877777653211 10100112 222 467899999999998 6665553 22 245564
Q ss_pred CCCCCC----------------------eeEEE------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 306 TRVGKS----------------------ALTSF------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 306 ~r~~~~----------------------~~~~~------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+-.+.. .+..+ ......|..++.+|+| .+||+...+|.|.+|++.+++.
T Consensus 187 iL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 187 ILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred EcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchh
Confidence 432110 00111 1234578999999999 9999999999999999988764
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.40 E-value=8e-05 Score=69.63 Aligned_cols=172 Identities=11% Similarity=0.108 Sum_probs=108.2
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEe---CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWA---DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s---~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..-......+.++|++..+.++.. ..|.|..|.+...... ...+............++.+
T Consensus 33 ~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~-----------------L~~~~~~~~~g~~p~~i~~~ 95 (345)
T PF10282_consen 33 VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT-----------------LTLLNSVPSGGSSPCHIAVD 95 (345)
T ss_dssp EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE-----------------EEEEEEEEESSSCEEEEEEC
T ss_pred ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce-----------------eEEeeeeccCCCCcEEEEEe
Confidence 344566677889998854444433 3678999998763111 12223333223355679999
Q ss_pred CCCCCeEEEEe-CCCcEEEEecCCCCCcccCCCcc----------ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 239 PITTGRLVTGD-CNSCIYLWEPASDATWNVDPNPF----------IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 239 ~~~~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~----------~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
|++. +|+++. .+|.|.++++...+........+ ........++.|+|+++.++++.-....|++|++.
T Consensus 96 ~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 96 PDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID 174 (345)
T ss_dssp TTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred cCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 9998 777765 58999999998754422111111 11234578999999999566655556689999997
Q ss_pred CCCCee---EEE-ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 308 VGKSAL---TSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 308 ~~~~~~---~~~-~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.....+ ..+ ......-+.+.|+|++..++++.-.+++|.++++.
T Consensus 175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 743212 222 23455688999999995566666778899999887
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-06 Score=78.30 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=101.5
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.+.|.++.|...+ .++..|...|.|...|++..... +..+...+ .|...|++|..-.....+
T Consensus 252 ksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG----------------~~~~a~rl-yh~Ssvtslq~Lq~s~q~ 313 (425)
T KOG2695|consen 252 KSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQG----------------NGWCAQRL-YHDSSVTSLQILQFSQQK 313 (425)
T ss_pred chhHHHHHhcccC-CeeEecccCCcEEEEEeeecccC----------------CCcceEEE-EcCcchhhhhhhccccce
Confidence 4678888888767 68999999999999999873211 23444444 578889999887733348
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEE--EECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe----c
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDL--QWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK----A 318 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v--~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~----~ 318 (358)
|++.+.+|+|.|||++. .+..+....+.||...-.-+ -..+.+. ++++++.|-..|||.++.+ ..+.++. +
T Consensus 314 LmaS~M~gkikLyD~R~-~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~GdDcytRiWsl~~g-hLl~tipf~~s~ 390 (425)
T KOG2695|consen 314 LMASDMTGKIKLYDLRA-TKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVGDDCYTRIWSLDSG-HLLCTIPFPYSA 390 (425)
T ss_pred EeeccCcCceeEeeehh-hhcccceeeeecccccccccccccccccc-eEEEccCeeEEEEEecccC-ceeeccCCCCcc
Confidence 99999999999999987 33322346778885433322 3455566 8888999999999999985 4555542 2
Q ss_pred CCCCeEEEEEe
Q 018322 319 HNADVNVISWN 329 (358)
Q Consensus 319 h~~~V~~i~~~ 329 (358)
....+.+++|.
T Consensus 391 ~e~d~~sv~~~ 401 (425)
T KOG2695|consen 391 SEVDIPSVAFD 401 (425)
T ss_pred ccccccceehh
Confidence 33356666664
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.6e-05 Score=71.21 Aligned_cols=169 Identities=11% Similarity=0.162 Sum_probs=105.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeEEEEeCCCCCCe
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~ 244 (358)
....++.++|++..++++--....|++|++......+ .+...+. ........+.|+|++.-.
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l-----------------~~~~~~~~~~G~GPRh~~f~pdg~~~ 206 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKL-----------------TPVDSIKVPPGSGPRHLAFSPDGKYA 206 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TE-----------------EEEEEEECSTTSSEEEEEE-TTSSEE
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceE-----------------EEeeccccccCCCCcEEEEcCCcCEE
Confidence 4567899999996666666666789999997732111 1112222 233467789999999834
Q ss_pred EEEEeCCCcEEEEecCC-CCCcccC--CCccc-c--CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC---eeEE
Q 018322 245 LVTGDCNSCIYLWEPAS-DATWNVD--PNPFI-G--HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS---ALTS 315 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~-~~~~~~~--~~~~~-~--h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~---~~~~ 315 (358)
.++.-.++.|.++++.. .+.+... ...+. + .......|+++|+++.++++.....+|.+|++..... .+..
T Consensus 207 Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 207 YVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred EEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 45566688999999973 2221100 01110 1 1236888999999997777777889999999943211 2333
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+.......+.++++|++..++++...++.|.+|++.
T Consensus 287 ~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 287 VPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 344455689999999994444444567799999763
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00016 Score=69.31 Aligned_cols=157 Identities=11% Similarity=0.082 Sum_probs=88.2
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
..+.+...+|+|++..++.+.+.+| .|.++++.. .. ...+..+........|+|+|
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~---------------------g~-~~~LT~~~~~d~~p~~SPDG 288 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT---------------------KT-LTQITNYPGIDVNGNFVEDD 288 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC---------------------Cc-EEEcccCCCccCccEECCCC
Confidence 4566667889999976776666554 466667654 11 22233333223355799999
Q ss_pred CCeEEEEeCCC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC--------CcEEEEECCCCCC
Q 018322 242 TGRLVTGDCNS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD--------GHIAIWDTRVGKS 311 (358)
Q Consensus 242 ~~~l~sgs~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D--------g~I~iwD~r~~~~ 311 (358)
..++++.+..+ .|++.++..+.... ..+.+. . ...|+|++..++++.... ..|.+.|+..+.
T Consensus 289 ~~I~F~Sdr~g~~~Iy~~dl~~g~~~r---lt~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~- 360 (419)
T PRK04043 289 KRIVFVSDRLGYPNIFMKKLNSGSVEQ---VVFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY- 360 (419)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEe---CccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-
Confidence 84444444444 56677775532211 112221 1 248999999444444332 367888887643
Q ss_pred eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCC--CEEEEeCCC
Q 018322 312 ALTSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRL 352 (358)
Q Consensus 312 ~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg--~i~iwDlr~ 352 (358)
...+.... ......|+|+|..++++....+ .|.+.++..
T Consensus 361 -~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 361 -IRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred -eEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 33443332 2335899999944444443333 366666654
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.8e-05 Score=72.66 Aligned_cols=97 Identities=14% Similarity=0.252 Sum_probs=73.1
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
.....+.+.+++|+.. .|+.|+.||.|.+||.+.+. ..+....-..+.++|||+|. +|+.|+..|.+.+||+
T Consensus 257 pL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~------t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 257 PLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGV------TLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDM 328 (545)
T ss_pred ecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCe------eeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEe
Confidence 4667899999999998 99999999999999986632 22333445678899999999 9999999999999998
Q ss_pred CCCC------------CeeEEE---ecCCCCeEEEEEeCC
Q 018322 307 RVGK------------SALTSF---KAHNADVNVISWNRL 331 (358)
Q Consensus 307 r~~~------------~~~~~~---~~h~~~V~~i~~~p~ 331 (358)
.-.. .....+ -.+...+-.+.|++.
T Consensus 329 ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~ 368 (545)
T PF11768_consen 329 ALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPA 368 (545)
T ss_pred ecCccceeeccccCCCccEEeeehhccCcchhheeEeccC
Confidence 6421 111222 234556777888843
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0004 Score=66.51 Aligned_cols=158 Identities=10% Similarity=0.016 Sum_probs=91.6
Q ss_pred CceeEEEEcCCCCcEEEEEeC---CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 166 GCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
+.+..-+|+|++..+++..+. ...|+++|+.. .... .+....+...+.+|+|++.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t---------------------g~~~-~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT---------------------GKKE-KIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC---------------------CcEE-EEecCCCcEEeeEECCCCC
Confidence 467789999999544554333 34688888865 2222 2223344556788999998
Q ss_pred CeEEEEeCC--CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC--cEEEEECCCCCCeeEEEec
Q 018322 243 GRLVTGDCN--SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--HIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 243 ~~l~sgs~d--g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--~I~iwD~r~~~~~~~~~~~ 318 (358)
.++++.+.+ ..|.++++..+ .. ..+..+........|+|++..++++....+ .|.+.|+..+. ...+..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g-~~----~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~--~~rlt~ 318 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTK-TL----TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS--VEQVVF 318 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCC-cE----EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC--eEeCcc
Confidence 444455444 46777787553 22 223333333344589999984555544444 56667776643 222322
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCC--------CCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDD--------GTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~D--------g~i~iwDlr~~~ 354 (358)
.... ...|+|+|..++++.... ..|.+.|+....
T Consensus 319 ~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 319 HGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred CCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 2211 248999994444444332 267778876654
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-06 Score=86.75 Aligned_cols=155 Identities=18% Similarity=0.247 Sum_probs=101.6
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCC-cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.-.|..+|+-|.-+.+|..+|.+.+... -..+|++.. ...+..+|.+ -.++.|+.
T Consensus 1139 ~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s--------------------~~~~~Hsf~e----d~~vkFsn 1194 (1516)
T KOG1832|consen 1139 VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS--------------------TGGPRHSFDE----DKAVKFSN 1194 (1516)
T ss_pred ccccccccccccccCCcceeeeeccccCchHHHhcccc--------------------ccCccccccc----cceeehhh
Confidence 3469999999998888865555544433 567999887 3566666654 44888988
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
... .-+.|.+.....|||+.+............+....-+...|+|... +++ .|| .+||+|.+ ..++.+...
T Consensus 1195 ~~q-~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl---ndG--vLWDvR~~-~aIh~FD~f 1266 (1516)
T KOG1832|consen 1195 SLQ-FRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL---NDG--VLWDVRIP-EAIHRFDQF 1266 (1516)
T ss_pred hHH-HHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe---eCc--eeeeeccH-HHHhhhhhh
Confidence 755 5566666678899999885543221222222233347788999987 554 344 37999985 566666443
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+. --.-.|+|+| .-++.-+ -|||+|+++
T Consensus 1267 t~-~~~G~FHP~g-~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1267 TD-YGGGGFHPSG-NEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred ee-cccccccCCC-ceEEeec-----hhhhhHHHH
Confidence 31 1223699999 5555544 389999875
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.9e-06 Score=75.49 Aligned_cols=92 Identities=14% Similarity=0.222 Sum_probs=76.3
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (358)
++...+.+|...|..|+|+|...|++..++.+..|.|.|+.+... ...+..+ ..+++++|..++.+++..|-..|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~----vssy~a~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV----VSSYIAY-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee----eeheecc-CCceeeeeccCCcceeEEeccCc
Confidence 334456778889999999999999999999999999999987332 2455556 78999999999999999999999
Q ss_pred cEEEEECCCCCCeeEEE
Q 018322 300 HIAIWDTRVGKSALTSF 316 (358)
Q Consensus 300 ~I~iwD~r~~~~~~~~~ 316 (358)
.|.|||+|.+..++..+
T Consensus 259 ~VlvyD~R~~~~~~~e~ 275 (463)
T KOG1645|consen 259 MVLVYDMRQPEGPLMEL 275 (463)
T ss_pred eEEEEEccCCCchHhhh
Confidence 99999999876555444
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2e-06 Score=80.79 Aligned_cols=130 Identities=19% Similarity=0.295 Sum_probs=89.3
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcc---cCCCccccCCCcEEEEEECCCCCCEEEEEE
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN---VDPNPFIGHSASVEDLQWSPTEPDVFASCS 296 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~las~s 296 (358)
..+..+.||+..|.+++--.+.+ -+++++.|++|++|.++..+.-. ....+++.|+.+|+++-|-.+.+ .++ +
T Consensus 726 irL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~--S 801 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIA--S 801 (1034)
T ss_pred eeeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eee--e
Confidence 34567889999888877655554 89999999999999998754322 12456888999999999987776 555 4
Q ss_pred CCCcEEEEECCCCCCeeEEE--ecCCCCeEEEEEeCC-CCcEEEE-EeCCCCEEEEeCCCCC
Q 018322 297 VDGHIAIWDTRVGKSALTSF--KAHNADVNVISWNRL-ASCLLAS-GSDDGTFSIHDLRLLK 354 (358)
Q Consensus 297 ~Dg~I~iwD~r~~~~~~~~~--~~h~~~V~~i~~~p~-~~~~las-gs~Dg~i~iwDlr~~~ 354 (358)
.||.|.+||.--+. ++..+ ....+.+..|..-++ ...++.. ++...+|+++|.|...
T Consensus 802 cD~giHlWDPFigr-~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred ccCcceeecccccc-hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc
Confidence 57999999987643 33222 112223444444443 2244444 4678899999999764
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00019 Score=66.83 Aligned_cols=145 Identities=14% Similarity=0.155 Sum_probs=106.0
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCC-cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.++|.+.|.-.++..++ .-++.|..|| .+-|||... ..+..+...-+.|.++..++
T Consensus 355 qv~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~----------------------~e~kr~e~~lg~I~av~vs~ 411 (668)
T COG4946 355 QVGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDG----------------------GEVKRIEKDLGNIEAVKVSP 411 (668)
T ss_pred EcCCCCceEEEEEccCC-cceEEeccCCceEEEEecCC----------------------ceEEEeeCCccceEEEEEcC
Confidence 45688888888887776 4788889999 899999887 33455666677999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC----cEEEEECCCCCCeeEE
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG----HIAIWDTRVGKSALTS 315 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg----~I~iwD~r~~~~~~~~ 315 (358)
+|. +++.+.....|.+.|+.++.... .-...-+-|+++.|||+++ +||-+--+| .|+++|+..++ +..
T Consensus 412 dGK-~~vvaNdr~el~vididngnv~~----idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~K--iy~ 483 (668)
T COG4946 412 DGK-KVVVANDRFELWVIDIDNGNVRL----IDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGK--IYD 483 (668)
T ss_pred CCc-EEEEEcCceEEEEEEecCCCeeE----ecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCe--EEE
Confidence 998 89999888899999998854322 1223457899999999999 888766554 79999998743 333
Q ss_pred EecCCCCeEEEEEeCCCCcEEE
Q 018322 316 FKAHNADVNVISWNRLASCLLA 337 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~la 337 (358)
+....+-=.+-+|.|++ ++|.
T Consensus 484 vTT~ta~DfsPaFD~d~-ryLY 504 (668)
T COG4946 484 VTTPTAYDFSPAFDPDG-RYLY 504 (668)
T ss_pred ecCCcccccCcccCCCC-cEEE
Confidence 33222223445788888 5443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00046 Score=72.19 Aligned_cols=172 Identities=17% Similarity=0.260 Sum_probs=107.7
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeC---CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc--CCCC
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKD 230 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~ 230 (358)
.+.....+-.|--.+++|.|+| ++||+.-. ...|.+|.-+.. ..-.+.+. ....
T Consensus 247 ~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErNGL--------------------rhgeF~l~~~~~~~ 305 (928)
T PF04762_consen 247 ELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERNGL--------------------RHGEFTLRFDPEEE 305 (928)
T ss_pred eEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecCCc--------------------EeeeEecCCCCCCc
Confidence 3444444445556678999999 67877554 234666665541 11112222 3455
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC--
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV-- 308 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~-- 308 (358)
.|..|.|++++. .||..-.+ .|.+|-..+ -.|.............+..+.|+|..+..|...+.+|.+..++...
T Consensus 306 ~v~~l~Wn~ds~-iLAv~~~~-~vqLWt~~N-YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 306 KVIELAWNSDSE-ILAVWLED-RVQLWTRSN-YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV 382 (928)
T ss_pred eeeEEEECCCCC-EEEEEecC-CceEEEeeC-CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence 789999999998 88887755 499999866 3443211111122334555999998887787777767776654421
Q ss_pred --CC-----------------------------CeeEEE-ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 309 --GK-----------------------------SALTSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 309 --~~-----------------------------~~~~~~-~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+. .|+..+ -.-.+.|+.++|++.+ ..+|+-..||.|.+|....
T Consensus 383 ~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~-~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 383 SRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN-SRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC-CeEEEEECCCCEEEEEecC
Confidence 10 011111 1235679999999998 5688888999999988543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00028 Score=66.16 Aligned_cols=155 Identities=19% Similarity=0.235 Sum_probs=100.6
Q ss_pred CCceeEEEEcCCC-CcEEEEE-----eCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 165 QGCVNRIRAMTQN-PHICASW-----ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 165 ~~~V~~i~~~p~~-~~~lat~-----s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
...|....++|.+ ...||.+ +..++++||.+.. ..++.+..-.+.....|.|+
T Consensus 173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~---------------------~s~l~tk~lfk~~~~qLkW~ 231 (561)
T COG5354 173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK---------------------NSVLVTKNLFKVSGVQLKWQ 231 (561)
T ss_pred ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC---------------------CCeeeeeeeEeecccEEEEe
Confidence 3566777788863 2335554 4567899999985 23332222223345579999
Q ss_pred CCCCCeEEE-Ee----------CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE--CCCcEEEEE
Q 018322 239 PITTGRLVT-GD----------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWD 305 (358)
Q Consensus 239 ~~~~~~l~s-gs----------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD 305 (358)
+.|. +|+. .- ...+++|++++.... .....-.++|.+++|.|.+. -|++++ ....+.++|
T Consensus 232 ~~g~-~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-----~V~~~~~~pVhdf~W~p~S~-~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 232 VLGK-YLLVLVMTHTKSNKSYFGESNLYLLRITERSI-----PVEKDLKDPVHDFTWEPLSS-RFAVISGYMPASVSVFD 304 (561)
T ss_pred cCCc-eEEEEEEEeeecccceeccceEEEEeeccccc-----ceeccccccceeeeecccCC-ceeEEecccccceeecc
Confidence 9987 4332 21 124677888864222 11124578999999999987 666655 688999999
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCC---CCEEEEeCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRL 352 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~D---g~i~iwDlr~ 352 (358)
+|.. ..+..-...=|.+.|+|.+ ++++.++.| |.+-|||...
T Consensus 305 lr~N----l~~~~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 305 LRGN----LRFYFPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred cccc----eEEecCCcccccccccCcc-cEEEEecCCccccceEEeccCC
Confidence 9972 3344455566888899988 777776654 6788888643
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00018 Score=76.42 Aligned_cols=121 Identities=13% Similarity=0.131 Sum_probs=79.6
Q ss_pred eEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccC----CCcccc------CCCcEEEEEECCCCCCEEEEEECCCcE
Q 018322 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD----PNPFIG------HSASVEDLQWSPTEPDVFASCSVDGHI 301 (358)
Q Consensus 232 v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~----~~~~~~------h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (358)
.++|+++|.+..++++...++.|++||..++...... .....+ .-.....|+|+|++..++++-+.++.|
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 4589999954436677777899999998653211000 000111 113456799999988677888888999
Q ss_pred EEEECCCCCCeeEE------------Eec--------CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 302 AIWDTRVGKSALTS------------FKA--------HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 302 ~iwD~r~~~~~~~~------------~~~--------h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
++||+.++...+.. +.. .-.....++|+++| .++++-+.++.|++||..+.
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCC
Confidence 99999864321110 000 01124578999999 78888889999999998754
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.9e-06 Score=74.20 Aligned_cols=85 Identities=20% Similarity=0.338 Sum_probs=74.8
Q ss_pred ccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 271 PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 271 ~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.+.+|...|.+++|+|....++..++.+..|+|.|+++. ..+..+.+| ..+++++|..+..++|..|-.+|.|.|||+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~-~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS-CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccc-eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 456688899999999988878999999999999999983 567777877 679999999999899999999999999999
Q ss_pred CCCCCCC
Q 018322 351 RLLKVRL 357 (358)
Q Consensus 351 r~~~~~l 357 (358)
|+...++
T Consensus 266 R~~~~~~ 272 (463)
T KOG1645|consen 266 RQPEGPL 272 (463)
T ss_pred cCCCchH
Confidence 9987654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00018 Score=70.91 Aligned_cols=159 Identities=18% Similarity=0.270 Sum_probs=104.3
Q ss_pred EEEecCCCceeEEEEcCC-------------CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQ-------------NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~-------------~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
+.+-.|.|.|.-..+.-. | .++||||.||+|.|..+-+ .+...++
T Consensus 52 ~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~G-ey~asCS~DGkv~I~sl~~---------------------~~~~~~~ 109 (846)
T KOG2066|consen 52 FALGTHRGAVYLTTCQGNPKTNFDHSSSILEG-EYVASCSDDGKVVIGSLFT---------------------DDEITQY 109 (846)
T ss_pred eeeccccceEEEEecCCcccccccccccccCC-ceEEEecCCCcEEEeeccC---------------------CccceeE
Confidence 455568888877766544 4 7999999999999988876 2222223
Q ss_pred cCCCCCeEEEEeCCC----CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcE
Q 018322 226 GGHKDEGYAIDWNPI----TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHI 301 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~----~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I 301 (358)
. ...++.+++++|+ ..+++++|+..| +.++.-+-.+.+. ......-.++|.+++|. |. ++|-++.+| |
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~--~v~l~~~eG~I~~i~W~--g~-lIAWand~G-v 181 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD--SVVLSEGEGPIHSIKWR--GN-LIAWANDDG-V 181 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc--ceeeecCccceEEEEec--Cc-EEEEecCCC-c
Confidence 2 2358889999998 233899999888 7777644333322 11234456899999997 44 777777655 8
Q ss_pred EEEECCCCCCeeEEEe-cCCC-----CeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 302 AIWDTRVGKSALTSFK-AHNA-----DVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 302 ~iwD~r~~~~~~~~~~-~h~~-----~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
++||+.+. +.+..+. .+.. --..+.|.+.. .|+.|=. .+|+|..++
T Consensus 182 ~vyd~~~~-~~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTR-QRLTNIPPPSQSVRPELFPPHLHWQDED--RLVIGWG-DSVKICSIK 233 (846)
T ss_pred EEEecccc-ceeeccCCCCCCCCcccCCCceEecCCC--eEEEecC-CeEEEEEEe
Confidence 99999874 3333332 2211 12456787766 4445433 368888877
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.1e-06 Score=84.09 Aligned_cols=169 Identities=21% Similarity=0.284 Sum_probs=114.1
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeC----CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWAD----TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
-+|...+++++|++-....||.|-+ |..+.|||+....... ...+.+.- +-.....+++|
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP---------------ke~~~fs~-~~l~gqns~cw 162 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP---------------KESPLFSS-STLDGQNSVCW 162 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC---------------cccccccc-ccccCcccccc
Confidence 3578899999999986667777643 5679999998843211 01121111 12234458999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE-CCCCCCeeEEE
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD-TRVGKSALTSF 316 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD-~r~~~~~~~~~ 316 (358)
-.+.+ ++++|.....++++|++.... ....-.+..|..+...|-..++|++-. ||.|.+|| .|.-..++..+
T Consensus 163 lrd~k-lvlaGm~sr~~~ifdlRqs~~-----~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i 235 (783)
T KOG1008|consen 163 LRDTK-LVLAGMTSRSVHIFDLRQSLD-----SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQII 235 (783)
T ss_pred ccCcc-hhhcccccchhhhhhhhhhhh-----hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHH
Confidence 97776 889999889999999985322 111223456677788886555787766 99999999 55544444443
Q ss_pred ecCC----CCeEEEEEeCCCCcEEEEEeCC-CCEEEEeCCCC
Q 018322 317 KAHN----ADVNVISWNRLASCLLASGSDD-GTFSIHDLRLL 353 (358)
Q Consensus 317 ~~h~----~~V~~i~~~p~~~~~lasgs~D-g~i~iwDlr~~ 353 (358)
.... ..+..++|+|....++++...| ++|+++|++.-
T Consensus 236 ~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 236 LRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred hhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 2222 2489999999876788887765 68999998754
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.002 Score=58.20 Aligned_cols=175 Identities=12% Similarity=0.110 Sum_probs=109.9
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeC--CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWAD--TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
..+..+.+..+-+.|+|++..+.+.... .|.|-.|.+......+ ..+........+-..++
T Consensus 33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-----------------t~ln~~~~~g~~p~yvs 95 (346)
T COG2706 33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-----------------TFLNRQTLPGSPPCYVS 95 (346)
T ss_pred hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-----------------EEeeccccCCCCCeEEE
Confidence 4455677888889999988444444333 5778888877521111 11111111122336799
Q ss_pred eCCCCCCeEEEEeC-CCcEEEEecCCCCCcccCCCccccCCCc----------EEEEEECCCCCCEEEEEE-CCCcEEEE
Q 018322 237 WNPITTGRLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSAS----------VEDLQWSPTEPDVFASCS-VDGHIAIW 304 (358)
Q Consensus 237 ~s~~~~~~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~----------V~~v~~sp~~~~~las~s-~Dg~I~iw 304 (358)
.++++. +++++.. .|.|.++-++..+.... ......|.+. +....+.|+++ +++++. .--.|.+|
T Consensus 96 vd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~-~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y 172 (346)
T COG2706 96 VDEDGR-FVFVANYHSGSVSVYPLQADGSLQP-VVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLY 172 (346)
T ss_pred ECCCCC-EEEEEEccCceEEEEEcccCCcccc-ceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEE
Confidence 999998 7777754 68999999977544221 1122334444 88899999999 555554 34479999
Q ss_pred ECCCCCCeeE--EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 305 DTRVGKSALT--SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 305 D~r~~~~~~~--~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
++..+.-... ..-.-+..-..|.|+|++....+.+--+++|.+|.....
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 9986432111 111345567889999999444445556899999998764
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0018 Score=60.97 Aligned_cols=114 Identities=16% Similarity=0.274 Sum_probs=78.4
Q ss_pred CCCCCeEEEEeCCCCCCeEEEE--eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC---CCcE
Q 018322 227 GHKDEGYAIDWNPITTGRLVTG--DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV---DGHI 301 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sg--s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~---Dg~I 301 (358)
.-.++|+.++|+|.+. .+++. -....+.++|++.. . .+..-...=+.+.|+|.++ +++.++. .|.|
T Consensus 272 ~~~~pVhdf~W~p~S~-~F~vi~g~~pa~~s~~~lr~N--l-----~~~~Pe~~rNT~~fsp~~r-~il~agF~nl~gni 342 (561)
T COG5354 272 DLKDPVHDFTWEPLSS-RFAVISGYMPASVSVFDLRGN--L-----RFYFPEQKRNTIFFSPHER-YILFAGFDNLQGNI 342 (561)
T ss_pred cccccceeeeecccCC-ceeEEecccccceeecccccc--e-----EEecCCcccccccccCccc-EEEEecCCccccce
Confidence 5578999999999998 55444 57889999999763 1 1222334445678999999 5555544 4789
Q ss_pred EEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEe------CCCCEEEEeCCC
Q 018322 302 AIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGS------DDGTFSIHDLRL 352 (358)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs------~Dg~i~iwDlr~ 352 (358)
-+||......++..+.+-+ ...+.|+|++ .++.+.- .|..|+|||+..
T Consensus 343 ~i~~~~~rf~~~~~~~~~n--~s~~~wspd~-qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 343 EIFDPAGRFKVAGAFNGLN--TSYCDWSPDG-QFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEeccCCceEEEEEeecCC--ceEeeccCCc-eEEEecCCCcccccCcceEEEEecC
Confidence 9999876433333454433 3557899999 5555442 378999999864
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0013 Score=61.39 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=107.0
Q ss_pred CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCC-cEEE
Q 018322 178 PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNS-CIYL 256 (358)
Q Consensus 178 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg-~I~l 256 (358)
..++|..|. |++.|.+... .+. .-.+|...|.-..+..+.. -++.|..|| .+-+
T Consensus 332 Gd~ia~VSR-GkaFi~~~~~----------------------~~~-iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~i 386 (668)
T COG4946 332 GDYIALVSR-GKAFIMRPWD----------------------GYS-IQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGI 386 (668)
T ss_pred CcEEEEEec-CcEEEECCCC----------------------Cee-EEcCCCCceEEEEEccCCc-ceEEeccCCceEEE
Confidence 357777665 6777766543 222 2236677788888888887 889999999 9999
Q ss_pred EecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEE
Q 018322 257 WEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLL 336 (358)
Q Consensus 257 wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~l 336 (358)
+|...+.. ..+...-+.|.++..+|+|. .++.+.....|.+.|+.++...+ .-+...+-|+.+.|+|++ ++|
T Consensus 387 yd~~~~e~-----kr~e~~lg~I~av~vs~dGK-~~vvaNdr~el~vididngnv~~-idkS~~~lItdf~~~~ns-r~i 458 (668)
T COG4946 387 YDKDGGEV-----KRIEKDLGNIEAVKVSPDGK-KVVVANDRFELWVIDIDNGNVRL-IDKSEYGLITDFDWHPNS-RWI 458 (668)
T ss_pred EecCCceE-----EEeeCCccceEEEEEcCCCc-EEEEEcCceEEEEEEecCCCeeE-ecccccceeEEEEEcCCc-eeE
Confidence 99976432 34555668899999999998 78888888899999999864222 224456679999999999 899
Q ss_pred EEEeCCC----CEEEEeCCCCC
Q 018322 337 ASGSDDG----TFSIHDLRLLK 354 (358)
Q Consensus 337 asgs~Dg----~i~iwDlr~~~ 354 (358)
|-+--+| .|+++|+...+
T Consensus 459 AYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 459 AYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EEecCcceeeeeEEEEecCCCe
Confidence 8876554 68999987754
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.011 Score=53.49 Aligned_cols=163 Identities=12% Similarity=0.100 Sum_probs=100.0
Q ss_pred eeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE-
Q 018322 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV- 246 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~- 246 (358)
+....+.|++..++++--..-+|.+|++....... ..+.. + .-...-..|.|+|+++ +..
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~----------------~~~~~-v-~~G~GPRHi~FHpn~k-~aY~ 207 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP----------------ADPAE-V-KPGAGPRHIVFHPNGK-YAYL 207 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCcccc----------------ccccc-c-CCCCCcceEEEcCCCc-EEEE
Confidence 88889999995444444444579999998421100 11111 1 2233556899999998 544
Q ss_pred EEeCCCcEEEEecCCCCCccc-------CCCccccCCCcEEEEEECCCCCCEEEEEE-CCCcEEEEECCCCCCeeEEE--
Q 018322 247 TGDCNSCIYLWEPASDATWNV-------DPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRVGKSALTSF-- 316 (358)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~-------~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~~~~~~~~~-- 316 (358)
++--+++|-+|.......... ....|.+ .....+|..+|+|+ +|.++. ....|.+|-+......+..+
T Consensus 208 v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g-~~~~aaIhis~dGr-FLYasNRg~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 208 VNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG-TNWAAAIHISPDGR-FLYASNRGHDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred EeccCCEEEEEEEcCCCceEEEeeeeccCccccCC-CCceeEEEECCCCC-EEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence 455689999999976422111 1122332 34677899999999 444433 34588888776543332222
Q ss_pred -ecCCCCeEEEEEeCCCCcEEEEEe-CCCCEEEEeCCC
Q 018322 317 -KAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRL 352 (358)
Q Consensus 317 -~~h~~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDlr~ 352 (358)
..+...-....|++.+ .+|+.++ ....|.+|-...
T Consensus 286 ~~teg~~PR~F~i~~~g-~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 286 TPTEGQFPRDFNINPSG-RFLIAANQKSDNITVFERDK 322 (346)
T ss_pred eccCCcCCccceeCCCC-CEEEEEccCCCcEEEEEEcC
Confidence 3344556888999999 5555555 445788887653
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00071 Score=70.83 Aligned_cols=160 Identities=16% Similarity=0.254 Sum_probs=101.1
Q ss_pred CCCceeEEEEcCCCCcEEEEEeC---C---CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 164 HQGCVNRIRAMTQNPHICASWAD---T---GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~---d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
+...-.+|+|-.+| .+||+.+- . ..++||+-...+.+. ..++. +--.+|+|
T Consensus 208 ~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~ReG~L~st----------------SE~v~------gLe~~l~W 264 (928)
T PF04762_consen 208 WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSREGELQST----------------SEPVD------GLEGALSW 264 (928)
T ss_pred cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCCceEEec----------------cccCC------CccCCccC
Confidence 45566789999999 67777664 3 468999987532211 11211 12337999
Q ss_pred CCCCCCeEEEEeC---CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee-
Q 018322 238 NPITTGRLVTGDC---NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL- 313 (358)
Q Consensus 238 s~~~~~~l~sgs~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~- 313 (358)
.|.|. ++|+... ...|.+|.- ++-+...-..++......|..++|++++. +||..-.|. |.+|-+.....-+
T Consensus 265 rPsG~-lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~-iLAv~~~~~-vqLWt~~NYHWYLK 340 (928)
T PF04762_consen 265 RPSGN-LIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSE-ILAVWLEDR-VQLWTRSNYHWYLK 340 (928)
T ss_pred CCCCC-EEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCC-EEEEEecCC-ceEEEeeCCEEEEE
Confidence 99998 8888764 346666663 32221100112234556899999999998 888877555 9999877643211
Q ss_pred EEEe-cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 314 TSFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 314 ~~~~-~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+.+. .....+..+.|+|..+..|.....+|.+.+++.
T Consensus 341 qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 341 QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 2222 223345569999988777777777677765543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.7e-05 Score=76.27 Aligned_cols=156 Identities=14% Similarity=0.179 Sum_probs=109.3
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
+..|....+|++|+-.. +.|+.|+..|.|++|++.. +.......+|...++-+.-+.+
T Consensus 1097 frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~s---------------------G~~e~s~ncH~SavT~vePs~d 1154 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSS---------------------GSMEESVNCHQSAVTLVEPSVD 1154 (1516)
T ss_pred hhccccceeeEEeecCC-ceEEeeeccceEEEEEccC---------------------ccccccccccccccccccccCC
Confidence 34578899999999877 7999999999999999987 5556678899999999999999
Q ss_pred CCCeEEEEeCCC-cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE-Ee-
Q 018322 241 TTGRLVTGDCNS-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS-FK- 317 (358)
Q Consensus 241 ~~~~l~sgs~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~-~~- 317 (358)
|.-+|.+++... -..+|++.+.+... ..|. .-.++.|+.... .-+.|..-....|||+.+.. ++.+ +.
T Consensus 1155 gs~~Ltsss~S~PlsaLW~~~s~~~~~---Hsf~----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~-~l~tylt~ 1225 (1516)
T KOG1832|consen 1155 GSTQLTSSSSSSPLSALWDASSTGGPR---HSFD----EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCS-PLQTYLTD 1225 (1516)
T ss_pred cceeeeeccccCchHHHhccccccCcc---cccc----ccceeehhhhHH-HHHhcccccceEEEecccCc-HHHHhcCc
Confidence 883444444444 57899986633322 3333 345678887654 33334444678899999854 4443 21
Q ss_pred --cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 318 --AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 318 --~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+.+..-|+..|+|.. .+|+ .|| .+||.|..
T Consensus 1226 ~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred chhhhhhccccccCCCc-ceEe---eCc--eeeeeccH
Confidence 122233888999999 7776 455 46999975
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00023 Score=69.38 Aligned_cols=115 Identities=18% Similarity=0.292 Sum_probs=86.8
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCC-----------cccCCCccccCCCcEEEEEECCCCCCEEEEEECC
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT-----------WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (358)
....|+.|+.... ++|.|+.||.+++..+.+... .....+++.||+.+|.-+.|+.+.+ .+-|...+
T Consensus 15 vkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccCCC
Confidence 3678999998775 999999999999987754211 1112356789999999999999888 89999999
Q ss_pred CcEEEEECCCCCCeeEEE-ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEE
Q 018322 299 GHIAIWDTRVGKSALTSF-KAHNADVNVISWNRLASCLLASGSDDGTFSI 347 (358)
Q Consensus 299 g~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~i 347 (358)
|.|.+|-+-.+..+-..+ ....+.|.+++|+-+| ..|+..-.||.|.+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIV 141 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEE
Confidence 999999987754332222 3456678999999999 66666666666544
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00025 Score=68.19 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=74.2
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE-EEEeCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY-AIDWNPITT 242 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~ 242 (358)
-.-.|.++.|+|.- .++|++..+|.|.++.++- +.+.++.-|..+++ +++|.|+|.
T Consensus 19 l~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n~----------------------qRlwtip~p~~~v~~sL~W~~DGk 75 (665)
T KOG4640|consen 19 LPINIKRIEWNPKM-DLIATRTEKGELLIHRLNW----------------------QRLWTIPIPGENVTASLCWRPDGK 75 (665)
T ss_pred cccceEEEEEcCcc-chhheeccCCcEEEEEecc----------------------ceeEeccCCCCccceeeeecCCCC
Confidence 35678889999998 6999999999999998874 55666766666666 999999998
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP 286 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp 286 (358)
.||.|-.||+|++.|+.+++... .....-...|.++-|++
T Consensus 76 -llaVg~kdG~I~L~Dve~~~~l~---~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 76 -LLAVGFKDGTIRLHDVEKGGRLV---SFLFSVETDISKGIWDR 115 (665)
T ss_pred -EEEEEecCCeEEEEEccCCCcee---ccccccccchheeeccc
Confidence 99999999999999998865432 11122345667777764
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00038 Score=69.55 Aligned_cols=146 Identities=19% Similarity=0.267 Sum_probs=99.7
Q ss_pred CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEE
Q 018322 178 PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLW 257 (358)
Q Consensus 178 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lw 257 (358)
+..++-|+-...+..+|++. .+......-....++-+.- ++. .|.+|+..|+|.|-
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~---------------------~~e~r~~~v~a~~v~imR~--Nnr-~lf~G~t~G~V~Lr 202 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNT---------------------EKETRTTNVSASGVTIMRY--NNR-NLFCGDTRGTVFLR 202 (1118)
T ss_pred Ccceeecchhhheeeeeccc---------------------ceeeeeeeccCCceEEEEe--cCc-EEEeecccceEEee
Confidence 34566666666777788776 2222323222234554444 344 89999999999999
Q ss_pred ecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC---------CCcEEEEECCCCCCeeEEEecCCCCeEEEEE
Q 018322 258 EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV---------DGHIAIWDTRVGKSALTSFKAHNADVNVISW 328 (358)
Q Consensus 258 d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~---------Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~ 328 (358)
|+++... .+.+..|++.|.++.. .|+ +|++|+. |..|+|||+|+.+ .+.-+.-+.++ .-+.|
T Consensus 203 D~~s~~~----iht~~aHs~siSDfDv--~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~~~~~P-~flrf 273 (1118)
T KOG1275|consen 203 DPNSFET----IHTFDAHSGSISDFDV--QGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQFPYGP-QFLRF 273 (1118)
T ss_pred cCCcCce----eeeeeccccceeeeec--cCC-eEEEeecccccccccccchhhhhhhhhhh-ccCCcccccCc-hhhhh
Confidence 9987433 4789999999987765 465 8999986 5678999999854 22223333332 45688
Q ss_pred eCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 329 NRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 329 ~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
.|.-...++.++..|++.+-|...+..|
T Consensus 274 ~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 274 HPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred cccccceEEEEecccceeeccccccCCC
Confidence 8887778888888999999995554444
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0005 Score=63.68 Aligned_cols=169 Identities=12% Similarity=0.132 Sum_probs=113.6
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeC-CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWAD-TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
....|.+.|..+..+-++ .+++|.+. |..+++||+... ..+..+.----+. .+.|.
T Consensus 48 hFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~---------------------DminmiKL~~lPg-~a~wv 104 (558)
T KOG0882|consen 48 HFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENF---------------------DMINMIKLVDLPG-FAEWV 104 (558)
T ss_pred hhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeecc---------------------chhhhcccccCCC-ceEEe
Confidence 345688899999999888 89999787 999999999762 1111111100111 22332
Q ss_pred C-CC--CCeEEE-EeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC----CC
Q 018322 239 P-IT--TGRLVT-GDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV----GK 310 (358)
Q Consensus 239 ~-~~--~~~l~s-gs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~----~~ 310 (358)
. .| ...|++ .-.+|.|.++|-....... ...-.-|.++|..+.+++.+. .++|....|.|.-|.... +.
T Consensus 105 ~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~--~~fkklH~sPV~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr 181 (558)
T KOG0882|consen 105 TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD--GYFKKLHFSPVKKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQFPR 181 (558)
T ss_pred cCCCCeeeeEEeecccCCCcEEECCcCCcCcc--ceecccccCceEEEEeecccc-ceeeccccceeEeecCCCcccCcc
Confidence 1 12 113443 3457899999987644322 122233999999999999998 888999999999998762 11
Q ss_pred C-e---------eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 311 S-A---------LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 311 ~-~---------~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
. . +..+........++.|+|++ ..+++-+.|..|+++++++++.
T Consensus 182 ~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 182 TNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccccccccccchhhcccccccCccceEEcccc-CcccccCcccEEEEEEeccchh
Confidence 1 0 11112234457889999999 8899989999999999998763
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.006 Score=58.15 Aligned_cols=126 Identities=13% Similarity=0.262 Sum_probs=80.3
Q ss_pred CCCcEEEcCCCCCeEEEEeCCCCCCeEEEEe---CCCcEEEEecCC-CCCcccCCCccccCCCcEEEEEECCCCCCEEEE
Q 018322 219 QSPLVKFGGHKDEGYAIDWNPITTGRLVTGD---CNSCIYLWEPAS-DATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (358)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs---~dg~I~lwd~~~-~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (358)
..|+-.+ .-...|...+|-|.|. .+++-+ ...++.+|-+.+ ...+. ....+ .....+.|.|+|.|+.+++.
T Consensus 436 dIpve~v-elke~vi~FaWEP~gd-kF~vi~g~~~k~tvsfY~~e~~~~~~~-lVk~~--dk~~~N~vfwsPkG~fvvva 510 (698)
T KOG2314|consen 436 DIPVEVV-ELKESVIAFAWEPHGD-KFAVISGNTVKNTVSFYAVETNIKKPS-LVKEL--DKKFANTVFWSPKGRFVVVA 510 (698)
T ss_pred CCCceee-ecchheeeeeeccCCC-eEEEEEccccccceeEEEeecCCCchh-hhhhh--cccccceEEEcCCCcEEEEE
Confidence 4455444 2356889999999998 665543 235788888874 22222 11222 23567889999999943333
Q ss_pred --EECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC------CCCEEEEeCC
Q 018322 295 --CSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD------DGTFSIHDLR 351 (358)
Q Consensus 295 --~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~------Dg~i~iwDlr 351 (358)
+|..|.+.++|+.... +...-.+.....+.+-|.|.| ++++|++. |.--+||+.+
T Consensus 511 ~l~s~~g~l~F~D~~~a~-~k~~~~~eh~~at~veWDPtG-RYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 511 ALVSRRGDLEFYDTDYAD-LKDTASPEHFAATEVEWDPTG-RYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred EecccccceEEEecchhh-hhhccCccccccccceECCCC-CEEEEeeehhhhccccceEEEEee
Confidence 3457899999987521 222222222346788999999 99999875 4456677664
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0066 Score=60.72 Aligned_cols=168 Identities=10% Similarity=0.104 Sum_probs=103.9
Q ss_pred EEecCCCc-eeEEEEcCCCCcEEEEEeCCC-----cEEEEeCCCCccccccccccccCCCCCCCCCCCc--EEEcC----
Q 018322 160 RKVAHQGC-VNRIRAMTQNPHICASWADTG-----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL--VKFGG---- 227 (358)
Q Consensus 160 ~~~~H~~~-V~~i~~~p~~~~~lat~s~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---- 227 (358)
-+.++... |.-+.... +..+|++-+.|+ .|+||++......- ....+ ..+..
T Consensus 59 ~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~---------------sP~c~~~~ri~~~~np 122 (933)
T KOG2114|consen 59 GFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN---------------SPQCLYEHRIFTIKNP 122 (933)
T ss_pred hheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC---------------CcceeeeeeeeccCCC
Confidence 34445544 44333333 335777766665 48999998731100 01111 11122
Q ss_pred -CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecC---CCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 228 -HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPA---SDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 228 -h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~---~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
...++.+|+.+.+-. .+|.|-.+|.|.++.-. ..+.. ..-...-..+|+.+.+..++..+ +.+..-..|.+
T Consensus 123 ~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr---~~~~~~~~~pITgL~~~~d~~s~-lFv~Tt~~V~~ 197 (933)
T KOG2114|consen 123 TNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSR---QDYSHRGKEPITGLALRSDGKSV-LFVATTEQVML 197 (933)
T ss_pred CCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccc---eeeeccCCCCceeeEEecCCcee-EEEEecceeEE
Confidence 234788899988876 99999999999988532 21211 11122235789999998888743 34444568999
Q ss_pred EECCCCCCeeEE-EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 304 WDTRVGKSALTS-FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 304 wD~r~~~~~~~~-~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
|.+.. +.+... +..|+..++|.+|++....++++++ .-|.+||..
T Consensus 198 y~l~g-r~p~~~~ld~~G~~lnCss~~~~t~qfIca~~--e~l~fY~sd 243 (933)
T KOG2114|consen 198 YSLSG-RTPSLKVLDNNGISLNCSSFSDGTYQFICAGS--EFLYFYDSD 243 (933)
T ss_pred EEecC-CCcceeeeccCCccceeeecCCCCccEEEecC--ceEEEEcCC
Confidence 99884 444444 6889999999999987734555554 357777764
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.006 Score=56.35 Aligned_cols=196 Identities=16% Similarity=0.116 Sum_probs=109.7
Q ss_pred eEEEEEeecCCCC-----CCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEec
Q 018322 89 TAYFVAGTQAEKP-----SWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVA 163 (358)
Q Consensus 89 ~~~~v~GT~~~~~-----~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (358)
..|+++||.-... ..+.|+++++... ... ...........
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~--------------------------------~~~---~~~l~~i~~~~ 86 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISES--------------------------------PEN---NFKLKLIHSTE 86 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS----------------------------------------EEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcc--------------------------------ccc---ceEEEEEEEEe
Confidence 3799999985432 2278999998411 000 02222345556
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
..++|++|... .+ .++++.+ +.|++|++.... . ..+...+..+ ..+.++... +.
T Consensus 87 ~~g~V~ai~~~-~~-~lv~~~g--~~l~v~~l~~~~-~-----------------l~~~~~~~~~-~~i~sl~~~--~~- 140 (321)
T PF03178_consen 87 VKGPVTAICSF-NG-RLVVAVG--NKLYVYDLDNSK-T-----------------LLKKAFYDSP-FYITSLSVF--KN- 140 (321)
T ss_dssp ESS-EEEEEEE-TT-EEEEEET--TEEEEEEEETTS-S-----------------EEEEEEE-BS-SSEEEEEEE--TT-
T ss_pred ecCcceEhhhh-CC-EEEEeec--CEEEEEEccCcc-c-----------------chhhheecce-EEEEEEecc--cc-
Confidence 78999999988 34 4555443 789999998721 0 1122222222 255555554 44
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC------CC-eeEE-
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG------KS-ALTS- 315 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~------~~-~~~~- 315 (358)
+++.|+.-..|.++..+....... ...-......++++.|-+++. .++.+..+|.|.++..... .. .+..
T Consensus 141 ~I~vgD~~~sv~~~~~~~~~~~l~-~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~ 218 (321)
T PF03178_consen 141 YILVGDAMKSVSLLRYDEENNKLI-LVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERI 218 (321)
T ss_dssp EEEEEESSSSEEEEEEETTTE-EE-EEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEE
T ss_pred EEEEEEcccCEEEEEEEccCCEEE-EEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeE
Confidence 999999999999886654222111 011112345688899987775 8999999999999977531 11 1221
Q ss_pred E-ecCCCCeEEE---EEeC--CCC-----cEEEEEeCCCCEEE
Q 018322 316 F-KAHNADVNVI---SWNR--LAS-----CLLASGSDDGTFSI 347 (358)
Q Consensus 316 ~-~~h~~~V~~i---~~~p--~~~-----~~lasgs~Dg~i~i 347 (358)
. ...+..|+++ ++.| .+. ..++-++.+|.|.+
T Consensus 219 ~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 219 SSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 1 2234567887 5455 221 24777778898874
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00023 Score=41.79 Aligned_cols=37 Identities=35% Similarity=0.527 Sum_probs=33.0
Q ss_pred eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 312 ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 312 ~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
++..+..|...|++++|++.+ .++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 456677889999999999988 8999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=62.64 Aligned_cols=138 Identities=20% Similarity=0.284 Sum_probs=88.3
Q ss_pred eEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEE
Q 018322 169 NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (358)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 248 (358)
+-++|+|.| .+|+|--..| |.+|--.. ...+..| .|. .|.-++|||... +|+|=
T Consensus 214 tyv~wSP~G-TYL~t~Hk~G-I~lWGG~~---------------------f~r~~RF-~Hp-~Vq~idfSP~Ek-YLVT~ 267 (698)
T KOG2314|consen 214 TYVRWSPKG-TYLVTFHKQG-IALWGGES---------------------FDRIQRF-YHP-GVQFIDFSPNEK-YLVTY 267 (698)
T ss_pred eeEEecCCc-eEEEEEeccc-eeeecCcc---------------------HHHHHhc-cCC-CceeeecCCccc-eEEEe
Confidence 558999999 7888866655 77886544 2333334 344 577789999987 88875
Q ss_pred eC-----------CCcEEEEecCCCCCcccCCCcccc---CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE
Q 018322 249 DC-----------NSCIYLWEPASDATWNVDPNPFIG---HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 249 s~-----------dg~I~lwd~~~~~~~~~~~~~~~~---h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
+. ...|+|||++++.. . +.|.. ....-.=+.||.++. +||.-.. .+|.||+..+- .++-
T Consensus 268 s~~p~~~~~~d~e~~~l~IWDI~tG~l-k---rsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf-~lld 340 (698)
T KOG2314|consen 268 SPEPIIVEEDDNEGQQLIIWDIATGLL-K---RSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSF-MLLD 340 (698)
T ss_pred cCCccccCcccCCCceEEEEEccccch-h---cceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecCce-eeec
Confidence 42 25899999998533 2 33332 111223368999998 6665544 78999988651 1221
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEe
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs 340 (358)
.-.-.-..|...+|+|.+ .+||--.
T Consensus 341 ~Kslki~gIr~FswsP~~-~llAYwt 365 (698)
T KOG2314|consen 341 KKSLKISGIRDFSWSPTS-NLLAYWT 365 (698)
T ss_pred ccccCCccccCcccCCCc-ceEEEEc
Confidence 112233567888999987 7776543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0095 Score=52.70 Aligned_cols=151 Identities=17% Similarity=0.111 Sum_probs=95.2
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC-CCCCCeEEEE
Q 018322 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN-PITTGRLVTG 248 (358)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~~l~sg 248 (358)
++.|.+....++.+-...+.|+.|+.... ....+.... ..++.+. ++ +.|+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----------------------~~~~~~~~~--~~G~~~~~~~--g~l~v~ 57 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----------------------EVEVIDLPG--PNGMAFDRPD--GRLYVA 57 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----------------------EEEEEESSS--EEEEEEECTT--SEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----------------------eEEEEecCC--CceEEEEccC--CEEEEE
Confidence 46788844478888778899999998762 222222222 5667777 44 367777
Q ss_pred eCCCcEEEEecCCCCCcccCCCcc-cc-CCCcEEEEEECCCCCCEEEEEECC--------CcEEEEECCCCCCeeEEEec
Q 018322 249 DCNSCIYLWEPASDATWNVDPNPF-IG-HSASVEDLQWSPTEPDVFASCSVD--------GHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~~~~~-~~-h~~~V~~v~~sp~~~~~las~s~D--------g~I~iwD~r~~~~~~~~~~~ 318 (358)
... .+.++|+.++ ......... .. .....+++++.|+|. ++++.... |.|..++.. + .+..+..
T Consensus 58 ~~~-~~~~~d~~~g-~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~--~~~~~~~ 131 (246)
T PF08450_consen 58 DSG-GIAVVDPDTG-KVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-G--KVTVVAD 131 (246)
T ss_dssp ETT-CEEEEETTTT-EEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-S--EEEEEEE
T ss_pred EcC-ceEEEecCCC-cEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-C--eEEEEec
Confidence 754 4566688663 322111111 12 346789999999998 77776654 457777766 2 2333333
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.-...|.|+|+|++..++++-+..+.|..+++..
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA 165 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred CcccccceEECCcchheeecccccceeEEEeccc
Confidence 3456799999999955566777788899988854
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00068 Score=66.07 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=85.4
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
.+.--++...+. +++.|+.-|.+++|+-.. +... ..+..+..+.+..++.|+... ++|.|+..|.|.++-+....
T Consensus 35 ~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~-~~~~--~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 35 RVKLTCVDATEE-YLAMGSSAGSVYLYNRHT-GEMR--KLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred eEEEEEeecCCc-eEEEecccceEEEEecCc-hhhh--cccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccC
Confidence 344344455566 999999999999998654 3322 233444556677778888887 99999999999999887633
Q ss_pred CeeEE----E-ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 311 SALTS----F-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 311 ~~~~~----~-~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+-.. . ..|...|++++|++++ ..+++|...|+|.+--|..
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence 22111 1 3478899999999999 9999999999998877765
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00037 Score=67.09 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=72.1
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEE-EEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVE-DLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
..+.-+.|+|.-. ++|.+.++|.|.+..++.... ..+.-|...++ +++|.|+|. ++|.|-.||+|+|.|+.+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~qRl-----wtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLNWQRL-----WTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEecccee-----EeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccC
Confidence 4678899999998 999999999999988864222 33444555566 999999998 999999999999999998
Q ss_pred CCCeeEEEecCCCCeEEEEEeC
Q 018322 309 GKSALTSFKAHNADVNVISWNR 330 (358)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~~p 330 (358)
+.........-..+|.++-|.+
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCceeccccccccchheeeccc
Confidence 6432222233456788888864
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0018 Score=63.98 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=86.0
Q ss_pred EEEecCCCceeEEEEcCCC-----------CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC
Q 018322 159 LRKVAHQGCVNRIRAMTQN-----------PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~-----------~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (358)
.....|+..|+.|+|.|.. .-+||++...|.|.|||+.. ...+..+..
T Consensus 49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~---------------------~s~~~~l~~ 107 (1062)
T KOG1912|consen 49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVL---------------------ASVINWLSH 107 (1062)
T ss_pred hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehh---------------------hhhhhhhcC
Confidence 3445688999999998753 24788888999999999987 344556777
Q ss_pred CCCCeEEEEeCCCC---CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEE
Q 018322 228 HKDEGYAIDWNPIT---TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (358)
Q Consensus 228 h~~~v~~l~~s~~~---~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (358)
|.+++..++|-+.. ...|++-....+|.+|+..+++.. ..+........|+.+.|.....|..-+..|.+.+.
T Consensus 108 ~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~----Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 108 SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF----WKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee----eccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence 88888999987643 236666666789999998886541 23333345667788888665455555555666665
Q ss_pred EC
Q 018322 305 DT 306 (358)
Q Consensus 305 D~ 306 (358)
+.
T Consensus 184 ~~ 185 (1062)
T KOG1912|consen 184 KD 185 (1062)
T ss_pred ec
Confidence 44
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.004 Score=59.60 Aligned_cols=207 Identities=15% Similarity=0.101 Sum_probs=113.8
Q ss_pred CCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCC
Q 018322 46 EGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNK 125 (358)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~ 125 (358)
..+....|..-|.......-.|+.++-.|.|+.... .|+ ++..+.. -.|+++++..-
T Consensus 172 ~~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~--------~y~---~f~~~~~-~~i~~~~l~~g----------- 228 (425)
T COG0823 172 PYELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKL--------AYV---SFELGGC-PRIYYLDLNTG----------- 228 (425)
T ss_pred CceEEEEccCCcceeEecccCcceeccccCcCCCce--------EEE---EEecCCC-ceEEEEeccCC-----------
Confidence 344555555577777777888899999999986321 222 3332211 35666665210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc
Q 018322 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAES 205 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~ 205 (358)
..+.+ .. -.+.-..-+|+|++..++.+...||...||-+....
T Consensus 229 ---------------------------~~~~i-~~---~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~------ 271 (425)
T COG0823 229 ---------------------------KRPVI-LN---FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG------ 271 (425)
T ss_pred ---------------------------cccee-ec---cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC------
Confidence 01111 22 334444568999998888888888876555444311
Q ss_pred cccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEEC
Q 018322 206 ETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS 285 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s 285 (358)
+.+..+..-.+.-..=.|+|+|..+.++.+..|.-.||-....+... ..+......-..-.|+
T Consensus 272 --------------~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~S 334 (425)
T COG0823 272 --------------KNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWS 334 (425)
T ss_pred --------------CcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCC
Confidence 11222322222223667999999556677777766666554333322 1222222222266899
Q ss_pred CCCCCEEEEEEC-CCc--EEEEECCCCCCeeEEEecCCCCeEEEEEeCCC
Q 018322 286 PTEPDVFASCSV-DGH--IAIWDTRVGKSALTSFKAHNADVNVISWNRLA 332 (358)
Q Consensus 286 p~~~~~las~s~-Dg~--I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~ 332 (358)
|++. .|+..+. +|. |.+.|+..+.. ...-.+......-+|.+++
T Consensus 335 pdG~-~i~~~~~~~g~~~i~~~~~~~~~~--~~~lt~~~~~e~ps~~~ng 381 (425)
T COG0823 335 PDGD-KIVFESSSGGQWDIDKNDLASGGK--IRILTSTYLNESPSWAPNG 381 (425)
T ss_pred CCCC-EEEEEeccCCceeeEEeccCCCCc--EEEccccccCCCCCcCCCC
Confidence 9999 6666664 344 77777766432 2222233333445666666
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0003 Score=41.30 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=33.3
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
.+...+..|...+.++.|++.+. ++++|+.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 45566778889999999999886 999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.013 Score=51.81 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=94.8
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCC--------CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 164 HQGCVNRIRAMTQNPHICASWADT--------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~d--------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.....|.+.+.|+| .+.++.... |.|..++... + +..+.........|
T Consensus 84 ~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~~----------------------~-~~~~~~~~~~pNGi 139 (246)
T PF08450_consen 84 PFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPDG----------------------K-VTVVADGLGFPNGI 139 (246)
T ss_dssp CTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS----------------------E-EEEEEEEESSEEEE
T ss_pred ccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCCC----------------------e-EEEEecCcccccce
Confidence 44688999999999 577765544 4455555542 1 11122223456799
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcc---ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF---IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (358)
+|+|++..++++-+..+.|..+++...+........+ ..-.+..-.+++..++. ++++....+.|.++|.. + ..
T Consensus 140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G-~~ 216 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-G-KL 216 (246)
T ss_dssp EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-S-CE
T ss_pred EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-c-cE
Confidence 9999998344566778899999997543311111122 11223477899999997 88888889999999988 3 45
Q ss_pred eEEEecCCCCeEEEEEe-CCCCcEEEEEe
Q 018322 313 LTSFKAHNADVNVISWN-RLASCLLASGS 340 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~-p~~~~~lasgs 340 (358)
+..+......+++++|. ++...+++|.+
T Consensus 217 ~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 217 LREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 55555444579999994 55546666643
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0045 Score=62.93 Aligned_cols=124 Identities=18% Similarity=0.210 Sum_probs=81.5
Q ss_pred CCCcEEEcCCCCC-eEEEEeCCCC------CCeEEEEeCCCcEEEEecCCCCCcccC--CCccccCCCcEEEEEECCCCC
Q 018322 219 QSPLVKFGGHKDE-GYAIDWNPIT------TGRLVTGDCNSCIYLWEPASDATWNVD--PNPFIGHSASVEDLQWSPTEP 289 (358)
Q Consensus 219 ~~~~~~~~~h~~~-v~~l~~s~~~------~~~l~sgs~dg~I~lwd~~~~~~~~~~--~~~~~~h~~~V~~v~~sp~~~ 289 (358)
++.+..+..|... |..+ .|+. ....+.|-.+..++.||+|-.+...+. ...+ .......|++-+.+|
T Consensus 514 GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~~G- 589 (794)
T PF08553_consen 514 GKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTEDG- 589 (794)
T ss_pred CcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecCCc-
Confidence 4555666666542 4444 3421 114566777889999999975532221 1111 234567888877776
Q ss_pred CEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 290 DVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 290 ~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.||.|+.+|.||+|| +.+...-..+.+-+.+|..|..+.+|..+||||- ..|.+++.
T Consensus 590 -~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 590 -YIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred -eEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 699999999999999 4444444445677899999999999955555553 46777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00058 Score=63.23 Aligned_cols=165 Identities=12% Similarity=0.028 Sum_probs=114.4
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
.-|...|+.+...-. .++.+++.||.++.|--..-. ...-+..+..|-..+.+|+-+-++
T Consensus 6 ymhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~is------------------GvEfVKhFraHL~~I~sl~~S~dg 65 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRIS------------------GVEFVKHFRAHLGVILSLAVSYDG 65 (558)
T ss_pred hcccceeeeEeeehh--heEEeeecchhhhhcCCCCcc------------------ceeehhhhHHHHHHHHhhhccccc
Confidence 347788887765554 599999999999999765410 123445567788899999999998
Q ss_pred CCeEEEEeC-CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC--CEEEEEECCCcEEEEECCCCCC-eeEEEe
Q 018322 242 TGRLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP--DVFASCSVDGHIAIWDTRVGKS-ALTSFK 317 (358)
Q Consensus 242 ~~~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~--~~las~s~Dg~I~iwD~r~~~~-~~~~~~ 317 (358)
. ++.|++. |..++++|+.+-..... ..+.--.+.+..+ .++... .+-++.-.+|.|.++|-+.... ......
T Consensus 66 ~-L~~Sv~d~Dhs~KvfDvEn~Dminm--iKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 66 W-LFRSVEDPDHSVKVFDVENFDMINM--IKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred e-eEeeccCcccceeEEEeeccchhhh--cccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 7 8888777 99999999976432211 1111112222221 233221 1333444689999999998543 334447
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
-|.++|.++.+++.+ ..++|....|.|.-|...
T Consensus 142 lH~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAE 174 (558)
T ss_pred cccCceEEEEeeccc-cceeeccccceeEeecCC
Confidence 799999999999999 888888888999999887
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0056 Score=58.60 Aligned_cols=160 Identities=11% Similarity=0.116 Sum_probs=90.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCC---CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADT---GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~d---g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
..+..-+|+|++..+....-.. ..+.++++.... ...+..+.++. ..-+|+|++.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~-------------------~~~i~~~~g~~---~~P~fspDG~ 250 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGK-------------------RPVILNFNGNN---GAPAFSPDGS 250 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCc-------------------cceeeccCCcc---CCccCCCCCC
Confidence 4555667788774433332222 348888887621 12222334443 4778999998
Q ss_pred CeEEEEeCCCcEEEE--ecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC
Q 018322 243 GRLVTGDCNSCIYLW--EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 243 ~~l~sgs~dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
.++++...||...|| |+.... . ..+..-.+.-..=.|+|+|..+..+.+..|.-.||-..........+....
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~--~---~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN--L---PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc--c---eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 566677777765555 554432 2 112221122224579999996777777777766665544333334444333
Q ss_pred CCeEEEEEeCCCCcEEEEEe-CCCC--EEEEeCCCC
Q 018322 321 ADVNVISWNRLASCLLASGS-DDGT--FSIHDLRLL 353 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs-~Dg~--i~iwDlr~~ 353 (358)
..-..-.|+|+| .+|+..+ .+|. |.+.|+.+.
T Consensus 326 ~~~~~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 326 GGNSNPVWSPDG-DKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CCCcCccCCCCC-CEEEEEeccCCceeeEEeccCCC
Confidence 333367899999 5555444 3455 666666544
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.017 Score=52.19 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=99.6
Q ss_pred EEecCCCceeEEEEcCCCCcEEEE----EeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICAS----WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat----~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.+.+| -.|++++..+++| .+..|.|-|||... ....+..+..|.-.-+.|
T Consensus 51 HFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~--------------------~~~ri~E~~s~GIGPHel 104 (305)
T PF07433_consen 51 HFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAAR--------------------GYRRIGEFPSHGIGPHEL 104 (305)
T ss_pred EEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcC--------------------CcEEEeEecCCCcChhhE
Confidence 45566 4799999655555 33458899999985 245566777777777788
Q ss_pred EeCCCCCCeEEEEeC-------CCcEE-----------EEecCCCCCcccCCCcc--ccCCCcEEEEEECCCCCCEEEEE
Q 018322 236 DWNPITTGRLVTGDC-------NSCIY-----------LWEPASDATWNVDPNPF--IGHSASVEDLQWSPTEPDVFASC 295 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~-------dg~I~-----------lwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~las~ 295 (358)
.|.|++. .|+++-- .|..+ +.|..++ ... ....+ .-|..+|..+++.+++. +++.+
T Consensus 105 ~l~pDG~-tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll-~q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~ 180 (305)
T PF07433_consen 105 LLMPDGE-TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG-ALL-EQVELPPDLHQLSIRHLAVDGDGT-VAFAM 180 (305)
T ss_pred EEcCCCC-EEEEEcCCCccCcccCceecChhhcCCceEEEecCCC-cee-eeeecCccccccceeeEEecCCCc-EEEEE
Confidence 9999997 6666521 12222 2233331 111 11223 33777899999999987 55444
Q ss_pred ECCCc-------EEEEECCCCCCeeEEE-------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 296 SVDGH-------IAIWDTRVGKSALTSF-------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 296 s~Dg~-------I~iwD~r~~~~~~~~~-------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
-..|. |.+++... .+..+ ..-..-|-+|++++++..+.+|+-.-|.+.+||..+++
T Consensus 181 Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 181 QYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred ecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 43332 33333322 11111 12345688999999994455666667899999998865
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.002 Score=62.95 Aligned_cols=141 Identities=11% Similarity=0.151 Sum_probs=92.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
..|+=-++...+ .+++.|+..|.|++|+..... .......+-.+.+..+..++... ++
T Consensus 34 ~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~--------------------~~~~~~~~~~~~~~~~~vs~~e~-lv 91 (726)
T KOG3621|consen 34 ARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGE--------------------MRKLKNEGATGITCVRSVSSVEY-LV 91 (726)
T ss_pred ceEEEEEeecCC-ceEEEecccceEEEEecCchh--------------------hhcccccCccceEEEEEecchhH-hh
Confidence 333333444444 799999999999999987621 11122223334566777888876 88
Q ss_pred EEEeCCCcEEEEecCCCCCccc-CCCcc-ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC---CCeeEEEecCC
Q 018322 246 VTGDCNSCIYLWEPASDATWNV-DPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG---KSALTSFKAHN 320 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~-~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~---~~~~~~~~~h~ 320 (358)
|.|+..|.|.++.++....... ...++ ..|+..|++++|++++. .|.+|...|.|.+--+.+. ....+.+..-.
T Consensus 92 Aagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 92 AAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 9999999999999877433211 11122 23788999999999999 8999999999998877651 01222233334
Q ss_pred CCeEEEEEe
Q 018322 321 ADVNVISWN 329 (358)
Q Consensus 321 ~~V~~i~~~ 329 (358)
+.|-.|...
T Consensus 171 s~IVQlD~~ 179 (726)
T KOG3621|consen 171 SEIVQLDYL 179 (726)
T ss_pred cceEEeecc
Confidence 556555544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.031 Score=58.10 Aligned_cols=113 Identities=14% Similarity=0.267 Sum_probs=71.5
Q ss_pred EEEEeCCCCCCeEEEE-----eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC---CCcEEEE
Q 018322 233 YAIDWNPITTGRLVTG-----DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV---DGHIAIW 304 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sg-----s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~---Dg~I~iw 304 (358)
++|.|--+|. ++|+. ..-..|++||-. +... ..-......=.+++|-|.|. ++|+-.. |+.|.+|
T Consensus 199 ~~IsWRgDg~-~fAVs~~~~~~~~RkirV~drE--g~Ln---s~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~Ivff 271 (1265)
T KOG1920|consen 199 TSISWRGDGE-YFAVSFVESETGTRKIRVYDRE--GALN---STSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFF 271 (1265)
T ss_pred ceEEEccCCc-EEEEEEEeccCCceeEEEeccc--chhh---cccCcccccccceeecCCCC-eEeeeeecCCCCcEEEE
Confidence 3699999998 88873 333799999965 2211 11111122334689999988 8877543 5678888
Q ss_pred ECCCCCC--eeEEEecCCCCeEEEEEeCCCCcEEEE---EeCCCCEEEEeCCCC
Q 018322 305 DTRVGKS--ALTSFKAHNADVNVISWNRLASCLLAS---GSDDGTFSIHDLRLL 353 (358)
Q Consensus 305 D~r~~~~--~~~~~~~h~~~V~~i~~~p~~~~~las---gs~Dg~i~iwDlr~~ 353 (358)
....... -...+......|..++||.++ .+||. ......|.+|-+.+.
T Consensus 272 ErNGL~hg~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 272 ERNGLRHGEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ecCCccccccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCe
Confidence 6543111 111223333448999999998 78877 444456999987764
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.022 Score=50.17 Aligned_cols=108 Identities=18% Similarity=0.262 Sum_probs=69.5
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCC-Ccccc-CCCcEEEEEECCCC-----CCEEEEEECCCcEEE
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP-NPFIG-HSASVEDLQWSPTE-----PDVFASCSVDGHIAI 303 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~-~~~~~-h~~~V~~v~~sp~~-----~~~las~s~Dg~I~i 303 (358)
.-.-|+|||++. +||.+...|+|+++|+.......... ..+.+ -...|..+.|-+.. ...|+.-...|.++=
T Consensus 45 QWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCc-EEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 456899999998 99999999999999996422211111 11222 23567777775432 235667777888877
Q ss_pred EECCC----CCCeeEEE---ecCCCCeEEEEEeCCCCcEEEEEe
Q 018322 304 WDTRV----GKSALTSF---KAHNADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 304 wD~r~----~~~~~~~~---~~h~~~V~~i~~~p~~~~~lasgs 340 (358)
|-+.. +-...+++ ..+...|+++.++|.. ++|+.||
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG 166 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGG 166 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEec
Confidence 76532 11223333 2346789999999998 6666665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00068 Score=67.37 Aligned_cols=108 Identities=16% Similarity=0.285 Sum_probs=80.7
Q ss_pred EEEeCCCCCCeEEEEe----CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 234 AIDWNPITTGRLVTGD----CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs----~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
-..|+|..+ +|++++ ..|.|.||-- ++.... -..+.-| +++++|+|..- +|+.|-.-|.+.+|.....
T Consensus 20 i~SWHPseP-lfAVA~fS~er~GSVtIfad-tGEPqr--~Vt~P~h---atSLCWHpe~~-vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 20 ISSWHPSEP-LFAVASFSPERGGSVTIFAD-TGEPQR--DVTYPVH---ATSLCWHPEEF-VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred ccccCCCCc-eeEEEEecCCCCceEEEEec-CCCCCc--cccccee---hhhhccChHHH-HHhhccccceeEEEecCCc
Confidence 467999988 888875 3578887743 211111 1122223 55699999887 9999999999999998773
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
..-.....|..+|..+.|+++| ..|+|+..-|.|.+|...
T Consensus 92 -e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 92 -ETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -eeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence 2333346799999999999999 999999999999999765
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.053 Score=47.92 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=92.8
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE--EcCCCCCeEEEEeC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK--FGGHKDEGYAIDWN 238 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~s 238 (358)
+.+-...+..|.|+|+...++|+....+.|..++... +.+.. +.+. ...-+|++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G----------------------~vlr~i~l~g~-~D~EgI~y~ 73 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG----------------------KVLRRIPLDGF-GDYEGITYL 73 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------------------EEEEEE-SS--SSEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC----------------------CEEEEEeCCCC-CCceeEEEE
Confidence 3445567999999998768999999999998888654 22333 3342 356788887
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCccc-------CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC--C
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNV-------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV--G 309 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~-------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~--~ 309 (358)
..+. ++++--.++.+.++++........ .......+...++.|+|+|.+..+|+ +-...-.+||.++. .
T Consensus 74 g~~~-~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 74 GNGR-YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPG 151 (248)
T ss_dssp STTE-EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-
T ss_pred CCCE-EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccC
Confidence 6664 555555689999999854322110 00111235567999999998874554 55566667776654 1
Q ss_pred CCeeEE--E------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 310 KSALTS--F------KAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 310 ~~~~~~--~------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
...+.. . ......+..++++|...++++.......|.++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence 111111 1 123456889999998767887777777777777
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0088 Score=62.00 Aligned_cols=154 Identities=18% Similarity=0.286 Sum_probs=89.8
Q ss_pred eEEEEcCCCCcEEEE-----EeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 169 NRIRAMTQNPHICAS-----WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 169 ~~i~~~p~~~~~lat-----~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
..|.|--+| .++|+ ......|++||....++.. ..+. .+.-.+++|-|.|.
T Consensus 199 ~~IsWRgDg-~~fAVs~~~~~~~~RkirV~drEg~Lns~----------------se~~------~~l~~~LsWkPsgs- 254 (1265)
T KOG1920|consen 199 TSISWRGDG-EYFAVSFVESETGTRKIRVYDREGALNST----------------SEPV------EGLQHSLSWKPSGS- 254 (1265)
T ss_pred ceEEEccCC-cEEEEEEEeccCCceeEEEecccchhhcc----------------cCcc------cccccceeecCCCC-
Confidence 458888888 67777 3334789999987533322 1221 12334899999887
Q ss_pred eEEEEe---CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEE---EECCCcEEEEECCCCCCee-EEE
Q 018322 244 RLVTGD---CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS---CSVDGHIAIWDTRVGKSAL-TSF 316 (358)
Q Consensus 244 ~l~sgs---~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las---~s~Dg~I~iwD~r~~~~~~-~~~ 316 (358)
.+++-. .++.|.++.-+. -....-..++.-....|+.++|+.++. +||. +.....|++|-+..-..-+ ..+
T Consensus 255 ~iA~iq~~~sd~~IvffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sd-iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l 332 (1265)
T KOG1920|consen 255 LIAAIQCKTSDSDIVFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSD-ILAVVTSNLENSLVQLWTTGNYHWYLKQEL 332 (1265)
T ss_pred eEeeeeecCCCCcEEEEecCC-ccccccccCCcccccchheeeecCCCC-ceeeeecccccceEEEEEecCeEEEEEEEE
Confidence 777753 456788887543 111100122333344599999999998 8877 4555569999887633211 112
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
....... +.|+|..+..|..-..+|.+.++|.
T Consensus 333 ~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 333 QFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred ecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 2222222 6677755444444435555555543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.015 Score=58.31 Aligned_cols=156 Identities=8% Similarity=-0.004 Sum_probs=96.6
Q ss_pred EcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCC
Q 018322 173 AMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNS 252 (358)
Q Consensus 173 ~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg 252 (358)
|++++ ..+|.|+.+|.|.+++-.- +.+..+..+...+...-|.-.+.++|++.+.|+
T Consensus 31 ~~s~~-~~vvigt~~G~V~~Ln~s~----------------------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~ 87 (933)
T KOG2114|consen 31 CSSST-GSVVIGTADGRVVILNSSF----------------------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDE 87 (933)
T ss_pred EcCCC-ceEEEeeccccEEEecccc----------------------eeeehheecchhhhhHhhcccCceEEEEEeecC
Confidence 35555 6899999999988877543 333455555555334445555544777776654
Q ss_pred -----cEEEEecCCCCCcc--cCC---C----ccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC---CCCCCeeEE
Q 018322 253 -----CIYLWEPASDATWN--VDP---N----PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT---RVGKSALTS 315 (358)
Q Consensus 253 -----~I~lwd~~~~~~~~--~~~---~----~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~---r~~~~~~~~ 315 (358)
.+++|++....... ... + .+.....++.+++.+.+-. .+|.|-.+|.|..+.- |.......-
T Consensus 88 ~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 88 QGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceee
Confidence 58999996531111 000 1 1222456788899988866 8999999999999842 221111222
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
......+|+.+.+..++...+.. ..-..|.+|.+...
T Consensus 167 ~~~~~~pITgL~~~~d~~s~lFv-~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDGKSVLFV-ATTEQVMLYSLSGR 203 (933)
T ss_pred eccCCCCceeeEEecCCceeEEE-EecceeEEEEecCC
Confidence 23456789999999888442222 23357888888743
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0077 Score=57.26 Aligned_cols=125 Identities=12% Similarity=0.147 Sum_probs=80.2
Q ss_pred CCCcEEEcCCCCCeEEEEeCCCCCC------eEEEEeCCCcEEEEecCCCCCcccCCCccccC----CCcEEEEEECCCC
Q 018322 219 QSPLVKFGGHKDEGYAIDWNPITTG------RLVTGDCNSCIYLWEPASDATWNVDPNPFIGH----SASVEDLQWSPTE 288 (358)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~s~~~~~------~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h----~~~V~~v~~sp~~ 288 (358)
++.+....-|.. |.-+++.|+..+ .-+.|-.+..|+-||+|-.+... +...++| .....|++-..+|
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k--l~~~q~kqy~~k~nFsc~aTT~sG 442 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK--LAVVQSKQYSTKNNFSCFATTESG 442 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce--eeeeeccccccccccceeeecCCc
Confidence 455555555554 666677776543 23445568899999998655411 1111222 2345555544444
Q ss_pred CCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 289 PDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 289 ~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
++|.||.+|.||+||- .+...-..+.+-+.+|..|..+.+|..+|+|| +..+.+.|++
T Consensus 443 --~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 443 --YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred --eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 7999999999999997 44444445677888999999999995555554 3466666654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.2 Score=46.72 Aligned_cols=111 Identities=13% Similarity=0.115 Sum_probs=70.8
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCC-C--ccc-----cCCCcEEEEEECCCCCCEEEEEE---------CCCcEE
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDP-N--PFI-----GHSASVEDLQWSPTEPDVFASCS---------VDGHIA 302 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~-~--~~~-----~h~~~V~~v~~sp~~~~~las~s---------~Dg~I~ 302 (358)
++. ++.+... |+|.+.|+.......... . .+. -....+.-++++|++..+++... ..+.|.
T Consensus 205 dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 205 SGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred CCc-EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 565 6666554 999999975432111000 0 111 12344455999999986666442 125799
Q ss_pred EEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEE-eCCCCEEEEeCCCCC
Q 018322 303 IWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASG-SDDGTFSIHDLRLLK 354 (358)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasg-s~Dg~i~iwDlr~~~ 354 (358)
++|+.+. +.+..+. -...+..|+++|++..+|++. ..++.|.++|+.+++
T Consensus 283 ViD~~t~-kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 283 VVDAKTG-KRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EEECCCC-eEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 9999884 4555543 345789999999994255544 468899999998775
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.017 Score=43.85 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=69.3
Q ss_pred eEEEEe---CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 232 GYAIDW---NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 232 v~~l~~---s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
|++|++ ..++...|++|+.|..|++|+-.. .. ..+. -+..|.+++-...+ .|+.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~---~Ei~-e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IV---AEIT-ETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EE---EEEe-cccceEEEEEcCCC--EEEEEecCCEEEEEeCcc
Confidence 444544 445556899999999999998543 11 2222 35678888766654 799999999999998643
Q ss_pred CCCeeEEEecCCCCeEEEEEe---CCCCcEEEEEeCCCCEEE
Q 018322 309 GKSALTSFKAHNADVNVISWN---RLASCLLASGSDDGTFSI 347 (358)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~~---p~~~~~lasgs~Dg~i~i 347 (358)
.+..++... .++++.+. .+|..-|++|-.+|.|-+
T Consensus 73 ---RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 ---RLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---eeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 345554333 36666554 345457999999998743
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.047 Score=41.49 Aligned_cols=102 Identities=10% Similarity=0.117 Sum_probs=67.2
Q ss_pred eeEEEEcC---CCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 168 VNRIRAMT---QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 168 V~~i~~~p---~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
|++++++. ++.+-|++||+|..|+||+=.. .+..+.. ...+.+|.-... ++
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----------------------~~~Ei~e-~~~v~~L~~~~~--~~ 55 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----------------------IVAEITE-TDKVTSLCSLGG--GR 55 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----------------------EEEEEec-ccceEEEEEcCC--CE
Confidence 55666654 4457889999999999998543 2333333 346777776655 38
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEEC---CCCCCEEEEEECCCcEE
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS---PTEPDVFASCSVDGHIA 302 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s---p~~~~~las~s~Dg~I~ 302 (358)
|+-|-.+|+|-+|+-.. ..|.. .. +..+.++++. -++..-|++|-.+|.|-
T Consensus 56 F~Y~l~NGTVGvY~~~~-RlWRi-----KS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 56 FAYALANGTVGVYDRSQ-RLWRI-----KS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEecCCEEEEEeCcc-eeeee-----cc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 99999999999998644 44442 22 2235555543 34444688998888874
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.035 Score=56.69 Aligned_cols=103 Identities=15% Similarity=0.130 Sum_probs=68.3
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 018322 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (358)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~ 259 (358)
-...|-.+..+..||.+...+.+. ......+ .......|++-+.. |+||+|+.+|.|+|||-
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v---------------~~~~k~Y-~~~~~Fs~~aTt~~--G~iavgs~~G~IRLyd~ 605 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLV---------------DSQSKQY-SSKNNFSCFATTED--GYIAVGSNKGDIRLYDR 605 (794)
T ss_pred ceEEEECCCceEEeccCCCCCcee---------------ecccccc-ccCCCceEEEecCC--ceEEEEeCCCcEEeecc
Confidence 344566778899999886321110 0001111 22345667766554 58999999999999994
Q ss_pred CCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 260 ASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 260 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
. +.. ....+.+-..+|..|..+.+|..+||||- ..|.|+++
T Consensus 606 -~-g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t 646 (794)
T PF08553_consen 606 -L-GKR--AKTALPGLGDPIIGIDVTADGKWILATCK--TYLLLIDT 646 (794)
T ss_pred -c-chh--hhhcCCCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence 3 221 23556777899999999999997777765 56777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.027 Score=53.40 Aligned_cols=176 Identities=15% Similarity=0.118 Sum_probs=91.1
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC---
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP--- 239 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--- 239 (358)
...|.|++++.+.-| ++|.|..+|.+.|.|++...--+...- .....-......+++|.|+-
T Consensus 84 ~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i-------------~~~~~~~~~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 84 AKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENI-------------RESFLSKSSSSYVTSIEFSVMTL 148 (395)
T ss_dssp --S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEG-------------GG--T-SS----EEEEEEEEEE-
T ss_pred ccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccc-------------cccccccccccCeeEEEEEEEec
Confidence 347999999999887 999999999999999976322111000 00000011223577788762
Q ss_pred CCCC----eEEEEeCCCcEEEEecC--CCCCcccCCCcc-ccCCCcEEEEE-ECCC-CC------------------CEE
Q 018322 240 ITTG----RLVTGDCNSCIYLWEPA--SDATWNVDPNPF-IGHSASVEDLQ-WSPT-EP------------------DVF 292 (358)
Q Consensus 240 ~~~~----~l~sgs~dg~I~lwd~~--~~~~~~~~~~~~-~~h~~~V~~v~-~sp~-~~------------------~~l 292 (358)
.+.+ +|++|...|.+.+|.+. ..+.+.+..... ..+.+.|..|. ++.+ +. .-+
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred CCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 2222 78999999999999875 223333211111 23455555554 2211 10 123
Q ss_pred EEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEe-----CCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 293 ASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN-----RLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 293 as~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~-----p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+.......||++.....+ ..+......-....+.+- ..+ ..|++-..+|.|+++.+-.++.
T Consensus 229 vVvvSe~~irv~~~~~~k-~~~K~~~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKSK-GAHKSFDDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EEEE-SSEEEEE-TT----EEEEE-SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--E
T ss_pred EEEEcccceEEEeCCCCc-ccceeeccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCchH
Confidence 444447889999887743 333332222223344442 234 7788888999999999987653
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0038 Score=53.21 Aligned_cols=104 Identities=15% Similarity=0.208 Sum_probs=67.9
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCC--EEEEEECCCcEEEEECCCCCCeeEEEecCC-
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD--VFASCSVDGHIAIWDTRVGKSALTSFKAHN- 320 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~--~las~s~Dg~I~iwD~r~~~~~~~~~~~h~- 320 (358)
.++.|+.+|.|.+|..+..+... ..+..-...|.+. -|.++. +..+++.||.||.|.+.-. +.+-....|+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~---d~~~s~~e~i~~~--Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k~~g~~g~h~~ 145 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHS---DRVCSGEESIDLG--IPNGRDSSLGCVGAQDGRIRACNIKPN-KVLGYVGQHNF 145 (238)
T ss_pred eEEeecccceEEEecCCccchHH---Hhhhcccccceec--cccccccceeEEeccCCceeeeccccC-ceeeeeccccC
Confidence 79999999999999987433311 1111112223222 233333 8888999999999999864 3444445566
Q ss_pred CCeEEEEEeCCCCcEEEEE--eCCCCEEEEeCCCCC
Q 018322 321 ADVNVISWNRLASCLLASG--SDDGTFSIHDLRLLK 354 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasg--s~Dg~i~iwDlr~~~ 354 (358)
.++.....+..+ .+|+.+ |.|..++.|++....
T Consensus 146 ~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 146 ESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred CCcceeEEecCC-ceEEeeccccchhhhhcchhhhh
Confidence 556555566556 677777 888888999887654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.033 Score=53.92 Aligned_cols=124 Identities=11% Similarity=0.195 Sum_probs=76.2
Q ss_pred CCCCCeEEEEeCCCCCC---eEEEEeCCCcEEEEecCCC----CCcccCCCccccCCCc--EEEEEECCCCCCEEEEEEC
Q 018322 227 GHKDEGYAIDWNPITTG---RLVTGDCNSCIYLWEPASD----ATWNVDPNPFIGHSAS--VEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~---~l~sgs~dg~I~lwd~~~~----~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~las~s~ 297 (358)
|.-.-|+++.|.|-+.. .|++.-..+.|.+|.+-.. +++......-.+..-+ -..+.|||... +|+.-..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~ 132 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTA 132 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEec
Confidence 44457899999997421 4555556889999998632 2222110000000111 13467999998 7766665
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
...-.+++++.....+..=-...+.|.|.+|.++|.++++..+..=.-+|||-.
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 555556777765444432224456799999999997777666665567889854
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0026 Score=63.44 Aligned_cols=105 Identities=18% Similarity=0.284 Sum_probs=76.6
Q ss_pred EEEcCCCCcEEEEEeC----CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE--EEcCCCCCeEEEEeCCCCCCe
Q 018322 171 IRAMTQNPHICASWAD----TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV--KFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 171 i~~~p~~~~~lat~s~----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~s~~~~~~ 244 (358)
+.|+|..| ++|.++- .|.|.||-=.. .|.. +..-| +++|+|+|..- .
T Consensus 21 ~SWHPseP-lfAVA~fS~er~GSVtIfadtG----------------------EPqr~Vt~P~h---atSLCWHpe~~-v 73 (1416)
T KOG3617|consen 21 SSWHPSEP-LFAVASFSPERGGSVTIFADTG----------------------EPQRDVTYPVH---ATSLCWHPEEF-V 73 (1416)
T ss_pred cccCCCCc-eeEEEEecCCCCceEEEEecCC----------------------CCCccccccee---hhhhccChHHH-H
Confidence 46788875 6665553 46788775333 2222 12222 45799999987 8
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
|++|=.-|.+.+|...+.... .....|+.+|.-+.||++|. +++++..=|.|.+|...
T Consensus 74 La~gwe~g~~~v~~~~~~e~h----tv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 74 LAQGWEMGVSDVQKTNTTETH----TVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred HhhccccceeEEEecCCceee----eeccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 999999999999998663321 22345999999999999998 99999999999999664
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.49 Score=45.64 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=77.7
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
...-....+.++|.+ ++++. ..+|.-.|+.... ... .. .+.+..+.|.+.
T Consensus 30 ~~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~---------------------~r~--k~---~G~g~~~vw~~~-- 79 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALA---------------------WRN--KA---FGSGLSFVWSSR-- 79 (443)
T ss_dssp E-SS--SEEEE-TTS-SEEEE-EETTEEEEEETTT---------------------TEE--EE---EEE-SEEEE-TS--
T ss_pred CCCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccC---------------------Ccc--cc---cCceeEEEEecC--
Confidence 345568899999999 56666 5567777877332 111 11 134567889983
Q ss_pred CeEEEEeCCCcEEEE-ecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 243 GRLVTGDCNSCIYLW-EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 243 ~~l~sgs~dg~I~lw-d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
+.+|+-...++|.++ ++..... ..+.. ...+..|-- |. +|+..+.+ .|.+||..++ ..+.++...
T Consensus 80 n~yAv~~~~~~I~I~kn~~~~~~-----k~i~~-~~~~~~If~---G~-LL~~~~~~-~i~~yDw~~~-~~i~~i~v~-- 145 (443)
T PF04053_consen 80 NRYAVLESSSTIKIYKNFKNEVV-----KSIKL-PFSVEKIFG---GN-LLGVKSSD-FICFYDWETG-KLIRRIDVS-- 145 (443)
T ss_dssp SEEEEE-TTS-EEEEETTEE-TT-----------SS-EEEEE----SS-SEEEEETT-EEEEE-TTT---EEEEESS---
T ss_pred ccEEEEECCCeEEEEEcCccccc-----eEEcC-CcccceEEc---Cc-EEEEECCC-CEEEEEhhHc-ceeeEEecC--
Confidence 378888888999996 4432110 12211 123555533 66 66666544 8999999984 566666433
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.|..+.|++++ .++|..+.+ .+.|++.
T Consensus 146 ~vk~V~Ws~~g-~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 146 AVKYVIWSDDG-ELVALVTKD-SIYILKY 172 (443)
T ss_dssp E-EEEEE-TTS-SEEEEE-S--SEEEEEE
T ss_pred CCcEEEEECCC-CEEEEEeCC-eEEEEEe
Confidence 38999999999 788877755 6766653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.014 Score=37.18 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=29.7
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
....|.+++|+|.. .+||.|..+|.|.|+.+ +++
T Consensus 10 l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCc
Confidence 34569999999999 89999999999999998 544
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.12 Score=51.09 Aligned_cols=100 Identities=8% Similarity=0.020 Sum_probs=66.6
Q ss_pred CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-----------eeEEEecC
Q 018322 251 NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-----------ALTSFKAH 319 (358)
Q Consensus 251 dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-----------~~~~~~~h 319 (358)
++.|.+.|.++..........+..-......+.++|++.++++++..+.+|.|.|+..... .+..+..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev- 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL- 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-
Confidence 4567888876510000001122223456677999999998888888899999999987432 1222222
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
...-...+|.++| +.+.|-.-|.+|..|++.+
T Consensus 374 GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 2233456899998 7888888999999999875
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.24 Score=46.79 Aligned_cols=132 Identities=15% Similarity=0.116 Sum_probs=76.9
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 018322 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (358)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~ 259 (358)
.+.+++.+|.++.||... .+.+..... ....... ..+. .++.++.+|.|+.+|.
T Consensus 243 ~vy~~~~~g~l~a~d~~t---------------------G~~~W~~~~--~~~~~p~--~~~~-~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRS---------------------GRVLWKRDA--SSYQGPA--VDDN-RLYVTDADGVVVALDR 296 (377)
T ss_pred EEEEEEcCCEEEEEECCC---------------------CcEEEeecc--CCccCce--EeCC-EEEEECCCCeEEEEEC
Confidence 555667788899999865 222222211 0111111 1233 7888888999999999
Q ss_pred CCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEE-EEEeCCCCcEEE
Q 018322 260 ASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV-ISWNRLASCLLA 337 (358)
Q Consensus 260 ~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~-i~~~p~~~~~la 337 (358)
.++.. |.. ..+.+. .+..... .+. .+++++.+|.|+++|.+++ +.+.++..+...+.. ..+. ++ .|+
T Consensus 297 ~tG~~~W~~--~~~~~~--~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG-~~~~~~~~~~~~~~~sp~~~-~~--~l~ 365 (377)
T TIGR03300 297 RSGSELWKN--DELKYR--QLTAPAV--VGG-YLVVGDFEGYLHWLSREDG-SFVARLKTDGSGIASPPVVV-GD--GLL 365 (377)
T ss_pred CCCcEEEcc--ccccCC--ccccCEE--ECC-EEEEEeCCCEEEEEECCCC-CEEEEEEcCCCccccCCEEE-CC--EEE
Confidence 76432 211 111111 1111111 244 7888999999999999885 466666656544322 2333 23 477
Q ss_pred EEeCCCCEEEE
Q 018322 338 SGSDDGTFSIH 348 (358)
Q Consensus 338 sgs~Dg~i~iw 348 (358)
.++.||.|..|
T Consensus 366 v~~~dG~l~~~ 376 (377)
T TIGR03300 366 VQTRDGDLYAF 376 (377)
T ss_pred EEeCCceEEEe
Confidence 78889998775
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.66 Score=40.28 Aligned_cols=101 Identities=21% Similarity=0.160 Sum_probs=58.7
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCC----C------cE-EEEEECCCCCCEEEEEECCCc-EEEEECCC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS----A------SV-EDLQWSPTEPDVFASCSVDGH-IAIWDTRV 308 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~----~------~V-~~v~~sp~~~~~las~s~Dg~-I~iwD~r~ 308 (358)
+. .++.+..++.|..+|+.++.. . ..+.... . .+ ..+.+. ++ .+..++.++. +.+ |+.+
T Consensus 122 ~~-~~~~~~~~g~l~~~d~~tG~~-~---w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~g~~~~~-d~~t 192 (238)
T PF13360_consen 122 GD-RLYVGTSSGKLVALDPKTGKL-L---WKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSSGDGRVVAV-DLAT 192 (238)
T ss_dssp TT-EEEEEETCSEEEEEETTTTEE-E---EEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEECCTSSEEEE-ETTT
T ss_pred cC-EEEEEeccCcEEEEecCCCcE-E---EEeecCCCCCCcceeeecccccceEEE-CC--EEEEEcCCCeEEEE-ECCC
Confidence 44 788888899999999987433 1 1111111 1 11 223333 33 4555666664 566 9998
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 309 GKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+. .+.... ...+..+ ....+ ..|+.++.++.|.+||+++++.
T Consensus 193 g~-~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 193 GE-KLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp TE-EEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEEETTTTEE
T ss_pred CC-EEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCCCCE
Confidence 64 333322 2223332 34555 5666666899999999999864
|
... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.039 Score=52.36 Aligned_cols=182 Identities=10% Similarity=0.063 Sum_probs=93.8
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcccc---cccccc-------------------ccCCCCCCCCCCCcEE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNAL---AESETI-------------------VGQGAPQVSNQSPLVK 224 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~ 224 (358)
.|+.+.|++.. .-||+|...|.|.||.+....... ...... ......-.....|...
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 57889999987 578889999999999876532211 000000 0000000012345566
Q ss_pred EcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccc------cCCCcEEEEEECC---CC----CCE
Q 018322 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI------GHSASVEDLQWSP---TE----PDV 291 (358)
Q Consensus 225 ~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~------~h~~~V~~v~~sp---~~----~~~ 291 (358)
+....++|++++.|.-| ++|.|..+|.+.|.|+|.+.... ...+. .....|+++.|+. .+ .-+
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~--~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIY--NENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEE--EEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEe--eccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 66678899999998664 99999999999999997643211 11111 1345688888862 11 126
Q ss_pred EEEEECCCcEEEEECCC-C-CC-ee---EEEecCCCCeEEEE-EeCCC--------------------CcEEEEEeCCCC
Q 018322 292 FASCSVDGHIAIWDTRV-G-KS-AL---TSFKAHNADVNVIS-WNRLA--------------------SCLLASGSDDGT 344 (358)
Q Consensus 292 las~s~Dg~I~iwD~r~-~-~~-~~---~~~~~h~~~V~~i~-~~p~~--------------------~~~lasgs~Dg~ 344 (358)
++.|...|.+.+|.+-- . .. .+ .....+.+.|..|. |+.+. +.+++.+ .+..
T Consensus 158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~ 236 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESD 236 (395)
T ss_dssp EEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSE
T ss_pred EEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccc
Confidence 78888999999998752 1 11 11 11124566666554 43221 1244444 3567
Q ss_pred EEEEeCCCCC
Q 018322 345 FSIHDLRLLK 354 (358)
Q Consensus 345 i~iwDlr~~~ 354 (358)
++|+.+-+.+
T Consensus 237 irv~~~~~~k 246 (395)
T PF08596_consen 237 IRVFKPPKSK 246 (395)
T ss_dssp EEEE-TT---
T ss_pred eEEEeCCCCc
Confidence 8888876543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.33 Score=45.21 Aligned_cols=104 Identities=8% Similarity=-0.062 Sum_probs=63.8
Q ss_pred CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEE-e---------CCCcEEEE
Q 018322 188 GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG-D---------CNSCIYLW 257 (358)
Q Consensus 188 g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg-s---------~dg~I~lw 257 (358)
++|.+.|... .+.+..+..-..+- .+ .+|++. .|+++ + .+..|.+|
T Consensus 27 ~~v~ViD~~~---------------------~~v~g~i~~G~~P~-~~-~spDg~-~lyva~~~~~R~~~G~~~d~V~v~ 82 (352)
T TIGR02658 27 TQVYTIDGEA---------------------GRVLGMTDGGFLPN-PV-VASDGS-FFAHASTVYSRIARGKRTDYVEVI 82 (352)
T ss_pred ceEEEEECCC---------------------CEEEEEEEccCCCc-ee-ECCCCC-EEEEEeccccccccCCCCCEEEEE
Confidence 7899999887 34444444322222 34 899998 55555 4 47899999
Q ss_pred ecCCCCCcccCCCc---cccCCCcEEEEEECCCCCCEEEEEEC-CCcEEEEECCCCCCeeEEE
Q 018322 258 EPASDATWNVDPNP---FIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 258 d~~~~~~~~~~~~~---~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~~~~ 316 (358)
|+.+.......... ..........++++|+++.++++--. +..|.+.|+.+. +.+..+
T Consensus 83 D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~-kvv~ei 144 (352)
T TIGR02658 83 DPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK-AFVRMM 144 (352)
T ss_pred ECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC-cEEEEE
Confidence 99874332110100 00012334578999999944544434 899999999984 444444
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.042 Score=56.58 Aligned_cols=99 Identities=16% Similarity=0.263 Sum_probs=69.6
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.++.|+..|.|.+.|.+..-.+. ..-..-.++|++++|+.+|. .++.|-.+|.|.+||+..+ ..+..+..|..+.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~---~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D~~~~-k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL---HQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWDMHRA-KILKVITEHGAPV 175 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh---hcCCccCCcceeeEecCCCc-eeccccCCCcEEEEEccCC-cceeeeeecCCcc
Confidence 78999999999999886521111 11112357899999999998 9999999999999999874 4666666565554
Q ss_pred EEE---EEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 324 NVI---SWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 324 ~~i---~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
..+ .|..++ ..++++..-|. +|.+
T Consensus 176 t~vi~v~~t~~n-S~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQN-SKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCC-cEEEEccCCCc--eEEE
Confidence 443 344455 47777776675 5554
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.024 Score=36.09 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=29.1
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRS 197 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~ 197 (358)
....|.++.|+|.. .++|.++.+|.|.||.++-
T Consensus 10 l~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 10 LPSRVSCMSWCPTM-DLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCCcEEEEEECCCC-CEEEEEECCCeEEEEECCC
Confidence 34679999999999 7999999999999999854
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.29 Score=44.64 Aligned_cols=157 Identities=16% Similarity=0.217 Sum_probs=75.7
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcE-EEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHV-QVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
..-.+.++.+..++++ .++|+++. |.+ .-|+-... ...+.. ..-...+.+|.|.|+
T Consensus 141 ~~~~gs~~~~~r~~dG-~~vavs~~-G~~~~s~~~G~~-------------------~w~~~~--r~~~~riq~~gf~~~ 197 (302)
T PF14870_consen 141 SETSGSINDITRSSDG-RYVAVSSR-GNFYSSWDPGQT-------------------TWQPHN--RNSSRRIQSMGFSPD 197 (302)
T ss_dssp -S----EEEEEE-TTS--EEEEETT-SSEEEEE-TT-S-------------------S-EEEE----SSS-EEEEEE-TT
T ss_pred cCCcceeEeEEECCCC-cEEEEECc-ccEEEEecCCCc-------------------cceEEc--cCccceehhceecCC
Confidence 3445888888889988 67777544 554 46665431 122222 223468999999999
Q ss_pred CCCeEEEEeCCCcEEEEec-CCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE--e
Q 018322 241 TTGRLVTGDCNSCIYLWEP-ASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--K 317 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~-~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--~ 317 (358)
+. +.+ ....|.|+.=+. .....|.....+.....-.+.+++|.+.+. ++|+|+. |.+.. ....++.-...- .
T Consensus 198 ~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg~-G~l~~-S~DgGktW~~~~~~~ 272 (302)
T PF14870_consen 198 GN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGGS-GTLLV-STDGGKTWQKDRVGE 272 (302)
T ss_dssp S--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEEST-T-EEE-ESSTTSS-EE-GGGT
T ss_pred CC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeCC-ccEEE-eCCCCccceECcccc
Confidence 75 444 447888888772 222233321222222334589999999877 7776664 44433 333333221111 1
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEE
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIH 348 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iw 348 (358)
.-.+.++.|.|.... .-++.| .+|.|--|
T Consensus 273 ~~~~n~~~i~f~~~~-~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPD-KGFVLG-QDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETT-EEEEE--STTEEEEE
T ss_pred CCCCceEEEEEcCCC-ceEEEC-CCcEEEEe
Confidence 224457888887655 556655 67876554
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.13 Score=51.85 Aligned_cols=138 Identities=11% Similarity=0.171 Sum_probs=87.4
Q ss_pred CCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC--CC
Q 018322 164 HQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN--PI 240 (358)
Q Consensus 164 H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~~ 240 (358)
-+..||-|+...-+ ..+|+.|.+||.|.+|.+..-...+.......... ......+|.+.+... ..+|+|+++ ..
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~-~~r~~i~P~f~~~v~-~SaWGLdIh~~~~ 176 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG-FSRLKIKPFFHLRVG-ASAWGLDIHDYKK 176 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc-cccccCCCCeEeecC-CceeEEEEEecCc
Confidence 45678888776544 46899999999999998865322221110000000 000134566666543 489999998 65
Q ss_pred CCCeEEEEeCCCcEEEEecCCC-CCcccCCCccccCCCcEEEEEECCCC--CC---EEEEEECCCcEEEEEC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASD-ATWNVDPNPFIGHSASVEDLQWSPTE--PD---VFASCSVDGHIAIWDT 306 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~v~~sp~~--~~---~las~s~Dg~I~iwD~ 306 (358)
.. +||++++...|.||-+... .+.. ...-..|...|-+|+|-++. .. .+++++-.|.+.+|++
T Consensus 177 ~r-lIAVSsNs~~VTVFaf~l~~~r~~--~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 177 SR-LIAVSSNSQEVTVFAFALVDERFY--HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ce-EEEEecCCceEEEEEEeccccccc--cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 65 8999999999988876542 1111 11122356678899997755 22 6778888999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.2 Score=40.32 Aligned_cols=143 Identities=17% Similarity=0.186 Sum_probs=88.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCc-EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 166 GCVNRIRAMTQNPHICASWADTGH-VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~-V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.....+..+|..+..+|.+-.-|+ ..+||.......... ...+-..|.||. .||++|. +
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-------------~a~~gRHFyGHg------~fs~dG~-~ 64 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-------------WAPPGRHFYGHG------VFSPDGR-L 64 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-------------cCCCCCEEecCE------EEcCCCC-E
Confidence 344567788877678888888776 668888763211000 123334566663 6999998 8
Q ss_pred EEEEe-----CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-----------------CCcEE
Q 018322 245 LVTGD-----CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-----------------DGHIA 302 (358)
Q Consensus 245 l~sgs-----~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-----------------Dg~I~ 302 (358)
|++.- ..|.|-|||....-.. ...+..|.-.-..+.|.|+++++++.-+- +.++.
T Consensus 65 LytTEnd~~~g~G~IgVyd~~~~~~r---i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~ 141 (305)
T PF07433_consen 65 LYTTENDYETGRGVIGVYDAARGYRR---IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLV 141 (305)
T ss_pred EEEeccccCCCcEEEEEEECcCCcEE---EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceE
Confidence 87763 3589999999732221 35566677777788999999734433221 22344
Q ss_pred EEECCCCCCeeEE--E--ecCCCCeEEEEEeCCC
Q 018322 303 IWDTRVGKSALTS--F--KAHNADVNVISWNRLA 332 (358)
Q Consensus 303 iwD~r~~~~~~~~--~--~~h~~~V~~i~~~p~~ 332 (358)
+.|.+++. .+.. + ..|...|..+++.++|
T Consensus 142 ~ld~~sG~-ll~q~~Lp~~~~~lSiRHLa~~~~G 174 (305)
T PF07433_consen 142 YLDARSGA-LLEQVELPPDLHQLSIRHLAVDGDG 174 (305)
T ss_pred EEecCCCc-eeeeeecCccccccceeeEEecCCC
Confidence 44555532 2322 2 3366678888888888
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.27 Score=47.17 Aligned_cols=113 Identities=13% Similarity=0.161 Sum_probs=73.3
Q ss_pred eeEEEEcCCC------CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC----CCeEEEEe
Q 018322 168 VNRIRAMTQN------PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK----DEGYAIDW 237 (358)
Q Consensus 168 V~~i~~~p~~------~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~ 237 (358)
|+-+.+.|+. +..-..|-.+..|.-||.+-+.. ..+....+|. ....|++
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------------------~kl~~~q~kqy~~k~nFsc~a- 437 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------------------NKLAVVQSKQYSTKNNFSCFA- 437 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCc-------------------ceeeeeeccccccccccceee-
Confidence 7777777765 11223456777888899875321 1222222332 2333443
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
..+.|++++||.+|.|+|||- .+.. . ...+.+-..+|..|..+.+|..+|+|| +..+.|.+++
T Consensus 438 -TT~sG~IvvgS~~GdIRLYdr-i~~~-A--KTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 438 -TTESGYIVVGSLKGDIRLYDR-IGRR-A--KTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred -ecCCceEEEeecCCcEEeehh-hhhh-h--hhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 345569999999999999996 3222 1 356788889999999999998555544 5677777765
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.63 Score=42.88 Aligned_cols=148 Identities=12% Similarity=0.087 Sum_probs=88.4
Q ss_pred cEEEEEeC----------CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEE
Q 018322 179 HICASWAD----------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (358)
Q Consensus 179 ~~lat~s~----------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 248 (358)
.+|+.|+. .|.|.+|++....... ...+.+.. ....++|++|+-- + ++|+.|
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~--------------~~l~~i~~-~~~~g~V~ai~~~--~-~~lv~~ 104 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENN--------------FKLKLIHS-TEVKGPVTAICSF--N-GRLVVA 104 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-------------------EEEEEEE-EEESS-EEEEEEE--T-TEEEEE
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccc--------------eEEEEEEE-EeecCcceEhhhh--C-CEEEEe
Confidence 56666654 2889999998730000 00111111 2235688888765 3 366666
Q ss_pred eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE--ecCCCCeEEE
Q 018322 249 DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--KAHNADVNVI 326 (358)
Q Consensus 249 s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--~~h~~~V~~i 326 (358)
. .+.|++|++....... ...+......+.++... +. +++.|..-..|.++..+.....+..+ ......+.++
T Consensus 105 ~-g~~l~v~~l~~~~~l~--~~~~~~~~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~ 178 (321)
T PF03178_consen 105 V-GNKLYVYDLDNSKTLL--KKAFYDSPFYITSLSVF--KN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAA 178 (321)
T ss_dssp E-TTEEEEEEEETTSSEE--EEEEE-BSSSEEEEEEE--TT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEE
T ss_pred e-cCEEEEEEccCcccch--hhheecceEEEEEEecc--cc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEE
Confidence 5 5799999998744222 12222233466666655 44 88899988888888554422223333 3345568888
Q ss_pred EEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 327 SWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 327 ~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.|-+++ ..++.+..+|.|.++...
T Consensus 179 ~~l~d~-~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 179 EFLVDE-DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEE-SS-SEEEEEETTSEEEEEEE-
T ss_pred EEecCC-cEEEEEcCCCeEEEEEEC
Confidence 898777 589999999999998775
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.038 Score=56.87 Aligned_cols=96 Identities=15% Similarity=0.201 Sum_probs=65.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
..+|.|+..|.|..+|++.. ..+...-..-+++|++++|+.+|. +++.|-.+|.|.+||
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n--------------------L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D 158 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN--------------------LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWD 158 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc--------------------cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEE
Confidence 57888999999999998872 233222222346999999999998 999999999999999
Q ss_pred cCCCCCcccCCCccccCCCcEEE---EEECCCCCCEEEEEECCCc
Q 018322 259 PASDATWNVDPNPFIGHSASVED---LQWSPTEPDVFASCSVDGH 300 (358)
Q Consensus 259 ~~~~~~~~~~~~~~~~h~~~V~~---v~~sp~~~~~las~s~Dg~ 300 (358)
+..... . +.+..|..+++. +.|..++. .+.++...|.
T Consensus 159 ~~~~k~-l---~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs 198 (1206)
T KOG2079|consen 159 MHRAKI-L---KVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS 198 (1206)
T ss_pred ccCCcc-e---eeeeecCCccceEEEEEEeCCCc-EEEEccCCCc
Confidence 976332 2 334444444333 33333443 6777777775
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.5 Score=41.90 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=86.3
Q ss_pred eeEEEEcCCCCcEEEEEeCCCc----EEEEeCCCCccccccccccccCCCCCCCCCCCcE-EEcCCCCCeEEEEeCCCCC
Q 018322 168 VNRIRAMTQNPHICASWADTGH----VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~----V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~ 242 (358)
+..+.++|++..++.+.+..|. |+++|+.+. +.+. .+.. .....+.|.+++.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---------------------~~l~d~i~~--~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---------------------KFLPDGIEN--PKFSSVSWSDDGK 182 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---------------------EEEEEEEEE--EESEEEEECTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---------------------cCcCCcccc--cccceEEEeCCCC
Confidence 3456789999555555455554 999999872 2221 1111 1222499999988
Q ss_pred CeEEEEeCC----------CcEEEEecCCCCCcccCCCccccCC-Cc-EEEEEECCCCCCEEEEEECCCc---EEEEECC
Q 018322 243 GRLVTGDCN----------SCIYLWEPASDATWNVDPNPFIGHS-AS-VEDLQWSPTEPDVFASCSVDGH---IAIWDTR 307 (358)
Q Consensus 243 ~~l~sgs~d----------g~I~lwd~~~~~~~~~~~~~~~~h~-~~-V~~v~~sp~~~~~las~s~Dg~---I~iwD~r 307 (358)
+++.+.... ..|++|.+.+....- ...|.... .. ...+.++++++.+|+......+ +.+.|+.
T Consensus 183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d--~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED--ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred EEEEEEeCcccccccCCCCcEEEEEECCCChHhC--eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 666665333 237788875532211 12233322 22 6688999999966766665544 7788887
Q ss_pred CC---CCeeEEEecCCCCe-EEEEEeCCCCcEEEEEe---CCCCEEEEeCCCCC
Q 018322 308 VG---KSALTSFKAHNADV-NVISWNRLASCLLASGS---DDGTFSIHDLRLLK 354 (358)
Q Consensus 308 ~~---~~~~~~~~~h~~~V-~~i~~~p~~~~~lasgs---~Dg~i~iwDlr~~~ 354 (358)
.. ......+......+ ..+... .+ .+++... ..+.|.-.++.+..
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTS
T ss_pred ccCCCcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccc
Confidence 63 22333343333334 334444 34 4444332 24567667776654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.96 Score=42.89 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=100.2
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE-EEcCCCCCeEEEEeCCCCCCeE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~~l 245 (358)
.-+.+.+++.+....++...+..|.+.|... ..... ...+. ....+++++++. .+
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~---------------------~~~~~~~~vG~--~P~~~~~~~~~~-~v 130 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT---------------------NTVLGSIPVGL--GPVGLAVDPDGK-YV 130 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcc---------------------cceeeEeeecc--CCceEEECCCCC-EE
Confidence 3456778888877888877788999999554 11111 12222 566899999997 55
Q ss_pred EEEeC---CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE------E
Q 018322 246 VTGDC---NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS------F 316 (358)
Q Consensus 246 ~sgs~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~------~ 316 (358)
..+.. ++++.+.|..+..... ....+. .+ ..++++|++..++++-..++.|.+.|.... .+.. +
T Consensus 131 YV~n~~~~~~~vsvid~~t~~~~~---~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~--~v~~~~~~~~~ 203 (381)
T COG3391 131 YVANAGNGNNTVSVIDAATNKVTA---TIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN--SVVRGSVGSLV 203 (381)
T ss_pred EEEecccCCceEEEEeCCCCeEEE---EEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc--ceecccccccc
Confidence 55544 6788888876532211 222222 23 789999999866666668999999997663 2221 2
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCC--CCEEEEeCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDD--GTFSIHDLRLLK 354 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~D--g~i~iwDlr~~~ 354 (358)
.. ...-..+.++|++....++-..+ +.+...|..+..
T Consensus 204 ~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 204 GV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred cc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 11 22346689999995455555444 688888887643
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.69 Score=43.60 Aligned_cols=139 Identities=12% Similarity=0.092 Sum_probs=77.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
..+.+++.+|.|..+|..+ ++.+..+........+... .+. .++.++.+|.++.+|
T Consensus 66 ~~v~v~~~~g~v~a~d~~t---------------------G~~~W~~~~~~~~~~~p~v--~~~-~v~v~~~~g~l~ald 121 (377)
T TIGR03300 66 GKVYAADADGTVVALDAET---------------------GKRLWRVDLDERLSGGVGA--DGG-LVFVGTEKGEVIALD 121 (377)
T ss_pred CEEEEECCCCeEEEEEccC---------------------CcEeeeecCCCCcccceEE--cCC-EEEEEcCCCEEEEEE
Confidence 3666777889999999766 2333222211111111111 233 788888899999999
Q ss_pred cCCCCC-cccCCCccccCCCcEEE-EEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe-----EEEEEeCC
Q 018322 259 PASDAT-WNVDPNPFIGHSASVED-LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV-----NVISWNRL 331 (358)
Q Consensus 259 ~~~~~~-~~~~~~~~~~h~~~V~~-v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V-----~~i~~~p~ 331 (358)
..++.. |. ..+. ..+.+ ... .+. .++.++.+|.|..||.+++. .+..+......+ .+....
T Consensus 122 ~~tG~~~W~---~~~~---~~~~~~p~v--~~~-~v~v~~~~g~l~a~d~~tG~-~~W~~~~~~~~~~~~~~~sp~~~-- 189 (377)
T TIGR03300 122 AEDGKELWR---AKLS---SEVLSPPLV--ANG-LVVVRTNDGRLTALDAATGE-RLWTYSRVTPALTLRGSASPVIA-- 189 (377)
T ss_pred CCCCcEeee---eccC---ceeecCCEE--ECC-EEEEECCCCeEEEEEcCCCc-eeeEEccCCCceeecCCCCCEEE--
Confidence 877432 22 1111 11111 111 133 56667789999999998864 444443222111 011111
Q ss_pred CCcEEEEEeCCCCEEEEeCCCCC
Q 018322 332 ASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 332 ~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+ ..++.+..+|.+..+|+++++
T Consensus 190 ~-~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 190 D-GGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred C-CEEEEECCCCEEEEEEccCCC
Confidence 2 356677788889989987764
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.04 Score=47.14 Aligned_cols=104 Identities=12% Similarity=-0.031 Sum_probs=59.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE-eCCCCCCeEEEEeCCCcEEEE
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID-WNPITTGRLVTGDCNSCIYLW 257 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~s~~~~~~l~sgs~dg~I~lw 257 (358)
.-+++|+.+|.|++|+...... ..-.+..-...|-++- -...+. +..+++.+|.|+.|
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~--------------------~~d~~~s~~e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~ 129 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGA--------------------HSDRVCSGEESIDLGIPNGRDSS-LGCVGAQDGRIRAC 129 (238)
T ss_pred ceEEeecccceEEEecCCccch--------------------HHHhhhcccccceeccccccccc-eeEEeccCCceeee
Confidence 5788999999999999874211 1001111111222221 122222 78889999999999
Q ss_pred ecCCCCCcccCCCccccCC-CcEEEEEECCCCCCEEEEE--ECCCcEEEEECCC
Q 018322 258 EPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASC--SVDGHIAIWDTRV 308 (358)
Q Consensus 258 d~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~--s~Dg~I~iwD~r~ 308 (358)
++.- .+.. .....|+ .++..+..+-.+. ++++. |.|..++.|++..
T Consensus 130 n~~p-~k~~---g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 130 NIKP-NKVL---GYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccc-Ccee---eeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcchhh
Confidence 9854 2211 2233355 4555555555555 56666 6667777776654
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.1 Score=39.34 Aligned_cols=125 Identities=14% Similarity=0.053 Sum_probs=74.8
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE-EcCCCCCeEEEEeCCCCCCeEEEEeCCCc
Q 018322 175 TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-FGGHKDEGYAIDWNPITTGRLVTGDCNSC 253 (358)
Q Consensus 175 p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~~l~sgs~dg~ 253 (358)
++...++..|+..+.+.--|.... +.... .-+-.-+..++- -+. +++.|...|.
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG---------------------~~~We~ilg~RiE~sa~v---vgd-fVV~GCy~g~ 74 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSG---------------------NLIWEAILGVRIECSAIV---VGD-FVVLGCYSGG 74 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCC---------------------cEEeehhhCceeeeeeEE---ECC-EEEEEEccCc
Confidence 333467788888887777776652 21111 111111222332 354 8999999999
Q ss_pred EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeC
Q 018322 254 IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR 330 (358)
Q Consensus 254 I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p 330 (358)
+++.+.+++.+. ..+..-..-=...+..+++. ++..|+.|++.+..|.++. .++...+..++...+-+.+|
T Consensus 75 lYfl~~~tGs~~----w~f~~~~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~-~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 75 LYFLCVKTGSQI----WNFVILETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred EEEEEecchhhe----eeeeehhhhccceEEcCCCc-eEEEecCCCcEEEeccccc-ceEEecccCCceeccceecC
Confidence 999999885331 22222111111234567787 9999999999999999983 46666554444333344555
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.25 Score=48.10 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=81.2
Q ss_pred EEecCCCceeEEEEcCCC----CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC-----
Q 018322 160 RKVAHQGCVNRIRAMTQN----PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD----- 230 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----- 230 (358)
..++.-..|..+.|.|-+ |.+||. .....|.||.+...... ..+.+.....+-.
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e----------------~~K~l~sQtcEi~e~~pv 113 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTE----------------RNKLLMSQTCEIREPFPV 113 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccc----------------cccceeeeeeeccCCccc
Confidence 345666779999999864 678887 45578999998641110 1122222111111
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
--.+.-|+|... .|++-.....-.+++++..+..+. ..+ .-.+-|.|.+|.++|+.++++.+..-.-+|||-..
T Consensus 114 LpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVk--aDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 114 LPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVK--ADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEE--Eec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 123567999987 776665444445677765444331 112 34578999999999987777777777888998654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.22 E-value=1.9 Score=38.28 Aligned_cols=149 Identities=15% Similarity=0.123 Sum_probs=81.8
Q ss_pred ceeEEEEcCCCCcEEEEEeCC--CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 167 CVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.+....+++++..+.+....+ ..++++.... .....+.+ ..+..-.|++++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~----------------------~~~~~~~g--~~l~~PS~d~~g~-~ 79 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG----------------------PVRPVLTG--GSLTRPSWDPDGW-V 79 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC----------------------cceeeccC--CccccccccCCCC-E
Confidence 678889999995555554233 3455554333 22222223 2677889999975 6
Q ss_pred EEEEeCCCcEEEEe-cCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE--CCCcEEEEECCC-CCC-------ee
Q 018322 245 LVTGDCNSCIYLWE-PASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWDTRV-GKS-------AL 313 (358)
Q Consensus 245 l~sgs~dg~I~lwd-~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD~r~-~~~-------~~ 313 (358)
.+....+...+++. ...+..... ......-...|.++++||+|..+.+... .++.|.+--+.. ... +.
T Consensus 80 W~v~~~~~~~~~~~~~~~g~~~~~-~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~ 158 (253)
T PF10647_consen 80 WTVDDGSGGVRVVRDSASGTGEPV-EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR 158 (253)
T ss_pred EEEEcCCCceEEEEecCCCcceeE-EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccce
Confidence 66656566666664 222211110 0111111128999999999984433332 346666664432 111 11
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDD 342 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~D 342 (358)
.........+..+.|.+++ .+++.+...
T Consensus 159 ~~~~~~~~~v~~v~W~~~~-~L~V~~~~~ 186 (253)
T PF10647_consen 159 RVAPPLLSDVTDVAWSDDS-TLVVLGRSA 186 (253)
T ss_pred EecccccCcceeeeecCCC-EEEEEeCCC
Confidence 1122335678999999999 666555443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.072 Score=32.94 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=27.0
Q ss_pred CCeEEEEEeCCCC--cEEEEEeCCCCEEEEeCCC
Q 018322 321 ADVNVISWNRLAS--CLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 321 ~~V~~i~~~p~~~--~~lasgs~Dg~i~iwDlr~ 352 (358)
+.|.++.|+|... .+|+..-.-|.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3589999998763 5888888889999999993
|
It contains a characteristic DLL sequence motif. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.13 Score=53.38 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=70.9
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
...-+.++.|+|.-+...|.+..|+.|++..+... ...+..+ .-....+|++|+|.|.
T Consensus 154 k~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~--------------------~~~v~s~-p~t~~~Tav~WSprGK- 211 (1405)
T KOG3630|consen 154 KPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL--------------------AQNVTSF-PVTNSQTAVLWSPRGK- 211 (1405)
T ss_pred cccccccccccCCccchhhhhccccchhhhhhhhh--------------------hhhhccc-CcccceeeEEeccccc-
Confidence 44566788899987777888899999999887662 1122221 2345788999999999
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP 289 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~ 289 (358)
+++.|.+.|++.-|...-.-+..+..-++. -...|.+|+|--...
T Consensus 212 Ql~iG~nnGt~vQy~P~leik~~ip~Pp~~-e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 212 QLFIGRNNGTEVQYEPSLEIKSEIPEPPVE-ENYRVLSVTWLSTQE 256 (1405)
T ss_pred eeeEecCCCeEEEeecccceeecccCCCcC-CCcceeEEEEeccee
Confidence 999999999999887643211111111111 257899999987665
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.7 Score=41.29 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=99.6
Q ss_pred CCeEEEEEecCCC------ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC
Q 018322 154 TPILQLRKVAHQG------CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (358)
Q Consensus 154 ~~~~~~~~~~H~~------~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (358)
...+.+..+.|+. .-|.+-|...+..++|+-| |.+.=|-+.... ..-|...-..
T Consensus 5 sGalyhelihhPslfcnipesngvFfDDaNkqlfavrS--ggatgvvvkgpn------------------dDVpiSfdm~ 64 (657)
T KOG2377|consen 5 SGALYHELIHHPSLFCNIPESNGVFFDDANKQLFAVRS--GGATGVVVKGPN------------------DDVPISFDMD 64 (657)
T ss_pred CcceEEEEecCchhhccCCcccceeeccCcceEEEEec--CCeeEEEEeCCC------------------CCCCceeeec
Confidence 5566667777763 3445555555544555533 556666665421 1233333344
Q ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
..++|.++.||+++. .||+--.+.+|.+++..............+..+..|....|+.+. -+|..+..| +-+|-+-
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST--EIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe--eEEEEecCC-eEEEEEc
Confidence 567999999999998 999999999999998744332222223344455679999998764 466666444 5666555
Q ss_pred CCCCeeEEEecCCCCeEEEEEeCCC
Q 018322 308 VGKSALTSFKAHNADVNVISWNRLA 332 (358)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~~p~~ 332 (358)
.....+..++.|+..|+=-.|++..
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEcccc
Confidence 4445566667888888888898877
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.53 Score=40.89 Aligned_cols=144 Identities=14% Similarity=0.146 Sum_probs=76.0
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 018322 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (358)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~ 259 (358)
.+.+++.++.|+.||... ++.+..+... .++...- ...+ +.++.++.++.|+.+|.
T Consensus 38 ~v~~~~~~~~l~~~d~~t---------------------G~~~W~~~~~-~~~~~~~-~~~~-~~v~v~~~~~~l~~~d~ 93 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKT---------------------GKVLWRFDLP-GPISGAP-VVDG-GRVYVGTSDGSLYALDA 93 (238)
T ss_dssp EEEEEETTSEEEEEETTT---------------------SEEEEEEECS-SCGGSGE-EEET-TEEEEEETTSEEEEEET
T ss_pred EEEEEcCCCEEEEEECCC---------------------CCEEEEeecc-cccccee-eecc-cccccccceeeeEeccc
Confidence 555668999999999876 2333333321 1111111 1122 26777777889999997
Q ss_pred CCCCC-cccCCCccccCC-CcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC----------eEEEE
Q 018322 260 ASDAT-WNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD----------VNVIS 327 (358)
Q Consensus 260 ~~~~~-~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~----------V~~i~ 327 (358)
.++.. |........... .......+. +. .++.+..++.|..+|++++ ..+......... +..-.
T Consensus 94 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 94 KTGKVLWSIYLTSSPPAGVRSSSSPAVD--GD-RLYVGTSSGKLVALDPKTG-KLLWKYPVGEPRGSSPISSFSDINGSP 169 (238)
T ss_dssp TTSCEEEEEEE-SSCTCSTB--SEEEEE--TT-EEEEEETCSEEEEEETTTT-EEEEEEESSTT-SS--EEEETTEEEEE
T ss_pred CCcceeeeeccccccccccccccCceEe--cC-EEEEEeccCcEEEEecCCC-cEEEEeecCCCCCCcceeeecccccce
Confidence 77433 110000000111 111122222 44 7888888999999999986 455555443322 11222
Q ss_pred EeCCCCcEEEEEeCCCC-EEEEeCCCCC
Q 018322 328 WNRLASCLLASGSDDGT-FSIHDLRLLK 354 (358)
Q Consensus 328 ~~p~~~~~lasgs~Dg~-i~iwDlr~~~ 354 (358)
...++ .++.++.+|. +.+ |+++++
T Consensus 170 ~~~~~--~v~~~~~~g~~~~~-d~~tg~ 194 (238)
T PF13360_consen 170 VISDG--RVYVSSGDGRVVAV-DLATGE 194 (238)
T ss_dssp ECCTT--EEEEECCTSSEEEE-ETTTTE
T ss_pred EEECC--EEEEEcCCCeEEEE-ECCCCC
Confidence 22233 5555566675 555 888775
|
... |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.19 Score=52.29 Aligned_cols=176 Identities=14% Similarity=0.120 Sum_probs=101.3
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC-CeEEEEeCCCCCC-e
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAIDWNPITTG-R 244 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~-~ 244 (358)
.-+.+..+++-. ++..++..+.+.|+-....+..-...+.. .......+...+.-|.. ++..+..++++.- .
T Consensus 43 ~sn~la~sn~ys-l~Fa~~nsk~L~vfgtknlLi~~it~D~~-----n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~ 116 (1405)
T KOG3630|consen 43 SSNNLAISNSYS-LFFAASNSKSLAVFGTKNLLIDHITSDST-----NSLVDADENLTFKVEKEIPIVIFVCFHDATDSV 116 (1405)
T ss_pred hhhhhhcccccc-eEEEecCCcceeeeccccceeeccccccc-----ccccccccccceeeeccccceEEEeccCCceEE
Confidence 345566666653 44444555666666554422111111000 00001122234444543 5556666666541 2
Q ss_pred EEEEeCCCcEEEEecCCCCCccc-CCCccccC------CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 245 LVTGDCNSCIYLWEPASDATWNV-DPNPFIGH------SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~-~~~~~~~h------~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
++..+++-.|..||+++-..... ...++..| ...+.++.|+|.-...+|.+..|+.|++.-+......+..+
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~- 195 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF- 195 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-
Confidence 33334445888999976432110 01222222 23456889999988788999999999998876533333332
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.-...+++++|+|.| ..++.|-..|++.-|-.
T Consensus 196 p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 196 PVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred CcccceeeEEecccc-ceeeEecCCCeEEEeec
Confidence 344568999999999 99999999999887753
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=94.83 E-value=2.8 Score=37.45 Aligned_cols=145 Identities=13% Similarity=0.115 Sum_probs=85.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
..|+.|+++| |+++++.. ...+.... +...|..|...+.-. .|++-+ |+.+++++
T Consensus 8 ~~L~vGt~~G-l~~~~~~~--------------------~~~~~~i~--~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSD--------------------PSKPTRIL--KLSSITQLSVLPELN-LLLVLS-DGQLYVYD 62 (275)
T ss_pred CEEEEEECCC-EEEEEecC--------------------CccceeEe--ecceEEEEEEecccC-EEEEEc-CCccEEEE
Confidence 5788889998 99999832 12332222 222388999988776 666555 59999999
Q ss_pred cCCCCCcccCC-----C-----ccccCCCcEEEEE--ECCCCCCEEEEEECCCcEEEEECCCCC----CeeEEEecCCCC
Q 018322 259 PASDATWNVDP-----N-----PFIGHSASVEDLQ--WSPTEPDVFASCSVDGHIAIWDTRVGK----SALTSFKAHNAD 322 (358)
Q Consensus 259 ~~~~~~~~~~~-----~-----~~~~h~~~V~~v~--~sp~~~~~las~s~Dg~I~iwD~r~~~----~~~~~~~~h~~~ 322 (358)
+.......... . ........+..++ -...+. ..+.+.....|.+|...... .....+. -...
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~ 140 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDP 140 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEEEE-cCCC
Confidence 87632211000 0 0111223444444 112333 55556666799999877631 2233332 3467
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+..++|.. ..|+.|.. ....+.|+.+..
T Consensus 141 ~~~i~~~~---~~i~v~~~-~~f~~idl~~~~ 168 (275)
T PF00780_consen 141 PSSIAFLG---NKICVGTS-KGFYLIDLNTGS 168 (275)
T ss_pred cEEEEEeC---CEEEEEeC-CceEEEecCCCC
Confidence 89999994 45666654 457788888554
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.73 E-value=4.1 Score=38.92 Aligned_cols=226 Identities=14% Similarity=0.179 Sum_probs=115.7
Q ss_pred CceeeeChhHHHhhhcccccCcce-eEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCC
Q 018322 47 GEELQCDPTAYNSLHAFHIGWPCL-SFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNK 125 (358)
Q Consensus 47 ~~~l~~~~~~Y~~~~~~~~~wP~l-s~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~ 125 (358)
.+++.+|+..+.--+. |=.+ .+.+-||+ .+++++-...+.+.-.|+|+++..
T Consensus 107 ~~evllD~n~l~~~~~----~~~~~~~~~Spdg-----------~~la~~~s~~G~e~~~l~v~Dl~t------------ 159 (414)
T PF02897_consen 107 EEEVLLDPNELAKDGG----YVSLGGFSVSPDG-----------KRLAYSLSDGGSEWYTLRVFDLET------------ 159 (414)
T ss_dssp C-EEEEEGGGGSTTSS-----EEEEEEEETTTS-----------SEEEEEEEETTSSEEEEEEEETTT------------
T ss_pred ceEEEEcchHhhccCc----eEEeeeeeECCCC-----------CEEEEEecCCCCceEEEEEEECCC------------
Confidence 3588899877554442 3333 34444664 478888887777878888887731
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCC----------CcEEEEeC
Q 018322 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADT----------GHVQVWDL 195 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~d----------g~V~iwd~ 195 (358)
...+.-. +.... -..+.|.+++..++.+.... ..|+.|.+
T Consensus 160 ----------------------------g~~l~d~-i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~ 209 (414)
T PF02897_consen 160 ----------------------------GKFLPDG-IENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKL 209 (414)
T ss_dssp ----------------------------TEEEEEE-EEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEET
T ss_pred ----------------------------CcCcCCc-ccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEEC
Confidence 1112111 11111 12289999986666665443 23788888
Q ss_pred CCCccccccccccccCCCCCCCCCCCcEEEcCCCC-C-eEEEEeCCCCCCeEEE-EeCC---CcEEEEecCCCCCcccCC
Q 018322 196 RSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-E-GYAIDWNPITTGRLVT-GDCN---SCIYLWEPASDATWNVDP 269 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~-v~~l~~s~~~~~~l~s-gs~d---g~I~lwd~~~~~~~~~~~ 269 (358)
.... ......+..... . ...+.+++++. +|+. .... ..+++.++..........
T Consensus 210 gt~~-------------------~~d~lvfe~~~~~~~~~~~~~s~d~~-~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~ 269 (414)
T PF02897_consen 210 GTPQ-------------------SEDELVFEEPDEPFWFVSVSRSKDGR-YLFISSSSGTSESEVYLLDLDDGGSPDAKP 269 (414)
T ss_dssp TS-G-------------------GG-EEEEC-TTCTTSEEEEEE-TTSS-EEEEEEESSSSEEEEEEEECCCTTTSS-SE
T ss_pred CCCh-------------------HhCeeEEeecCCCcEEEEEEecCccc-EEEEEEEccccCCeEEEEeccccCCCcCCc
Confidence 7631 121234444333 2 56888999998 5543 3333 346777776531001111
Q ss_pred CccccCCCcEE-EEEECCCCCCEEEEEEC---CCcEEEEECCCCCC--eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCC
Q 018322 270 NPFIGHSASVE-DLQWSPTEPDVFASCSV---DGHIAIWDTRVGKS--ALTSFKAHNADVNVISWNRLASCLLASGSDDG 343 (358)
Q Consensus 270 ~~~~~h~~~V~-~v~~sp~~~~~las~s~---Dg~I~iwD~r~~~~--~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg 343 (358)
..+..+...+. .+... .+. +++.... .+.|.-.++..... ....+..|...+.-..+...+..++++.-.++
T Consensus 270 ~~l~~~~~~~~~~v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 270 KLLSPREDGVEYYVDHH-GDR-LYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp EEEEESSSS-EEEEEEE-TTE-EEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred EEEeCCCCceEEEEEcc-CCE-EEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence 23333333343 33333 333 4433322 45677777776432 12244556554333333334435777777666
Q ss_pred --CEEEEeCC
Q 018322 344 --TFSIHDLR 351 (358)
Q Consensus 344 --~i~iwDlr 351 (358)
.|+++++.
T Consensus 348 ~~~l~v~~~~ 357 (414)
T PF02897_consen 348 SSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETT
T ss_pred ccEEEEEECC
Confidence 68888887
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.8 Score=43.57 Aligned_cols=147 Identities=13% Similarity=0.089 Sum_probs=76.4
Q ss_pred ceeEEEEcCCCCcEEEEEe-----CCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 167 CVNRIRAMTQNPHICASWA-----DTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s-----~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.+....++|++..++++.. .+. .|.+++... .......+. ..+.-.|+|
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg----------------------~~~~lt~g~--~~t~PsWsp 406 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG----------------------VAVQVLEGH--SLTRPSWSL 406 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC----------------------cceeeecCC--CCCCceECC
Confidence 5667788898855555542 233 344444422 122223332 367889999
Q ss_pred CCCCeEEEEeCC------------CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE---E
Q 018322 240 ITTGRLVTGDCN------------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI---W 304 (358)
Q Consensus 240 ~~~~~l~sgs~d------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i---w 304 (358)
++. .|++.... +.+.+.++.. +. . .. .....|.++.|||+|. .+|... +|.|.+ -
T Consensus 407 DG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~-ge-~---~~--~~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 407 DAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDA-SA-V---AS--RVPGPISELQLSRDGV-RAAMII-GGKVYLAVVE 476 (591)
T ss_pred CCC-ceEEEecCcceEEEeccCCCceEEEEeccC-ch-h---hh--ccCCCcCeEEECCCCC-EEEEEE-CCEEEEEEEE
Confidence 976 66665422 2222223321 11 1 11 2346799999999998 444444 477766 3
Q ss_pred ECCCCCCee---EEEec-CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 305 DTRVGKSAL---TSFKA-HNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 305 D~r~~~~~~---~~~~~-h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
....+...+ ..+.. -...+..+.|..++ .++ .+..++...+|-
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~-~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGD-SLV-VGRSDPEHPVWY 523 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCC-EEE-EEecCCCCceEE
Confidence 322221111 11222 22335889999998 554 444444444443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=94.69 E-value=2.9 Score=37.02 Aligned_cols=168 Identities=13% Similarity=0.113 Sum_probs=85.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.+..-.|.+...+ .++++--.++.+.++++............ ..-.+.....+...+-+|+|.+.+. .
T Consensus 64 ~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~N~G~EGla~D~~~~-~ 131 (248)
T PF06977_consen 64 FGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTTSLDRADV----------QKISLGFPNKGNKGFEGLAYDPKTN-R 131 (248)
T ss_dssp -SSEEEEEE-STT-EEEEEETTTTEEEEEEE----TT--EEEE----------EEEE---S---SS--EEEEEETTTT-E
T ss_pred CCCceeEEEECCC-EEEEEEcCCCcEEEEEEeccccccchhhc----------eEEecccccCCCcceEEEEEcCCCC-E
Confidence 5778889998766 55555445889999998553221111000 0000001112445788999999987 6
Q ss_pred EEEEeCCCcEEEEecCC--CCCcc--cCCCc---cccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-
Q 018322 245 LVTGDCNSCIYLWEPAS--DATWN--VDPNP---FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF- 316 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~--~~~~~--~~~~~---~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~- 316 (358)
|+.+-...-..||.++. ..... ..... .......+.+++++|...++++.......|..+|. .+ .++..+
T Consensus 132 L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G-~~~~~~~ 209 (248)
T PF06977_consen 132 LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QG-RVVSSLS 209 (248)
T ss_dssp EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T---EEEEEE
T ss_pred EEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CC-CEEEEEE
Confidence 66666666677777653 11100 00001 11234568899999998878888889999999994 43 343333
Q ss_pred -ec--CC-----CCeEEEEEeCCCCcEEEEEeCCCCEEEE
Q 018322 317 -KA--HN-----ADVNVISWNRLASCLLASGSDDGTFSIH 348 (358)
Q Consensus 317 -~~--h~-----~~V~~i~~~p~~~~~lasgs~Dg~i~iw 348 (358)
.. |. ..--.|+|.++| .++++. .-+.+.+|
T Consensus 210 L~~g~~gl~~~~~QpEGIa~d~~G-~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 210 LDRGFHGLSKDIPQPEGIAFDPDG-NLYIVS-EPNLFYRF 247 (248)
T ss_dssp -STTGGG-SS---SEEEEEE-TT---EEEEE-TTTEEEEE
T ss_pred eCCcccCcccccCCccEEEECCCC-CEEEEc-CCceEEEe
Confidence 22 11 246778999998 665554 44455444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=3.3 Score=38.50 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=82.5
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEE-EeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQV-WDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
.+.++.+.+.|++ .++++ +..|.+.. ++-.. . ...++ ...-...++++.+.+.+.
T Consensus 172 ~g~~~~i~~~~~g-~~v~~-g~~G~i~~s~~~gg--~-----------------tW~~~--~~~~~~~l~~i~~~~~g~- 227 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAV-SSRGNFYSTWEPGQ--T-----------------AWTPH--QRNSSRRLQSMGFQPDGN- 227 (334)
T ss_pred cceEEEEEECCCC-eEEEE-eCCceEEEEcCCCC--C-----------------eEEEe--eCCCcccceeeeEcCCCC-
Confidence 4678888988877 45555 44565543 11111 0 01111 112335788999999886
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe---cCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK---AHN 320 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~---~h~ 320 (358)
.+++| ..|.+.+=....+..|.....+.......+.++.+.|.+. +++ ++.+|.|.. -...+. .-.... .-.
T Consensus 228 ~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~-~G~~G~v~~-S~d~G~-tW~~~~~~~~~~ 302 (334)
T PRK13684 228 LWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWA-GGGNGTLLV-SKDGGK-TWEKDPVGEEVP 302 (334)
T ss_pred EEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-EEE-EcCCCeEEE-eCCCCC-CCeECCcCCCCC
Confidence 55555 4676653223333344421111111234578899999776 554 556676653 233222 111111 122
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
...+.+.|...+ ..+++| ..|.|--|+
T Consensus 303 ~~~~~~~~~~~~-~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 303 SNFYKIVFLDPE-KGFVLG-QRGVLLRYV 329 (334)
T ss_pred cceEEEEEeCCC-ceEEEC-CCceEEEec
Confidence 357778887666 566654 668887765
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.63 E-value=2.9 Score=37.56 Aligned_cols=164 Identities=14% Similarity=0.191 Sum_probs=98.8
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE--cCCCCCeEEEEeCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GGHKDEGYAIDWNPI 240 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~s~~ 240 (358)
+-...|..+.|+|+...++++......|.=.+... +.+.++ .+- ....+|.|...
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G----------------------dlirtiPL~g~-~DpE~Ieyig~ 139 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG----------------------DLIRTIPLTGF-SDPETIEYIGG 139 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCC----------------------ceEEEeccccc-CChhHeEEecC
Confidence 45566999999999977777765554443333332 333322 221 23346777776
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCccc------CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee-
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNV------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL- 313 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~- 313 (358)
+. +.++--.++.+.++.+........ ........+...+.++|.|... .|..+-.-.-+.||.+......+
T Consensus 140 n~-fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 140 NQ-FVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred CE-EEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCcccc
Confidence 65 555656688888887765432211 1112222266789999999988 66667777777777765432111
Q ss_pred -EEEecC-------CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 314 -TSFKAH-------NADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 314 -~~~~~h-------~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.....+ -.+|..+.|++....+|+-+..++.+.-.|+.
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 111111 23577888998766777777777766666554
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.29 Score=46.29 Aligned_cols=132 Identities=14% Similarity=0.207 Sum_probs=65.1
Q ss_pred CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC--CeEEEEeC--CCCCCeEEEEeCCCcEEEEecCCCC
Q 018322 188 GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD--EGYAIDWN--PITTGRLVTGDCNSCIYLWEPASDA 263 (358)
Q Consensus 188 g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s--~~~~~~l~sgs~dg~I~lwd~~~~~ 263 (358)
.++++||+.. .++++++.--.. ...-|.|. |....-++.+.-.++|.+|--...+
T Consensus 222 ~~l~vWD~~~---------------------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g 280 (461)
T PF05694_consen 222 HSLHVWDWST---------------------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDG 280 (461)
T ss_dssp -EEEEEETTT---------------------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETT
T ss_pred CeEEEEECCC---------------------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCC
Confidence 5799999988 455555543221 23445554 4444234444456667766553444
Q ss_pred CcccCC------------------CccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC------
Q 018322 264 TWNVDP------------------NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH------ 319 (358)
Q Consensus 264 ~~~~~~------------------~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h------ 319 (358)
.|.... +.+..-..-|++|..|.+.+.+.+++-.+|.||.||+..+..+...-+..
T Consensus 281 ~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~ 360 (461)
T PF05694_consen 281 EWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIR 360 (461)
T ss_dssp EEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT
T ss_pred CeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEec
Confidence 442110 11111245689999999999888999999999999998866554432110
Q ss_pred ------------CCCeEEEEEeCCCCcEEEEEe
Q 018322 320 ------------NADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 320 ------------~~~V~~i~~~p~~~~~lasgs 340 (358)
.+..+-|+.+.+|.++.+|.|
T Consensus 361 ~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 361 KGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -B--TTS------S----EEE-TTSSEEEEE--
T ss_pred cCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 123467889999966666665
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.49 E-value=3.2 Score=39.52 Aligned_cols=121 Identities=13% Similarity=0.171 Sum_probs=62.1
Q ss_pred CeEEEEeCCCCCCeEEEEe--------------------CCCcEEEEecCCCCCcccCCCccc-c-CCCcEEEEEE--CC
Q 018322 231 EGYAIDWNPITTGRLVTGD--------------------CNSCIYLWEPASDATWNVDPNPFI-G-HSASVEDLQW--SP 286 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs--------------------~dg~I~lwd~~~~~~~~~~~~~~~-~-h~~~V~~v~~--sp 286 (358)
-.+.+.|.|..+ .++|.. ...++++||+.+. +.. +.+. + .......|.| .|
T Consensus 182 ~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r-~~~---Q~idLg~~g~~pLEvRflH~P 256 (461)
T PF05694_consen 182 FGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR-KLL---QTIDLGEEGQMPLEVRFLHDP 256 (461)
T ss_dssp ----EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT-EEE---EEEES-TTEEEEEEEEE-SST
T ss_pred CCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC-cEe---eEEecCCCCCceEEEEecCCC
Confidence 567788888765 777763 2468999999773 222 2221 1 1234556666 56
Q ss_pred CCCCEEEEEECCCcEEEEEC-CCCCC---eeEEEecC-----------------CCCeEEEEEeCCCCcEEEEEeCCCCE
Q 018322 287 TEPDVFASCSVDGHIAIWDT-RVGKS---ALTSFKAH-----------------NADVNVISWNRLASCLLASGSDDGTF 345 (358)
Q Consensus 287 ~~~~~las~s~Dg~I~iwD~-r~~~~---~~~~~~~h-----------------~~~V~~i~~~p~~~~~lasgs~Dg~i 345 (358)
....-|+.|.-.++|..|-- ..+.. .+..+..- ..-|+.|..+-+...+.+++=..|.|
T Consensus 257 ~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~Gdv 336 (461)
T PF05694_consen 257 DANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDV 336 (461)
T ss_dssp T--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEE
T ss_pred CccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcE
Confidence 66666777777777776644 22211 22333111 24579999999995666677789999
Q ss_pred EEEeCCCCCCC
Q 018322 346 SIHDLRLLKVR 356 (358)
Q Consensus 346 ~iwDlr~~~~~ 356 (358)
+.||+.....|
T Consensus 337 rqYDISDP~~P 347 (461)
T PF05694_consen 337 RQYDISDPFNP 347 (461)
T ss_dssp EEEE-SSTTS-
T ss_pred EEEecCCCCCC
Confidence 99999887654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.47 E-value=1 Score=45.17 Aligned_cols=112 Identities=14% Similarity=0.305 Sum_probs=67.8
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEEC--CCCCCEEEEEECCCcEEEEECC-
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS--PTEPDVFASCSVDGHIAIWDTR- 307 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s--p~~~~~las~s~Dg~I~iwD~r- 307 (358)
...-+.-+..+. ..++-+....+.|||.+.+. .. ....| .....|.++.|. |+++ .+++.+....|.++--.
T Consensus 31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~-lE-~~~~f-~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGV-LE-YEESF-SEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLR 105 (631)
T ss_pred CcceEeecccCc-EEEEECCCCEEEEEEcCCcE-EE-Eeeee-cCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccc
Confidence 444444455443 33333445589999997632 11 11223 456789999995 6677 77778888888888532
Q ss_pred C------C-CCeeEEE--ecCC-CCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 308 V------G-KSALTSF--KAHN-ADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 308 ~------~-~~~~~~~--~~h~-~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
. + ..++..+ ..|. .+|....|.++| .+++.+| +++.|+|-
T Consensus 106 ~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 106 YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLVVGSG--NQLFVFDK 155 (631)
T ss_pred hhhhcCCcccceeEEEEeecCCCCCccceeEecCC-eEEEEeC--CEEEEECC
Confidence 1 1 1133333 3444 579999999999 5544333 46888764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=94.43 E-value=4.9 Score=38.52 Aligned_cols=60 Identities=17% Similarity=0.059 Sum_probs=38.4
Q ss_pred ECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 284 ~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
++.+.. ..+....++.+.+.+-.... . +. ..+++..|+.+|++ .+||.-..+|.+.|...
T Consensus 186 l~~~~~-~~i~~~~g~~i~~i~~~~~~-~---i~-~~~~i~~iavSpng-~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 186 LSSDRV-VEILLANGETIYIIDENSFK-Q---ID-SDGPIIKIAVSPNG-KFIALFTDSGNLWVVSS 245 (410)
T ss_pred eecCcc-eEEEEecCCEEEEEEccccc-c---cc-CCCCeEEEEECCCC-CEEEEEECCCCEEEEEC
Confidence 444444 45555555666644433211 1 21 23579999999999 88998888999888764
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.22 E-value=5.1 Score=37.95 Aligned_cols=163 Identities=10% Similarity=0.097 Sum_probs=99.0
Q ss_pred ceeEEEEcCCCCcEEEEEe--CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 167 CVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.-..+.+.|.+..+.++-. .++++.+.|-.. .........-..+ ..+++.|++. .
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t---------------------~~~~~~~~vG~~P-~~~a~~p~g~-~ 173 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT---------------------NKVTATIPVGNTP-TGVAVDPDGN-K 173 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCC---------------------CeEEEEEecCCCc-ceEEECCCCC-e
Confidence 5667888888866666655 367777777765 2333332222233 7899999998 5
Q ss_pred EEEEe-CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC--CcEEEEECCCCCCeeEE-EecCC
Q 018322 245 LVTGD-CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD--GHIAIWDTRVGKSALTS-FKAHN 320 (358)
Q Consensus 245 l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D--g~I~iwD~r~~~~~~~~-~~~h~ 320 (358)
++.+. .++.|.+.|......+.-.......-...-..+.++|++..+.++...+ +.+...|...+. .... ...-.
T Consensus 174 vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~-v~~~~~~~~~ 252 (381)
T COG3391 174 VYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN-VTATDLPVGS 252 (381)
T ss_pred EEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce-EEEecccccc
Confidence 55554 7889999997553221000000111223345688999998666666665 689999988743 2222 11111
Q ss_pred CCeEEEEEeCCCCcEEEEE-eCCCCEEEEeCCCCC
Q 018322 321 ADVNVISWNRLASCLLASG-SDDGTFSIHDLRLLK 354 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasg-s~Dg~i~iwDlr~~~ 354 (358)
.....+..+|.+ ..+... +..+.+.+.|.++..
T Consensus 253 ~~~~~v~~~p~g-~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 253 GAPRGVAVDPAG-KAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCCCceeECCCC-CEEEEEecCCCeEEEEeCCCCc
Confidence 134567899999 555444 445788888887643
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.2 Score=31.02 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=27.3
Q ss_pred CceeEEEEcCCCC--cEEEEEeCCCcEEEEeCCC
Q 018322 166 GCVNRIRAMTQNP--HICASWADTGHVQVWDLRS 197 (358)
Q Consensus 166 ~~V~~i~~~p~~~--~~lat~s~dg~V~iwd~~~ 197 (358)
|.|.+++|+|... .+||..-..|.|.|+|++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 6789999998663 6888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=4.9 Score=38.17 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=57.6
Q ss_pred eEEEEeCCCcEEEEecCCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
.++.++.+|.+..+|..++.. |.. .... + ....+... .+. .++.++.+|.|.+.|..++ ..+.+.......
T Consensus 296 ~vy~~~~~g~l~ald~~tG~~~W~~--~~~~-~-~~~~sp~v--~~g-~l~v~~~~G~l~~ld~~tG-~~~~~~~~~~~~ 367 (394)
T PRK11138 296 RIYLVDQNDRVYALDTRGGVELWSQ--SDLL-H-RLLTAPVL--YNG-YLVVGDSEGYLHWINREDG-RFVAQQKVDSSG 367 (394)
T ss_pred EEEEEcCCCeEEEEECCCCcEEEcc--cccC-C-CcccCCEE--ECC-EEEEEeCCCEEEEEECCCC-CEEEEEEcCCCc
Confidence 777788899999999876432 221 1111 1 01111111 133 6788899999999999986 455555433333
Q ss_pred eEE-EEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 323 VNV-ISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 323 V~~-i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+.+ ..+. + ..|+.++.||.|..+++
T Consensus 368 ~~s~P~~~--~-~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 368 FLSEPVVA--D-DKLLIQARDGTVYAITR 393 (394)
T ss_pred ceeCCEEE--C-CEEEEEeCCceEEEEeC
Confidence 322 2222 3 46777889999988764
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=2 Score=42.95 Aligned_cols=95 Identities=8% Similarity=0.173 Sum_probs=51.2
Q ss_pred cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC------CcEEEEECCC-CCC-eeEEEecCCCCeE
Q 018322 253 CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD------GHIAIWDTRV-GKS-ALTSFKAHNADVN 324 (358)
Q Consensus 253 ~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D------g~I~iwD~r~-~~~-~~~~~~~h~~~V~ 324 (358)
.+..||+.+ ..|.... ++.........+.+ ++. +++.|+.+ ..+..||..+ ... .+..+........
T Consensus 433 ~ve~YDP~t-d~W~~v~-~m~~~r~~~~~~~~--~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 433 KVIRYDTVN-NIWETLP-NFWTGTIRPGVVSH--KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred eEEEECCCC-CeEeecC-CCCcccccCcEEEE--CCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 477888876 5665322 12111111111222 344 77777754 2467899886 332 2222322222233
Q ss_pred EEEEeCCCCcEEEEEeCCC--CEEEEeCCCCCC
Q 018322 325 VISWNRLASCLLASGSDDG--TFSIHDLRLLKV 355 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg--~i~iwDlr~~~~ 355 (358)
.+.+ ++ .+.++||.+| .+-.||..+.+-
T Consensus 508 ~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 508 TILH--DN-TIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred eEEE--CC-EEEEEeeecceeehhhcCcccccc
Confidence 3333 45 8999999888 788888877653
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.69 E-value=2.7 Score=43.15 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=54.4
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCC--------CcccC-------CCcc-ccCCCcEEEEEECCCC--CCE
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA--------TWNVD-------PNPF-IGHSASVEDLQWSPTE--PDV 291 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~--------~~~~~-------~~~~-~~h~~~V~~v~~sp~~--~~~ 291 (358)
-+|..|..|+.|. +||..+..|.+.+.=.+..+ ...+. ...+ ..+...|..+.|+|.+ ...
T Consensus 85 f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3789999999998 77777765544433222111 11000 0111 1345678999999985 347
Q ss_pred EEEEECCCcEEEEECCCCCCeeEE
Q 018322 292 FASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 292 las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
|+.=..|+++|+||+.....+...
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEE
Confidence 888889999999999865544433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=93.59 E-value=5.8 Score=39.69 Aligned_cols=78 Identities=8% Similarity=0.142 Sum_probs=52.7
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccC---C-Ccccc---CCCcEEEEEECCCCCCEEEEEECCCcEE
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD---P-NPFIG---HSASVEDLQWSPTEPDVFASCSVDGHIA 302 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~---~-~~~~~---h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (358)
...+.++++|++...++++..+.+|.+.|+.+...+... . ..+.+ -...-...+|.++|. .+.|..-|..|.
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~ 399 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIV 399 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeE
Confidence 467899999999945556667899999999764321100 0 00000 011223468999987 899999999999
Q ss_pred EEECCC
Q 018322 303 IWDTRV 308 (358)
Q Consensus 303 iwD~r~ 308 (358)
.|++..
T Consensus 400 kwn~~~ 405 (635)
T PRK02888 400 KWNIEA 405 (635)
T ss_pred EEehHH
Confidence 999865
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.51 Score=39.34 Aligned_cols=31 Identities=19% Similarity=0.450 Sum_probs=26.2
Q ss_pred cEEEEEECCCC-----CCEEEEEECCCcEEEEECCC
Q 018322 278 SVEDLQWSPTE-----PDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 278 ~V~~v~~sp~~-----~~~las~s~Dg~I~iwD~r~ 308 (358)
.|.+++|||.| +.+||....++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999954 45899999999999997653
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.09 Score=53.34 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=96.6
Q ss_pred ecCCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 162 VAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
.+..|.|-.++|.... +++. -.-|.+.+|++......+. ..-.+.....-...+.-+.|+|.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq--------------~~l~v~~~~p~gs~~~~V~wcp~ 191 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQ--------------PQLEVTPITPYGSDPQLVSWCPI 191 (1283)
T ss_pred hcCCCCcccccccccCChHHH---HHhhhhheeehHhhccccc--------------cceEEeecCcCCCCcceeeeccc
Confidence 4567888888885433 2222 3347789999876211110 00111112222334566778875
Q ss_pred CCC--eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEE-----------ECCCCCCEEEEEECCCcEEEEECC
Q 018322 241 TTG--RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ-----------WSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 241 ~~~--~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~-----------~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
-.+ ++..+..++.|+|..+..... ..+.+|...+.+++ .||+|. +||..+.||.++.|.+-
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeee
Confidence 322 677777888999887754222 33455766655543 689998 99999999999988764
Q ss_pred CCC----CeeEEEecCCC-CeEEEEEeCCC------C--cEEEEEeC-CCCEEEEeCCCCC
Q 018322 308 VGK----SALTSFKAHNA-DVNVISWNRLA------S--CLLASGSD-DGTFSIHDLRLLK 354 (358)
Q Consensus 308 ~~~----~~~~~~~~h~~-~V~~i~~~p~~------~--~~lasgs~-Dg~i~iwDlr~~~ 354 (358)
-.. .|++..+.|.. +-.|..|+.+. + .+++++++ +..+++|.-..++
T Consensus 266 i~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 266 ITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQ 326 (1283)
T ss_pred eeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchh
Confidence 311 24455555652 22222232211 0 24555554 5579999866554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.47 E-value=2.9 Score=39.15 Aligned_cols=104 Identities=12% Similarity=0.100 Sum_probs=60.8
Q ss_pred EEEeC-CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEE-EEECCCCCCEEEEEECCC----cEEEEECC
Q 018322 234 AIDWN-PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED-LQWSPTEPDVFASCSVDG----HIAIWDTR 307 (358)
Q Consensus 234 ~l~~s-~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~-v~~sp~~~~~las~s~Dg----~I~iwD~r 307 (358)
.+.|. +.+..+|.....+|.-+||-+...+... +.++...-.|.. +.|++.+..++.++..++ .|..-++.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~---~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKP---RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEE---EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccce---eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 44444 6666577777788877777665433322 234444455644 778888886777777633 44444555
Q ss_pred CCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC
Q 018322 308 VGKSALTSFKAHNADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~ 341 (358)
. ...+..+......-..++|+|++..++.+++.
T Consensus 316 ~-~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 316 S-GGEPKCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp E-TTEEEESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred C-CCCeEeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 1 23455554444333689999999666666664
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=93.43 E-value=5.9 Score=40.32 Aligned_cols=106 Identities=10% Similarity=0.076 Sum_probs=69.0
Q ss_pred eEEEEeCCCcEEEEecCCC------C-------CcccCCCcc--ccCCCcEEEEEEC--CCCCCEEEEEECCCcEEEEEC
Q 018322 244 RLVTGDCNSCIYLWEPASD------A-------TWNVDPNPF--IGHSASVEDLQWS--PTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~------~-------~~~~~~~~~--~~h~~~V~~v~~s--p~~~~~las~s~Dg~I~iwD~ 306 (358)
.|+.|..||.|.+|.+..- . .......++ ..-..++..++++ ...+ ++|.++....|.||-.
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lIAVSsNs~~VTVFaf 194 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LIAVSSNSQEVTVFAF 194 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EEEEecCCceEEEEEE
Confidence 7889999999999965220 0 000001111 1234678899998 6666 8999999999988865
Q ss_pred CCCCC--eeEEEecCCCCeEEEEEeCCC--Cc---EEEEEeCCCCEEEEeC
Q 018322 307 RVGKS--ALTSFKAHNADVNVISWNRLA--SC---LLASGSDDGTFSIHDL 350 (358)
Q Consensus 307 r~~~~--~~~~~~~h~~~V~~i~~~p~~--~~---~lasgs~Dg~i~iwDl 350 (358)
..... ....-..|..-|-+|+|.++. +. .|++++-.|.+.+|++
T Consensus 195 ~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 195 ALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 44211 111112356678999997754 22 7788888999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.26 E-value=12 Score=39.09 Aligned_cols=218 Identities=15% Similarity=0.186 Sum_probs=131.0
Q ss_pred eeeChhHHHhhhcccccCc-----ceeEEEEeccCCCccccCCceEEEEEeecCCC-----CCCceEEEEEeeccCCccc
Q 018322 50 LQCDPTAYNSLHAFHIGWP-----CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEK-----PSWNSIGVFKVSNISGKRR 119 (358)
Q Consensus 50 l~~~~~~Y~~~~~~~~~wP-----~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~-----~~~n~i~i~~~~~l~~~~~ 119 (358)
+++|+..+..+|.+..+-+ +.|+++.-|. ..|+++||---- +..+.|.|+.+..+
T Consensus 753 ~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~----------~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~----- 817 (1096)
T KOG1897|consen 753 RVLDQNTFEVLSSHEFERNETALSIISCKFTDDP----------NTYYVVGTGLVYPDENEPVNGRIIVFEFEEL----- 817 (1096)
T ss_pred EEecCCceeEEeeccccccceeeeeeeeeecCCC----------ceEEEEEEEeeccCCCCcccceEEEEEEecC-----
Confidence 5678888899998887744 3344455442 368999996432 34568888888410
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc
Q 018322 120 ELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHL 199 (358)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~ 199 (358)
...-......-.|.|+.+..-. | +++|. -...|+||++..
T Consensus 818 ----------------------------------~~L~~v~e~~v~Gav~aL~~fn-g-kllA~--In~~vrLye~t~-- 857 (1096)
T KOG1897|consen 818 ----------------------------------NSLELVAETVVKGAVYALVEFN-G-KLLAG--INQSVRLYEWTT-- 857 (1096)
T ss_pred ----------------------------------CceeeeeeeeeccceeehhhhC-C-eEEEe--cCcEEEEEEccc--
Confidence 1111123333468888876554 3 46664 345899999987
Q ss_pred cccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCC-CcccCCCccccCCCc
Q 018322 200 NALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA-TWNVDPNPFIGHSAS 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~-~~~~~~~~~~~h~~~ 278 (358)
.+.+..-..|..++.+|...-.+. .+++|+-=+.|.+...+... .... ..-..+...
T Consensus 858 -------------------~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~f~e--vArD~~p~W 915 (1096)
T KOG1897|consen 858 -------------------ERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGNFEE--VARDYNPNW 915 (1096)
T ss_pred -------------------cceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCceEE--eehhhCccc
Confidence 344455556778899999998888 99999988888887665422 2221 111224556
Q ss_pred EEEEEECCCCCCEEEEEECCCcEEEEECCCCC------C---eeEEE--------ecCCCCeEEE--EEeCCCCcEEEEE
Q 018322 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK------S---ALTSF--------KAHNADVNVI--SWNRLASCLLASG 339 (358)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~------~---~~~~~--------~~h~~~V~~i--~~~p~~~~~lasg 339 (358)
.+++.+-... .++-+..+|.+.+.-..+.. . .+..+ ..|..-|+++ .-.|.+ .-++-|
T Consensus 916 mtaveil~~d--~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~-~~vlfg 992 (1096)
T KOG1897|consen 916 MTAVEILDDD--TYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLE-PKVLFG 992 (1096)
T ss_pred eeeEEEecCc--eEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCC-CcEEEE
Confidence 6666654433 56666777777766443210 0 11111 2344444441 234445 346677
Q ss_pred eCCCCEEE
Q 018322 340 SDDGTFSI 347 (358)
Q Consensus 340 s~Dg~i~i 347 (358)
..+|.|-+
T Consensus 993 Tv~GsIG~ 1000 (1096)
T KOG1897|consen 993 TVNGSIGI 1000 (1096)
T ss_pred EccceEEE
Confidence 77887765
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.06 E-value=6.5 Score=35.41 Aligned_cols=165 Identities=13% Similarity=0.051 Sum_probs=101.1
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
+.++.-.+-++.++++.+- +..+..+.-++|+|+... .+|...-.-.. ..++-.|.
T Consensus 80 ~~~i~~~~l~~Dv~vse~y---vyvad~ssGL~IvDIS~P--------------------~sP~~~~~lnt-~gyaygv~ 135 (370)
T COG5276 80 LSVINARDLFADVRVSEEY---VYVADWSSGLRIVDISTP--------------------DSPTLIGFLNT-DGYAYGVY 135 (370)
T ss_pred EEEEehhhhhheeEecccE---EEEEcCCCceEEEeccCC--------------------CCcceeccccC-CceEEEEE
Confidence 4455567788888888754 333455567999999883 34433211112 25566666
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
-.|+ ++..+..+--..+.|+.++..+.. ...+......-++++.| |+ .-..+..|+-+.|-|+..+..|+..-..
T Consensus 136 vsGn-~aYVadlddgfLivdvsdpssP~l-agrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~ 210 (370)
T COG5276 136 VSGN-YAYVADLDDGFLIVDVSDPSSPQL-AGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSY 210 (370)
T ss_pred ecCC-EEEEeeccCcEEEEECCCCCCcee-eeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEE
Confidence 6776 888888666677889987655332 22333334444667766 44 4445567888999999887666544332
Q ss_pred C-CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 319 H-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 319 h-~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
. ...+.++..+++. -+++.. +.-+.+-|....+.
T Consensus 211 n~g~g~~sv~vsdnr-~y~vvy--~egvlivd~s~~ss 245 (370)
T COG5276 211 NTGPGTYSVSVSDNR-AYLVVY--DEGVLIVDVSGPSS 245 (370)
T ss_pred ecCCceEEEEecCCe-eEEEEc--ccceEEEecCCCCC
Confidence 2 3367888888765 444433 33456666665553
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.75 E-value=2.3 Score=42.67 Aligned_cols=118 Identities=14% Similarity=0.269 Sum_probs=67.5
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC--CC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP--IT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--~~ 241 (358)
-......++-+.-+ .+.++-+...++.|||.....- .....| ...+.|.+|+|.. ++
T Consensus 28 ~i~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~l-------------------E~~~~f-~~~~~I~dLDWtst~d~ 86 (631)
T PF12234_consen 28 GISNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVL-------------------EYEESF-SEDDPIRDLDWTSTPDG 86 (631)
T ss_pred CCCCcceEeecccC-cEEEEECCCCEEEEEEcCCcEE-------------------EEeeee-cCCCceeeceeeecCCC
Confidence 33455666666655 4444444445799999987321 111223 3456899999975 45
Q ss_pred CCeEEEEeCCCcEEEEecC-----C-CCCcccCCCc--cccCC-CcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 242 TGRLVTGDCNSCIYLWEPA-----S-DATWNVDPNP--FIGHS-ASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~-----~-~~~~~~~~~~--~~~h~-~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
. .+++.+....|.++.-. + ...|.. .+. +..|+ .+|.+..|.++|. +++ |+ +..+.|+|-.
T Consensus 87 q-siLaVGf~~~v~l~~Q~R~dy~~~~p~w~~-i~~i~i~~~T~h~Igds~Wl~~G~-LvV-~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 87 Q-SILAVGFPHHVLLYTQLRYDYTNKGPSWAP-IRKIDISSHTPHPIGDSIWLKDGT-LVV-GS-GNQLFVFDKW 156 (631)
T ss_pred C-EEEEEEcCcEEEEEEccchhhhcCCcccce-eEEEEeecCCCCCccceeEecCCe-EEE-Ee-CCEEEEECCC
Confidence 5 45555557788887531 1 112221 111 23344 5799999999996 433 33 3567777643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.5 Score=42.28 Aligned_cols=129 Identities=11% Similarity=0.130 Sum_probs=62.3
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEE-eCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVW-DLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
.|.-..+.|.+.+ .+|+-...++|.|+ ++... ......+......+++ |.
T Consensus 68 ~G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~--------------------~~k~i~~~~~~~~If~------G~- 118 (443)
T PF04053_consen 68 FGSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNE--------------------VVKSIKLPFSVEKIFG------GN- 118 (443)
T ss_dssp EEE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE---------------------TT-----SS-EEEEE-------SS-
T ss_pred cCceeEEEEecCc--cEEEEECCCeEEEEEcCccc--------------------cceEEcCCcccceEEc------Cc-
Confidence 3556667888854 57777778899996 44331 0001111111123333 55
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC---------CC-ee
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG---------KS-AL 313 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~---------~~-~~ 313 (358)
+|+..+ ++.|.+||..+. ..+ +.+. -.+|..|.|++++. ++|..+. ..+.|++.... -. ..
T Consensus 119 LL~~~~-~~~i~~yDw~~~-~~i---~~i~--v~~vk~V~Ws~~g~-~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f 189 (443)
T PF04053_consen 119 LLGVKS-SDFICFYDWETG-KLI---RRID--VSAVKYVIWSDDGE-LVALVTK-DSIYILKYNLEAVAAIPEEGVEDAF 189 (443)
T ss_dssp SEEEEE-TTEEEEE-TTT---EE---EEES--S-E-EEEEE-TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGE
T ss_pred EEEEEC-CCCEEEEEhhHc-cee---eEEe--cCCCcEEEEECCCC-EEEEEeC-CeEEEEEecchhcccccccCchhce
Confidence 666665 448999999873 322 2222 23489999999998 7777764 47777765431 00 22
Q ss_pred EEEecCCCCeEEEEEeCC
Q 018322 314 TSFKAHNADVNVISWNRL 331 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~ 331 (358)
..+..-...|.+..|..+
T Consensus 190 ~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 190 ELIHEISERIKSGCWVED 207 (443)
T ss_dssp EEEEEE-S--SEEEEETT
T ss_pred EEEEEecceeEEEEEEcC
Confidence 333332556777888754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.39 E-value=7 Score=35.83 Aligned_cols=152 Identities=12% Similarity=0.029 Sum_probs=80.4
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCC
Q 018322 172 RAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCN 251 (358)
Q Consensus 172 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~d 251 (358)
.|.+....++.+--..+.|+-|+.... .. ..+... ..+.++..-..+. +|+++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g--------------------~~--~~~~~p-~~~~~~~~~d~~g-~Lv~~~-- 84 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETG--------------------KK--RVFPSP-GGFSSGALIDAGG-RLIACE-- 84 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcC--------------------ce--EEEECC-CCcccceeecCCC-eEEEEc--
Confidence 455655456666566677777777541 11 222211 2223333333332 566554
Q ss_pred CcEEEEecCCCCCcccCCCccccC-CCcEEEEEECCCCCCEEEEEE-----C-----CCcEEEEECCCCCCeeEEEecCC
Q 018322 252 SCIYLWEPASDATWNVDPNPFIGH-SASVEDLQWSPTEPDVFASCS-----V-----DGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 252 g~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~las~s-----~-----Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
..+++++...+..+........+. ....+++...|++..+|-+-+ . -|.|+.+|. . ......+..+-
T Consensus 85 ~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~-g~~~~l~~~~~ 162 (307)
T COG3386 85 HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D-GGVVRLLDDDL 162 (307)
T ss_pred cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-C-CCEEEeecCcE
Confidence 345677765433312112222222 256788999999983333333 1 133444443 2 23333344445
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
..-|.|+|+|++..++++=+..+.|.-|++.
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 5568999999995555555556788888775
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.025 Score=53.55 Aligned_cols=140 Identities=18% Similarity=0.213 Sum_probs=91.4
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeC
Q 018322 171 IRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC 250 (358)
Q Consensus 171 i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~ 250 (358)
.+|-|.+.+ ++.++.+..|..||-..+ .... ..-.+....++|...+.-.++.+-.
T Consensus 40 ~~w~~e~~n-lavaca~tiv~~YD~agq----------------------~~le-~n~tg~aldm~wDkegdvlavlAek 95 (615)
T KOG2247|consen 40 HRWRPEGHN-LAVACANTIVIYYDKAGQ----------------------VILE-LNPTGKALDMAWDKEGDVLAVLAEK 95 (615)
T ss_pred eeEecCCCc-eehhhhhhHHHhhhhhcc----------------------eecc-cCCchhHhhhhhccccchhhhhhhc
Confidence 356666644 566666677888886541 1111 1223455678888877745566777
Q ss_pred CCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEe
Q 018322 251 NSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329 (358)
Q Consensus 251 dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~ 329 (358)
.+.+.+||+.+..... ..+.+ |..+. +.|++... .++.+-..|.+.|+..+..+ .+.....|...+.+++|.
T Consensus 96 ~~piylwd~n~eytqq---LE~gg~~s~sl--l~wsKg~~-el~ig~~~gn~viynhgtsR-~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 96 TGPIYLWDVNSEYTQQ---LESGGTSSKSL--LAWSKGTP-ELVIGNNAGNIVIYNHGTSR-RIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred CCCeeechhhhhhHHH---HhccCcchHHH--HhhccCCc-cccccccccceEEEeccchh-hhhhhcccccceeEEEec
Confidence 8999999997632211 11222 33333 68999888 78888899999999998854 333344488899999999
Q ss_pred CCCCcEEEEEeCCC
Q 018322 330 RLASCLLASGSDDG 343 (358)
Q Consensus 330 p~~~~~lasgs~Dg 343 (358)
+.+ +.+.++.|.
T Consensus 169 lEd--~vil~dcd~ 180 (615)
T KOG2247|consen 169 LED--YVILCDCDN 180 (615)
T ss_pred ccc--eeeecCcHH
Confidence 977 555555443
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=92.12 E-value=8.3 Score=39.72 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=54.7
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc---ccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN---ALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
-...|..|.++|.| .++|..|..| |.|-.+..... .+......... ........+....+...|..+.|+|.
T Consensus 83 ~~f~v~~i~~n~~g-~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~C---rt~~v~~~~~~~~~~~~i~qv~WhP~ 157 (717)
T PF10168_consen 83 PLFEVHQISLNPTG-SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINC---RTVPVDERFFTSNSSLEIKQVRWHPW 157 (717)
T ss_pred CceeEEEEEECCCC-CEEEEEcCCc-EEEEEeccccCccccccCCCcceeE---EEEEechhhccCCCCceEEEEEEcCC
Confidence 44699999999999 6777777754 55555543210 01000000000 00000111111234458999999998
Q ss_pred C--CCeEEEEeCCCcEEEEecCCC
Q 018322 241 T--TGRLVTGDCNSCIYLWEPASD 262 (358)
Q Consensus 241 ~--~~~l~sgs~dg~I~lwd~~~~ 262 (358)
+ ...|+.=..|++|++||+...
T Consensus 158 s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 158 SESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCCCeEEEEecCCEEEEEecCCC
Confidence 5 238888888999999999754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.87 E-value=10 Score=34.80 Aligned_cols=116 Identities=9% Similarity=0.077 Sum_probs=67.5
Q ss_pred EEEcCCCCCeEEEEeCCCCCCeEEEEeC-CCcEEEEecCC-CCCcccC--CCccccCCCcEEEEEECCCCCCEEEEEECC
Q 018322 223 VKFGGHKDEGYAIDWNPITTGRLVTGDC-NSCIYLWEPAS-DATWNVD--PNPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (358)
Q Consensus 223 ~~~~~h~~~v~~l~~s~~~~~~l~sgs~-dg~I~lwd~~~-~~~~~~~--~~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (358)
..+..|-.--.+|+|||+++ .|..+.. .+.|+-|++.. .+..... ...+....+..-.++...++. +.+++...
T Consensus 156 ~l~~~~~~~~NGla~SpDg~-tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~~ 233 (307)
T COG3386 156 RLLDDDLTIPNGLAFSPDGK-TLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVWG 233 (307)
T ss_pred EeecCcEEecCceEECCCCC-EEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEecccC
Confidence 33444444556899999998 6666554 57888887752 1111100 001111234444566666776 66444444
Q ss_pred C-cEEEEECCCCCCeeEEEecCCCCeEEEEEe-CCCCcEEEEEeCC
Q 018322 299 G-HIAIWDTRVGKSALTSFKAHNADVNVISWN-RLASCLLASGSDD 342 (358)
Q Consensus 299 g-~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~-p~~~~~lasgs~D 342 (358)
| .|.+|+.. + ..+..+.-....+++++|- ++...+++|+...
T Consensus 234 g~~v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 234 GGRVVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred CceEEEECCC-C-cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 3 89999887 3 4666665555678888885 4444666666554
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=91.69 E-value=2.5 Score=35.15 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=26.0
Q ss_pred CeEEEEeCCCCCC-----eEEEEeCCCcEEEEecCC
Q 018322 231 EGYAIDWNPITTG-----RLVTGDCNSCIYLWEPAS 261 (358)
Q Consensus 231 ~v~~l~~s~~~~~-----~l~sgs~dg~I~lwd~~~ 261 (358)
.+.+++|||.|-+ +||+...+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 6889999997643 789999999999998754
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.54 E-value=4.3 Score=35.82 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=67.3
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
..+++.|+..+.+.--|..++...- .... ...|++-+.- -+. +++.|...|.+++.+..++. .+..+..-..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~W---e~il--g~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~tGs-~~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIW---EAIL--GVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKTGS-QIWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEe---ehhh--CceeeeeeEE-ECC-EEEEEEccCcEEEEEecchh-heeeeeehhh
Confidence 3378888888888888887743211 1111 2334333322 344 78899999999999999964 4444433322
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
-=......+++ .+|..|+.|++++..|.++.
T Consensus 95 vk~~a~~d~~~-glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 95 VKVRAQCDFDG-GLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred hccceEEcCCC-ceEEEecCCCcEEEeccccc
Confidence 11223455667 89999999999999998865
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=91.52 E-value=5.5 Score=35.45 Aligned_cols=130 Identities=18% Similarity=0.316 Sum_probs=73.8
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 018322 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (358)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~ 259 (358)
+..|| ..+...+||... .+++..+.- ..++++|+ .++. .|+..+....|+.+|.
T Consensus 103 ~qLTW-k~~~~f~yd~~t---------------------l~~~~~~~y-~~EGWGLt--~dg~-~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 103 YQLTW-KEGTGFVYDPNT---------------------LKKIGTFPY-PGEGWGLT--SDGK-RLIMSDGSSRLYFLDP 156 (264)
T ss_dssp EEEES-SSSEEEEEETTT---------------------TEEEEEEE--SSS--EEE--ECSS-CEEEE-SSSEEEEE-T
T ss_pred EEEEe-cCCeEEEEcccc---------------------ceEEEEEec-CCcceEEE--cCCC-EEEEECCccceEEECC
Confidence 33443 457889999876 345555543 35899998 4455 6666666779999998
Q ss_pred CCCCCcccCCCccccC---CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe---------------cCCC
Q 018322 260 ASDATWNVDPNPFIGH---SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK---------------AHNA 321 (358)
Q Consensus 260 ~~~~~~~~~~~~~~~h---~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~---------------~h~~ 321 (358)
.+...... ...... -..++.+-|. +|. +.|=.-....|...|..++. ....+. ....
T Consensus 157 ~~f~~~~~--i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~I~~Idp~tG~-V~~~iDls~L~~~~~~~~~~~~~~d 231 (264)
T PF05096_consen 157 ETFKEVRT--IQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDRIVRIDPETGK-VVGWIDLSGLRPEVGRDKSRQPDDD 231 (264)
T ss_dssp TT-SEEEE--EE-EETTEE---EEEEEEE-TTE-EEEEETTSSEEEEEETTT-B-EEEEEE-HHHHHHHTSTTST--TTS
T ss_pred cccceEEE--EEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCe-EEEEEEhhHhhhcccccccccccCC
Confidence 76432111 011111 1345666665 444 77777777777777888753 322220 0124
Q ss_pred CeEEEEEeCCCCcEEEEEe
Q 018322 322 DVNVISWNRLASCLLASGS 340 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs 340 (358)
-.|.|+|.|....+++||=
T Consensus 232 VLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 232 VLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp -EEEEEEETTTTEEEEEET
T ss_pred eeEeEeEeCCCCEEEEEeC
Confidence 5799999998878888873
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.22 E-value=13 Score=34.91 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=54.6
Q ss_pred EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCC----CcccCCCcccc----CCCcEEEEEECCCCCCEEEEE
Q 018322 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA----TWNVDPNPFIG----HSASVEDLQWSPTEPDVFASC 295 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~----~~~~~~~~~~~----h~~~V~~v~~sp~~~~~las~ 295 (358)
.+........+|++.+.+ +++ ++.....++.+....+ ...+....+.. +......++|.|++. +.++.
T Consensus 66 vfa~~l~~p~Gi~~~~~G--lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~ 141 (367)
T TIGR02604 66 VFAEELSMVTGLAVAVGG--VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNH 141 (367)
T ss_pred EeecCCCCccceeEecCC--EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEec
Confidence 333333456788888765 444 3434333344543221 11111111211 234577899999997 55544
Q ss_pred ECC-------------------CcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEe
Q 018322 296 SVD-------------------GHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 296 s~D-------------------g~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs 340 (358)
+.. |.|.-++...+ .+..+...-...+.++|++.+ .++++-.
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~--~~e~~a~G~rnp~Gl~~d~~G-~l~~tdn 202 (367)
T TIGR02604 142 GNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG--KLRVVAHGFQNPYGHSVDSWG-DVFFCDN 202 (367)
T ss_pred ccCCCceeccCCCccCcccccCceEEEEecCCC--eEEEEecCcCCCccceECCCC-CEEEEcc
Confidence 421 33444444432 222221112235788999988 7776644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.95 E-value=4.7 Score=38.99 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=72.8
Q ss_pred CCCcEEEcCCCCCeEEEEeCCCCCC------eEEEEeCCCcEEEEecCCCCCcccC--CCccccCCCcEEEEEECCCCCC
Q 018322 219 QSPLVKFGGHKDEGYAIDWNPITTG------RLVTGDCNSCIYLWEPASDATWNVD--PNPFIGHSASVEDLQWSPTEPD 290 (358)
Q Consensus 219 ~~~~~~~~~h~~~v~~l~~s~~~~~------~l~sgs~dg~I~lwd~~~~~~~~~~--~~~~~~h~~~V~~v~~sp~~~~ 290 (358)
++.+-...-|..- -+.+.|.... .-++|-.+..|.-.|.+..+..+.. .+.+.+ .....+..-..+|
T Consensus 500 GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t-Kn~Fss~~tTesG-- 574 (776)
T COG5167 500 GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT-KNKFSSGMTTESG-- 574 (776)
T ss_pred ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc-cccccccccccCc--
Confidence 3444445444433 4666765321 3345555777777788765532211 111111 1223333322233
Q ss_pred EEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 291 VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
++|.+|..|-||+||.-. ...-..+.+-+..|-.|....+|..+||||- ..+.+-|++
T Consensus 575 yIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 575 YIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP 632 (776)
T ss_pred eEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence 899999999999999543 2333345667778999999999966677663 467777775
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.89 E-value=3.3 Score=37.03 Aligned_cols=100 Identities=17% Similarity=0.278 Sum_probs=64.9
Q ss_pred EEEEeCCCCCCeEEEEeCCC-cEEEEecCCCCCccc----CCCccccCCCcEEEEEECCCCCCEEEEEE----CCCcEEE
Q 018322 233 YAIDWNPITTGRLVTGDCNS-CIYLWEPASDATWNV----DPNPFIGHSASVEDLQWSPTEPDVFASCS----VDGHIAI 303 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg-~I~lwd~~~~~~~~~----~~~~~~~h~~~V~~v~~sp~~~~~las~s----~Dg~I~i 303 (358)
..+.++|....-++.+-.=| ...++|......... ..+.|.+|. +|||++..+.||=. .-|.|-|
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEE
Confidence 35666666553344444434 345677765433221 124466675 79999994444432 2378999
Q ss_pred EECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEE
Q 018322 304 WDTRVGKSALTSFKAHNADVNVISWNRLASCLLASG 339 (358)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasg 339 (358)
||.|.+-+.+-.+..|.-.-..+.|.++| ++|+.+
T Consensus 145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DG-rtlvva 179 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGPHEVTLMADG-RTLVVA 179 (366)
T ss_pred EecccccceecccccCCcCcceeEEecCC-cEEEEe
Confidence 99998666777788888888999999999 666654
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.65 E-value=1.7 Score=41.31 Aligned_cols=102 Identities=12% Similarity=0.103 Sum_probs=68.8
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
-.|+|.+|+|++++ .++|.--.+.+|.++++...... .......+..+..|.+..|+...
T Consensus 65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~-----------------l~~~~~ck~k~~~IlGF~W~~s~-- 124 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQ-----------------LEYTQECKTKNANILGFCWTSST-- 124 (657)
T ss_pred CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchh-----------------hHHHHHhccCcceeEEEEEecCe--
Confidence 36799999999999 89999999999999998652110 11111222233468999999874
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP 289 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~ 289 (358)
-+|.-.. .-|-+|.+...... .+....|+..|+-..|++..+
T Consensus 125 e~A~i~~-~G~e~y~v~pekrs---lRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 125 EIAFITD-QGIEFYQVLPEKRS---LRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred eEEEEec-CCeEEEEEchhhhh---hhhhhhcccCccEEEEccccc
Confidence 4555553 34667766443222 255667888888888988876
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=90.27 E-value=11 Score=35.88 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=57.4
Q ss_pred eEEEEeCCCcEEEEecCCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC-CC
Q 018322 244 RLVTGDCNSCIYLWEPASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-NA 321 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-~~ 321 (358)
.++.++.+|.+..+|+.++.. |. ..+. ....+.. .+. .++.++.+|.+..+|..++. .+.....- ..
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~~W~---~~~~----~~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~~ 326 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQIVWK---REYG----SVNDFAV--DGG-RIYLVDQNDRVYALDTRGGV-ELWSQSDLLHR 326 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCEEEe---ecCC----CccCcEE--ECC-EEEEEcCCCeEEEEECCCCc-EEEcccccCCC
Confidence 677777889999999987432 22 1111 1111222 233 56677889999999998863 33322111 11
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
...+.... + ..|+.++.+|.|.+.|..+++
T Consensus 327 ~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 327 LLTAPVLY--N-GYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred cccCCEEE--C-CEEEEEeCCCEEEEEECCCCC
Confidence 12222222 3 467778889999999988765
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=89.97 E-value=26 Score=36.15 Aligned_cols=52 Identities=10% Similarity=-0.021 Sum_probs=36.4
Q ss_pred CCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEe
Q 018322 46 EGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKV 111 (358)
Q Consensus 46 ~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~ 111 (358)
..|++.+|+.++.--+. .|-.-.+.|-||+ .+|+++..+.+.+...|+|.++
T Consensus 109 ~~~~~llD~n~~a~~~~---~~~l~~~~~Spdg-----------~~la~~~d~~G~E~~~l~v~d~ 160 (686)
T PRK10115 109 DEWETLLDANKRAAHSE---FYTLGGMAITPDN-----------TIMALAEDFLSRRQYGIRFRNL 160 (686)
T ss_pred CCCEEEEcchhhccCCC---cEEEeEEEECCCC-----------CEEEEEecCCCcEEEEEEEEEC
Confidence 34789999988743222 1333356777775 4888888888888888988887
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=89.41 E-value=6.2 Score=39.71 Aligned_cols=105 Identities=9% Similarity=0.020 Sum_probs=56.0
Q ss_pred CCeEEEEeCCCCCCeEEEEe------CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-CcEE
Q 018322 230 DEGYAIDWNPITTGRLVTGD------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIA 302 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~ 302 (358)
..+.+.+.+|++. .++..- .|..-.||-...++... ....+ .....-.|+|++. .+++.+.. ..++
T Consensus 350 ~~vsspaiSpdG~-~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~---~lt~g--~~~t~PsWspDG~-~lw~v~dg~~~~~ 422 (591)
T PRK13616 350 GNITSAALSRSGR-QVAAVVTLGRGAPDPASSLWVGPLGGVAV---QVLEG--HSLTRPSWSLDAD-AVWVVVDGNTVVR 422 (591)
T ss_pred cCcccceECCCCC-EEEEEEeecCCCCCcceEEEEEeCCCcce---eeecC--CCCCCceECCCCC-ceEEEecCcceEE
Confidence 3567889999998 554433 24444455433222211 11222 2377789999987 55555432 2222
Q ss_pred EE-----------ECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEE
Q 018322 303 IW-----------DTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSI 347 (358)
Q Consensus 303 iw-----------D~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~i 347 (358)
+. ++..+. ... .....|..+.|+|+| ..||.-. +|+|.+
T Consensus 423 v~~~~~~gql~~~~vd~ge-~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v~V 472 (591)
T PRK13616 423 VIRDPATGQLARTPVDASA-VAS---RVPGPISELQLSRDG-VRAAMII-GGKVYL 472 (591)
T ss_pred EeccCCCceEEEEeccCch-hhh---ccCCCcCeEEECCCC-CEEEEEE-CCEEEE
Confidence 22 332211 111 234579999999999 4444433 366665
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.31 E-value=0.68 Score=47.35 Aligned_cols=88 Identities=9% Similarity=0.096 Sum_probs=55.0
Q ss_pred CCeEEEEEec-CCCceeEEEEcCCC--CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC
Q 018322 154 TPILQLRKVA-HQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD 230 (358)
Q Consensus 154 ~~~~~~~~~~-H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 230 (358)
.+.+..+.+. ....+..|.|+|-- ...+..+-.++.|++..++..... .+.+|..
T Consensus 168 q~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~----------------------l~rsHs~ 225 (1283)
T KOG1916|consen 168 QPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRS----------------------LFRSHSQ 225 (1283)
T ss_pred ccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHH----------------------HHHhcCC
Confidence 4555544333 33466778888743 256677778889998887763321 1223333
Q ss_pred CeEEEE-----------eCCCCCCeEEEEeCCCcEEEEecCCCCC
Q 018322 231 EGYAID-----------WNPITTGRLVTGDCNSCIYLWEPASDAT 264 (358)
Q Consensus 231 ~v~~l~-----------~s~~~~~~l~sgs~dg~I~lwd~~~~~~ 264 (358)
.+..++ .+|+|. .|+.++.||.++.|.+.-.++
T Consensus 226 ~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 226 RVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred CcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeecc
Confidence 322222 588998 999999999999998754343
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.14 E-value=6.6 Score=42.17 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=50.8
Q ss_pred CCCcEEEEEECCCCCCEEEEEECCCcEEEEECC----CC-------CC------------eeEEEe-cCCCCeEEEEEeC
Q 018322 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR----VG-------KS------------ALTSFK-AHNADVNVISWNR 330 (358)
Q Consensus 275 h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r----~~-------~~------------~~~~~~-~h~~~V~~i~~~p 330 (358)
....|+++....+|+ +|++|-++ .||.+- .+ +- .+..+. .+..+|..|....
T Consensus 177 dg~~V~~I~~t~nGR-IF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGR-IFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred CCceEEEEEeccCCc-EEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 356789999888888 77666554 445431 10 00 112233 5677899999987
Q ss_pred CCCcEEEEEeCCCCEEEEeCCC
Q 018322 331 LASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 331 ~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.. .++.+-+..|+|.+||+..
T Consensus 253 SR-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SR-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cc-ceeeeeccCceEEEEEccC
Confidence 66 7899999999999999976
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.91 E-value=8.1 Score=37.58 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=50.2
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCC--------CcccCC-------CccccC-CCcEEEEEECCCC--CCEE
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA--------TWNVDP-------NPFIGH-SASVEDLQWSPTE--PDVF 292 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~--------~~~~~~-------~~~~~h-~~~V~~v~~sp~~--~~~l 292 (358)
+|+.+..++.|. .++-.+.+|.+.++=.+..| +..+.. ..|... .-.+..++|+|+. ...+
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 788899999998 66666668876655432211 111111 111111 1245678999987 5578
Q ss_pred EEEECCCcEEEEECCCC
Q 018322 293 ASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 293 as~s~Dg~I~iwD~r~~ 309 (358)
..-+.|..|||||+...
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 88889999999998753
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=86.99 E-value=21 Score=31.60 Aligned_cols=110 Identities=9% Similarity=0.120 Sum_probs=63.4
Q ss_pred CeEEEEeCCCCCCeEEEEe---CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE-C
Q 018322 231 EGYAIDWNPITTGRLVTGD---CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD-T 306 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs---~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD-~ 306 (358)
.+.+.++++++. .+|... ....++++.. .+... .... ...+..-+|++++. +.+....+...+++- .
T Consensus 25 ~~~s~AvS~dg~-~~A~v~~~~~~~~L~~~~~--~~~~~---~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGS-RVAAVSEGDGGRSLYVGPA--GGPVR---PVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCC-eEEEEEEcCCCCEEEEEcC--CCcce---eecc--CCccccccccCCCC-EEEEEcCCCceEEEEec
Confidence 678999999997 555443 3334444443 23221 1112 23677789999976 776666677777773 3
Q ss_pred CCCCCeeEEEecC--CCCeEEEEEeCCCCcEEEEE--eCCCCEEEEe
Q 018322 307 RVGKSALTSFKAH--NADVNVISWNRLASCLLASG--SDDGTFSIHD 349 (358)
Q Consensus 307 r~~~~~~~~~~~h--~~~V~~i~~~p~~~~~lasg--s~Dg~i~iwD 349 (358)
..+......+... ...|..+.++|+|.++.+.. ..++.|.|=-
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~ 142 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG 142 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE
Confidence 3322222223222 12799999999995444333 2345666543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.98 E-value=30 Score=34.29 Aligned_cols=103 Identities=9% Similarity=0.116 Sum_probs=50.5
Q ss_pred eEEEEeCC------CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC--------cEEEEECCCC
Q 018322 244 RLVTGDCN------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--------HIAIWDTRVG 309 (358)
Q Consensus 244 ~l~sgs~d------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--------~I~iwD~r~~ 309 (358)
+++.|+.. ..+..||+.+ ..|.... ...........+. .++. +++.|+..+ .+.+||+.+.
T Consensus 392 iYv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~-~~p~~r~~~~~~~--~~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 392 IYVIGGISKNDELLKTVECFSLNT-NKWSKGS-PLPISHYGGCAIY--HDGK-IYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred EEEECCcCCCCcccceEEEEeCCC-CeeeecC-CCCccccCceEEE--ECCE-EEEECCccCCCCCcccceEEEecCCCC
Confidence 55666532 4578899876 5554321 1111111111122 2344 777776532 3888998874
Q ss_pred CCeeE-EEecCCCCeEEEEEeCCCCcEEEEEeCC-----CCEEEEeCCCCC
Q 018322 310 KSALT-SFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLK 354 (358)
Q Consensus 310 ~~~~~-~~~~h~~~V~~i~~~p~~~~~lasgs~D-----g~i~iwDlr~~~ 354 (358)
..... ...........+.+ ++ .+++.||.+ ..|.+||..+.+
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCE
Confidence 32111 11111111122222 45 777788754 468888887643
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.95 E-value=4 Score=35.41 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=44.8
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCCCeeEE------Ee-------cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTS------FK-------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~~~~~~------~~-------~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
..+. ++++.+.+|.+++||+...+..+.. +. .....|..+..+.+| .-|++-+ +|..+.|+...
T Consensus 20 ~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 20 CNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred eCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecccc
Confidence 4455 7999999999999999985321111 11 355678889999888 5566554 57888888653
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.83 E-value=0.13 Score=48.84 Aligned_cols=107 Identities=17% Similarity=0.303 Sum_probs=76.6
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC-CCCCeEEEEeCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAIDWNPIT 241 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~ 241 (358)
..++..-.++|..+++.+++.+-..+.+.|||+++.. .....+.+ |..+. +.|++..
T Consensus 72 n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey--------------------tqqLE~gg~~s~sl--l~wsKg~ 129 (615)
T KOG2247|consen 72 NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY--------------------TQQLESGGTSSKSL--LAWSKGT 129 (615)
T ss_pred CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh--------------------HHHHhccCcchHHH--HhhccCC
Confidence 3467777788888887777777788999999998731 11111222 33333 7899988
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEEEECCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg 299 (358)
. .++.|-..|.+.|++...... ....| |...+.+++|.+.+ ..+.|+.|.
T Consensus 130 ~-el~ig~~~gn~viynhgtsR~-----iiv~Gkh~RRgtq~av~lEd--~vil~dcd~ 180 (615)
T KOG2247|consen 130 P-ELVIGNNAGNIVIYNHGTSRR-----IIVMGKHQRRGTQIAVTLED--YVILCDCDN 180 (615)
T ss_pred c-cccccccccceEEEeccchhh-----hhhhcccccceeEEEecccc--eeeecCcHH
Confidence 8 899999999999999876433 23445 89999999999876 466666654
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.33 E-value=8.1 Score=37.56 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=49.1
Q ss_pred CCcEEEEEECCCCCCEEEEEECCCcEEEEECCC-CC-------CeeEEE---------e--cCCCCeEEEEEeCCC--Cc
Q 018322 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV-GK-------SALTSF---------K--AHNADVNVISWNRLA--SC 334 (358)
Q Consensus 276 ~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~-~~-------~~~~~~---------~--~h~~~V~~i~~~p~~--~~ 334 (358)
.-.|..|..++.|. .++-.+-+|.+.++=.|. ++ +++... . ...-.+..++|+|+. ..
T Consensus 103 ~feV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred eEEEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence 34677888999998 666666677665543211 11 111111 1 111245678999986 45
Q ss_pred EEEEEeCCCCEEEEeCCCCC
Q 018322 335 LLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 335 ~lasgs~Dg~i~iwDlr~~~ 354 (358)
.|..-+.|..|+|||+....
T Consensus 182 hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred eEEEEecCcEEEEEecCCcc
Confidence 66667789999999998754
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=85.80 E-value=11 Score=33.42 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=40.6
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
.|+.|..+| ++++++.....+. ...+...|..+...|.-+ +++.-+ |+.++++++...
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~-----~i~~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l 66 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPT-----RILKLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSL 66 (275)
T ss_pred EEEEEECCC-EEEEEecCCccce-----eEeecceEEEEEEecccC-EEEEEc-CCccEEEEchhh
Confidence 899998888 8999983323222 112334499999998877 555554 499999998763
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=85.78 E-value=12 Score=33.85 Aligned_cols=95 Identities=19% Similarity=0.348 Sum_probs=60.5
Q ss_pred cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE------CCCcEEEEECCCCCCeeEEEec-----CCC
Q 018322 253 CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS------VDGHIAIWDTRVGKSALTSFKA-----HNA 321 (358)
Q Consensus 253 ~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s------~Dg~I~iwD~r~~~~~~~~~~~-----h~~ 321 (358)
.||+||+.+ .+|. ..-.+-.+.|++++|..+.. +++.|. ....+..||.... ....+.. -.+
T Consensus 17 ~lC~yd~~~-~qW~---~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~--~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 17 GLCLYDTDN-SQWS---SPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQ--TWSSLGGGSSNSIPG 89 (281)
T ss_pred EEEEEECCC-CEee---cCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCC--eeeecCCcccccCCC
Confidence 689999876 6776 33334567899999986555 777775 4567889998763 2223332 236
Q ss_pred CeEEEEEeC-CCCcEEEEEe-CCC--CEEEEeCCCCC
Q 018322 322 DVNVISWNR-LASCLLASGS-DDG--TFSIHDLRLLK 354 (358)
Q Consensus 322 ~V~~i~~~p-~~~~~lasgs-~Dg--~i~iwDlr~~~ 354 (358)
+|+.+.+.. +...+.+.|. .+| .|..||=.++.
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 788887743 3334555554 333 57777765543
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.61 E-value=52 Score=34.74 Aligned_cols=99 Identities=10% Similarity=0.061 Sum_probs=64.7
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE--ecCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--KAHNA 321 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--~~h~~ 321 (358)
++++|- ...|+||+..+... .+.-..|...+..+...-.+. .++.|.-=++|.+.-.+........+ ..+..
T Consensus 841 kllA~I-n~~vrLye~t~~~e----Lr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~eg~f~evArD~~p~ 914 (1096)
T KOG1897|consen 841 KLLAGI-NQSVRLYEWTTERE----LRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDEGNFEEVARDYNPN 914 (1096)
T ss_pred eEEEec-CcEEEEEEccccce----ehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccCCceEEeehhhCcc
Confidence 666554 67999999977423 234445667777788777777 88889888888887776543223333 45777
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+++++.+-.+. .++-+..+|.+.+--.
T Consensus 915 Wmtaveil~~d--~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 915 WMTAVEILDDD--TYLGAENSGNLFTVRK 941 (1096)
T ss_pred ceeeEEEecCc--eEEeecccccEEEEEe
Confidence 88888877655 3344445666665433
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.97 E-value=29 Score=31.29 Aligned_cols=106 Identities=13% Similarity=0.109 Sum_probs=70.0
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCc-EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGH-VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~-V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
......|.++|..+.-++.+-.-|+ ..+||.+........ ....-..|.||. .|||+|.
T Consensus 67 paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~-------------~s~~~RHfyGHG------vfs~dG~- 126 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL-------------VSQEGRHFYGHG------VFSPDGR- 126 (366)
T ss_pred ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE-------------ecccCceeeccc------ccCCCCc-
Confidence 4445578889988777888777776 568888762110000 012223455654 4899998
Q ss_pred eEEEEeC-----CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEE
Q 018322 244 RLVTGDC-----NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFAS 294 (358)
Q Consensus 244 ~l~sgs~-----dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las 294 (358)
+|...-+ -|.|-|||.+..-.. ...+..|.-.-..+.|.++++ .++.
T Consensus 127 ~LYATEndfd~~rGViGvYd~r~~fqr---vgE~~t~GiGpHev~lm~DGr-tlvv 178 (366)
T COG3490 127 LLYATENDFDPNRGVIGVYDAREGFQR---VGEFSTHGIGPHEVTLMADGR-TLVV 178 (366)
T ss_pred EEEeecCCCCCCCceEEEEecccccce---ecccccCCcCcceeEEecCCc-EEEE
Confidence 7766543 378999999863222 356778888888999999999 4443
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.24 E-value=31 Score=33.67 Aligned_cols=62 Identities=11% Similarity=0.310 Sum_probs=46.7
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
..|++|+|+..|-|+|||--.. . . ...+.+-...|-.|..+.+|..+||+|- ..+.+-|++-
T Consensus 572 esGyIa~as~kGDirLyDRig~-r-A--KtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGK-R-A--KTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcc-h-h--hhcCcccccceeeeEeecCCcEEEEeec--ceEEEEeccc
Confidence 3469999999999999995321 1 1 2456667788999999999997777775 5788888763
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=84.21 E-value=8.2 Score=35.65 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=36.5
Q ss_pred cEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEE-eCCCCEEEEeCCCCCC
Q 018322 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASG-SDDGTFSIHDLRLLKV 355 (358)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasg-s~Dg~i~iwDlr~~~~ 355 (358)
.|-++|+.+. +.+.++.. ...+.+|+.+.+...+|++. ..++.|.+||..+++.
T Consensus 270 eVWv~D~~t~-krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 270 EVWVYDLKTH-KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEEEETTTT-EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EEEEEECCCC-eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 3667788874 45666542 23578999999886677654 4578999999998863
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=83.74 E-value=51 Score=33.14 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=53.6
Q ss_pred eEEEEeCCC-----cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC------cEEEEECCCCCC-
Q 018322 244 RLVTGDCNS-----CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG------HIAIWDTRVGKS- 311 (358)
Q Consensus 244 ~l~sgs~dg-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg------~I~iwD~r~~~~- 311 (358)
+.|+|+.|| +|-.||..+ ..|.... +.......+..+.+ .+. +.++||.++ ++..||..+...
T Consensus 383 iYavGG~dg~~~l~svE~YDp~~-~~W~~va-~m~~~r~~~gv~~~--~g~-iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 383 LYAVGGFDGEKSLNSVECYDPVT-NKWTPVA-PMLTRRSGHGVAVL--GGK-LYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred EEEEeccccccccccEEEecCCC-CcccccC-CCCcceeeeEEEEE--CCE-EEEEcCcCCCccccceEEEEcCCCCcee
Confidence 677787775 466788766 5554211 11111122222222 345 888888554 567888887432
Q ss_pred ---eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCC-----EEEEeCCCCC
Q 018322 312 ---ALTSFKAHNADVNVISWNRLASCLLASGSDDGT-----FSIHDLRLLK 354 (358)
Q Consensus 312 ---~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~-----i~iwDlr~~~ 354 (358)
++.+-+.+. ....+ ++ .+++.||.|+. |..+|.++.+
T Consensus 458 ~~~~M~~~R~~~---g~a~~--~~-~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 458 LIAPMNTRRSGF---GVAVL--NG-KIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ecCCcccccccc---eEEEE--CC-EEEEECCccCCCccceEEEEcCCCCc
Confidence 222222111 12222 34 78888888763 6668777644
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=83.44 E-value=26 Score=33.58 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=53.8
Q ss_pred EEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCc-EEEEEECCC--------------
Q 018322 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS-VEDLQWSPT-------------- 287 (358)
Q Consensus 223 ~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~-V~~v~~sp~-------------- 287 (358)
..+......+.+|..+|.+. +.|+.+.=|.|.|+|+..... .+.++|..+. +.=+.....
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~v----vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVARGIV----VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred EeeccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCCChh----hhhhccCccceEEEEEeecccccccccccccCCC
Confidence 34555666899999999987 888888889999999977422 1334443221 111111000
Q ss_pred ---CCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 288 ---EPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 288 ---~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
...+++-...-|.|-||.++.+. .+..+
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~-Rv~a~ 406 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGP-RVAAF 406 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCC-EEEEE
Confidence 11134445667889999998853 44444
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=83.13 E-value=60 Score=33.48 Aligned_cols=116 Identities=7% Similarity=0.018 Sum_probs=60.5
Q ss_pred CceeEEEEcCCCCcEEEEEeCCC----cEEEEeCCCCccccccccccccCCCCCCCCCCCcE-EEcCCCCCeEEEEeCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADTG----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~ 240 (358)
-.+..+.++|++..++.+...+| .|++.|+.. +..+. .+.+ . . ..++|.++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t---------------------g~~l~~~i~~-~-~-~~~~w~~D 182 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET---------------------GNWYPELLDN-V-E-PSFVWAND 182 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC---------------------CCCCCccccC-c-c-eEEEEeeC
Confidence 45667889999843444433333 477878764 12111 1111 1 1 46999999
Q ss_pred CCCeEEEEeCC-----CcEEEEecCCCCCcccCCCccccCCCcEE-EEEECCCCCCEEEEEEC--CCcEEEEECC
Q 018322 241 TTGRLVTGDCN-----SCIYLWEPASDATWNVDPNPFIGHSASVE-DLQWSPTEPDVFASCSV--DGHIAIWDTR 307 (358)
Q Consensus 241 ~~~~l~sgs~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~las~s~--Dg~I~iwD~r 307 (358)
+.+++++...+ ..|+++++.++.... ...+........ .+..+.++..+++.+.. ++.+.+++..
T Consensus 183 ~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d--~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 183 SWTFYYVRKHPVTLLPYQVWRHTIGTPASQD--ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCEEEEEEecCCCCCCCEEEEEECCCChhHC--eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 88555554422 367777876642111 112222222222 33334466645544443 4678888854
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=83.01 E-value=45 Score=32.00 Aligned_cols=155 Identities=11% Similarity=0.067 Sum_probs=81.9
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC----CCCeEEEEeC
Q 018322 175 TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI----TTGRLVTGDC 250 (358)
Q Consensus 175 p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~~l~sgs~ 250 (358)
+++...|++||..|.++||+....... ...+..-..-..+|..|..-.. ....||+ =.
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~-----------------~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-Lh 95 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQ-----------------PEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LH 95 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCC-----------------CccEEEEEecCCcEEEEEeccccCCCCcceEEE-ec
Confidence 344468999999999999998542110 1112212223457777776432 1113444 33
Q ss_pred CCcEEEEecCCCCCcc-----cCCCccccCC--CcEEEEEECC----CCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 251 NSCIYLWEPASDATWN-----VDPNPFIGHS--ASVEDLQWSP----TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 251 dg~I~lwd~~~~~~~~-----~~~~~~~~h~--~~V~~v~~sp----~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
-..+.+|.+....... ........|. .....+++-| .++.+++.-+.||.+.+|+-+.- ....+-..
T Consensus 96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--~f~~~lp~ 173 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--AFSRFLPD 173 (418)
T ss_pred CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--EEEEEcCC
Confidence 5677777773321110 0011112222 1222233322 22458999999999999987651 11122111
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
---.-.+.+.+.. ..|++++.+..|..|..
T Consensus 174 ~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 174 FLLPGPLCYCPRT-DSFVTASSSWTLECYKY 203 (418)
T ss_pred CCCCcCeEEeecC-CEEEEecCceeEEEecH
Confidence 1112335777766 67777777777777654
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.93 E-value=38 Score=36.47 Aligned_cols=161 Identities=13% Similarity=0.126 Sum_probs=91.1
Q ss_pred eEEEEEeecCCC----CCCceEEEEEeecc-CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEec
Q 018322 89 TAYFVAGTQAEK----PSWNSIGVFKVSNI-SGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVA 163 (358)
Q Consensus 89 ~~~~v~GT~~~~----~~~n~i~i~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (358)
.-|+++||.-.. +..+.++|+++-.+ |.+.. + . .+....++....
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk-P----------------------------~-t~~KlKel~~eE 1095 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK-P----------------------------F-TKNKLKELYIEE 1095 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEecCCCCC-C----------------------------c-ccceeeeeehhh
Confidence 368999997543 34678999988321 11100 0 0 012222344455
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
..|+|.+++-.. | .|+++.. .+|.||++.... ...++. | -.-+++..+.....+
T Consensus 1096 ~KGtVsavceV~-G--~l~~~~G-qKI~v~~l~r~~------------------~ligVa-F--iD~~~yv~s~~~vkn- 1149 (1366)
T KOG1896|consen 1096 QKGTVSAVCEVR-G--HLLSSQG-QKIIVRKLDRDS------------------ELIGVA-F--IDLPLYVHSMKVVKN- 1149 (1366)
T ss_pred cccceEEEEEec-c--EEEEccC-cEEEEEEeccCC------------------cceeeE-E--eccceeEEehhhhhh-
Confidence 779999887554 4 4555333 479999995411 112222 1 122555555555565
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCC-EEEEEECCCcEEEEEC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD-VFASCSVDGHIAIWDT 306 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~las~s~Dg~I~iwD~ 306 (358)
+|+.|+--..|.+.-......... ...-.-..-.+.++.|--+|.+ .|+.+..++.|++|-.
T Consensus 1150 lIl~gDV~ksisfl~fqeep~rls-L~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1150 LILAGDVMKSISFLGFQEEPYRLS-LLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred heehhhhhhceEEEEEccCceEEE-EeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence 888888888888877655322110 0000112345777777766654 4778888999999854
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=82.70 E-value=41 Score=31.78 Aligned_cols=156 Identities=12% Similarity=0.159 Sum_probs=71.1
Q ss_pred CCceeEEEEcCCCCcEEEEEeCC---C-cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC--CCeEEEEeC
Q 018322 165 QGCVNRIRAMTQNPHICASWADT---G-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK--DEGYAIDWN 238 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~d---g-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~s 238 (358)
...+.-+.|+|..|.+|+-|-+- . .-|||-++... .....+..|. ..+..=-|.
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg--------------------~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG--------------------SNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------------------EESS---TTEEEEEEEE-
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC--------------------CcceeeecCCCCccccccccc
Confidence 35567788999888887776542 2 24778776522 1112222221 123334588
Q ss_pred CCCCCeEEEE----eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC---------------
Q 018322 239 PITTGRLVTG----DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--------------- 299 (358)
Q Consensus 239 ~~~~~~l~sg----s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--------------- 299 (358)
|+|..+...+ +.+..|.-+|+.+..... + .......-+--++++. +|+-=+.|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-----~-~~~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~ 319 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-----L-MEMPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIEND 319 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEE-----E-EEE-SEEEEEE-TTSS-EEEEEE------------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceE-----E-EeCCceeeeEEcCCCC-EEEecCCCCCccccccccceecCC
Confidence 8887433322 223356666666532211 1 1112333455578887 665544432
Q ss_pred -cEEEEECCCCCCeeEEEecCC----------C-CeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 300 -HIAIWDTRVGKSALTSFKAHN----------A-DVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 300 -~I~iwD~r~~~~~~~~~~~h~----------~-~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
.|+++++..+. ...+..|. . .=-..+|+|++..+|.+....|...||=
T Consensus 320 p~i~~~~~~~~~--~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 320 PWIYLFDVEAGR--FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp -EEEEEETTTTE--EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred cEEEEeccccCc--eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence 56677776532 12222221 1 1134689999977777887888777764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=82.12 E-value=22 Score=32.99 Aligned_cols=109 Identities=12% Similarity=0.181 Sum_probs=56.9
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCC--cccCC-CccccCCCcEEEEEECCC---CCCEEEEEECC------
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT--WNVDP-NPFIGHSASVEDLQWSPT---EPDVFASCSVD------ 298 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~--~~~~~-~~~~~h~~~V~~v~~sp~---~~~~las~s~D------ 298 (358)
..++|+|.|++. |+++...|.|++++. .+.. ..... ............++++|+ ...++++.+..
T Consensus 3 ~P~~~a~~pdG~--l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGR--LLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSC--EEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCc--EEEEeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 457899999974 555677999999993 3221 11111 223334567899999994 23244444422
Q ss_pred C--cEEEEECCCCC------CeeE-EEec---CCCCeEEEEEeCCCCcEEEEEeCCC
Q 018322 299 G--HIAIWDTRVGK------SALT-SFKA---HNADVNVISWNRLASCLLASGSDDG 343 (358)
Q Consensus 299 g--~I~iwD~r~~~------~~~~-~~~~---h~~~V~~i~~~p~~~~~lasgs~Dg 343 (358)
. .|.-|...... ..+. .+.. ....-..|.|.|++ .++++.++.+
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~ 135 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCC
Confidence 1 23333332210 1111 1122 23345779999999 7777766543
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=81.91 E-value=39 Score=30.51 Aligned_cols=78 Identities=14% Similarity=0.245 Sum_probs=46.2
Q ss_pred CCCCeEEEEeCCCCCCeEEEEe------CCCcEEEEecCCCCCcccCCCcc-ccCCCcEEEEEECC-CCCCEEEEEE-CC
Q 018322 228 HKDEGYAIDWNPITTGRLVTGD------CNSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSP-TEPDVFASCS-VD 298 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs------~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp-~~~~~las~s-~D 298 (358)
-.+.|++|.|..... ++++|. ....+..||+.+ ..|....... ..-.++|+.+.+.. +..++++.|. .+
T Consensus 35 i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~-~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~ 112 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKN-QTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN 112 (281)
T ss_pred ceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCC-CeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecC
Confidence 345899999986655 677764 456788899876 4553211111 12346788887743 3333665554 33
Q ss_pred C--cEEEEECC
Q 018322 299 G--HIAIWDTR 307 (358)
Q Consensus 299 g--~I~iwD~r 307 (358)
| .|..||=.
T Consensus 113 g~~~l~~~dGs 123 (281)
T PF12768_consen 113 GSTFLMKYDGS 123 (281)
T ss_pred CCceEEEEcCC
Confidence 3 46666543
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=81.75 E-value=41 Score=30.65 Aligned_cols=122 Identities=12% Similarity=0.176 Sum_probs=72.5
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCC---CcccCCCccc-----cCCCcEEEEEECCCCC-----------C
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA---TWNVDPNPFI-----GHSASVEDLQWSPTEP-----------D 290 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~---~~~~~~~~~~-----~h~~~V~~v~~sp~~~-----------~ 290 (358)
...|.|+++|.+. +.++....+...+||..... ........+. .-....+.+.|+.... .
T Consensus 23 ~N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 23 RNAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 3578999999987 77887778999999986211 1000001111 1234566777764322 2
Q ss_pred EEEEEECCCcEEEEECCCCCC----eeEEEecC-CCCe-EEEEEeC--CCCcEEEEEeCCCCEEEEeCCC
Q 018322 291 VFASCSVDGHIAIWDTRVGKS----ALTSFKAH-NADV-NVISWNR--LASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~----~~~~~~~h-~~~V-~~i~~~p--~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.|+.++.||+|.-|....... .+..+... ...| .-+++.. .+..+.|+=-..++|.+||-.-
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 488999999999998644222 22223211 2334 3345543 3435555555789999998653
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=81.54 E-value=7.9 Score=22.91 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=21.9
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCC--CCEEEE
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDD--GTFSIH 348 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~D--g~i~iw 348 (358)
......-....|+|+|..++.++..+ |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455667889999996666677677 777776
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=81.50 E-value=73 Score=33.35 Aligned_cols=129 Identities=14% Similarity=0.099 Sum_probs=77.5
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE--c-CCCCCeEEEEeCCCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--G-GHKDEGYAIDWNPITT 242 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~h~~~v~~l~~s~~~~ 242 (358)
.+...|+|+|.....||+....|...||++..........-.. .......+ . .....-..|.|.++..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~---------~~~~~gsi~~d~~e~s~w~rI~W~~~~~ 216 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRL---------SRNISGSIIFDPEELSNWKRILWVSDSN 216 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceee---------ccCCCccccCCCcccCcceeeEecCCCC
Confidence 4778899999887899999999999999992211110000000 00000111 0 0113445889988876
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
.|+.++ ...+.++|+.+...... .........|.+++-+|.....++.- ....|...+++.
T Consensus 217 -~lLv~~-r~~l~~~d~~~~~~~~~--l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 217 -RLLVCN-RSKLMLIDFESNWQTEY--LVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred -EEEEEc-CCceEEEECCCCCccch--hccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 788877 45789999976433111 11222456799999998844333333 236788888877
|
These proteins are found in fungi. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=81.47 E-value=12 Score=32.43 Aligned_cols=68 Identities=12% Similarity=0.216 Sum_probs=46.3
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccC--CCccc--------cCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVD--PNPFI--------GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~--~~~~~--------~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
..+. +|++-..+|.+++||+.+....... ..++. .....|..+..+.+|. -+++-+ +|..+.|+...
T Consensus 20 ~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 20 CNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred eCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEEEecccc
Confidence 3455 8888899999999999874322111 11111 3556788899998886 566655 47889998876
Q ss_pred C
Q 018322 309 G 309 (358)
Q Consensus 309 ~ 309 (358)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.24 E-value=69 Score=32.85 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=24.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRS 197 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~ 197 (358)
+.+-.+.|+.+. -|++-..+|+|++|++..
T Consensus 84 ~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 84 GELIGMGWSDDE--ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred CCeeeecccCCc--eEEEEeccceEEEeecch
Confidence 478888898877 455568999999999876
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.34 E-value=45 Score=30.19 Aligned_cols=125 Identities=10% Similarity=0.156 Sum_probs=74.2
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEe
Q 018322 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD 249 (358)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs 249 (358)
.|.+...+ .++++-=.++.+.++.+........... ..-++...........+++|.|... .|..+-
T Consensus 133 ~Ieyig~n-~fvi~dER~~~l~~~~vd~~t~~~~~~~-----------~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aK 199 (316)
T COG3204 133 TIEYIGGN-QFVIVDERDRALYLFTVDADTTVISAKV-----------QKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAK 199 (316)
T ss_pred HeEEecCC-EEEEEehhcceEEEEEEcCCccEEeccc-----------eEEeccccCCCCcCceeeecCCCCc-eEEEEE
Confidence 34555444 5555555677888887766322211100 0011111212244677999999998 777777
Q ss_pred CCCcEEEEecCCCCCcccCCCccccCC-------CcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 250 CNSCIYLWEPASDATWNVDPNPFIGHS-------ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~~~~~~~~h~-------~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
...-+.||.+....... .......++ ..|.++.|++...++++-+..++.+.-.|..-
T Consensus 200 Er~P~~I~~~~~~~~~l-~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 200 ERNPIGIFEVTQSPSSL-SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccCCcEEEEEecCCccc-ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 77788888775322111 011111122 35677889988777899999999998888775
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=80.15 E-value=55 Score=32.13 Aligned_cols=98 Identities=18% Similarity=0.265 Sum_probs=54.9
Q ss_pred eEEEEeCCCcEEEEecCCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEE-----------------ECCCcEEEEE
Q 018322 244 RLVTGDCNSCIYLWEPASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASC-----------------SVDGHIAIWD 305 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~-----------------s~Dg~I~iwD 305 (358)
.++.++.+|.+...|..++.. |.. ... ...++.+| +. +++.. ..+|.|.-.|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~---~~~-----~~~~~~~~-~~-vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISAR---PEV-----EQPMAYDP-GL-VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEe---Eee-----ccccccCC-ce-EEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 577888899999999987532 210 010 11123333 21 33311 2357788888
Q ss_pred CCCCCCeeEEEecCC--------CCe--EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 306 TRVGKSALTSFKAHN--------ADV--NVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~--------~~V--~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+++++ .+.+..... ... ..+.. .+ .+|+.|+.||.|+.+|.++++.
T Consensus 373 ~~tG~-~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 373 PKTGK-VVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred CCCCc-EeeEeeCCccccccccCCcccCcceEe--cC-CeEEEECCCCeEEEEECCCCce
Confidence 88753 444432210 111 11111 33 5788888999999999988764
|
The alignment model contains an 8-bladed beta-propeller. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 358 | ||||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 3e-24 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 3e-24 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-23 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-23 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-23 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-23 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-09 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-06 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 3e-06 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 1e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 4e-04 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 6e-04 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 7e-04 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 7e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 8e-04 |
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.98 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.97 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.97 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.96 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.96 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.96 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.96 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.96 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.96 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.96 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.96 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.96 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.96 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.96 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.95 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.95 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.95 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.95 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.95 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.95 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.95 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.95 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.95 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.95 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.94 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.94 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.94 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.94 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.94 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.94 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.94 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.94 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.94 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.94 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.94 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.94 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.93 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.93 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.93 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.93 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.93 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.93 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.93 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.93 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.93 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.93 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.93 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.93 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.93 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.93 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.93 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.93 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.93 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.93 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.93 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.93 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.93 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.93 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.92 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.92 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.92 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.92 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.92 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.92 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.92 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.92 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.92 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.92 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.92 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.92 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.92 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.91 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.91 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.91 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.91 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.91 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.91 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.91 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.91 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.91 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.91 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.91 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.9 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.9 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.9 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.9 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.9 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.9 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.9 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.89 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.89 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.89 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.89 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.88 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.88 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.88 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.87 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.87 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.86 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.86 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.86 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.86 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.86 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.86 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.82 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.82 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.81 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.8 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.79 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.79 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.76 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.75 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.71 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.69 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.63 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.63 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.62 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.62 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.62 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.59 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.57 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.57 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.56 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.55 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.55 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.54 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.54 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.54 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.52 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.5 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.49 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.49 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.49 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.47 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.46 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.45 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.45 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.44 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.43 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.43 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.42 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.38 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.37 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.35 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.31 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.3 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.26 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.24 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.21 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.18 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.18 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.17 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.16 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.16 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.13 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.12 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.11 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.11 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.05 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.04 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.03 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.03 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.02 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.02 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.01 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.96 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.96 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.95 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.91 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.9 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.88 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.81 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.79 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.76 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.73 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.72 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.72 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.71 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.71 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.7 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.67 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.61 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.61 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.57 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.56 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.56 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.53 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.53 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.53 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.52 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.51 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.51 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.47 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.43 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.43 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.32 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.25 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.23 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.08 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.05 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.04 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.01 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.0 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.99 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.98 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.95 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.95 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.94 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.88 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.85 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.76 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.71 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.67 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.67 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.66 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.61 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.59 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.58 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.5 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.49 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.48 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.47 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.44 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.43 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.35 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.33 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.33 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.32 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.32 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.31 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.25 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.25 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.18 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.13 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.07 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.06 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.03 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.96 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.94 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.93 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.9 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.9 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.88 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.88 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.86 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.83 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.75 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.51 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.47 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.43 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 96.35 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 96.31 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.3 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.25 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 96.23 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.22 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.2 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.16 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.11 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.05 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.02 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 95.89 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 95.78 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.69 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.65 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 95.52 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.51 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.44 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.31 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 95.22 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 94.95 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 94.95 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 94.59 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 94.35 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 94.3 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 94.26 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 94.21 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 94.14 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 94.1 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 94.05 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 93.91 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.84 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 93.58 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 92.99 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 92.51 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 92.31 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 92.1 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 91.74 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 91.68 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 91.67 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 91.54 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 90.99 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 90.9 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 90.88 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 90.32 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 90.3 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 90.27 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 90.21 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 90.07 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 90.06 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 89.52 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 89.47 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 89.36 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 89.22 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 88.78 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 88.3 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 87.58 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 87.2 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 86.5 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 86.48 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 86.2 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 86.2 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 84.01 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 82.83 |
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=330.62 Aligned_cols=283 Identities=29% Similarity=0.498 Sum_probs=219.1
Q ss_pred CCCeeeeCCcccCCCCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEe
Q 018322 32 LPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKV 111 (358)
Q Consensus 32 ~~~~~~~p~~~~~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~ 111 (358)
++.++|+...+ +||+++|++.++||||+|||+|+..+..+.+|| .++|++||++.+ ..|+|+|+++
T Consensus 23 ~~~~~wk~n~~------------~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~-~~~~~~GT~t~~-~~n~i~i~~~ 88 (430)
T 2xyi_A 23 EEYKIWKKNTP------------FLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYS-VHRLILGTHTSD-EQNHLLIASV 88 (430)
T ss_dssp HHHHHHHHHHH------------HHEEEEEEEECSSCCSCEEECSCCEECTTCSCE-EEEEEEECCCSS-SCEEEEEEEE
T ss_pred HHHhhHhhCCh------------HHHHHHhhcCCCCCceEEEECcccccccCCCcc-eEEEEEEEcCCC-CCCEEEEEEE
Confidence 34667777655 999999999999999999999999888888898 599999999998 9999999999
Q ss_pred eccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCC--CCCCeE-EEEEecCCCceeEEEEcCCCCcEEEEEeCCC
Q 018322 112 SNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGG--SGTPIL-QLRKVAHQGCVNRIRAMTQNPHICASWADTG 188 (358)
Q Consensus 112 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg 188 (358)
. ++...... ++.++ ++++++.++ ...+.+ ....+.|.+.|++++|+|+++.+||+++.+|
T Consensus 89 ~-lp~~~~~~------------~~~~~----d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg 151 (430)
T 2xyi_A 89 Q-LPSEDAQF------------DGSHY----DNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSS 151 (430)
T ss_dssp E-EC------------------------------------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSS
T ss_pred E-CCCCcccc------------ccccc----cccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCC
Confidence 6 44321110 11111 111111110 124444 4778899999999999998658999999999
Q ss_pred cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc---
Q 018322 189 HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW--- 265 (358)
Q Consensus 189 ~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~--- 265 (358)
.|+||++.......... ....++..+.+|...|++|+|+|.+.++|++|+.||.|++|++......
T Consensus 152 ~V~vwd~~~~~~~~~~~-----------~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 220 (430)
T 2xyi_A 152 DVLVFDYTKHPSKPEPS-----------GECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV 220 (430)
T ss_dssp CEEEEEGGGSCSSCCTT-----------CCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE
T ss_pred cEEEEECCCcccccCcc-----------ccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce
Confidence 99999997632221100 1256778899999999999999998879999999999999999873321
Q ss_pred ccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC--CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCC
Q 018322 266 NVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SALTSFKAHNADVNVISWNRLASCLLASGSDDG 343 (358)
Q Consensus 266 ~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg 343 (358)
......+.+|...|.+++|+|.+..+|++|+.||.|++||++.+. .++..+..|...|++|+|+|++..+|++|+.||
T Consensus 221 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg 300 (430)
T 2xyi_A 221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300 (430)
T ss_dssp EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC
Confidence 111345668999999999999766699999999999999999853 467778899999999999999967999999999
Q ss_pred CEEEEeCCCCCCC
Q 018322 344 TFSIHDLRLLKVR 356 (358)
Q Consensus 344 ~i~iwDlr~~~~~ 356 (358)
.|+|||+++.+.+
T Consensus 301 ~v~vwd~~~~~~~ 313 (430)
T 2xyi_A 301 TVALWDLRNLKLK 313 (430)
T ss_dssp EEEEEETTCTTSC
T ss_pred eEEEEeCCCCCCC
Confidence 9999999986654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-31 Score=243.11 Aligned_cols=210 Identities=17% Similarity=0.253 Sum_probs=171.6
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
+-+..++.|.|+. +|++|+ .++.|.||++..-
T Consensus 82 ~~~v~~~~~s~d~------------~l~~~s-----~dg~v~lWd~~~~------------------------------- 113 (344)
T 4gqb_B 82 EAGVADLTWVGER------------GILVAS-----DSGAVELWELDEN------------------------------- 113 (344)
T ss_dssp SSCEEEEEEETTT------------EEEEEE-----TTSEEEEEEECTT-------------------------------
T ss_pred CCCEEEEEEeCCC------------eEEEEE-----CCCEEEEEeccCC-------------------------------
Confidence 4456677787763 577776 4679999998310
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
.....+.....+|.+.|++|+|+|++ .+||+|+.||+|+|||+.. .+++..+
T Consensus 114 ------~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~---------------------~~~~~~~ 165 (344)
T 4gqb_B 114 ------ETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQ---------------------QVVLSSY 165 (344)
T ss_dssp ------SSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEE
T ss_pred ------CceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEE
Confidence 01234445677999999999999999 7999999999999999987 5778889
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
.+|...|++++|++++..+|++|+.|++|++||++++.... ......|...+.+++|+|.+..+|++|+.||+|+|||
T Consensus 166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd 243 (344)
T 4gqb_B 166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPAS--QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243 (344)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEE--ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred cCcCCceEEEEecCCCCCceeeeccccccccccccccceee--eeecceeeccceeeeecCCCCcceEEeccCCcEEEEE
Confidence 99999999999999987689999999999999998744322 1123446678999999998777999999999999999
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
++++ .++..+.+|...|++++|+|++..+||+|+.||+|+|||+++.+
T Consensus 244 ~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 244 TKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE 291 (344)
T ss_dssp SCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE
T ss_pred CCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc
Confidence 9985 57888999999999999999986789999999999999998753
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.7e-30 Score=238.29 Aligned_cols=204 Identities=21% Similarity=0.262 Sum_probs=167.4
Q ss_pred CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (358)
Q Consensus 67 wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
-+..++.|.|++ .+|+.|+ .++.|.||++.
T Consensus 128 ~~V~~v~~spdg-----------~~l~sgs-----~d~~i~iwd~~---------------------------------- 157 (344)
T 4gqb_B 128 DIVSTVSVLSSG-----------TQAVSGS-----KDICIKVWDLA---------------------------------- 157 (344)
T ss_dssp SCEEEEEECTTS-----------SEEEEEE-----TTSCEEEEETT----------------------------------
T ss_pred CCEEEEEECCCC-----------CEEEEEe-----CCCeEEEEECC----------------------------------
Confidence 456677777774 4778777 45689999873
Q ss_pred ccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE-
Q 018322 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF- 225 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 225 (358)
.......+.+|.+.|+++.|+|++..+|++++.||+|+|||+.. .++...+
T Consensus 158 -------~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~---------------------~~~~~~~~ 209 (344)
T 4gqb_B 158 -------QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC---------------------PKPASQIG 209 (344)
T ss_dssp -------TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS---------------------SSCEEECC
T ss_pred -------CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc---------------------cceeeeee
Confidence 33455677899999999999999878999999999999999987 3444444
Q ss_pred -cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEE
Q 018322 226 -GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (358)
Q Consensus 226 -~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (358)
..|...+.+++|+|.+..+|++|+.||+|++||++++.. ...+.+|...|++|+|+|++..+||+|+.|++|+||
T Consensus 210 ~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~----~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vw 285 (344)
T 4gqb_B 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC----VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL 285 (344)
T ss_dssp ----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C----CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEE
T ss_pred cceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE----EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEE
Confidence 345567999999997765899999999999999987432 367889999999999999986689999999999999
Q ss_pred ECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 305 DTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|++++ .+..+.+|...|++++|+|++..+|+|||.||+|++|++.+..
T Consensus 286 d~~~~--~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 286 DSSLS--ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CTTCC--EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred ECCCC--cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 99874 4566789999999999999997789999999999999997654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-29 Score=225.58 Aligned_cols=205 Identities=20% Similarity=0.326 Sum_probs=170.0
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-|..++.|.|++ .+|++|+ .++.|.||++.
T Consensus 55 ~~~v~~~~~~~~~-----------~~l~s~s-----~d~~i~vwd~~--------------------------------- 85 (304)
T 2ynn_A 55 ETPVRAGKFIARK-----------NWIIVGS-----DDFRIRVFNYN--------------------------------- 85 (304)
T ss_dssp SSCEEEEEEEGGG-----------TEEEEEE-----TTSEEEEEETT---------------------------------
T ss_pred CCcEEEEEEeCCC-----------CEEEEEC-----CCCEEEEEECC---------------------------------
Confidence 4577788888875 4788887 56799999872
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
.......+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.. .......+
T Consensus 86 --------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~--------------------~~~~~~~~ 136 (304)
T 2ynn_A 86 --------TGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWEN--------------------NWALEQTF 136 (304)
T ss_dssp --------TCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGG--------------------TTEEEEEE
T ss_pred --------CCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCC--------------------Ccchhhhh
Confidence 222335667899999999999999 7999999999999999876 23445678
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC--CCCCEEEEEECCCcEEE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP--TEPDVFASCSVDGHIAI 303 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp--~~~~~las~s~Dg~I~i 303 (358)
.+|...|.+++|+|.+..+|++|+.|++|++||++...... ....+|...|..++|+| ++. +|++|+.|++|+|
T Consensus 137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~i 212 (304)
T 2ynn_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF---TLTTGQERGVNYVDYYPLPDKP-YMITASDDLTIKI 212 (304)
T ss_dssp CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE---EEECCCTTCEEEEEECCSTTCC-EEEEEETTSEEEE
T ss_pred cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc---eeccCCcCcEEEEEEEEcCCCC-EEEEEcCCCeEEE
Confidence 89999999999999644499999999999999997643221 22345678899999987 455 9999999999999
Q ss_pred EECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 304 WDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
||++++ .++..+.+|...|++++|+|++ .+|++|+.||+|+|||+++++
T Consensus 213 Wd~~~~-~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 213 WDYQTK-SCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp EETTTT-EEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCC
T ss_pred EeCCCC-ccceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc
Confidence 999984 5888899999999999999999 899999999999999998765
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-29 Score=225.04 Aligned_cols=203 Identities=17% Similarity=0.255 Sum_probs=169.5
Q ss_pred cceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018322 68 PCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDD 147 (358)
Q Consensus 68 P~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (358)
+..++.|-|++ .+|++|. .++.|.||++.
T Consensus 15 ~V~~~~fsp~~-----------~~l~s~~-----~dg~v~lWd~~----------------------------------- 43 (304)
T 2ynn_A 15 RVKGIDFHPTE-----------PWVLTTL-----YSGRVELWNYE----------------------------------- 43 (304)
T ss_dssp CEEEEEECSSS-----------SEEEEEE-----TTSEEEEEETT-----------------------------------
T ss_pred ceEEEEECCCC-----------CEEEEEc-----CCCcEEEEECC-----------------------------------
Confidence 45688888875 4778777 45699999873
Q ss_pred cCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC
Q 018322 148 EEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (358)
Q Consensus 148 ~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (358)
.......+..|...|++++|+|++ .+|++|+.|++|+|||+.. ...+..+.+
T Consensus 44 ------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~---------------------~~~~~~~~~ 95 (304)
T 2ynn_A 44 ------TQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNT---------------------GEKVVDFEA 95 (304)
T ss_dssp ------TTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTT---------------------CCEEEEEEC
T ss_pred ------CCceeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCC---------------------CcEEEEEeC
Confidence 233445667899999999999998 7999999999999999987 567788999
Q ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
|...|++++|+|++. +|++|+.||+|++||+++.... ...+.+|...|.+++|+|.+..+|++|+.|++|++||++
T Consensus 96 h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~---~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~ 171 (304)
T 2ynn_A 96 HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWAL---EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171 (304)
T ss_dssp CSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEE---EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETT
T ss_pred CCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcch---hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 999999999999998 9999999999999999764332 245788999999999999655599999999999999998
Q ss_pred CCCCeeEEEecCCCCeEEEEEeC--CCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 308 VGKSALTSFKAHNADVNVISWNR--LASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~~p--~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
...........|...|+.+.|+| ++ .+|++|+.||+|+|||+++.+
T Consensus 172 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 172 QSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKS 219 (304)
T ss_dssp CSSCSEEEECCCTTCEEEEEECCSTTC-CEEEEEETTSEEEEEETTTTE
T ss_pred CCCccceeccCCcCcEEEEEEEEcCCC-CEEEEEcCCCeEEEEeCCCCc
Confidence 85433333356778899999987 45 799999999999999998764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-29 Score=227.51 Aligned_cols=164 Identities=20% Similarity=0.299 Sum_probs=148.4
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
...+..|...|.+++|+|++ .+||+|+.||.|+|||+.. .+.+..+.+|...|++++|
T Consensus 157 ~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~---------------------~~~~~~~~~h~~~v~~l~~ 214 (321)
T 3ow8_A 157 EYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIAT---------------------GKLLHTLEGHAMPIRSLTF 214 (321)
T ss_dssp EEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCCCEEEE
T ss_pred eEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCC---------------------CcEEEEEcccCCceeEEEE
Confidence 34566788999999999999 7999999999999999986 5667788999999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
+|++. +|++|+.||+|++||++.... . ..+.+|...|.+++|+|++. +|++|+.|++|+|||++++ .++..+.
T Consensus 215 spd~~-~l~s~s~dg~i~iwd~~~~~~-~---~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~~-~~~~~~~ 287 (321)
T 3ow8_A 215 SPDSQ-LLVTASDDGYIKIYDVQHANL-A---GTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGTR-TCVHTFF 287 (321)
T ss_dssp CTTSC-EEEEECTTSCEEEEETTTCCE-E---EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT-EEEEEEC
T ss_pred cCCCC-EEEEEcCCCeEEEEECCCcce-e---EEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCC-EEEEEEc
Confidence 99998 999999999999999987432 2 56788999999999999998 9999999999999999984 6888889
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.|...|++++|+|++ .+|++++.||+|+|||+.
T Consensus 288 ~h~~~v~~v~~s~~g-~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 288 DHQDQVWGVKYNGNG-SKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTCCEEEEECC
T ss_pred CCCCcEEEEEECCCC-CEEEEEeCCCeEEEEeCC
Confidence 999999999999999 899999999999999963
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=229.97 Aligned_cols=172 Identities=19% Similarity=0.316 Sum_probs=151.4
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
.....+|.+.|++++|+|++ .+|++|+.||+|+|||+.. .+++..+.+|...|++++|
T Consensus 132 ~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~---------------------~~~~~~~~~h~~~v~~v~~ 189 (357)
T 4g56_B 132 KFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQ---------------------KAVLKSYNAHSSEVNCVAA 189 (357)
T ss_dssp CEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEEE
T ss_pred eeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEEcCCCCCEEEEEE
Confidence 35567899999999999999 7999999999999999987 5677889999999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
++++.++|++++.||+|++||++++.... ...+..|...+.+++|+|++..+|++|+.|+.|++||++++ .++..+.
T Consensus 190 s~~~~~~~~s~~~dg~v~~wd~~~~~~~~--~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~ 266 (357)
T 4g56_B 190 CPGKDTIFLSCGEDGRILLWDTRKPKPAT--RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSA 266 (357)
T ss_dssp CTTCSSCEEEEETTSCEEECCTTSSSCBC--BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEEC
T ss_pred ccCCCceeeeeccCCceEEEECCCCceee--eeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEe
Confidence 99987789999999999999998744322 23345677889999999998779999999999999999985 5778889
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.|...|++++|+|++..+||+|+.||+|+|||+++.+
T Consensus 267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 9999999999999987899999999999999998754
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=227.89 Aligned_cols=205 Identities=20% Similarity=0.246 Sum_probs=166.1
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|.|++ .+|+.|+ .++.|.||++.
T Consensus 139 ~~~V~~v~~spdg-----------~~l~sgs-----~dg~v~iwd~~--------------------------------- 169 (357)
T 4g56_B 139 DDIVKTLSVFSDG-----------TQAVSGG-----KDFSVKVWDLS--------------------------------- 169 (357)
T ss_dssp SSCEEEEEECSSS-----------SEEEEEE-----TTSCEEEEETT---------------------------------
T ss_pred CCCEEEEEECCCC-----------CEEEEEe-----CCCeEEEEECC---------------------------------
Confidence 3466788888875 4777777 45689999762
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE--
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-- 223 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 223 (358)
.......+.+|.+.|++++|+|++..++++++.||+|+|||+... ++..
T Consensus 170 --------~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~---------------------~~~~~~ 220 (357)
T 4g56_B 170 --------QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP---------------------KPATRI 220 (357)
T ss_dssp --------TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS---------------------SCBCBC
T ss_pred --------CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCC---------------------ceeeee
Confidence 334556677899999999999998779999999999999999762 2222
Q ss_pred EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
.+..|...+.+++|+|++..+|++|+.|+.|++||++++.. ...+.+|...|++++|+|++..+||+|+.|++|+|
T Consensus 221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~i 296 (357)
T 4g56_B 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS----AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAV 296 (357)
T ss_dssp CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG----CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred eeccccccccchhhhhcccceEEEeecccceeEEECCCCcE----eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 23456778999999998765899999999999999987432 35678899999999999998768999999999999
Q ss_pred EECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 304 WDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
||++++ + +....+|...|++|+|+|....+|+||+.||+|++||+.+..
T Consensus 297 wd~~~~-~-~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 297 LDADFS-E-VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ECTTSC-E-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EECCCC-c-EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999974 3 344568999999999999433899999999999999997643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=226.74 Aligned_cols=206 Identities=18% Similarity=0.303 Sum_probs=169.3
Q ss_pred cceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018322 68 PCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDD 147 (358)
Q Consensus 68 P~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (358)
++..+.|-|++ .+|++|. .++.|.||++..
T Consensus 18 ~v~~l~~sp~g-----------~~las~~-----~D~~i~iw~~~~---------------------------------- 47 (345)
T 3fm0_A 18 RCWFLAWNPAG-----------TLLASCG-----GDRRIRIWGTEG---------------------------------- 47 (345)
T ss_dssp CEEEEEECTTS-----------SCEEEEE-----TTSCEEEEEEET----------------------------------
T ss_pred cEEEEEECCCC-----------CEEEEEc-----CCCeEEEEEcCC----------------------------------
Confidence 56788898885 4677777 466899998841
Q ss_pred cCCCCCCCeEE-EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc
Q 018322 148 EEGGSGTPILQ-LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (358)
Q Consensus 148 ~~~~~~~~~~~-~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
...... ....+|.+.|++++|+|++ .+||+|+.|++|+||++... ....+..+.
T Consensus 48 -----~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~-------------------~~~~~~~~~ 102 (345)
T 3fm0_A 48 -----DSWICKSVLSEGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQD-------------------DFECVTTLE 102 (345)
T ss_dssp -----TEEEEEEEECSSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC--------------------EEEEEEEC
T ss_pred -----CcceeeeeeccccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCC-------------------CeEEEEEcc
Confidence 011222 2335799999999999998 79999999999999998762 124567789
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
+|...|++++|+|++. +|++|+.|++|++||++..... .....+.+|...|.+++|+|++. +|++|+.|++|++||+
T Consensus 103 ~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~ 179 (345)
T 3fm0_A 103 GHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEY-ECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYRE 179 (345)
T ss_dssp CCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCE-EEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEE
T ss_pred CCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCe-EEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEe
Confidence 9999999999999998 9999999999999999764331 11245678999999999999998 9999999999999999
Q ss_pred CCCC-CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 307 RVGK-SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 307 r~~~-~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+.+. .+...+.+|...|++++|+|++ .+|++|+.||+|+|||++.
T Consensus 180 ~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 180 EEDDWVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEEEC
T ss_pred cCCCEEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeEEEecccc
Confidence 8743 2456778999999999999999 9999999999999999754
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-28 Score=222.04 Aligned_cols=166 Identities=17% Similarity=0.226 Sum_probs=144.6
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.....+.+|.+.|+++.|+|++ .++++|+.||+|++||+.. ..++..+.+|...|+++
T Consensus 175 ~~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~---------------------~~~~~~~~~h~~~v~~v 232 (340)
T 1got_B 175 QQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVRE---------------------GMCRQTFTGHESDINAI 232 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CSEEEEECCCSSCEEEE
T ss_pred cEEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCC---------------------CeeEEEEcCCcCCEEEE
Confidence 3445677899999999999988 7999999999999999986 56778899999999999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
+|+|++. +|++|+.||+|++||++...... ......+...|.+++|+|++. +|++|+.||.|++||++.+ ..+..
T Consensus 233 ~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~-~~~~~ 307 (340)
T 1got_B 233 CFFPNGN-AFATGSDDATCRLFDLRADQELM--TYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKA-DRAGV 307 (340)
T ss_dssp EECTTSS-EEEEEETTSCEEEEETTTTEEEE--EECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC-CEEEE
T ss_pred EEcCCCC-EEEEEcCCCcEEEEECCCCcEEE--EEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEcccC-cEeeE
Confidence 9999998 99999999999999998743211 111223445799999999998 9999999999999999985 57778
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
+.+|...|++++|+|++ .+|+||+.||+|+|||
T Consensus 308 ~~~h~~~v~~~~~s~dg-~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 308 LAGHDNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred eecCCCcEEEEEEcCCC-CEEEEEcCCccEEecC
Confidence 89999999999999999 8999999999999997
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=221.20 Aligned_cols=171 Identities=25% Similarity=0.420 Sum_probs=147.1
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.....+.+|.+.|++++|+|++ .++++++.|++|+|||+.. ...+..+.+|...|+++
T Consensus 67 ~~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~---------------------~~~~~~~~~h~~~v~~v 124 (343)
T 2xzm_R 67 IPHKALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRT---------------------GTTYKRFVGHQSEVYSV 124 (343)
T ss_dssp EEEEEECCCSSCEEEEEECSST-TEEEEEETTSEEEEEETTS---------------------SCEEEEEECCCSCEEEE
T ss_pred cccchhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCC---------------------CcEEEEEcCCCCcEEEE
Confidence 3445678999999999999998 7999999999999999987 56777899999999999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC---------CEEEEEECCCcEEEEEC
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP---------DVFASCSVDGHIAIWDT 306 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~---------~~las~s~Dg~I~iwD~ 306 (358)
+|+|++. +|++|+.|++|++||+... . ........+|...|.+++|+|.+. .+|++++.||.|++||.
T Consensus 125 ~~sp~~~-~l~s~~~d~~i~~wd~~~~-~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 201 (343)
T 2xzm_R 125 AFSPDNR-QILSAGAEREIKLWNILGE-C-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT 201 (343)
T ss_dssp EECSSTT-EEEEEETTSCEEEEESSSC-E-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET
T ss_pred EECCCCC-EEEEEcCCCEEEEEeccCC-c-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC
Confidence 9999998 9999999999999999742 1 111233457899999999999872 38999999999999995
Q ss_pred CCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 307 RVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+. .....+.+|...|++++|+|++ .+|++|+.||.|+|||+++..
T Consensus 202 ~~--~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 202 NF--QIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp TT--EEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCS
T ss_pred CC--ceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCc
Confidence 43 4667788999999999999999 999999999999999996544
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=231.51 Aligned_cols=202 Identities=20% Similarity=0.296 Sum_probs=172.1
Q ss_pred CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (358)
Q Consensus 67 wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
-|..++.|.|+. .+|++|+ .++.|.||++.
T Consensus 109 ~~V~~~~~~p~~-----------~~l~s~s-----~Dg~i~vwd~~---------------------------------- 138 (410)
T 1vyh_C 109 SPVTRVIFHPVF-----------SVMVSAS-----EDATIKVWDYE---------------------------------- 138 (410)
T ss_dssp SCEEEEEECSSS-----------SEEEEEE-----SSSCEEEEETT----------------------------------
T ss_pred CcEEEEEEcCCC-----------CEEEEEe-----CCCeEEEEECC----------------------------------
Confidence 466677777764 4777777 46689999873
Q ss_pred ccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc
Q 018322 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
.......+.+|.+.|++++|+|++ .+||+|+.||+|+|||+.. ..++..+.
T Consensus 139 -------~~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~~~---------------------~~~~~~~~ 189 (410)
T 1vyh_C 139 -------TGDFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQG---------------------FECIRTMH 189 (410)
T ss_dssp -------TCCCCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTS---------------------SCEEECCC
T ss_pred -------CCcEEEEEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC---------------------CceeEEEc
Confidence 111224567899999999999998 7999999999999999976 46677788
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
+|...|.+++|+|++. +|++|+.|++|++||++++. .. ..+.+|...|.+++|+|++. +|++|+.|++|++||+
T Consensus 190 ~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~-~~---~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 190 GHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGY-CV---KTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVV 263 (410)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCC-EE---EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred CCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc-EE---EEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEEC
Confidence 9999999999999998 99999999999999998743 22 56889999999999999998 9999999999999999
Q ss_pred CCCCCeeEEEecCCCCeEEEEEeCCC-------------------CcEEEEEeCCCCEEEEeCCCCC
Q 018322 307 RVGKSALTSFKAHNADVNVISWNRLA-------------------SCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~~p~~-------------------~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+++ .+...+..|...|++++|+|++ ..+|++|+.||+|++||+++++
T Consensus 264 ~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 264 ATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp TTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred CCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 985 5777889999999999999962 2689999999999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=222.75 Aligned_cols=173 Identities=20% Similarity=0.328 Sum_probs=138.9
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
|.+.|++++|+|++ .+||+|+.|++|+||++....... ....++..+.+|...|++++|+|++.
T Consensus 57 h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~--------------~~~~~~~~~~~h~~~V~~v~~sp~g~- 120 (330)
T 2hes_X 57 HKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRT--------------FEMDLLAIIEGHENEVKGVAWSNDGY- 120 (330)
T ss_dssp CCSCEEEEEECTTS-SEEEEEETTSCEEEEEC---------------------CCCEEEEEEC----CEEEEEECTTSC-
T ss_pred ccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCcc--------------ccceeEEEEcCCCCcEEEEEECCCCC-
Confidence 99999999999998 799999999999999986421000 01345667889999999999999998
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-CeeEEEecCCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNAD 322 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~-~~~~~~~~h~~~ 322 (358)
+|++|+.|++|++||++..+........+.+|...|.+++|+|++. +|++|+.|++|+|||++.+. .++..+.+|...
T Consensus 121 ~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~ 199 (330)
T 2hes_X 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT 199 (330)
T ss_dssp EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc
Confidence 9999999999999999643322112345778999999999999998 99999999999999998642 367778899999
Q ss_pred eEEEEEeCCC-CcEEEEEeCCCCEEEEeCCCC
Q 018322 323 VNVISWNRLA-SCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 323 V~~i~~~p~~-~~~lasgs~Dg~i~iwDlr~~ 353 (358)
|++++|+|++ ..+|++|+.|++|+|||++..
T Consensus 200 v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 200 VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp EEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred EEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 9999999983 178999999999999998653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=217.56 Aligned_cols=209 Identities=20% Similarity=0.246 Sum_probs=167.2
Q ss_pred cceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018322 68 PCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDD 147 (358)
Q Consensus 68 P~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (358)
+..++.|-|++ .+|++|+ .++.|.||++..
T Consensus 11 ~V~~~~~s~~g-----------~~las~s-----~D~~v~iw~~~~---------------------------------- 40 (297)
T 2pm7_B 11 MIHDAVMDYYG-----------KRMATCS-----SDKTIKIFEVEG---------------------------------- 40 (297)
T ss_dssp CEEEEEECTTS-----------SEEEEEE-----TTSCEEEEEBCS----------------------------------
T ss_pred ceEEEEECCCC-----------CEEEEEe-----CCCEEEEEecCC----------------------------------
Confidence 45677777774 4788887 567899998731
Q ss_pred cCCCCCCCeEEEEEecCCCceeEEEEcCC-CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc
Q 018322 148 EEGGSGTPILQLRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (358)
Q Consensus 148 ~~~~~~~~~~~~~~~~H~~~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
....+...+.+|.+.|++++|+|. ...+||+|+.||+|+|||+... ....+..+.
T Consensus 41 -----~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~~ 96 (297)
T 2pm7_B 41 -----ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG-------------------RWSQIAVHA 96 (297)
T ss_dssp -----SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS-------------------CBCCCEEEC
T ss_pred -----CCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC-------------------ceEEEEEee
Confidence 011223466799999999999864 2379999999999999999762 124566788
Q ss_pred CCCCCeEEEEeCCC--CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC------------CCEE
Q 018322 227 GHKDEGYAIDWNPI--TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE------------PDVF 292 (358)
Q Consensus 227 ~h~~~v~~l~~s~~--~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~------------~~~l 292 (358)
+|...|.+++|+|+ +. +|++|+.|++|++||++...... ...+.+|...|.+++|+|+. ..+|
T Consensus 97 ~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~--~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l 173 (297)
T 2pm7_B 97 VHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKF 173 (297)
T ss_dssp CCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBC--CEEEECCSSCEEEEEECCCC------------CCEE
T ss_pred cCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCcee--eeeeecccCccceEeecCCcccccccCCCCCCcceE
Confidence 99999999999997 65 99999999999999998743321 24567899999999999973 2389
Q ss_pred EEEECCCcEEEEECCCCCC---eeEEEecCCCCeEEEEEeCCC--CcEEEEEeCCCCEEEEeCCCC
Q 018322 293 ASCSVDGHIAIWDTRVGKS---ALTSFKAHNADVNVISWNRLA--SCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 293 as~s~Dg~I~iwD~r~~~~---~~~~~~~h~~~V~~i~~~p~~--~~~lasgs~Dg~i~iwDlr~~ 353 (358)
++|+.|++|+|||++.+.. ....+.+|...|++++|+|++ ..+||+|+.|++|+|||+++.
T Consensus 174 ~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 174 VTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp EEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 9999999999999987542 445678999999999999984 379999999999999999864
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=220.25 Aligned_cols=168 Identities=17% Similarity=0.211 Sum_probs=150.3
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
....+..|...+.+++|+|++ .+||+++.+|.|++|++.. ......+..|...+.+++
T Consensus 114 ~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~---------------------~~~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 114 QIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVES---------------------GKKEYSLDTRGKFILSIA 171 (321)
T ss_dssp EEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTT---------------------CSEEEEEECSSSCEEEEE
T ss_pred EEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCC---------------------CceeEEecCCCceEEEEE
Confidence 345566789999999999999 7999999999999999987 456677888989999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
|+|++. +|++|+.||.|++||++++ ... ..+.+|...|.+++|+|++. +|++|+.|+.|+|||++.+ ..+..+
T Consensus 172 ~spdg~-~lasg~~dg~i~iwd~~~~-~~~---~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~-~~~~~~ 244 (321)
T 3ow8_A 172 YSPDGK-YLASGAIDGIINIFDIATG-KLL---HTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHA-NLAGTL 244 (321)
T ss_dssp ECTTSS-EEEEEETTSCEEEEETTTT-EEE---EEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTC-CEEEEE
T ss_pred ECCCCC-EEEEEcCCCeEEEEECCCC-cEE---EEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCc-ceeEEE
Confidence 999998 9999999999999999874 322 56778999999999999998 9999999999999999985 577788
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+|...|++++|+|++ .+|++|+.||+|+|||+++.+
T Consensus 245 ~~h~~~v~~~~~sp~~-~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 245 SGHASWVLNVAFCPDD-THFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE
T ss_pred cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCE
Confidence 9999999999999999 899999999999999998754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=217.77 Aligned_cols=207 Identities=16% Similarity=0.251 Sum_probs=171.5
Q ss_pred CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (358)
Q Consensus 67 wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
-+..++.|.|+.. .+|+.|+ .++.|.||++..-.
T Consensus 18 ~~V~~l~~~~~~~----------~~l~s~s-----~D~~v~~W~~~~~~------------------------------- 51 (319)
T 3frx_A 18 GWVTSLATSAGQP----------NLLLSAS-----RDKTLISWKLTGDD------------------------------- 51 (319)
T ss_dssp SCEEEEEECSSCT----------TEEEEEE-----TTSEEEEEEEEEET-------------------------------
T ss_pred ceEEEEEccCCCc----------cEEEEec-----CCccEEEecCCCCC-------------------------------
Confidence 4566777877531 3777777 56799999984200
Q ss_pred ccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc
Q 018322 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
. ........+.+|.+.|++++|+|++ .+|++|+.|++|+|||+.. .+.+..+.
T Consensus 52 ~-----~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~---------------------~~~~~~~~ 104 (319)
T 3frx_A 52 Q-----KFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVAT---------------------GETYQRFV 104 (319)
T ss_dssp T-----EEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEE
T ss_pred c-----cccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCC---------------------CCeeEEEc
Confidence 0 0123335677999999999999999 7999999999999999987 56677899
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC-----CEEEEEECCCcE
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-----DVFASCSVDGHI 301 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-----~~las~s~Dg~I 301 (358)
+|...|.+++|+|++. +|++|+.|++|++||++.. . ...+.+|...|.+++|+|... ..|++++.|+.|
T Consensus 105 ~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~--~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i 178 (319)
T 3frx_A 105 GHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQ--C---LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178 (319)
T ss_dssp CCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSC--E---EEEECCCSSCEEEEEECCC------CCEEEEEETTSCE
T ss_pred cCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC--e---EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEE
Confidence 9999999999999998 9999999999999999642 2 246778999999999999542 389999999999
Q ss_pred EEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 302 AIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
++||++.. .....+.+|...|++++|+|++ .+|++|+.||+|+|||+++.+
T Consensus 179 ~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~ 229 (319)
T 3frx_A 179 KAWNLNQF-QIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKK 229 (319)
T ss_dssp EEEETTTT-EEEEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTE
T ss_pred EEEECCcc-hhheeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc
Confidence 99999984 5677788999999999999999 999999999999999998764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=227.46 Aligned_cols=164 Identities=20% Similarity=0.388 Sum_probs=145.9
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
...+.+|...|+++.++|++ .+|++|+.||+|++||+.. ......+.+|...|.+++|
T Consensus 227 ~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~---------------------~~~~~~~~~h~~~v~~~~~ 284 (410)
T 1vyh_C 227 VKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVAT---------------------KECKAELREHRHVVECISW 284 (410)
T ss_dssp EEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEEEEE
T ss_pred EEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCC---------------------CceeeEecCCCceEEEEEE
Confidence 35567899999999999998 7999999999999999987 4667788999999999999
Q ss_pred CCC--------------------CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 238 NPI--------------------TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 238 s~~--------------------~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
+|. +. +|++|+.|++|++||++++ ... ..+.+|...|.+++|+|++. +|++|+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~g~-~l~sgs~D~~i~iwd~~~~-~~~---~~~~~h~~~v~~v~~~~~g~-~l~s~s~ 358 (410)
T 1vyh_C 285 APESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVSTG-MCL---MTLVGHDNWVRGVLFHSGGK-FILSCAD 358 (410)
T ss_dssp CCSCGGGGGGGCCSCC-------CC-EEEEEETTSEEEEEETTTT-EEE---EEEECCSSCEEEEEECSSSS-CEEEEET
T ss_pred cCcccccchhhhccccccccCCCCC-EEEEEeCCCeEEEEECCCC-ceE---EEEECCCCcEEEEEEcCCCC-EEEEEeC
Confidence 996 44 8999999999999999874 322 56788999999999999998 8999999
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
||.|++||++.+ .++..+.+|...|++++|+|++ .+|+||+.||+|+||++|
T Consensus 359 D~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~-~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 359 DKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp TTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSS-SCEEEEETTSEEEEEC--
T ss_pred CCeEEEEECCCC-ceEEEEcCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Confidence 999999999884 5788899999999999999999 899999999999999976
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-27 Score=214.39 Aligned_cols=201 Identities=17% Similarity=0.332 Sum_probs=170.7
Q ss_pred CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (358)
Q Consensus 67 wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
-+..++.|.|++ .+|++|+ .++.|.||++.
T Consensus 24 ~~v~~~~~s~~~-----------~~l~s~~-----~dg~i~iw~~~---------------------------------- 53 (312)
T 4ery_A 24 KAVSSVKFSPNG-----------EWLASSS-----ADKLIKIWGAY---------------------------------- 53 (312)
T ss_dssp SCEEEEEECTTS-----------SEEEEEE-----TTSCEEEEETT----------------------------------
T ss_pred CcEEEEEECCCC-----------CEEEEee-----CCCeEEEEeCC----------------------------------
Confidence 466788888875 4778877 45689999762
Q ss_pred ccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc
Q 018322 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
.......+.+|...|++++|+|++ .+|++++.||.|+|||+.. ...+..+.
T Consensus 54 -------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~---------------------~~~~~~~~ 104 (312)
T 4ery_A 54 -------DGKFEKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSS---------------------GKCLKTLK 104 (312)
T ss_dssp -------TCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCEEEEEE
T ss_pred -------CcccchhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCC---------------------CcEEEEEc
Confidence 222345567899999999999998 7999999999999999987 56778889
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
+|...|.+++|+|++. +|++|+.||.|++||+++... . ..+..|...|.+++|+|++. +|++|+.||.|++||+
T Consensus 105 ~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~-~---~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~ 178 (312)
T 4ery_A 105 GHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKC-L---KTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDT 178 (312)
T ss_dssp CCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCE-E---EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEE-E---EEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEEC
Confidence 9999999999999998 999999999999999987432 2 45778999999999999998 9999999999999999
Q ss_pred CCCCCeeEEE-ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 307 RVGKSALTSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 307 r~~~~~~~~~-~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+++ .++..+ ..+...++.++|+|++ .+|++|+.||.|++||+++.+
T Consensus 179 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 179 ASG-QCLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGK 225 (312)
T ss_dssp TTC-CEEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTE
T ss_pred CCC-ceeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCc
Confidence 985 355444 5567789999999999 899999999999999998764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=221.29 Aligned_cols=213 Identities=19% Similarity=0.277 Sum_probs=165.9
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|.|++ .+|+.|+ .++.|.||++..
T Consensus 61 ~~~v~~~~~sp~g-----------~~l~s~s-----~D~~v~iw~~~~-------------------------------- 92 (345)
T 3fm0_A 61 QRTVRKVAWSPCG-----------NYLASAS-----FDATTCIWKKNQ-------------------------------- 92 (345)
T ss_dssp SSCEEEEEECTTS-----------SEEEEEE-----TTSCEEEEEECC--------------------------------
T ss_pred CCcEEEEEECCCC-----------CEEEEEE-----CCCcEEEEEccC--------------------------------
Confidence 3456788888874 4788887 456899998731
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
........+.+|.+.|++++|+|++ .+||+|+.|++|+|||+.... ....+..+
T Consensus 93 -------~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~------------------~~~~~~~~ 146 (345)
T 3fm0_A 93 -------DDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEED------------------EYECVSVL 146 (345)
T ss_dssp -------C-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTS------------------CEEEEEEE
T ss_pred -------CCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCC------------------CeEEEEEe
Confidence 1223445677899999999999998 799999999999999997621 12345678
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
.+|...|.+++|+|++. +|++|+.|++|++|+++.... . ....+.+|...|.+++|+|++. +|++|+.|++|+|||
T Consensus 147 ~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~-~-~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 147 NSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDW-V-CCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWR 222 (345)
T ss_dssp CCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEE-E-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred cCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCE-E-EEEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEec
Confidence 89999999999999998 999999999999999976321 1 1245778999999999999998 999999999999998
Q ss_pred CCCCCC-------------------------------------------------------------ee-----EEEecC
Q 018322 306 TRVGKS-------------------------------------------------------------AL-----TSFKAH 319 (358)
Q Consensus 306 ~r~~~~-------------------------------------------------------------~~-----~~~~~h 319 (358)
.+.+.. +. ....+|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h 302 (345)
T 3fm0_A 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH 302 (345)
T ss_dssp EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS
T ss_pred cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc
Confidence 632100 00 011368
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
...|++|+|+|+++.+||||+.||+|+||++++.+++
T Consensus 303 ~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 303 SQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred cCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 8899999999998669999999999999999987754
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-27 Score=217.58 Aligned_cols=204 Identities=19% Similarity=0.275 Sum_probs=170.8
Q ss_pred CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (358)
Q Consensus 67 wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
-+..++.|.|++ .+|+.|+ .++.|.||++.
T Consensus 56 ~~v~~~~~s~d~-----------~~l~s~s-----~Dg~v~iWd~~---------------------------------- 85 (340)
T 1got_B 56 AKIYAMHWGTDS-----------RLLLSAS-----QDGKLIIWDSY---------------------------------- 85 (340)
T ss_dssp SCEEEEEECTTS-----------SEEEEEE-----TTTEEEEEETT----------------------------------
T ss_pred CceEEEEECCCC-----------CEEEEEe-----CCCcEEEEECC----------------------------------
Confidence 466788888874 4788887 45699999862
Q ss_pred ccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc
Q 018322 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
..........|.+.|.+++|+|++ .+||+|+.|+.|+||++..... .......+.
T Consensus 86 -------~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~-----------------~~~~~~~~~ 140 (340)
T 1got_B 86 -------TTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREG-----------------NVRVSRELA 140 (340)
T ss_dssp -------TCCEEEEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSB-----------------SCEEEEEEE
T ss_pred -------CCCcceEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCC-----------------cceeEEEec
Confidence 112334556799999999999998 7999999999999999976211 123455688
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
+|...+.++.|++.+ .|++|+.|++|++||+.++ ... ..+.+|...|.+++|+|++. +|++|+.|+.|++||+
T Consensus 141 ~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~-~~~---~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~ 213 (340)
T 1got_B 141 GHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETG-QQT---TTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDV 213 (340)
T ss_dssp CCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTT-EEE---EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEET
T ss_pred CCCccEEEEEECCCC--cEEEEECCCcEEEEECCCC-cEE---EEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEEC
Confidence 999999999999875 6999999999999999874 322 56788999999999999998 9999999999999999
Q ss_pred CCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 307 RVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+++ .++..+.+|...|++++|+|++ .+|++|+.||+|+|||+++.+
T Consensus 214 ~~~-~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~ 259 (340)
T 1got_B 214 REG-MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ 259 (340)
T ss_dssp TTC-SEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE
T ss_pred CCC-eeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCc
Confidence 985 5778889999999999999999 999999999999999998754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=224.05 Aligned_cols=216 Identities=21% Similarity=0.291 Sum_probs=174.3
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|.|++ .+|+.|+ .++.|.||++.
T Consensus 66 ~~~V~~~~~sp~~-----------~~l~s~s-----~D~~v~iWd~~--------------------------------- 96 (380)
T 3iz6_a 66 SGKVYSLDWTPEK-----------NWIVSAS-----QDGRLIVWNAL--------------------------------- 96 (380)
T ss_dssp SSCEEEEEECTTS-----------SCEEEEE-----TTSEEEEEETT---------------------------------
T ss_pred ccEEEEEEEcCCC-----------CEEEEEe-----CCCeEEEEECC---------------------------------
Confidence 4567888898875 4788887 45699999862
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
.......+..|...|.+++|+|++ .+||+|+.|+.|+||++........ .......+
T Consensus 97 --------~~~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~~~~~~~~~~--------------~~~~~~~~ 153 (380)
T 3iz6_a 97 --------TSQKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQADRDG--------------NMPVSRVL 153 (380)
T ss_dssp --------TTEEEEEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEECCCCSSCCC--------------SSTTCCBC
T ss_pred --------CCccceEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEECCCCccccC--------------Cccceeec
Confidence 233445667899999999999999 7999999999999999976321100 12334567
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccC-CCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD-PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~-~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (358)
.+|...+.++.|+|.+..+|++|+.|++|++||+.++...... .....+|...|.+++|++...++|++|+.|++|++|
T Consensus 154 ~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~w 233 (380)
T 3iz6_a 154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233 (380)
T ss_dssp CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEE
T ss_pred cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEE
Confidence 8999999999999987658999999999999999875432111 112257999999999988555599999999999999
Q ss_pred ECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 305 DTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|++....++..+.+|...|++++|+|++ .+|+||+.||+|+|||+++++
T Consensus 234 d~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 234 DLRITSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp ETTTTCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTE
T ss_pred ECCCCCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCc
Confidence 9997566788889999999999999999 999999999999999999754
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-26 Score=215.16 Aligned_cols=209 Identities=23% Similarity=0.277 Sum_probs=172.6
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|.|++ .+|+.|+ .++.|.||+..
T Consensus 64 ~~~V~~~~~s~d~-----------~~l~s~s-----~Dg~v~vWd~~--------------------------------- 94 (354)
T 2pbi_B 64 GNKVLCMDWCKDK-----------RRIVSSS-----QDGKVIVWDSF--------------------------------- 94 (354)
T ss_dssp SSCEEEEEECTTS-----------SEEEEEE-----TTSEEEEEETT---------------------------------
T ss_pred CCeEEEEEECCCC-----------CEEEEEe-----CCCeEEEEECC---------------------------------
Confidence 4467889998875 4788887 56799999762
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
..........|...|.+++|+|++ .++|+|+.|+.|++|++....... .......+
T Consensus 95 --------~~~~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~~~---------------~~~~~~~~ 150 (354)
T 2pbi_B 95 --------TTNKEHAVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKNEN---------------MAAKKKSV 150 (354)
T ss_dssp --------TCCEEEEEECSSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTTCC---------------SGGGCEEE
T ss_pred --------CCCcceEEecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEecccccc---------------ccccceee
Confidence 122334556789999999999999 799999999999999987521110 12345567
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC-CCEEEEEECCCcEEEE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIW 304 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iw 304 (358)
.+|...|.+++|+|++. +|++|+.|++|++||+.++ ... ..+.+|...|.+++|+|.. ..+|++|+.||.|++|
T Consensus 151 ~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~-~~~---~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 151 AMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESG-QLL---QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp EECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTC-CEE---EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred eccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCC-eEE---EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 78999999999999998 9999999999999999874 322 5688999999999999853 2499999999999999
Q ss_pred ECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 305 DTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|++++ .++..+..|...|++++|+|++ .+|++|+.|++|++||+++.+
T Consensus 226 d~~~~-~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~ 273 (354)
T 2pbi_B 226 DMRSG-QCVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADR 273 (354)
T ss_dssp ETTTC-CEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE
T ss_pred ECCCC-cEEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc
Confidence 99985 5788889999999999999999 899999999999999998753
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=211.80 Aligned_cols=220 Identities=19% Similarity=0.251 Sum_probs=171.5
Q ss_pred CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (358)
Q Consensus 67 wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
=+..++.|.|++ .+|++|+ .++.|.||++..-
T Consensus 12 ~~v~~~~~~~~~-----------~~l~~~~-----~dg~i~iw~~~~~-------------------------------- 43 (351)
T 3f3f_A 12 DLVHDVVYDFYG-----------RHVATCS-----SDQHIKVFKLDKD-------------------------------- 43 (351)
T ss_dssp SCEEEEEECSSS-----------SEEEEEE-----TTSEEEEEEECSS--------------------------------
T ss_pred cceeEEEEcCCC-----------CEEEEee-----CCCeEEEEECCCC--------------------------------
Confidence 356788888874 4788887 4569999998410
Q ss_pred ccCCCCCCCeEEEEEecCCCceeEEEEcCC--CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE
Q 018322 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQ--NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (358)
.....+...+.+|.+.|++++|+|. + .+|++++.||.|+|||+......... ....++..
T Consensus 44 -----~~~~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~------------~~~~~~~~ 105 (351)
T 3f3f_A 44 -----TSNWELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECSG------------RRWNKLCT 105 (351)
T ss_dssp -----SCCEEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSS------------CSEEEEEE
T ss_pred -----CCcceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccc------------cCcceeee
Confidence 0123445667789999999999995 5 79999999999999999763211000 01245677
Q ss_pred EcCCCCCeEEEEeCCC--CCCeEEEEeCCCcEEEEecCCCCCccc-----------------------------------
Q 018322 225 FGGHKDEGYAIDWNPI--TTGRLVTGDCNSCIYLWEPASDATWNV----------------------------------- 267 (358)
Q Consensus 225 ~~~h~~~v~~l~~s~~--~~~~l~sgs~dg~I~lwd~~~~~~~~~----------------------------------- 267 (358)
+.+|...|++++|+|+ +. +|++|+.||.|++||+++......
T Consensus 106 ~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 184 (351)
T 3f3f_A 106 LNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK 184 (351)
T ss_dssp ECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCE
T ss_pred ecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcE
Confidence 8899999999999999 77 999999999999999876431100
Q ss_pred ---------------------CCCccccCCCcEEEEEECCCCC---CEEEEEECCCcEEEEECCCCC-------------
Q 018322 268 ---------------------DPNPFIGHSASVEDLQWSPTEP---DVFASCSVDGHIAIWDTRVGK------------- 310 (358)
Q Consensus 268 ---------------------~~~~~~~h~~~V~~v~~sp~~~---~~las~s~Dg~I~iwD~r~~~------------- 310 (358)
....+.+|...|.+++|+|++. .+|++|+.||.|++||++.+.
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 264 (351)
T 3f3f_A 185 LAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSN 264 (351)
T ss_dssp EEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------
T ss_pred EEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccccee
Confidence 0123456899999999999982 399999999999999998631
Q ss_pred --------------------------------CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 311 --------------------------------SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 311 --------------------------------~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.++..+.+|...|++++|+|++ .+|++|+.||.|+|||+.+.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 265 MFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp --------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTS
T ss_pred ccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC-CEEEEecCCCcEEEEecCcCc
Confidence 3455667899999999999999 899999999999999998764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=215.27 Aligned_cols=166 Identities=17% Similarity=0.203 Sum_probs=142.7
Q ss_pred EEEEEecCCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
....+.+|...|+++.|+|.. ..+|++|+.||+|++||+.. ..++..+.+|...|.++
T Consensus 188 ~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~---------------------~~~~~~~~~h~~~v~~v 246 (354)
T 2pbi_B 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS---------------------GQCVQAFETHESDVNSV 246 (354)
T ss_dssp EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEEE
T ss_pred EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC---------------------CcEEEEecCCCCCeEEE
Confidence 445677899999999999853 37999999999999999987 56778899999999999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
+|+|++. +|++|+.|++|++||++...... ......+...+.+++|+|++. +|++|+.|+.|+|||++.+ ..+..
T Consensus 247 ~~~p~~~-~l~s~s~D~~v~lwd~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~~-~~~~~ 321 (354)
T 2pbi_B 247 RYYPSGD-AFASGSDDATCRLYDLRADREVA--IYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLKG-SRVSI 321 (354)
T ss_dssp EECTTSS-EEEEEETTSCEEEEETTTTEEEE--EECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTTC-SEEEE
T ss_pred EEeCCCC-EEEEEeCCCeEEEEECCCCcEEE--EEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCCC-ceEEE
Confidence 9999998 99999999999999998743211 011122345789999999998 9999999999999999885 57778
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
+.+|...|++++|+|++ .+|++|+.||+|+||+
T Consensus 322 l~~h~~~v~~l~~spdg-~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 322 LFGHENRVSTLRVSPDG-TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEC
T ss_pred EECCCCcEEEEEECCCC-CEEEEEcCCCCEEecC
Confidence 88999999999999999 8999999999999996
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=226.69 Aligned_cols=170 Identities=16% Similarity=0.175 Sum_probs=141.7
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE-c--CCCCCeE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-G--GHKDEGY 233 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~h~~~v~ 233 (358)
......+|.+.|++|+|+|.++.+|+||+.||+|+|||+... ....+ . .+...+.
T Consensus 156 ~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~----------------------~~~~~~~~~~~~~~~~ 213 (435)
T 4e54_B 156 TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN----------------------ILRVFASSDTINIWFC 213 (435)
T ss_dssp EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC----------------------EEEEEECCSSCSCCCC
T ss_pred eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC----------------------ceeEEeccCCCCccEE
Confidence 335667899999999999966589999999999999999762 12222 2 2334678
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC--
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-- 311 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-- 311 (358)
+++|+|++. +|++|+.||.|++||++.. . ...+.+|...|.+++|+|++..+|++|+.|+.|+|||++....
T Consensus 214 ~~~~~~~~~-~l~~g~~dg~i~~wd~~~~-~----~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 214 SLDVSASSR-MVVTGDNVGNVILLNMDGK-E----LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287 (435)
T ss_dssp CEEEETTTT-EEEEECSSSBEEEEESSSC-B----CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred EEEECCCCC-EEEEEeCCCcEeeeccCcc-e----eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc
Confidence 999999998 9999999999999998642 2 3567889999999999999988999999999999999998542
Q ss_pred eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 312 ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 312 ~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+....+|...|++++|+|++ .+|++|+.||+|+|||+++++.
T Consensus 288 ~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 288 SFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp CCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSS
T ss_pred eEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCcc
Confidence 223346799999999999999 8999999999999999987653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-26 Score=209.52 Aligned_cols=171 Identities=23% Similarity=0.358 Sum_probs=154.1
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
...+...+.+|.+.|++++|+|++ .+||+++.||.|+||++.. ......+.+|...|.
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~---------------------~~~~~~~~~h~~~v~ 69 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYD---------------------GKFEKTISGHKLGIS 69 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEE
T ss_pred CceeEEEEcccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCC---------------------cccchhhccCCCceE
Confidence 446677889999999999999998 7999999999999999876 456677889999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
+++|+|++. +|++|+.||.|++||+.+.. .. ..+.+|...|.+++|+|++. +|++|+.||.|++||++++ .++
T Consensus 70 ~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~-~~---~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~-~~~ 142 (312)
T 4ery_A 70 DVAWSSDSN-LLVSASDDKTLKIWDVSSGK-CL---KTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTG-KCL 142 (312)
T ss_dssp EEEECTTSS-EEEEEETTSEEEEEETTTCC-EE---EEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC-CEE
T ss_pred EEEEcCCCC-EEEEECCCCEEEEEECCCCc-EE---EEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-EEE
Confidence 999999998 99999999999999998743 22 56788999999999999998 9999999999999999985 577
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+..|...|++++|+|++ .+|++|+.||.|++||+++.+
T Consensus 143 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 143 KTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC
T ss_pred EEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Confidence 7888999999999999999 899999999999999998765
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-27 Score=219.30 Aligned_cols=170 Identities=18% Similarity=0.280 Sum_probs=142.7
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
.+|...|.++.|++.+..+|++|+.||+|+|||+.. ...++..+.+|...|++++|+|++
T Consensus 202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~--------------------~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI--------------------TSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT--------------------TCCCCEEECCCSSCCCEEEECTTS
T ss_pred CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC--------------------CCcceEEECCcCCCeEEEEEecCC
Confidence 479999999999886558999999999999999975 246778899999999999999999
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccC---CCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE--
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVD---PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-- 316 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~---~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-- 316 (358)
. +|++|+.||+|++||++++...... ......+...|.+++|+|++. +|++|+.||.|++||+..+ ..+..+
T Consensus 262 ~-~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~vwd~~~~-~~~~~~~~ 338 (380)
T 3iz6_a 262 Q-RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLA-EMVLNLGT 338 (380)
T ss_dssp S-EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEEEEETTTC-CEEEEECC
T ss_pred C-eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCC-EEEEEECCCCEEEEECCCC-ceEEEEec
Confidence 8 9999999999999999874321110 011122344689999999999 9999999999999999875 455555
Q ss_pred --ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 317 --KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 317 --~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+|...|++++|+|++ .+|+||+.||+|+||++...++
T Consensus 339 ~~~~h~~~v~~l~~s~dg-~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 339 LQNSHEGRISCLGLSSDG-SALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp SCSSCCCCCCEEEECSSS-SEEEEECTTSCEEEEECCSSSS
T ss_pred ccCCCCCceEEEEECCCC-CEEEEeeCCCCEEEEecCCCcc
Confidence 6799999999999999 8999999999999999987654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=218.12 Aligned_cols=180 Identities=21% Similarity=0.327 Sum_probs=152.1
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.+.|++++|+|.+..+|++|+.||.|+||++........ ...+...+.+|...|.+++|+
T Consensus 175 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~~~~h~~~v~~v~~~ 240 (430)
T 2xyi_A 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR--------------VIDAKNIFTGHTAVVEDVAWH 240 (430)
T ss_dssp EEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG--------------EEECSEEECCCSSCEEEEEEC
T ss_pred EEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc--------------eeccceeecCCCCCEeeeEEe
Confidence 456689999999999999866999999999999999987211100 123356778999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|.+..+|++|+.||.|++||+++... ......+..|...|++++|+|++.++|++|+.||.|++||+|....++..+..
T Consensus 241 p~~~~~l~s~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~ 319 (430)
T 2xyi_A 241 LLHESLFGSVADDQKLMIWDTRNNNT-SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 319 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCSCS-SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCC-CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec
Confidence 96555999999999999999987531 11134566899999999999999889999999999999999986678888999
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
|...|++++|+|++..+|++|+.||.|+|||++..
T Consensus 320 h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 320 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 99999999999999778999999999999999874
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-27 Score=214.45 Aligned_cols=210 Identities=21% Similarity=0.278 Sum_probs=168.3
Q ss_pred CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (358)
Q Consensus 67 wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
-+..++.|-|++ .+|++|+ .++.|.||++..
T Consensus 14 ~~V~~v~~s~~g-----------~~lasgs-----~D~~v~lwd~~~--------------------------------- 44 (316)
T 3bg1_A 14 DMIHDAQMDYYG-----------TRLATCS-----SDRSVKIFDVRN--------------------------------- 44 (316)
T ss_dssp CCEEEEEECGGG-----------CEEEEEE-----TTTEEEEEEEET---------------------------------
T ss_pred CeEEEeeEcCCC-----------CEEEEEe-----CCCeEEEEEecC---------------------------------
Confidence 456778887775 4788887 567999999841
Q ss_pred ccCCCCCCCeEEEEEecCCCceeEEEEcCC-CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
....+...+.+|.+.|++++|+|. ...+||+|+.|++|+|||+... .......+
T Consensus 45 ------~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~ 99 (316)
T 3bg1_A 45 ------GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG-------------------TWEKSHEH 99 (316)
T ss_dssp ------TEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS-------------------CCCEEEEE
T ss_pred ------CCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC-------------------cceEEEEc
Confidence 122344567799999999999863 2379999999999999999761 12455678
Q ss_pred cCCCCCeEEEEeCCC--CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC---------------
Q 018322 226 GGHKDEGYAIDWNPI--TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--------------- 288 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~--~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--------------- 288 (358)
.+|...|.+++|+|+ +. +|++|+.|++|++||++....+. ....+.+|...|.+++|+|+.
T Consensus 100 ~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 177 (316)
T 3bg1_A 100 AGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWE-VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPN 177 (316)
T ss_dssp CCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEE-ECCBTTSSSSCBCCCEECCCCCC------CCSCCCC
T ss_pred cCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcc-eeeeeccccCCcceEEEccccCCccccccccccCcc
Confidence 899999999999998 55 89999999999999998743331 124567899999999999973
Q ss_pred -CCEEEEEECCCcEEEEECCCCC--CeeEEEecCCCCeEEEEEeCCC---CcEEEEEeCCCCEEEEeCCC
Q 018322 289 -PDVFASCSVDGHIAIWDTRVGK--SALTSFKAHNADVNVISWNRLA---SCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 289 -~~~las~s~Dg~I~iwD~r~~~--~~~~~~~~h~~~V~~i~~~p~~---~~~lasgs~Dg~i~iwDlr~ 352 (358)
..+|++|+.|++|+|||++... .++..+.+|...|++++|+|++ ..+||+|+.||+|+|||++.
T Consensus 178 ~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 178 YIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred ccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 1389999999999999997642 2555678999999999999985 36899999999999999986
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=209.71 Aligned_cols=172 Identities=19% Similarity=0.363 Sum_probs=145.0
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.+.|++++|+|++ .+||+|+.|++|+|||+... ...++..+.+|...|++++|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~-------------------~~~~~~~l~gH~~~V~~v~~s 62 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGE-------------------THKLIDTLTGHEGPVWRVDWA 62 (297)
T ss_dssp EECCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSS-------------------CBCCCEEECCCSSCEEEEEEC
T ss_pred eeccCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCC-------------------CcEEEEEEccccCCeEEEEec
Confidence 4566899999999999999 79999999999999998751 135678899999999999998
Q ss_pred CC--CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC--CCCEEEEEECCCcEEEEECCCCCC-ee
Q 018322 239 PI--TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT--EPDVFASCSVDGHIAIWDTRVGKS-AL 313 (358)
Q Consensus 239 ~~--~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--~~~~las~s~Dg~I~iwD~r~~~~-~~ 313 (358)
+. +. +|++|+.||+|++||+.++. +. ....+.+|...|.+++|+|+ +. +|++|+.|+.|++||++.... ..
T Consensus 63 ~~~~g~-~l~s~s~D~~v~iWd~~~~~-~~-~~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 63 HPKFGT-ILASCSYDGKVMIWKEENGR-WS-QIAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp CGGGCS-EEEEEETTTEEEEEEBSSSC-BC-CCEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred CCCcCC-EEEEEcCCCEEEEEEcCCCc-eE-EEEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceee
Confidence 64 65 99999999999999997632 11 12446779999999999997 55 999999999999999987532 24
Q ss_pred EEEecCCCCeEEEEEeCCC------------CcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLA------------SCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~------------~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+.+|...|++++|+|++ ..+|++|+.|++|+|||+++.+
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence 5678999999999999973 2699999999999999998754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=231.09 Aligned_cols=173 Identities=21% Similarity=0.324 Sum_probs=150.9
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.....+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.. ...+..+.+|...|+++
T Consensus 421 ~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~---------------------~~~~~~~~~h~~~v~~~ 478 (694)
T 3dm0_A 421 VAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAA---------------------GVSTRRFVGHTKDVLSV 478 (694)
T ss_dssp EEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEE
T ss_pred cccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCC---------------------CcceeEEeCCCCCEEEE
Confidence 4456778999999999999998 7999999999999999987 45667889999999999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC-CEEEEEECCCcEEEEECCCCCCeeE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
+|+|++. +|+||+.|++|++||+..... ........+|...|.+++|+|++. ..|++|+.|++|+|||++.. .+..
T Consensus 479 ~~s~~~~-~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~-~~~~ 555 (694)
T 3dm0_A 479 AFSLDNR-QIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC-KLRS 555 (694)
T ss_dssp EECTTSS-CEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC-CEEE
T ss_pred EEeCCCC-EEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC-cEEE
Confidence 9999998 999999999999999865322 111233467999999999999862 48999999999999999984 5777
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+.+|...|++++|+|++ .+|++|+.||+|+|||+++.+
T Consensus 556 ~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 556 TLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGK 594 (694)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTE
T ss_pred EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc
Confidence 889999999999999999 999999999999999998764
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=226.54 Aligned_cols=239 Identities=10% Similarity=0.046 Sum_probs=172.1
Q ss_pred hcccccCcceeEEEEeccCCCccccCCceEEEEEeec--------------CCCCCCceEEEEEeeccCCccccCCCCCC
Q 018322 61 HAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQ--------------AEKPSWNSIGVFKVSNISGKRRELVPNKP 126 (358)
Q Consensus 61 ~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~--------------~~~~~~n~i~i~~~~~l~~~~~~~~~~~~ 126 (358)
..+.+.++..+++|.|+..+..+. ...+||++|+. ++...++.|.||++..-
T Consensus 128 ~~~~~~~~V~sv~w~p~~~~~~~~--~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~------------ 193 (524)
T 2j04_B 128 FIYNVGGLVTDIAWLNIEENTDIG--KDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTS------------ 193 (524)
T ss_dssp EEEECCC--CCCSCEEECCCCSSC--SSEEEEEEEEEC------------------CEEEEEEEEETT------------
T ss_pred EEEECCCceeEEEecccCCCCccC--cCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCC------------
Confidence 355568899999999985321100 01368888874 33446778999988410
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCC-----CcEEEEEeCCCcEEEEeCCCCccc
Q 018322 127 SNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQN-----PHICASWADTGHVQVWDLRSHLNA 201 (358)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~-----~~~lat~s~dg~V~iwd~~~~~~~ 201 (358)
.....+...+..|.+.|++++|+|.+ ..+||+++.||+|+|||+......
T Consensus 194 -------------------------~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 194 -------------------------TLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp -------------------------TCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred -------------------------CCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence 00122234456688999999999972 369999999999999999763211
Q ss_pred cccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEE
Q 018322 202 LAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~ 281 (358)
.... . ....+...+.+|...|++++|++. . +|++|+.||+|++||++++... ...+.+|...|.+
T Consensus 249 ~~~~--~--------~~~~p~~~l~~h~~~v~sv~~s~~-~-~lasgs~DgtV~lWD~~~~~~~---~~~~~~H~~~V~s 313 (524)
T 2j04_B 249 VHVF--K--------MCEKPSLTLSLADSLITTFDFLSP-T-TVVCGFKNGFVAEFDLTDPEVP---SFYDQVHDSYILS 313 (524)
T ss_dssp SSEE--E--------CCCSCSEEECCTTTCEEEEEESSS-S-EEEEEETTSEEEEEETTBCSSC---SEEEECSSSCEEE
T ss_pred cccc--e--------eecCceEEEEcCCCCEEEEEecCC-C-eEEEEeCCCEEEEEECCCCCCc---eEEeecccccEEE
Confidence 0000 0 013466788999999999999985 3 8999999999999999864322 2457789999999
Q ss_pred E--EECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC--CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 282 L--QWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA--DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 282 v--~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~--~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
| +|+|++..+||||+.|++|+|||++++ .++..+.+|.. .|++++|+|++ ..|++++.|++|+|||++++..
T Consensus 314 v~~~~s~~g~~~laS~S~D~tvklWD~~~~-~~~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~ 389 (524)
T 2j04_B 314 VSTAYSDFEDTVVSTVAVDGYFYIFNPKDI-ATTKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFA 389 (524)
T ss_dssp EEEECCTTSCCEEEEEETTSEEEEECGGGH-HHHCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTC
T ss_pred EEEEcCCCCCeEEEEeccCCeEEEEECCCC-CcccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECccccc
Confidence 9 578877349999999999999999984 45555656653 58899999998 7899999999999999998653
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=212.06 Aligned_cols=177 Identities=18% Similarity=0.273 Sum_probs=152.1
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
...+..++.+|.+.|++++|+|.++.+|+||+.|++|++|++...... ...++..+.+|...|.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------~~~~~~~~~~h~~~v~ 69 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------FGVPVRSFKGHSHIVQ 69 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------EEEEEEEEECCSSCEE
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------ccccceEEeCCcccEE
Confidence 345557788999999999999987789999999999999998652111 1245678899999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
+++|+|++. +|++|+.|++|++||+.++. . ...+.+|...|.+++|+|++. +|++|+.|++|++||++. .++
T Consensus 70 ~~~~s~dg~-~l~s~s~D~~v~~wd~~~~~-~---~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~--~~~ 141 (319)
T 3frx_A 70 DCTLTADGA-YALSASWDKTLRLWDVATGE-T---YQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG--QCL 141 (319)
T ss_dssp EEEECTTSS-EEEEEETTSEEEEEETTTTE-E---EEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS--CEE
T ss_pred EEEECCCCC-EEEEEeCCCEEEEEECCCCC-e---eEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC--CeE
Confidence 999999998 99999999999999998743 2 256889999999999999998 999999999999999985 577
Q ss_pred EEEecCCCCeEEEEEeCCC-----CcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLA-----SCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~-----~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+.+|...|.+++|+|.. ..+|++|+.|+.|++||+++.+
T Consensus 142 ~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~ 187 (319)
T 3frx_A 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187 (319)
T ss_dssp EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE
T ss_pred EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch
Confidence 7888999999999999854 2489999999999999998754
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=212.14 Aligned_cols=214 Identities=15% Similarity=0.179 Sum_probs=161.1
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|.|++ .+|++|+ .++.|.||++..-.
T Consensus 58 ~~~v~~v~~sp~~-----------~~las~s-----~D~~v~iw~~~~~~------------------------------ 91 (330)
T 2hes_X 58 KKAIRSVAWRPHT-----------SLLAAGS-----FDSTVSIWAKEESA------------------------------ 91 (330)
T ss_dssp CSCEEEEEECTTS-----------SEEEEEE-----TTSCEEEEEC----------------------------------
T ss_pred cCCEEEEEECCCC-----------CEEEEEe-----CCCcEEEEEcccCc------------------------------
Confidence 3466788888874 4788887 45689999873100
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
... ........+.+|.+.|++++|+|++ .+||+|+.|++|+|||+..... ...++..+
T Consensus 92 ~~~----~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~-----------------~~~~~~~~ 149 (330)
T 2hes_X 92 DRT----FEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGE-----------------EYECISVL 149 (330)
T ss_dssp -------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCC-----------------CCEEEEEE
T ss_pred Ccc----ccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCC-----------------CeEEEEEe
Confidence 000 0233445677899999999999998 7999999999999999954110 12456678
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC--CCCEEEEEECCCcEEE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT--EPDVFASCSVDGHIAI 303 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--~~~~las~s~Dg~I~i 303 (358)
.+|...|.+++|+|++. +|++|+.|++|++||+...... ....+.+|...|.+++|+|+ +. .|++|+.|++|+|
T Consensus 150 ~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~D~~v~i 225 (330)
T 2hes_X 150 QEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWE--CVAVLNGHEGTVWSSDFDKTEGVF-RLCSGSDDSTVRV 225 (330)
T ss_dssp CCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEE--EEEEECCCSSCEEEEEECCSSSSC-EEEEEETTSCEEE
T ss_pred ccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCee--EEEEccCCCCcEEEEEecCCCCee-EEEEEeCCCeEEE
Confidence 89999999999999998 9999999999999998753211 12567889999999999998 44 8999999999999
Q ss_pred EECCCCC-------CeeEEEec-CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 304 WDTRVGK-------SALTSFKA-HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 304 wD~r~~~-------~~~~~~~~-h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
||++.+. .+...+.. |...|++++|++++ +|++|+.||.|+|||+++.
T Consensus 226 w~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 226 WKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEETT
T ss_pred EEecCCCccccceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcCCC
Confidence 9997532 12333433 89999999999755 7999999999999998654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=220.89 Aligned_cols=210 Identities=12% Similarity=0.169 Sum_probs=162.4
Q ss_pred CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (358)
Q Consensus 67 wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
-|..++.|.|++ .+|++|+ .++.|.||++..
T Consensus 12 ~~v~~~~~s~~g-----------~~l~~~~-----~d~~i~iw~~~~--------------------------------- 42 (377)
T 3dwl_C 12 KPSYEHAFNSQR-----------TEFVTTT-----ATNQVELYEQDG--------------------------------- 42 (377)
T ss_dssp SCCSCCEECSSS-----------SEEECCC-----SSSCBCEEEEET---------------------------------
T ss_pred CcEEEEEECCCC-----------CEEEEec-----CCCEEEEEEccC---------------------------------
Confidence 367788888875 4777776 456899999841
Q ss_pred ccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc
Q 018322 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
..+.....+.+|.+.|++++|+|++ .+|++++.||+|+|||+.... ...+...+.
T Consensus 43 ------~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~------------------~~~~~~~~~ 97 (377)
T 3dwl_C 43 ------NGWKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDG------------------TWKQTLVLL 97 (377)
T ss_dssp ------TEEEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------------------------CCCCEEECC
T ss_pred ------CceEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCC------------------ceeeeeEec
Confidence 0112334556899999999999998 789999999999999998721 024667788
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
+|...|++++|+|++. +|++|+.|+.|++||++....+. ....+.+ |...|.+++|+|++. +|++|+.|+.|++||
T Consensus 98 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd 174 (377)
T 3dwl_C 98 RLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWW-VSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLS 174 (377)
T ss_dssp CCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CC-CCEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEE
T ss_pred ccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccce-eeeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEE
Confidence 9999999999999998 99999999999999998754321 1245566 999999999999998 999999999999999
Q ss_pred CCCC-----------------CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 306 TRVG-----------------KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 306 ~r~~-----------------~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
++.. ..++..+ .|...|++++|+|++ .+|++|+.||.|+|||+++.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 175 AYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp ECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTS
T ss_pred EEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCC
Confidence 8631 1234444 899999999999999 8999999999999999998765
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-27 Score=218.01 Aligned_cols=167 Identities=15% Similarity=0.074 Sum_probs=135.1
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
+.|.+.|++|.|+|++ .++++++.++ +++|+.... .........+|...+.+++|+|++
T Consensus 173 ~~~~~~V~~v~fspdg-~~l~s~s~~~-~~~~~~~~~-------------------~~~~~~~~~~~~~~v~~v~fspdg 231 (365)
T 4h5i_A 173 IETRGEVKDLHFSTDG-KVVAYITGSS-LEVISTVTG-------------------SCIARKTDFDKNWSLSKINFIADD 231 (365)
T ss_dssp EECSSCCCEEEECTTS-SEEEEECSSC-EEEEETTTC-------------------CEEEEECCCCTTEEEEEEEEEETT
T ss_pred eCCCCceEEEEEccCC-ceEEecccee-EEEEEeccC-------------------cceeeeecCCCCCCEEEEEEcCCC
Confidence 4588999999999999 7899988655 555655441 011122345688899999999999
Q ss_pred CCeEEEEeCCC----cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-
Q 018322 242 TGRLVTGDCNS----CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF- 316 (358)
Q Consensus 242 ~~~l~sgs~dg----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~- 316 (358)
. ++++++.++ .+++|++............+.+|...|++++|+|++. +||+|+.|++|+|||++++ +++..+
T Consensus 232 ~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~D~~V~iwd~~~~-~~~~~~~ 308 (365)
T 4h5i_A 232 T-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLASNDNSIALVKLKDL-SMSKIFK 308 (365)
T ss_dssp E-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEETTSCEEEEETTTT-EEEEEET
T ss_pred C-EEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEcCCCEEEEEECCCC-cEEEEec
Confidence 8 999998887 6888998764332222345678999999999999999 9999999999999999985 566665
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.+|...|++|+|+|++ .+|||||.|++|+|||+...
T Consensus 309 ~gH~~~V~~v~fSpdg-~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 309 QAHSFAITEVTISPDS-TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSSSSCEEEEEECTTS-CEEEEEETTSEEEEEECCTT
T ss_pred CcccCCEEEEEECCCC-CEEEEEeCCCeEEEEEcCCC
Confidence 7899999999999999 99999999999999999643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.5e-26 Score=209.68 Aligned_cols=209 Identities=20% Similarity=0.250 Sum_probs=171.3
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|.|++ .+|++|+ .++.|.||++..
T Consensus 11 ~~~v~~~~~s~~~-----------~~l~~~~-----~dg~i~iw~~~~-------------------------------- 42 (379)
T 3jrp_A 11 NELIHDAVLDYYG-----------KRLATCS-----SDKTIKIFEVEG-------------------------------- 42 (379)
T ss_dssp CCCEEEEEECSSS-----------SEEEEEE-----TTSCEEEEEEET--------------------------------
T ss_pred cccEEEEEEcCCC-----------CEEEEEE-----CCCcEEEEecCC--------------------------------
Confidence 3466788888875 4788887 456899999841
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCC--CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQ--NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (358)
........+.+|.+.|++++|++. + .+|++++.||.|+|||+... ....+.
T Consensus 43 -------~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~-------------------~~~~~~ 95 (379)
T 3jrp_A 43 -------ETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENG-------------------RWSQIA 95 (379)
T ss_dssp -------TEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETT-------------------EEEEEE
T ss_pred -------CcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCC-------------------ceeEee
Confidence 133444567789999999999876 5 79999999999999999762 112567
Q ss_pred EEcCCCCCeEEEEeCCC--CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC-------------C
Q 018322 224 KFGGHKDEGYAIDWNPI--TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT-------------E 288 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~--~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-------------~ 288 (358)
.+.+|...|++++|+|+ +. +|++|+.||.|++||++...... ...+.+|...|.+++|+|. +
T Consensus 96 ~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3jrp_A 96 VHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172 (379)
T ss_dssp EECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCC--EEEEECCTTCEEEEEECCCC----------CTT
T ss_pred eecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCcee--eEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence 78889999999999999 76 99999999999999998753322 2346679999999999994 6
Q ss_pred CCEEEEEECCCcEEEEECCCCCC---eeEEEecCCCCeEEEEEeCC---CCcEEEEEeCCCCEEEEeCCCCC
Q 018322 289 PDVFASCSVDGHIAIWDTRVGKS---ALTSFKAHNADVNVISWNRL---ASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 289 ~~~las~s~Dg~I~iwD~r~~~~---~~~~~~~h~~~V~~i~~~p~---~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
. +|++|+.||.|++||++.+.. +...+..|...|++++|+|+ + .+|++|+.||.|+|||+++..
T Consensus 173 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 173 R-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp C-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEEETTSCEEEEEESSTT
T ss_pred C-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC-CeEEEEeCCCEEEEEeCCCCC
Confidence 6 999999999999999987543 34566789999999999999 6 999999999999999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-25 Score=210.90 Aligned_cols=173 Identities=15% Similarity=0.236 Sum_probs=140.3
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.....+.+|.+.|++++|+|++ .+|++++.|++|+|||+.. ......+. +...+.++
T Consensus 156 ~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~---------------------~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 156 KIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRT---------------------GQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEE-CSSCEEEE
T ss_pred cEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCC---------------------CeeEEEEE-cCCCcEEE
Confidence 3445677899999999999999 7899999999999999986 33444443 55689999
Q ss_pred EeCC-CCCCeEEEEeCCCcEEEEecCCCCCccc---CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC-
Q 018322 236 DWNP-ITTGRLVTGDCNSCIYLWEPASDATWNV---DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK- 310 (358)
Q Consensus 236 ~~s~-~~~~~l~sgs~dg~I~lwd~~~~~~~~~---~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~- 310 (358)
+|+| ++. +|++|+.||.|++||++++..... ......+|...|.+++|+|++. +|++|+.|+.|++||++...
T Consensus 213 ~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~d~~v~~wd~~~~~~ 290 (393)
T 1erj_A 213 AVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANN 290 (393)
T ss_dssp EECSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEEC-----
T ss_pred EEECCCCC-EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECCCCCC
Confidence 9999 666 999999999999999987432110 0112357999999999999998 99999999999999998632
Q ss_pred ----------CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 311 ----------SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 311 ----------~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+...+.+|...|.+++|+|++ .+|++|+.||.|++||+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp ----------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCC
T ss_pred cccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEEeCCCeEEEEECCCCe
Confidence 2455678899999999999999 899999999999999998765
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=211.23 Aligned_cols=161 Identities=19% Similarity=0.391 Sum_probs=136.0
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.+...|++++|+|++ .+||+|+.||+|+|||+.. .+.+..+.+|...|++++|+|++.
T Consensus 121 ~~~~~v~~v~~s~dg-~~l~s~~~d~~i~iwd~~~---------------------~~~~~~~~~h~~~v~~~~~~p~~~ 178 (393)
T 1erj_A 121 SSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIEN---------------------RKIVMILQGHEQDIYSLDYFPSGD 178 (393)
T ss_dssp CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEEECTTSS
T ss_pred CCceeEEEEEECCCC-CEEEEEcCCCeEEEEECCC---------------------CcEEEEEccCCCCEEEEEEcCCCC
Confidence 455679999999999 7999999999999999986 466778899999999999999998
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC-CCCCEEEEEECCCcEEEEECCCCCCeeEEE-----
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSVDGHIAIWDTRVGKSALTSF----- 316 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD~r~~~~~~~~~----- 316 (358)
+|++|+.|++|++||++++.. . .. ..+...+.+++|+| ++. +|++|+.||.|++||++++ ..+..+
T Consensus 179 -~l~s~s~d~~v~iwd~~~~~~-~---~~-~~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~ 250 (393)
T 1erj_A 179 -KLVSGSGDRTVRIWDLRTGQC-S---LT-LSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETG-FLVERLDSENE 250 (393)
T ss_dssp -EEEEEETTSEEEEEETTTTEE-E---EE-EECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTC-CEEEEEC----
T ss_pred -EEEEecCCCcEEEEECCCCee-E---EE-EEcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCC-cEEEeeccccc
Confidence 999999999999999987422 2 12 23567899999999 555 9999999999999999985 344444
Q ss_pred --ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 317 --KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 317 --~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+|...|++++|+|++ .+|++|+.||+|++||+++..
T Consensus 251 ~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 251 SGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp --CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC----
T ss_pred CCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCC
Confidence 5789999999999999 999999999999999998643
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=211.04 Aligned_cols=174 Identities=14% Similarity=0.196 Sum_probs=142.4
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
....+.+|.+.|++++|+|++ .+|++++.||+|++||+.. ...+..+.+|...|++++
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~---------------------~~~~~~~~~h~~~v~~~~ 188 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKD---------------------GSNPRTLIGHRATVTDIA 188 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCCCEEEECCSSCEEEEE
T ss_pred eeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCC---------------------CcCceEEcCCCCcEEEEE
Confidence 334446899999999999998 7999999999999999987 466778899999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccC---------------------CCcEEEEEECCCCCCEEEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH---------------------SASVEDLQWSPTEPDVFASC 295 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h---------------------~~~V~~v~~sp~~~~~las~ 295 (358)
|+|++. +|++|+.||.|++||++++.. .........| ...+.+++|+|++. +|++|
T Consensus 189 ~~~~~~-~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~ 265 (420)
T 3vl1_A 189 IIDRGR-NVLSASLDGTIRLWECGTGTT-IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAG 265 (420)
T ss_dssp EETTTT-EEEEEETTSCEEEEETTTTEE-EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEE
T ss_pred EcCCCC-EEEEEcCCCcEEEeECCCCce-eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEE
Confidence 999998 999999999999999987432 2111111123 34455566688888 99999
Q ss_pred ECCCcEEEEECCCCCCeeEEE-ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 296 SVDGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 296 s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
+.||.|++||++++. .+..+ ..|...|++++|+|++..+|++|+.||.|++||+++.+.+
T Consensus 266 ~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 326 (420)
T 3vl1_A 266 HVSGVITVHNVFSKE-QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP 326 (420)
T ss_dssp ETTSCEEEEETTTCC-EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC
T ss_pred cCCCeEEEEECCCCc-eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc
Confidence 999999999999864 44444 5688999999999999449999999999999999987654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=221.26 Aligned_cols=159 Identities=21% Similarity=0.358 Sum_probs=142.7
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
...+.+|.+.|++++|+|++ .+||+++.|++|++||+.. +.+..+.+|...|++++|
T Consensus 419 ~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~----------------------~~~~~~~~~~~~v~~~~~ 475 (577)
T 2ymu_A 419 LQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNG----------------------QLLQTLTGHSSSVRGVAF 475 (577)
T ss_dssp EEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTS----------------------CEEEEEECCSSCEEEEEE
T ss_pred EEEecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCC----------------------CEEEEEcCCCCCEEEEEE
Confidence 35667899999999999998 7999999999999999754 556778899999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
+|++. +|++|+.|+.|++|+.. +... ..+.+|...|++|+|+|++. +||+++.||.|+|||.. ..++..+.
T Consensus 476 spd~~-~las~~~d~~i~iw~~~--~~~~---~~~~~h~~~v~~l~~s~dg~-~l~s~~~dg~v~lwd~~--~~~~~~~~ 546 (577)
T 2ymu_A 476 SPDGQ-TIASASDDKTVKLWNRN--GQLL---QTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRN--GQLLQTLT 546 (577)
T ss_dssp CTTSC-EEEEEETTSEEEEEETT--SCEE---EEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTT--SCEEEEEE
T ss_pred cCCCC-EEEEEeCCCEEEEEcCC--CCEE---EEEeCCCCCEEEEEEcCCCC-EEEEEECcCEEEEEeCC--CCEEEEEc
Confidence 99998 99999999999999963 3322 56889999999999999998 89999999999999964 35788899
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
+|...|++++|+|++ .+|+|++.|++|++||
T Consensus 547 ~h~~~v~~~~fs~dg-~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 547 GHSSSVWGVAFSPDG-QTIASASSDKTVKLWN 577 (577)
T ss_dssp CCSSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEEcCCC-CEEEEEeCCCEEEEeC
Confidence 999999999999999 8999999999999997
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=206.18 Aligned_cols=211 Identities=14% Similarity=0.166 Sum_probs=169.6
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-|..++.|.|++ .+|++|+ .++.|.||++..
T Consensus 8 ~~~i~~~~~s~~~-----------~~l~~~~-----~d~~v~i~~~~~-------------------------------- 39 (372)
T 1k8k_C 8 VEPISCHAWNKDR-----------TQIAICP-----NNHEVHIYEKSG-------------------------------- 39 (372)
T ss_dssp SSCCCEEEECTTS-----------SEEEEEC-----SSSEEEEEEEET--------------------------------
T ss_pred CCCeEEEEECCCC-----------CEEEEEe-----CCCEEEEEeCCC--------------------------------
Confidence 3467788888875 4777776 357999998841
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
........+.+|.+.|++++|+|++ .+|++++.||.|++||+.... ..+...+
T Consensus 40 -------~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~-------------------~~~~~~~ 92 (372)
T 1k8k_C 40 -------NKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRT-------------------WKPTLVI 92 (372)
T ss_dssp -------TEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTE-------------------EEEEEEC
T ss_pred -------CcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCCe-------------------eeeeEEe
Confidence 0112445666899999999999988 799999999999999996521 1223445
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
..|...+.+++|+|++. +|++|+.||.|++||+.....+........+|...|.+++|+|++. +|++++.||.|++||
T Consensus 93 ~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d 170 (372)
T 1k8k_C 93 LRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFS 170 (372)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred ecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEE
Confidence 67889999999999998 9999999999999999875432211233456899999999999988 999999999999999
Q ss_pred CCC-----------------CCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 306 TRV-----------------GKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 306 ~r~-----------------~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
++. ...++..+..|...|++++|+|++ .+|++|+.||.|++||+++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 171 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKM 235 (372)
T ss_dssp CCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTT
T ss_pred cccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc
Confidence 752 134667778899999999999999 899999999999999998765
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=222.76 Aligned_cols=167 Identities=18% Similarity=0.257 Sum_probs=144.1
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.+.|++++|+|++ .+||+|+.||+|+|||+... .......+.+|...|.+++|+
T Consensus 53 ~~~~~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~-------------------~~~~~~~~~~~~~~v~~v~fs 112 (611)
T 1nr0_A 53 EIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQT-------------------THILKTTIPVFSGPVKDISWD 112 (611)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSST-------------------TCCEEEEEECSSSCEEEEEEC
T ss_pred eEecCCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCCC-------------------cceeeEeecccCCceEEEEEC
Confidence 4567899999999999999 89999999999999998641 123345788999999999999
Q ss_pred CCCCCeEEEEeCC----CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE
Q 018322 239 PITTGRLVTGDCN----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 239 ~~~~~~l~sgs~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
|++. +|++++.+ +.|++||... . ...+.+|...|++++|+|++...|++|+.|++|++||.+.. .+..
T Consensus 113 ~dg~-~l~~~~~~~~~~~~v~~wd~~~---~---~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~~~ 184 (611)
T 1nr0_A 113 SESK-RIAAVGEGRERFGHVFLFDTGT---S---NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKS 184 (611)
T ss_dssp TTSC-EEEEEECCSSCSEEEEETTTCC---B---CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEE
T ss_pred CCCC-EEEEEECCCCceeEEEEeeCCC---C---cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-eEee
Confidence 9998 88888765 4788998532 2 25678999999999999998867999999999999998874 5677
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+.+|...|++++|+|++ .+||+|+.|++|+|||+++++
T Consensus 185 ~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 185 TFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC
T ss_pred eeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCc
Confidence 889999999999999999 899999999999999987654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=221.48 Aligned_cols=201 Identities=21% Similarity=0.346 Sum_probs=163.4
Q ss_pred cceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018322 68 PCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDD 147 (358)
Q Consensus 68 P~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (358)
+..++.|-|++ .+|+.|. .++.|.||++..
T Consensus 61 ~v~~~~~spdg-----------~~lasg~-----~d~~v~lWd~~~---------------------------------- 90 (611)
T 1nr0_A 61 QTTVAKTSPSG-----------YYCASGD-----VHGNVRIWDTTQ---------------------------------- 90 (611)
T ss_dssp CEEEEEECTTS-----------SEEEEEE-----TTSEEEEEESSS----------------------------------
T ss_pred ceEEEEECCCC-----------cEEEEEe-----CCCCEEEeECCC----------------------------------
Confidence 45566777764 5888888 456899998731
Q ss_pred cCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCC----CcEEEEeCCCCccccccccccccCCCCCCCCCCCcE
Q 018322 148 EEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADT----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (358)
Q Consensus 148 ~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (358)
....+...+.+|.+.|++++|+|++ .+||+++.+ +.|++||... ...
T Consensus 91 -----~~~~~~~~~~~~~~~v~~v~fs~dg-~~l~~~~~~~~~~~~v~~wd~~~-----------------------~~~ 141 (611)
T 1nr0_A 91 -----TTHILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDTGT-----------------------SNG 141 (611)
T ss_dssp -----TTCCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTTCC-----------------------BCB
T ss_pred -----CcceeeEeecccCCceEEEEECCCC-CEEEEEECCCCceeEEEEeeCCC-----------------------Ccc
Confidence 1333445677899999999999999 577776654 4788888533 334
Q ss_pred EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
.+.+|...|++++|+|++..+|++|+.|++|++||.... .. ...+.+|...|.+++|+|++. +||+|+.|++|+|
T Consensus 142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~---~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~l 216 (611)
T 1nr0_A 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KF---KSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVL 216 (611)
T ss_dssp CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EE---EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-eE---eeeeccccCceEEEEECCCCC-EEEEEECCCcEEE
Confidence 578999999999999998646999999999999998652 22 256788999999999999998 9999999999999
Q ss_pred EECCCCCCeeEEEe-------cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 304 WDTRVGKSALTSFK-------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 304 wD~r~~~~~~~~~~-------~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
||++++ .++..+. +|...|++++|+|++ .+|+||+.|++|+|||+++++
T Consensus 217 wd~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 217 YNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp EETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred EECCCC-cEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCc
Confidence 999885 4555553 799999999999999 999999999999999998754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=218.48 Aligned_cols=172 Identities=15% Similarity=0.200 Sum_probs=142.1
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
...+|...|++|+|+|.++.+||+|+.||+|+|||+... .......+.+|...|++|+|+|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~-------------------~~~~~~~~~gH~~~V~~l~f~p 174 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK-------------------DKPTFIKGIGAGGSITGLKFNP 174 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC-------------------SCCEEECCCSSSCCCCEEEECS
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC-------------------CceeEEEccCCCCCEEEEEEeC
Confidence 456799999999999987789999999999999999762 1233445678999999999998
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
.+..+|+||+.||+|++||++.. ... .......+...+.+++|+|++. +|++|+.||.|++||++. ..+..+.+|
T Consensus 175 ~~~~~l~s~s~D~~v~iwd~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~--~~~~~~~~h 249 (435)
T 4e54_B 175 LNTNQFYASSMEGTTRLQDFKGN-ILR-VFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDG--KELWNLRMH 249 (435)
T ss_dssp SCTTEEEEECSSSCEEEEETTSC-EEE-EEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSS--CBCCCSBCC
T ss_pred CCCCEEEEEeCCCEEEEeeccCC-cee-EEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCc--ceeEEEecc
Confidence 54449999999999999999752 211 0112223455688999999998 999999999999999975 456778899
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
...|++++|+|++..+|++|+.|++|+|||+++.+.
T Consensus 250 ~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~ 285 (435)
T 4e54_B 250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG 285 (435)
T ss_dssp SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS
T ss_pred cceEEeeeecCCCceEEEEecCcceeeEEecccccc
Confidence 999999999999877999999999999999998654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=211.31 Aligned_cols=175 Identities=17% Similarity=0.347 Sum_probs=147.3
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
+.+|.+.|++++|+|.+..+||+|+.||+|+|||+....... ....++..+.+|...|++++|+|+
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~--------------~~~~~~~~~~~h~~~v~~~~~~p~ 142 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL--------------PLREPVITLEGHTKRVGIVAWHPT 142 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS--------------CBCSCSEEEECCSSCEEEEEECSS
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc--------------ccCCceEEecCCCCeEEEEEECcC
Confidence 458999999999999433899999999999999998731100 012677889999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCcc--ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-e
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPF--IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-K 317 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~ 317 (358)
+..+|++|+.||.|++||+.++ ... ..+ .+|...|.+++|+|++. +|++++.||.|++||++++ ..+..+ .
T Consensus 143 ~~~~l~s~~~dg~i~iwd~~~~-~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~~~ 216 (402)
T 2aq5_A 143 AQNVLLSAGCDNVILVWDVGTG-AAV---LTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKG-TVVAEKDR 216 (402)
T ss_dssp BTTEEEEEETTSCEEEEETTTT-EEE---EEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTT-EEEEEEEC
T ss_pred CCCEEEEEcCCCEEEEEECCCC-Ccc---EEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCC-ceeeeecc
Confidence 8549999999999999999874 322 345 67999999999999988 9999999999999999985 466666 6
Q ss_pred cCCCC-eEEEEEeCCCCcEEEEE---eCCCCEEEEeCCCCCCC
Q 018322 318 AHNAD-VNVISWNRLASCLLASG---SDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 318 ~h~~~-V~~i~~~p~~~~~lasg---s~Dg~i~iwDlr~~~~~ 356 (358)
.|... +.++.|+|++ .+|++| +.|+.|++||+++.+.+
T Consensus 217 ~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~ 258 (402)
T 2aq5_A 217 PHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEP 258 (402)
T ss_dssp SSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSC
T ss_pred CCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCC
Confidence 78776 8999999999 899999 78999999999987653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-26 Score=206.95 Aligned_cols=172 Identities=23% Similarity=0.415 Sum_probs=139.2
Q ss_pred EEEecCCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 159 LRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
..+.+|.+.|++++|+|+. ..+||+|+.||+|+|||+..... ......+.+|...+.+++|
T Consensus 97 ~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~------------------~~~~~~~~~h~~~v~~~~~ 158 (316)
T 3bg1_A 97 HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ------------------WEVKKINNAHTIGCNAVSW 158 (316)
T ss_dssp EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC------------------EEECCBTTSSSSCBCCCEE
T ss_pred EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC------------------cceeeeeccccCCcceEEE
Confidence 4567899999999999973 37999999999999999876210 0112345688889999999
Q ss_pred CCCC-----------------CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC---CCEEEEEEC
Q 018322 238 NPIT-----------------TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE---PDVFASCSV 297 (358)
Q Consensus 238 s~~~-----------------~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~---~~~las~s~ 297 (358)
+|.. . +|++|+.|++|++||++..+.+. ....+.+|...|.+++|+|++ ..+||+|+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~-~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWK-EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp CCCCCC------CCSCCCCCCC-BEECCBTTSBCCEEEECTTSCEE-EEECCBCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred ccccCCccccccccccCccccc-eEEEecCCCeEEEEEeCCCCccc-eeeecccCCCceEEEEecCCCCCCCceEEEEcC
Confidence 9973 4 89999999999999997533221 124678899999999999986 238999999
Q ss_pred CCcEEEEECCCCC---CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 298 DGHIAIWDTRVGK---SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 298 Dg~I~iwD~r~~~---~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
||+|+|||++... .....+..|...|++++|+|++ .+||+|+.||+|+||++.
T Consensus 237 D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g-~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 237 DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITA-NILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTT-CCEEEEESSSCEEEEEEC
T ss_pred CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEEC
Confidence 9999999998621 1233456789999999999999 899999999999999976
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-25 Score=205.16 Aligned_cols=205 Identities=16% Similarity=0.121 Sum_probs=163.8
Q ss_pred CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (358)
Q Consensus 67 wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
-+..++.|.|++. .+|++|+ .++.|.||++..
T Consensus 74 ~~v~~~~~~~~~~----------~~l~s~~-----~dg~i~iwd~~~--------------------------------- 105 (383)
T 3ei3_B 74 RRVTSLEWHPTHP----------TTVAVGS-----KGGDIILWDYDV--------------------------------- 105 (383)
T ss_dssp SCEEEEEECSSCT----------TEEEEEE-----BTSCEEEEETTS---------------------------------
T ss_pred CCEEEEEECCCCC----------CEEEEEc-----CCCeEEEEeCCC---------------------------------
Confidence 4456777777641 3778887 356899998731
Q ss_pred ccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc
Q 018322 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
..........+|.+.|++++|+|.+..+|++++.||.|++||+.. ..+..+.
T Consensus 106 ------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------------------~~~~~~~ 157 (383)
T 3ei3_B 106 ------QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG----------------------SVIQVFA 157 (383)
T ss_dssp ------TTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS----------------------CEEEEEE
T ss_pred ------cccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC----------------------CceEEEe
Confidence 123333444579999999999995448999999999999999985 2233343
Q ss_pred ---CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 227 ---GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 227 ---~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
+|...+.+++|+|++. +|++|+.||.|++||++. .. ...+.+|...|.+++|+|++..+|++|+.|+.|++
T Consensus 158 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~--~~---~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 231 (383)
T 3ei3_B 158 KTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDG--HE---IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKL 231 (383)
T ss_dssp CCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTS--CE---EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred ccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCC--CE---EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEE
Confidence 3447899999999998 999999999999999942 22 25677899999999999999889999999999999
Q ss_pred EECCCCC---CeeEEEecCCCCeEEEEEeC-CCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 304 WDTRVGK---SALTSFKAHNADVNVISWNR-LASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 304 wD~r~~~---~~~~~~~~h~~~V~~i~~~p-~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
||+++.. .++..+ .|...|++++|+| ++ .+|++++.||.|++||+++++.
T Consensus 232 wd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 232 WDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp EEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTS
T ss_pred EeCCCCCcccceEEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCcc
Confidence 9999732 234444 7999999999999 88 8999999999999999998754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-25 Score=203.64 Aligned_cols=211 Identities=21% Similarity=0.298 Sum_probs=167.8
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|.|+.. ..+|++|+ .++.|.||++..
T Consensus 55 ~~~v~~~~~~~~~~---------~~~l~s~~-----~dg~v~iwd~~~-------------------------------- 88 (379)
T 3jrp_A 55 EGPVWRVDWAHPKF---------GTILASCS-----YDGKVLIWKEEN-------------------------------- 88 (379)
T ss_dssp SSCEEEEEECCGGG---------CSEEEEEE-----TTSCEEEEEEET--------------------------------
T ss_pred CCcEEEEEeCCCCC---------CCEEEEec-----cCCEEEEEEcCC--------------------------------
Confidence 45677888876621 14777777 456899999841
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCC--CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQ--NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (358)
...........|.+.|++++|+|+ + .+|++++.||.|++||+... ......
T Consensus 89 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~-------------------~~~~~~ 141 (379)
T 3jrp_A 89 -------GRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKEN-------------------GTTSPI 141 (379)
T ss_dssp -------TEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTT-------------------SCCCEE
T ss_pred -------CceeEeeeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCC-------------------CceeeE
Confidence 122244566779999999999998 6 79999999999999999872 123455
Q ss_pred EEcCCCCCeEEEEeCC-------------CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC---
Q 018322 224 KFGGHKDEGYAIDWNP-------------ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT--- 287 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~-------------~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--- 287 (358)
.+.+|...|.+++|+| ++. +|++|+.||.|++||++...........+.+|...|.+++|+|+
T Consensus 142 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 142 IIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp EEECCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred EecCCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC
Confidence 6788999999999999 466 99999999999999998754332223567789999999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCCee--EE--EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 288 EPDVFASCSVDGHIAIWDTRVGKSAL--TS--FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 288 ~~~~las~s~Dg~I~iwD~r~~~~~~--~~--~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+. +|++++.||.|+|||++.+.... .. ...|...|++++|+|++ .+|++++.||.|+||+++.
T Consensus 221 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 221 RS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SE-EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEEEEE
T ss_pred CC-eEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEeCCC
Confidence 56 99999999999999999853221 11 23488899999999999 8999999999999999874
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=196.72 Aligned_cols=194 Identities=16% Similarity=0.282 Sum_probs=142.8
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccc--ccc-----------ccCCCC-------C
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAES--ETI-----------VGQGAP-------Q 215 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~--~~~-----------~~~~~~-------~ 215 (358)
...+...+|...|++++|+|++ .+||+|+.||+|+||++.......... ... ...... .
T Consensus 58 ~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~ 136 (318)
T 4ggc_A 58 LQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDV 136 (318)
T ss_dssp EEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred EEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeec
Confidence 3335566789999999999999 799999999999999998632211000 000 000000 0
Q ss_pred CCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcc-----------------------
Q 018322 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF----------------------- 272 (358)
Q Consensus 216 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~----------------------- 272 (358)
......+..+.+|...+.++.|++.+. +|++|+.||.|++||++++..........
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 215 (318)
T 4ggc_A 137 RVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 215 (318)
T ss_dssp TSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEE
T ss_pred CCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEE
Confidence 022345567889999999999999998 99999999999999997632110000000
Q ss_pred ---------------------ccCCCcEEEEEECCCCCCEEEEE--ECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEe
Q 018322 273 ---------------------IGHSASVEDLQWSPTEPDVFASC--SVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329 (358)
Q Consensus 273 ---------------------~~h~~~V~~v~~sp~~~~~las~--s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~ 329 (358)
..+...+..+.|+|.+. .++++ +.|+.|+|||++++ .++..+.+|...|++|+|+
T Consensus 216 ~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH~~~V~~l~~s 293 (318)
T 4ggc_A 216 GGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMS 293 (318)
T ss_dssp ECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTT-EEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEEC
T ss_pred ecCCCCEEEEEecccccccccccceeeeeeeeeccccc-ceEEEEEcCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEc
Confidence 12345567778888877 44444 37999999999985 5888899999999999999
Q ss_pred CCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 330 RLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 330 p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|++ .+|||||.||+|+|||+..+.
T Consensus 294 pdg-~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 294 PDG-ATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TTS-SCEEEEETTTEEEEECCSCCC
T ss_pred CCC-CEEEEEecCCeEEEEECCCCC
Confidence 999 899999999999999998764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=209.61 Aligned_cols=170 Identities=19% Similarity=0.355 Sum_probs=147.2
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC------CCCeEE
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH------KDEGYA 234 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~ 234 (358)
...|.+.|+++.|+|++..+|++++.||.|++||+.. ..++..+..| ...+.+
T Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---------------------~~~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA---------------------KKEVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT---------------------TEEEEEECCCCCSSCCCCCEEE
T ss_pred ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC---------------------CCcceEEeccccccccCCceEE
Confidence 4579999999999999658999999999999999987 3445555554 789999
Q ss_pred EEeCCCCCCeEEEEeCCC---cEEEEecCCCCCcccCCCccc-cCCCcEEEEEECC-CCCCEEEEEECCCcEEEEECCCC
Q 018322 235 IDWNPITTGRLVTGDCNS---CIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSP-TEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg---~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
++|+|++..+|++|+.++ .|++||+++..... ..+. +|...|.+++|+| ++. +|++++.||.|++||++++
T Consensus 220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~---~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~~ 295 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPL---QTLNQGHQKGILSLDWCHQDEH-LLLSSGRDNTVLLWNPESA 295 (416)
T ss_dssp EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCS---BCCCSCCSSCEEEEEECSSCSS-CEEEEESSSEEEEECSSSC
T ss_pred EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCc---EEeecCccCceeEEEeCCCCCC-eEEEEeCCCCEEEeeCCCC
Confidence 999999855899999998 99999998753332 5566 8999999999999 666 9999999999999999985
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKVR 356 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~~ 356 (358)
.++..+..|...|++++|+|+++.+|++++.||.|+|||+++.+..
T Consensus 296 -~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 296 -EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp -CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred -ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 5788889999999999999998789999999999999999887643
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=218.49 Aligned_cols=164 Identities=13% Similarity=0.186 Sum_probs=139.6
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE--Ee
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI--DW 237 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~ 237 (358)
.+.+|.+.|++++|++.+ .||+|+.||+|+|||+.. ...+...+.+|...|++| +|
T Consensus 261 ~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~--------------------~~~~~~~~~~H~~~V~sv~~~~ 318 (524)
T 2j04_B 261 TLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTD--------------------PEVPSFYDQVHDSYILSVSTAY 318 (524)
T ss_dssp EECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTB--------------------CSSCSEEEECSSSCEEEEEEEC
T ss_pred EEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCC--------------------CCCceEEeecccccEEEEEEEc
Confidence 456899999999999854 899999999999999986 235667788999999999 57
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCC--cEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA--SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~--~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
++++..+||||+.|++|+|||+++.. .. ..+.+|.. .|.+|+|+|++. .|++++.|++|+|||++.+ .++..
T Consensus 319 s~~g~~~laS~S~D~tvklWD~~~~~-~~---~~~~~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~-~~~~~ 392 (524)
T 2j04_B 319 SDFEDTVVSTVAVDGYFYIFNPKDIA-TT---KTTVSRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAA-FAVHP 392 (524)
T ss_dssp CTTSCCEEEEEETTSEEEEECGGGHH-HH---CEEEEECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCT-TCCEE
T ss_pred CCCCCeEEEEeccCCeEEEEECCCCC-cc---cccccccccCcccceEeCCCcC-eEEEeCCCCcEEEEECccc-cccee
Confidence 88772399999999999999998632 22 34556653 588999999988 8999999999999999985 46677
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+.+|...|++|+|+|++ .+|++|+.||+|+|||+..
T Consensus 393 l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 393 LVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCS
T ss_pred eecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechH
Confidence 88999999999999999 8999999999999999753
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.1e-24 Score=197.91 Aligned_cols=211 Identities=18% Similarity=0.221 Sum_probs=167.3
Q ss_pred ccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 65 IGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (358)
Q Consensus 65 ~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (358)
..-+..++.|.|+.. .+|++|+ .++.|.||++.
T Consensus 98 ~~~~v~~~~~~~~~~----------~~l~s~~-----~d~~i~iwd~~-------------------------------- 130 (408)
T 4a11_B 98 HRYSVETVQWYPHDT----------GMFTSSS-----FDKTLKVWDTN-------------------------------- 130 (408)
T ss_dssp CSSCEEEEEECTTCT----------TCEEEEE-----TTSEEEEEETT--------------------------------
T ss_pred CCCcEEEEEEccCCC----------cEEEEEe-----CCCeEEEeeCC--------------------------------
Confidence 456778888888421 3677776 45689999873
Q ss_pred CCccCCCCCCCeEEEEEecCCCceeEEEEcCCCC--cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc
Q 018322 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNP--HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~--~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (358)
.... .....|...+.++.++|.++ .++++++.+|.|++||+.. ...+
T Consensus 131 ---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~---------------------~~~~ 179 (408)
T 4a11_B 131 ---------TLQT-ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS---------------------GSCS 179 (408)
T ss_dssp ---------TTEE-EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS---------------------SCCC
T ss_pred ---------CCcc-ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC---------------------ccee
Confidence 1112 23345889999999999653 4999999999999999986 4667
Q ss_pred EEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcc------------cCCCccccCCCcEEEEEECCCCCC
Q 018322 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN------------VDPNPFIGHSASVEDLQWSPTEPD 290 (358)
Q Consensus 223 ~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~------------~~~~~~~~h~~~V~~v~~sp~~~~ 290 (358)
..+.+|...|.+++|+|++..+|++|+.||.|++||++...... .....+..|...|.+++|+|++.
T Consensus 180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 258 (408)
T 4a11_B 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL- 258 (408)
T ss_dssp EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-
T ss_pred eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-
Confidence 88889999999999999987458999999999999998743211 11223367899999999999998
Q ss_pred EEEEEECCCcEEEEECCCCC----------------------------------------------CeeEEEecCCCCeE
Q 018322 291 VFASCSVDGHIAIWDTRVGK----------------------------------------------SALTSFKAHNADVN 324 (358)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~----------------------------------------------~~~~~~~~h~~~V~ 324 (358)
+|++++.||.|++||++++. .++..+.+|...|+
T Consensus 259 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~ 338 (408)
T 4a11_B 259 HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVD 338 (408)
T ss_dssp EEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEE
Confidence 99999999999999998642 23445677999999
Q ss_pred EEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 325 VISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+++|+|++ .+|++|+.||.|++||+++.+.
T Consensus 339 ~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 339 CCVFQSNF-QELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EEEEETTT-TEEEEEETTSCEEEEEECC---
T ss_pred EEEEcCCC-CEEEEECCCCeEEEEeCCCCCc
Confidence 99999999 9999999999999999998754
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=206.73 Aligned_cols=239 Identities=13% Similarity=0.156 Sum_probs=166.8
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|-|++ .+|++|+ .++.|.||++.........
T Consensus 28 ~~~V~~v~~s~~g-----------~~la~g~-----~dg~v~iw~~~~~~~~~~~------------------------- 66 (447)
T 3dw8_B 28 ADIISTVEFNHSG-----------ELLATGD-----KGGRVVIFQQEQENKIQSH------------------------- 66 (447)
T ss_dssp GGSEEEEEECSSS-----------SEEEEEE-----TTSEEEEEEECC-----CC-------------------------
T ss_pred cCcEEEEEECCCC-----------CEEEEEc-----CCCeEEEEEecCCCCCCcc-------------------------
Confidence 3456788898875 4888887 4569999998522110000
Q ss_pred CccCCCCCCCeEEEEEecCC------------CceeEEEEcCCCC-cEEEEEeCCCcEEEEeCCCCccccccccccccCC
Q 018322 146 DDEEGGSGTPILQLRKVAHQ------------GCVNRIRAMTQNP-HICASWADTGHVQVWDLRSHLNALAESETIVGQG 212 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~------------~~V~~i~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~ 212 (358)
.. ....+...+.+|. +.|++++|+|++. .+|++++.||+|+||++................+
T Consensus 67 --~~---~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g 141 (447)
T 3dw8_B 67 --SR---GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDG 141 (447)
T ss_dssp --CC---CCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC----
T ss_pred --cc---cceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccc
Confidence 00 1233456677898 8899999999863 5889999999999999875221100000000000
Q ss_pred ----CCCCC--------------CCCCcEE-EcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCccc----CC
Q 018322 213 ----APQVS--------------NQSPLVK-FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV----DP 269 (358)
Q Consensus 213 ----~~~~~--------------~~~~~~~-~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~----~~ 269 (358)
..... ...+... ..+|...|++++|+|++. +|++| .||.|++||++..+.... ..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~ 219 (447)
T 3dw8_B 142 RYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKP 219 (447)
T ss_dssp ----CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCC
T ss_pred cccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeeccc
Confidence 00000 0011123 368999999999999998 99998 799999999984332211 11
Q ss_pred CccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC---eeEEEecCCC------------CeEEEEEeCCCCc
Q 018322 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS---ALTSFKAHNA------------DVNVISWNRLASC 334 (358)
Q Consensus 270 ~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~---~~~~~~~h~~------------~V~~i~~~p~~~~ 334 (358)
..+.+|...|.+++|+|++..+|++|+.||.|++||++++.. .+..+..|.. .|++++|+|++ .
T Consensus 220 ~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~ 298 (447)
T 3dw8_B 220 ANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-R 298 (447)
T ss_dssp SSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-S
T ss_pred ccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-C
Confidence 246789999999999999844999999999999999998542 1567777775 89999999999 8
Q ss_pred EEEEEeCCCCEEEEeCCCCC
Q 018322 335 LLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 335 ~lasgs~Dg~i~iwDlr~~~ 354 (358)
+|++|+. |.|+|||+++..
T Consensus 299 ~l~~~~~-~~v~iwd~~~~~ 317 (447)
T 3dw8_B 299 YMMTRDY-LSVKVWDLNMEN 317 (447)
T ss_dssp EEEEEES-SEEEEEETTCCS
T ss_pred EEEEeeC-CeEEEEeCCCCc
Confidence 9999999 999999999733
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-25 Score=201.82 Aligned_cols=176 Identities=18% Similarity=0.275 Sum_probs=144.2
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.+.|++++|+|++ .+||+|+.||.|+|||+..... .......+.+|...|++++|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~ 66 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTS-----------------NWELSDSWRAHDSSIVAIDWA 66 (351)
T ss_dssp CEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSC-----------------CEEEEEEEECCSSCEEEEEEC
T ss_pred ccCcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCC-----------------cceecceeccCCCcEEEEEEc
Confidence 4456899999999999988 7999999999999999986211 113556778999999999999
Q ss_pred CC--CCCeEEEEeCCCcEEEEecCCCCCcc-----cCCCccccCCCcEEEEEECCC--CCCEEEEEECCCcEEEEECCCC
Q 018322 239 PI--TTGRLVTGDCNSCIYLWEPASDATWN-----VDPNPFIGHSASVEDLQWSPT--EPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 239 ~~--~~~~l~sgs~dg~I~lwd~~~~~~~~-----~~~~~~~~h~~~V~~v~~sp~--~~~~las~s~Dg~I~iwD~r~~ 309 (358)
|. +. +|++|+.||.|++||++.+.... .....+.+|...|.+++|+|+ +. +|++++.||.|++||++.+
T Consensus 67 ~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 144 (351)
T 3f3f_A 67 SPEYGR-IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEP 144 (351)
T ss_dssp CGGGCS-EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSST
T ss_pred CCCCCC-EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCCh
Confidence 94 66 99999999999999998743211 112456789999999999999 77 9999999999999998764
Q ss_pred CC-----------------------------------------------------------eeEEEecCCCCeEEEEEeC
Q 018322 310 KS-----------------------------------------------------------ALTSFKAHNADVNVISWNR 330 (358)
Q Consensus 310 ~~-----------------------------------------------------------~~~~~~~h~~~V~~i~~~p 330 (358)
.. .+..+.+|...|++++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p 224 (351)
T 3f3f_A 145 SDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAP 224 (351)
T ss_dssp TCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECC
T ss_pred HHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECC
Confidence 21 1334467899999999999
Q ss_pred CCC---cEEEEEeCCCCEEEEeCCCCC
Q 018322 331 LAS---CLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 331 ~~~---~~lasgs~Dg~i~iwDlr~~~ 354 (358)
++. .+|++|+.||.|++||++...
T Consensus 225 ~~~~~~~~l~s~~~dg~i~iwd~~~~~ 251 (351)
T 3f3f_A 225 SIGRWYQLIATGCKDGRIRIFKITEKL 251 (351)
T ss_dssp CSSCSSEEEEEEETTSCEEEEEEEECC
T ss_pred CCCCcceEEEEEcCCCeEEEEeCCCCc
Confidence 974 699999999999999998754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=208.62 Aligned_cols=225 Identities=14% Similarity=0.275 Sum_probs=172.0
Q ss_pred hhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCC
Q 018322 60 LHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSD 139 (358)
Q Consensus 60 ~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (358)
+..+...-+..++.|.|++ .+|++|+ .++.|.||++....
T Consensus 61 ~~~~~~~~~v~~~~~s~~~-----------~~l~~~~-----~dg~v~vw~~~~~~------------------------ 100 (416)
T 2pm9_A 61 IASLQVDSKFNDLDWSHNN-----------KIIAGAL-----DNGSLELYSTNEAN------------------------ 100 (416)
T ss_dssp SCCCCCSSCEEEEEECSSS-----------SCEEEEE-----SSSCEEEECCSSTT------------------------
T ss_pred EEEEecCCceEEEEECCCC-----------CeEEEEc-----cCCeEEEeeccccc------------------------
Confidence 3344455677889998874 4777777 35689999873100
Q ss_pred CCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCC
Q 018322 140 SDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ 219 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (358)
........+.+|.+.|++++|+|++..+|++++.||.|++||+.......... ..
T Consensus 101 -------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------~~ 155 (416)
T 2pm9_A 101 -------------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY------------TP 155 (416)
T ss_dssp -------------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC------------CC
T ss_pred -------------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc------------cc
Confidence 01224456778999999999999844899999999999999998732100000 00
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccc------cCCCcEEEEEECCCCCCEEE
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFI------GHSASVEDLQWSPTEPDVFA 293 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~------~h~~~V~~v~~sp~~~~~la 293 (358)
.....+.+|...+++++|+|++..+|++|+.||.|++||+++... . ..+. +|...|.+++|+|++..+|+
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 231 (416)
T 2pm9_A 156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-V---IHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231 (416)
T ss_dssp BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-E---EEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-c---eEEeccccccccCCceEEEEECCCCCCEEE
Confidence 111234678899999999999444999999999999999987432 2 2233 33789999999999866999
Q ss_pred EEECCC---cEEEEECCCCCCeeEEEe-cCCCCeEEEEEeC-CCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 294 SCSVDG---HIAIWDTRVGKSALTSFK-AHNADVNVISWNR-LASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 294 s~s~Dg---~I~iwD~r~~~~~~~~~~-~h~~~V~~i~~~p-~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+++.|+ .|++||++.+..++..+. +|...|++++|+| ++ .+|++|+.||.|++||+++.+
T Consensus 232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~ 296 (416)
T 2pm9_A 232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAE 296 (416)
T ss_dssp EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCC
T ss_pred EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCc
Confidence 999999 999999998656777777 8999999999999 66 999999999999999998765
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-24 Score=196.98 Aligned_cols=202 Identities=17% Similarity=0.246 Sum_probs=156.2
Q ss_pred CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (358)
Q Consensus 67 wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
-+..++.|.|++ .+++.|. .++.|.||++.
T Consensus 77 ~~V~~~~~~~~~-----------~~l~s~s-----~D~~v~lwd~~---------------------------------- 106 (343)
T 2xzm_R 77 HFVSDLALSQEN-----------CFAISSS-----WDKTLRLWDLR---------------------------------- 106 (343)
T ss_dssp SCEEEEEECSST-----------TEEEEEE-----TTSEEEEEETT----------------------------------
T ss_pred CceEEEEECCCC-----------CEEEEEc-----CCCcEEEEECC----------------------------------
Confidence 456677787764 4677776 56799999873
Q ss_pred ccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc
Q 018322 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
.......+.+|.+.|++++|+|++ .+|++++.|++|+|||+..... .......
T Consensus 107 -------~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~-------------------~~~~~~~ 159 (343)
T 2xzm_R 107 -------TGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECK-------------------FSSAEKE 159 (343)
T ss_dssp -------SSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEE-------------------EECCTTT
T ss_pred -------CCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCce-------------------eeeeccc
Confidence 222345677899999999999998 7899999999999999874110 0001123
Q ss_pred CCCCCeEEEEeCCCCC---------CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 227 GHKDEGYAIDWNPITT---------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~---------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
+|...+.+++|+|.+. .+|++|+.||.|++||... .. ...+.+|...|.+++|+|++. +|++|+.
T Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~---~~~~~~h~~~v~~~~~s~~g~-~l~sgs~ 233 (343)
T 2xzm_R 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QI---RYTFKAHESNVNHLSISPNGK-YIATGGK 233 (343)
T ss_dssp SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EE---EEEEECCSSCEEEEEECTTSS-EEEEEET
T ss_pred CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ce---eEEEcCccccceEEEECCCCC-EEEEEcC
Confidence 6888999999999872 2899999999999999532 21 245778999999999999998 9999999
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
||.|+|||++....+...+ .+...|++++|+|++ .+|++| .|+.|++||+.+.+
T Consensus 234 dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-~~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 234 DKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKL-QWVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp TCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSS-CEEEEE-ESSCEEEEESSSCC
T ss_pred CCeEEEEECCCCcccceee-cCCCcEEEEEECCCC-CEEEEE-CCCCEEEEEeCCCC
Confidence 9999999996544444444 355679999999998 777655 57889999997654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-24 Score=193.60 Aligned_cols=203 Identities=16% Similarity=0.251 Sum_probs=168.1
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|.|++ .+|++|+ .++.|.+|++..
T Consensus 97 ~~~v~~~~~~~~~-----------~~l~~~~-----~d~~i~~~d~~~-------------------------------- 128 (337)
T 1gxr_A 97 DNYIRSCKLLPDG-----------CTLIVGG-----EASTLSIWDLAA-------------------------------- 128 (337)
T ss_dssp TSBEEEEEECTTS-----------SEEEEEE-----SSSEEEEEECCC--------------------------------
T ss_pred CCcEEEEEEcCCC-----------CEEEEEc-----CCCcEEEEECCC--------------------------------
Confidence 3455677777764 4677776 456899998731
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
..+........|.+.|+++.|+|++ .++++++.+|.|++||+.. ..++..+
T Consensus 129 -------~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~---------------------~~~~~~~ 179 (337)
T 1gxr_A 129 -------PTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHN---------------------QTLVRQF 179 (337)
T ss_dssp -------C--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEE
T ss_pred -------CCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCC---------------------Cceeeee
Confidence 1334456677899999999999988 7999999999999999987 4667788
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
.+|...+.+++|+|++. +|++++.||.|++||+++... . ....|...+.+++|+|++. +|++++.++.|++||
T Consensus 180 ~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~-~----~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~i~~~~ 252 (337)
T 1gxr_A 180 QGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQ-L----QQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLH 252 (337)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE-E----EEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEE
T ss_pred ecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCce-E----eeecCCCceEEEEECCCCC-EEEEEcCCCcEEEEE
Confidence 88999999999999997 999999999999999987432 1 1234778899999999998 999999999999999
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
++.+. ...+..|...|++++|+|++ .+|++++.||.|++||+++.+.
T Consensus 253 ~~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 253 VNKPD--KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp TTSSC--EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE
T ss_pred CCCCC--eEEEcCCccceeEEEECCCC-CEEEEecCCCcEEEEECCCCeE
Confidence 99843 45678899999999999999 8999999999999999987653
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-24 Score=201.99 Aligned_cols=166 Identities=23% Similarity=0.342 Sum_probs=146.0
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
.....|.+.|++++|+|++ .+|++|+.||.|+|||+.. ...+..+.+|...|.+++|+
T Consensus 128 ~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~---------------------~~~~~~~~~~~~~v~~~~~~ 185 (401)
T 4aez_A 128 LAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVES---------------------QTKLRTMAGHQARVGCLSWN 185 (401)
T ss_dssp EEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEEEEEE
T ss_pred eeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcC---------------------CeEEEEecCCCCceEEEEEC
Confidence 3444589999999999988 7999999999999999986 56778888999999999994
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
+ . +|++|+.||.|++||++...... ..+.+|...|.+++|+|++. +|++|+.||.|++||++++ .++..+..
T Consensus 186 ~--~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~-~~~~~~~~ 257 (401)
T 4aez_A 186 R--H-VLSSGSRSGAIHHHDVRIANHQI---GTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSS-IPKFTKTN 257 (401)
T ss_dssp T--T-EEEEEETTSEEEEEETTSSSCEE---EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCS-SEEEEECC
T ss_pred C--C-EEEEEcCCCCEEEEecccCccee---eEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCC-CccEEecC
Confidence 3 4 99999999999999998544433 56788999999999999988 9999999999999999984 57778889
Q ss_pred CCCCeEEEEEeCCCCcEEEEEe--CCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGS--DDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs--~Dg~i~iwDlr~~~ 354 (358)
|...|.+++|+|++..++++|+ .||.|++||+++.+
T Consensus 258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 9999999999998878999976 79999999998765
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-25 Score=207.40 Aligned_cols=219 Identities=11% Similarity=0.137 Sum_probs=160.4
Q ss_pred ccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 65 IGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (358)
Q Consensus 65 ~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (358)
..-+..++.|.|++ .+|++|+ .++.|.||++..
T Consensus 138 h~~~v~~~~~~~~~-----------~~l~s~s-----~d~~i~iwd~~~------------------------------- 170 (420)
T 3vl1_A 138 HVSEITKLKFFPSG-----------EALISSS-----QDMQLKIWSVKD------------------------------- 170 (420)
T ss_dssp SSSCEEEEEECTTS-----------SEEEEEE-----TTSEEEEEETTT-------------------------------
T ss_pred ccCccEEEEECCCC-----------CEEEEEe-----CCCeEEEEeCCC-------------------------------
Confidence 34566677777764 4777777 456899998731
Q ss_pred CCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE-
Q 018322 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV- 223 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (358)
.... ..+.+|.+.|++++|+|++ .+|++++.||+|++||+.............. ....+.
T Consensus 171 --------~~~~--~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--------~~~~v~~ 231 (420)
T 3vl1_A 171 --------GSNP--RTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKEN--------PHDGVNS 231 (420)
T ss_dssp --------CCCC--EEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTB--------TTCCEEE
T ss_pred --------CcCc--eEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCC--------CCCCccE
Confidence 0111 3456899999999999998 7999999999999999986311100000000 000000
Q ss_pred ----------EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEE
Q 018322 224 ----------KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFA 293 (358)
Q Consensus 224 ----------~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~la 293 (358)
....|...+.+++|+|++. +|++|+.||.|++||+++..... .....|...|.+++|+|++..+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~ 307 (420)
T 3vl1_A 232 IALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKEQTI---QLPSKFTCSCNSLTVDGNNANYIY 307 (420)
T ss_dssp EEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCCEEE---EECCTTSSCEEEEEECSSCTTEEE
T ss_pred EEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCceeE---EcccccCCCceeEEEeCCCCCEEE
Confidence 0112345677778889987 99999999999999998754322 233468899999999999987999
Q ss_pred EEECCCcEEEEECCCCCCeeEEEec-CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 294 SCSVDGHIAIWDTRVGKSALTSFKA-HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 294 s~s~Dg~I~iwD~r~~~~~~~~~~~-h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+|+.||.|++||++++..++..+.. |...|+++.|. ++ .+|++|+.||.|++||++....
T Consensus 308 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 308 AGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AG-ALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp EEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TT-EEEEEETTTEEEEEEEECCTTC
T ss_pred EEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CC-CEEEEecCCccEEEEeccCCCC
Confidence 9999999999999987666777766 67788888665 56 7999999999999999987543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-24 Score=196.61 Aligned_cols=206 Identities=14% Similarity=0.176 Sum_probs=169.9
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.=+..++.|.|++ .+|++|+ .++.|.||++.
T Consensus 32 ~~~v~~~~~s~~~-----------~~l~~~~-----~dg~i~vwd~~--------------------------------- 62 (369)
T 3zwl_B 32 ERPLTQVKYNKEG-----------DLLFSCS-----KDSSASVWYSL--------------------------------- 62 (369)
T ss_dssp SSCEEEEEECTTS-----------CEEEEEE-----SSSCEEEEETT---------------------------------
T ss_pred eceEEEEEEcCCC-----------CEEEEEe-----CCCEEEEEeCC---------------------------------
Confidence 4567788898875 4778877 45689999862
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
.......+.+|.+.|++++|+|++ .+|++++.||.|++||+.. ...+..+
T Consensus 63 --------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~---------------------~~~~~~~ 112 (369)
T 3zwl_B 63 --------NGERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSN---------------------GQCVATW 112 (369)
T ss_dssp --------TCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTT---------------------CCEEEEE
T ss_pred --------CchhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEe
Confidence 222335667899999999999988 7999999999999999987 4556666
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCC-----CcEEEEecCCCCCcc-------cCCCccccCCC--cEEEEEECCCCCCE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCN-----SCIYLWEPASDATWN-------VDPNPFIGHSA--SVEDLQWSPTEPDV 291 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~d-----g~I~lwd~~~~~~~~-------~~~~~~~~h~~--~V~~v~~sp~~~~~ 291 (358)
. |...+.+++|+|++. +|++++.+ |.|++||+....... .....+..|.. .+.+++|+|++. +
T Consensus 113 ~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 189 (369)
T 3zwl_B 113 K-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-Y 189 (369)
T ss_dssp E-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-E
T ss_pred e-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-E
Confidence 5 788999999999998 99999988 999999997643211 01223445555 899999999998 9
Q ss_pred EEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 292 FASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 292 las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|++++.||.|++||++....++..+..|...|.+++|+|++ .+|++++.||.|++||+++.+
T Consensus 190 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 190 IIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp EEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCc
Confidence 99999999999999998556778888999999999999999 899999999999999999865
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=204.76 Aligned_cols=211 Identities=13% Similarity=0.203 Sum_probs=166.5
Q ss_pred cCcceeEEEEe-ccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVR-DTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (358)
Q Consensus 66 ~wP~ls~~~~~-d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (358)
.-+..++.|.| +. .+|++|+ .++.|.||++..-....
T Consensus 81 ~~~V~~~~~~p~~~-----------~~l~s~s-----~dg~v~vw~~~~~~~~~-------------------------- 118 (402)
T 2aq5_A 81 TAPVLDIAWCPHND-----------NVIASGS-----EDCTVMVWEIPDGGLVL-------------------------- 118 (402)
T ss_dssp SSCEEEEEECTTCT-----------TEEEEEE-----TTSEEEEEECCTTCCSS--------------------------
T ss_pred CCCEEEEEeCCCCC-----------CEEEEEe-----CCCeEEEEEccCCCCcc--------------------------
Confidence 45778999988 43 4777777 45789999884210000
Q ss_pred CCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE
Q 018322 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (358)
.. ..+. ..+.+|.+.|++++|+|++..+|++++.||.|+|||+.. ..++..
T Consensus 119 ---~~---~~~~--~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~---------------------~~~~~~ 169 (402)
T 2aq5_A 119 ---PL---REPV--ITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT---------------------GAAVLT 169 (402)
T ss_dssp ---CB---CSCS--EEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT---------------------TEEEEE
T ss_pred ---cc---CCce--EEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC---------------------CCccEE
Confidence 00 0222 455689999999999999867999999999999999987 456677
Q ss_pred E--cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcc-ccCCCc-EEEEEECCCCCCEEEEE---EC
Q 018322 225 F--GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF-IGHSAS-VEDLQWSPTEPDVFASC---SV 297 (358)
Q Consensus 225 ~--~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~-V~~v~~sp~~~~~las~---s~ 297 (358)
+ .+|...|++++|+|++. +|++|+.||.|++||++++.. . ..+ .+|... +.++.|+|++. +|++| +.
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~ 243 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGTV-V---AEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMS 243 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEE-E---EEEECSSCSSSCCEEEECSTTE-EEEEEECTTC
T ss_pred EecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCce-e---eeeccCCCCCcceEEEEcCCCc-EEEEeccCCC
Confidence 7 78999999999999998 999999999999999987432 2 344 567765 89999999987 88888 78
Q ss_pred CCcEEEEECCCCCCeeEEE-ecCCCCeEEEEEeCCCCcEE-EEEeCCCCEEEEeCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSF-KAHNADVNVISWNRLASCLL-ASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~-~~h~~~V~~i~~~p~~~~~l-asgs~Dg~i~iwDlr~~~ 354 (358)
|+.|++||++....++... ..|...|.+++|+|++ .+| ++|+.||.|++||+++.+
T Consensus 244 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 244 ERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDT-NIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTT-TEEEEEETTCSCEEEEEECSST
T ss_pred CceEEEEcCccccCCceEEeccCCCceeEEEEcCCC-CEEEEEEcCCCeEEEEEecCCC
Confidence 9999999999865544444 3577889999999999 555 567789999999999876
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-25 Score=208.41 Aligned_cols=175 Identities=16% Similarity=0.254 Sum_probs=135.9
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
.+|.+.|++++|+|++ .+|++| .||.|+|||+........... ..+ ..+.+|...|++++|+|++
T Consensus 174 ~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~------------~~~-~~~~~~~~~v~~~~~~p~~ 238 (447)
T 3dw8_B 174 NAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVD------------IKP-ANMEELTEVITAAEFHPNS 238 (447)
T ss_dssp SCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEE------------CCC-SSGGGCCCCEEEEEECSSC
T ss_pred cCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeee------------ccc-ccccccCcceEEEEECCCC
Confidence 5799999999999988 788888 799999999985211110000 000 1356899999999999998
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCC------------cEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA------------SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~------------~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
..+|++|+.||.|++||+++..........+.+|.. .|.+++|+|++. +|++++. +.|+|||++..
T Consensus 239 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~-~~v~iwd~~~~ 316 (447)
T 3dw8_B 239 CNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRDY-LSVKVWDLNME 316 (447)
T ss_dssp TTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEES-SEEEEEETTCC
T ss_pred CcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEeeC-CeEEEEeCCCC
Confidence 339999999999999999875432211244556654 999999999998 8999999 99999999974
Q ss_pred CCeeEEEecCCCC---------------eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 310 KSALTSFKAHNAD---------------VNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 310 ~~~~~~~~~h~~~---------------V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..++..+..|... +..++|+|++ .+|++|+.||.|+|||+++.+
T Consensus 317 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 317 NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTTCC
T ss_pred ccccceeeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCCCc
Confidence 5677777777542 2348999999 899999999999999998764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-24 Score=199.73 Aligned_cols=163 Identities=17% Similarity=0.242 Sum_probs=142.2
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC---C---CCCeEEE
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG---H---KDEGYAI 235 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h---~~~v~~l 235 (358)
..|...|+++.|+|++ +|++++.||.|++||+.. ..++..+.. | ...+.++
T Consensus 183 ~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~---------------------~~~~~~~~~~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 183 MTPSQFATSVDISERG--LIATGFNNGTVQISELST---------------------LRPLYNFESQHSMINNSNSIRSV 239 (397)
T ss_dssp SSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTT---------------------TEEEEEEECCC---CCCCCEEEE
T ss_pred cCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCC---------------------CceeEEEeccccccccCCccceE
Confidence 5589999999999988 899999999999999986 466777888 8 8999999
Q ss_pred EeCCCCCCeEEEEeCC---CcEEEEecCCCCCcccCCCcccc-------------CCCcEEEEEECCCCCCEEEEEECCC
Q 018322 236 DWNPITTGRLVTGDCN---SCIYLWEPASDATWNVDPNPFIG-------------HSASVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~d---g~I~lwd~~~~~~~~~~~~~~~~-------------h~~~V~~v~~sp~~~~~las~s~Dg 299 (358)
+|+|++. +|++|+.| |.|++||+++... . ..+.+ |...|.+++|+|++. +|++++.||
T Consensus 240 ~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg 313 (397)
T 1sq9_A 240 KFSPQGS-LLAIAHDSNSFGCITLYETEFGER-I---GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDG 313 (397)
T ss_dssp EECSSTT-EEEEEEEETTEEEEEEEETTTCCE-E---EEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTS
T ss_pred EECCCCC-EEEEEecCCCCceEEEEECCCCcc-c---ceeccCcccccccccccccCCcEEEEEECCCCC-EEEEEeCCC
Confidence 9999998 99999999 9999999987432 2 44556 899999999999998 999999999
Q ss_pred cEEEEECCCCCCeeEEEe------cC---------------CCCeEEEEEeCCCC---------cEEEEEeCCCCEEEEe
Q 018322 300 HIAIWDTRVGKSALTSFK------AH---------------NADVNVISWNRLAS---------CLLASGSDDGTFSIHD 349 (358)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~------~h---------------~~~V~~i~~~p~~~---------~~lasgs~Dg~i~iwD 349 (358)
.|+|||++++ .++..+. .| ...|++++|+|++. .+|++|+.||.|+|||
T Consensus 314 ~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 314 KLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp EEEEEETTTT-EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred eEEEEEcCCC-ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 9999999985 5777787 77 99999999999973 5999999999999999
Q ss_pred CCCCC
Q 018322 350 LRLLK 354 (358)
Q Consensus 350 lr~~~ 354 (358)
+++++
T Consensus 393 ~~~g~ 397 (397)
T 1sq9_A 393 EAGGK 397 (397)
T ss_dssp EEC--
T ss_pred cCCCC
Confidence 98753
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-24 Score=211.02 Aligned_cols=161 Identities=21% Similarity=0.387 Sum_probs=143.4
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
...+.+|.+.|++++|+|++ .+||+++.|+.|+|||... +.+..+.+|...|++++|
T Consensus 378 ~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~----------------------~~~~~~~~~~~~v~~~~~ 434 (577)
T 2ymu_A 378 LQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG----------------------QLLQTLTGHSSSVWGVAF 434 (577)
T ss_dssp EEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTC----------------------CEEEEEECCSSCEEEEEE
T ss_pred EEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCC----------------------CEEEEecCCCCCeEEEEE
Confidence 35667899999999999999 7899999999999999643 566778899999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
+|++. +|++++.|+.|++||... .. ...+.+|...|.+++|+|++. +|++++.|+.|+|||.. ..++..+.
T Consensus 435 s~d~~-~l~~~~~d~~v~~w~~~~--~~---~~~~~~~~~~v~~~~~spd~~-~las~~~d~~i~iw~~~--~~~~~~~~ 505 (577)
T 2ymu_A 435 SPDDQ-TIASASDDKTVKLWNRNG--QL---LQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRN--GQLLQTLT 505 (577)
T ss_dssp CTTSS-EEEEEETTSEEEEEETTS--CE---EEEEECCSSCEEEEEECTTSC-EEEEEETTSEEEEEETT--SCEEEEEE
T ss_pred CCCCC-EEEEEcCCCEEEEEECCC--CE---EEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCEEEEEcCC--CCEEEEEe
Confidence 99998 999999999999999743 22 256788999999999999998 99999999999999964 35788889
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+|...|++|+|+|++ .+||+|+.||.|+|||+.
T Consensus 506 ~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 506 GHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN 538 (577)
T ss_dssp CCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT
T ss_pred CCCCCEEEEEEcCCC-CEEEEEECcCEEEEEeCC
Confidence 999999999999999 899999999999999963
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-24 Score=203.70 Aligned_cols=169 Identities=17% Similarity=0.153 Sum_probs=141.6
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc--CCCCCeEEEEeCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAIDWNP 239 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~s~ 239 (358)
.+|.+.|++++|+|++..++|+++.||.|+|||+... ....+..+. .|...|++++|+|
T Consensus 99 ~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~-------------------~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 99 PPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKT-------------------SKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSS-------------------SSSCEEEEEEEECSSCEEEEEECT
T ss_pred CccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCC-------------------CCceeeeeecccCCCCceEEEEcC
Confidence 4688899999999999555699999999999999820 034555554 5678999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC---CCCEEEEEECCCcEEEEECCCCCCeeEE-
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT---EPDVFASCSVDGHIAIWDTRVGKSALTS- 315 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---~~~~las~s~Dg~I~iwD~r~~~~~~~~- 315 (358)
++. +|++|+.+|.|++|++.+..........+.+|...|.+++|+|+ +. +|++|+.|+.|++||++++. ++..
T Consensus 160 ~~~-~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~-~~~~~ 236 (450)
T 2vdu_B 160 DDT-TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCF-IVDKW 236 (450)
T ss_dssp TSS-EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTT-CEEEE
T ss_pred CCC-EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCc-eeeee
Confidence 998 99999999999999997743321123467889999999999999 77 99999999999999999854 5555
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+.+|...|++++|+ ++ .+|++|+.|++|+|||+++++
T Consensus 237 ~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~ 273 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGK 273 (450)
T ss_dssp CCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCC
T ss_pred ecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCc
Confidence 56899999999999 88 999999999999999999875
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=199.98 Aligned_cols=210 Identities=18% Similarity=0.291 Sum_probs=165.8
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|.|+... ...+|++|+ .++.|.||++.
T Consensus 69 ~~~v~~~~~~~~~~~-------~~~~l~~~~-----~dg~i~v~d~~--------------------------------- 103 (366)
T 3k26_A 69 DENFYTCAWTYDSNT-------SHPLLAVAG-----SRGIIRIINPI--------------------------------- 103 (366)
T ss_dssp TCCEEEEEEEECTTT-------CCEEEEEEE-----TTCEEEEECTT---------------------------------
T ss_pred CCcEEEEEeccCCCC-------CCCEEEEec-----CCCEEEEEEch---------------------------------
Confidence 355788899998421 125777777 45689999762
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
.......+.+|.+.|++++|+|.+..+|++++.||.|++||+.. ...+..+
T Consensus 104 --------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------------------~~~~~~~ 154 (366)
T 3k26_A 104 --------TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT---------------------DTLVAIF 154 (366)
T ss_dssp --------TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT---------------------TEEEEEE
T ss_pred --------hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec---------------------CeEEEEe
Confidence 12233456689999999999994448999999999999999986 3555566
Q ss_pred ---cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCccc------------------------CCCccccCCCc
Q 018322 226 ---GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV------------------------DPNPFIGHSAS 278 (358)
Q Consensus 226 ---~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~------------------------~~~~~~~h~~~ 278 (358)
.+|...|.+++|+|++. +|++|+.||.|++||+++...... ......+|...
T Consensus 155 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 155 GGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp CSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred cccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence 68999999999999998 999999999999999976321100 00112238999
Q ss_pred EEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-------------eeEEEecCCCCeEEEEEeCC--CCcEEEEEeCCC
Q 018322 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-------------ALTSFKAHNADVNVISWNRL--ASCLLASGSDDG 343 (358)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-------------~~~~~~~h~~~V~~i~~~p~--~~~~lasgs~Dg 343 (358)
|.+++|+ +. +|++++.||.|++||++.... .+..+..|...|++++|+|+ + .+|++|+.||
T Consensus 234 v~~~~~~--~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~l~~~~~dg 309 (366)
T 3k26_A 234 VDCVRWL--GD-LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ-KMLALGNQVG 309 (366)
T ss_dssp CCEEEEE--TT-EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS-SEEEEECTTS
T ss_pred EEEEEEc--CC-EEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC-cEEEEEecCC
Confidence 9999998 45 999999999999999987532 35667889999999999999 8 9999999999
Q ss_pred CEEEEeCCCCC
Q 018322 344 TFSIHDLRLLK 354 (358)
Q Consensus 344 ~i~iwDlr~~~ 354 (358)
.|++||+++.+
T Consensus 310 ~i~vwd~~~~~ 320 (366)
T 3k26_A 310 KLYVWDLEVED 320 (366)
T ss_dssp CEEEEECCSSS
T ss_pred cEEEEECCCCC
Confidence 99999998764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-24 Score=198.30 Aligned_cols=166 Identities=19% Similarity=0.336 Sum_probs=142.0
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
+|.+.|++++|+|.+..+|++++.||.|++||+.. ......+. +...+.++.|++.+.
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------------------~~~~~~~~-~~~~~~~~~~~~~~~ 154 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT---------------------LQTADVFN-FEETVYSHHMSPVST 154 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT---------------------TEEEEEEE-CSSCEEEEEECSSCS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC---------------------Cccceecc-CCCceeeeEeecCCC
Confidence 59999999999996658999999999999999987 34444443 677899999998643
Q ss_pred C--eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE----
Q 018322 243 G--RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF---- 316 (358)
Q Consensus 243 ~--~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~---- 316 (358)
. +|++|+.+|.|++||++++.. ...+.+|...|.+++|+|++..+|++|+.||.|++||++....++..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 230 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSC----SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCC----CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT
T ss_pred CCcEEEEEcCCCeEEEEeCCCcce----eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc
Confidence 2 899999999999999987433 256778999999999999998789999999999999999865555555
Q ss_pred -----------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 317 -----------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 317 -----------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
..|...|++++|+|++ .+|++|+.||.|++||+++.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 231 GKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCB
T ss_pred cccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCcc
Confidence 5788999999999999 9999999999999999998764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=219.49 Aligned_cols=208 Identities=20% Similarity=0.248 Sum_probs=171.0
Q ss_pred CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (358)
Q Consensus 67 wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
=+..++.|-|++ .+|++|+ .++.|.||++.+
T Consensus 10 ~~V~~l~~s~dg-----------~~latg~-----~dg~I~vwd~~~--------------------------------- 40 (753)
T 3jro_A 10 ELIHDAVLDYYG-----------KRLATCS-----SDKTIKIFEVEG--------------------------------- 40 (753)
T ss_dssp CCEEEECCCSSS-----------CCEEEEE-----TTTEEEEEEEET---------------------------------
T ss_pred ceeEEEEECCCC-----------CeEEEEE-----CCCcEEEEecCC---------------------------------
Confidence 356677777774 4777787 456999999841
Q ss_pred ccCCCCCCCeEEEEEecCCCceeEEEEcCC--CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE
Q 018322 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQ--NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (358)
........+.+|.+.|++++|+|. + .+|++|+.||.|++||+... ....+..
T Consensus 41 ------~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~-------------------~~~~~~~ 94 (753)
T 3jro_A 41 ------ETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENG-------------------RWSQIAV 94 (753)
T ss_dssp ------TEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETT-------------------EEEEEEE
T ss_pred ------CCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCC-------------------ccccccc
Confidence 123444667789999999999987 5 79999999999999998762 1125677
Q ss_pred EcCCCCCeEEEEeCCC--CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC-------------CC
Q 018322 225 FGGHKDEGYAIDWNPI--TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT-------------EP 289 (358)
Q Consensus 225 ~~~h~~~v~~l~~s~~--~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~-------------~~ 289 (358)
+.+|...|++++|+|+ +. +|++|+.||.|++||++...... ...+.+|...|.+++|+|. +.
T Consensus 95 ~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~--~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~ 171 (753)
T 3jro_A 95 HAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR 171 (753)
T ss_dssp ECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCC--CEEEECCSSCEEEEEECCCC---------CGGGC
T ss_pred ccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcc--eeEeecCCCceEEEEecCcccccccccccCCCCC
Confidence 8899999999999999 76 99999999999999998753322 2456789999999999995 55
Q ss_pred CEEEEEECCCcEEEEECCCCC---CeeEEEecCCCCeEEEEEeCC---CCcEEEEEeCCCCEEEEeCCCCC
Q 018322 290 DVFASCSVDGHIAIWDTRVGK---SALTSFKAHNADVNVISWNRL---ASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 290 ~~las~s~Dg~I~iwD~r~~~---~~~~~~~~h~~~V~~i~~~p~---~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+|++|+.||.|++||++.+. .+...+.+|...|++++|+|+ + .+|++|+.||.|++||+++.+
T Consensus 172 -~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~-~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 172 -KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-SYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp -CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-EEEEEEESSSCEEEEEESSSS
T ss_pred -EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC-CEEEEEecCCEEEEecCCCCC
Confidence 89999999999999999854 244567889999999999999 6 999999999999999999864
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-23 Score=197.92 Aligned_cols=173 Identities=22% Similarity=0.376 Sum_probs=135.0
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.......+|...|.++.+++ .++++|+.|+.+++||... ....+..+.+|...+.++
T Consensus 180 ~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~--------------------~~~~~~~~~~h~~~~~~~ 236 (420)
T 4gga_A 180 KRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRV--------------------AEHHVATLSGHSQEVCGL 236 (420)
T ss_dssp EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTS--------------------SSCEEEEEECCSSCEEEE
T ss_pred cEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecc--------------------cceeeEEecccccceeee
Confidence 44466788999999998864 6899999999999999887 346667889999999999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE--CCCcEEEEEC-------
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWDT------- 306 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD~------- 306 (358)
.|+|.+. +|++++.|+.|++|+...+............|...|.+++|+|.+..++++++ .|++|+|||+
T Consensus 237 ~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 237 RWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp EECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred eecCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 9999998 99999999999999997743322222344556667777777766555555432 4555555554
Q ss_pred ------------------------------------CCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 307 ------------------------------------RVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 307 ------------------------------------r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+++ .++..+.+|...|++|+|+|++ .+|+||+.||+|+|||+
T Consensus 316 ~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH~~~V~~l~~spdg-~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 316 AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDG-ATVASAAADETLRLWRC 393 (420)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTS-SCEEEEETTTEEEEECC
T ss_pred eeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCC-CEEEEEecCCeEEEEEC
Confidence 442 3566778899999999999999 89999999999999999
Q ss_pred CCCC
Q 018322 351 RLLK 354 (358)
Q Consensus 351 r~~~ 354 (358)
....
T Consensus 394 ~~~~ 397 (420)
T 4gga_A 394 FELD 397 (420)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7643
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-24 Score=195.83 Aligned_cols=168 Identities=17% Similarity=0.229 Sum_probs=137.6
Q ss_pred EEEEEecCCCceeEEEEcCCC-CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQN-PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
......+|...|+.++|++.+ ..++++++.|+.|++||+.. ...+..+.+|...|++|
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~---------------------~~~~~~~~~h~~~v~~~ 221 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN---------------------CKLKTNHIGHTGYLNTV 221 (340)
T ss_dssp EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEE
T ss_pred EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC---------------------CceeeEecCCCCcEEEE
Confidence 345567799999999999876 35789999999999999987 56677889999999999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
+|+|++. +|++|+.||.|++||+++... . ..+. +...|.+++|+|++. +++++.|+.|+|||++.. ..+..
T Consensus 222 ~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~-~---~~~~-~~~~v~~~~~~~~~~--~~~~~~d~~i~iwd~~~~-~~~~~ 292 (340)
T 4aow_A 222 TVSPDGS-LCASGGKDGQAMLWDLNEGKH-L---YTLD-GGDIINALCFSPNRY--WLCAATGPSIKIWDLEGK-IIVDE 292 (340)
T ss_dssp EECTTSS-EEEEEETTCEEEEEETTTTEE-E---EEEE-CSSCEEEEEECSSSS--EEEEEETTEEEEEETTTT-EEEEE
T ss_pred EECCCCC-EEEEEeCCCeEEEEEeccCce-e---eeec-CCceEEeeecCCCCc--eeeccCCCEEEEEECCCC-eEEEe
Confidence 9999998 999999999999999987432 2 2333 456899999999875 667778999999999873 23322
Q ss_pred ---------EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 316 ---------FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 316 ---------~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
..+|...|++++|+|++ .+|++|+.||.|+|||++++++
T Consensus 293 ~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 293 LKQEVISTSSKAEPPQCTSLAWSADG-QTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp ECCC-------CCCCCEEEEEECTTS-SEEEEEETTSCEEEEEEEC---
T ss_pred ccccceeeeccCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEeCCCcCC
Confidence 35788999999999999 8999999999999999998764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=202.60 Aligned_cols=208 Identities=13% Similarity=0.128 Sum_probs=157.9
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|.|++ .+|++|+ .++.|.||++..-
T Consensus 55 ~~~v~~~~~s~~~-----------~~l~s~s-----~d~~v~vwd~~~~------------------------------- 87 (377)
T 3dwl_C 55 DKIVTCVDWAPKS-----------NRIVTCS-----QDRNAYVYEKRPD------------------------------- 87 (377)
T ss_dssp SSCEEEEEECTTT-----------CCEEEEE-----TTSSEEEC------------------------------------
T ss_pred CceEEEEEEeCCC-----------CEEEEEe-----CCCeEEEEEcCCC-------------------------------
Confidence 4567888898874 4777777 4568999987310
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
...........|.+.|++++|+|++ .+|++++.||.|++||+.... .......+
T Consensus 88 -------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~------------------~~~~~~~~ 141 (377)
T 3dwl_C 88 -------GTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQEN------------------DWWVSKHL 141 (377)
T ss_dssp --------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----------------------CCCCEEE
T ss_pred -------CceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcc------------------cceeeeEe
Confidence 0011234566899999999999988 789999999999999998721 01245667
Q ss_pred cC-CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCC--------------cccCCCccccCCCcEEEEEECCCCCC
Q 018322 226 GG-HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT--------------WNVDPNPFIGHSASVEDLQWSPTEPD 290 (358)
Q Consensus 226 ~~-h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~--------------~~~~~~~~~~h~~~V~~v~~sp~~~~ 290 (358)
.+ |...|++++|+|++. +|++|+.|+.|++||+..... .......+ +|...|.+++|+|++.
T Consensus 142 ~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~- 218 (377)
T 3dwl_C 142 KRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN- 218 (377)
T ss_dssp CSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-
T ss_pred ecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-
Confidence 77 999999999999998 999999999999999963210 01112334 8999999999999998
Q ss_pred EEEEEECCCcEEEEECCCCCCe---eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 291 VFASCSVDGHIAIWDTRVGKSA---LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~---~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+|++++.||.|+|||++++..+ +..+..|...|++++|+|++ .+|++|+.++.+ +|+..
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCC
T ss_pred EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeC
Confidence 9999999999999999986431 66778999999999999999 899998766555 77765
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-23 Score=189.80 Aligned_cols=210 Identities=19% Similarity=0.279 Sum_probs=172.2
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.=+..++.|.|+.. .+|+.|. .++.|.||++....
T Consensus 38 ~~~V~~v~~sp~~~----------~~l~S~s-----~D~~i~vWd~~~~~------------------------------ 72 (340)
T 4aow_A 38 NGWVTQIATTPQFP----------DMILSAS-----RDKTIIMWKLTRDE------------------------------ 72 (340)
T ss_dssp SSCEEEEEECTTCT----------TEEEEEE-----TTSCEEEEEECCSS------------------------------
T ss_pred cCCEEEEEEeCCCC----------CEEEEEc-----CCCeEEEEECCCCC------------------------------
Confidence 34677889988731 3777777 56789999984100
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
. ........+.+|.+.|+++.|+|++ .+|++++.||.|++|+... .......
T Consensus 73 ---~---~~~~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~---------------------~~~~~~~ 124 (340)
T 4aow_A 73 ---T---NYGIPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTT---------------------GTTTRRF 124 (340)
T ss_dssp ---S---CSEEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEE
T ss_pred ---c---ccceeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecc---------------------cceeeee
Confidence 0 1334446678999999999999999 7999999999999999987 3445566
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCC-CEEEEEECCCcEEEE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEP-DVFASCSVDGHIAIW 304 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~las~s~Dg~I~iw 304 (358)
..+...+..+.+++.+. +|++|+.|+.+++||+....... ....+|...|..++|++++. .++++++.|+.|++|
T Consensus 125 ~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~ 200 (340)
T 4aow_A 125 VGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYT---VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200 (340)
T ss_dssp ECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEE---ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEE
T ss_pred cCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEE---EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEE
Confidence 67788899999999998 99999999999999987643322 34567999999999998753 378999999999999
Q ss_pred ECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 305 DTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|++.+ .++..+.+|...|++|+|+|++ .+|++|+.||.|++||+++.+
T Consensus 201 d~~~~-~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 201 NLANC-KLKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp ETTTT-EEEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTE
T ss_pred ECCCC-ceeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCc
Confidence 99984 5777889999999999999999 899999999999999998764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-24 Score=199.38 Aligned_cols=174 Identities=18% Similarity=0.157 Sum_probs=145.8
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE--cCCCCC
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GGHKDE 231 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~ 231 (358)
...+...+.+|.+.|++++|+|+++.+||+|+.||.|+|||+.. ......+ .+|...
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------------------~~~~~~~~~~~h~~~ 120 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV---------------------QNKTSFIQGMGPGDA 120 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTS---------------------TTCEEEECCCSTTCB
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC---------------------cccceeeecCCcCCc
Confidence 34455677899999999999999877999999999999999986 2333444 379999
Q ss_pred eEEEEeCC-CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 232 GYAIDWNP-ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 232 v~~l~~s~-~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
|++++|+| ++. +|++|+.|+.|++||+.. .. ........+|...|.+++|+|++. +|++|+.|+.|++||++.
T Consensus 121 v~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~-~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~-- 194 (383)
T 3ei3_B 121 ITGMKFNQFNTN-QLFVSSIRGATTLRDFSG-SV-IQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDG-- 194 (383)
T ss_dssp EEEEEEETTEEE-EEEEEETTTEEEEEETTS-CE-EEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTS--
T ss_pred eeEEEeCCCCCC-EEEEEeCCCEEEEEECCC-Cc-eEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCC--
Confidence 99999999 455 999999999999999975 22 211122334568899999999998 999999999999999953
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.++..+..|...|++++|+|++..+|++|+.|+.|++||+++.+
T Consensus 195 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 238 (383)
T 3ei3_B 195 HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK 238 (383)
T ss_dssp CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCC
T ss_pred CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCC
Confidence 57888899999999999999994499999999999999999754
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=193.00 Aligned_cols=210 Identities=18% Similarity=0.260 Sum_probs=163.3
Q ss_pred ccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 65 IGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (358)
Q Consensus 65 ~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (358)
..-+..++.|.|++. .++++|+.. ..++.|.||++..
T Consensus 17 h~~~v~~~~~~p~~~----------~l~~~~s~~--~~d~~v~iw~~~~------------------------------- 53 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSA----------KFVTMGNFA--RGTGVIQLYEIQH------------------------------- 53 (357)
T ss_dssp CSSCEEEEEECTTSS----------EEEEEEC----CCCEEEEEEEECS-------------------------------
T ss_pred CCCceEEEEEcCCCc----------eEEEecCcc--CCCcEEEEEeCCC-------------------------------
Confidence 345778999998752 455666532 1367999998831
Q ss_pred CCccCCCCCCCeEEEEEecCCCceeEEEEcCCC--CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc
Q 018322 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (358)
.........+|.+.|++++|+|++ ..+|++++.||.|++||+.. ...++
T Consensus 54 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------------------~~~~~ 104 (357)
T 3i2n_A 54 ---------GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA--------------------PEMPV 104 (357)
T ss_dssp ---------SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS--------------------CSSCS
T ss_pred ---------CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC--------------------CCccE
Confidence 223334455899999999999983 37999999999999999987 22377
Q ss_pred EEEcCCCCCeEEEEe------CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccC----CCcEEEEE----ECCCC
Q 018322 223 VKFGGHKDEGYAIDW------NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH----SASVEDLQ----WSPTE 288 (358)
Q Consensus 223 ~~~~~h~~~v~~l~~------s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h----~~~V~~v~----~sp~~ 288 (358)
..+.+|...|.+++| +|++. +|++|+.||.|++||++...... ..+..| ...|.+++ |+|++
T Consensus 105 ~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (357)
T 3i2n_A 105 YSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPV---ANMEPVQGENKRDCWTVAFGNAYNQEE 180 (357)
T ss_dssp EEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCS---EEECCCTTSCCCCEEEEEEECCCC-CC
T ss_pred EEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcc---eeccccCCCCCCceEEEEEEeccCCCC
Confidence 889999999999965 67787 99999999999999998754222 333333 34899998 78888
Q ss_pred CCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeC---CCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 289 PDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR---LASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 289 ~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p---~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
. +|++++.||.|++||++.+. ......|...|++++|+| ++ .+|++|+.||.|++||+++.+
T Consensus 181 ~-~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 181 R-VVCAGYDNGDIKLFDLRNMA--LRWETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp C-EEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEE
T ss_pred C-EEEEEccCCeEEEEECccCc--eeeecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCC
Confidence 8 99999999999999999843 344577899999999999 77 899999999999999998653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=194.32 Aligned_cols=209 Identities=12% Similarity=0.076 Sum_probs=165.3
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|.|++ .+|++|+ .++.|.||++..
T Consensus 52 ~~~v~~~~~~~~~-----------~~l~~~~-----~dg~i~vwd~~~-------------------------------- 83 (372)
T 1k8k_C 52 NGQVTGVDWAPDS-----------NRIVTCG-----TDRNAYVWTLKG-------------------------------- 83 (372)
T ss_dssp SSCEEEEEEETTT-----------TEEEEEE-----TTSCEEEEEEET--------------------------------
T ss_pred CCcccEEEEeCCC-----------CEEEEEc-----CCCeEEEEECCC--------------------------------
Confidence 4467788888874 3777777 456899998841
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
...........|.+.|+++.|+|++ .+|++++.+|.|++||+...... .......
T Consensus 84 -------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~-----------------~~~~~~~ 138 (372)
T 1k8k_C 84 -------RTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDW-----------------WVCKHIK 138 (372)
T ss_dssp -------TEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTE-----------------EEEEEEC
T ss_pred -------CeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcc-----------------eeeeeee
Confidence 1223334557799999999999998 79999999999999999762100 0012233
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCC--------------cccCCCccccCCCcEEEEEECCCCCCE
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT--------------WNVDPNPFIGHSASVEDLQWSPTEPDV 291 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~--------------~~~~~~~~~~h~~~V~~v~~sp~~~~~ 291 (358)
.+|...+.+++|+|++. +|++|+.||.|++||++.... .......+.+|...|.+++|+|++. +
T Consensus 139 ~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 216 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-R 216 (372)
T ss_dssp TTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-E
T ss_pred cccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-E
Confidence 67889999999999998 999999999999999752100 0011244568999999999999998 9
Q ss_pred EEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 292 FASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 292 las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
|++++.||.|++||++++ .++..+..|...|++++|+|++ .+|++| .|+.|++|+++.
T Consensus 217 l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 217 VAWVSHDSTVCLADADKK-MAVATLASETLPLLAVTFITES-SLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETT-EEEEEE-TTSSCEEEEEET
T ss_pred EEEEeCCCEEEEEECCCC-ceeEEEccCCCCeEEEEEecCC-CEEEEE-eCCeEEEEEccC
Confidence 999999999999999985 5788889999999999999999 788877 899999999987
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-24 Score=214.80 Aligned_cols=175 Identities=21% Similarity=0.258 Sum_probs=147.3
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.+...+.+|.+.|++|+|+|++..+|+||+.||+|+||++...... .......+.+|...|.++
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------~~~~~~~~~~h~~~v~~v 436 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------YGVAQRRLTGHSHFVEDV 436 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------SCEEEEEEECCSSCEEEE
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------cccccceecCCCCcEEEE
Confidence 3445678999999999999988789999999999999999763111 123456788999999999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
+|+|++. +|++|+.||+|+|||+.++ .. ...+.+|...|.+++|+|++. .|++|+.|++|+|||++.. +...
T Consensus 437 ~~s~~g~-~l~sgs~Dg~v~vwd~~~~-~~---~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~--~~~~ 508 (694)
T 3dm0_A 437 VLSSDGQ-FALSGSWDGELRLWDLAAG-VS---TRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGE--CKYT 508 (694)
T ss_dssp EECTTSS-EEEEEETTSEEEEEETTTT-EE---EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSC--EEEE
T ss_pred EECCCCC-EEEEEeCCCcEEEEECCCC-cc---eeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCC--ccee
Confidence 9999998 9999999999999999773 22 256789999999999999998 8999999999999998753 3333
Q ss_pred E----ecCCCCeEEEEEeCCCC-cEEEEEeCCCCEEEEeCCCCC
Q 018322 316 F----KAHNADVNVISWNRLAS-CLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 316 ~----~~h~~~V~~i~~~p~~~-~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+ .+|...|++++|+|++. .+|++|+.||+|+|||+++.+
T Consensus 509 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~ 552 (694)
T 3dm0_A 509 ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552 (694)
T ss_dssp ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC
T ss_pred eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc
Confidence 3 46888999999999862 589999999999999998764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-23 Score=187.90 Aligned_cols=210 Identities=15% Similarity=0.255 Sum_probs=168.7
Q ss_pred ccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 018322 63 FHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDE 142 (358)
Q Consensus 63 ~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (358)
....-+..++.|.|++ .++++|+ ++.|.||++..-.
T Consensus 48 ~~h~~~v~~~~~~~~~-----------~~l~~~~------dg~i~iw~~~~~~--------------------------- 83 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPT-----------RHVYTGG------KGCVKVWDISHPG--------------------------- 83 (337)
T ss_dssp ECCSSCCCEEEECSSS-----------SEEEEEC------BSEEEEEETTSTT---------------------------
T ss_pred ccCCCceEEEEEecCC-----------cEEEEcC------CCeEEEEECCCCC---------------------------
Confidence 3446677788888774 3666664 3589999873100
Q ss_pred CCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc
Q 018322 143 DSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (358)
...+.......+|.+.|+++.|+|++ .+|++++.||.|++||+... .....
T Consensus 84 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~-------------------~~~~~ 134 (337)
T 1gxr_A 84 ---------NKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAP-------------------TPRIK 134 (337)
T ss_dssp ---------CCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC---------------------EEE
T ss_pred ---------ceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCC-------------------Cccee
Confidence 01334445555899999999999988 79999999999999999872 11245
Q ss_pred EEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEE
Q 018322 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIA 302 (358)
Q Consensus 223 ~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (358)
..+.+|...+.+++|+|++. +|++|+.+|.|++||+++. ... ..+.+|...|.+++|+|++. .|++++.||.|+
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~-~~~---~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~ 208 (337)
T 1gxr_A 135 AELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQ-TLV---RQFQGHTDGASCIDISNDGT-KLWTGGLDNTVR 208 (337)
T ss_dssp EEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT-EEE---EEECCCSSCEEEEEECTTSS-EEEEEETTSEEE
T ss_pred eecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCC-cee---eeeecccCceEEEEECCCCC-EEEEEecCCcEE
Confidence 66788999999999999998 9999999999999999874 322 45677999999999999998 999999999999
Q ss_pred EEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 303 IWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+||++.+ ..+..+ .|...+.+++|+|++ .+|++++.+|.|++||+++.+
T Consensus 209 ~~d~~~~-~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~ 257 (337)
T 1gxr_A 209 SWDLREG-RQLQQH-DFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPD 257 (337)
T ss_dssp EEETTTT-EEEEEE-ECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSC
T ss_pred EEECCCC-ceEeee-cCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCC
Confidence 9999984 344444 578889999999999 899999999999999998764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=197.82 Aligned_cols=165 Identities=20% Similarity=0.390 Sum_probs=140.6
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
...+.+|.+.|.++.|++ .++++++.||.|++||+.. ....+..+.+|...|.+++|
T Consensus 169 ~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~--------------------~~~~~~~~~~~~~~v~~~~~ 225 (401)
T 4aez_A 169 LRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRI--------------------ANHQIGTLQGHSSEVCGLAW 225 (401)
T ss_dssp EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTS--------------------SSCEEEEEECCSSCEEEEEE
T ss_pred EEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEeccc--------------------CcceeeEEcCCCCCeeEEEE
Confidence 355668999999999953 6999999999999999985 24667788899999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE--CCCcEEEEECCCCCCeeEE
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD~r~~~~~~~~ 315 (358)
+|++. +|++|+.||.|++||+++. ... ..+..|...|.+++|+|++..++++|+ .|+.|++||++++ .++..
T Consensus 226 ~~~~~-~l~s~~~d~~v~iwd~~~~-~~~---~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-~~~~~ 299 (401)
T 4aez_A 226 RSDGL-QLASGGNDNVVQIWDARSS-IPK---FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-ARVNT 299 (401)
T ss_dssp CTTSS-EEEEEETTSCEEEEETTCS-SEE---EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-CEEEE
T ss_pred cCCCC-EEEEEeCCCeEEEccCCCC-Ccc---EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-CEEEE
Confidence 99987 9999999999999999873 322 456779999999999999887999987 8999999999985 46666
Q ss_pred EecCCCCeEEEEEeCCCCcEEEE--EeCCCCEEEEeCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLAS--GSDDGTFSIHDLRLL 353 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~las--gs~Dg~i~iwDlr~~ 353 (358)
+. |...|++++|+|++ .+|++ |+.||.|+|||+++.
T Consensus 300 ~~-~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 300 VD-AGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp EE-CSSCEEEEEECSSS-SEEEEEECTTTCEEEEEEEETT
T ss_pred Ee-CCCcEEEEEECCCC-CeEEEEeecCCCcEEEEecCCc
Confidence 64 66789999999999 77777 448999999999874
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-24 Score=195.06 Aligned_cols=165 Identities=14% Similarity=0.213 Sum_probs=138.7
Q ss_pred cCCCceeEEEEcCCCC---cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 163 AHQGCVNRIRAMTQNP---HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~---~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.|.+.|++++|+|++. .+|++|+.||.|+|||+.. ...+..+.+|...|.+++|+|
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~---------------------~~~~~~~~~~~~~i~~~~~~~ 125 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT---------------------MQCIKHYVGHGNAINELKFHP 125 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT---------------------CCEEEEEESCCSCEEEEEECS
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh---------------------ceEeeeecCCCCcEEEEEECC
Confidence 3889999999999842 6999999999999999986 567788889999999999999
Q ss_pred -CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE----
Q 018322 240 -ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT---- 314 (358)
Q Consensus 240 -~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~---- 314 (358)
++. +|++|+.||.|++||++++ ........+.+|...|.+++|+|++. +|++++.||.|++||++++. .+.
T Consensus 126 ~~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~ 201 (366)
T 3k26_A 126 RDPN-LLLSVSKDHALRLWNIQTD-TLVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKR-MMNAIKE 201 (366)
T ss_dssp SCTT-EEEEEETTSCEEEEETTTT-EEEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHH-HHHHHHH
T ss_pred CCCC-EEEEEeCCCeEEEEEeecC-eEEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCc-cccccce
Confidence 666 9999999999999999874 32211222367999999999999998 99999999999999998742 221
Q ss_pred ------------------------EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 315 ------------------------SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 315 ------------------------~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
....|...|++++|+ + .+|++++.||.|++||+++.+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTC
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccc
Confidence 223499999999999 5 7999999999999999988754
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.6e-24 Score=197.54 Aligned_cols=163 Identities=8% Similarity=0.079 Sum_probs=128.6
Q ss_pred CCCceeEEEEcCCCCcE-EEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHI-CASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~-lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
+...+.+++|+|++..+ +|+++.|++|+|||+.. ..++..+. |..+|++|+|+|++.
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~---------------------~~~~~~~~-~~~~V~~v~fspdg~ 189 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD---------------------LTEKFEIE-TRGEVKDLHFSTDGK 189 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT---------------------TEEEEEEE-CSSCCCEEEECTTSS
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC---------------------CcEEEEeC-CCCceEEEEEccCCc
Confidence 34558899999999433 34556799999999987 45555554 777899999999998
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC----cEEEEECCCCCCe---eEE
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG----HIAIWDTRVGKSA---LTS 315 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg----~I~iwD~r~~~~~---~~~ 315 (358)
+|++++.+ .+++|+..++.... .....+|...|.+++|+|++. ++++++.|+ .+++|+++..... ...
T Consensus 190 -~l~s~s~~-~~~~~~~~~~~~~~--~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~ 264 (365)
T 4h5i_A 190 -VVAYITGS-SLEVISTVTGSCIA--RKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSKQ 264 (365)
T ss_dssp -EEEEECSS-CEEEEETTTCCEEE--EECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEEE
T ss_pred -eEEeccce-eEEEEEeccCccee--eeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecceeeee
Confidence 99999854 56667665533322 234567889999999999998 899998887 6889998764322 334
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+..|...|++++|+|++ .+||+|+.|++|+|||+++++
T Consensus 265 ~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 265 VTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLS 302 (365)
T ss_dssp EESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE
T ss_pred ecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCc
Confidence 67899999999999999 999999999999999999875
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=218.40 Aligned_cols=203 Identities=11% Similarity=0.067 Sum_probs=162.4
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|-|++ .+|++|+ .++.|+||+..
T Consensus 17 ~~~V~~lafspdg-----------~~lAsgs-----~Dg~I~lw~~~--------------------------------- 47 (902)
T 2oaj_A 17 SSKPIAAAFDFTQ-----------NLLAIAT-----VTGEVHIYGQQ--------------------------------- 47 (902)
T ss_dssp SSCEEEEEEETTT-----------TEEEEEE-----TTSEEEEECST---------------------------------
T ss_pred CCCcEEEEECCCC-----------CEEEEEe-----CCCEEEEEeCC---------------------------------
Confidence 4456788888885 4888888 45689998642
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
.... .....|.+.|++++|+| + .+||+++.|++|+|||+.. .+.+..+
T Consensus 48 --------~~~~-~~~~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~---------------------~~~~~~~ 95 (902)
T 2oaj_A 48 --------QVEV-VIKLEDRSAIKEMRFVK-G-IYLVVINAKDTVYVLSLYS---------------------QKVLTTV 95 (902)
T ss_dssp --------TCEE-EEECSSCCCEEEEEEET-T-TEEEEEETTCEEEEEETTT---------------------CSEEEEE
T ss_pred --------CcEE-EEEcCCCCCEEEEEEcC-C-CEEEEEECcCeEEEEECCC---------------------CcEEEEE
Confidence 1111 23356889999999999 6 5999999999999999987 4555566
Q ss_pred cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCC-------CccccCCCcEEEEEECCCCCCEEEEEECC
Q 018322 226 GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP-------NPFIGHSASVEDLQWSPTEPDVFASCSVD 298 (358)
Q Consensus 226 ~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~-------~~~~~h~~~V~~v~~sp~~~~~las~s~D 298 (358)
. |...|++++|+|++. +|++|+.||.|++||+.+........ ..+.+|.+.|.+|+|+|++...|++|+.|
T Consensus 96 ~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~d 173 (902)
T 2oaj_A 96 F-VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEY 173 (902)
T ss_dssp E-CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSS
T ss_pred c-CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCC
Confidence 4 667999999999998 99999999999999997643210000 23467999999999999765589999999
Q ss_pred CcEEEEECCCCCCeeEEEecC------------------CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 299 GHIAIWDTRVGKSALTSFKAH------------------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 299 g~I~iwD~r~~~~~~~~~~~h------------------~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|.| |||++++ .++..+..| ...|++++|+|++ .+||+|+.||+|+|||+++++
T Consensus 174 g~v-lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 174 VTL-TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp CEE-EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCC
T ss_pred CcE-EEECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCc
Confidence 999 9999984 466666554 5779999999999 999999999999999998764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-23 Score=193.54 Aligned_cols=163 Identities=20% Similarity=0.361 Sum_probs=139.8
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
|.+.|++++|+|++ .+||+++.||.|+|||.. ...+..+.+|...|++++|+|++.
T Consensus 107 ~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~~~~----------------------~~~~~~~~~~~~~v~~~~~~~~~~- 162 (425)
T 1r5m_A 107 TTNQVTCLAWSHDG-NSIVTGVENGELRLWNKT----------------------GALLNVLNFHRAPIVSVKWNKDGT- 162 (425)
T ss_dssp -CBCEEEEEECTTS-SEEEEEETTSCEEEEETT----------------------SCEEEEECCCCSCEEEEEECTTSS-
T ss_pred CCCceEEEEEcCCC-CEEEEEeCCCeEEEEeCC----------------------CCeeeeccCCCccEEEEEECCCCC-
Confidence 68899999999988 799999999999999933 466778889999999999999998
Q ss_pred eEEEEeCCCcEEEEecCCCCCcc----------------------------------------------------cCCCc
Q 018322 244 RLVTGDCNSCIYLWEPASDATWN----------------------------------------------------VDPNP 271 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~----------------------------------------------------~~~~~ 271 (358)
+|++++.||.|++||+.++.... .....
T Consensus 163 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~ 242 (425)
T 1r5m_A 163 HIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGK 242 (425)
T ss_dssp EEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEE
T ss_pred EEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeee
Confidence 99999999999999997632100 00123
Q ss_pred cccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 272 ~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+..|...|.+++|+|++. +|++++.||.|++||++.+ .++..+..|...|.+++|+|++ +|++++.||.|++||++
T Consensus 243 ~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 243 LIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp ECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETT
T ss_pred eccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECC
Confidence 446889999999999998 9999999999999999984 5777888899999999999988 89999999999999998
Q ss_pred CCC
Q 018322 352 LLK 354 (358)
Q Consensus 352 ~~~ 354 (358)
+.+
T Consensus 319 ~~~ 321 (425)
T 1r5m_A 319 QNT 321 (425)
T ss_dssp TTE
T ss_pred CCc
Confidence 764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=197.63 Aligned_cols=162 Identities=15% Similarity=0.253 Sum_probs=143.0
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
....|.+.|+++.|+|++ .+|++++.||.|++||+.. ..++..+.+|...+.+++|+|
T Consensus 242 ~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~---------------------~~~~~~~~~~~~~i~~~~~~~ 299 (425)
T 1r5m_A 242 KLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGN---------------------GNSQNCFYGHSQSIVSASWVG 299 (425)
T ss_dssp EECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSS---------------------BSCSEEECCCSSCEEEEEEET
T ss_pred eeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCC---------------------CccceEecCCCccEEEEEECC
Confidence 445899999999999998 6999999999999999987 466778889999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC---------
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--------- 310 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--------- 310 (358)
++ +|++++.||.|++||+++.. . ...+..|...|.+++|+|++. +|++++.||.|++||++...
T Consensus 300 ~~--~l~~~~~d~~i~i~d~~~~~-~---~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 372 (425)
T 1r5m_A 300 DD--KVISCSMDGSVRLWSLKQNT-L---LALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLNSKSRSLYGN 372 (425)
T ss_dssp TT--EEEEEETTSEEEEEETTTTE-E---EEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHHC--------
T ss_pred CC--EEEEEeCCCcEEEEECCCCc-E---eEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCccceeeeecc
Confidence 87 89999999999999997733 2 245677899999999999998 99999999999999998742
Q ss_pred ----------CeeEEEecCCC--CeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 311 ----------SALTSFKAHNA--DVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 311 ----------~~~~~~~~h~~--~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.++..+..|.. .|++++|+|++ .+|++|+.||.|+|||++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 373 RDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-NKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ------CEECCEEEEECCTTCCCCEEEEEECTTS-SEEEEEESSSCCEEEECC
T ss_pred cccccCcccchhhhhhcCcccCCceEEEEccCCC-ceEEEEecCceEEEEeec
Confidence 15677788866 99999999999 899999999999999986
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=214.28 Aligned_cols=201 Identities=16% Similarity=0.241 Sum_probs=169.2
Q ss_pred cceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018322 68 PCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDD 147 (358)
Q Consensus 68 P~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (358)
+..++.|-|++ .+|++|+ .++.|.||++.
T Consensus 15 ~v~~i~~sp~~-----------~~la~~~-----~~g~v~iwd~~----------------------------------- 43 (814)
T 3mkq_A 15 RVKGIDFHPTE-----------PWVLTTL-----YSGRVEIWNYE----------------------------------- 43 (814)
T ss_dssp CEEEEEECSSS-----------SEEEEEE-----TTSEEEEEETT-----------------------------------
T ss_pred ceEEEEECCCC-----------CEEEEEe-----CCCEEEEEECC-----------------------------------
Confidence 46688888875 4788887 45689999872
Q ss_pred cCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC
Q 018322 148 EEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (358)
Q Consensus 148 ~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (358)
.......+..|.+.|+++.|+|++ .+||+++.||.|+|||+.. ...+..+.+
T Consensus 44 ------~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~---------------------~~~~~~~~~ 95 (814)
T 3mkq_A 44 ------TQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNT---------------------GEKVVDFEA 95 (814)
T ss_dssp ------TTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTT---------------------CCEEEEEEC
T ss_pred ------CCceEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEEec
Confidence 333445666899999999999999 7999999999999999987 567788899
Q ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC-CCCCEEEEEECCCcEEEEEC
Q 018322 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD~ 306 (358)
|...|++++|+|++. +|++|+.||.|++|++.+..... ..+.+|...|.+++|+| ++. .|++++.||.|++||+
T Consensus 96 ~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~ 170 (814)
T 3mkq_A 96 HPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALE---QTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSL 170 (814)
T ss_dssp CSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEE---EEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEET
T ss_pred CCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEE---EEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEEC
Confidence 999999999999998 99999999999999997643322 56778999999999999 555 9999999999999999
Q ss_pred CCCCCeeEEEec-CCCCeEEEEEeC--CCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 307 RVGKSALTSFKA-HNADVNVISWNR--LASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 307 r~~~~~~~~~~~-h~~~V~~i~~~p--~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+.+. +...+.. |...|++++|+| ++ .+|++|+.||.|++||+++.+
T Consensus 171 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 171 GQST-PNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKS 219 (814)
T ss_dssp TCSS-CSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTE
T ss_pred CCCc-ceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc
Confidence 8854 4455544 448899999999 78 899999999999999998754
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=193.32 Aligned_cols=167 Identities=12% Similarity=0.041 Sum_probs=131.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE-cCCCCCeEEEEeCC--CC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-GGHKDEGYAIDWNP--IT 241 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~s~--~~ 241 (358)
.+.|+++.++|. +++++.|++|++|+........... ....+..+ .+|...|.+++|+| ++
T Consensus 76 ~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (343)
T 3lrv_A 76 TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSK------------TNKVLREIEVDSANEIIYMYGHNEVNT 139 (343)
T ss_dssp EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETT------------TCCEEEEEECCCSSCEEEEECCC---C
T ss_pred cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecC------------CcceeEEeecCCCCCEEEEEcCCCCCC
Confidence 467888888886 8999999999999987632211110 12323333 36778999999999 88
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCcc-ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec-C
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA-H 319 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~-h 319 (358)
. +|++|+.||+|++||++++.. . ..+ ..|...|.+++|+|++. +|++|+.||.|+|||++++......+.. |
T Consensus 140 ~-~l~s~s~dg~i~~wd~~~~~~-~---~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h 213 (343)
T 3lrv_A 140 E-YFIWADNRGTIGFQSYEDDSQ-Y---IVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDE 213 (343)
T ss_dssp C-EEEEEETTCCEEEEESSSSCE-E---EEECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCT
T ss_pred C-EEEEEeCCCcEEEEECCCCcE-E---EEEecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccC
Confidence 7 999999999999999987433 2 222 23566899999999998 9999999999999999996533367777 9
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
...|++++|+|++ .+|++|++ +.|+|||+++.+.
T Consensus 214 ~~~v~~l~fs~~g-~~l~s~~~-~~v~iwd~~~~~~ 247 (343)
T 3lrv_A 214 EAKIKEVKFADNG-YWMVVECD-QTVVCFDLRKDVG 247 (343)
T ss_dssp TSCEEEEEECTTS-SEEEEEES-SBEEEEETTSSTT
T ss_pred CCCEEEEEEeCCC-CEEEEEeC-CeEEEEEcCCCCc
Confidence 9999999999999 89999994 5999999998764
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-23 Score=191.50 Aligned_cols=208 Identities=17% Similarity=0.295 Sum_probs=162.1
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|.|+... ..+|++|+ .++.|.||++..
T Consensus 39 ~~~v~~~~~~~~~~~--------g~~l~~~~-----~dg~i~iw~~~~-------------------------------- 73 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLP--------GNFLIAGS-----WANDVRCWEVQD-------------------------------- 73 (368)
T ss_dssp SSCEEEEEECCTTSS--------SEEEEEEE-----TTSEEEEEEECT--------------------------------
T ss_pred CCceEEEEEcCCCCC--------ceEEEEEC-----CCCcEEEEEcCC--------------------------------
Confidence 456778889887310 15788887 456899999831
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
....+.....+|.+.|++++|+|++ .+|++++.||.|++||+.. .. ...+
T Consensus 74 -------~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~---------------------~~-~~~~ 123 (368)
T 3mmy_A 74 -------SGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSS---------------------NQ-AIQI 123 (368)
T ss_dssp -------TSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TE-EEEE
T ss_pred -------CCceeEEEeccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCC---------------------CC-ceee
Confidence 0223435677899999999999988 7999999999999999987 23 2346
Q ss_pred cCCCCCeEEEEe--CCCCCCeEEEEeCCCcEEEEecCCCCCcc-------------------------------------
Q 018322 226 GGHKDEGYAIDW--NPITTGRLVTGDCNSCIYLWEPASDATWN------------------------------------- 266 (358)
Q Consensus 226 ~~h~~~v~~l~~--s~~~~~~l~sgs~dg~I~lwd~~~~~~~~------------------------------------- 266 (358)
.+|...|++++| ++++. +|++|+.||.|++||+++.....
T Consensus 124 ~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (368)
T 3mmy_A 124 AQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPS 202 (368)
T ss_dssp EECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE
T ss_pred ccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccc
Confidence 679999999999 88887 89999999999999987642100
Q ss_pred -------------------------------------------------cCCCccccCCC------------cEEEEEEC
Q 018322 267 -------------------------------------------------VDPNPFIGHSA------------SVEDLQWS 285 (358)
Q Consensus 267 -------------------------------------------------~~~~~~~~h~~------------~V~~v~~s 285 (358)
.....+.+|.. .|.+++|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (368)
T 3mmy_A 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH 282 (368)
T ss_dssp EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence 00011223443 69999999
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 286 p~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
|++. +|++|+.||.|++||++++ .++..+..|...|++++|+|++ .+|++|+.|+..+.|++..
T Consensus 283 p~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~g-~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 283 PVHG-TLATVGSDGRFSFWDKDAR-TKLKTSEQLDQPISACCFNHNG-NIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp TTTC-CEEEEETTSCEEEEETTTT-EEEEECCCCSSCEEEEEECTTS-SCEEEEECCCSTTCGGGCC
T ss_pred cCCC-EEEEEccCCeEEEEECCCC-cEEEEecCCCCCceEEEECCCC-CeEEEEecccccccccccC
Confidence 9998 8999999999999999984 5778888999999999999999 8999999888666655543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-23 Score=187.94 Aligned_cols=207 Identities=16% Similarity=0.138 Sum_probs=158.5
Q ss_pred CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (358)
Q Consensus 67 wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
=+..++.|.|++ .+|++|+ .++.|.||++..-
T Consensus 12 ~~v~~~~~s~~~-----------~~l~~~~-----~d~~v~iw~~~~~-------------------------------- 43 (342)
T 1yfq_A 12 DYISDIKIIPSK-----------SLLLITS-----WDGSLTVYKFDIQ-------------------------------- 43 (342)
T ss_dssp SCEEEEEEEGGG-----------TEEEEEE-----TTSEEEEEEEETT--------------------------------
T ss_pred CcEEEEEEcCCC-----------CEEEEEc-----CCCeEEEEEeCCC--------------------------------
Confidence 356688898874 3777776 4569999998410
Q ss_pred ccCCCCCCCeEEEEEecCCCceeEEEEcCCCCc-EEEEEeCCCcEEEEeC-CCCccccccccccccCCCCCCCCCCCcEE
Q 018322 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPH-ICASWADTGHVQVWDL-RSHLNALAESETIVGQGAPQVSNQSPLVK 224 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~-~lat~s~dg~V~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (358)
...........|.+.|++++|+|++ . +|++|+.||.|++||+ .. .....
T Consensus 44 ------~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~----------------------~~~~~ 94 (342)
T 1yfq_A 44 ------AKNVDLLQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGS----------------------PSFQA 94 (342)
T ss_dssp ------TTEEEEEEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSS----------------------SSEEE
T ss_pred ------CccccceeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccC----------------------CceEe
Confidence 0112224456899999999999998 7 8999999999999999 65 22355
Q ss_pred EcC--CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCC---------CCCccc--------------------------
Q 018322 225 FGG--HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPAS---------DATWNV-------------------------- 267 (358)
Q Consensus 225 ~~~--h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~---------~~~~~~-------------------------- 267 (358)
+.+ |...|.+++|+| +. +|++|+.|+.|++||+++ ......
T Consensus 95 ~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i 172 (342)
T 1yfq_A 95 LTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQV 172 (342)
T ss_dssp CBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEE
T ss_pred ccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeE
Confidence 666 888888888888 55 888888888888888754 210000
Q ss_pred ------------CCCccccCCCcEEEEEECC-CCCCEEEEEECCCcEEEEECCCC-----CCeeEEEecCCC--------
Q 018322 268 ------------DPNPFIGHSASVEDLQWSP-TEPDVFASCSVDGHIAIWDTRVG-----KSALTSFKAHNA-------- 321 (358)
Q Consensus 268 ------------~~~~~~~h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD~r~~-----~~~~~~~~~h~~-------- 321 (358)
.......|...|.+++|+| ++. +|++++.||.|++|+++.. ......+..|..
T Consensus 173 ~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (342)
T 1yfq_A 173 QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLA 251 (342)
T ss_dssp EEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSC
T ss_pred EEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccc
Confidence 0011234677899999999 888 9999999999999999885 356777877765
Q ss_pred -CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 322 -DVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 322 -~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.|++++|+|++ .+|++|+.||.|++||+++++
T Consensus 252 ~~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 252 YPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp CCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE
T ss_pred eeEEEEEEcCCC-CEEEEecCCceEEEEcCccHh
Confidence 99999999999 899999999999999998764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-23 Score=188.27 Aligned_cols=225 Identities=13% Similarity=0.190 Sum_probs=173.9
Q ss_pred HhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCC
Q 018322 58 NSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSES 137 (358)
Q Consensus 58 ~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (358)
..+..+...-+..++.|.|++ .+|++|+.......+.|.+|++..........
T Consensus 107 ~~~~~~~~~~~v~~~~~~~~~-----------~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~---------------- 159 (369)
T 3zwl_B 107 QCVATWKSPVPVKRVEFSPCG-----------NYFLAILDNVMKNPGSINIYEIERDSATHELT---------------- 159 (369)
T ss_dssp CEEEEEECSSCEEEEEECTTS-----------SEEEEEECCBTTBCCEEEEEEEEECTTTCCEE----------------
T ss_pred cEEEEeecCCCeEEEEEccCC-----------CEEEEecCCccCCCCEEEEEEecCCccceeec----------------
Confidence 334444556677778887764 46777775433345799999985321111000
Q ss_pred CCCCCCCCCccCCCCCCCeEEEEEecCCC--ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCC
Q 018322 138 SDSDEDSDDDEEGGSGTPILQLRKVAHQG--CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQ 215 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~--~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~ 215 (358)
... ..+. .....|.+ .|.+++|+|++ .+|++++.+|.|++||+..
T Consensus 160 ---------~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~------------------ 206 (369)
T 3zwl_B 160 ---------KVS---EEPI--HKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSN------------------ 206 (369)
T ss_dssp ---------EEC---SSCS--EEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTT------------------
T ss_pred ---------ccc---ccee--eeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCC------------------
Confidence 000 0122 33446666 99999999998 7899999999999999986
Q ss_pred CCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEE
Q 018322 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC 295 (358)
Q Consensus 216 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~ 295 (358)
...++..+..|...|.+++|+|++. +|++++.||.|++||+++... . ..+. +...+.+++|+|++. +++++
T Consensus 207 --~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~-~---~~~~-~~~~~~~~~~~~~~~-~l~~~ 277 (369)
T 3zwl_B 207 --NYEYVDSIDLHEKSISDMQFSPDLT-YFITSSRDTNSFLVDVSTLQV-L---KKYE-TDCPLNTAVITPLKE-FIILG 277 (369)
T ss_dssp --TTEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE-E---EEEE-CSSCEEEEEECSSSS-EEEEE
T ss_pred --CcEeEEEEecCCCceeEEEECCCCC-EEEEecCCceEEEEECCCCce-e---eeec-CCCCceeEEecCCCc-eEEEe
Confidence 2456778889999999999999998 999999999999999987432 2 2233 778899999999999 88888
Q ss_pred ECCC--------------cEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 296 SVDG--------------HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 296 s~Dg--------------~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+.++ .|++||++++ .++..+.+|...|++++|+|++ .+|++|+.||.|+||++++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 278 GGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGPLNTVAISPQG-TSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ECCC-------------CEEEEEETTTC-CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEEECHH
T ss_pred ecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCcEEEEEECCCC-CEEEEEcCCCeEEEEECccc
Confidence 8888 8999999985 5778889999999999999999 89999999999999999753
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-23 Score=189.64 Aligned_cols=168 Identities=8% Similarity=0.035 Sum_probs=131.7
Q ss_pred EEEEEecCCCceeEEEEcC--CCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeE
Q 018322 157 LQLRKVAHQGCVNRIRAMT--QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGY 233 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p--~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~ 233 (358)
+.....+|.+.|+++.|+| ++ .++++++.||+|++||+.. ......+. .|...+.
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~---------------------~~~~~~~~~~~~~~i~ 174 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYED---------------------DSQYIVHSAKSDVEYS 174 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSS---------------------SCEEEEECCCSSCCCC
T ss_pred eEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCC---------------------CcEEEEEecCCCCceE
Confidence 4445557889999999999 88 7999999999999999987 34444443 3455899
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (358)
+++|+|++. +|++|+.||.|++||++++... ...+.+ |...|.+++|+|++. +|++++ ++.|++||++... +
T Consensus 175 ~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~fs~~g~-~l~s~~-~~~v~iwd~~~~~-~ 247 (343)
T 3lrv_A 175 SGVLHKDSL-LLALYSPDGILDVYNLSSPDQA---SSRFPVDEEAKIKEVKFADNGY-WMVVEC-DQTVVCFDLRKDV-G 247 (343)
T ss_dssp EEEECTTSC-EEEEECTTSCEEEEESSCTTSC---CEECCCCTTSCEEEEEECTTSS-EEEEEE-SSBEEEEETTSST-T
T ss_pred EEEECCCCC-EEEEEcCCCEEEEEECCCCCCC---ccEEeccCCCCEEEEEEeCCCC-EEEEEe-CCeEEEEEcCCCC-c
Confidence 999999998 9999999999999999885432 134566 999999999999998 899999 5599999999854 3
Q ss_pred eEEEe---cCCCCeE--EEEEeCCCCcEEEEEeC-CCCEEEEeCCCCC
Q 018322 313 LTSFK---AHNADVN--VISWNRLASCLLASGSD-DGTFSIHDLRLLK 354 (358)
Q Consensus 313 ~~~~~---~h~~~V~--~i~~~p~~~~~lasgs~-Dg~i~iwDlr~~~ 354 (358)
+..+. .|...+. +++|+|++ .+|++|+. |+.|+||++.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 248 TLAYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp CBSSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEECTTT
T ss_pred ceeecccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEEcccc
Confidence 33322 2444444 69999999 89999888 9999999986554
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.5e-23 Score=196.66 Aligned_cols=170 Identities=22% Similarity=0.274 Sum_probs=143.9
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.....+.+|.+.|+++.|+|++ ++++|+.||+|++||+.. ...+..+.+|...|.++
T Consensus 153 ~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~---------------------~~~~~~~~~h~~~v~~l 209 (464)
T 3v7d_B 153 KFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKK---------------------GCCTHVFEGHNSTVRCL 209 (464)
T ss_dssp EEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEE
T ss_pred cEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCC---------------------CcEEEEECCCCCccEEE
Confidence 4445667899999999999977 899999999999999987 46677889999999999
Q ss_pred EeCC--CCCCeEEEEeCCCcEEEEecCCCCCccc-------------------CCCccccCCCcEEEEEECCCCCCEEEE
Q 018322 236 DWNP--ITTGRLVTGDCNSCIYLWEPASDATWNV-------------------DPNPFIGHSASVEDLQWSPTEPDVFAS 294 (358)
Q Consensus 236 ~~s~--~~~~~l~sgs~dg~I~lwd~~~~~~~~~-------------------~~~~~~~h~~~V~~v~~sp~~~~~las 294 (358)
+|++ ++. +|++|+.||.|++||+++...... ....+.+|...|.++. +++. ++++
T Consensus 210 ~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~~ 285 (464)
T 3v7d_B 210 DIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGN-IVVS 285 (464)
T ss_dssp EEEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EETT-EEEE
T ss_pred EEecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCCC-EEEE
Confidence 9995 455 899999999999999987432110 0124567888888874 5566 9999
Q ss_pred EECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 295 CSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 295 ~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|+.||.|++||++++ .++..+.+|...|.+++|+|++ .+|++|+.||.|++||+++++
T Consensus 286 ~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 286 GSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp EETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTE
T ss_pred EeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Confidence 999999999999984 5778889999999999999999 899999999999999998764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-23 Score=192.74 Aligned_cols=220 Identities=14% Similarity=0.159 Sum_probs=164.7
Q ss_pred cCcceeEEEEec----cCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRD----TLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSD 141 (358)
Q Consensus 66 ~wP~ls~~~~~d----~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (358)
.-+..++.|.|+ +.. ..+|++|+ .++.|.||++.....
T Consensus 62 ~~~v~~~~~~~~~~~~g~~--------~~~l~s~~-----~dg~i~iw~~~~~~~------------------------- 103 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDAFE--------LCLVATTS-----FSGDLLFYRITREDE------------------------- 103 (397)
T ss_dssp TTCEEEEEEEEEEETTTEE--------EEEEEEEE-----TTSCEEEEEEEECTT-------------------------
T ss_pred CCcEEEEEEecccccCCcc--------ccEEEEEc-----CCCCEEEEEccCCcc-------------------------
Confidence 446778888887 200 13677776 456899999852100
Q ss_pred CCCCCccCCCCCCCeEEEEEecC-----CCceeEEEEc----CCCCcE-EEEEeCCCcEEEEeCCCCccccccccccccC
Q 018322 142 EDSDDDEEGGSGTPILQLRKVAH-----QGCVNRIRAM----TQNPHI-CASWADTGHVQVWDLRSHLNALAESETIVGQ 211 (358)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~H-----~~~V~~i~~~----p~~~~~-lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~ 211 (358)
........+..| .+.|+++.|+ |++ .+ |++++.||.|++||+..........
T Consensus 104 -----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~------ 165 (397)
T 1sq9_A 104 -----------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFADESNSL------ 165 (397)
T ss_dssp -----------TCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHT------
T ss_pred -----------cccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccccccccc------
Confidence 022334566678 5999999999 888 57 9999999999999997611000000
Q ss_pred CCCCCCCCCCcEEE-------cCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcccc---C---CCc
Q 018322 212 GAPQVSNQSPLVKF-------GGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG---H---SAS 278 (358)
Q Consensus 212 ~~~~~~~~~~~~~~-------~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~---h---~~~ 278 (358)
.....+...+ ..|...+++++|+|++ +|++|+.||.|++||+++. ... ..+.. | ...
T Consensus 166 ----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~-~~~---~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 166 ----TLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTL-RPL---YNFESQHSMINNSNS 235 (397)
T ss_dssp ----TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTT-EEE---EEEECCC---CCCCC
T ss_pred ----eeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCC-cee---EEEeccccccccCCc
Confidence 0011222245 4588899999999988 9999999999999999873 322 45666 8 999
Q ss_pred EEEEEECCCCCCEEEEEECC---CcEEEEECCCCCCeeEEEec-------------CCCCeEEEEEeCCCCcEEEEEeCC
Q 018322 279 VEDLQWSPTEPDVFASCSVD---GHIAIWDTRVGKSALTSFKA-------------HNADVNVISWNRLASCLLASGSDD 342 (358)
Q Consensus 279 V~~v~~sp~~~~~las~s~D---g~I~iwD~r~~~~~~~~~~~-------------h~~~V~~i~~~p~~~~~lasgs~D 342 (358)
|.+++|+|++. +|++++.| |.|++||++++ .++..+.. |...|++++|+|++ .+|++|+.|
T Consensus 236 i~~i~~~~~~~-~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 312 (397)
T 1sq9_A 236 IRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWD 312 (397)
T ss_dssp EEEEEECSSTT-EEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETT
T ss_pred cceEEECCCCC-EEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCC
Confidence 99999999988 99999999 99999999985 57777877 99999999999999 899999999
Q ss_pred CCEEEEeCCCCC
Q 018322 343 GTFSIHDLRLLK 354 (358)
Q Consensus 343 g~i~iwDlr~~~ 354 (358)
|.|+|||+++.+
T Consensus 313 g~i~iwd~~~~~ 324 (397)
T 1sq9_A 313 GKLRFWDVKTKE 324 (397)
T ss_dssp SEEEEEETTTTE
T ss_pred CeEEEEEcCCCc
Confidence 999999998764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=211.89 Aligned_cols=212 Identities=21% Similarity=0.301 Sum_probs=170.4
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-|..++.|.|+.. ..+|++|+ .++.|.||++..
T Consensus 53 ~~~V~~l~~s~~~~---------~~~l~s~s-----~Dg~I~vwd~~~-------------------------------- 86 (753)
T 3jro_A 53 EGPVWRVDWAHPKF---------GTILASCS-----YDGKVLIWKEEN-------------------------------- 86 (753)
T ss_dssp SSCEEEEEECCTTS---------CSEEEEEE-----TTSCEEEEEEET--------------------------------
T ss_pred cCceEEEEecCCCC---------CCEEEEEe-----CCCeEEEEECCC--------------------------------
Confidence 45777888887631 14788887 467899999841
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCC--CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQ--NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (358)
..........+|.+.|+++.|+|+ + .++++|+.||.|++||+... ......
T Consensus 87 -------~~~~~~~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~-------------------~~~~~~ 139 (753)
T 3jro_A 87 -------GRWSQIAVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKEN-------------------GTTSPI 139 (753)
T ss_dssp -------TEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSS-------------------SCCCCE
T ss_pred -------CcccccccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecC-------------------CCccee
Confidence 122344566789999999999998 6 79999999999999999872 124455
Q ss_pred EEcCCCCCeEEEEeCCC-------------CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC---
Q 018322 224 KFGGHKDEGYAIDWNPI-------------TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT--- 287 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~-------------~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--- 287 (358)
.+.+|...|.+++|+|. +. +|++|+.||.|++||++...........+.+|...|.+++|+|+
T Consensus 140 ~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 140 IIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp EEECCSSCEEEEEECCCC---------CGGGC-CEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred EeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC
Confidence 67899999999999994 65 99999999999999998754322223567789999999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCCC----eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 288 EPDVFASCSVDGHIAIWDTRVGKS----ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 288 ~~~~las~s~Dg~I~iwD~r~~~~----~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+. +|++|+.||.|++||++.+.. .+.....|...|++++|+|++ .+|++|+.||.|++||++..
T Consensus 219 ~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 219 RS-YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SE-EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTT-CCEEEECSSSCEECCBCCSS
T ss_pred CC-EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCC-CEEEEEcCCCEEEEEecCCC
Confidence 66 999999999999999998532 222335688899999999999 89999999999999999853
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-23 Score=208.84 Aligned_cols=204 Identities=20% Similarity=0.324 Sum_probs=170.2
Q ss_pred ccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 65 IGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDS 144 (358)
Q Consensus 65 ~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (358)
..-|..++.|.|++ .+|++|+ .++.|.||++.
T Consensus 54 ~~~~v~~~~~s~~~-----------~~l~~~~-----~dg~i~vw~~~-------------------------------- 85 (814)
T 3mkq_A 54 TETPVRAGKFIARK-----------NWIIVGS-----DDFRIRVFNYN-------------------------------- 85 (814)
T ss_dssp CSSCEEEEEEEGGG-----------TEEEEEE-----TTSEEEEEETT--------------------------------
T ss_pred CCCcEEEEEEeCCC-----------CEEEEEe-----CCCeEEEEECC--------------------------------
Confidence 34577889999985 4788887 35699999873
Q ss_pred CCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE
Q 018322 145 DDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224 (358)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (358)
.......+.+|.+.|++++|+|++ .+|++++.||.|++||+.. .......
T Consensus 86 ---------~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~--------------------~~~~~~~ 135 (814)
T 3mkq_A 86 ---------TGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWEN--------------------NWALEQT 135 (814)
T ss_dssp ---------TCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGG--------------------TSEEEEE
T ss_pred ---------CCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCC--------------------CceEEEE
Confidence 222335567899999999999999 6899999999999999976 2355667
Q ss_pred EcCCCCCeEEEEeCC-CCCCeEEEEeCCCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECC--CCCCEEEEEECCCc
Q 018322 225 FGGHKDEGYAIDWNP-ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSP--TEPDVFASCSVDGH 300 (358)
Q Consensus 225 ~~~h~~~v~~l~~s~-~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp--~~~~~las~s~Dg~ 300 (358)
+.+|...+.+++|+| ++. +|++|+.||.|++||+...... ..+.. |...|.+++|+| ++. +|++++.||.
T Consensus 136 ~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~ 209 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPN----FTLTTGQERGVNYVDYYPLPDKP-YMITASDDLT 209 (814)
T ss_dssp EECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSSCS----EEEECCCTTCCCEEEECCSTTCC-EEEEECTTSE
T ss_pred EcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcce----eEEecCCCCCEEEEEEEECCCCC-EEEEEeCCCE
Confidence 889999999999999 665 9999999999999999764332 23333 448899999999 777 9999999999
Q ss_pred EEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 301 IAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 301 I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|++||++++ .++..+..|...|++++|+|++ .+|++|+.||.|++||+++++
T Consensus 210 i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 210 IKIWDYQTK-SCVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYK 261 (814)
T ss_dssp EEEEETTTT-EEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCS
T ss_pred EEEEECCCC-cEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc
Confidence 999999984 5777888999999999999999 899999999999999998754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=191.75 Aligned_cols=124 Identities=15% Similarity=0.333 Sum_probs=106.6
Q ss_pred EEEecCCCceeEEEEcCCC--CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc-EEEcCCCCCeEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQN--PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL-VKFGGHKDEGYAI 235 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l 235 (358)
..+.+|.+.|++++|+|++ ..+||+|+.||.|+|||+... ...+ ..+.+|...|+++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~--------------------~~~~~~~~~~h~~~v~~~ 92 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS--------------------GQTIPKAQQMHTGPVLDV 92 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT--------------------SCEEEEEEEECSSCEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC--------------------CceeEEEeccccCCEEEE
Confidence 4567899999999999984 479999999999999999861 2333 6788899999999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEE--CCCCCCEEEEEECCCcEEEEECCCC
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQW--SPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~--sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
+|+|++. +|++|+.||.|++||+.+.. . ..+.+|...|.+++| +|++. +|++|+.||.|++||++++
T Consensus 93 ~~~~~~~-~l~s~~~dg~v~iwd~~~~~-~----~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 93 CWSDDGS-KVFTASCDKTAKMWDLSSNQ-A----IQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp EECTTSS-EEEEEETTSEEEEEETTTTE-E----EEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCS
T ss_pred EECcCCC-EEEEEcCCCcEEEEEcCCCC-c----eeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCC
Confidence 9999998 99999999999999998743 2 235679999999999 88887 8999999999999999864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-23 Score=189.76 Aligned_cols=174 Identities=16% Similarity=0.256 Sum_probs=142.2
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeC---CCcEEEEeCCCCccccccccccccCCCCCCCCCCCc-EEEcCCC
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL-VKFGGHK 229 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~ 229 (358)
..++.....+|.+.|++++|+|+++.++++|+. ||.|+|||+.. .... ....+|.
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~---------------------~~~~~~~~~~~~ 65 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH---------------------GDLKLLREIEKA 65 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS---------------------SSEEEEEEEEES
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC---------------------Ccccceeeeccc
Confidence 445556677899999999999999778888887 99999999986 2222 2234788
Q ss_pred CCeEEEEeCCC---CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEE------CCCCCCEEEEEECCCc
Q 018322 230 DEGYAIDWNPI---TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQW------SPTEPDVFASCSVDGH 300 (358)
Q Consensus 230 ~~v~~l~~s~~---~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~------sp~~~~~las~s~Dg~ 300 (358)
..|++++|+|+ +. +|++|+.||.|++||+.+.... ...+.+|...|.+++| +|++. +|++|+.||.
T Consensus 66 ~~v~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~ 140 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQR-YLATGDFGGNLHIWNLEAPEMP---VYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGT 140 (357)
T ss_dssp SCEEEEECTTCCTTTC-CEEEEETTSCEEEECTTSCSSC---SEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSC
T ss_pred CcEEEEEEcCCCCCCc-eEEEecCCCeEEEEeCCCCCcc---EEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCe
Confidence 99999999998 46 9999999999999999875422 3567789999999954 67887 9999999999
Q ss_pred EEEEECCCCCCeeEEEecCCC----CeEEEE----EeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 301 IAIWDTRVGKSALTSFKAHNA----DVNVIS----WNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 301 I~iwD~r~~~~~~~~~~~h~~----~V~~i~----~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|++||++.+..++..+..|.. .|++++ |+|++ .+|++|+.||.|++||+++.+
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~ 201 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMA 201 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTE
T ss_pred EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCc
Confidence 999999986557777766554 799998 67888 899999999999999998765
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.4e-23 Score=186.07 Aligned_cols=167 Identities=12% Similarity=0.120 Sum_probs=126.2
Q ss_pred EEEEEecCCCceeEEEEcC---CCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC---C
Q 018322 157 LQLRKVAHQGCVNRIRAMT---QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK---D 230 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p---~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~ 230 (358)
.......|...++.++|++ ++ .+||+++.|++|+|||+.+ ++.+.++.+|. .
T Consensus 170 ~~~s~~~~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~T---------------------Gk~l~tL~g~~~~v~ 227 (356)
T 2w18_A 170 GKENQFLMPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKT---------------------GQLLKKMHIDDSYQA 227 (356)
T ss_dssp EEEEEEECCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTT---------------------CCEEEEEECCC---C
T ss_pred eeeeeccCCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCC---------------------CcEEEEEcCCCccee
Confidence 3345668899999999988 44 7999999999999999987 67778887654 3
Q ss_pred CeEEEEeCCCCCCeE------------EEEeCCCcEEEEecCCCCCcccCCCc-cccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 231 EGYAIDWNPITTGRL------------VTGDCNSCIYLWEPASDATWNVDPNP-FIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l------------~sgs~dg~I~lwd~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
.+.+++|+|++. ++ ++|+.|++|++||+.++....+.... -.+|...+.+..++ +. ++|+|+.
T Consensus 228 ~v~~vafSpdG~-~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~ 303 (356)
T 2w18_A 228 SVCHKAYSEMGL-LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILT 303 (356)
T ss_dssp CCEEEEEEETTE-EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEET
T ss_pred eeEEEEECCCCC-EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcC
Confidence 677889999886 54 67889999999999763221100000 13676666655555 55 8999999
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeE-EEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVN-VISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~-~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
|++|+|||++++ +++.++.+|...+. +++|+|++ .+|+||+.|++|+|||+.
T Consensus 304 DgTIkIWDl~tG-k~l~tL~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 304 SGTIAIWDLLLG-QCTALLPPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp TSCEEEEETTTC-SEEEEECCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEEC
T ss_pred CCcEEEEECCCC-cEEEEecCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecCC
Confidence 999999999985 58888988877655 68999999 999999999999999963
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=197.83 Aligned_cols=215 Identities=14% Similarity=0.161 Sum_probs=158.8
Q ss_pred CcceeEEEEe-ccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 67 WPCLSFDIVR-DTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 67 wP~ls~~~~~-d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
-+..++.|.| ++ .+|++|+ .++.|.||++..+.....
T Consensus 64 ~~V~~~~~s~~~~-----------~~l~s~s-----~dg~v~vwd~~~~~~~~~-------------------------- 101 (437)
T 3gre_A 64 NSITSSAVSPGET-----------PYLITGS-----DQGVIKIWNLKEIIVGEV-------------------------- 101 (437)
T ss_dssp SCEEEEEEECSSS-----------CEEEEEE-----TTSEEEEEEHHHHHTTCC--------------------------
T ss_pred CceEEEEECCCCC-----------CEEEEec-----CCceEEEeECcccccCcc--------------------------
Confidence 4677888888 64 4788887 567999999853211000
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc--ccccccccccCCCCCCCCCCCcE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN--ALAESETIVGQGAPQVSNQSPLV 223 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 223 (358)
..+.+ ...|.+.|++++|+|++ .+|++++.||+|+|||+..... ..... ...++.
T Consensus 102 -------~~~~~---~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~------------~~~~i~ 158 (437)
T 3gre_A 102 -------YSSSL---TYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKFL------------NCECIR 158 (437)
T ss_dssp -------CSCSE---EEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEEE------------EEEEEE
T ss_pred -------cceee---eccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeecc------------ccceeE
Confidence 01222 23599999999999988 7999999999999999952100 00000 001122
Q ss_pred EEc--C--CCCCeEEEE--eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcccc--CCCcEEEEEECCCCCCEEEEE
Q 018322 224 KFG--G--HKDEGYAID--WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG--HSASVEDLQWSPTEPDVFASC 295 (358)
Q Consensus 224 ~~~--~--h~~~v~~l~--~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~las~ 295 (358)
.+. . +...+.++. +++++. +|++|+.||.|++||+++... . ..+.+ |...|.+++|+|++. +|++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~-~---~~~~~~~h~~~v~~~~~s~~~~-~l~s~ 232 (437)
T 3gre_A 159 KINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLER-L---QIIENSPRHGAVSSICIDEECC-VLILG 232 (437)
T ss_dssp EEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCCE-E---EEEECCGGGCCEEEEEECTTSC-EEEEE
T ss_pred EEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCee-e---EEEccCCCCCceEEEEECCCCC-EEEEE
Confidence 221 1 455677777 667777 999999999999999987432 2 45555 889999999999988 99999
Q ss_pred ECCCcEEEEECCCCCCeeEEEe-cCCCCeEEEEEeC----CCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 296 SVDGHIAIWDTRVGKSALTSFK-AHNADVNVISWNR----LASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 296 s~Dg~I~iwD~r~~~~~~~~~~-~h~~~V~~i~~~p----~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+.||.|++||++.+ .++..+. .|...|++++|+| ++ .+|++|+.||.|+|||+++++
T Consensus 233 ~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 233 TTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp ETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTE
T ss_pred cCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCc
Confidence 99999999999984 5666665 7888999997775 45 799999999999999998765
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-22 Score=188.26 Aligned_cols=169 Identities=22% Similarity=0.381 Sum_probs=146.0
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
..+...+|.+.|++|+|+|++ .+||+|+.||+|+|||+.. .+.+..+.+|...+.+++
T Consensus 139 ~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~---------------------~~~~~~~~~h~~~v~~~s 196 (420)
T 4gga_A 139 QLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQ---------------------QKRLRNMTSHSARVGSLS 196 (420)
T ss_dssp EEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEE
T ss_pred EEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCC---------------------CcEEEEEeCCCCceEEEe
Confidence 335566788999999999999 7999999999999999987 567788999999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC---ee
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS---AL 313 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~---~~ 313 (358)
|++ . +|++|+.|+.+++||........ ..+.+|...+..+.|+|.+. ++++++.|+.|++||.+.+.. .+
T Consensus 197 ~~~--~-~l~sgs~d~~i~~~d~~~~~~~~---~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~ 269 (420)
T 4gga_A 197 WNS--Y-ILSSGSRSGHIHHHDVRVAEHHV---ATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPL 269 (420)
T ss_dssp EET--T-EEEEEETTSEEEEEETTSSSCEE---EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCS
T ss_pred eCC--C-EEEEEeCCCceeEeeecccceee---EEecccccceeeeeecCCCC-eeeeeeccccceEEeeccccccceee
Confidence 964 3 99999999999999997744333 56788999999999999998 999999999999999987542 45
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEE--eCCCCEEEEeCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASG--SDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasg--s~Dg~i~iwDlr~~~ 354 (358)
.....|...|.+++|+|.+..+++++ +.|++|+|||+++++
T Consensus 270 ~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~ 312 (420)
T 4gga_A 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 312 (420)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE
T ss_pred eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc
Confidence 66788999999999999987888775 479999999998764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=199.83 Aligned_cols=174 Identities=14% Similarity=0.158 Sum_probs=146.3
Q ss_pred EEEEecCCCc-eeEEEEcC--CCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 158 QLRKVAHQGC-VNRIRAMT--QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 158 ~~~~~~H~~~-V~~i~~~p--~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
...+.+|.+. |++++|+| ++ .+||+++.||.|+|||+......... ....+..+.+|...|.+
T Consensus 56 ~~~~~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~-------------~~~~~~~~~~~~~~v~~ 121 (615)
T 1pgu_A 56 VVQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDKESNSV-------------EVNVKSEFQVLAGPISD 121 (615)
T ss_dssp EEEECTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEGGGTEE-------------EEEEEEEEECCSSCEEE
T ss_pred ceEEecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCCCcccccc-------------cccccchhhcccccEEE
Confidence 3567789999 99999999 88 79999999999999999641000000 02455678889999999
Q ss_pred EEeCCCCCCeEEEEeCC----CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 235 IDWNPITTGRLVTGDCN----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
++|+|++. +|++++.+ +.|++||.. .. ...+.+|...|.+++|+|++..+|++++.|+.|++||++..
T Consensus 122 ~~~s~~~~-~l~~~~~~~~~~~~v~~~d~~---~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~- 193 (615)
T 1pgu_A 122 ISWDFEGR-RLCVVGEGRDNFGVFISWDSG---NS---LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF- 193 (615)
T ss_dssp EEECTTSS-EEEEEECCSSCSEEEEETTTC---CE---EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-
T ss_pred EEEeCCCC-EEEEeccCCCCccEEEEEECC---Cc---ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-
Confidence 99999998 99999887 799999842 22 25677899999999999999878999999999999999874
Q ss_pred CeeEEEecCCC---CeEEEEEeCC-CCcEEEEEeCCCCEEEEeCCCCC
Q 018322 311 SALTSFKAHNA---DVNVISWNRL-ASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 311 ~~~~~~~~h~~---~V~~i~~~p~-~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.++..+..|.. .|++++|+|+ + .+|++|+.||.|++||+++.+
T Consensus 194 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 194 KFSASDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEEEECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCC
T ss_pred ceeeeecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCC
Confidence 57778888998 9999999999 7 899999999999999998765
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-22 Score=183.81 Aligned_cols=163 Identities=17% Similarity=0.210 Sum_probs=121.2
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC----
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT---- 242 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~---- 242 (358)
.+..+.+.+.+..++++++.+++|+|||+... +++..+. |...|.+++|+++..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~---------------------~~~~~~~-~~~~v~~v~~~~~~~~~~~ 117 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK---------------------QDVSRIK-VDAPVKDLFLSREFIVVSY 117 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTT---------------------EEEEEEE-CSSCEEEEEECSSEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCC---------------------cEEEEEE-CCCceEEEEEcCCEEEEEE
Confidence 58888898888556677888999999998762 2222222 222333333333210
Q ss_pred ------------------------------CeEEE--EeCCCcEEEEecCCCCCcc-----------cC-CCccccCCCc
Q 018322 243 ------------------------------GRLVT--GDCNSCIYLWEPASDATWN-----------VD-PNPFIGHSAS 278 (358)
Q Consensus 243 ------------------------------~~l~s--gs~dg~I~lwd~~~~~~~~-----------~~-~~~~~~h~~~ 278 (358)
.+++. |+.+|.|++||+++..... .. ...+.+|...
T Consensus 118 ~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~ 197 (355)
T 3vu4_A 118 GDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP 197 (355)
T ss_dssp TTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSC
T ss_pred cCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCc
Confidence 14554 5788999999987643100 01 3557889999
Q ss_pred EEEEEECCCCCCEEEEEECCCc-EEEEECCCCCCeeEEEe-c-CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 279 VEDLQWSPTEPDVFASCSVDGH-IAIWDTRVGKSALTSFK-A-HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~-I~iwD~r~~~~~~~~~~-~-h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|.+++|+|++. +||+|+.||+ |+|||++++ .++..+. + |...|++++|+|++ .+|++|+.|++|+|||++...
T Consensus 198 v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~-~~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 198 IKMVRLNRKSD-MVATCSQDGTIIRVFKTEDG-VLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEEECTTSS-EEEEEETTCSEEEEEETTTC-CEEEEEECTTCCSCEEEEEECTTS-CEEEEEETTCEEEEEESSCCS
T ss_pred eEEEEECCCCC-EEEEEeCCCCEEEEEECCCC-cEEEEEEcCCCCCcEEEEEECCCC-CEEEEEECCCEEEEEEccCCC
Confidence 99999999998 9999999998 999999985 5777776 4 99999999999999 999999999999999998653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-22 Score=189.34 Aligned_cols=187 Identities=17% Similarity=0.198 Sum_probs=143.6
Q ss_pred eEEEEEecCCCceeEEEEcC--CCCcEEEEEeCCCcEEEEeCCCCcccccccccccc--CCCCCCCCCCCcEEEcCCCCC
Q 018322 156 ILQLRKVAHQGCVNRIRAMT--QNPHICASWADTGHVQVWDLRSHLNALAESETIVG--QGAPQVSNQSPLVKFGGHKDE 231 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p--~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~ 231 (358)
.....+.+|.+.|+++.|++ ++ .++++|+.||+|++||+............... ...........+..+.+|...
T Consensus 194 ~~~~~~~~h~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (464)
T 3v7d_B 194 CCTHVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272 (464)
T ss_dssp EEEEEECCCSSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred cEEEEECCCCCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence 34456678999999999995 44 79999999999999999873221110000000 000000011235678899999
Q ss_pred eEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 232 v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
+.++. +++. +|++|+.||.|++||+++. ... ..+.+|...|.+++|+|++. .+++|+.||.|++||++++ .
T Consensus 273 v~~~~--~~~~-~l~~~~~d~~i~vwd~~~~-~~~---~~~~~~~~~v~~~~~~~~~~-~l~sg~~dg~i~vwd~~~~-~ 343 (464)
T 3v7d_B 273 VRTVS--GHGN-IVVSGSYDNTLIVWDVAQM-KCL---YILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENG-E 343 (464)
T ss_dssp EEEEE--EETT-EEEEEETTSCEEEEETTTT-EEE---EEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTT-E
T ss_pred EEEEc--CCCC-EEEEEeCCCeEEEEECCCC-cEE---EEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-c
Confidence 98884 5565 9999999999999999873 322 56778999999999999998 9999999999999999985 5
Q ss_pred eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 312 ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 312 ~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
++..+.+|...|++++|++ .+|++|+.||.|++||+++...
T Consensus 344 ~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 344 LMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSR 384 (464)
T ss_dssp EEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCce
Confidence 8888899999999999983 7899999999999999998653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-21 Score=175.48 Aligned_cols=196 Identities=16% Similarity=0.220 Sum_probs=159.0
Q ss_pred CcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 67 WPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (358)
Q Consensus 67 wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
-+..++.| |++ .+|++|+ .++.|.||++.
T Consensus 19 ~~v~~~~~-~~~-----------~~l~s~~-----~dg~v~vw~~~---------------------------------- 47 (313)
T 3odt_A 19 QDVRDVVA-VDD-----------SKVASVS-----RDGTVRLWSKD---------------------------------- 47 (313)
T ss_dssp SCEEEEEE-EET-----------TEEEEEE-----TTSEEEEEEES----------------------------------
T ss_pred CCcEEEEe-cCC-----------CEEEEEE-----cCCcEEEEECC----------------------------------
Confidence 35567777 664 3678887 56799999883
Q ss_pred ccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc
Q 018322 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
..........|.+.|++++|+|++ .++++++.||.|++|++.... ...++..+.
T Consensus 48 -------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~------------------~~~~~~~~~ 101 (313)
T 3odt_A 48 -------DQWLGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATS------------------GEDPLYTLI 101 (313)
T ss_dssp -------SSEEEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCT------------------TSCC-CEEC
T ss_pred -------CCEEEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEEEeeecC------------------CCCcccchh
Confidence 233445667899999999999998 799999999999999997621 235667788
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC-CCCCEEEEEECCCcEEEEE
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD 305 (358)
+|...+.+++| ++. +|++|+.||.|++||. ... ...+..|...|.+++|+| ++. +|++++.||.|++||
T Consensus 102 ~~~~~i~~~~~--~~~-~l~~~~~d~~i~~~d~---~~~---~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 102 GHQGNVCSLSF--QDG-VVISGSWDKTAKVWKE---GSL---VYNLQAHNASVWDAKVVSFSEN-KFLTASADKTIKLWQ 171 (313)
T ss_dssp CCSSCEEEEEE--ETT-EEEEEETTSEEEEEET---TEE---EEEEECCSSCEEEEEEEETTTT-EEEEEETTSCEEEEE
T ss_pred hcccCEEEEEe--cCC-EEEEEeCCCCEEEEcC---CcE---EEecccCCCceeEEEEccCCCC-EEEEEECCCCEEEEe
Confidence 99999999999 344 9999999999999992 222 256778999999999998 555 999999999999999
Q ss_pred CCCCCCeeEEEec-CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 306 TRVGKSALTSFKA-HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 306 ~r~~~~~~~~~~~-h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+ .....+.. |...|++++|+|++ . |++|+.||.|++||+++.+
T Consensus 172 ~~---~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~ 216 (313)
T 3odt_A 172 ND---KVIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGD 216 (313)
T ss_dssp TT---EEEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCC
T ss_pred cC---ceEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchh
Confidence 43 35566665 99999999999999 5 8999999999999998765
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=187.64 Aligned_cols=168 Identities=15% Similarity=0.118 Sum_probs=136.7
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCC-CcEEEcCCCCCeEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQS-PLVKFGGHKDEGYA 234 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~ 234 (358)
...+....|...|++++|+|++ .+|++++.+|.|++|++..... .. +...+.+|...|++
T Consensus 140 ~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~~------------------~~~~~~~~~~h~~~v~~ 200 (450)
T 2vdu_B 140 LKLRKRFCFSKRPNAISIAEDD-TTVIIADKFGDVYSIDINSIPE------------------EKFTQEPILGHVSMLTD 200 (450)
T ss_dssp EEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTSCCC------------------SSCCCCCSEECSSCEEE
T ss_pred eeeeecccCCCCceEEEEcCCC-CEEEEEeCCCcEEEEecCCccc------------------ccccceeeecccCceEE
Confidence 3334445788999999999999 7999999999999999976210 11 33466789999999
Q ss_pred EEeCCC---CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 235 IDWNPI---TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 235 l~~s~~---~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
++|+|+ +. +|++|+.|+.|++||++++.... ..+.+|...|.+++|+ ++. +|++|+.|+.|+|||++++ .
T Consensus 201 ~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~---~~~~~h~~~v~~~~~s-d~~-~l~s~~~d~~v~vwd~~~~-~ 273 (450)
T 2vdu_B 201 VHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFIVD---KWLFGHKHFVSSICCG-KDY-LLLSAGGDDKIFAWDWKTG-K 273 (450)
T ss_dssp EEEEECTTSCE-EEEEEETTSCEEEEEESCTTCEE---EECCCCSSCEEEEEEC-STT-EEEEEESSSEEEEEETTTC-C
T ss_pred EEEcCCCCCCc-EEEEEcCCCcEEEEECCCCceee---eeecCCCCceEEEEEC-CCC-EEEEEeCCCeEEEEECCCC-c
Confidence 999999 76 99999999999999998743211 2255899999999999 887 9999999999999999985 4
Q ss_pred eeEEEe-------------------------cCCCCeEEEEEeCCCCcEEEEEe-CCCCEEEEeC
Q 018322 312 ALTSFK-------------------------AHNADVNVISWNRLASCLLASGS-DDGTFSIHDL 350 (358)
Q Consensus 312 ~~~~~~-------------------------~h~~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDl 350 (358)
++..+. .+...|..|+|+|++ .+|++++ .++.|+||++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 274 NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL-PFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS-SEEEEEETTCSEEEEEEE
T ss_pred EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC-CEEEEEECCCCeEEEEEe
Confidence 555554 234579999999999 7888887 8999999999
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=214.46 Aligned_cols=167 Identities=21% Similarity=0.281 Sum_probs=150.2
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.+.|++++|+|++ .++|+|+.||+|+|||+.. ...+..+.+|...|.+++|+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~vw~~~~---------------------~~~~~~~~~h~~~v~~~~~s 666 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDG-QRIASCGADKTLQVFKAET---------------------GEKLLDIKAHEDEVLCCAFS 666 (1249)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEEEEEC
T ss_pred EEEecccccEEEEEECCCC-CEEEEEeCCCeEEEEECCC---------------------CCEEEEeccCCCCEEEEEEe
Confidence 5677899999999999999 7999999999999999987 57778899999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC-CCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE-PDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
|++. +|++|+.||.|++||+.++ ... ..+.+|...|.+++|+|++ ..++++|+.||.|++||++++ .++..+.
T Consensus 667 ~~~~-~l~s~~~d~~v~vwd~~~~-~~~---~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~ 740 (1249)
T 3sfz_A 667 SDDS-YIATCSADKKVKIWDSATG-KLV---HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMF 740 (1249)
T ss_dssp TTSS-EEEEEETTSEEEEEETTTC-CEE---EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEEC
T ss_pred cCCC-EEEEEeCCCeEEEEECCCC-ceE---EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheec
Confidence 9998 9999999999999999874 333 5678899999999999953 338999999999999999985 5778889
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+|...|++++|+|++ .+|++|+.||.|++||+++.+
T Consensus 741 ~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 741 GHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSAN 776 (1249)
T ss_dssp CCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTE
T ss_pred CCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCc
Confidence 999999999999999 899999999999999997653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=192.55 Aligned_cols=160 Identities=14% Similarity=0.237 Sum_probs=127.6
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeEEEEeCCC--
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPI-- 240 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~-- 240 (358)
|.+.|++++|+|++ .+|++|+.||.|+|||+.. ..++..+. .|...|.+++|+|.
T Consensus 213 h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~---------------------~~~~~~~~~~~~~~v~~~~~~~~~s 270 (437)
T 3gre_A 213 RHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRF---------------------NVLIRSWSFGDHAPITHVEVCQFYG 270 (437)
T ss_dssp GGCCEEEEEECTTS-CEEEEEETTSCEEEEETTT---------------------TEEEEEEBCTTCEEEEEEEECTTTC
T ss_pred CCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCC---------------------ccEEEEEecCCCCceEEEEeccccC
Confidence 89999999999998 7999999999999999987 45666665 77789999977754
Q ss_pred --CCCeEEEEeCCCcEEEEecCCCCCcccC--------------------CCcccc--CCCcEEEEEECCCCCCEEEEEE
Q 018322 241 --TTGRLVTGDCNSCIYLWEPASDATWNVD--------------------PNPFIG--HSASVEDLQWSPTEPDVFASCS 296 (358)
Q Consensus 241 --~~~~l~sgs~dg~I~lwd~~~~~~~~~~--------------------~~~~~~--h~~~V~~v~~sp~~~~~las~s 296 (358)
+. +|++|+.||.|++||++++...... ...+.+ |...|.+++|+ ++. +|++|+
T Consensus 271 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~ 347 (437)
T 3gre_A 271 KNSV-IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDE 347 (437)
T ss_dssp TTEE-EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEG
T ss_pred CCcc-EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecC
Confidence 54 8999999999999999864311000 001233 78889999999 555 999999
Q ss_pred CCCcEEEEECCCCCCeeEEEec-------------------------------------CCCCeEEEEEeCC-CCcEEEE
Q 018322 297 VDGHIAIWDTRVGKSALTSFKA-------------------------------------HNADVNVISWNRL-ASCLLAS 338 (358)
Q Consensus 297 ~Dg~I~iwD~r~~~~~~~~~~~-------------------------------------h~~~V~~i~~~p~-~~~~las 338 (358)
.||.|++||++++. +...+.. |...|++|+|++. ...+|+|
T Consensus 348 ~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s 426 (437)
T 3gre_A 348 ATSSIVMFSLNELS-SSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVA 426 (437)
T ss_dssp GGTEEEEEETTCGG-GCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEE
T ss_pred CCCeEEEEECCCcc-cceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEE
Confidence 99999999999853 3333332 8999999999998 2279999
Q ss_pred EeCCCCEEEEe
Q 018322 339 GSDDGTFSIHD 349 (358)
Q Consensus 339 gs~Dg~i~iwD 349 (358)
|+.||.|+||.
T Consensus 427 ~~~dG~I~iw~ 437 (437)
T 3gre_A 427 CDNSGLIGIFQ 437 (437)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCceEEEeC
Confidence 99999999995
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-21 Score=185.11 Aligned_cols=163 Identities=21% Similarity=0.367 Sum_probs=139.4
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
....+.+|.+.|+++.| ++ .+|++|+.||+|++||+.. ...+..+.+|...|.+++
T Consensus 165 ~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~---------------------~~~~~~~~~h~~~v~~l~ 220 (435)
T 1p22_A 165 CKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNT---------------------GEMLNTLIHHCEAVLHLR 220 (435)
T ss_dssp EEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSS---------------------CCEEEEECCCCSCEEEEE
T ss_pred EEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCC---------------------CcEEEEEcCCCCcEEEEE
Confidence 34566789999999999 44 6999999999999999987 567788899999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
|++ ++|++|+.||.|++||+.+.... .....+.+|...|.+++| ++. +|++|+.||.|++||++++ .++..+
T Consensus 221 ~~~---~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~i~vwd~~~~-~~~~~~ 292 (435)
T 1p22_A 221 FNN---GMMVTCSKDRSIAVWDMASPTDI-TLRRVLVGHRAAVNVVDF--DDK-YIVSASGDRTIKVWNTSTC-EFVRTL 292 (435)
T ss_dssp CCT---TEEEEEETTSCEEEEECSSSSCC-EEEEEECCCSSCEEEEEE--ETT-EEEEEETTSEEEEEETTTC-CEEEEE
T ss_pred EcC---CEEEEeeCCCcEEEEeCCCCCCc-eeeeEecCCCCcEEEEEe--CCC-EEEEEeCCCeEEEEECCcC-cEEEEE
Confidence 974 39999999999999999874332 112456789999999999 455 9999999999999999985 578888
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..|...|.+++|+ + .+|++|+.||.|++||+++++
T Consensus 293 ~~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 293 NGHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA 327 (435)
T ss_dssp ECCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCC
Confidence 9999999999995 4 789999999999999999765
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7e-23 Score=193.18 Aligned_cols=154 Identities=14% Similarity=0.142 Sum_probs=119.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC--------CCCCeEEEEeC
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP--------ITTGRLVTGDC 250 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--------~~~~~l~sgs~ 250 (358)
.++|+++.|++|+|||+...... ...++..+.+|.+.|++|+|+| ++. +||||+.
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~----------------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~ 164 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETII----------------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGD 164 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEE----------------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEET
T ss_pred CEEEEEeCCCcEEEEECCCCccc----------------eeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEEC
Confidence 68999999999999998762110 0122334679999999999998 565 9999999
Q ss_pred CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee-----------------
Q 018322 251 NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL----------------- 313 (358)
Q Consensus 251 dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~----------------- 313 (358)
|++|+|||+++.+.. ..+.+|...|.+++|+|++.++|++|+.||+|++||++++....
T Consensus 165 D~tv~~Wd~~~~~~~----~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~ 240 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPI----LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN 240 (393)
T ss_dssp TSEEEEEEEETTEEE----EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred CCeEEEEECCCCcee----eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence 999999999774332 45667889999999999987689999999999999998753211
Q ss_pred -------EEEecCCCCeEEEEEe-CCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 -------TSFKAHNADVNVISWN-RLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 -------~~~~~h~~~V~~i~~~-p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
....+|...|.++.|. +++ ..|++++.|+++++||++..+
T Consensus 241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~ 288 (393)
T 4gq1_A 241 TLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANN 288 (393)
T ss_dssp SGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC----
T ss_pred cccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCC
Confidence 1124577889999997 677 899999999999999998654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=209.81 Aligned_cols=170 Identities=19% Similarity=0.360 Sum_probs=144.0
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
....+.+|.+.|++++|+|++ .++|+++.||+|+|||+.. .+.+..+.+|...|.+++
T Consensus 649 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~---------------------~~~~~~~~~~~~~v~~~~ 706 (1249)
T 3sfz_A 649 KLLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSAT---------------------GKLVHTYDEHSEQVNCCH 706 (1249)
T ss_dssp EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCEEEEEECCSSCEEEEE
T ss_pred EEEEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCC---------------------CceEEEEcCCCCcEEEEE
Confidence 335566899999999999999 7999999999999999987 577888999999999999
Q ss_pred eCCCCCC-eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC----
Q 018322 237 WNPITTG-RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS---- 311 (358)
Q Consensus 237 ~s~~~~~-~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~---- 311 (358)
|+|.+.+ ++++|+.||.|++||+.++. .. ..+.+|...|.+++|+|++. +|++|+.||.|++||++++..
T Consensus 707 ~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~---~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~ 781 (1249)
T 3sfz_A 707 FTNKSNHLLLATGSNDFFLKLWDLNQKE-CR---NTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSI 781 (1249)
T ss_dssp ECSSSSCCEEEEEETTSCEEEEETTSSS-EE---EEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred EecCCCceEEEEEeCCCeEEEEECCCcc-hh---heecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCccccee
Confidence 9995332 88999999999999998743 22 56778999999999999998 999999999999999876321
Q ss_pred -------------------------------------------------eeEEE-ecCCCCeEEEEEeCCCCcEEEEEeC
Q 018322 312 -------------------------------------------------ALTSF-KAHNADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 312 -------------------------------------------------~~~~~-~~h~~~V~~i~~~p~~~~~lasgs~ 341 (358)
.+..+ ..|...|.+++|+|++ .++++|+.
T Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~ 860 (1249)
T 3sfz_A 782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALS 860 (1249)
T ss_dssp ECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECS
T ss_pred cccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeC
Confidence 00111 2678889999999999 89999999
Q ss_pred CCCEEEEeCCCCC
Q 018322 342 DGTFSIHDLRLLK 354 (358)
Q Consensus 342 Dg~i~iwDlr~~~ 354 (358)
||.|++||+.+..
T Consensus 861 dg~v~vwd~~~~~ 873 (1249)
T 3sfz_A 861 QYCVELWNIDSRL 873 (1249)
T ss_dssp SSCEEEEETTTTE
T ss_pred CCeEEEEEcCCCc
Confidence 9999999998653
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-21 Score=191.17 Aligned_cols=205 Identities=15% Similarity=0.179 Sum_probs=165.7
Q ss_pred ceeEEEEe--ccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 69 CLSFDIVR--DTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDD 146 (358)
Q Consensus 69 ~ls~~~~~--d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (358)
..++.|.| ++ .+|++|+ .++.|.||++.+-....
T Consensus 67 v~~~~~sp~~~~-----------~~l~s~~-----~dg~v~vw~~~~~~~~~---------------------------- 102 (615)
T 1pgu_A 67 VTTVKFSPIKGS-----------QYLCSGD-----ESGKVIVWGWTFDKESN---------------------------- 102 (615)
T ss_dssp EEEEEECSSTTC-----------CEEEEEE-----TTSEEEEEEEEEEGGGT----------------------------
T ss_pred EEEEEECcCCCC-----------CEEEEec-----CCCEEEEEeCCCCcccc----------------------------
Confidence 66778877 64 4788887 35689999984210000
Q ss_pred ccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCC----CcEEEEeCCCCccccccccccccCCCCCCCCCCCc
Q 018322 147 DEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADT----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222 (358)
Q Consensus 147 ~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (358)
. ....+...+..|.+.|+++.|+|++ .+|++++.+ +.|++||. ..++
T Consensus 103 -~----~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~~~~v~~~d~-----------------------~~~~ 153 (615)
T 1pgu_A 103 -S----VEVNVKSEFQVLAGPISDISWDFEG-RRLCVVGEGRDNFGVFISWDS-----------------------GNSL 153 (615)
T ss_dssp -E----EEEEEEEEEECCSSCEEEEEECTTS-SEEEEEECCSSCSEEEEETTT-----------------------CCEE
T ss_pred -c----ccccccchhhcccccEEEEEEeCCC-CEEEEeccCCCCccEEEEEEC-----------------------CCcc
Confidence 0 0223445667899999999999999 688888887 78999983 2456
Q ss_pred EEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCC---cEEEEEECCC-CCCEEEEEECC
Q 018322 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA---SVEDLQWSPT-EPDVFASCSVD 298 (358)
Q Consensus 223 ~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~---~V~~v~~sp~-~~~~las~s~D 298 (358)
..+.+|...|++++|+|++..+|++|+.|+.|++||+.+. .. ...+.+|.. .|.+++|+|+ +. +|++++.|
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~~---~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~d 228 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KF---SASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSD 228 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EE---EEEECSSSCTTCCEEEEEECSTTCC-EEEEEETT
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-ce---eeeecccCCCCceEEEEEECCCCCC-EEEEEeCC
Confidence 7788999999999999998768999999999999998763 22 245677888 9999999999 77 99999999
Q ss_pred CcEEEEECCCCCCeeEEE-e---cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 299 GHIAIWDTRVGKSALTSF-K---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 299 g~I~iwD~r~~~~~~~~~-~---~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|.|++||++++ ..+..+ . .|...|++++|+ ++ .+|++++.||.|++||+++.+
T Consensus 229 g~i~vwd~~~~-~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 229 RKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTTSK 285 (615)
T ss_dssp CCEEEEETTTC-CEEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTTTE
T ss_pred CeEEEEECCCC-CEeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCCCc
Confidence 99999999985 466677 5 899999999999 77 899999999999999998764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-21 Score=182.13 Aligned_cols=231 Identities=11% Similarity=0.032 Sum_probs=144.5
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..+++|.|....... ....+|+.|. .++.|.||++.
T Consensus 136 ~~~v~~v~~~p~~~~~~~---~d~~~las~s-----~D~tv~~Wd~~--------------------------------- 174 (393)
T 4gq1_A 136 HNFVNDIDIADVYSADNR---LAEQVIASVG-----DDCTLIIWRLT--------------------------------- 174 (393)
T ss_dssp SSCEEEEEEEEEECTTCS---EEEEEEEEEE-----TTSEEEEEEEE---------------------------------
T ss_pred CCceEEEEEccccccccC---CCCCEEEEEE-----CCCeEEEEECC---------------------------------
Confidence 345678888874211100 1135777776 56799999984
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCC----CCCCCCC
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAP----QVSNQSP 221 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 221 (358)
..........|...|.+++|+|.++.+|++++.||+|+|||+................... .......
T Consensus 175 --------~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 175 --------DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp --------TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred --------CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 2223356678999999999999987799999999999999998743221111100000000 0000112
Q ss_pred cEEEcCCCCCeEEEEeC-CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEE------------------E
Q 018322 222 LVKFGGHKDEGYAIDWN-PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED------------------L 282 (358)
Q Consensus 222 ~~~~~~h~~~v~~l~~s-~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~------------------v 282 (358)
.....+|...+.++.|+ +++. +|++++.|++|++||+..... . ..+..|...+.. .
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~-~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANND-Y---NEISDSTMKLGPKNLLPNVQGISLFPSLLGA 321 (393)
T ss_dssp -----CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-----------------------CCSCSEEEECSSCCSSCC
T ss_pred eeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCC-C---ceEeeecCccccEEEccccccccccCcceeE
Confidence 22346788899999987 6777 999999999999999976322 1 222333333222 2
Q ss_pred EECC-CCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 283 QWSP-TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 283 ~~sp-~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.|+| .+..++++|+.||.|+|||+.++ .+......|...|++++|+|+| ++||+++.+| +.+|.+..+
T Consensus 322 ~~~~~~~~~~~~sgs~Dg~V~lwd~~~~-~~~~~~~~~~~~V~svafspdG-~~LA~as~~G-v~lvrL~gf 390 (393)
T 4gq1_A 322 CPHPRYMDYFATAHSQHGLIQLINTYEK-DSNSIPIQLGMPIVDFCWHQDG-SHLAIATEGS-VLLTRLMGF 390 (393)
T ss_dssp EECSSCTTEEEEEETTTTEEEEEETTCT-TCCEEEEECSSCEEEEEECTTS-SEEEEEESSE-EEEEEEGGG
T ss_pred EEccCCCCEEEEEECCCCEEEEEECCCC-cEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCC-eEEEEEeCc
Confidence 3333 33436677888999999999985 4666677888999999999999 9999998766 666665433
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-21 Score=182.21 Aligned_cols=163 Identities=21% Similarity=0.359 Sum_probs=136.7
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
....+.+|.+.|.++.|++ .++++|+.||.|++||+.... .......+.+|...|.+++
T Consensus 205 ~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~------------------~~~~~~~~~~~~~~v~~~~ 263 (435)
T 1p22_A 205 MLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPT------------------DITLRRVLVGHRAAVNVVD 263 (435)
T ss_dssp EEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSS------------------CCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCC------------------CceeeeEecCCCCcEEEEE
Confidence 3456678999999999974 589999999999999998621 0122256789999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
| ++. +|++|+.||.|++||+++.. .. ..+.+|...|.+++|+ +. ++++|+.||.|++||++++ .++..+
T Consensus 264 ~--~~~-~l~s~~~dg~i~vwd~~~~~-~~---~~~~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~~-~~~~~~ 332 (435)
T 1p22_A 264 F--DDK-YIVSASGDRTIKVWNTSTCE-FV---RTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECG-ACLRVL 332 (435)
T ss_dssp E--ETT-EEEEEETTSEEEEEETTTCC-EE---EEEECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTC-CEEEEE
T ss_pred e--CCC-EEEEEeCCCeEEEEECCcCc-EE---EEEcCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCCC-CEEEEE
Confidence 9 455 99999999999999998743 22 5677899999999995 44 9999999999999999985 578888
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+|...|++++| ++ .+|++|+.||.|++||+++.+
T Consensus 333 ~~h~~~v~~~~~--~~-~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 333 EGHEELVRCIRF--DN-KRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp CCCSSCEEEEEC--CS-SEEEEEETTSCEEEEEHHHHT
T ss_pred eCCcCcEEEEEe--cC-CEEEEEeCCCcEEEEECCCCC
Confidence 999999999999 45 799999999999999987554
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-21 Score=172.09 Aligned_cols=167 Identities=19% Similarity=0.145 Sum_probs=142.1
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
...+...+.+|.+.|+++.| |++ .+|++++.||.|++||+.. ......+..|...+.
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~---------------------~~~~~~~~~~~~~v~ 63 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDD---------------------QWLGTVVYTGQGFLN 63 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EET-TEEEEEETTSEEEEEEESS---------------------SEEEEEEEECSSCEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCC---------------------CEEEEEeecCCccEE
Confidence 44566788899999999999 777 6899999999999999966 455667788999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
+++|+|++. +|++|+.||.|++|++..... ......+.+|...|.+++| ++. +|++++.||.|++|| . ...+
T Consensus 64 ~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~--~~~-~l~~~~~d~~i~~~d--~-~~~~ 135 (313)
T 3odt_A 64 SVCYDSEKE-LLLFGGKDTMINGVPLFATSG-EDPLYTLIGHQGNVCSLSF--QDG-VVISGSWDKTAKVWK--E-GSLV 135 (313)
T ss_dssp EEEEETTTT-EEEEEETTSCEEEEETTCCTT-SCC-CEECCCSSCEEEEEE--ETT-EEEEEETTSEEEEEE--T-TEEE
T ss_pred EEEECCCCC-EEEEecCCCeEEEEEeeecCC-CCcccchhhcccCEEEEEe--cCC-EEEEEeCCCCEEEEc--C-CcEE
Confidence 999999998 999999999999999976432 1223567789999999999 344 899999999999999 2 3577
Q ss_pred EEEecCCCCeEEEEEeC-CCCcEEEEEeCCCCEEEEeCCC
Q 018322 314 TSFKAHNADVNVISWNR-LASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p-~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
..+..|...|.+++|.| ++ .+|++++.||.|++||.+.
T Consensus 136 ~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~ 174 (313)
T 3odt_A 136 YNLQAHNASVWDAKVVSFSE-NKFLTASADKTIKLWQNDK 174 (313)
T ss_dssp EEEECCSSCEEEEEEEETTT-TEEEEEETTSCEEEEETTE
T ss_pred EecccCCCceeEEEEccCCC-CEEEEEECCCCEEEEecCc
Confidence 78889999999999998 55 8999999999999999553
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=180.22 Aligned_cols=160 Identities=19% Similarity=0.322 Sum_probs=136.7
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
....+.+|.+.|+++.|++ .++++|+.||+|++||+.. ...+..+.+|...|.+++
T Consensus 151 ~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~---------------------~~~~~~~~~h~~~v~~~~ 206 (445)
T 2ovr_B 151 CLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAET---------------------GECIHTLYGHTSTVRCMH 206 (445)
T ss_dssp EEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEE
T ss_pred EEEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCc---------------------CcEEEEECCCCCcEEEEE
Confidence 3456678999999999983 5899999999999999987 466778889999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
|++ . +|++|+.||.|++||+.++. .. ..+.+|...|.+++| ++. .+++|+.||.|++||++++ .++..+
T Consensus 207 ~~~--~-~l~s~s~dg~i~~wd~~~~~-~~---~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~-~~~~~~ 275 (445)
T 2ovr_B 207 LHE--K-RVVSGSRDATLRVWDIETGQ-CL---HVLMGHVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETE-TCLHTL 275 (445)
T ss_dssp EET--T-EEEEEETTSEEEEEESSSCC-EE---EEEECCSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGT-EEEEEE
T ss_pred ecC--C-EEEEEeCCCEEEEEECCCCc-EE---EEEcCCcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCC-cEeEEe
Confidence 963 3 89999999999999998743 22 467789999999999 455 8999999999999999984 577788
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..|...|.+++| ++ .+|++|+.||.|++||+++++
T Consensus 276 ~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 276 QGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGN 310 (445)
T ss_dssp CCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCC
Confidence 899999999999 55 789999999999999998765
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-21 Score=198.40 Aligned_cols=164 Identities=10% Similarity=0.035 Sum_probs=136.2
Q ss_pred EEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 158 ~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
.....+|.+.|++++|+|++ .+||+|+.||+|+||+... ..... ...|...|++|+|
T Consensus 10 ~~~~~gh~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~---------------------~~~~~-~~~~~~~V~~l~f 66 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQ---------------------VEVVI-KLEDRSAIKEMRF 66 (902)
T ss_dssp EEEEEECSSCEEEEEEETTT-TEEEEEETTSEEEEECSTT---------------------CEEEE-ECSSCCCEEEEEE
T ss_pred cccccCCCCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCC---------------------cEEEE-EcCCCCCEEEEEE
Confidence 35667999999999999999 7999999999999999765 22222 2357789999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee----
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL---- 313 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~---- 313 (358)
+| +. +|++++.|++|++||+.++ ... ..+. |...|++++|+|++. +|++|+.||.|++||++.+. +.
T Consensus 67 sp-g~-~L~S~s~D~~v~lWd~~~~-~~~---~~~~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~-~~~~~i 137 (902)
T 2oaj_A 67 VK-GI-YLVVINAKDTVYVLSLYSQ-KVL---TTVF-VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQ-LSSFKL 137 (902)
T ss_dssp ET-TT-EEEEEETTCEEEEEETTTC-SEE---EEEE-CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTE-EEEEEE
T ss_pred cC-CC-EEEEEECcCeEEEEECCCC-cEE---EEEc-CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCc-ccccee
Confidence 99 76 8999999999999999874 322 2333 678999999999998 99999999999999998743 21
Q ss_pred -------EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 -------TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 -------~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+.+|...|++|+|+|++..+|++|+.||.| |||+++.+
T Consensus 138 ~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~ 184 (902)
T 2oaj_A 138 DNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE 184 (902)
T ss_dssp CCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE
T ss_pred ccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc
Confidence 12356889999999999754789999999999 99998754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-19 Score=173.19 Aligned_cols=161 Identities=22% Similarity=0.374 Sum_probs=138.5
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.....+.+|.+.|.++.+++ ..+++|+.||+|++||+.. .+++..+.+|...+.++
T Consensus 190 ~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~---------------------~~~~~~~~~~~~~v~~~ 245 (445)
T 2ovr_B 190 ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIET---------------------GQCLHVLMGHVAAVRCV 245 (445)
T ss_dssp EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSS---------------------CCEEEEEECCSSCEEEE
T ss_pred cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCC---------------------CcEEEEEcCCcccEEEE
Confidence 34456678999999999964 5799999999999999987 56778889999999999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
+| ++. +|++|+.||.|++||+++. .. ...+.+|...|.+++| ++. .+++|+.||.|++||++++ .++..
T Consensus 246 ~~--~~~-~l~~~~~dg~i~iwd~~~~-~~---~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~-~~~~~ 314 (445)
T 2ovr_B 246 QY--DGR-RVVSGAYDFMVKVWDPETE-TC---LHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETG-NCIHT 314 (445)
T ss_dssp EE--CSS-CEEEEETTSCEEEEEGGGT-EE---EEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTC-CEEEE
T ss_pred EE--CCC-EEEEEcCCCEEEEEECCCC-cE---eEEecCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCC-CEEEE
Confidence 99 455 8999999999999999773 22 2567789999999999 555 8999999999999999985 57788
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+..|...+.++.++ + .+|++|+.||.|++||+++++
T Consensus 315 ~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~ 350 (445)
T 2ovr_B 315 LTGHQSLTSGMELK--D-NILVSGNADSTVKIWDIKTGQ 350 (445)
T ss_dssp ECCCCSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC
T ss_pred EcCCcccEEEEEEe--C-CEEEEEeCCCeEEEEECCCCc
Confidence 89999999998886 3 689999999999999998765
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=177.52 Aligned_cols=163 Identities=13% Similarity=0.120 Sum_probs=134.9
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
.+|.+.|++++|+|++ .+|++++.||.|+||++..... ..+...+.+|...|++++|+|++
T Consensus 8 ~~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~ 68 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAK------------------NVDLLQSLRYKHPLLCCNFIDNT 68 (342)
T ss_dssp SCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTT------------------EEEEEEEEECSSCEEEEEEEESS
T ss_pred cCCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCc------------------cccceeeeecCCceEEEEECCCC
Confidence 3799999999999988 7899999999999999976210 11244566899999999999986
Q ss_pred CCeEEEEeCCCcEEEEec-CCCCCcccCCCcccc--CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC---------C
Q 018322 242 TGRLVTGDCNSCIYLWEP-ASDATWNVDPNPFIG--HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV---------G 309 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~-~~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~---------~ 309 (358)
..+|++|+.||.|++||+ ... .. ..+.+ |...|.+++|+| +. +|++++.|+.|++||++. .
T Consensus 69 ~~~l~~~~~dg~i~~wd~~~~~-~~----~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 141 (342)
T 1yfq_A 69 DLQIYVGTVQGEILKVDLIGSP-SF----QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp SEEEEEEETTSCEEEECSSSSS-SE----EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred CcEEEEEcCCCeEEEEEeccCC-ce----EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccccccC
Confidence 327999999999999999 663 22 45667 999999999999 66 999999999999999986 3
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC-CCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL-LKV 355 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~-~~~ 355 (358)
.++..+. |...|.+++|+|++ |++|+.||.|++||+++ ...
T Consensus 142 -~~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 142 -LNSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp -SCSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC
T ss_pred -CeeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc
Confidence 2444444 88999999999866 89999999999999998 543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=181.89 Aligned_cols=159 Identities=11% Similarity=0.069 Sum_probs=124.3
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE----cCCCCCeEEEEeCCCCC
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF----GGHKDEGYAIDWNPITT 242 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~s~~~~ 242 (358)
.|.+++|+|++ .+||+|+.||+|+|||+......- . ....+.++ .+|...|++++|+|++
T Consensus 131 sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~--~------------~~i~l~ti~~~~~gh~~~V~sVawSPdg- 194 (588)
T 2j04_A 131 TYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENT--P------------EFYFESSIRLSDAGSKDWVTHIVWYEDV- 194 (588)
T ss_dssp CEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTC--C------------CCEEEEEEECSCTTCCCCEEEEEEETTE-
T ss_pred cEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCcccc--c------------cceeeeeeecccccccccEEEEEEcCCc-
Confidence 59999999999 899999999999999998721000 0 00124555 6788899999999986
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCcc-ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
|++++.|++|++|++..... ......+ .+|...|.+++|+ +. .+|+++ +++|++||+..+ .......+|.+
T Consensus 195 --Laass~D~tVrlWd~~~~~~-~~~~~tL~~~h~~~V~svaFs--g~-~LASa~-~~tIkLWd~~~~-~~~~~~~gh~~ 266 (588)
T 2j04_A 195 --LVAALSNNSVFSMTVSASSH-QPVSRMIQNASRRKITDLKIV--DY-KVVLTC-PGYVHKIDLKNY-SISSLKTGSLE 266 (588)
T ss_dssp --EEEEETTCCEEEECCCSSSS-CCCEEEEECCCSSCCCCEEEE--TT-EEEEEC-SSEEEEEETTTT-EEEEEECSCCS
T ss_pred --EEEEeCCCeEEEEECCCCcc-ccceeeecccccCcEEEEEEE--CC-EEEEEe-CCeEEEEECCCC-eEEEEEcCCCc
Confidence 88888899999999976431 1001234 3788999999999 45 888887 699999999874 23222337999
Q ss_pred CeEEEEE--eCCCCcEEEEEeCCCCEEEEeCC
Q 018322 322 DVNVISW--NRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 322 ~V~~i~~--~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.|+.++| +|++ ..|++++.||+ ++|.+.
T Consensus 267 ~V~~va~~~s~d~-~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 267 NFHIIPLNHEKES-TILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCCEEEETTCSSC-EEEEECSSCEE-EEEESS
T ss_pred eEEEEEeeeCCCC-CEEEEEcCCCC-EEEeec
Confidence 9999999 9999 89999999999 999875
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-20 Score=172.17 Aligned_cols=125 Identities=14% Similarity=0.178 Sum_probs=102.3
Q ss_pred cEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCc-EEEEecCCCCCcccCCCccc-c-CCCcEEEEEECCCCCCEEEEEECC
Q 018322 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSC-IYLWEPASDATWNVDPNPFI-G-HSASVEDLQWSPTEPDVFASCSVD 298 (358)
Q Consensus 222 ~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~-I~lwd~~~~~~~~~~~~~~~-~-h~~~V~~v~~sp~~~~~las~s~D 298 (358)
+..+.+|...|++++|+|++. +|++|+.||+ |++||++++.. . ..+. + |...|.+++|+|++. +|++|+.|
T Consensus 188 ~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~~~-~---~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d 261 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDGVL-V---REFRRGLDRADVVDMKWSTDGS-KLAVVSDK 261 (355)
T ss_dssp CEEECCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEETTTCCE-E---EEEECTTCCSCEEEEEECTTSC-EEEEEETT
T ss_pred cEEEEccCCceEEEEECCCCC-EEEEEeCCCCEEEEEECCCCcE-E---EEEEcCCCCCcEEEEEECCCCC-EEEEEECC
Confidence 778999999999999999998 9999999998 99999987433 2 4565 5 999999999999998 99999999
Q ss_pred CcEEEEECCCCCC-eeEE------------------E---ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 299 GHIAIWDTRVGKS-ALTS------------------F---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 299 g~I~iwD~r~~~~-~~~~------------------~---~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
++|+|||++.+.. .... + ..+......++|++++ .+|++++.||.+++|+++..
T Consensus 262 ~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~-~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 262 WTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISES-SLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSS-EEEEEETTTTEEEEEEEEEE
T ss_pred CEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCC-CEEEEEeCCCeEEEEEEEcC
Confidence 9999999986421 1111 1 1112234779999999 89999999999999998654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=182.72 Aligned_cols=159 Identities=12% Similarity=0.170 Sum_probs=127.8
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC-----CeEEEEe
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-----EGYAIDW 237 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~ 237 (358)
+|...|.+++|+|+| .+||+++.||.|+|||... .+..+. |.. .+.+++|
T Consensus 83 ~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~-----------------------~l~~l~-~~~~~~~~sv~svaf 137 (588)
T 2j04_A 83 QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK-----------------------MLTNLD-SKGNLSSRTYHCFEW 137 (588)
T ss_dssp SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE-----------------------EEEECC-CSSCSTTTCEEEEEE
T ss_pred CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc-----------------------eeeecc-CCCccccccEEEEEE
Confidence 568899999999999 7999999999999999533 233444 544 5999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcc---cCCCcc----ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWN---VDPNPF----IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~---~~~~~~----~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
||++. +||+|+.||+|+|||+..+.... .....+ .+|...|.+++|+|++ +++++.|++|++||+....
T Consensus 138 SPDG~-~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 138 NPIES-SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp CSSSS-CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSS
T ss_pred cCCCC-EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCc
Confidence 99998 99999999999999997742100 001233 6788999999999988 8889999999999998744
Q ss_pred C--eeEEE-ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 311 S--ALTSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 311 ~--~~~~~-~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
. ...++ .+|...|.+++|+ + ..||+++ +++|++||+.+.+
T Consensus 214 ~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~ 256 (588)
T 2j04_A 214 HQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYS 256 (588)
T ss_dssp SCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTE
T ss_pred cccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCe
Confidence 2 23455 4788899999999 5 7889887 6999999998654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-20 Score=166.65 Aligned_cols=155 Identities=22% Similarity=0.318 Sum_probs=132.7
Q ss_pred eeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE--cCCCCCeEEEEeCCCCCCeE
Q 018322 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~s~~~~~~l 245 (358)
+++|.|++++ +||+|. |++|+|||+.+ .+.+..+ .+|...|++++|+|++. +|
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~t---------------------g~~~~~~~~~~~~~~V~~v~~~~~~~-~l 82 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASS---------------------GDILQLLQMEQPGEYISSVAWIKEGN-YL 82 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTT---------------------CCEEEEEECCSTTCCEEEEEECTTSS-EE
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCC---------------------CCEEEEEEecCCCCeEEEEEECCCCC-EE
Confidence 5889999876 788865 89999999987 4444444 56778999999999998 99
Q ss_pred EEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEE
Q 018322 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV 325 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~ 325 (358)
++|+.||+|++|++.++ ... ..+.+|...+.++.+. +. ++++++.++.+++|+.......+..+.+|...+..
T Consensus 83 ~sgs~Dg~v~iw~~~~~-~~~---~~~~~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQ-KRL---RNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 155 (318)
T ss_dssp EEEETTSEEEEEETTTT-EEE---EEEECCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred EEEECCCcEEEeecCCc-eeE---EEecCccceEEEeecC--CC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEE
Confidence 99999999999999874 322 5678899988877665 44 89999999999999999876777888999999999
Q ss_pred EEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 326 ISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 326 i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+.|++.+ .+|++++.||.|+|||+++.+.
T Consensus 156 ~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~ 184 (318)
T 4ggc_A 156 LRWAPDG-RHLASGGNDNLVNVWPSAPGEG 184 (318)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEESSCBTT
T ss_pred EEEcCCC-CEEEEEecCcceeEEECCCCcc
Confidence 9999999 8999999999999999987653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-20 Score=175.86 Aligned_cols=172 Identities=13% Similarity=0.157 Sum_probs=129.3
Q ss_pred EecCCCceeEEEEcCCCCcEEE----EEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCC---cEEEcCCCCCeE
Q 018322 161 KVAHQGCVNRIRAMTQNPHICA----SWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP---LVKFGGHKDEGY 233 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~la----t~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~ 233 (358)
.+.|.+.|++++|+|++ .+|| +|+.|++|+|||+........ ...++ ...+.+|...|.
T Consensus 88 ~~~~~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~-------------~~~~~~~~~~~~~~h~~~V~ 153 (434)
T 2oit_A 88 LVPMKFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAK-------------QQKRPFAYHKLLKDAGGMVI 153 (434)
T ss_dssp EECCSSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTC-------------SSCCCSEEEECCCSGGGSEE
T ss_pred cccCCCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCc-------------CCcceeeeeeccCCCCCceE
Confidence 45688999999999999 5666 888999999999865210000 00122 344567999999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
+|+|+|....+|++|+.||+|++||+++. ... ....+|...|.+++|+|++. +|++|+.||.|++||++. ...
T Consensus 154 ~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~---~~~~~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~~--~~~ 226 (434)
T 2oit_A 154 DMKWNPTVPSMVAVCLADGSIAVLQVTET-VKV---CATLPSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPTL--QEK 226 (434)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEEESSS-EEE---EEEECGGGCEEEEEECTTSS-CEEEEETTSCEEEECTTC--CEE
T ss_pred EEEECCCCCCEEEEEECCCeEEEEEcCCC-cce---eeccCCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccCC--ccc
Confidence 99999984449999999999999999874 211 33456889999999999988 999999999999999983 334
Q ss_pred EEEecC-------CCCeEEEEEeCCCCcEEE-EEeCCCC------EEEEeCCCCC
Q 018322 314 TSFKAH-------NADVNVISWNRLASCLLA-SGSDDGT------FSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~h-------~~~V~~i~~~p~~~~~la-sgs~Dg~------i~iwDlr~~~ 354 (358)
..+..| ...|.+++|++++ .+++ .++.+|. +++|++++.+
T Consensus 227 ~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 227 KVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EEECCCTTCCTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred ccccCCcccCCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCC
Confidence 444333 2379999999988 5553 3445543 8999999764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-20 Score=176.48 Aligned_cols=176 Identities=15% Similarity=0.167 Sum_probs=130.0
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
...++.+++++.+ .++++++.+| |+||+............. ........+... ..|...|++++|+|++. +
T Consensus 36 ~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~v~~l~~spdg~-~ 106 (434)
T 2oit_A 36 KERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDD-----PNKIVDKVQGLL-VPMKFPIHHLALSCDNL-T 106 (434)
T ss_dssp CSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCC-----TTCEEECCCCEE-ECCSSCEEEEEECTTSC-E
T ss_pred CCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccC-----cccccccCcccc-ccCCCcccEEEEcCCCC-E
Confidence 3468999999988 6888888888 999886432110000000 000000122222 24567899999999998 8
Q ss_pred EE----EEeCCCcEEEEecCCC-----C--CcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 245 LV----TGDCNSCIYLWEPASD-----A--TWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 245 l~----sgs~dg~I~lwd~~~~-----~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
|+ +|+.|+.|+|||+.+. . ........+.+|...|.+++|+|+...+|++|+.||+|++||++++ ..+
T Consensus 107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~~~ 185 (434)
T 2oit_A 107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-VKV 185 (434)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-EEE
T ss_pred EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-cce
Confidence 88 7889999999998653 0 1111124466799999999999985559999999999999999985 455
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.....|...|++++|+|++ .+|++|+.||+|++||++
T Consensus 186 ~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT
T ss_pred eeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC
Confidence 5566788999999999999 999999999999999998
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-18 Score=161.75 Aligned_cols=161 Identities=11% Similarity=0.102 Sum_probs=126.2
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
+...+.+++|+|++..++++++.+++|++||+.. .+.+..+..+. .+.+++|+|++.
T Consensus 30 ~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~---------------------~~~~~~~~~~~-~v~~~~~spdg~- 86 (391)
T 1l0q_A 30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---------------------NNVIATVPAGS-SPQGVAVSPDGK- 86 (391)
T ss_dssp CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---------------------TEEEEEEECSS-SEEEEEECTTSS-
T ss_pred cCCCcceEEECCCCCEEEEECCCCCeEEEEECCC---------------------CeEEEEEECCC-CccceEECCCCC-
Confidence 4456899999999966678888999999999976 35555565554 899999999998
Q ss_pred eE-EEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 244 RL-VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 244 ~l-~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
+| ++++.++.|++||+.++.. . ..+. +...+.+++|+|++..++++++.++.|++||++++ ..+..+..| ..
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~~-~---~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~-~~ 159 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNTV-A---GTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTVSVG-RS 159 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEE-E---EEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECC-SS
T ss_pred EEEEEECCCCEEEEEECCCCeE-E---EEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEecC-CC
Confidence 66 5566779999999977422 2 2233 44578999999999855588899999999999984 455555544 45
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+.+++|+|++..++++++.++.|++||+++.+
T Consensus 160 ~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 79999999994455788899999999998764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-18 Score=158.45 Aligned_cols=161 Identities=14% Similarity=0.084 Sum_probs=125.2
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.+...|++++|+|++..++++++.++.|++||+.. .+.+..+..| ..+.+++|+|++.
T Consensus 71 ~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~---------------------~~~~~~~~~~-~~~~~~~~s~dg~ 128 (391)
T 1l0q_A 71 PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS---------------------NTVAGTVKTG-KSPLGLALSPDGK 128 (391)
T ss_dssp ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---------------------TEEEEEEECS-SSEEEEEECTTSS
T ss_pred ECCCCccceEECCCCCEEEEEECCCCEEEEEECCC---------------------CeEEEEEeCC-CCcceEEECCCCC
Confidence 34459999999999966667777889999999987 3444555544 4789999999998
Q ss_pred CeE-EEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 243 GRL-VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 243 ~~l-~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
+| ++++.++.|++||+.++ ... ..+..| ..+.+++|+|++..++++++.++.|++||++++ ..+..+ .+..
T Consensus 129 -~l~~~~~~~~~v~~~d~~~~-~~~---~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~-~~~~ 200 (391)
T 1l0q_A 129 -KLYVTNNGDKTVSVINTVTK-AVI---NTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTV-KVEA 200 (391)
T ss_dssp -EEEEEETTTTEEEEEETTTT-EEE---EEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE-ECSS
T ss_pred -EEEEEeCCCCEEEEEECCCC-cEE---EEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEE-ecCC
Confidence 55 78888999999999763 222 233333 567999999999856688889999999999984 344444 4566
Q ss_pred CeEEEEEeCCCCcEEEEEe---CCCCEEEEeCCCCC
Q 018322 322 DVNVISWNRLASCLLASGS---DDGTFSIHDLRLLK 354 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs---~Dg~i~iwDlr~~~ 354 (358)
.+.+++|+|++ .+|++++ .++.|++||+++.+
T Consensus 201 ~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 201 APSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp EEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTE
T ss_pred CccceEECCCC-CEEEEEecCcCCCcEEEEECCCCe
Confidence 79999999999 6666666 68999999998764
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=163.46 Aligned_cols=162 Identities=13% Similarity=0.063 Sum_probs=131.3
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
.+|.+.|+++.|+|++ .++++++.++.|++||+.. ...+..+..|...+.+++|+|++
T Consensus 166 ~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~ 223 (433)
T 3bws_A 166 KKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKT---------------------LAYKATVDLTGKWSKILLYDPIR 223 (433)
T ss_dssp HTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTT---------------------CCEEEEEECSSSSEEEEEEETTT
T ss_pred cccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCC---------------------ceEEEEEcCCCCCeeEEEEcCCC
Confidence 4789999999999988 7999999999999999976 46667778888999999999999
Q ss_pred CCeE-EEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE--------CCCcEEEEECCCCCCe
Q 018322 242 TGRL-VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS--------VDGHIAIWDTRVGKSA 312 (358)
Q Consensus 242 ~~~l-~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s--------~Dg~I~iwD~r~~~~~ 312 (358)
. ++ ++++.++.|++||++++ ... ..+.. ...+.+++|+|++. .+++++ .||.|++||++++ ..
T Consensus 224 ~-~l~~~~~~~~~i~~~d~~~~-~~~---~~~~~-~~~~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~ 295 (433)
T 3bws_A 224 D-LVYCSNWISEDISVIDRKTK-LEI---RKTDK-IGLPRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKE-KL 295 (433)
T ss_dssp T-EEEEEETTTTEEEEEETTTT-EEE---EECCC-CSEEEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTT-EE
T ss_pred C-EEEEEecCCCcEEEEECCCC-cEE---EEecC-CCCceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCC-cE
Confidence 8 66 56668999999999763 322 22332 35699999999998 777776 5889999999974 33
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+. ...|...+.+++|+|++..++++++.++.|++||+++.+
T Consensus 296 ~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 296 ID-TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EE-EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred Ee-eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 33 335566899999999996677888999999999998654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=157.91 Aligned_cols=165 Identities=11% Similarity=0.004 Sum_probs=129.8
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+..|...++++.|+|++..++++++.++.|++||+.. ...+..+..+ ..+.+++|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~---------------------~~~~~~~~~~-~~~~~~~~~ 262 (433)
T 3bws_A 205 ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT---------------------KLEIRKTDKI-GLPRGLLLS 262 (433)
T ss_dssp EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT---------------------TEEEEECCCC-SEEEEEEEC
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC---------------------CcEEEEecCC-CCceEEEEc
Confidence 444578999999999999966667777899999999976 3444444443 468999999
Q ss_pred CCCCCeEEEEe--------CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 239 PITTGRLVTGD--------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 239 ~~~~~~l~sgs--------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
|++. +|++++ .||.|++||+.++ ... ....|...+.+++|+|++..++++++.++.|++||++++
T Consensus 263 ~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~-~~~----~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~- 335 (433)
T 3bws_A 263 KDGK-ELYIAQFSASNQESGGGRLGIYSMDKE-KLI----DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK- 335 (433)
T ss_dssp TTSS-EEEEEEEESCTTCSCCEEEEEEETTTT-EEE----EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT-
T ss_pred CCCC-EEEEEECCCCccccCCCeEEEEECCCC-cEE----eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC-
Confidence 9998 888887 5889999999763 221 223456688999999999867888899999999999974
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeC---------------CCCEEEEeCCCCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSD---------------DGTFSIHDLRLLK 354 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~---------------Dg~i~iwDlr~~~ 354 (358)
..+..+ .+...+.+++|+|++ .+|++++. ||.|++||+.+++
T Consensus 336 ~~~~~~-~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 336 KVQKSI-PVFDKPNTIALSPDG-KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEEEE-ECSSSEEEEEECTTS-SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred cEEEEe-cCCCCCCeEEEcCCC-CEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 344444 477789999999999 77776665 5799999998754
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=157.57 Aligned_cols=160 Identities=12% Similarity=0.060 Sum_probs=112.6
Q ss_pred CCCceeEEEEcCC----CCcEEEEEeC--------------------CCcEEEEeCCCCccccccccccccCCCCCCCCC
Q 018322 164 HQGCVNRIRAMTQ----NPHICASWAD--------------------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ 219 (358)
Q Consensus 164 H~~~V~~i~~~p~----~~~~lat~s~--------------------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (358)
|.+.|+.+.++|+ + .++++++. |+.|++|++.. .+
T Consensus 110 ~~~~v~sla~spd~~~~~-~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~--------------------dG 168 (356)
T 2w18_A 110 EIREIRALFCSSDDESEK-QVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAE--------------------DG 168 (356)
T ss_dssp SEEEEEEECC------CC-EEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECT--------------------TS
T ss_pred cccceEEEEECCCccccc-cEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECC--------------------CC
Confidence 4467888888888 5 55665553 55566666543 24
Q ss_pred CCcEEEcCCCCCeEEEEeCC---CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccC---CCcEEEEEECCCCCCEE-
Q 018322 220 SPLVKFGGHKDEGYAIDWNP---ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH---SASVEDLQWSPTEPDVF- 292 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~---~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h---~~~V~~v~~sp~~~~~l- 292 (358)
+.+..+.+|...++.++|++ ++. +|++|+.|++|+|||+.++ +.. +.+.+| ...+.+++|+|++. ++
T Consensus 169 ~~~~s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TG-k~l---~tL~g~~~~v~~v~~vafSpdG~-~lv 242 (356)
T 2w18_A 169 GGKENQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTG-QLL---KKMHIDDSYQASVCHKAYSEMGL-LFI 242 (356)
T ss_dssp CEEEEEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTC-CEE---EEEECCC---CCCEEEEEEETTE-EEE
T ss_pred ceeeeeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCC-cEE---EEEcCCCcceeeeEEEEECCCCC-EEE
Confidence 55667778999999999999 556 9999999999999999884 333 445544 34678889999987 44
Q ss_pred -----------EEEECCCcEEEEECCCCCCeeEEE-----ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 293 -----------ASCSVDGHIAIWDTRVGKSALTSF-----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 293 -----------as~s~Dg~I~iwD~r~~~~~~~~~-----~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
++|+.|++|++||..++ ..+..+ .+|...+.+..++ + .++|+|+.||+|+|||+++++
T Consensus 243 s~s~~~~~w~laSGs~D~tIklWd~~tg-k~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk 316 (356)
T 2w18_A 243 VLSHPCAKESESLRSPVFQLIVINPKTT-LSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQ 316 (356)
T ss_dssp EEC------------CCEEEEEEETTTT-EEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCS
T ss_pred EeccCCCcceeeccCCCcEEEEEECCCC-EEEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCc
Confidence 67889999999999885 344333 3565555555554 5 799999999999999999875
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-16 Score=150.07 Aligned_cols=161 Identities=14% Similarity=0.111 Sum_probs=122.8
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCc--EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
.+..|.+.+.+++|+|++..++++++.++. |++||+.. .. ...+..|...+.+++|
T Consensus 217 ~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~---------------------~~-~~~l~~~~~~~~~~~~ 274 (415)
T 2hqs_A 217 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---------------------GQ-IRQVTDGRSNNTEPTW 274 (415)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---------------------CC-EEECCCCSSCEEEEEE
T ss_pred EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC---------------------CC-EEeCcCCCCcccceEE
Confidence 456788999999999999545557777665 89999876 22 3567778889999999
Q ss_pred CCCCCCeEEEEeC-CC--cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC---CcEEEEECCCCCC
Q 018322 238 NPITTGRLVTGDC-NS--CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD---GHIAIWDTRVGKS 311 (358)
Q Consensus 238 s~~~~~~l~sgs~-dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D---g~I~iwD~r~~~~ 311 (358)
+|++. +|++++. ++ .|++||+.++.. ..+..|...+.+++|+|++. .|++++.+ +.|++||+.++.
T Consensus 275 spdg~-~l~~~s~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdG~-~l~~~~~~~g~~~i~~~d~~~~~- 346 (415)
T 2hqs_A 275 FPDSQ-NLAFTSDQAGRPQVYKVNINGGAP-----QRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGG- 346 (415)
T ss_dssp CTTSS-EEEEEECTTSSCEEEEEETTSSCC-----EECCCSSSEEEEEEECTTSS-EEEEEEECSSCEEEEEEETTTCC-
T ss_pred CCCCC-EEEEEECCCCCcEEEEEECCCCCE-----EEEecCCCcccCeEECCCCC-EEEEEECcCCceEEEEEECCCCC-
Confidence 99998 8887775 45 677778866321 23445677899999999999 67666653 589999998753
Q ss_pred eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCC---CEEEEeCCCC
Q 018322 312 ALTSFKAHNADVNVISWNRLASCLLASGSDDG---TFSIHDLRLL 353 (358)
Q Consensus 312 ~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg---~i~iwDlr~~ 353 (358)
...+..|. .+.+++|+|++ .+|++++.++ .|++||+...
T Consensus 347 -~~~l~~~~-~~~~~~~spdg-~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 347 -VQVLSSTF-LDETPSLAPNG-TMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp -EEECCCSS-SCEEEEECTTS-SEEEEEEEETTEEEEEEEETTSC
T ss_pred -EEEecCCC-CcCCeEEcCCC-CEEEEEEcCCCccEEEEEECCCC
Confidence 34555554 79999999999 7777777766 7999998754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-16 Score=149.00 Aligned_cols=162 Identities=10% Similarity=0.027 Sum_probs=126.6
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCC---cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTG---HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg---~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
.+..|.+.|.+++|+|++ ..||+++.++ .|++||+.. .+. ..+..|...+.+++
T Consensus 173 ~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~t---------------------g~~-~~l~~~~~~~~~~~ 229 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLAN---------------------GAV-RQVASFPRHNGAPA 229 (415)
T ss_dssp EEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTT---------------------CCE-EEEECCSSCEEEEE
T ss_pred EEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCC---------------------CcE-EEeecCCCcccCEE
Confidence 445689999999999999 6888888775 999999986 233 35667888999999
Q ss_pred eCCCCCCeEE-EEeCCCc--EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-CC--cEEEEECCCCC
Q 018322 237 WNPITTGRLV-TGDCNSC--IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DG--HIAIWDTRVGK 310 (358)
Q Consensus 237 ~s~~~~~~l~-sgs~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg--~I~iwD~r~~~ 310 (358)
|+|++. +|+ +++.++. |++||+.++.. ..+..|...+.+++|+|++. .|++++. ++ .|.+||+..+.
T Consensus 230 ~spdg~-~la~~~~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 230 FSPDGS-KLAFALSKTGSLNLYVMDLASGQI-----RQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp ECTTSS-EEEEEECTTSSCEEEEEETTTCCE-----EECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSC
T ss_pred EcCCCC-EEEEEEecCCCceEEEEECCCCCE-----EeCcCCCCcccceEECCCCC-EEEEEECCCCCcEEEEEECCCCC
Confidence 999998 676 7766655 99999976322 34567888999999999998 6776665 55 67777888743
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCC---CCEEEEeCCCCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLK 354 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~D---g~i~iwDlr~~~ 354 (358)
...+..|...+.+++|+|++ .+|++++.+ +.|++||+.+.+
T Consensus 303 --~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 303 --PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp --CEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCC
T ss_pred --EEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCC
Confidence 44556677789999999999 777776653 589999998765
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.1e-16 Score=137.15 Aligned_cols=163 Identities=15% Similarity=0.118 Sum_probs=119.3
Q ss_pred CCceeEEEEcCCCCcEEEEEe--CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
...|.+++|+|++ .+|++++ .++.++||.+... ......+..+. .+.+++|+|++.
T Consensus 84 ~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~~~-~~~~~~~spdg~ 141 (297)
T 2ojh_A 84 TICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPST--------------------GGTPRLMTKNL-PSYWHGWSPDGK 141 (297)
T ss_dssp CCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETT--------------------CCCCEECCSSS-SEEEEEECTTSS
T ss_pred cccccceEECCCC-CEEEEEEeCCCCcceEEEEECC--------------------CCceEEeecCC-CccceEECCCCC
Confidence 4789999999999 6777777 4456666665431 12233343333 488999999998
Q ss_pred CeEE-EEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEE-ECCCcEEEEECCCCCCeeEEEecCC
Q 018322 243 GRLV-TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC-SVDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 243 ~~l~-sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~-s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
+|+ +++.++.+.||++...+... ..+..|...+.+++|+|++. .|+.+ ..++.++||++......+..+..|.
T Consensus 142 -~l~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 216 (297)
T 2ojh_A 142 -SFTYCGIRDQVFDIYSMDIDSGVE---TRLTHGEGRNDGPDYSPDGR-WIYFNSSRTGQMQIWRVRVDGSSVERITDSA 216 (297)
T ss_dssp -EEEEEEEETTEEEEEEEETTTCCE---EECCCSSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred -EEEEEECCCCceEEEEEECCCCcc---eEcccCCCccccceECCCCC-EEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence 665 78889999999975432222 34556778899999999998 55554 4699999999874344666777788
Q ss_pred CCeEEEEEeCCCCcEEEEEeCC-----------CCEEEEeCCCCCC
Q 018322 321 ADVNVISWNRLASCLLASGSDD-----------GTFSIHDLRLLKV 355 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~D-----------g~i~iwDlr~~~~ 355 (358)
..+..++|+|++ .+|++++.+ +.|.+||+.+.+.
T Consensus 217 ~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 217 YGDWFPHPSPSG-DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp EEEEEEEECTTS-SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred cccCCeEECCCC-CEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 889999999999 777777655 5699999987653
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-15 Score=134.37 Aligned_cols=164 Identities=11% Similarity=-0.009 Sum_probs=118.8
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC-CCCeEEEEeC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-KDEGYAIDWN 238 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s 238 (358)
.+..|.+.|.+++|+|++ .+|++++ ++.|++||+... ..+...+.+| ...+.+++|+
T Consensus 36 ~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~--------------------~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGD--------------------PSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp EEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSC--------------------CSCEECCCTTCCCBCSCCEEC
T ss_pred eeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCC--------------------CCceEeccccccccccceEEC
Confidence 455689999999999999 6777766 789999998751 2233333444 3578899999
Q ss_pred CCCCCeEEEEe--CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 239 PITTGRLVTGD--CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 239 ~~~~~~l~sgs--~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
|++. +|++++ .++.+.||.+...+... ..+..+ ..+..++|+|++..++++++.++.++||+++........+
T Consensus 94 pdg~-~l~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 168 (297)
T 2ojh_A 94 PDGA-LYAISDKVEFGKSAIYLLPSTGGTP---RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRL 168 (297)
T ss_dssp TTSS-EEEEEECTTTSSCEEEEEETTCCCC---EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred CCCC-EEEEEEeCCCCcceEEEEECCCCce---EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEc
Confidence 9998 888888 33556666554322211 223333 3488999999999555588899999999975433445666
Q ss_pred ecCCCCeEEEEEeCCCCcEEEE-EeCCCCEEEEeCC
Q 018322 317 KAHNADVNVISWNRLASCLLAS-GSDDGTFSIHDLR 351 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~las-gs~Dg~i~iwDlr 351 (358)
..|...+.+++|+|++ .+|+. +..++.++||+++
T Consensus 169 ~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 169 THGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp CCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEE
T ss_pred ccCCCccccceECCCC-CEEEEEecCCCCccEEEEC
Confidence 7788899999999999 65554 4468999999886
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-14 Score=128.58 Aligned_cols=171 Identities=6% Similarity=-0.038 Sum_probs=116.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCC-CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADT-GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~d-g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
.....|.+.+.+++|+|++ .+|++++.+ +.|++|++..... ....+..+..+. .+.+++|
T Consensus 31 ~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~~~~ 91 (343)
T 1ri6_A 31 TQVVDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDG-----------------ALTFAAESALPG-SLTHIST 91 (343)
T ss_dssp EEEEECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTC-----------------CEEEEEEEECSS-CCSEEEE
T ss_pred eeeEecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCC-----------------ceeeccccccCC-CCcEEEE
Confidence 4456788999999999999 555555554 9999999973100 012233444444 7789999
Q ss_pred CCCCCCeEEEEe-CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE-CCCcEEEEECCCCCCeeE-
Q 018322 238 NPITTGRLVTGD-CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRVGKSALT- 314 (358)
Q Consensus 238 s~~~~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~~~~~~~- 314 (358)
+|++. +|++++ .++.|.+||+.. +........+. ....+.+++|+|++. .+++++ .++.|++||+........
T Consensus 92 s~dg~-~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 92 DHQGQ-FVFVGSYNAGNVSVTRLED-GLPVGVVDVVE-GLDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp CTTSS-EEEEEETTTTEEEEEEEET-TEEEEEEEEEC-CCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred cCCCC-EEEEEecCCCeEEEEECCC-Ccccccccccc-CCCCceEEEECCCCC-EEEEecCCCCEEEEEEecCCCceeee
Confidence 99998 676655 488999999952 21111112222 234588999999998 455555 899999999987222211
Q ss_pred ---EEec-CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 315 ---SFKA-HNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 315 ---~~~~-h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+.. ....+..++|+|++..+++++..++.|.+||+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 168 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred cccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 2222 3457889999999944556666889999999964
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-14 Score=139.12 Aligned_cols=159 Identities=8% Similarity=0.111 Sum_probs=121.7
Q ss_pred eeEEEEcCCCCcEEEEEeCCCcEEEEeC--CCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC----CC
Q 018322 168 VNRIRAMTQNPHICASWADTGHVQVWDL--RSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP----IT 241 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~----~~ 241 (358)
+..++|+|++ ++|++++.+++|++||+ .+ .+.+..+. +......++|+| ++
T Consensus 181 ~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t---------------------~~~~~~i~-~g~~p~~va~sp~~~~dg 237 (543)
T 1nir_A 181 VHISRMSASG-RYLLVIGRDARIDMIDLWAKE---------------------PTKVAEIK-IGIEARSVESSKFKGYED 237 (543)
T ss_dssp EEEEEECTTS-CEEEEEETTSEEEEEETTSSS---------------------CEEEEEEE-CCSEEEEEEECCSTTCTT
T ss_pred cceEEECCCC-CEEEEECCCCeEEEEECcCCC---------------------CcEEEEEe-cCCCcceEEeCCCcCCCC
Confidence 8999999999 78888899999999999 43 34455565 345679999999 99
Q ss_pred CCeEEEEe-CCCcEEEEecCCCCCcccCCCcccc----------CC-CcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 242 TGRLVTGD-CNSCIYLWEPASDATWNVDPNPFIG----------HS-ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 242 ~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~----------h~-~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
. +|++++ .+++|.+||..+... . ..+.. |. ..+..+.++|++..+++++..++.|.+||+...
T Consensus 238 ~-~l~v~~~~~~~v~v~D~~t~~~-~---~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~ 312 (543)
T 1nir_A 238 R-YTIAGAYWPPQFAIMDGETLEP-K---QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI 312 (543)
T ss_dssp T-EEEEEEEESSEEEEEETTTCCE-E---EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTS
T ss_pred C-EEEEEEccCCeEEEEecccccc-c---eeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCC
Confidence 8 888887 489999999876332 2 11211 33 378999999998878888999999999999875
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.........+...+..+.|+|++..+++++..+++|.+||+.+++
T Consensus 313 ~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~ 357 (543)
T 1nir_A 313 DNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR 357 (543)
T ss_dssp SSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe
Confidence 433222234667788999999994455566678999999998764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-14 Score=129.73 Aligned_cols=168 Identities=13% Similarity=0.174 Sum_probs=114.2
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
...+.+..++|+|++..+++++..++.|++||+... . .......+..+ ..+.+++|+|++.
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-~-----------------~~~~~~~~~~~-~~~~~~~~s~dg~ 141 (343)
T 1ri6_A 81 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG-L-----------------PVGVVDVVEGL-DGCHSANISPDNR 141 (343)
T ss_dssp ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT-E-----------------EEEEEEEECCC-TTBCCCEECTTSS
T ss_pred ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCC-c-----------------cccccccccCC-CCceEEEECCCCC
Confidence 334589999999999555566666899999998420 0 02233344433 3588999999998
Q ss_pred CeEEEEe-CCCcEEEEecCCCCCcccCCC--cccc-CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe---eEE
Q 018322 243 GRLVTGD-CNSCIYLWEPASDATWNVDPN--PFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTS 315 (358)
Q Consensus 243 ~~l~sgs-~dg~I~lwd~~~~~~~~~~~~--~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~---~~~ 315 (358)
+|++++ .++.|++||+...+.... .. .+.. ....+.+++|+|++..+++++..++.|++||+...... ...
T Consensus 142 -~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~ 219 (343)
T 1ri6_A 142 -TLWVPALKQDRICLFTVSDDGHLVA-QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQT 219 (343)
T ss_dssp -EEEEEEGGGTEEEEEEECTTSCEEE-EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred -EEEEecCCCCEEEEEEecCCCceee-ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEee
Confidence 777776 899999999976333211 01 1222 33578899999999855566668999999999642111 222
Q ss_pred Ee----cC--CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 316 FK----AH--NADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 316 ~~----~h--~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+. .+ ...+..++|+|++..+++++..++.|.+||+.
T Consensus 220 ~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 220 LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 22 11 23567899999994455567689999999998
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-14 Score=128.94 Aligned_cols=162 Identities=14% Similarity=0.096 Sum_probs=118.5
Q ss_pred eeEEEEcCCCCcEEEEE-eCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE
Q 018322 168 VNRIRAMTQNPHICASW-ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 246 (358)
+..+.|+|++..++++. +.++.|.+||+.. .+.+..+..+...+.+++|+|++. +|+
T Consensus 143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~s~dg~-~l~ 200 (353)
T 3vgz_A 143 PRELVADDATNTVYISGIGKESVIWVVDGGN---------------------IKLKTAIQNTGKMSTGLALDSEGK-RLY 200 (353)
T ss_dssp EEEEEEETTTTEEEEEEESSSCEEEEEETTT---------------------TEEEEEECCCCTTCCCCEEETTTT-EEE
T ss_pred CceEEECCCCCEEEEEecCCCceEEEEcCCC---------------------CceEEEecCCCCccceEEECCCCC-EEE
Confidence 68899999995555554 3578999999976 344555554555688999999998 899
Q ss_pred EEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEE
Q 018322 247 TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326 (358)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i 326 (358)
+++.++.|.+||+.+............++...+.+++|+|++..+++++..++.|.+||+.++ ..+..+.... ...+
T Consensus 201 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~--~~~~ 277 (353)
T 3vgz_A 201 TTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG-NILAKVAAPE--SLAV 277 (353)
T ss_dssp EECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC-CEEEEEECSS--CCCE
T ss_pred EEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcCC--CceE
Confidence 999999999999977432111001112355678899999999856666666799999999885 4555554433 2568
Q ss_pred EEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 327 SWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 327 ~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+|+|++..++++...++.|.+||+.+++
T Consensus 278 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 278 LFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 9999994466666679999999998764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-13 Score=125.15 Aligned_cols=165 Identities=7% Similarity=0.007 Sum_probs=120.4
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCC-cEEEcCCCCCeEEEEeCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP-LVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~s~~~ 241 (358)
.+...+ .+.|+|++..+++++..++.|++||+.. ... ...+..+..+..+++|+|++
T Consensus 38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~s~dg 95 (331)
T 3u4y_A 38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL---------------------EPPKVVAIQEGQSSMADVDITPDD 95 (331)
T ss_dssp CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS---------------------SSCEEEEEEECSSCCCCEEECTTS
T ss_pred ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC---------------------CceeEEecccCCCCccceEECCCC
Confidence 445666 9999999965666766689999999976 233 55566666666669999999
Q ss_pred CCeEEEEeCCC---cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCc-EEEEECCCCCCee---E
Q 018322 242 TGRLVTGDCNS---CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH-IAIWDTRVGKSAL---T 314 (358)
Q Consensus 242 ~~~l~sgs~dg---~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~-I~iwD~r~~~~~~---~ 314 (358)
. +|+++..++ .|.+||+.+... . ..+. +.....+++|+|+++.+++++..++. |.+|++....... .
T Consensus 96 ~-~l~~~~~~~~~~~i~v~d~~~~~~-~---~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~ 169 (331)
T 3u4y_A 96 Q-FAVTVTGLNHPFNMQSYSFLKNKF-I---STIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQ 169 (331)
T ss_dssp S-EEEECCCSSSSCEEEEEETTTTEE-E---EEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred C-EEEEecCCCCcccEEEEECCCCCe-E---EEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCC
Confidence 8 888655553 899999976322 2 2222 34457899999999877778788788 9999998643221 1
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
........+..++|+|++..+++++..++.|.+||+++++.
T Consensus 170 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 170 EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 22244556899999999944666776789999999987653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=126.04 Aligned_cols=172 Identities=10% Similarity=0.098 Sum_probs=118.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCC---cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTG---HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg---~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.....+..++.++.|+|++ .+++++..++ .|++||+.. ...+..+..+ ....++
T Consensus 77 ~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~---------------------~~~~~~~~~~-~~~~~~ 133 (331)
T 3u4y_A 77 VAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLK---------------------NKFISTIPIP-YDAVGI 133 (331)
T ss_dssp EEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTT---------------------TEEEEEEECC-TTEEEE
T ss_pred EecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCC---------------------CCeEEEEECC-CCccce
Confidence 3444566666669999999 5555555543 899999976 3344444433 456899
Q ss_pred EeCCCCCCeEEEEeCCCc-EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe--
Q 018322 236 DWNPITTGRLVTGDCNSC-IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA-- 312 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~-I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~-- 312 (358)
+|+|++..+++++..++. |.+|++...+...............+..++|+|+++.+++++..++.|++||+.++. .
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~-~~~ 212 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE-NIT 212 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT-SCE
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc-ccc
Confidence 999999734455566688 999999764432111011123345689999999998566777789999999998753 4
Q ss_pred -eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 313 -LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 313 -~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+..+. ....+..++|+|++..++++...++.|.+||+.+++.
T Consensus 213 ~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 213 LLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred eeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 44454 3456789999999933455555678999999987643
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-14 Score=141.78 Aligned_cols=159 Identities=9% Similarity=0.088 Sum_probs=113.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
..|..+.|+|++ ..|++++. +.|++||+.... ......+..|...+.+++|+|++. +|
T Consensus 109 ~~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~~~-------------------~~~~~~l~~~~~~~~~~~~SPDG~-~l 166 (741)
T 2ecf_A 109 TGIVDYQWSPDA-QRLLFPLG-GELYLYDLKQEG-------------------KAAVRQLTHGEGFATDAKLSPKGG-FV 166 (741)
T ss_dssp EESCCCEECTTS-SEEEEEET-TEEEEEESSSCS-------------------TTSCCBCCCSSSCEEEEEECTTSS-EE
T ss_pred cCcceeEECCCC-CEEEEEeC-CcEEEEECCCCC-------------------cceEEEcccCCcccccccCCCCCC-EE
Confidence 458899999999 67777776 999999997610 002334566777899999999998 89
Q ss_pred EEEeCCCcEEEEecCCCCCcccCCCccccCCC----------------cEEEEEECCCCCCEEEEEECCC----------
Q 018322 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSA----------------SVEDLQWSPTEPDVFASCSVDG---------- 299 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~----------------~V~~v~~sp~~~~~las~s~Dg---------- 299 (358)
+.++ ++.|++||+.++ ... .....+.. .+.+++|||++. .|++++.|+
T Consensus 167 a~~~-~~~i~~~d~~~g-~~~---~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~~~ 240 (741)
T 2ecf_A 167 SFIR-GRNLWVIDLASG-RQM---QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKRYE 240 (741)
T ss_dssp EEEE-TTEEEEEETTTT-EEE---ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEEEE
T ss_pred EEEe-CCcEEEEecCCC-CEE---EeccCCccceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEecCC
Confidence 8887 569999999763 221 11111222 247899999999 677776655
Q ss_pred -----------------------cEEEEECCC-CCCeeEEEe-cCCCCeEEEEEeCCCCcEEEEEeC-----CCCEEEEe
Q 018322 300 -----------------------HIAIWDTRV-GKSALTSFK-AHNADVNVISWNRLASCLLASGSD-----DGTFSIHD 349 (358)
Q Consensus 300 -----------------------~I~iwD~r~-~~~~~~~~~-~h~~~V~~i~~~p~~~~~lasgs~-----Dg~i~iwD 349 (358)
.|++||+.+ +........ .|...+..++| |++ ..|++++. +..|++||
T Consensus 241 ~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d 318 (741)
T 2ecf_A 241 VYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVT 318 (741)
T ss_dssp ECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEE
T ss_pred CCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEE
Confidence 789999987 542211111 47778999999 999 66665543 56899999
Q ss_pred CCCCC
Q 018322 350 LRLLK 354 (358)
Q Consensus 350 lr~~~ 354 (358)
+.+++
T Consensus 319 ~~~g~ 323 (741)
T 2ecf_A 319 LASNQ 323 (741)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 98765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-13 Score=124.97 Aligned_cols=201 Identities=6% Similarity=0.053 Sum_probs=138.0
Q ss_pred eEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeE-EEEEecCCCc
Q 018322 89 TAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPIL-QLRKVAHQGC 167 (358)
Q Consensus 89 ~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~H~~~ 167 (358)
.+++.+|+.+.. ....|.|+.+.. ....+ ......+...
T Consensus 2 ~~~~~vg~y~~~-~~~~i~v~~~d~---------------------------------------~tg~~~~~~~~~~~~~ 41 (347)
T 3hfq_A 2 QERILFGTYTKK-TSQGIYQGTLDT---------------------------------------TAKTLTNDGLLAATQN 41 (347)
T ss_dssp EEEEEEEECCSS-SCCEEEEEEEET---------------------------------------TTTEEEEEEEEEECSC
T ss_pred CcEEEEEeccCC-CCCCEEEEEEcC---------------------------------------CCCeEEEeeeeeccCC
Confidence 367888988765 456799998831 02222 2355667788
Q ss_pred eeEEEEcCCCCcEEEEEeC--CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 168 VNRIRAMTQNPHICASWAD--TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
+..++|+|++ .++++... ++.|++|++.... ...+..+..+...+..++|+|++. +|
T Consensus 42 p~~~a~spdg-~l~~~~~~~~~~~v~~~~~~~g~-------------------~~~~~~~~~~~~~p~~~a~spdg~-~l 100 (347)
T 3hfq_A 42 PTYLALSAKD-CLYSVDKEDDEGGIAAWQIDGQT-------------------AHKLNTVVAPGTPPAYVAVDEARQ-LV 100 (347)
T ss_dssp CCCEEECTTC-EEEEEEEETTEEEEEEEEEETTE-------------------EEEEEEEEEESCCCSEEEEETTTT-EE
T ss_pred cceEEEccCC-eEEEEEecCCCceEEEEEecCCc-------------------EEEeeeeecCCCCCEEEEECCCCC-EE
Confidence 8999999999 46655543 6899999995411 123334445667788999999998 78
Q ss_pred EEEe-CCCcEEEEecCCCCCcccCCCccc---------cCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee--
Q 018322 246 VTGD-CNSCIYLWEPASDATWNVDPNPFI---------GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL-- 313 (358)
Q Consensus 246 ~sgs-~dg~I~lwd~~~~~~~~~~~~~~~---------~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~-- 313 (358)
++++ .++.|.+|++...+.... ...+. .+...+.+++|+|++. +++++..++.|++|++.......
T Consensus 101 ~~~~~~~~~v~v~~~~~~g~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 101 YSANYHKGTAEVMKIAADGALTL-TDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEE-EEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEE
T ss_pred EEEeCCCCEEEEEEeCCCCCeee-cceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEe
Confidence 8777 689999999964333211 11111 1223588999999999 88888889999999998422221
Q ss_pred EEEec-CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 314 TSFKA-HNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 314 ~~~~~-h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
..+.. ....++.++|+|++..+++++..++.|.+|++..
T Consensus 179 ~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 179 SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred eeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 12222 2346888999999943566667789999999874
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-13 Score=121.99 Aligned_cols=163 Identities=10% Similarity=0.005 Sum_probs=120.7
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC---------CeEE
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD---------EGYA 234 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~~ 234 (358)
+...+..+.|+|++..++++...++.|.+||... .+.+..+..+.. .+.+
T Consensus 87 ~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (353)
T 3vgz_A 87 NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT---------------------GEVKGRLVLDDRKRTEEVRPLQPRE 145 (353)
T ss_dssp ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT---------------------CCEEEEEESCCCCCCSSCCCCEEEE
T ss_pred cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC---------------------CeeEEEEecCCCccccccCCCCCce
Confidence 3456889999999966777878889999999976 344444444322 2688
Q ss_pred EEeCCCCCCeEEEEe--CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe
Q 018322 235 IDWNPITTGRLVTGD--CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (358)
Q Consensus 235 l~~s~~~~~~l~sgs--~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (358)
++|+|++. ++++++ .++.|.+||+.+... . ..+..+...+.+++|+|++. .+++++.++.|.+||+.++ ..
T Consensus 146 ~~~s~dg~-~l~~~~~~~~~~i~~~d~~~~~~-~---~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~-~~ 218 (353)
T 3vgz_A 146 LVADDATN-TVYISGIGKESVIWVVDGGNIKL-K---TAIQNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADN-KI 218 (353)
T ss_dssp EEEETTTT-EEEEEEESSSCEEEEEETTTTEE-E---EEECCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTT-EE
T ss_pred EEECCCCC-EEEEEecCCCceEEEEcCCCCce-E---EEecCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCC-eE
Confidence 99999997 666665 478999999976322 2 23333455688899999998 7888888999999999985 34
Q ss_pred eEEEec----CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 313 LTSFKA----HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 313 ~~~~~~----h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+..+.. +...+..++|+|++..++++...++.|.+||+.+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 219 LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 444433 455688999999994455555566999999998765
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.8e-14 Score=141.30 Aligned_cols=159 Identities=9% Similarity=0.031 Sum_probs=112.9
Q ss_pred ceeEEEEcCCCCcEEEEEeCC---------CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 167 CVNRIRAMTQNPHICASWADT---------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~d---------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
.|..+.|+|++ ..||+++.+ +.|++||+.... ...+....+|...+.+++|
T Consensus 62 ~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~-------------------~~~l~~~~~~~~~~~~~~~ 121 (723)
T 1xfd_A 62 RAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPHGD-------------------PQSLDPPEVSNAKLQYAGW 121 (723)
T ss_dssp TCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSSCC-------------------CEECCCTTCCSCCCSBCCB
T ss_pred ccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCCCc-------------------eEeccCCccccccccccEE
Confidence 49999999999 677777764 788899997621 1111112345556889999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCC------------------cEEEEEECCCCCCEEEEEECCC
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA------------------SVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~------------------~V~~v~~sp~~~~~las~s~Dg 299 (358)
||++. +||.++. +.|++|++.++.... ....+.. .+.+++|||+++ .|++++.++
T Consensus 122 SPdG~-~la~~~~-~~i~~~~~~~g~~~~----~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~ 194 (723)
T 1xfd_A 122 GPKGQ-QLIFIFE-NNIYYCAHVGKQAIR----VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAIND 194 (723)
T ss_dssp CSSTT-CEEEEET-TEEEEESSSSSCCEE----EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEEC
T ss_pred CCCCC-EEEEEEC-CeEEEEECCCCceEE----EecCCCCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECC
Confidence 99998 8998885 799999997643211 1112222 237899999999 787777543
Q ss_pred ----------------------------------cEEEEECCCCCCeeEEEecC------CCCeEEEEEeCCCCcEEEEE
Q 018322 300 ----------------------------------HIAIWDTRVGKSALTSFKAH------NADVNVISWNRLASCLLASG 339 (358)
Q Consensus 300 ----------------------------------~I~iwD~r~~~~~~~~~~~h------~~~V~~i~~~p~~~~~lasg 339 (358)
.|++||+.++. ....+..+ ...+..++|+|++ .+|++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~ 272 (723)
T 1xfd_A 195 SRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-HDLEMMPPDDPRMREYYITMVKWATST-KVAVTW 272 (723)
T ss_dssp TTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-CCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEE
T ss_pred CccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-eeEEeeCCccCCCccceeEEEEEeCCC-eEEEEE
Confidence 79999998753 33445443 5678999999999 777666
Q ss_pred eC----CCCEEEEeCCCCC
Q 018322 340 SD----DGTFSIHDLRLLK 354 (358)
Q Consensus 340 s~----Dg~i~iwDlr~~~ 354 (358)
+. +..|++||+.+++
T Consensus 273 ~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 273 LNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp EETTSCEEEEEEEETTTCC
T ss_pred EcCCCCeEEEEEEeCCCCc
Confidence 43 3579999998765
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9e-13 Score=129.23 Aligned_cols=164 Identities=11% Similarity=0.049 Sum_probs=119.1
Q ss_pred ecCCCceeEEEEcC----CCCcEEEEEe-CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC---------
Q 018322 162 VAHQGCVNRIRAMT----QNPHICASWA-DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG--------- 227 (358)
Q Consensus 162 ~~H~~~V~~i~~~p----~~~~~lat~s-~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 227 (358)
+.+...+..+.|+| ++ .++++++ .+++|.|||... .+++..+..
T Consensus 218 i~~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t---------------------~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 218 IKIGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGET---------------------LEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EECCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTT---------------------CCEEEEEECCEECSSSCC
T ss_pred EecCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccc---------------------cccceeecccCcccCccc
Confidence 34566789999999 88 5666665 589999999876 344444443
Q ss_pred -CC-CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 228 -HK-DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 228 -h~-~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
|. ..+.++.++|++..++++...++.|.+||+.+..... .....+...+.++.|+|+++.+++++..+++|.+||
T Consensus 276 ~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~---~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 276 YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT---VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE---EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce---eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 22 3788999999887577888889999999997643211 112235667889999999995566666799999999
Q ss_pred CCCCCCeeEEEec----CCCCeEEEEEeCCCCcEEEEEe-CCCCEEEEeCCC
Q 018322 306 TRVGKSALTSFKA----HNADVNVISWNRLASCLLASGS-DDGTFSIHDLRL 352 (358)
Q Consensus 306 ~r~~~~~~~~~~~----h~~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDlr~ 352 (358)
+.++ +++..+.. |......+ ++|++..+++|++ .|++|.+||+.+
T Consensus 353 ~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 353 SKDR-RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp TTTT-EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCC-eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 9985 45555543 65433333 5777437888886 689999999987
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=139.85 Aligned_cols=147 Identities=11% Similarity=0.119 Sum_probs=107.7
Q ss_pred CCceeEEEEcCCCCcEEEEEeC-CC-----cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC---------
Q 018322 165 QGCVNRIRAMTQNPHICASWAD-TG-----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK--------- 229 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~-dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--------- 229 (358)
...|+.++|+|+| ..||+++. ++ .|++||+... .....+..+.
T Consensus 36 ~~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g---------------------~~~~~~~~~~~~~~~~~~~ 93 (741)
T 2ecf_A 36 GPTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSG---------------------QTRLLVDSKVVLPGTETLS 93 (741)
T ss_dssp CCCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTC---------------------CEEEEECGGGTC-------
T ss_pred CCCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCC---------------------ceeEccchhhccccccccc
Confidence 4578999999999 68888887 88 8999999763 2222221111
Q ss_pred ---------------CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCC--CcccCCCccccCCCcEEEEEECCCCCCEE
Q 018322 230 ---------------DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA--TWNVDPNPFIGHSASVEDLQWSPTEPDVF 292 (358)
Q Consensus 230 ---------------~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~l 292 (358)
..+.+++|+|++. +|++++. +.|++||+.++. . ...+..|...+.+++|||+++ .|
T Consensus 94 ~~~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~~~----~~~l~~~~~~~~~~~~SPDG~-~l 166 (741)
T 2ecf_A 94 DEEKARRERQRIAAMTGIVDYQWSPDAQ-RLLFPLG-GELYLYDLKQEGKAA----VRQLTHGEGFATDAKLSPKGG-FV 166 (741)
T ss_dssp -------------CCEESCCCEECTTSS-EEEEEET-TEEEEEESSSCSTTS----CCBCCCSSSCEEEEEECTTSS-EE
T ss_pred chhhhhhhhhhhccccCcceeEECCCCC-EEEEEeC-CcEEEEECCCCCcce----EEEcccCCcccccccCCCCCC-EE
Confidence 2378999999998 8888885 999999997641 2 245667788899999999999 88
Q ss_pred EEEECCCcEEEEECCCCCCeeEEEecCCCC----------------eEEEEEeCCCCcEEEEEeCCC
Q 018322 293 ASCSVDGHIAIWDTRVGKSALTSFKAHNAD----------------VNVISWNRLASCLLASGSDDG 343 (358)
Q Consensus 293 as~s~Dg~I~iwD~r~~~~~~~~~~~h~~~----------------V~~i~~~p~~~~~lasgs~Dg 343 (358)
++++ ++.|++||+.++. .......+... +..++|+|+| ..|++++.|+
T Consensus 167 a~~~-~~~i~~~d~~~g~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~ 230 (741)
T 2ecf_A 167 SFIR-GRNLWVIDLASGR-QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDE 230 (741)
T ss_dssp EEEE-TTEEEEEETTTTE-EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEEC
T ss_pred EEEe-CCcEEEEecCCCC-EEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcC
Confidence 8877 4699999998742 22222222222 4779999999 7777776655
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-12 Score=117.83 Aligned_cols=156 Identities=9% Similarity=0.051 Sum_probs=110.5
Q ss_pred ceeEEEEcCCCCcEEEEEe------------CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 167 CVNRIRAMTQNPHICASWA------------DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s------------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
.+..+.|+|++ ..+++++ .++.|.+||+.. .+.+..+.. ...+.+
T Consensus 83 ~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~---------------------~~~~~~~~~-~~~~~~ 139 (337)
T 1pby_B 83 SLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAET---------------------LSRRKAFEA-PRQITM 139 (337)
T ss_dssp CTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTT---------------------TEEEEEEEC-CSSCCC
T ss_pred cccceEECCCC-CEEEEEecccccccccccccCceEEEEECCC---------------------CcEEEEEeC-CCCcce
Confidence 67889999999 5566654 579999999976 233334433 345778
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCccc-C--C--Cc--------------------------------------
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNV-D--P--NP-------------------------------------- 271 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~-~--~--~~-------------------------------------- 271 (358)
++|+|++. +|+++ ++.|.+||+.++..... . . ..
T Consensus 140 ~~~s~dg~-~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (337)
T 1pby_B 140 LAWARDGS-KLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA 216 (337)
T ss_dssp EEECTTSS-CEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred eEECCCCC-EEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccc
Confidence 99999997 77777 68899999876321100 0 0 00
Q ss_pred -------------------cccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCC
Q 018322 272 -------------------FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLA 332 (358)
Q Consensus 272 -------------------~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~ 332 (358)
+..+...+.+++|+|++. .++++ ++.|++||+.++ ..+..+.. ...+.+++|+|++
T Consensus 217 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~--~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg 291 (337)
T 1pby_B 217 YRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLESFDLEKN-ASIKRVPL-PHSYYSVNVSTDG 291 (337)
T ss_dssp EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEEEETTTT-EEEEEEEC-SSCCCEEEECTTS
T ss_pred cccceEEEeCCCCCceEeecCCCCCceeeEEECCCCC-EEEEe--CCeEEEEECCCC-cCcceecC-CCceeeEEECCCC
Confidence 011223456799999998 66666 799999999874 34444443 3467899999999
Q ss_pred CcEEEEEeCCCCEEEEeCCCCC
Q 018322 333 SCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 333 ~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+|++++.++.|.+||+.+++
T Consensus 292 -~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 292 -STVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp -CEEEEESBSSEEEEEETTTCC
T ss_pred -CEEEEEcCCCcEEEEECcCCc
Confidence 777778889999999998765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-12 Score=118.71 Aligned_cols=163 Identities=7% Similarity=0.018 Sum_probs=112.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC-CCCeEEEEeCCCCCCe
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-KDEGYAIDWNPITTGR 244 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~~ 244 (358)
..+.++.|+|++. ++++...++.|++|++.... .......+..+ ......++|+|++. +
T Consensus 141 ~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g------------------~~~~~~~~~~~~g~~p~~~~~spdg~-~ 200 (347)
T 3hfq_A 141 SHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAG------------------QLSEQSVLTMEAGFGPRHLVFSPDGQ-Y 200 (347)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEEEECTTS------------------CEEEEEEEECCTTCCEEEEEECTTSS-E
T ss_pred CCceEEEECCCCc-EEEEeCCCCEEEEEEECCCC------------------cEEEeeeEEcCCCCCCceEEECCCCC-E
Confidence 3588999999995 88888889999999998310 00111222222 23677899999997 5
Q ss_pred EEE-EeCCCcEEEEecCCC-CCcccCCCccccC------CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC--CeeE
Q 018322 245 LVT-GDCNSCIYLWEPASD-ATWNVDPNPFIGH------SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SALT 314 (358)
Q Consensus 245 l~s-gs~dg~I~lwd~~~~-~~~~~~~~~~~~h------~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~--~~~~ 314 (358)
|++ +..++.|.+|++... +... ....+... ...+..++|+|+++.+++++..++.|.+|++.... ..+.
T Consensus 201 l~v~~~~~~~v~v~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~ 279 (347)
T 3hfq_A 201 AFLAGELSSQIASLKYDTQTGAFT-QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQ 279 (347)
T ss_dssp EEEEETTTTEEEEEEEETTTTEEE-EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEE
T ss_pred EEEEeCCCCEEEEEEecCCCCceE-EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeE
Confidence 555 567889999998742 2211 01111111 14588999999999566778889999999997422 2344
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEe-CCCCEEEEeC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGS-DDGTFSIHDL 350 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDl 350 (358)
.+..+...+..++|+|++ .+|++++ .++.|.+|++
T Consensus 280 ~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 280 QISTEGDFPRDFDLDPTE-AFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEECSSSCCCEEEECTTS-SEEEEEETTTTEEEEEEE
T ss_pred EEecCCCCcCeEEECCCC-CEEEEEEcCCCcEEEEEE
Confidence 455666778999999999 6666665 4589999944
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-13 Score=141.19 Aligned_cols=159 Identities=12% Similarity=-0.030 Sum_probs=128.0
Q ss_pred EecCCC-ceeEEEEcCCCCcEEEEEeCCCcEE-EEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 161 KVAHQG-CVNRIRAMTQNPHICASWADTGHVQ-VWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 161 ~~~H~~-~V~~i~~~p~~~~~lat~s~dg~V~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
+..|.+ .+..+.|+ ++ ..|++++.++.|. +|++.. .. ...+.+|...+.+++|+
T Consensus 332 ~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~---------------------~~-~~~l~~~~~~~~~~~~S 387 (1045)
T 1k32_A 332 VPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRT---------------------GK-AEKFEENLGNVFAMGVD 387 (1045)
T ss_dssp CSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTT---------------------CC-EEECCCCCCSEEEEEEC
T ss_pred ccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCC---------------------CC-ceEecCCccceeeeEEC
Confidence 456777 89999999 77 6788888888888 888865 22 23344777899999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC----------cEEEEECCC
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG----------HIAIWDTRV 308 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg----------~I~iwD~r~ 308 (358)
|++. +|++++.++.|++||+.++ ... ....+|...+.+++|+|+++ .|++++.++ .|++||+.+
T Consensus 388 pDG~-~la~~~~~~~v~~~d~~tg-~~~---~~~~~~~~~v~~~~~SpDG~-~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 388 RNGK-FAVVANDRFEIMTVDLETG-KPT---VIERSREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp TTSS-EEEEEETTSEEEEEETTTC-CEE---EEEECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred CCCC-EEEEECCCCeEEEEECCCC-ceE---EeccCCCCCccceEECCCCC-eEEEEecCccccccCCCCCeEEEEECCC
Confidence 9998 9999999999999999764 322 23447888999999999999 777776544 999999987
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 309 GKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+ ....+..|...+..++|+|+| ..|++++.++...+|+...
T Consensus 462 g--~~~~l~~~~~~~~~~~~spdG-~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 462 R--KIFAATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp T--EEEECSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSS
T ss_pred C--cEEEeeCCCcccCCceEcCCC-CEEEEEecccCCcCcchhc
Confidence 4 366677888889999999999 8888888888888888654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.50 E-value=8.4e-13 Score=133.27 Aligned_cols=161 Identities=9% Similarity=0.035 Sum_probs=107.8
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC------------
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD------------ 230 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------ 230 (358)
.|...+..++|+|++ +.||+++. +.|++||+.. .........+..
T Consensus 111 ~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~---------------------g~~~~~~~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 111 VSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVG---------------------KQAIRVVSTGKEGVIYNGLSDWLY 167 (723)
T ss_dssp CCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSS---------------------SCCEEEECCCBTTTEEEEECCHHH
T ss_pred cccccccccEECCCC-CEEEEEEC-CeEEEEECCC---------------------CceEEEecCCCCCceECcccceeE
Confidence 355568999999999 67777776 7999999976 233333333222
Q ss_pred ------CeEEEEeCCCCCCeEEEEeCCC----------------------------------cEEEEecCCCCCcccCC-
Q 018322 231 ------EGYAIDWNPITTGRLVTGDCNS----------------------------------CIYLWEPASDATWNVDP- 269 (358)
Q Consensus 231 ------~v~~l~~s~~~~~~l~sgs~dg----------------------------------~I~lwd~~~~~~~~~~~- 269 (358)
.+.+++|+|++. +|++++.++ .|++||+.++.......
T Consensus 168 ~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~ 246 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP 246 (723)
T ss_dssp HHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC
T ss_pred EEEeccCcceEEECCCCC-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeC
Confidence 237899999998 888887543 79999997643211100
Q ss_pred -CccccCCCcEEEEEECCCCCCEEEEEEC----CCcEEEEECCCCCCeeEEEe-cCCCCeE----EEEEeCCCCcEEEE-
Q 018322 270 -NPFIGHSASVEDLQWSPTEPDVFASCSV----DGHIAIWDTRVGKSALTSFK-AHNADVN----VISWNRLASCLLAS- 338 (358)
Q Consensus 270 -~~~~~h~~~V~~v~~sp~~~~~las~s~----Dg~I~iwD~r~~~~~~~~~~-~h~~~V~----~i~~~p~~~~~las- 338 (358)
..+..+...+.+++|+|+++ ++++.+. +..|++||+.++. +...+. .+...+. .++|+|+|..+++.
T Consensus 247 ~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 324 (723)
T 1xfd_A 247 PDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTGV-CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR 324 (723)
T ss_dssp CCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTCC-EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE
T ss_pred CccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCCCc-ceEEEEeccCCEEeccCCCceEcCCCCeEEEEE
Confidence 11223467899999999998 6766543 3589999998853 333332 3444443 78999999545544
Q ss_pred EeCCC------CEEEEe
Q 018322 339 GSDDG------TFSIHD 349 (358)
Q Consensus 339 gs~Dg------~i~iwD 349 (358)
+..++ .|.+||
T Consensus 325 ~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 325 AIPQGGRGKFYHITVSS 341 (723)
T ss_dssp EECCSSSSCEEEEEEEC
T ss_pred ecccCCCcceeEEEEEe
Confidence 55677 577788
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.49 E-value=9.8e-12 Score=114.81 Aligned_cols=203 Identities=10% Similarity=0.014 Sum_probs=133.3
Q ss_pred eEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCce
Q 018322 89 TAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCV 168 (358)
Q Consensus 89 ~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V 168 (358)
..++.+||.+.+ ..+.|+++.+.. + .......... |...+
T Consensus 13 ~~~~~vg~y~~~-~~~~i~~~~~d~-------------------------------~-------~g~~~~~~~~-~~~~p 52 (361)
T 3scy_A 13 ELTMLVGTYTSG-NSKGIYTFRFNE-------------------------------E-------TGESLPLSDA-EVANP 52 (361)
T ss_dssp EEEEEEEECCSS-SCCEEEEEEEET-------------------------------T-------TCCEEEEEEE-ECSCC
T ss_pred ceEEEEEeccCC-CCCCEEEEEEeC-------------------------------C-------CCCEEEeecc-cCCCC
Confidence 578899999875 567899999831 0 0111222333 77888
Q ss_pred eEEEEcCCCCcEEEEEeCC----CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 169 NRIRAMTQNPHICASWADT----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 169 ~~i~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
..++|+|++ .+|++++.+ +.|.+|++...... ...+.....+......+++ ++. +
T Consensus 53 ~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~-----------------~~~~~~~~~~~~~p~~~~~--dg~-~ 111 (361)
T 3scy_A 53 SYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGT-----------------LHLLNTQKTMGADPCYLTT--NGK-N 111 (361)
T ss_dssp CSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTE-----------------EEEEEEEECSSSCEEEEEE--CSS-E
T ss_pred ceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCc-----------------EEEeeEeccCCCCcEEEEE--CCC-E
Confidence 999999999 566666665 79999998752100 1223334445556777888 665 6
Q ss_pred EEEEe-CCCcEEEEecCCCCCcccCCCc----------cccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC--
Q 018322 245 LVTGD-CNSCIYLWEPASDATWNVDPNP----------FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-- 311 (358)
Q Consensus 245 l~sgs-~dg~I~lwd~~~~~~~~~~~~~----------~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-- 311 (358)
|++++ .++.|.+|++...+........ ...+...+.+++|+|+++.+++++..++.|++|++.....
T Consensus 112 l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~ 191 (361)
T 3scy_A 112 IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANAD 191 (361)
T ss_dssp EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcc
Confidence 66655 6889999999764432111000 1112344688999999985566666689999999876432
Q ss_pred ----e------eEEEecCCCCeEEEEEeCCCCcEEEEEe-CCCCEEEEeCCCC
Q 018322 312 ----A------LTSFKAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLL 353 (358)
Q Consensus 312 ----~------~~~~~~h~~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDlr~~ 353 (358)
. ......+...+..++|+|++ .+|++++ .++.|.+||+.+.
T Consensus 192 ~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 192 NKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp TCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETT
T ss_pred cccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCC
Confidence 1 11123445668899999999 6555555 6899999998754
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.8e-13 Score=133.71 Aligned_cols=177 Identities=10% Similarity=0.081 Sum_probs=116.5
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCC-----CccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRS-----HLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
.+..|.+.+..++|+|++ ..||++ .++.|++|++.. ......... .........+ ....+...+.+
T Consensus 115 ~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~-----~~~~~~~g~~--~~~ee~~~~~~ 185 (706)
T 2z3z_A 115 YLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTID-----GTETLVYGQA--VHQREFGIEKG 185 (706)
T ss_dssp EEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSC-----CBTTEEESSC--CGGGCTTCCCS
T ss_pred EccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEEeccC-----CCCCeEcccc--hhhhhcCCCce
Confidence 345677889999999999 567774 679999999875 211000000 0000000000 01111223579
Q ss_pred EEeCCCCCCeEEEEe---------------------------------CCCcEEEEecCCCCCcccCCCccccCCCcEEE
Q 018322 235 IDWNPITTGRLVTGD---------------------------------CNSCIYLWEPASDATWNVDPNPFIGHSASVED 281 (358)
Q Consensus 235 l~~s~~~~~~l~sgs---------------------------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~ 281 (358)
++|+|++. +|++++ .+..|++||+.++.... ......|...+.+
T Consensus 186 ~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~--~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 186 TFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY--LQTGEPKEKFLTN 262 (706)
T ss_dssp EEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE--CCCCSCTTCEEEE
T ss_pred EEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe--eccCCCCceeEee
Confidence 99999998 888887 45689999997633211 1112346778999
Q ss_pred EEECCCCCCEEEEEECCC-----cEEEEECCCCCCeeEEE--ecCCC---CeEEEEEeC--CCCcEEEEEeCCCCEEEEe
Q 018322 282 LQWSPTEPDVFASCSVDG-----HIAIWDTRVGKSALTSF--KAHNA---DVNVISWNR--LASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 282 v~~sp~~~~~las~s~Dg-----~I~iwD~r~~~~~~~~~--~~h~~---~V~~i~~~p--~~~~~lasgs~Dg~i~iwD 349 (358)
++|+|++. .|++++.++ .|++||+.++. ....+ ..+.. .++.++|+| ++ .+|++++.+|.++||+
T Consensus 263 ~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 263 LSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGR-FVRTLFVETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEECTTSS-EEEEEEECTTSCEEEEEEEETTTCC-EEEEEEEEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEE
T ss_pred EEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCc-eeeEEEEccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEE
Confidence 99999998 788777765 99999999852 22222 22222 246789999 99 7999999999999998
Q ss_pred CC
Q 018322 350 LR 351 (358)
Q Consensus 350 lr 351 (358)
+.
T Consensus 340 ~~ 341 (706)
T 2z3z_A 340 YD 341 (706)
T ss_dssp EE
T ss_pred EE
Confidence 75
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-12 Score=117.12 Aligned_cols=113 Identities=11% Similarity=0.104 Sum_probs=82.1
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC-C----CCCeEEEEeCCCC
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-H----KDEGYAIDWNPIT 241 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h----~~~v~~l~~s~~~ 241 (358)
.+..+.|+|++..++++++.++.|.+||+.. .+.+..+.. + ...+.+++|+|++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~s~dg 93 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT---------------------GETLGRIDLSTPEERVKSLFGAALSPDG 93 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTT---------------------CCEEEEEECCBTTEEEECTTCEEECTTS
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCC---------------------CCeEeeEEcCCcccccccccceEECCCC
Confidence 5889999999966778888889999999976 233333332 1 1256789999999
Q ss_pred CCeEEEEe------------CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 242 TGRLVTGD------------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 242 ~~~l~sgs------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
. +|++++ .++.|.+||+.+. ... ..+. ....+.+++|+|++. .++++ ++.|++||+.++
T Consensus 94 ~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~---~~~~-~~~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~ 164 (337)
T 1pby_B 94 K-TLAIYESPVRLELTHFEVQPTRVALYDAETL-SRR---KAFE-APRQITMLAWARDGS-KLYGL--GRDLHVMDPEAG 164 (337)
T ss_dssp S-EEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEE---EEEE-CCSSCCCEEECTTSS-CEEEE--SSSEEEEETTTT
T ss_pred C-EEEEEecccccccccccccCceEEEEECCCC-cEE---EEEe-CCCCcceeEECCCCC-EEEEe--CCeEEEEECCCC
Confidence 8 888775 5799999999763 221 2222 234578899999998 45555 689999998763
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-13 Score=136.16 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=108.0
Q ss_pred ceeEEEEcCCCCcEEEEEeC---------CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 167 CVNRIRAMTQNPHICASWAD---------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~---------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
.|.+++|+|++ +.||+++. ++.|++||+...... .... + ...+.+++|
T Consensus 61 ~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~----------------~~~~---l---~~~~~~~~~ 117 (719)
T 1z68_A 61 NASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNGEFV----------------RGNE---L---PRPIQYLCW 117 (719)
T ss_dssp TCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTTEEC----------------CSSC---C---CSSBCCEEE
T ss_pred ceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCCccc----------------ccee---c---CcccccceE
Confidence 49999999999 67777765 789999999762110 0011 1 245788999
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcE-----------------EEEEECCCCCCEEEEEECCC-
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASV-----------------EDLQWSPTEPDVFASCSVDG- 299 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V-----------------~~v~~sp~~~~~las~s~Dg- 299 (358)
||+|. +||.+. ++.|++|++.++.... ....++...| .+++|||+++ .||+++.|.
T Consensus 118 SPDG~-~la~~~-~~~i~~~~~~~g~~~~---l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~ 191 (719)
T 1z68_A 118 SPVGS-KLAYVY-QNNIYLKQRPGDPPFQ---ITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDT 191 (719)
T ss_dssp CSSTT-CEEEEE-TTEEEEESSTTSCCEE---CCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECT
T ss_pred CCCCC-EEEEEE-CCeEEEEeCCCCCcEE---EecCCCcCCeEcccccceeeeecccCcccEEECCCCC-EEEEEEECCC
Confidence 99998 888886 7899999997643211 1112222222 4899999999 888877552
Q ss_pred ---------------------------------cEEEEECCCCCCee--EE------EecCCCCeEEEEEeCCCCcEEEE
Q 018322 300 ---------------------------------HIAIWDTRVGKSAL--TS------FKAHNADVNVISWNRLASCLLAS 338 (358)
Q Consensus 300 ---------------------------------~I~iwD~r~~~~~~--~~------~~~h~~~V~~i~~~p~~~~~las 338 (358)
.|++||+.++. .. .. +..|...+..++|+|++ .++++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~ 269 (719)
T 1z68_A 192 DIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA-YVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQ 269 (719)
T ss_dssp TSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH-HHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEE
T ss_pred CCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC-ccceeEccCCccCCCCcceEEEeEEeCCC-eEEEE
Confidence 78899998743 21 12 23577789999999997 78877
Q ss_pred EeCCC----CEEEEe----CCCC
Q 018322 339 GSDDG----TFSIHD----LRLL 353 (358)
Q Consensus 339 gs~Dg----~i~iwD----lr~~ 353 (358)
....+ .|.+|| +.++
T Consensus 270 ~~~~~~~~~~l~~~d~~~~~~~g 292 (719)
T 1z68_A 270 WLKRVQNVSVLSICDFREDWQTW 292 (719)
T ss_dssp EEESSTTEEEEEEEEECSSSSSE
T ss_pred EeccccCeEEEEEEcccCCCCCC
Confidence 54332 488899 6554
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.9e-13 Score=139.35 Aligned_cols=157 Identities=10% Similarity=0.016 Sum_probs=124.6
Q ss_pred CCCceeEEEEc-CCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC-CeEEEEeCCCC
Q 018322 164 HQGCVNRIRAM-TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~-p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~ 241 (358)
|.+.|..+.|+ |++ ..||+++ ++.|++|++.. .....+..|.. .+.+++|+ ++
T Consensus 294 ~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~s-dg 348 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSG----------------------TYVLKVPEPLRIRYVRRGGD-TK 348 (1045)
T ss_dssp ECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTS----------------------SBEEECSCCSCEEEEEECSS-SE
T ss_pred cccccceeeecCCCC-CEEEEEE-cCEEEEEcCCC----------------------CceEEccCCCcceEEeeeEc-CC
Confidence 45579999999 999 5666666 78999999875 22334566777 89999999 88
Q ss_pred CCeEEEEeCCCcEE-EEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC
Q 018322 242 TGRLVTGDCNSCIY-LWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 242 ~~~l~sgs~dg~I~-lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
. .|++++.++.|. +|++... .. ..+.+|...+..++|+|++. .|++++.++.|++||+.++ ........|.
T Consensus 349 ~-~l~~~s~~~~l~~~~d~~~~-~~----~~l~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~tg-~~~~~~~~~~ 420 (1045)
T 1k32_A 349 V-AFIHGTREGDFLGIYDYRTG-KA----EKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETG-KPTVIERSRE 420 (1045)
T ss_dssp E-EEEEEETTEEEEEEEETTTC-CE----EECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTC-CEEEEEECSS
T ss_pred C-eEEEEECCCceEEEEECCCC-Cc----eEecCCccceeeeEECCCCC-EEEEECCCCeEEEEECCCC-ceEEeccCCC
Confidence 7 888888888888 8898653 22 22337788999999999999 9999999999999999885 3444455788
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCC----------CEEEEeCCCCC
Q 018322 321 ADVNVISWNRLASCLLASGSDDG----------TFSIHDLRLLK 354 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg----------~i~iwDlr~~~ 354 (358)
..+..++|+|++ .+|++++.++ .|++||+.+.+
T Consensus 421 ~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 421 AMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp SCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCccceEECCCC-CeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 899999999999 7777776543 89999998754
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=132.00 Aligned_cols=162 Identities=11% Similarity=0.136 Sum_probs=114.6
Q ss_pred CceeEEEEcCCCCcEEEEEe---------------------------------CCCcEEEEeCCCCccccccccccccCC
Q 018322 166 GCVNRIRAMTQNPHICASWA---------------------------------DTGHVQVWDLRSHLNALAESETIVGQG 212 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s---------------------------------~dg~V~iwd~~~~~~~~~~~~~~~~~~ 212 (358)
+.+.++.|+|++ ..||+++ .+..|++||+...
T Consensus 181 ~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~-------------- 245 (706)
T 2z3z_A 181 GIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG-------------- 245 (706)
T ss_dssp TCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT--------------
T ss_pred CCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC--------------
Confidence 346899999999 6777776 4467999998762
Q ss_pred CCCCCCCCCcEEE--cCCCCCeEEEEeCCCCCCeEEEEeCCC-----cEEEEecCCCCCcccCCCccc-cCC---CcEEE
Q 018322 213 APQVSNQSPLVKF--GGHKDEGYAIDWNPITTGRLVTGDCNS-----CIYLWEPASDATWNVDPNPFI-GHS---ASVED 281 (358)
Q Consensus 213 ~~~~~~~~~~~~~--~~h~~~v~~l~~s~~~~~~l~sgs~dg-----~I~lwd~~~~~~~~~~~~~~~-~h~---~~V~~ 281 (358)
...... ..|...+.+++|+|++. +|++++.++ .|++||+.++.... .... .+. ..+.+
T Consensus 246 -------~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~---~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 246 -------KTVYLQTGEPKEKFLTNLSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVR---TLFVETDKHYVEPLHP 314 (706)
T ss_dssp -------EEEECCCCSCTTCEEEEEEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEE---EEEEEECSSCCCCCSC
T ss_pred -------ceEeeccCCCCceeEeeEEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceee---EEEEccCCCeECccCC
Confidence 111111 24667789999999998 888877665 99999997742221 1111 122 23467
Q ss_pred EEECC--CCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEE-EEEeCCCCcEEEEEeCCC----CEEEEeCCCCC
Q 018322 282 LQWSP--TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV-ISWNRLASCLLASGSDDG----TFSIHDLRLLK 354 (358)
Q Consensus 282 v~~sp--~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~-i~~~p~~~~~lasgs~Dg----~i~iwDlr~~~ 354 (358)
++|+| ++. ++++++.++.++||.+......+..+..|...+.. ++|+|++..++++++.++ .|..||+.+.+
T Consensus 315 ~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 315 LTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp CEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred ceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 89999 998 88999999999999886333466677777777876 799999945556666655 67777776654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-12 Score=125.54 Aligned_cols=202 Identities=9% Similarity=-0.030 Sum_probs=136.7
Q ss_pred cccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 64 HIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDED 143 (358)
Q Consensus 64 ~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (358)
....|+.++.+.||+ .+|+.+... ++.+.||.+.
T Consensus 19 ~~~~~~~~~~~~~DG-----------~~la~~s~~----~g~~~lw~~~------------------------------- 52 (582)
T 3o4h_A 19 LIAVEKYSLQGVVDG-----------DKLLVVGFS----EGSVNAYLYD------------------------------- 52 (582)
T ss_dssp HHHSCEEEEEEEETT-----------TEEEEEEEE----TTEEEEEEEE-------------------------------
T ss_pred HhccchheeecCCCC-----------CeEEEEEcc----CCceeEEEEc-------------------------------
Confidence 346789999999996 356655532 3478888762
Q ss_pred CCCccCCCCCCCeEEEEEecCC-CceeEEEEcCCCCcEEEEEeC---CCcEEEEeCCCCccccccccccccCCCCCCCCC
Q 018322 144 SDDDEEGGSGTPILQLRKVAHQ-GCVNRIRAMTQNPHICASWAD---TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ 219 (358)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~H~-~~V~~i~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (358)
.... .++..|. ..|..+.|+|+ .++++++. +...+||.+.... ..
T Consensus 53 ----------~g~~-~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~------------------~g 101 (582)
T 3o4h_A 53 ----------GGET-VKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSR------------------PG 101 (582)
T ss_dssp ----------TTEE-EECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTS------------------TT
T ss_pred ----------CCCc-EeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccC------------------CC
Confidence 1111 2334555 68999999997 57777765 4555666553300 01
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD- 298 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D- 298 (358)
... .+..+. ....++|+|++.+.+++.+.++.+.+||+.++ .. ..+..+.. .+++|+|+|+ .+++++.+
T Consensus 102 ~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-~~----~~l~~~~~--~~~~~spDG~-~la~~~~~~ 171 (582)
T 3o4h_A 102 EEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGG-GL----RELARLPG--FGFVSDIRGD-LIAGLGFFG 171 (582)
T ss_dssp CCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETT-EE----EEEEEESS--CEEEEEEETT-EEEEEEEEE
T ss_pred ccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCC-cE----EEeecCCC--ceEEECCCCC-EEEEEEEcC
Confidence 111 222222 33466888888765555555556669999763 22 22333333 7899999999 88877777
Q ss_pred ---CcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCC--CEEEEeCCCCCC
Q 018322 299 ---GHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKV 355 (358)
Q Consensus 299 ---g~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg--~i~iwDlr~~~~ 355 (358)
+.|++||+.++. ...+..|...++.++|+|+| ..|++++.++ .|++||+.+.+.
T Consensus 172 ~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~~ 230 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGG--LRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGSV 230 (582)
T ss_dssp TTEEEEEEEETTTCC--CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCCE
T ss_pred CCCeEEEEEcCCCCC--ceEeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCcE
Confidence 789999998753 44677888889999999999 8888888888 899999987653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-11 Score=114.20 Aligned_cols=168 Identities=11% Similarity=0.067 Sum_probs=109.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc----c-cccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN----A-LAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
..+.++.|+|++..++++...++.|++|++..... . +... .........+.....+++|+|+
T Consensus 155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~~~~~~~~~~~spd 221 (361)
T 3scy_A 155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK-------------GTPEAFKVAPGSGPRHLIFNSD 221 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE-------------EEEEEEECCTTCCEEEEEECTT
T ss_pred CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec-------------ccccceecCCCCCCeEEEEcCC
Confidence 34688999999955667776789999999876210 0 0000 0001112233456789999999
Q ss_pred CCCeEEEEe-CCCcEEEEecCCCCCcc--cCCCccccCCCcEEEEEECCCCCCEEEEEEC-CCcEEEEECCC--CCC-ee
Q 018322 241 TTGRLVTGD-CNSCIYLWEPASDATWN--VDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRV--GKS-AL 313 (358)
Q Consensus 241 ~~~~l~sgs-~dg~I~lwd~~~~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~--~~~-~~ 313 (358)
+. +|++++ .++.|.+|++.+ +... ........+...+.+++|+|+++.++++... ++.|.+|++.. +.. .+
T Consensus 222 g~-~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~ 299 (361)
T 3scy_A 222 GK-FAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKV 299 (361)
T ss_dssp SS-EEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEE
T ss_pred CC-EEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEe
Confidence 98 776666 689999999975 3211 0011222344567899999999944455555 68999999963 221 23
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEe-CCCCEEEEeC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGS-DDGTFSIHDL 350 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDl 350 (358)
..+.. ...+..++|+|++ .+|++++ .++.|.+|.+
T Consensus 300 ~~~~~-g~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 300 GYQLT-GIHPRNFIITPNG-KYLLVACRDTNVIQIFER 335 (361)
T ss_dssp EEEEC-SSCCCEEEECTTS-CEEEEEETTTTEEEEEEE
T ss_pred eEecC-CCCCceEEECCCC-CEEEEEECCCCCEEEEEE
Confidence 33333 5578899999999 6666665 6789999644
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.7e-12 Score=113.47 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=81.4
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC-C-----CCCeEEEEeCCC
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-H-----KDEGYAIDWNPI 240 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h-----~~~v~~l~~s~~ 240 (358)
.+..+.|+|++..++++...++.|.+||+.. .+.+..+.. + ...+.+++|+|+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t---------------------~~~~~~~~~~~~~~~~~~~~~~~~~spd 102 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---------------------CKNTFHANLSSVPGEVGRSMYSFAISPD 102 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTT---------------------TEEEEEEESCCSTTEEEECSSCEEECTT
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCC---------------------CcEEEEEEcccccccccccccceEECCC
Confidence 6889999999955667777889999999976 233333332 2 123678999999
Q ss_pred CCCeEEEEeCC------------CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 241 TTGRLVTGDCN------------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 241 ~~~~l~sgs~d------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
+. +|++++.+ +.|.+||+.++. .......+ .+...+.+++|+|++. +++ + ++.|++||+.+
T Consensus 103 g~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~-~~~~~~~~~~~s~dg~-l~~-~--~~~i~~~d~~~ 175 (349)
T 1jmx_B 103 GK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGL-EAKPVRTF-PMPRQVYLMRAADDGS-LYV-A--GPDIYKMDVKT 175 (349)
T ss_dssp SS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGG-GBCCSEEE-ECCSSCCCEEECTTSC-EEE-E--SSSEEEECTTT
T ss_pred CC-EEEEEcccccccccccccCCCeEEEEECCCcc-ccceeeec-cCCCcccceeECCCCc-EEE-c--cCcEEEEeCCC
Confidence 98 88888755 899999997632 11111122 2344688999999998 666 3 34499999987
Q ss_pred C
Q 018322 309 G 309 (358)
Q Consensus 309 ~ 309 (358)
+
T Consensus 176 ~ 176 (349)
T 1jmx_B 176 G 176 (349)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-11 Score=112.18 Aligned_cols=158 Identities=10% Similarity=0.061 Sum_probs=105.9
Q ss_pred ceeEEEEcCCCCcEEEEEeCC------------CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE
Q 018322 167 CVNRIRAMTQNPHICASWADT------------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA 234 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~d------------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 234 (358)
.+..+.|+|++ .++++++.+ +.|.+||+..... ...+..+..+ ..+.+
T Consensus 93 ~~~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------------~~~~~~~~~~-~~~~~ 152 (349)
T 1jmx_B 93 SMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE------------------AKPVRTFPMP-RQVYL 152 (349)
T ss_dssp CSSCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG------------------BCCSEEEECC-SSCCC
T ss_pred cccceEECCCC-CEEEEEcccccccccccccCCCeEEEEECCCccc------------------cceeeeccCC-Ccccc
Confidence 47899999999 566666644 8999999875210 1233334333 36889
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcc------------------------------------------
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF------------------------------------------ 272 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~------------------------------------------ 272 (358)
++|+|++. +++ ++ +.|.+||+.++..........
T Consensus 153 ~~~s~dg~-l~~-~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 153 MRAADDGS-LYV-AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp EEECTTSC-EEE-ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred eeECCCCc-EEE-cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 99999997 555 43 349999987643211000000
Q ss_pred ----------------------ccCCCcEEEEEECC-CCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEe
Q 018322 273 ----------------------IGHSASVEDLQWSP-TEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329 (358)
Q Consensus 273 ----------------------~~h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~ 329 (358)
..+...+.+++|+| ++. .++++ ++.|.+||+.++ ..+..+. ....+.+++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~-~l~~~--~~~v~~~d~~~~-~~~~~~~-~~~~~~~~~~s 303 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV--LNRLAKYDLKQR-KLIKAAN-LDHTYYCVAFD 303 (349)
T ss_dssp CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE--ESEEEEEETTTT-EEEEEEE-CSSCCCEEEEC
T ss_pred cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC-EEEEE--cCeEEEEECccC-eEEEEEc-CCCCccceEEC
Confidence 00112456788899 888 66666 889999999884 3444444 33457899999
Q ss_pred CCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 330 RLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 330 p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|++ .+|++++.++.|.+||+++++
T Consensus 304 ~dg-~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 304 KKG-DKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp SSS-SCEEEESBSSEEEEEETTTTE
T ss_pred CCC-CEEEEecCCCeEEEEeccccc
Confidence 999 666667888999999998764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-13 Score=130.45 Aligned_cols=150 Identities=11% Similarity=0.038 Sum_probs=114.3
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 246 (358)
.+....|+|++..++++.+.++.+.|||+.. ........ +.. .+++|+|+|. +|+
T Consensus 111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~---------------------g~~~~l~~-~~~--~~~~~spDG~-~la 165 (582)
T 3o4h_A 111 PMRILSGVDTGEAVVFTGATEDRVALYALDG---------------------GGLRELAR-LPG--FGFVSDIRGD-LIA 165 (582)
T ss_dssp SBEEEEEEECSSCEEEEEECSSCEEEEEEET---------------------TEEEEEEE-ESS--CEEEEEEETT-EEE
T ss_pred CceeeeeCCCCCeEEEEecCCCCceEEEccC---------------------CcEEEeec-CCC--ceEEECCCCC-EEE
Confidence 3446688888755555555555666999865 22222222 222 7899999998 898
Q ss_pred EEeCC----CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC--cEEEEECCCCCCeeEEEecCC
Q 018322 247 TGDCN----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--HIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 247 sgs~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--~I~iwD~r~~~~~~~~~~~h~ 320 (358)
+++.+ +.|++||+.++.. ..+..|...+..++|+|+++ .|+++..++ .|++||+.++. .. .+..|.
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~~-----~~l~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~i~~~d~~~~~-~~-~~~~~~ 237 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGGL-----RVFDSGEGSFSSASISPGMK-VTAGLETAREARLVTVDPRDGS-VE-DLELPS 237 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCCC-----EEECCSSCEEEEEEECTTSC-EEEEEECSSCEEEEEECTTTCC-EE-ECCCSC
T ss_pred EEEEcCCCCeEEEEEcCCCCCc-----eEeecCCCccccceECCCCC-EEEEccCCCeeEEEEEcCCCCc-EE-EccCCC
Confidence 77766 7899999876432 35677888899999999999 788888888 89999998753 44 566777
Q ss_pred CCeEEEE--------EeCCCCcEEEEEeCCCCEEEEeC
Q 018322 321 ADVNVIS--------WNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 321 ~~V~~i~--------~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
..+..++ |+|++ .++++++.+|+++||++
T Consensus 238 ~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFID 274 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEET
T ss_pred cChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEEE
Confidence 7777777 99999 99999999999999998
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=132.35 Aligned_cols=141 Identities=9% Similarity=0.170 Sum_probs=99.7
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC---CeEEEEeCCCCCCeEE
Q 018322 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD---EGYAIDWNPITTGRLV 246 (358)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~~l~ 246 (358)
.++|+|++ .++++ +.+++|++||+.. ..+...+.+|.. .+.+++|||++. +|+
T Consensus 20 ~~~~s~dg-~~~~~-~~d~~i~~~~~~~---------------------g~~~~~~~~~~~~~~~~~~~~~SpDg~-~la 75 (719)
T 1z68_A 20 FPNWISGQ-EYLHQ-SADNNIVLYNIET---------------------GQSYTILSNRTMKSVNASNYGLSPDRQ-FVY 75 (719)
T ss_dssp CCEESSSS-EEEEE-CTTSCEEEEESSS---------------------CCEEEEECHHHHHTTTCSEEEECTTSS-EEE
T ss_pred ccEECCCC-eEEEE-cCCCCEEEEEcCC---------------------CcEEEEEccccccccceeeEEECCCCC-eEE
Confidence 67899999 56655 4699999999987 344444544432 388999999998 888
Q ss_pred EEeC---------CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 247 TGDC---------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 247 sgs~---------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
+++. ++.|++||+.++ .... ...+ ...+.+++|||+|+ .||++. ++.|++||+.++........
T Consensus 76 ~~~~~~~~~~~s~~~~i~~~d~~~g-~~~~-~~~l---~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 76 LESDYSKLWRYSYTATYYIYDLSNG-EFVR-GNEL---PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTT-EECC-SSCC---CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCCC
T ss_pred EEecCceeEEeecceEEEEEECCCC-cccc-ceec---CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEecC
Confidence 8876 689999999763 2210 0112 24688899999999 777775 78999999987542211112
Q ss_pred cCCCCe-----------------EEEEEeCCCCcEEEEEeCC
Q 018322 318 AHNADV-----------------NVISWNRLASCLLASGSDD 342 (358)
Q Consensus 318 ~h~~~V-----------------~~i~~~p~~~~~lasgs~D 342 (358)
++...| .+++|+|+| ..||+++.|
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d 189 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFN 189 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEE
T ss_pred CCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEEC
Confidence 332222 489999999 888887755
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=3.5e-11 Score=122.22 Aligned_cols=156 Identities=13% Similarity=0.174 Sum_probs=107.3
Q ss_pred eEEEEcCCCCcEEEEEeCC---------CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 169 NRIRAMTQNPHICASWADT---------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 169 ~~i~~~p~~~~~lat~s~d---------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
+.+.|+|++ ..|+.++.+ +.+.|||+... + ...+..|...+...+|||
T Consensus 65 ~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~---------------------~-~~~l~~~~~~~~~~~~SP 121 (740)
T 4a5s_A 65 NDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKR---------------------Q-LITEERIPNNTQWVTWSP 121 (740)
T ss_dssp CEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTT---------------------E-ECCSSCCCTTEEEEEECS
T ss_pred cceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCC---------------------c-EEEcccCCCcceeeEECC
Confidence 458899999 677777765 56779999872 2 223456677899999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCc-----------------EEEEEECCCCCCEEEEEECCC---
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS-----------------VEDLQWSPTEPDVFASCSVDG--- 299 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~-----------------V~~v~~sp~~~~~las~s~Dg--- 299 (358)
+|. .||.+. ++.|++|++..+.... .+..++... ...+.|||+|. .||.++.|.
T Consensus 122 dG~-~la~~~-~~~i~~~~~~~~~~~~---lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v 195 (740)
T 4a5s_A 122 VGH-KLAYVW-NNDIYVKIEPNLPSYR---ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEV 195 (740)
T ss_dssp STT-CEEEEE-TTEEEEESSTTSCCEE---CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTC
T ss_pred CCC-EEEEEE-CCeEEEEECCCCceEE---EcCCCCccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCC
Confidence 998 888886 7899999997643221 112222222 23589999999 777765332
Q ss_pred ---------------------------------cEEEEECCC---CCC-eeEEEe------cCCCCeEEEEEeCCCCcEE
Q 018322 300 ---------------------------------HIAIWDTRV---GKS-ALTSFK------AHNADVNVISWNRLASCLL 336 (358)
Q Consensus 300 ---------------------------------~I~iwD~r~---~~~-~~~~~~------~h~~~V~~i~~~p~~~~~l 336 (358)
.|++||+.+ +.. ....+. .|...+..++|+|++ .++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~ 274 (740)
T 4a5s_A 196 PLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RIS 274 (740)
T ss_dssp CEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEE
T ss_pred ceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEE
Confidence 478888876 521 223343 277779999999999 665
Q ss_pred EEEeC----CCCEEEEeCCCCC
Q 018322 337 ASGSD----DGTFSIHDLRLLK 354 (358)
Q Consensus 337 asgs~----Dg~i~iwDlr~~~ 354 (358)
+.... +..|.+||+.+++
T Consensus 275 ~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 275 LQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEEEESSTTEEEEEEEEEETTT
T ss_pred EEEeCCCCCEEEEEEEECCCCc
Confidence 55432 3479999988765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-11 Score=111.94 Aligned_cols=163 Identities=7% Similarity=0.018 Sum_probs=108.0
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCC-CCccccccccccccCCCCCCCCCCCcE--EEcCCCCCeEEEEeCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLR-SHLNALAESETIVGQGAPQVSNQSPLV--KFGGHKDEGYAIDWNP 239 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~s~ 239 (358)
.....+..+.|+|++ .+|++++.+ .|.+|++. . ..... ....+. ...+++|+|
T Consensus 37 ~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~---------------------g~~~~~~~~~~~g-~~~~~~~sp 92 (365)
T 1jof_A 37 PQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSP---------------------TEIVHEASHPIGG-HPRANDADT 92 (365)
T ss_dssp CTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEET---------------------TEEEEEEEEECCS-SGGGGCTTS
T ss_pred CCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCC---------------------CCEEEeeEeecCC-CCccEEECC
Confidence 344578899999999 667777776 99999986 3 11111 111112 355689999
Q ss_pred CCCC-eEEEEe-------------CCCcEEEEecCCCCCcccCCCccc-cCCCcEEEEEECCCCCCEEEEEE-CCCcEEE
Q 018322 240 ITTG-RLVTGD-------------CNSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCS-VDGHIAI 303 (358)
Q Consensus 240 ~~~~-~l~sgs-------------~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s-~Dg~I~i 303 (358)
++.. ++++++ .+|.+.+|++...+........+. .+...+.+++|+|+++ .++++. .++.|++
T Consensus 93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~ 171 (365)
T 1jof_A 93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWT 171 (365)
T ss_dssp CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEE
T ss_pred CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEE
Confidence 9862 244553 689999999975343221011111 2456799999999998 555554 4689999
Q ss_pred EECC-CCCC-eeEEEe--cCCCCeEEEEEeCCCCcEEEEEe-CCCCEEEEeCC
Q 018322 304 WDTR-VGKS-ALTSFK--AHNADVNVISWNRLASCLLASGS-DDGTFSIHDLR 351 (358)
Q Consensus 304 wD~r-~~~~-~~~~~~--~h~~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDlr 351 (358)
||+. ++.. .+..+. .|...+..++|+|++ .+|++++ .++.|.+|++.
T Consensus 172 ~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 172 HRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVID 223 (365)
T ss_dssp EEECTTSCEEEEEEEECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEeeeEecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEe
Confidence 9998 5432 122233 246779999999999 6666655 47899999764
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-10 Score=105.24 Aligned_cols=167 Identities=10% Similarity=-0.065 Sum_probs=108.6
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCC-CCccccccccccccCCCCCCCCCCCcEEEc--CCCCCeEEEEeCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLR-SHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAIDWNPI 240 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~s~~ 240 (358)
+...+..++|+|++..++++...++.|++|++. ... ...+..+. .|...+..++|+|+
T Consensus 143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~-------------------~~~~~~~~~~~~g~~p~~~~~spd 203 (365)
T 1jof_A 143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE-------------------VELVGSVDAPDPGDHPRWVAMHPT 203 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-------------------EEEEEEEECSSTTCCEEEEEECTT
T ss_pred CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC-------------------EEEeeeEecCCCCCCCCEeEECCC
Confidence 567899999999994444444456899999997 310 11122232 24567899999999
Q ss_pred CCCeEEEEeC-CCcEEEEecCC-CCCcc-----c--CCCccccCCC------cEEEEE-ECCCCCCEEEEEEC-CC----
Q 018322 241 TTGRLVTGDC-NSCIYLWEPAS-DATWN-----V--DPNPFIGHSA------SVEDLQ-WSPTEPDVFASCSV-DG---- 299 (358)
Q Consensus 241 ~~~~l~sgs~-dg~I~lwd~~~-~~~~~-----~--~~~~~~~h~~------~V~~v~-~sp~~~~~las~s~-Dg---- 299 (358)
+. +|++++. ++.|.+|++.. .+... . ....+.+|.. .+..++ |+|+++ .|+++.. ..
T Consensus 204 g~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~-~l~v~~~~~~~~~~ 281 (365)
T 1jof_A 204 GN-YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK-YMFASSRANKFELQ 281 (365)
T ss_dssp SS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS-EEEEEEEESSTTSC
T ss_pred CC-EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC-EEEEECCCCCCCCC
Confidence 98 7777664 78999998753 12211 0 0011123333 588999 999998 4444443 33
Q ss_pred -cEEEEECCCCCCeeE---EEecCCCCeEEEEEeC---CCCcEEEEEeC-CCCEEEEeCCC
Q 018322 300 -HIAIWDTRVGKSALT---SFKAHNADVNVISWNR---LASCLLASGSD-DGTFSIHDLRL 352 (358)
Q Consensus 300 -~I~iwD~r~~~~~~~---~~~~h~~~V~~i~~~p---~~~~~lasgs~-Dg~i~iwDlr~ 352 (358)
.|++|++........ .+..+...+..++|+| ++ .+|++++. ++.|.||++..
T Consensus 282 ~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg-~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 282 GYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD-EWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT-TEEEEECSSSCEEEEEEEET
T ss_pred CeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC-CEEEEEEcCCCeEEEEEEch
Confidence 899999963222222 1333555677889999 78 77777775 58999998754
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-11 Score=123.78 Aligned_cols=143 Identities=9% Similarity=0.033 Sum_probs=103.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCC-----eEEEEeCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE-----GYAIDWNPI 240 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~~ 240 (358)
.....++|+|++ .+++++ +|+|++||+.. .+....+.+|... ...++|||+
T Consensus 17 ~~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~Spd 72 (740)
T 4a5s_A 17 LKLYSLRWISDH-EYLYKQ--ENNILVFNAEY---------------------GNSSVFLENSTFDEFGHSINDYSISPD 72 (740)
T ss_dssp CCCCCEEECSSS-EEEEEE--TTEEEEEETTT---------------------CCEEEEECTTTTTTCCSCCCEEEECTT
T ss_pred ccccccEECCCC-cEEEEc--CCcEEEEECCC---------------------CceEEEEechhhhhhcccccceEECCC
Confidence 446689999999 788875 89999999987 3444556666532 234889999
Q ss_pred CCCeEEEEeCC---------CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 241 TTGRLVTGDCN---------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 241 ~~~~l~sgs~d---------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
+. +|+.++.+ +.+.+||+.++ .. ..+..|...+..++|||+|. .||.++ ++.|++||+..+..
T Consensus 73 g~-~l~~~~~~~~~~r~~~~~~~~~~d~~~~-~~----~~l~~~~~~~~~~~~SPdG~-~la~~~-~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 73 GQ-FILLEYNYVKQWRHSYTASYDIYDLNKR-QL----ITEERIPNNTQWVTWSPVGH-KLAYVW-NNDIYVKIEPNLPS 144 (740)
T ss_dssp SS-EEEEEEEEEECSSSCEEEEEEEEETTTT-EE----CCSSCCCTTEEEEEECSSTT-CEEEEE-TTEEEEESSTTSCC
T ss_pred CC-EEEEEECCeeeEEEccceEEEEEECCCC-cE----EEcccCCCcceeeEECCCCC-EEEEEE-CCeEEEEECCCCce
Confidence 98 88888865 56779999874 32 34566778899999999999 677774 68999999987542
Q ss_pred eeEEEecCCCCe-----------------EEEEEeCCCCcEEEEEeC
Q 018322 312 ALTSFKAHNADV-----------------NVISWNRLASCLLASGSD 341 (358)
Q Consensus 312 ~~~~~~~h~~~V-----------------~~i~~~p~~~~~lasgs~ 341 (358)
...+..++...+ ..+.|+|+| ..||.++.
T Consensus 145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~ 190 (740)
T 4a5s_A 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQF 190 (740)
T ss_dssp EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEE
T ss_pred EEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEE
Confidence 222222332222 348999999 77777753
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=8.3e-10 Score=98.30 Aligned_cols=156 Identities=10% Similarity=0.118 Sum_probs=115.7
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc--CCCCCeEEEEeCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~ 241 (358)
+...++.|.+.|++ .++++...++.|++|+... ..+..+. ++...+.+|++++++
T Consensus 119 ~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g----------------------~~~~~~~~~~~~~~p~~i~~~~~g 175 (286)
T 1q7f_A 119 ILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG----------------------NVLHKFGCSKHLEFPNGVVVNDKQ 175 (286)
T ss_dssp TCSCEEEEEECTTS-CEEEEETTTTEEEEECTTS----------------------CEEEEEECTTTCSSEEEEEECSSS
T ss_pred cCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCC----------------------CEEEEeCCCCccCCcEEEEECCCC
Confidence 44678999999998 6888888889999999654 2223332 344578999999998
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccc--cCCCcEEEEEECCCCCCEEEEEECCC-cEEEEECCCCCCeeEEEec
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFI--GHSASVEDLQWSPTEPDVFASCSVDG-HIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~--~h~~~V~~v~~sp~~~~~las~s~Dg-~I~iwD~r~~~~~~~~~~~ 318 (358)
. ++++...++.|++|+... ... ..+. ++...+..|++++++. ++++...++ .|++||... ..+..+..
T Consensus 176 ~-l~v~~~~~~~i~~~~~~g--~~~---~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g--~~~~~~~~ 246 (286)
T 1q7f_A 176 E-IFISDNRAHCVKVFNYEG--QYL---RQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDG--QLISALES 246 (286)
T ss_dssp E-EEEEEGGGTEEEEEETTC--CEE---EEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTS--CEEEEEEE
T ss_pred C-EEEEECCCCEEEEEcCCC--CEE---EEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCC--CEEEEEcc
Confidence 7 777777789999999743 221 1222 2346789999999997 888888776 999999643 45555544
Q ss_pred CCC--CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 319 HNA--DVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 319 h~~--~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+.. .+..++|.|++ .++++ +.+++|++|++...
T Consensus 247 ~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 247 KVKHAQCFDVALMDDG-SVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SSCCSCEEEEEEETTT-EEEEE-ETTTEEEEEECSCC
T ss_pred cCCCCcceeEEECCCC-cEEEE-CCCCeEEEEEcccc
Confidence 433 47899999999 77777 57899999998654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-10 Score=106.37 Aligned_cols=162 Identities=12% Similarity=0.010 Sum_probs=109.0
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE--eCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID--WNPI 240 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~s~~ 240 (358)
.|...+..+.|+|++ ..|+.++.++.|++||+.. ......+..+...+.... ++++
T Consensus 78 ~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~---------------------g~~~~~~~~~~~~~~~~~~~~~~d 135 (388)
T 3pe7_A 78 GRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLAT---------------------LEENVVYQVPAEWVGYGTWVANSD 135 (388)
T ss_dssp SSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTT---------------------CCEEEEEECCTTEEEEEEEEECTT
T ss_pred CCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCC---------------------CcceeeeechhhcccccceeECCC
Confidence 444555577899999 6788888889999999987 344444445554444444 4788
Q ss_pred CCCeEEEE----------------------eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC-CCCCEEEEEEC
Q 018322 241 TTGRLVTG----------------------DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSV 297 (358)
Q Consensus 241 ~~~~l~sg----------------------s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~ 297 (358)
+. +++.. ..+..|++||+.++.. ..+..+...+..++|+| ++. .|+.++.
T Consensus 136 g~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~l~~~~~~~~~~~~sp~dg~-~l~~~~~ 208 (388)
T 3pe7_A 136 CT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-----TVILQENQWLGHPIYRPYDDS-TVAFCHE 208 (388)
T ss_dssp SS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-----EEEEEESSCEEEEEEETTEEE-EEEEEEC
T ss_pred CC-eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce-----EEeecCCccccccEECCCCCC-EEEEEEe
Confidence 86 66532 2457899999977422 34455677899999999 888 7777665
Q ss_pred C------CcEEEEECCCCCCeeEEEecCC--CCeEEEEEeCCCCcEEEEEeCCC----CEEEEeCCCCCC
Q 018322 298 D------GHIAIWDTRVGKSALTSFKAHN--ADVNVISWNRLASCLLASGSDDG----TFSIHDLRLLKV 355 (358)
Q Consensus 298 D------g~I~iwD~r~~~~~~~~~~~h~--~~V~~i~~~p~~~~~lasgs~Dg----~i~iwDlr~~~~ 355 (358)
. ..|.++|+... ....+..+. ..+..++|+|+|..+++++..++ .|++||+.+++.
T Consensus 209 ~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 209 GPHDLVDARMWLINEDGT--NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp SCTTTSSCSEEEEETTSC--CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred cCCCCCcceEEEEeCCCC--ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 3 37888887653 334444444 35788899999944444443322 399999988763
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-10 Score=113.54 Aligned_cols=157 Identities=6% Similarity=-0.034 Sum_probs=105.6
Q ss_pred EEEEc--CCCCc-EEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCC-CCcEEEcC-----CCCCeEEEEeCCC
Q 018322 170 RIRAM--TQNPH-ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ-SPLVKFGG-----HKDEGYAIDWNPI 240 (358)
Q Consensus 170 ~i~~~--p~~~~-~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----h~~~v~~l~~s~~ 240 (358)
..+|+ |++.. ++++...+..|.++++... . .....+.. |...+.+++|+|+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~--------------------g~~~~~~l~~~~~~~~~~~~~~~~~spD 140 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAP--------------------GGAVPRPLTPVSAVGGGLRWADPVLLPE 140 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTST--------------------TCCCCEECSCCCCSTTCEEEEEEEEETT
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCC--------------------CCCCCEeccCCccCCCCccccCcEECCC
Confidence 55565 99955 4444334566777776500 0 11223333 5667889999999
Q ss_pred CCCeEEEEeCC----------CcEEEEecCCC-----CCcccCCCccc-cCCCcEEEEEECCCCCCEEEEEECC------
Q 018322 241 TTGRLVTGDCN----------SCIYLWEPASD-----ATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVD------ 298 (358)
Q Consensus 241 ~~~~l~sgs~d----------g~I~lwd~~~~-----~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~D------ 298 (358)
+. +|++++.+ ..|++|++... +.. ..+. .+...+..++|||+++ .|+.++.+
T Consensus 141 g~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~ 214 (662)
T 3azo_A 141 RG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV----RELSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMPW 214 (662)
T ss_dssp TT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS----EESSCSCSSEECCCEECTTSS-EEEEEEECTTCCTT
T ss_pred CC-EEEEEEecccCCCCCCceeEEEEEECCCCccccCCce----eEEEecCCCcccCceECCCCC-EEEEEECCCCCCCC
Confidence 98 88888766 58999998762 221 2344 4556788899999999 77766644
Q ss_pred --CcEEEEECC-CCC-CeeEEE-ecCCCCeEEEEEeCCCCcEEEEEeCCC--CEEEEeCCCC
Q 018322 299 --GHIAIWDTR-VGK-SALTSF-KAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLL 353 (358)
Q Consensus 299 --g~I~iwD~r-~~~-~~~~~~-~~h~~~V~~i~~~p~~~~~lasgs~Dg--~i~iwDlr~~ 353 (358)
..|++||+. ++. .....+ ..|...+..++|+|++ .++++++.++ .|.+||+.+.
T Consensus 215 ~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~ 275 (662)
T 3azo_A 215 EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATG 275 (662)
T ss_dssp TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTC
T ss_pred CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCC
Confidence 379999998 431 123333 4457789999999999 6888888888 5666666443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.7e-09 Score=95.83 Aligned_cols=160 Identities=14% Similarity=0.119 Sum_probs=116.4
Q ss_pred CCceeEEEEcCCCCcEEEEEeCC------------------------CcEEEEeCCCCccccccccccccCCCCCCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADT------------------------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQS 220 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~d------------------------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (358)
.+.|.+|+++|++ +++++.+.+ ++|.+||... .+
T Consensus 23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---------------------g~ 80 (329)
T 3fvz_A 23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN---------------------AE 80 (329)
T ss_dssp CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT---------------------CC
T ss_pred cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC---------------------Ce
Confidence 4789999999999 788887777 4688888764 23
Q ss_pred CcEEEc-CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcc---------ccCCCcEEEEEECC-CCC
Q 018322 221 PLVKFG-GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF---------IGHSASVEDLQWSP-TEP 289 (358)
Q Consensus 221 ~~~~~~-~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~---------~~h~~~V~~v~~sp-~~~ 289 (358)
.+..+. ++.....+|++++++. ++++...++.|++|+........ ..+ .++......|+++| ++.
T Consensus 81 ~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~---~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ 156 (329)
T 3fvz_A 81 ILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPL---LILGRSMQPGSDQNHFCQPTDVAVEPSTGA 156 (329)
T ss_dssp EEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCS---EEESBTTBCCCSTTCCSSEEEEEECTTTCC
T ss_pred EEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEE---EEecccCCCCCCccccCCCcEEEEeCCCCe
Confidence 333332 3445788999999998 88888889999999985421111 111 23455789999999 666
Q ss_pred CEEEEEE-CCCcEEEEECCCCCCeeEEEecCC----------CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 290 DVFASCS-VDGHIAIWDTRVGKSALTSFKAHN----------ADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 290 ~~las~s-~Dg~I~iwD~r~~~~~~~~~~~h~----------~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
++++.+ .++.|++||.. + ..+..+.... ...+.|+++|++..++++...++.|++||..++
T Consensus 157 -lyv~d~~~~~~I~~~~~~-g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G 228 (329)
T 3fvz_A 157 -VFVSDGYCNSRIVQFSPS-G-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK 228 (329)
T ss_dssp -EEEEECSSCCEEEEECTT-S-CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC
T ss_pred -EEEEeCCCCCeEEEEcCC-C-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC
Confidence 888886 69999999943 2 3455553222 338999999983388888888999999998744
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-10 Score=114.57 Aligned_cols=166 Identities=10% Similarity=0.059 Sum_probs=111.6
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCC----------CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCe
Q 018322 164 HQGCVNRIRAMTQNPHICASWADT----------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEG 232 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~d----------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v 232 (358)
|...+..++|+|++ +.|++++.+ ..|++||+...... .......+. .+...+
T Consensus 128 ~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~l~~~~~~~~ 190 (662)
T 3azo_A 128 GGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA----------------DRSAVRELSDDAHRFV 190 (662)
T ss_dssp TCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT----------------CGGGSEESSCSCSSEE
T ss_pred CCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCccc----------------cCCceeEEEecCCCcc
Confidence 66788999999999 567766665 57999998751000 001223344 455677
Q ss_pred EEEEeCCCCCCeEEEEeCC--------CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC--cEE
Q 018322 233 YAIDWNPITTGRLVTGDCN--------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--HIA 302 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~d--------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--~I~ 302 (358)
.+++|+|++. +|+.++.+ ..|++||+...+..........+|...+..+.|+|++. +++++..++ .|.
T Consensus 191 ~~~~~SpDG~-~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~ 268 (662)
T 3azo_A 191 TGPRLSPDGR-QAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLH 268 (662)
T ss_dssp CCCEECTTSS-EEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEE
T ss_pred cCceECCCCC-EEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEE
Confidence 8899999998 88877644 37999999732311000122334578899999999999 888888888 555
Q ss_pred EEECCCCCCeeEEEecCCCC---------eEEEEEeCCCCcEEEEEeCCCCEEEE--eCCC
Q 018322 303 IWDTRVGKSALTSFKAHNAD---------VNVISWNRLASCLLASGSDDGTFSIH--DLRL 352 (358)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~~---------V~~i~~~p~~~~~lasgs~Dg~i~iw--Dlr~ 352 (358)
+||+..+ . ...+..+... +..++|+|++ .++++++. +.++|| |+..
T Consensus 269 ~~~~~~~-~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d~~~ 325 (662)
T 3azo_A 269 RVDPATG-A-ATQLCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILDPES 325 (662)
T ss_dssp EECTTTC-C-EEESSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEETTT
T ss_pred EEECCCC-c-eeecccccccccCccccccCceEeEeCCC-EEEEEEEc-CccEEEEEECCC
Confidence 6665443 2 2333222221 5678999988 89999998 999999 5543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.17 E-value=7.6e-10 Score=103.18 Aligned_cols=136 Identities=11% Similarity=0.017 Sum_probs=102.8
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
+.+.+ |+.+.| ++ .+|+++ .++.|++||+... ........|...+.++.+.+.
T Consensus 85 ~~lp~-V~~l~f--d~-~~L~v~-~~~~l~v~dv~sl---------------------~~~~~~~~~~~~v~~i~~~~p- 137 (388)
T 1xip_A 85 KEIPD-VIFVCF--HG-DQVLVS-TRNALYSLDLEEL---------------------SEFRTVTSFEKPVFQLKNVNN- 137 (388)
T ss_dssp EECTT-EEEEEE--ET-TEEEEE-ESSEEEEEESSST---------------------TCEEEEEECSSCEEEEEECSS-
T ss_pred eeCCC-eeEEEE--CC-CEEEEE-cCCcEEEEEchhh---------------------hccCccceeecceeeEEecCC-
Confidence 35777 999999 56 678877 8899999999873 222344556667888877653
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe--eEEE---
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA--LTSF--- 316 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~--~~~~--- 316 (358)
.+++++.||.|.+||+.+... . .+...|.+++|||.| ++.|..||+|++|+..... . ...+
T Consensus 138 --~~av~~~dG~L~v~dl~~~~~-~-------~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~~-~~~k~~I~~P 203 (388)
T 1xip_A 138 --TLVILNSVNDLSALDLRTKST-K-------QLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNGE-MEKQFEFSLP 203 (388)
T ss_dssp --EEEEEETTSEEEEEETTTCCE-E-------EEEESEEEEEECSSE---EEEEETTSCEEEEEEETTE-EEEEEEECCC
T ss_pred --CEEEEECCCCEEEEEccCCcc-c-------cccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCcc-ccccceecCC
Confidence 488889999999999976322 1 245689999999999 6779999999999887632 2 3344
Q ss_pred ---e---cCCCCeEEEEEeCCCCcEEEEE
Q 018322 317 ---K---AHNADVNVISWNRLASCLLASG 339 (358)
Q Consensus 317 ---~---~h~~~V~~i~~~p~~~~~lasg 339 (358)
. +|...|.+|.|.+++ .++++-
T Consensus 204 p~~~~~~~~~~~V~sI~wl~~~-~flv~y 231 (388)
T 1xip_A 204 SELEELPVEEYSPLSVTILSPQ-DFLAVF 231 (388)
T ss_dssp HHHHTSCTTTSEEEEEEESSSS-EEEEEE
T ss_pred cccccccCCCeeEEEEEEecCC-eEEEEE
Confidence 2 377889999999988 666653
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.8e-09 Score=106.68 Aligned_cols=224 Identities=12% Similarity=0.007 Sum_probs=139.9
Q ss_pred CceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCC
Q 018322 47 GEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKP 126 (358)
Q Consensus 47 ~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~ 126 (358)
.+++..|+....-- -.|..-++.|.||+ .+|+.+....+.....|+|+++..
T Consensus 109 ~~~~lld~~~l~~~----~~~~~~~~~~SPDg-----------~~la~~~~~~G~~~~~i~v~d~~t------------- 160 (710)
T 2xdw_A 109 EARVFLDPNILSDD----GTVALRGYAFSEDG-----------EYFAYGLSASGSDWVTIKFMKVDG------------- 160 (710)
T ss_dssp CCEEEECGGGGCTT----SCEEEEEEEECTTS-----------SEEEEEEEETTCSCEEEEEEETTT-------------
T ss_pred CcEEEECHHHhccC----CCEEEEEEEECCCC-----------CEEEEEEcCCCCceEEEEEEECCC-------------
Confidence 34556666543221 23444578888986 366666665555556888887720
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCc----------------E
Q 018322 127 SNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGH----------------V 190 (358)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~----------------V 190 (358)
....... ..+ ..+..+.|+|++ ..|+.++.++. |
T Consensus 161 ---------------------------g~~~~~~-~~~-~~~~~~~wspDg-~~l~~~~~~~~~~~~~~~~~~~~~~~~v 210 (710)
T 2xdw_A 161 ---------------------------AKELPDV-LER-VKFSCMAWTHDG-KGMFYNAYPQQDGKSDGTETSTNLHQKL 210 (710)
T ss_dssp ---------------------------TEEEEEE-EEE-ECSCCEEECTTS-SEEEEEECCCCSSCCSSSCCCCCCCCEE
T ss_pred ---------------------------CCCCccc-ccC-cccceEEEEeCC-CEEEEEEECCccccccccccccCCCCEE
Confidence 1111111 122 226789999999 56666666655 9
Q ss_pred EEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC--CCCCeEEEEeCCCCCCeEEEEeC-----CCcEEEEecCC--
Q 018322 191 QVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG--HKDEGYAIDWNPITTGRLVTGDC-----NSCIYLWEPAS-- 261 (358)
Q Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~~l~sgs~-----dg~I~lwd~~~-- 261 (358)
++|++.... ......+.. |...+.++.|+|++. +|+.++. +..|++||+.+
T Consensus 211 ~~~~l~t~~-------------------~~~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 211 YYHVLGTDQ-------------------SEDILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp EEEETTSCG-------------------GGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred EEEECCCCc-------------------ccceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccc
Confidence 999997621 111222332 445678999999998 7776654 56899999865
Q ss_pred ----CCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-C---CcEEEEECCCCCC-eeEEEecCCC--CeEEEEEeC
Q 018322 262 ----DATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-D---GHIAIWDTRVGKS-ALTSFKAHNA--DVNVISWNR 330 (358)
Q Consensus 262 ----~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-D---g~I~iwD~r~~~~-~~~~~~~h~~--~V~~i~~~p 330 (358)
+... ...+..+...+.. .|+|++. .|+..+. + +.|.+||+..+.. ....+..|.. .+..++|++
T Consensus 271 ~~~~~~~~---~~~l~~~~~~~~~-~~s~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 345 (710)
T 2xdw_A 271 NGITGILK---WVKLIDNFEGEYD-YVTNEGT-VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR 345 (710)
T ss_dssp SSSCSSCC---CEEEECSSSSCEE-EEEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET
T ss_pred cccCCccc---eEEeeCCCCcEEE-EEeccCC-EEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc
Confidence 2211 2345556555555 4888888 4544444 3 3699999987531 2345555544 688899997
Q ss_pred CCCcEEEEEeCCC--CEEEEeCCCCC
Q 018322 331 LASCLLASGSDDG--TFSIHDLRLLK 354 (358)
Q Consensus 331 ~~~~~lasgs~Dg--~i~iwDlr~~~ 354 (358)
.+ .+++++..++ .|.+||+.+++
T Consensus 346 ~~-~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 346 SN-FLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp TT-EEEEEEEETTEEEEEEEETTTCC
T ss_pred CC-EEEEEEEECCEEEEEEEECCCCC
Confidence 77 8999998888 46667875543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.2e-10 Score=104.94 Aligned_cols=155 Identities=10% Similarity=0.044 Sum_probs=111.8
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 246 (358)
.++.+++++.. .++++|+.++ +.+|++............ ...+.... .+.. |+.|+| ++. +|+
T Consensus 39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~----------~~~~~~~~-~lp~-V~~l~f--d~~-~L~ 101 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDST----------PLTFKWEK-EIPD-VIFVCF--HGD-QVL 101 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSC----------CCCCSEEE-ECTT-EEEEEE--ETT-EEE
T ss_pred cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccc----------cccceEEe-eCCC-eeEEEE--CCC-EEE
Confidence 69999999988 6888888874 666997653211110000 02333333 3555 999999 666 888
Q ss_pred EEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEE
Q 018322 247 TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326 (358)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i 326 (358)
++ .++.|++||+++... ......|...+.++.+.+. -+|+++.||.|.+||+..+. .. . +...|.|+
T Consensus 102 v~-~~~~l~v~dv~sl~~----~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~-~~-~---~~~~Vs~v 168 (388)
T 1xip_A 102 VS-TRNALYSLDLEELSE----FRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKS-TK-Q---LAQNVTSF 168 (388)
T ss_dssp EE-ESSEEEEEESSSTTC----EEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCC-EE-E---EEESEEEE
T ss_pred EE-cCCcEEEEEchhhhc----cCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCc-cc-c---ccCCceEE
Confidence 88 789999999977432 1345567778888887654 28889999999999998743 32 2 44579999
Q ss_pred EEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 327 SWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 327 ~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+|+|.| ++.|..||++++|+.....
T Consensus 169 ~WSpkG---~~vg~~dg~i~~~~~~~~~ 193 (388)
T 1xip_A 169 DVTNSQ---LAVLLKDRSFQSFAWRNGE 193 (388)
T ss_dssp EECSSE---EEEEETTSCEEEEEEETTE
T ss_pred EEcCCc---eEEEEcCCcEEEEcCCCcc
Confidence 999999 6778899999999876543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.13 E-value=8.5e-09 Score=93.71 Aligned_cols=165 Identities=10% Similarity=0.015 Sum_probs=113.3
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.+..+...+.+++|+|++ .+++++..++.|++||... .........+...+.+++|++
T Consensus 39 ~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~---------------------~~~~~~~~~~~~~~~~i~~~~ 96 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPET---------------------KEIKRPFVSHKANPAAIKIHK 96 (333)
T ss_dssp EEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTT---------------------CCEEEEEECSSSSEEEEEECT
T ss_pred EEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCC---------------------CcEEEEeeCCCCCcceEEECC
Confidence 445677778999999988 6888888899999999875 222222324556899999999
Q ss_pred CCCCeEEEEeCC----CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC------CCcEEEEECCCC
Q 018322 240 ITTGRLVTGDCN----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV------DGHIAIWDTRVG 309 (358)
Q Consensus 240 ~~~~~l~sgs~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~------Dg~I~iwD~r~~ 309 (358)
++. +++++..+ +.|.+||......... .. ...+...+.+++++|++. ++++... .+.|..+|...+
T Consensus 97 dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~-~~-~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~ 172 (333)
T 2dg1_A 97 DGR-LFVCYLGDFKSTGGIFAATENGDNLQDI-IE-DLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR 172 (333)
T ss_dssp TSC-EEEEECTTSSSCCEEEEECTTSCSCEEE-EC-SSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC
T ss_pred CCc-EEEEeCCCCCCCceEEEEeCCCCEEEEE-Ec-cCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCC
Confidence 986 77776655 6899999866322100 00 012446799999999997 7766553 245666665542
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+..+..+...++.++|+|++..++++.+.++.|.+||+++
T Consensus 173 --~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 173 --TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp --CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred --EEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 22333333445889999999933556666788999999864
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-09 Score=100.25 Aligned_cols=164 Identities=10% Similarity=-0.066 Sum_probs=111.8
Q ss_pred EEEecCCCceeE-----EEEcCCCCcEEEEEeC-CCc--EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC
Q 018322 159 LRKVAHQGCVNR-----IRAMTQNPHICASWAD-TGH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD 230 (358)
Q Consensus 159 ~~~~~H~~~V~~-----i~~~p~~~~~lat~s~-dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 230 (358)
.++..|.+.+.. .+|+|++ ..||.++. +|. |.+||+.. ........++..
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~---------------------g~~~~lt~~~~~ 81 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDG-SKLLFGGAFDGPWNYYLLDLNT---------------------QVATQLTEGRGD 81 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTT---------------------CEEEECCCSSCB
T ss_pred EEecCCcccccchhhcCccCCCCC-CEEEEEEcCCCCceEEEEeCCC---------------------CceEEeeeCCCC
Confidence 445566666666 8899999 55666565 774 77778765 233333445555
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEE--ECCCCCCEEEEE-------------
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ--WSPTEPDVFASC------------- 295 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~--~sp~~~~~las~------------- 295 (358)
.+.++.|+|++. +|+.++.++.|++||+.++... ..+..+...+.... ++|++. +++..
T Consensus 82 ~~~~~~~spdg~-~l~~~~~~~~l~~~d~~~g~~~----~~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~ 155 (388)
T 3pe7_A 82 NTFGGFLSPDDD-ALFYVKDGRNLMRVDLATLEEN----VVYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDW 155 (388)
T ss_dssp CSSSCEECTTSS-EEEEEETTTEEEEEETTTCCEE----EEEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSH
T ss_pred CccceEEcCCCC-EEEEEeCCCeEEEEECCCCcce----eeeechhhcccccceeECCCCC-eeccccccCccccccccc
Confidence 556788999998 9999998999999999874321 12333444444444 489988 66532
Q ss_pred ---------ECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeC-CCCcEEEEEeCC------CCEEEEeCCCC
Q 018322 296 ---------SVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR-LASCLLASGSDD------GTFSIHDLRLL 353 (358)
Q Consensus 296 ---------s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p-~~~~~lasgs~D------g~i~iwDlr~~ 353 (358)
..+..|.+||+.++. ...+..+...+..++|+| ++ ..|+.++.. ..|.++|+...
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 156 KKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGT 226 (388)
T ss_dssp HHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred chhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCC
Confidence 234689999998853 445556677899999999 88 777666543 37888887654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.6e-09 Score=95.65 Aligned_cols=159 Identities=12% Similarity=0.040 Sum_probs=115.0
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.+.....++.|+|++..+++++..++.|++|+... . ...+..+...+.+|++++++.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---------------------~--~~~~~~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---------------------Q--LSPEMHPSHHQNGHCLNKQGH 81 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---------------------C--EEEEESSCSSEEEEEECTTCC
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC---------------------C--eEEEECCCCCcceeeECCCCc
Confidence 46677889999999955889999999999999876 2 445556677899999999987
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEEEEC-----------------CCcEEEE
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSV-----------------DGHIAIW 304 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~-----------------Dg~I~iw 304 (358)
++++...++.|.+||..++. .........+ ....+++++++|++. ++++.+. .+.|..+
T Consensus 82 -l~v~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~ 158 (296)
T 3e5z_A 82 -LIACSHGLRRLERQREPGGE-WESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRL 158 (296)
T ss_dssp -EEEEETTTTEEEEECSTTCC-EEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred -EEEEecCCCeEEEEcCCCCc-EEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEE
Confidence 77776667899999986633 2211111111 123577899999998 7777321 2355555
Q ss_pred ECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 305 DTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 305 D~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+.. ..+..+..+....+.++|+|++ .+|++.+.++.|.+||+.
T Consensus 159 ~~~---g~~~~~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 159 APD---GTLSAPIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLN 201 (296)
T ss_dssp CTT---SCEEEEECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEEC
T ss_pred CCC---CCEEEeecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEEC
Confidence 544 2344455666778999999999 666888888999999986
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-09 Score=109.60 Aligned_cols=165 Identities=7% Similarity=-0.044 Sum_probs=107.9
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCC-C----cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADT-G----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~d-g----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
|...+..++|+|++ .+||.++.+ | +|++||+.. ...+.....+ ..+.+++|+
T Consensus 123 ~~~~~~~~~~SPDg-~~la~~~~~~G~~~~~i~v~d~~t---------------------g~~~~~~~~~-~~~~~~~ws 179 (710)
T 2xdw_A 123 GTVALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDG---------------------AKELPDVLER-VKFSCMAWT 179 (710)
T ss_dssp SCEEEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTT---------------------TEEEEEEEEE-ECSCCEEEC
T ss_pred CCEEEEEEEECCCC-CEEEEEEcCCCCceEEEEEEECCC---------------------CCCCcccccC-cccceEEEE
Confidence 44568899999999 566654443 3 899999987 2222211111 125689999
Q ss_pred CCCCCeEEEEeCCCc----------------EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-----
Q 018322 239 PITTGRLVTGDCNSC----------------IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV----- 297 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~----------------I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~----- 297 (358)
|++. .|+.++.++. |++|++.++............|...+..+.|+|+++ .|+.++.
T Consensus 180 pDg~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~ 257 (710)
T 2xdw_A 180 HDGK-GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDP 257 (710)
T ss_dssp TTSS-EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSS
T ss_pred eCCC-EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCC
Confidence 9998 7877777665 999999764321110112223456688999999999 5555543
Q ss_pred CCcEEEEECCC------CCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCC---CCEEEEeCCCCC
Q 018322 298 DGHIAIWDTRV------GKSALTSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLK 354 (358)
Q Consensus 298 Dg~I~iwD~r~------~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~D---g~i~iwDlr~~~ 354 (358)
+..|++||+.. +......+..+...+.. .|++++..+++++..+ +.|.+||+.++.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 56899999976 33245566666666655 5888884555554433 369999998764
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8.2e-08 Score=87.14 Aligned_cols=159 Identities=10% Similarity=0.076 Sum_probs=106.7
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCC----CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc--CCCCCeEEEE
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADT----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAID 236 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~ 236 (358)
.+...+.++.++|++ .++++...+ +.|.+||.... .....+. .+...+.+++
T Consensus 84 ~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~---------------------~~~~~~~~~~~~~~~~~i~ 141 (333)
T 2dg1_A 84 SHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGD---------------------NLQDIIEDLSTAYCIDDMV 141 (333)
T ss_dssp CSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSC---------------------SCEEEECSSSSCCCEEEEE
T ss_pred CCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCC---------------------EEEEEEccCccCCcccceE
Confidence 567889999999998 677776666 68999998762 1111121 2345788999
Q ss_pred eCCCCCCeEEEEeC------CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 237 WNPITTGRLVTGDC------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 237 ~s~~~~~~l~sgs~------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
++|++. ++++... .+.|..|+... +.. ..+..+...+..++|+|++..++++.+.++.|.+||++...
T Consensus 142 ~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~-~~~----~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g 215 (333)
T 2dg1_A 142 FDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF-RTV----TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG 215 (333)
T ss_dssp ECTTSC-EEEEECCCBTTBCCEEEEEECTTS-CCE----EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred ECCCCC-EEEEeccccccCCCceEEEEeCCC-CEE----EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCC
Confidence 999986 6665543 24566666543 221 12223334578999999997455666678999999997422
Q ss_pred CeeEE--------EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 311 SALTS--------FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 311 ~~~~~--------~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
..+.. +..+ ..+..+++.+++ .++++...++.|.+||..
T Consensus 216 ~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 216 VTIQPFGATIPYYFTGH-EGPDSCCIDSDD-NLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp SSEEEEEEEEEEECCSS-SEEEEEEEBTTC-CEEEEEETTTEEEEECTT
T ss_pred cCcccccceEEEecCCC-CCCCceEECCCC-CEEEEEcCCCEEEEECCC
Confidence 22211 1112 367889999999 788877778899999974
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.9e-08 Score=86.73 Aligned_cols=158 Identities=11% Similarity=0.037 Sum_probs=106.7
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc---C-CCCCeEEEE
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG---G-HKDEGYAID 236 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-h~~~v~~l~ 236 (358)
...+.+.+.++.+.|++ .++++...++.|.+||.... ....... + ....+.+++
T Consensus 64 ~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g---------------------~~~~~~~~~~~~~~~~~~~i~ 121 (296)
T 3e5z_A 64 EMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGG---------------------EWESIADSFEGKKLNSPNDVC 121 (296)
T ss_dssp EESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTC---------------------CEEEEECEETTEECCCCCCEE
T ss_pred EECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCC---------------------cEEEEeeccCCCCCCCCCCEE
Confidence 34567889999999998 67777777789999998541 1111111 1 112466899
Q ss_pred eCCCCCCeEEE----Ee-------------CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC
Q 018322 237 WNPITTGRLVT----GD-------------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 237 ~s~~~~~~l~s----gs-------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (358)
++|++. ++++ |. ..+.|..++.. +.. ..+..+....+.++|+|++. ++++.+.++
T Consensus 122 ~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~----~~~~~~~~~~~gi~~s~dg~-~lv~~~~~~ 193 (296)
T 3e5z_A 122 LAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTL----SAPIRDRVKPNGLAFLPSGN-LLVSDTGDN 193 (296)
T ss_dssp ECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCE----EEEECCCSSEEEEEECTTSC-EEEEETTTT
T ss_pred ECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC--CCE----EEeecCCCCCccEEECCCCC-EEEEeCCCC
Confidence 999987 7776 33 12455555543 221 23344566788999999998 567788889
Q ss_pred cEEEEECCCCCCe---eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 300 HIAIWDTRVGKSA---LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 300 ~I~iwD~r~~~~~---~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.|.+||+...... ...+..+...+..|++.++| +++++. ++.|.+||..
T Consensus 194 ~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 194 ATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD 245 (296)
T ss_dssp EEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT
T ss_pred eEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCC
Confidence 9999999732222 12223345567789999999 766666 7889999975
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.5e-10 Score=103.17 Aligned_cols=153 Identities=11% Similarity=0.055 Sum_probs=98.8
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEE---------------
Q 018322 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYA--------------- 234 (358)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~--------------- 234 (358)
.+.|+|++ ..|+..+.++.|++||+... .....+..+......
T Consensus 85 ~~~~spdg-~~l~~~~~~~~l~~~d~~~~---------------------~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 142 (396)
T 3c5m_A 85 GGFISTDE-RAFFYVKNELNLMKVDLETL---------------------EEQVIYTVDEEWKGYGTWVANSDCTKLVGI 142 (396)
T ss_dssp TCEECTTS-SEEEEEETTTEEEEEETTTC---------------------CEEEEEECCTTEEEEEEEEECTTSSEEEEE
T ss_pred cceECCCC-CEEEEEEcCCcEEEEECCCC---------------------CcEEEEecccccCCCCCEEEeccCCccccc
Confidence 47899999 68888888889999998762 222222222221111
Q ss_pred ----EEeCCCCCCeEEEE-----eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECC-CCCCEEEEEECC------
Q 018322 235 ----IDWNPITTGRLVTG-----DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSVD------ 298 (358)
Q Consensus 235 ----l~~s~~~~~~l~sg-----s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~D------ 298 (358)
++|+|++. .++.+ ..+..|++||+.++.. ..+..+...+..+.|+| ++. .|+.++.+
T Consensus 143 ~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~~~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~ 215 (396)
T 3c5m_A 143 EILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETGEL-----EVIHQDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVD 215 (396)
T ss_dssp EEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTCCE-----EEEEEESSCEEEEEEETTEEE-EEEEEECSCSSSCS
T ss_pred cccccccCCCCc-ceeeeeeccCCCcceEEEEECCCCcE-----EeeccCCcccccceECCCCCC-EEEEEecCCCCCCC
Confidence 45788876 55443 4567899999976322 22335667899999999 676 56665543
Q ss_pred CcEEEEECCCCCCeeEEEecC--CCCeEEEEEeCCCCcEEEEEeCC-----CCEEEEeCCCCC
Q 018322 299 GHIAIWDTRVGKSALTSFKAH--NADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLK 354 (358)
Q Consensus 299 g~I~iwD~r~~~~~~~~~~~h--~~~V~~i~~~p~~~~~lasgs~D-----g~i~iwDlr~~~ 354 (358)
..|.+||+..+. ...+..+ ...+..++|+|++ ..|+.++.+ +.|++||+.+++
T Consensus 216 ~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 216 ARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp CCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred ceEEEEECCCCc--eeEeeccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCC
Confidence 368888886532 3333333 2357889999999 555544332 349999998765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-08 Score=91.76 Aligned_cols=67 Identities=9% Similarity=0.152 Sum_probs=54.1
Q ss_pred EEECCCCCCEEEEEEC----------CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 282 LQWSPTEPDVFASCSV----------DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 282 v~~sp~~~~~las~s~----------Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
++|+|++..++++.+. .+.|.+||+.+. +.+.++..+. +..|+|+|++ .+|++++. +.|.+||+.
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~ia~spdg-~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALSMTIDQQR-NLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCEEEEETTT-TEEEEECS-SCEEEEECS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC--eeEEEECCCC-CEEEEeCC-CeEEEEECC
Confidence 6889998756666551 348999999984 5777777776 8999999999 67777776 999999999
Q ss_pred CC
Q 018322 352 LL 353 (358)
Q Consensus 352 ~~ 353 (358)
++
T Consensus 334 t~ 335 (361)
T 2oiz_A 334 QP 335 (361)
T ss_dssp SS
T ss_pred CC
Confidence 87
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-08 Score=90.00 Aligned_cols=155 Identities=12% Similarity=0.080 Sum_probs=111.6
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE------cCCCCCeEEEEe
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF------GGHKDEGYAIDW 237 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~l~~ 237 (358)
|...+.+|.+.+++ .++++.+.++.|++||.... .+..+ .+|...+.++++
T Consensus 28 ~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g~----------------------~~~~~~~~~~~~~~~~~p~~i~~ 84 (286)
T 1q7f_A 28 QFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGR----------------------FKFQFGECGKRDSQLLYPNRVAV 84 (286)
T ss_dssp CBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSC----------------------EEEEECCBSSSTTCBSSEEEEEE
T ss_pred ccCCCceEEECCCC-CEEEEECCCCEEEEECCCCc----------------------EEEEecccCCCcccccCceEEEE
Confidence 44678899999988 68888888999999997641 12222 134457889999
Q ss_pred -CCCCCCeEEEEeC-CCcEEEEecCCCCCcccCCCcc-ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE
Q 018322 238 -NPITTGRLVTGDC-NSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 238 -s~~~~~~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
.+.+. ++++... ++.|.+|+. + +... ..+ ..+...+.+++++|++. ++++...++.|++||... ..+.
T Consensus 85 ~~~~g~-l~v~~~~~~~~i~~~d~-~-g~~~---~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g--~~~~ 155 (286)
T 1q7f_A 85 VRNSGD-IIVTERSPTHQIQIYNQ-Y-GQFV---RKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNG--NVLH 155 (286)
T ss_dssp ETTTTE-EEEEECGGGCEEEEECT-T-SCEE---EEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTS--CEEE
T ss_pred EcCCCe-EEEEcCCCCCEEEEECC-C-CcEE---EEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCC--CEEE
Confidence 45554 5555433 789999994 3 2222 122 12445789999999997 888888889999999653 3444
Q ss_pred EEe--cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 315 SFK--AHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 315 ~~~--~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.+. .+...++.|++++++ .++++...++.|++||..
T Consensus 156 ~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~ 193 (286)
T 1q7f_A 156 KFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYE 193 (286)
T ss_dssp EEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETT
T ss_pred EeCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCC
Confidence 443 345578999999999 788888888999999974
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.8e-09 Score=94.77 Aligned_cols=160 Identities=11% Similarity=0.070 Sum_probs=114.0
Q ss_pred CCCceeEEEEcC-CCCcEEEEEe-CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc----------CCCCC
Q 018322 164 HQGCVNRIRAMT-QNPHICASWA-DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG----------GHKDE 231 (358)
Q Consensus 164 H~~~V~~i~~~p-~~~~~lat~s-~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~h~~~ 231 (358)
+....+.|+++| .+ .++++.+ .++.|++|+... ..+..+. ++...
T Consensus 141 ~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~~~~~g----------------------~~~~~~~~~g~~~~~~~~~~~~ 197 (329)
T 3fvz_A 141 HFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQFSPSG----------------------KFVTQWGEESSGSSPRPGQFSV 197 (329)
T ss_dssp CCSSEEEEEECTTTC-CEEEEECSSCCEEEEECTTS----------------------CEEEEECEECCSSSCCTTEESC
T ss_pred ccCCCcEEEEeCCCC-eEEEEeCCCCCeEEEEcCCC----------------------CEEEEeccCCCCCCCCCcccCC
Confidence 455788999999 56 7888876 689999999543 2222222 12234
Q ss_pred eEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE-------CCCcEEEE
Q 018322 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-------VDGHIAIW 304 (358)
Q Consensus 232 v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-------~Dg~I~iw 304 (358)
..+|+++|++..++++...++.|++|+..+ +..... .....+...+.+++|+| +. ++++.+ .+..|++|
T Consensus 198 p~gia~d~~~g~l~v~d~~~~~I~~~~~~~-G~~~~~-~~~~~~~~~~~~~~~~p-g~-~~~~~g~~~v~~~~~~~v~~~ 273 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADRENGRIQCFKTDT-KEFVRE-IKHASFGRNVFAISYIP-GF-LFAVNGKPYFGDQEPVQGFVM 273 (329)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTT-CCEEEE-ECCTTTTTCEEEEEEET-TE-EEEEECCCCTTCSCCCCEEEE
T ss_pred CcEEEEECCCCEEEEEECCCCEEEEEECCC-CcEEEE-EeccccCCCcceeeecC-CE-EEEeCCCEEeccCCCcEEEEE
Confidence 789999998332777777889999999975 332211 11234567788999999 32 344433 34589999
Q ss_pred ECCCCCCeeEEE---ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 305 DTRVGKSALTSF---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 305 D~r~~~~~~~~~---~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
|+.++ ..+..+ ..+...+..|+++|++ .++++...++.|++|++..
T Consensus 274 ~~~~g-~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 274 NFSSG-EIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ETTTC-CEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEE
T ss_pred EcCCC-eEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCc
Confidence 99885 455555 3567779999999999 9999999999999999864
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.5e-09 Score=105.90 Aligned_cols=162 Identities=9% Similarity=-0.042 Sum_probs=105.5
Q ss_pred cCCCceeEEEEcCCCCcEEE-----EEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc-E-EEcCCCCCeEEE
Q 018322 163 AHQGCVNRIRAMTQNPHICA-----SWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL-V-KFGGHKDEGYAI 235 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~la-----t~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~h~~~v~~l 235 (358)
+|...+..++|+|++ .+|| .|+.+.+|++||+... ..+ . .+... ...++
T Consensus 118 ~~~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl~tg---------------------~~~~~~~~~~~--~~~~~ 173 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDVDSG---------------------EWSKVDVIEGG--KYATP 173 (695)
T ss_dssp SSCEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEETTTC---------------------CBCSSCCBSCC--TTCCC
T ss_pred CCCEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEECCCC---------------------CCcCCcccCcc--cccce
Confidence 456679999999999 5566 3444568999999872 211 0 11111 12579
Q ss_pred EeCCCCCCeEEEEeCCCc-------------EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC---
Q 018322 236 DWNPITTGRLVTGDCNSC-------------IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--- 299 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~-------------I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--- 299 (358)
+|+|++. .|+.++.+.. |++|++.++............|...+..+.|+|+++ .++.++.++
T Consensus 174 ~wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~ 251 (695)
T 2bkl_A 174 KWTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSE 251 (695)
T ss_dssp EECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTE
T ss_pred EEecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCc
Confidence 9999998 8888887766 999999764321111122334556789999999998 444444444
Q ss_pred -cEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEe---CCCCEEEEeCCCCC
Q 018322 300 -HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGS---DDGTFSIHDLRLLK 354 (358)
Q Consensus 300 -~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs---~Dg~i~iwDlr~~~ 354 (358)
.|.+|+...+ ....+..+...+....| +++. +++++. .++.|.+||+.+++
T Consensus 252 ~~l~~~~~~~~--~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 252 NDVYWKRPGEK--DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEEEECTTCS--SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred eEEEEEcCCCC--ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 6666665442 34556566666667777 5673 555554 35789999997764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.96 E-value=8.8e-09 Score=94.03 Aligned_cols=143 Identities=8% Similarity=0.009 Sum_probs=91.0
Q ss_pred eeEEEEcCCCCcEEEEEeC---------------------------CCcEEEEeCCCCccccccccccccCCCCCCCCCC
Q 018322 168 VNRIRAMTQNPHICASWAD---------------------------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQS 220 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~---------------------------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (358)
+..+.|+|++ ..|+.++. ...|++||+.. ..
T Consensus 106 ~~~~~wspdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~---------------------~~ 163 (347)
T 2gop_A 106 IRSLEWNEDS-RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES---------------------EE 163 (347)
T ss_dssp EEEEEECTTS-SEEEEEEECCCC---------CCCC---------CEEEEEEEETTT---------------------TE
T ss_pred ccceeECCCC-CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC---------------------Ce
Confidence 9999999999 45555442 25688888865 22
Q ss_pred CcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCC-------cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEE
Q 018322 221 PLVKFGGHKDEGYAIDWNPITTGRLVTGDCNS-------CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFA 293 (358)
Q Consensus 221 ~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg-------~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~la 293 (358)
.+..+.. . .+..++|+|++ +++++..++ ...||.+. .+.. ..+..+ ..+..+ +|++. .|+
T Consensus 164 ~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d-~~~~----~~l~~~-~~~~~~--spdg~-~l~ 230 (347)
T 2gop_A 164 VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE-DGKE----EKMFEK-VSFYAV--DSDGE-RIL 230 (347)
T ss_dssp EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE-TTEE----EEEEEE-ESEEEE--EECSS-CEE
T ss_pred EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC-CCce----EEeccC-cceeeE--CCCCC-EEE
Confidence 2122333 2 67789999998 677765542 44555554 2332 223334 445444 99998 555
Q ss_pred EEECC--------CcEEEEECCCCCCeeEEEecCCCCeEE-EEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 294 SCSVD--------GHIAIWDTRVGKSALTSFKAHNADVNV-ISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 294 s~s~D--------g~I~iwD~r~~~~~~~~~~~h~~~V~~-i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.++.+ ..|.+|| ++ ........|...+.. +.|+ ++ ++++++.++.++|| +.+
T Consensus 231 ~~~~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 231 LYGKPEKKYMSEHNKLYIYD--GK-EVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp EEECCSSSCCCSSCEEEEEC--SS-CEEESSTTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EES
T ss_pred EEEccccCCccccceEEEEC--CC-ceEeccccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-EcC
Confidence 55543 4688888 32 232222455667886 8999 66 88889999999999 763
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-08 Score=100.22 Aligned_cols=219 Identities=9% Similarity=-0.036 Sum_probs=136.5
Q ss_pred CceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCC
Q 018322 47 GEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKP 126 (358)
Q Consensus 47 ~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~ 126 (358)
.++.-.|+....-=| .|...++.|.||+ .+|+.+....+.+...|+|+++..-
T Consensus 105 ~~~~l~d~~~~a~~~----~~~~~~~~~SPDG-----------~~la~~~~~~G~~~~~i~v~dl~tg------------ 157 (695)
T 2bkl_A 105 QEKVLLDPNGWSKDG----TVSLGTWAVSWDG-----------KKVAFAQKPNAADEAVLHVIDVDSG------------ 157 (695)
T ss_dssp CCEEEECGGGSSSSS----CEEEEEEEECTTS-----------SEEEEEEEETTCSCCEEEEEETTTC------------
T ss_pred CcEEEEchHHhccCC----CEEEEEEEECCCC-----------CEEEEEECCCCCceEEEEEEECCCC------------
Confidence 344555554432222 3666788898996 3666666666666788999987310
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCc--eeEEEEcCCCCcEEEEEeCCCc-------------EE
Q 018322 127 SNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGC--VNRIRAMTQNPHICASWADTGH-------------VQ 191 (358)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~--V~~i~~~p~~~~~lat~s~dg~-------------V~ 191 (358)
+.. . ..+... ...+.|+|++ ..|+.++.+.. |+
T Consensus 158 ---------------------------~~~-~---~~~~~~~~~~~~~wspDg-~~l~~~~~d~~~~~~~~~~~~~~~v~ 205 (695)
T 2bkl_A 158 ---------------------------EWS-K---VDVIEGGKYATPKWTPDS-KGFYYEWLPTDPSIKVDERPGYTTIR 205 (695)
T ss_dssp ---------------------------CBC-S---SCCBSCCTTCCCEECTTS-SEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred ---------------------------CCc-C---CcccCcccccceEEecCC-CEEEEEEecCCCCCccccCCCCCEEE
Confidence 000 0 001111 2678999999 56777777665 99
Q ss_pred EEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCC----cEEEEecCCCCCccc
Q 018322 192 VWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNS----CIYLWEPASDATWNV 267 (358)
Q Consensus 192 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg----~I~lwd~~~~~~~~~ 267 (358)
+|++...... ...+.....|...+.++.|+|++. +|+.++.++ .|++|+... +.
T Consensus 206 ~~~l~t~~~~-----------------~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~-~~--- 263 (695)
T 2bkl_A 206 YHTLGTEPSK-----------------DTVVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGE-KD--- 263 (695)
T ss_dssp EEETTSCGGG-----------------CEEEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTC-SS---
T ss_pred EEECCCCchh-----------------ceEEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCC-Cc---
Confidence 9999762110 012222234556788999999998 777666555 666665533 22
Q ss_pred CCCccccCCCcEEEEEECCCCCCEEEEEE---CCCcEEEEECCCCCC-eeEEEecC--CCCeEEEEEeCCCCcEEEEEeC
Q 018322 268 DPNPFIGHSASVEDLQWSPTEPDVFASCS---VDGHIAIWDTRVGKS-ALTSFKAH--NADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 268 ~~~~~~~h~~~V~~v~~sp~~~~~las~s---~Dg~I~iwD~r~~~~-~~~~~~~h--~~~V~~i~~~p~~~~~lasgs~ 341 (358)
...+..+...+....| +++. ++++.. .++.|.+||+.++.. ....+..| ...|..++|+ ++ .+++++..
T Consensus 264 -~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~ 338 (695)
T 2bkl_A 264 -FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG-HLSLEYLK 338 (695)
T ss_dssp -CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT-EEEEEEEE
T ss_pred -eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC-EEEEEEEE
Confidence 2345556666667667 6666 666655 358999999977531 12344333 4457888998 55 79999999
Q ss_pred CCCEEEEeCC
Q 018322 342 DGTFSIHDLR 351 (358)
Q Consensus 342 Dg~i~iwDlr 351 (358)
|+..+||.+.
T Consensus 339 dg~~~l~~~~ 348 (695)
T 2bkl_A 339 DATSEVRVAT 348 (695)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 9988887554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-07 Score=84.81 Aligned_cols=166 Identities=11% Similarity=-0.028 Sum_probs=116.9
Q ss_pred eEEEEEecCC-CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC-CCCeE
Q 018322 156 ILQLRKVAHQ-GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-KDEGY 233 (358)
Q Consensus 156 ~~~~~~~~H~-~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~ 233 (358)
.+..++..+. ..++.+.+.|++ ++++ +.++.|+.||. . .+.+..+..+ ...+.
T Consensus 26 ~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~---------------------G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 26 EIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-D---------------------GRELWNIAAPAGCEMQ 80 (276)
T ss_dssp EEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-T---------------------SCEEEEEECCTTCEEE
T ss_pred eEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-C---------------------CCEEEEEcCCCCcccc
Confidence 3434444454 478999999999 6777 35678999998 4 3555566554 34788
Q ss_pred EEEeCCCCCCeEEEEeC-CCcEEEEecCCCCCcc--cCC-CccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 234 AIDWNPITTGRLVTGDC-NSCIYLWEPASDATWN--VDP-NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~-dg~I~lwd~~~~~~~~--~~~-~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
++.+.+++. +|++.+. ++.|..++. + ++.. ... .....+......+++.+++. ++++...++.|..||.. +
T Consensus 81 ~~~~~~dG~-~lv~~~~~~~~v~~vd~-~-Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 81 TARILPDGN-ALVAWCGHPSTILEVNM-K-GEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEECTTSC-EEEEEESTTEEEEEECT-T-SCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTT-S
T ss_pred ccEECCCCC-EEEEecCCCCEEEEEeC-C-CCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCC-C
Confidence 999999998 8888776 777777775 3 3321 000 01112223455667889988 89999999999999987 5
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+.+.++..+ ..+..+.+.+++ .++++++.++.|..+|..+++
T Consensus 156 -~~~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 156 -QLLNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp -CEEEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTTCC
T ss_pred -CEEEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCc
Confidence 466777654 345677888988 888888888899999988665
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5.9e-08 Score=85.17 Aligned_cols=159 Identities=7% Similarity=-0.091 Sum_probs=113.6
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
..++.+.+.+++ .++++...++.|.+|+.... ............+.+|++++++. ++
T Consensus 108 ~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~---------------------~~~~~~~~~~~~p~~i~~~~~g~-l~ 164 (270)
T 1rwi_B 108 NYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSK---------------------TQTVLPFTGLNDPDGVAVDNSGN-VY 164 (270)
T ss_dssp SSEEEEEECTTC-CEEEEEGGGTEEEEECTTCC---------------------SCEECCCCSCCSCCCEEECTTCC-EE
T ss_pred CCCcceEECCCC-CEEEEECCCCEEEEEECCCc---------------------eeEeeccccCCCceeEEEeCCCC-EE
Confidence 568899999988 67877777889999975441 11111112233567899999887 77
Q ss_pred EEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEE
Q 018322 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV 325 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~ 325 (358)
++...++.|.+|+........ ....+...+.+|++++++. ++++...++.|.+||..... .......+...+..
T Consensus 165 v~~~~~~~i~~~~~~~~~~~~----~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~-~~~~~~~~~~~p~~ 238 (270)
T 1rwi_B 165 VTDTDNNRVVKLEAESNNQVV----LPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTT-STVLPFTGLNTPLA 238 (270)
T ss_dssp EEEGGGTEEEEECTTTCCEEE----CCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSC-CEECCCCSCSCEEE
T ss_pred EEECCCCEEEEEecCCCceEe----ecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCc-ceeeccCCCCCcee
Confidence 777778899999986532211 1112336788999999986 88888889999999987532 22211233356899
Q ss_pred EEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 326 ISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 326 i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|++.+++ .++++...++.|+++++...+
T Consensus 239 i~~~~~g-~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 239 VAVDSDR-TVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEECTTC-CEEEEEGGGTEEEEECCCGGG
T ss_pred EEECCCC-CEEEEECCCCEEEEEcCCCcc
Confidence 9999999 799998899999999987543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.7e-07 Score=89.56 Aligned_cols=169 Identities=11% Similarity=0.058 Sum_probs=114.6
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC----C
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN----P 239 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s----~ 239 (358)
....+..+.|+|++ +++.+++.++.|.+||+... +.+.+..+... .....++|+ |
T Consensus 195 ~g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~-------------------t~~~v~~i~~G-~~P~~ia~s~~~~p 253 (567)
T 1qks_A 195 TGYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMK-------------------EPTTVAEIKIG-SEARSIETSKMEGW 253 (567)
T ss_dssp CSSCEEEEEECTTS-CEEEEEETTSEEEEEETTSS-------------------SCCEEEEEECC-SEEEEEEECCSTTC
T ss_pred CCCCccceEECCCC-CEEEEEcCCCeEEEEECCCC-------------------CCcEeEEEecC-CCCceeEEccccCC
Confidence 34467799999999 56777789999999999510 13444455432 346789999 6
Q ss_pred CCCCeEEEEe-CCCcEEEEecCCCCCccc-CCCc--cc---cCCC-cEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 240 ITTGRLVTGD-CNSCIYLWEPASDATWNV-DPNP--FI---GHSA-SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 240 ~~~~~l~sgs-~dg~I~lwd~~~~~~~~~-~~~~--~~---~h~~-~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
++. ++++++ .+++|.++|..+...... .... .. .|.. .+..+..++.+..++++....|.|.++|......
T Consensus 254 DGk-~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~ 332 (567)
T 1qks_A 254 EDK-YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN 332 (567)
T ss_dssp TTT-EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred CCC-EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence 998 666554 568999999866332110 0000 11 1222 6788999998886777777889999999987432
Q ss_pred eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 312 ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 312 ~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
....-.........+.|+|++.+++++...++.|.++|+.+++
T Consensus 333 ~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 333 LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred ceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 2222223445677899999994455556577899999998764
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-07 Score=80.81 Aligned_cols=158 Identities=4% Similarity=-0.093 Sum_probs=111.3
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeEEEEeCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPITT 242 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~ 242 (358)
+...+..|.+.+++ .++++.. ++.|.+||.... ....+. .....+.+|++++++.
T Consensus 65 ~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~----------------------~~~~~~~~~~~~p~~i~~~~~g~ 120 (270)
T 1rwi_B 65 GLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSN----------------------NQTVLPFDGLNYPEGLAVDTQGA 120 (270)
T ss_dssp SCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCS----------------------CCEECCCCSCSSEEEEEECTTCC
T ss_pred CcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCc----------------------eEeeeecCCcCCCcceEECCCCC
Confidence 34567889999988 5666655 889999997652 111222 2224688999999887
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
++++...++.|.+|+..+..... ........+.+|++++++. ++++...++.|.+||..... .......+...
T Consensus 121 -l~v~~~~~~~i~~~~~~~~~~~~----~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~ 193 (270)
T 1rwi_B 121 -VYVADRGNNRVVKLAAGSKTQTV----LPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNN-QVVLPFTDITA 193 (270)
T ss_dssp -EEEEEGGGTEEEEECTTCCSCEE----CCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCC-EEECCCSSCCS
T ss_pred -EEEEECCCCEEEEEECCCceeEe----eccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCc-eEeecccCCCC
Confidence 77777778899999764421111 1112234678899999997 88888888999999987632 22222233366
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+..|++.+++ .++++...++.|.+||....
T Consensus 194 p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 194 PWGIAVDEAG-TVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp EEEEEECTTC-CEEEEETTTSCEEEECTTCS
T ss_pred ceEEEECCCC-CEEEEECCCCcEEEEcCCCC
Confidence 8999999999 88888888899999998653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-07 Score=87.75 Aligned_cols=159 Identities=10% Similarity=0.038 Sum_probs=98.1
Q ss_pred cCCCceeEEEEcC-CCCcEEEEEeCC------CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC--CCeE
Q 018322 163 AHQGCVNRIRAMT-QNPHICASWADT------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK--DEGY 233 (358)
Q Consensus 163 ~H~~~V~~i~~~p-~~~~~lat~s~d------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~ 233 (358)
.+...+..+.|+| ++ ..|+..+.+ ..|.+|++.. .. ...+..+. ..+.
T Consensus 185 ~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~---------------------~~-~~~l~~~~~~~~~~ 241 (396)
T 3c5m_A 185 QDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDG---------------------SN-VRKIKEHAEGESCT 241 (396)
T ss_dssp EESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTS---------------------CC-CEESSCCCTTEEEE
T ss_pred cCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCC---------------------Cc-eeEeeccCCCcccc
Confidence 5677899999999 66 445554443 3578888754 11 12222222 2577
Q ss_pred EEEeCCCCCCeEEEEeCC-----CcEEEEecCCCCCcccCCCccccCCCcEEEEEECC-CCCCEEEEEE-----------
Q 018322 234 AIDWNPITTGRLVTGDCN-----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCS----------- 296 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s----------- 296 (358)
.++|+|++. +|+.++.+ +.|++||+.++.. . .+.... ... +.|+| ++. ++++++
T Consensus 242 ~~~~spdg~-~l~~~~~~~~~~~~~l~~~d~~~g~~-~----~l~~~~-~~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 242 HEFWIPDGS-AMAYVSYFKGQTDRVIYKANPETLEN-E----EVMVMP-PCS-HLMSNFDGS-LMVGDGCDAPVDVADAD 312 (396)
T ss_dssp EEEECTTSS-CEEEEEEETTTCCEEEEEECTTTCCE-E----EEEECC-SEE-EEEECSSSS-EEEEEECCC--------
T ss_pred ceEECCCCC-EEEEEecCCCCccceEEEEECCCCCe-E----EeeeCC-CCC-CCccCCCCc-eEEEecCCcceeecccc
Confidence 899999998 66666443 4499999976332 1 111111 123 89999 998 776654
Q ss_pred -----CCCcEEEEECCCCCCeeEEEecCCC-----------CeEEEEEeCCCCcEEEEEe-CCCC--EEEEeCCCCCCC
Q 018322 297 -----VDGHIAIWDTRVGKSALTSFKAHNA-----------DVNVISWNRLASCLLASGS-DDGT--FSIHDLRLLKVR 356 (358)
Q Consensus 297 -----~Dg~I~iwD~r~~~~~~~~~~~h~~-----------~V~~i~~~p~~~~~lasgs-~Dg~--i~iwDlr~~~~~ 356 (358)
.++.|++||+..+. ...+..+.. .+..++|+|++ ..|+.++ .++. |.++|+......
T Consensus 313 ~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKS--AQKLCKHSTSWDVLDGDRQITHPHPSFTPND-DGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp --CCCCCCEEEEEETTTTB--CCEEEECCCCCCCBTTBSSTTCCCCEECTTS-SEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred ccccCCCCcEEEEecccCc--eEEccCCCCccccccccccCCCCCceEccCC-CeEEEEecCCCCceEEEEEEcccccc
Confidence 34789999998743 234544544 25678999999 5555554 4555 444555555543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=9.8e-07 Score=78.13 Aligned_cols=162 Identities=7% Similarity=-0.004 Sum_probs=113.1
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+..+...+.++.+.+++ .+.++...++.|.+||..... ....+..+...+.+|++.
T Consensus 8 ~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~~~~---------------------~~~~~~~~~~~~~~i~~~ 65 (299)
T 2z2n_A 8 LNLTNQDTGPYGITVSDKG-KVWITQHKANMISCINLDGKI---------------------TEYPLPTPDAKVMCLTIS 65 (299)
T ss_dssp EECCSSSCCEEEEEECTTS-CEEEEETTTTEEEEECTTCCE---------------------EEEECSSTTCCEEEEEEC
T ss_pred EcCCCcCCCccceEECCCC-CEEEEecCCCcEEEEcCCCCe---------------------EEecCCcccCceeeEEEC
Confidence 3444556789999999998 577766667899999976311 011112234578899999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
+++. ++++...++.|..|+.. +.... .........+.++++.+++. ++++...++.|.+||. .+.........
T Consensus 66 ~~g~-l~v~~~~~~~i~~~~~~--g~~~~--~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~ 138 (299)
T 2z2n_A 66 SDGE-VWFTENAANKIGRITKK--GIIKE--YTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPN 138 (299)
T ss_dssp TTSC-EEEEETTTTEEEEECTT--SCEEE--EECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSS
T ss_pred CCCC-EEEeCCCCCeEEEECCC--CcEEE--EeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCC
Confidence 9886 77776668899999975 22110 11122445789999999887 8887777889999998 43322222233
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+...++.+++.+++ .++++...++.|.+||.
T Consensus 139 ~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 139 KGSYPSFITLGSDN-ALWFTENQNNAIGRITE 169 (299)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECT
T ss_pred CCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC
Confidence 45678999999999 78887777789999988
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-07 Score=95.97 Aligned_cols=162 Identities=11% Similarity=-0.010 Sum_probs=99.2
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCC-C----cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADT-G----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~d-g----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
|...+..++|+|++ .+||.++.+ | +|++||+.. ...+.. ..+...+.+++|+
T Consensus 161 ~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~t---------------------g~~~~~-~~~~~~~~~~~ws 217 (741)
T 1yr2_A 161 GATALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVGVAD---------------------GKPLAD-ELKWVKFSGLAWL 217 (741)
T ss_dssp --EEEEEEEECTTS-SEEEEEEEETTCSEEEEEEEETTT---------------------CCEEEE-EEEEEESCCCEES
T ss_pred CCEEEEeEEECCCC-CEEEEEEcCCCCceEEEEEEECCC---------------------CCCCCc-cCCCceeccEEEE
Confidence 44578899999999 555554443 3 599999987 222221 1111123578999
Q ss_pred CCCCCeEEEEeCCCc--------------EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-----C
Q 018322 239 PITTGRLVTGDCNSC--------------IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-----G 299 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~--------------I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-----g 299 (358)
|+ . .|+.++.++. |++|++.++............+...+..+.|+|+++ .++..+.+ .
T Consensus 218 pD-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~ 294 (741)
T 1yr2_A 218 GN-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVN 294 (741)
T ss_dssp TT-S-EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCC
T ss_pred CC-C-EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcc
Confidence 99 7 7776666554 889998653321110111222334588999999999 55555543 3
Q ss_pred cEEEEECCCCCCe-eEEEecCCCCeEEEEEeCCCCcEEEEEeC----CCCEEEEeCCCC
Q 018322 300 HIAIWDTRVGKSA-LTSFKAHNADVNVISWNRLASCLLASGSD----DGTFSIHDLRLL 353 (358)
Q Consensus 300 ~I~iwD~r~~~~~-~~~~~~h~~~V~~i~~~p~~~~~lasgs~----Dg~i~iwDlr~~ 353 (358)
.|++||+..+... ...+..+...+.... .|++ ..|+..+. ++.|.+||+.++
T Consensus 295 ~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 295 TVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEEEEEEETTEECCCEEEECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSS
T ss_pred eEEEEECCCCCCcccEEecCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCC
Confidence 8999999874212 455555555555554 4777 45554444 345999998764
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.1e-06 Score=75.97 Aligned_cols=157 Identities=6% Similarity=-0.057 Sum_probs=109.7
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
+...+..+.+.+++ .++++...++.|..|+..... ....+......+.+|++.+++.
T Consensus 55 ~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~---------------------~~~~~~~~~~~~~~i~~~~~g~- 111 (299)
T 2z2n_A 55 PDAKVMCLTISSDG-EVWFTENAANKIGRITKKGII---------------------KEYTLPNPDSAPYGITEGPNGD- 111 (299)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE---------------------EEEECSSTTCCEEEEEECTTSC-
T ss_pred ccCceeeEEECCCC-CEEEeCCCCCeEEEECCCCcE---------------------EEEeCCCcCCCceeeEECCCCC-
Confidence 45788999999988 677776667889999875311 0111122345788999999886
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
++++...++.|.+||. + +.... .....+...+..+++.+++. ++++...++.|..||. ++.........+...+
T Consensus 112 l~v~~~~~~~i~~~d~-~-g~~~~--~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 185 (299)
T 2z2n_A 112 IWFTEMNGNRIGRITD-D-GKIRE--YELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGP 185 (299)
T ss_dssp EEEEETTTTEEEEECT-T-CCEEE--EECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEEecCCceEEEECC-C-CCEEE--ecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcc
Confidence 7777667889999998 4 22211 11222345789999999987 8877777889999998 5331111123345568
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
..+++.+++ .++++...++.|.+||.
T Consensus 186 ~~i~~~~~g-~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 186 VGITKGNDD-ALWFVEIIGNKIGRITT 211 (299)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT
T ss_pred eeEEECCCC-CEEEEccCCceEEEECC
Confidence 899999998 77777767789999998
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.5e-07 Score=91.31 Aligned_cols=218 Identities=11% Similarity=0.026 Sum_probs=127.5
Q ss_pred CceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCC
Q 018322 47 GEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKP 126 (358)
Q Consensus 47 ~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~ 126 (358)
.++...|+....--+ .|..-++.|.||+ .+|+.+....+.+...|+|+++..
T Consensus 147 ~~~~lld~~~l~~~~----~~~~~~~~~SPDG-----------~~la~~~~~~G~e~~~i~v~dl~t------------- 198 (741)
T 1yr2_A 147 KGRVLLDPNTWAKDG----ATALDAWAASDDG-----------RLLAYSVQDGGSDWRTVKFVGVAD------------- 198 (741)
T ss_dssp CCEEEECGGGCC--------EEEEEEEECTTS-----------SEEEEEEEETTCSEEEEEEEETTT-------------
T ss_pred CCEEEECHHHhccCC----CEEEEeEEECCCC-----------CEEEEEEcCCCCceEEEEEEECCC-------------
Confidence 345555664432222 2555678888986 366666655555556788887621
Q ss_pred CCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCC--------------cEEE
Q 018322 127 SNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTG--------------HVQV 192 (358)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg--------------~V~i 192 (358)
...+... .+...+..+.|+|+ ..++.+ +.++ .|++
T Consensus 199 ---------------------------g~~~~~~--~~~~~~~~~~wspD-~~l~~~-~~~~~~~~~~~~~~~~~~~v~~ 247 (741)
T 1yr2_A 199 ---------------------------GKPLADE--LKWVKFSGLAWLGN-DALLYS-RFAEPKEGQAFQALNYNQTVWL 247 (741)
T ss_dssp ---------------------------CCEEEEE--EEEEESCCCEESTT-SEEEEE-ECCCC--------CCCCCEEEE
T ss_pred ---------------------------CCCCCcc--CCCceeccEEEECC-CEEEEE-EecCcccccccccCCCCCEEEE
Confidence 1111111 11222467899998 555544 4443 3888
Q ss_pred EeCCCCccccccccccccCCCCCCCCCCCcEEEcC--CCCCeEEEEeCCCCCCeEEEEeCC-----CcEEEEecCCCC-C
Q 018322 193 WDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG--HKDEGYAIDWNPITTGRLVTGDCN-----SCIYLWEPASDA-T 264 (358)
Q Consensus 193 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~~l~sgs~d-----g~I~lwd~~~~~-~ 264 (358)
|++.... ......+.. +...+.++.|+|++. +|+..+.+ ..|++||+.++. .
T Consensus 248 ~~lgt~~-------------------~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~ 307 (741)
T 1yr2_A 248 HRLGTPQ-------------------SADQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIG 307 (741)
T ss_dssp EETTSCG-------------------GGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEEC
T ss_pred EECCCCc-------------------hhCEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCc
Confidence 9886521 111223332 333588999999998 77766644 389999997641 2
Q ss_pred -cccCCCccccCCCcEEEEEECCCCCCEEEEEECC----CcEEEEECCCCC-CeeEEEecCCCCeEEEEEeCCCCcEEEE
Q 018322 265 -WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD----GHIAIWDTRVGK-SALTSFKAHNADVNVISWNRLASCLLAS 338 (358)
Q Consensus 265 -~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D----g~I~iwD~r~~~-~~~~~~~~h~~~V~~i~~~p~~~~~las 338 (358)
+ ..+..+...+.... +|++. .|+..+.+ +.|.+||+..+. .....+..+...+..++|. .+ .++++
T Consensus 308 ~~----~~l~~~~~~~~~~~-~~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~-~lv~~ 379 (741)
T 1yr2_A 308 PV----TALIPDLKAQWDFV-DGVGD-QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN-RLFAS 379 (741)
T ss_dssp CC----EEEECSSSSCEEEE-EEETT-EEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT-EEEEE
T ss_pred cc----EEecCCCCceEEEE-eccCC-EEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC-EEEEE
Confidence 2 23444444455543 48887 66666653 459999987641 2222233444456678887 44 78899
Q ss_pred EeCCCCEEEEeCC
Q 018322 339 GSDDGTFSIHDLR 351 (358)
Q Consensus 339 gs~Dg~i~iwDlr 351 (358)
...|+..+||.+.
T Consensus 380 ~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 380 YIHDAKSQVLAFD 392 (741)
T ss_dssp EEETTEEEEEEEE
T ss_pred EEECCEEEEEEEe
Confidence 9999987777543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-07 Score=94.07 Aligned_cols=165 Identities=10% Similarity=0.060 Sum_probs=106.0
Q ss_pred CCCceeEEEEcCCCCcEEEEEe----CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE-EEcCCCCCeEEEEeC
Q 018322 164 HQGCVNRIRAMTQNPHICASWA----DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWN 238 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s----~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s 238 (358)
|...+..++|+|++..++.+.+ +..+|++||+.+ +..+. .+.+ ....+++|+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t---------------------g~~~~~~~~~--~k~~~~~Ws 183 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES---------------------KQPLETPLKD--VKFSGISWL 183 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT---------------------CSEEEEEEEE--EESCCCEEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC---------------------CCCCccccCC--ceeccEEEe
Confidence 5567888899999943443333 335799999987 22222 1111 112478899
Q ss_pred CCCCCeEEEEeCCC-------------cEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEEEECC---CcE
Q 018322 239 PITTGRLVTGDCNS-------------CIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVD---GHI 301 (358)
Q Consensus 239 ~~~~~~l~sgs~dg-------------~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~D---g~I 301 (358)
++. .|+.++.+. .|++|++.+.......+..... |...+.++.|+|+++.++++.+.+ ..|
T Consensus 184 -Dg~-~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 261 (693)
T 3iuj_A 184 -GNE-GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL 261 (693)
T ss_dssp -TTT-EEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred -CCC-EEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence 998 677666663 3999998764321111122233 445578899999999666665533 589
Q ss_pred EEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCC---CCEEEEeCCCCC
Q 018322 302 AIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLK 354 (358)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~D---g~i~iwDlr~~~ 354 (358)
+++|+..+......+..+....... |.+++..++++...+ +.|.++|+.++.
T Consensus 262 ~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~ 316 (693)
T 3iuj_A 262 YVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG 316 (693)
T ss_dssp EEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred EEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 9999987544556666666666555 666664677776554 679999998764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-07 Score=85.88 Aligned_cols=145 Identities=10% Similarity=0.091 Sum_probs=89.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCC---Cc--EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADT---GH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~d---g~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
..+..++|+|++ ..||..+.+ +. |.+|++.. .........+ . +.+++|+|+
T Consensus 59 ~~~~~~~~SpDg-~~la~~~~~~~~~~~~l~~~~~~~---------------------g~~~~l~~~~-~-~~~~~wspd 114 (347)
T 2gop_A 59 ENATMPRISPDG-KKIAFMRANEEKKVSEIWVADLET---------------------LSSKKILEAK-N-IRSLEWNED 114 (347)
T ss_dssp ESCEEEEECTTS-SEEEEEEEETTTTEEEEEEEETTT---------------------TEEEEEEEES-E-EEEEEECTT
T ss_pred ccCCCeEECCCC-CEEEEEEeccCCCcceEEEEECCC---------------------CceEEEEcCC-C-ccceeECCC
Confidence 568899999999 556655543 33 77777765 2222222222 3 899999999
Q ss_pred CCCeEEEEeC---------------------------CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEE
Q 018322 241 TTGRLVTGDC---------------------------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFA 293 (358)
Q Consensus 241 ~~~~l~sgs~---------------------------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~la 293 (358)
+. .|+.++. ...|++|++.++ ... ..+.. . .+..++|+|++ +++
T Consensus 115 g~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~-~~~---~~l~~-~-~~~~~~~spdg--~~~ 185 (347)
T 2gop_A 115 SR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE-EVI---EEFEK-P-RFSSGIWHRDK--IVV 185 (347)
T ss_dssp SS-EEEEEEECCCC---------CCCC---------CEEEEEEEETTTT-EEE---EEEEE-E-TTCEEEEETTE--EEE
T ss_pred CC-EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC-eEE---eeecC-C-CcccccCCCCe--EEE
Confidence 98 7777653 257899998763 321 12222 2 68889999998 666
Q ss_pred EEECCC-------cEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCC--------CCEEEEe
Q 018322 294 SCSVDG-------HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDD--------GTFSIHD 349 (358)
Q Consensus 294 s~s~Dg-------~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~D--------g~i~iwD 349 (358)
++..++ ...||.+.+ . ....+..+ ..+..+ +|+| ..|+.++.+ ..|.+||
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~d~-~-~~~~l~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 186 NVPHREIIPQYFKFWDIYIWED-G-KEEKMFEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp EEECCCSSCCSSCCEEEEEEET-T-EEEEEEEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC
T ss_pred EEecccccccccccccEEEeCC-C-ceEEeccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC
Confidence 665542 345554443 2 33444444 445444 9999 666555533 3688887
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-07 Score=82.13 Aligned_cols=142 Identities=8% Similarity=-0.008 Sum_probs=104.8
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC-CCeEEEEeCCCCCCeEEEEeCCCcEEEE
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-DEGYAIDWNPITTGRLVTGDCNSCIYLW 257 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~l~sgs~dg~I~lw 257 (358)
++|++++.++.|++||..+ .+.+..+..+. ..+.++.++|++. +|+ +.++.|..|
T Consensus 6 ~~lv~~~~~~~v~~~d~~t---------------------G~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~ 61 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDT---------------------KEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMI 61 (276)
T ss_dssp EEEEECTTCSEEEEEETTT---------------------TEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEE
T ss_pred cEEEeeCCCCEEEEEECCC---------------------CeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEE
Confidence 5899999999999999865 46667777665 4788999999997 777 347789999
Q ss_pred ecCCCCCcccCCCccccC-CCcEEEEEECCCCCCEEEEEEC-CCcEEEEECCCCCCeeEEEec------CCCCeEEEEEe
Q 018322 258 EPASDATWNVDPNPFIGH-SASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSALTSFKA------HNADVNVISWN 329 (358)
Q Consensus 258 d~~~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~~~~~~------h~~~V~~i~~~ 329 (358)
|. + ++.. ..+..+ ...+.++++.|++. ++++.+. .+.|..+|. .+ +.+..+.. +......+++.
T Consensus 62 d~-~-G~~~---W~~~~~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~-~G-k~l~~~~~~~~~~~~~~~~~~v~~~ 133 (276)
T 3no2_A 62 TR-D-GREL---WNIAAPAGCEMQTARILPDGN-ALVAWCGHPSTILEVNM-KG-EVLSKTEFETGIERPHAQFRQINKN 133 (276)
T ss_dssp CT-T-SCEE---EEEECCTTCEEEEEEECTTSC-EEEEEESTTEEEEEECT-TS-CEEEEEEECCSCSSGGGSCSCCEEC
T ss_pred CC-C-CCEE---EEEcCCCCccccccEECCCCC-EEEEecCCCCEEEEEeC-CC-CEEEEEeccCCCCcccccccCceEC
Confidence 98 4 3322 334333 35688999999998 7777776 777887775 33 44544431 11235566789
Q ss_pred CCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 330 RLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 330 p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+++ .+|++...++.|.+||.. ++
T Consensus 134 ~~G-~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 134 KKG-NYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp TTS-CEEEEETTTTEEEEECTT-SC
T ss_pred CCC-CEEEEecCCCEEEEECCC-CC
Confidence 999 899999999999999986 54
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=5.6e-06 Score=81.17 Aligned_cols=225 Identities=11% Similarity=0.062 Sum_probs=143.6
Q ss_pred CCCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCC
Q 018322 45 EEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPN 124 (358)
Q Consensus 45 ~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~ 124 (358)
..+....+|......+.++.+.+-.-.+.+-||+ .|+.++. .++.|.++++..
T Consensus 175 ~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDG-----------r~lyv~~-----~dg~V~viD~~~----------- 227 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASG-----------RYLFVIG-----RDGKVNMIDLWM----------- 227 (567)
T ss_dssp TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTS-----------CEEEEEE-----TTSEEEEEETTS-----------
T ss_pred CCCeEEEEECCCCeEEEEEeCCCCccceEECCCC-----------CEEEEEc-----CCCeEEEEECCC-----------
Confidence 4566777887777777777777655567777775 2444444 346888887620
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEc----CCCCcEEEEEeCCCcEEEEeCCCCcc
Q 018322 125 KPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAM----TQNPHICASWADTGHVQVWDLRSHLN 200 (358)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~----p~~~~~lat~s~dg~V~iwd~~~~~~ 200 (358)
.......+ +........+.|+ |++..++++....++|.|+|..+
T Consensus 228 ----------------------------~t~~~v~~-i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t--- 275 (567)
T 1qks_A 228 ----------------------------KEPTTVAE-IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET--- 275 (567)
T ss_dssp ----------------------------SSCCEEEE-EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT---
T ss_pred ----------------------------CCCcEeEE-EecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC---
Confidence 01112122 2223456789999 68866666666779999999766
Q ss_pred ccccccccccCCCCCCCCCCCcEEEcC----------CCC-CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCC
Q 018322 201 ALAESETIVGQGAPQVSNQSPLVKFGG----------HKD-EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDP 269 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~~-~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~ 269 (358)
.+++..+.. |.. .+.++..++.+..++++....|.|.++|........ .
T Consensus 276 ------------------~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v 335 (567)
T 1qks_A 276 ------------------LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--T 335 (567)
T ss_dssp ------------------CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--E
T ss_pred ------------------CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--e
Confidence 333333321 212 577888888877456666778999999986532111 1
Q ss_pred CccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec-----CCC-CeEEEEEeCCCCcEEEEEe-CC
Q 018322 270 NPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA-----HNA-DVNVISWNRLASCLLASGS-DD 342 (358)
Q Consensus 270 ~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~-----h~~-~V~~i~~~p~~~~~lasgs-~D 342 (358)
.. ........++.|+|+++++++++..++.|.++|+.++ +.+..+.. |.. .++ + ++|++..+++++. .+
T Consensus 336 ~~-i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~~g~ 411 (567)
T 1qks_A 336 TE-ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSHMGD 411 (567)
T ss_dssp EE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEE-E-EETTTEEEEEEEBSSS
T ss_pred ee-eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCcccee-e-ECCCCCcEEEeCCCCC
Confidence 11 1233457789999999966677778899999999985 34444432 432 233 2 5887536666664 46
Q ss_pred CCEEEEeCCC
Q 018322 343 GTFSIHDLRL 352 (358)
Q Consensus 343 g~i~iwDlr~ 352 (358)
+.|.++|...
T Consensus 412 ~~Vsvid~~~ 421 (567)
T 1qks_A 412 DSVALIGTDP 421 (567)
T ss_dssp SEEEEEECCT
T ss_pred CeEEEecCCC
Confidence 8999999987
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-06 Score=78.60 Aligned_cols=162 Identities=6% Similarity=0.052 Sum_probs=108.0
Q ss_pred CceeEEEEcCCCCcEEEEEeCC---------------CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADT---------------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD 230 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~d---------------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 230 (358)
..++.+.+.+++ .+.++...+ +.|..|+... .. ..+..+..
T Consensus 117 ~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g----------------------~~-~~~~~~~~ 172 (314)
T 1pjx_A 117 QGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG----------------------QM-IQVDTAFQ 172 (314)
T ss_dssp BCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS----------------------CE-EEEEEEES
T ss_pred cCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCCC----------------------CE-EEeccCCC
Confidence 358899999988 566665544 4566665432 11 11222233
Q ss_pred CeEEEEeC----CCCCCeEEEEeCCCcEEEEecCCCCCccc--CCCccccCC-CcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 231 EGYAIDWN----PITTGRLVTGDCNSCIYLWEPASDATWNV--DPNPFIGHS-ASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 231 ~v~~l~~s----~~~~~~l~sgs~dg~I~lwd~~~~~~~~~--~~~~~~~h~-~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
...+++|+ +++..++++...++.|.+|++...+.... ....+..+. ..+..+++++++. ++++...++.|.+
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEV 251 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEE
Confidence 56789999 98862344545678999999862222100 011223333 5678899999997 8888888999999
Q ss_pred EECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 304 WDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
||..++ ..+..+..+...+.+++|++++..++++...++.|..|++...
T Consensus 252 ~d~~~g-~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 252 FGPDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ECTTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EcCCCC-cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 998854 3455566666789999999999336666667789999998753
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.9e-06 Score=76.49 Aligned_cols=156 Identities=10% Similarity=-0.040 Sum_probs=101.6
Q ss_pred EEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE----cCCCCCeEEEEeCCCCCCe
Q 018322 171 IRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF----GGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 171 i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~s~~~~~~ 244 (358)
+.|++++ ..|+++..++ .|.+|+.... .....+ ........+++++|.+. .
T Consensus 176 ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~---------------------~~~~~~g~~~~~~~~~p~~iav~p~~g-~ 232 (409)
T 3hrp_A 176 PAVTKDK-QRVYSIGWEGTHTVYVYMKASG---------------------WAPTRIGQLGSTFSGKIGAVALDETEE-W 232 (409)
T ss_dssp CEECTTS-SEEEEEBSSTTCEEEEEEGGGT---------------------TCEEEEEECCTTSCSCCCBCEECTTSS-E
T ss_pred eeEecCC-CcEEEEecCCCceEEEEEcCCC---------------------ceeEEeeeccchhcCCcEEEEEeCCCC-e
Confidence 8999998 5666666655 6888876541 111122 11345677899999554 6
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCc--EEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC--
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSAS--VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN-- 320 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~--V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~-- 320 (358)
|+.+..++.|+.||...............++... ...++|+|++..++++-...+.|+.|+.... +..+.++.
T Consensus 233 lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~ 309 (409)
T 3hrp_A 233 LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQ 309 (409)
T ss_dssp EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTC
T ss_pred EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCC
Confidence 6667778999999987633211100001122222 2389999965548888888899999987642 33333332
Q ss_pred -------------CCeEEEEEeCCCCcEEEEEe-CCCCEEEEeCCCC
Q 018322 321 -------------ADVNVISWNRLASCLLASGS-DDGTFSIHDLRLL 353 (358)
Q Consensus 321 -------------~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDlr~~ 353 (358)
...+.|+|.+++ .++++-+ .++.|+.||+.++
T Consensus 310 ~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 310 KTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp CSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTT
T ss_pred CCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCC
Confidence 347899999999 7888877 8899999996544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.5e-06 Score=75.94 Aligned_cols=157 Identities=6% Similarity=-0.090 Sum_probs=104.1
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC-----CCeEEEEe
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK-----DEGYAIDW 237 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~ 237 (358)
........+.+++++ .++++...++.|.+||.... +....+.... .....|++
T Consensus 81 ~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~---------------------~~~~~i~~g~~~~~~~~p~~i~~ 138 (328)
T 3dsm_A 81 TGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTY---------------------EITGYIECPDMDMESGSTEQMVQ 138 (328)
T ss_dssp ECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTT---------------------EEEEEEECTTCCTTTCBCCCEEE
T ss_pred CCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCC---------------------eEEEEEEcCCccccCCCcceEEE
Confidence 345778899998888 67777658899999998762 2222222111 14456677
Q ss_pred CCCCCCeEEEEe--CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC----------CcEEEEE
Q 018322 238 NPITTGRLVTGD--CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD----------GHIAIWD 305 (358)
Q Consensus 238 s~~~~~~l~sgs--~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D----------g~I~iwD 305 (358)
.+. .|++++ .++.|.+||+.+... . ..+.. ......+.++|++. +++++..+ +.|.++|
T Consensus 139 --~~~-~lyv~~~~~~~~v~viD~~t~~~-~---~~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id 209 (328)
T 3dsm_A 139 --YGK-YVYVNCWSYQNRILKIDTETDKV-V---DELTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRID 209 (328)
T ss_dssp --ETT-EEEEEECTTCCEEEEEETTTTEE-E---EEEEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred --ECC-EEEEEcCCCCCEEEEEECCCCeE-E---EEEEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEE
Confidence 333 555554 488999999977422 2 12221 23456789999998 77776654 7899999
Q ss_pred CCCCCCeeEEEecC-CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 306 TRVGKSALTSFKAH-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 306 ~r~~~~~~~~~~~h-~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+. .....+... ....+.++|+|++ ..|+.+.. .|.+||+.+.+
T Consensus 210 ~~t~-~v~~~~~~~~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~ 255 (328)
T 3dsm_A 210 AETF-TVEKQFKFKLGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADR 255 (328)
T ss_dssp TTTT-EEEEEEECCTTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSS
T ss_pred CCCC-eEEEEEecCCCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCc
Confidence 9874 344444322 3468999999998 56655543 89999998765
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-05 Score=71.45 Aligned_cols=158 Identities=6% Similarity=-0.014 Sum_probs=110.1
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.....+.+|.+.+++ .+.++...++.|.+||..... . ...+..+...+.+|++.+++.
T Consensus 17 ~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~--------------------~-~~~~~~~~~~~~~i~~~~~g~ 74 (300)
T 2qc5_A 17 IPDSGPYGITSSEDG-KVWFTQHKANKISSLDQSGRI--------------------K-EFEVPTPDAKVMCLIVSSLGD 74 (300)
T ss_dssp STTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE--------------------E-EEECSSTTCCEEEEEECTTSC
T ss_pred CCCCCcceeeECCCC-CEEEEcCCCCeEEEECCCCce--------------------E-EEECCCCCCcceeEEECCCCC
Confidence 345688999999998 677776678899999976311 0 011223335788999998886
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
++++...++.|..||.. +.... .........+.++++.+++. ++++...++.|..||.. +......+......
T Consensus 75 -l~v~~~~~~~v~~~d~~--g~~~~--~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~ 147 (300)
T 2qc5_A 75 -IWFTENGANKIGKLSKK--GGFTE--YPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSY 147 (300)
T ss_dssp -EEEEETTTTEEEEECTT--SCEEE--EECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCC
T ss_pred -EEEEecCCCeEEEECCC--CCeEE--ecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCC
Confidence 66666667889999976 22211 11222346789999999887 88777778899999987 33221222334567
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
++.+++.+++ .++++...++.|.+||.
T Consensus 148 ~~~i~~d~~g-~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 148 PAFITLGSDN-ALWFTENQNNSIGRITN 174 (300)
T ss_dssp EEEEEECTTS-SEEEEETTTTEEEEECT
T ss_pred ceeEEECCCC-CEEEEecCCCeEEEECC
Confidence 8999999999 77777766788999987
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-06 Score=80.73 Aligned_cols=161 Identities=11% Similarity=0.016 Sum_probs=102.7
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEe----------CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC--
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWA----------DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-- 227 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s----------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 227 (358)
....+.++ .+.|+|++. ++.+++ .++.|.+||... .+.+..+..
T Consensus 46 ~i~~g~~p--~i~~spdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t---------------------~~~~~~i~~~~ 101 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGK-KIYTMTTYHERITRGKRSDVVEVWDADK---------------------LTFEKEISLPP 101 (361)
T ss_dssp EEECCEEE--EEEECTTSS-EEEEEEEEETTSSSSCEEEEEEEEETTT---------------------CCEEEEEEECT
T ss_pred EecCCCCC--ceEECCCCC-EEEEEEecccccccCCCCCEEEEEECcC---------------------CcEEEEEEcCc
Confidence 33344444 899999994 555544 367899999875 334444332
Q ss_pred ----CCCCeEEEEeCCCCCCeEEEEeC--CCcEEEEecCCCCCcccCCCc-cccCCCcEEEEEECCCCCCEEEEEECCCc
Q 018322 228 ----HKDEGYAIDWNPITTGRLVTGDC--NSCIYLWEPASDATWNVDPNP-FIGHSASVEDLQWSPTEPDVFASCSVDGH 300 (358)
Q Consensus 228 ----h~~~v~~l~~s~~~~~~l~sgs~--dg~I~lwd~~~~~~~~~~~~~-~~~h~~~V~~v~~sp~~~~~las~s~Dg~ 300 (358)
+......++++|++. +|+++.. ++.|.+||+.+. +.. .. +. + .....+.+.|.+...+++.+.||.
T Consensus 102 ~~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~-~~~---~~~i~-~-~~~~~v~~~p~~~~~~~~~~~dg~ 174 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKG-DYV---EDVTA-A-AGCWSVIPQPNRPRSFMTICGDGG 174 (361)
T ss_dssp TBCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTT-EEE---EEEGG-G-TTEEEEEECTTSSSEEEEEETTSS
T ss_pred cccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCC-cEE---EEEec-C-CCcceeEEcCCCCeeEEEECCCCc
Confidence 224567899999998 8887763 589999999874 222 22 21 1 122336678887668999999999
Q ss_pred EEEEECCCCCCeeEE------EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 301 IAIWDTRVGKSALTS------FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 301 I~iwD~r~~~~~~~~------~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+.+|++......... +..+..++ .+.+.+++ ..++..+.++.|.++|+...
T Consensus 175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~ 231 (361)
T 2oiz_A 175 LLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGD 231 (361)
T ss_dssp EEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSS
T ss_pred EEEEEECCCCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCC
Confidence 999998753333211 11222222 23345666 55666678899999998643
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.8e-06 Score=85.51 Aligned_cols=224 Identities=12% Similarity=0.051 Sum_probs=135.5
Q ss_pred CCCCceeeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCC
Q 018322 44 LEEGEELQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVP 123 (358)
Q Consensus 44 ~~~~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~ 123 (358)
+..++++-+|+.+..-=+.+ .--++.|-||+ .+|+.+....+.+...|+|+++..
T Consensus 110 ~~~~~~vllD~n~la~~~~~----~l~~~~~SpDg-----------~~lAy~~~~~G~~~~~i~v~dl~t---------- 164 (693)
T 3iuj_A 110 EGKPAEVFLDPNTLSPDGTT----ALDQLSFSRDG-----------RILAYSLSLAGSDWREIHLMDVES---------- 164 (693)
T ss_dssp TTSCCEEEECGGGGSTTSCC----EEEEEEECTTS-----------SEEEEEEECSSCCEEEEEEEETTT----------
T ss_pred CCCCcEEEEehhhccCCCcE----EEEEEEECCCC-----------CEEEEEEecCCCceEEEEEEECCC----------
Confidence 45567888888776444433 22356788886 477777776666667888887731
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCC-------------cE
Q 018322 124 NKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTG-------------HV 190 (358)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg-------------~V 190 (358)
...+...... .....+.|+ ++ ..|+.++.+. .|
T Consensus 165 ------------------------------g~~~~~~~~~--~k~~~~~Ws-Dg-~~l~y~~~~~~~~~~~~~~~~~~~v 210 (693)
T 3iuj_A 165 ------------------------------KQPLETPLKD--VKFSGISWL-GN-EGFFYSSYDKPDGSELSARTDQHKV 210 (693)
T ss_dssp ------------------------------CSEEEEEEEE--EESCCCEEE-TT-TEEEEEESSCCC-------CCCCEE
T ss_pred ------------------------------CCCCccccCC--ceeccEEEe-CC-CEEEEEEecCcccccccccCCCcEE
Confidence 1112111111 113567899 88 4555555553 39
Q ss_pred EEEeCCCCccccccccccccCCCCCCCCCCCcEEEc--C-CCCCeEEEEeCCCCCCeEE-EEeC---CCcEEEEecCCCC
Q 018322 191 QVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--G-HKDEGYAIDWNPITTGRLV-TGDC---NSCIYLWEPASDA 263 (358)
Q Consensus 191 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~v~~l~~s~~~~~~l~-sgs~---dg~I~lwd~~~~~ 263 (358)
++|++.... ......+. . |.....++.|+|++. +|+ +.+. ...|++||+.++.
T Consensus 211 ~~~~lgt~~-------------------~~~~~v~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 211 YFHRLGTAQ-------------------EDDRLVFGAIPAQHHRYVGATVTEDDR-FLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp EEEETTSCG-------------------GGCEEEESCSGGGCCSEEEEEECTTSC-EEEEEEESSSSCCEEEEEETTSTT
T ss_pred EEEECCCCc-------------------ccceEEEecCCCCCeEEEEEEEcCCCC-EEEEEEccCCCCcEEEEEECCCCC
Confidence 999987621 11222332 2 344577899999998 554 4332 3589999987643
Q ss_pred CcccCCCccccCCCcEEEEEECCCCCCEEEEEECC---CcEEEEECCCCCC-eeEEEecCCCCeEEEEEeCCCCcEEEEE
Q 018322 264 TWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD---GHIAIWDTRVGKS-ALTSFKAHNADVNVISWNRLASCLLASG 339 (358)
Q Consensus 264 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D---g~I~iwD~r~~~~-~~~~~~~h~~~V~~i~~~p~~~~~lasg 339 (358)
.. ...+..+....... |++++..+++....+ +.|.++|+..+.. ....+..|...+. .|++++..++++.
T Consensus 271 ~~---~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~ 344 (693)
T 3iuj_A 271 AP---LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEY 344 (693)
T ss_dssp CC---CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEE
T ss_pred Cc---eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEE
Confidence 21 13445555555554 666666455555544 6799999987532 1345666766665 8888885555555
Q ss_pred eCCC--CEEEEeCCC
Q 018322 340 SDDG--TFSIHDLRL 352 (358)
Q Consensus 340 s~Dg--~i~iwDlr~ 352 (358)
..++ .|++||+..
T Consensus 345 ~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 345 MVDATARVEQFDYEG 359 (693)
T ss_dssp EETTEEEEEEECTTS
T ss_pred EECCeeEEEEEECCC
Confidence 5665 688998864
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.53 E-value=1e-05 Score=72.35 Aligned_cols=160 Identities=9% Similarity=-0.000 Sum_probs=103.3
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.+..--.+..|+|.+..++++....+.|+.||.... . ...+ .....+.++++++++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~---------------------~-~~~~-~~~~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK---------------------Q-VQRV-TMDAPVSSVALRQSGG 66 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTC---------------------C-EEEE-ECSSCEEEEEEBTTSS
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCC---------------------c-EEEE-eCCCceEEEEECCCCC
Confidence 344556688999976678888888999999998761 1 1222 2345789999999986
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEEEECC---------CcEEEEECCCCCCe
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVD---------GHIAIWDTRVGKSA 312 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~D---------g~I~iwD~r~~~~~ 312 (358)
++++ . ++.|.+||..++ ........... ....+++++++|++. ++++.... ....||.+.... .
T Consensus 67 -l~v~-~-~~~l~~~d~~~g-~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~ 140 (297)
T 3g4e_A 67 -YVAT-I-GTKFCALNWKEQ-SAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH-H 140 (297)
T ss_dssp -EEEE-E-TTEEEEEETTTT-EEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS-C
T ss_pred -EEEE-E-CCeEEEEECCCC-cEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC-C
Confidence 5554 4 568999998653 22110011111 234589999999998 66654321 234555554322 2
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+..+..+....+.++|+|++..++++.+.++.|.+||+.
T Consensus 141 ~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d 179 (297)
T 3g4e_A 141 VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYD 179 (297)
T ss_dssp EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence 233333445678999999994566777778899999873
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.2e-06 Score=75.42 Aligned_cols=153 Identities=10% Similarity=-0.027 Sum_probs=98.4
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 246 (358)
-.....|+|++..++.+....+.|.+||.... . ...+. ....+.++.|++++. +++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---------------------~-~~~~~-~~~~v~~i~~~~dg~-l~v 105 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG---------------------R-KTVHA-LPFMGSALAKISDSK-QLI 105 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT---------------------E-EEEEE-CSSCEEEEEEEETTE-EEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC---------------------c-EEEEE-CCCcceEEEEeCCCe-EEE
Confidence 34678899986678888888899999998751 1 12222 235789999999875 555
Q ss_pred EEeCCCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEEEEC------CCcEEEEECCCCCCeeEEEecC
Q 018322 247 TGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSV------DGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~------Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
+ +.+ .|.+||..++. .......... ....++++.++|++. ++++... .+.|..++ . . .+..+..+
T Consensus 106 ~-~~~-gl~~~d~~~g~-~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~-g-~~~~~~~~ 177 (326)
T 2ghs_A 106 A-SDD-GLFLRDTATGV-LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--K-G-KVTKLFAD 177 (326)
T ss_dssp E-ETT-EEEEEETTTCC-EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--T-T-EEEEEEEE
T ss_pred E-ECC-CEEEEECCCCc-EEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--C-C-cEEEeeCC
Confidence 4 444 49999986632 2110010011 124689999999998 6655432 24555555 3 2 23333334
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
....+.++|+|++..++++.+.++.|.+||+.
T Consensus 178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp ESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 44678999999994455666667899999985
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.53 E-value=9e-06 Score=73.92 Aligned_cols=153 Identities=7% Similarity=-0.008 Sum_probs=99.2
Q ss_pred ceeEEEEcCCCCcEEEEEe-CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 167 CVNRIRAMTQNPHICASWA-DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s-~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
....+.+ ..+ .++++.. .++.|.+||+.. .+.+..+... .....+.+++++. ++
T Consensus 132 ~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t---------------------~~~~~~i~~g-~~p~~i~~~~dG~-l~ 186 (328)
T 3dsm_A 132 STEQMVQ-YGK-YVYVNCWSYQNRILKIDTET---------------------DKVVDELTIG-IQPTSLVMDKYNK-MW 186 (328)
T ss_dssp BCCCEEE-ETT-EEEEEECTTCCEEEEEETTT---------------------TEEEEEEECS-SCBCCCEECTTSE-EE
T ss_pred CcceEEE-ECC-EEEEEcCCCCCEEEEEECCC---------------------CeEEEEEEcC-CCccceEEcCCCC-EE
Confidence 4556666 333 5666554 488999999986 2233333322 2346788999886 66
Q ss_pred EEEeCC----------CcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE
Q 018322 246 VTGDCN----------SCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 246 ~sgs~d----------g~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
+++..+ +.|.++|..+. ... ..+.. .......++|+|++. .+..+.. .|.+||+.++.....
T Consensus 187 v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~---~~~~~~~g~~p~~la~~~d~~-~lyv~~~--~v~~~d~~t~~~~~~ 259 (328)
T 3dsm_A 187 TITDGGYEGSPYGYEAPSLYRIDAETF-TVE---KQFKFKLGDWPSEVQLNGTRD-TLYWINN--DIWRMPVEADRVPVR 259 (328)
T ss_dssp EEBCCBCTTCSSCBCCCEEEEEETTTT-EEE---EEEECCTTCCCEEEEECTTSC-EEEEESS--SEEEEETTCSSCCSS
T ss_pred EEECCCccCCccccCCceEEEEECCCC-eEE---EEEecCCCCCceeEEEecCCC-EEEEEcc--EEEEEECCCCceeee
Confidence 666544 78999998763 221 12211 123688999999988 4444433 899999987432111
Q ss_pred E-EecCCCCeEEEEEeCCCCcEEEEE----eCCCCEEEEeCC
Q 018322 315 S-FKAHNADVNVISWNRLASCLLASG----SDDGTFSIHDLR 351 (358)
Q Consensus 315 ~-~~~h~~~V~~i~~~p~~~~~lasg----s~Dg~i~iwDlr 351 (358)
. +..+......|+++|++..++++. ..++.|.+||..
T Consensus 260 ~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 260 PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 1 122245689999999554888887 678999999987
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.3e-06 Score=75.07 Aligned_cols=160 Identities=8% Similarity=-0.067 Sum_probs=106.5
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
..+........|+|++..++++...++.|+.|+... . ...+..+...+.+++|++++
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----------------------~-~~~~~~~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----------------------T-VDVLLDATAFTNGNAVDAQQ 97 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----------------------C-EEEEEESCSCEEEEEECTTS
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----------------------C-EEEEeCCCCccceeeECCCC
Confidence 345566788999999866888888899999998743 1 23344455678899999998
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEE----EEC-------------CCcEEE
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFAS----CSV-------------DGHIAI 303 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las----~s~-------------Dg~I~i 303 (358)
. ++++...++.|.+|+.. +..........+ ....+++++++|++. ++++ |.. .+.|..
T Consensus 98 ~-l~v~~~~~~~v~~~~~~--g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~ 173 (305)
T 3dr2_A 98 R-LVHCEHGRRAITRSDAD--GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYR 173 (305)
T ss_dssp C-EEEEETTTTEEEEECTT--SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEE
T ss_pred C-EEEEECCCCEEEEECCC--CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEE
Confidence 6 66555556789999974 332211111111 124577899999998 7776 332 256777
Q ss_pred EECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCC------CCEEEEeCCC
Q 018322 304 WDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDD------GTFSIHDLRL 352 (358)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~D------g~i~iwDlr~ 352 (358)
||..++. +..+. .....+.++|+|++ ..|+.+... +.|.+||+..
T Consensus 174 ~d~~~g~--~~~~~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 174 LPPDGSP--LQRMA-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp ECSSSCC--CEEEE-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEET
T ss_pred EcCCCCc--EEEEe-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecC
Confidence 8876543 22222 44567899999999 655555443 6899998753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-05 Score=70.10 Aligned_cols=157 Identities=8% Similarity=-0.061 Sum_probs=108.7
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
+...+..+.+.+++ .+.++...++.|..||..... ....+......+.++++.+++.
T Consensus 60 ~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~g~~---------------------~~~~~~~~~~~~~~i~~~~~g~- 116 (300)
T 2qc5_A 60 PDAKVMCLIVSSLG-DIWFTENGANKIGKLSKKGGF---------------------TEYPLPQPDSGPYGITEGLNGD- 116 (300)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE---------------------EEEECSSTTCCEEEEEECSTTC-
T ss_pred CCCcceeEEECCCC-CEEEEecCCCeEEEECCCCCe---------------------EEecCCCCCCCCccceECCCCC-
Confidence 44678999999988 677776667889999876311 1111222335688999999886
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
++++...++.|..|+.. +.... ..+......+.++++.+++. ++++....+.|..||. .+.........+...+
T Consensus 117 l~v~~~~~~~i~~~~~~--g~~~~--~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 190 (300)
T 2qc5_A 117 IWFTQLNGDRIGKLTAD--GTIYE--YDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAP 190 (300)
T ss_dssp EEEEETTTTEEEEECTT--SCEEE--EECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEEccCCCeEEEECCC--CCEEE--ccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCc
Confidence 77766667899999875 22210 11222345789999999998 8877777889999998 4322211222344568
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
..|++.+++ .++++....+.|.+||.
T Consensus 191 ~~i~~d~~g-~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 191 VGITSGNDG-ALWFVEIMGNKIGRITT 216 (300)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT
T ss_pred ceEEECCCC-CEEEEccCCCEEEEEcC
Confidence 999999988 77777766778999987
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.51 E-value=6.6e-06 Score=73.49 Aligned_cols=158 Identities=11% Similarity=0.072 Sum_probs=101.9
Q ss_pred cCCCceeEEEEcCCCCcEEEE-------EeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE-----cCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICAS-------WADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-----GGHKD 230 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat-------~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~ 230 (358)
..-....++.|.+++ .++++ ...++.|.+||.... +. ..+ .++..
T Consensus 15 ~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g---------------------~~-~~~~~~~~~~~~~ 71 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTG---------------------KK-TVICKPEVNGYGG 71 (314)
T ss_dssp CCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTC---------------------CE-EEEECCEETTEEC
T ss_pred ccCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCC---------------------cE-EEEEecccCCCCC
Confidence 344567899999888 67777 567789999997651 11 111 12445
Q ss_pred CeEEEEeCCC-CCCeEEEEeCCCcEEEEecCCCCCcccC-CCcccc-CCCcEEEEEECCCCCCEEEEEECC---------
Q 018322 231 EGYAIDWNPI-TTGRLVTGDCNSCIYLWEPASDATWNVD-PNPFIG-HSASVEDLQWSPTEPDVFASCSVD--------- 298 (358)
Q Consensus 231 ~v~~l~~s~~-~~~~l~sgs~dg~I~lwd~~~~~~~~~~-~~~~~~-h~~~V~~v~~sp~~~~~las~s~D--------- 298 (358)
.+.+++++++ + .|..++....|.+||.. +..... .....+ ....+.++++++++. ++++...+
T Consensus 72 ~~~~i~~~~~~g--~l~v~~~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 72 IPAGCQCDRDAN--QLFVADMRLGLLVVQTD--GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTR 146 (314)
T ss_dssp CEEEEEECSSSS--EEEEEETTTEEEEEETT--SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCB
T ss_pred CCceEEEecCCC--cEEEEECCCCEEEEeCC--CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccc
Confidence 7889999998 5 44445445579999986 332211 111111 224588999999997 77766554
Q ss_pred ------CcEEEEECCCCCCeeEEEecCCCCeEEEEEe----CCCCcEEEEEeCCCCEEEEeCC
Q 018322 299 ------GHIAIWDTRVGKSALTSFKAHNADVNVISWN----RLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 299 ------g~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~----p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+.|..||.. + . +..+..+....+.++|+ |++..++++...++.|.+||+.
T Consensus 147 ~~~~~~~~l~~~~~~-g-~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~ 206 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-G-Q-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp TTSSSCEEEEEECTT-S-C-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred cccCCCCeEEEECCC-C-C-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence 567777764 2 2 22333344457899999 9983345555677899999975
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.47 E-value=8.5e-06 Score=72.87 Aligned_cols=152 Identities=10% Similarity=0.099 Sum_probs=98.1
Q ss_pred CceeEEEEcCCCCcEEEEE-eC--------CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 166 GCVNRIRAMTQNPHICASW-AD--------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~-s~--------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
..++.+.+.|++ .++++. .. .....||.+... .. +..+..+......++
T Consensus 98 ~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~--------------------g~-~~~~~~~~~~pngi~ 155 (297)
T 3g4e_A 98 NRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPD--------------------HH-VKKYFDQVDISNGLD 155 (297)
T ss_dssp EEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTT--------------------SC-EEEEEEEESBEEEEE
T ss_pred CCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECC--------------------CC-EEEEeeccccccceE
Confidence 457889999999 455543 22 123455555431 11 112222334567899
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecC-CCCCcc--cCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPA-SDATWN--VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~-~~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
|+|++..++++.+.++.|.+|++. ..+... .....+..+......+++++++. ++++....+.|..||..++ ..+
T Consensus 156 ~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG-~~~ 233 (297)
T 3g4e_A 156 WSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTG-KRL 233 (297)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTC-CEE
T ss_pred EcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCc-eEE
Confidence 999997344566667899999974 222211 00111222345678899999997 8888888899999999874 466
Q ss_pred EEEecCCCCeEEEEEe-CCCCcEEEEEeC
Q 018322 314 TSFKAHNADVNVISWN-RLASCLLASGSD 341 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~-p~~~~~lasgs~ 341 (358)
..+..+...+++++|. |++..+++|...
T Consensus 234 ~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 234 QTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 6676676789999998 887556666543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00012 Score=67.87 Aligned_cols=164 Identities=11% Similarity=-0.003 Sum_probs=97.3
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeC
Q 018322 171 IRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDC 250 (358)
Q Consensus 171 i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~ 250 (358)
+.+.|.++..+++.+.||.+.+++. ...... .. ...+. +.+...-.....+.+++.+++++ +.
T Consensus 170 ~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~-~~------------~~~~~--~~~~~p~~~~~~~~~~~~~~~~~-~~ 232 (373)
T 2mad_H 170 YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG-AG------------LVGAM--LTAAQNLLTQPAQANKSGRIVWP-VY 232 (373)
T ss_pred EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE-EE------------ecccc--ccCCcceeecceeEecCCEEEEE-cC
Confidence 4566777677788889999999999 421100 00 00010 11111111234455665533444 36
Q ss_pred CCcEEEEecCCCCCcccCCCcccc----------CCCcEEEEEECCCCCCEEEEEEC---------CCcEEEEECCCCCC
Q 018322 251 NSCIYLWEPASDATWNVDPNPFIG----------HSASVEDLQWSPTEPDVFASCSV---------DGHIAIWDTRVGKS 311 (358)
Q Consensus 251 dg~I~lwd~~~~~~~~~~~~~~~~----------h~~~V~~v~~sp~~~~~las~s~---------Dg~I~iwD~r~~~~ 311 (358)
.+.+.+.|+........ ..+.- .......+.++|++..++++... .+.|.++|+.+. +
T Consensus 233 ~~~v~vid~~~~~~~v~--~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~-~ 309 (373)
T 2mad_H 233 SGKILQADISAAGATNK--APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-Q 309 (373)
T ss_pred CceEEEEeccCCcceEe--eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC-E
Confidence 78899999865321111 11110 12234457889998855555442 357999999884 4
Q ss_pred eeEEEecCCCCeEEEEEeCCCCcEEEEEe-CCCCEEEEeCCCCCC
Q 018322 312 ALTSFKAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKV 355 (358)
Q Consensus 312 ~~~~~~~h~~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDlr~~~~ 355 (358)
.+.++. -......+.|+|++..+++++. .++.|.+||+++++.
T Consensus 310 vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 310 TSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 556664 3335789999999943777776 589999999998763
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.43 E-value=7.5e-06 Score=77.00 Aligned_cols=160 Identities=11% Similarity=0.060 Sum_probs=104.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
.....|+|.+++ .++++...++.|++||... ......... ..... ++|++++. .|
T Consensus 131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~---------------------g~~~~~~~~-~~~~~-ia~~~~g~-~l 185 (409)
T 3hrp_A 131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDD---------------------NKVTTVHPG-FKGGK-PAVTKDKQ-RV 185 (409)
T ss_dssp CCEEEEEECSTT-EEEEEETTTTEEEEEETTT---------------------TEEEEEEET-CCBCB-CEECTTSS-EE
T ss_pred CCceEEEEeCCC-CEEEEecCCCcEEEEECCC---------------------CEEEEeecc-CCCCc-eeEecCCC-cE
Confidence 467789999988 6888878889999999875 122222222 33344 99999997 88
Q ss_pred EEEeCCC--cEEEEecCCCCCcccCCCcc-ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE---EecC
Q 018322 246 VTGDCNS--CIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS---FKAH 319 (358)
Q Consensus 246 ~sgs~dg--~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~---~~~h 319 (358)
++++.++ .|.+|+......... ...+ ......+.+++++|.+..+++ +..++.|+.||...+...+.. ...+
T Consensus 186 ~~~d~~~~~~I~~~d~~~~~~~~~-~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~ 263 (409)
T 3hrp_A 186 YSIGWEGTHTVYVYMKASGWAPTR-IGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGS 263 (409)
T ss_dssp EEEBSSTTCEEEEEEGGGTTCEEE-EEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSC
T ss_pred EEEecCCCceEEEEEcCCCceeEE-eeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCC
Confidence 8887766 788888765322110 0011 113456788999995542444 677889999999874321110 1112
Q ss_pred CCC--eEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 320 NAD--VNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 320 ~~~--V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
... .+.|+|+|++..++++-..++.|+.|+...
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence 221 138999996437888877888999998753
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=6.3e-05 Score=68.16 Aligned_cols=155 Identities=7% Similarity=0.015 Sum_probs=98.0
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC----C-CCCeEEEEe
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG----H-KDEGYAIDW 237 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h-~~~v~~l~~ 237 (358)
.+...+.++.+.|++ .++++ +.+ .|.+||.... .. ..+.. . ...+.++.+
T Consensus 87 ~~~~~v~~i~~~~dg-~l~v~-~~~-gl~~~d~~~g---------------------~~-~~~~~~~~~~~~~~~~~i~~ 141 (326)
T 2ghs_A 87 ALPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATG---------------------VL-TLHAELESDLPGNRSNDGRM 141 (326)
T ss_dssp ECSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTC---------------------CE-EEEECSSTTCTTEEEEEEEE
T ss_pred ECCCcceEEEEeCCC-eEEEE-ECC-CEEEEECCCC---------------------cE-EEEeeCCCCCCCCCCCCEEE
Confidence 345789999999998 55554 344 4899998652 11 11111 1 235789999
Q ss_pred CCCCCCeEEEEeC------CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC--CC
Q 018322 238 NPITTGRLVTGDC------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR--VG 309 (358)
Q Consensus 238 s~~~~~~l~sgs~------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r--~~ 309 (358)
+|++. ++++... .+.|..++ + +... .+..+....+.++|+|++..++++.+.++.|.+||+. ++
T Consensus 142 d~~G~-l~v~~~~~~~~~~~~~l~~~~--~-g~~~----~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G 213 (326)
T 2ghs_A 142 HPSGA-LWIGTMGRKAETGAGSIYHVA--K-GKVT----KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG 213 (326)
T ss_dssp CTTSC-EEEEEEETTCCTTCEEEEEEE--T-TEEE----EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred CCCCC-EEEEeCCCcCCCCceEEEEEe--C-CcEE----EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC
Confidence 99987 6554432 24455555 2 3321 2222334578899999998455666667899999986 43
Q ss_pred -CC----eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 310 -KS----ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 310 -~~----~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.. ....+......+..+++.+++ .++++...++.|.+||..
T Consensus 214 l~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 214 LPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp CBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECTT
T ss_pred CcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECCC
Confidence 11 112222234557889999999 777776667889999873
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-07 Score=87.73 Aligned_cols=140 Identities=10% Similarity=0.060 Sum_probs=72.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
.++++++.||.|+.||..+ ++.+..+.. ..+.+..+...+. .+++++.||.|+.||
T Consensus 10 ~~v~~gs~dg~v~a~d~~t---------------------G~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRT---------------------GSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLG 65 (369)
T ss_dssp TEEEEEETTSEEEEEETTT---------------------CCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-
T ss_pred CEEEEEcCCCEEEEEECCC---------------------CCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEE
Confidence 5788899999999999877 455555544 3444444455555 778888999999999
Q ss_pred cCCCCC-cccCCCcccc--CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcE
Q 018322 259 PASDAT-WNVDPNPFIG--HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335 (358)
Q Consensus 259 ~~~~~~-~~~~~~~~~~--h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~ 335 (358)
..++.. |... ..... ...++ +. .+. .+++|+.++.|+.||.++++ .+..+..+. .+.++|.+ ..
T Consensus 66 ~~tG~~~w~~~-~~~~~~~~~sp~----~~-~~~-~v~~g~~dg~v~a~D~~tG~-~~w~~~~~~----~~~~~p~~-~~ 132 (369)
T 2hz6_A 66 SKNNEGLTKLP-FTIPELVQASPC----RS-SDG-ILYMGKKQDIWYVIDLLTGE-KQQTLSSAF----ADSLSPST-SL 132 (369)
T ss_dssp ----CCSEECS-CCHHHHHTTCSC----C-------CCCCEEEEEEEEECCC----------------------------
T ss_pred CCCCceeeeee-ccCccccccCce----Ee-cCC-EEEEEeCCCEEEEEECCCCc-EEEEecCCC----cccccccC-CE
Confidence 976432 2210 00000 11111 11 233 67788889999999999864 455554443 23456666 78
Q ss_pred EEEEeCCCCEEEEeCCCCCC
Q 018322 336 LASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 336 lasgs~Dg~i~iwDlr~~~~ 355 (358)
|++++.|+.|+.||.++++.
T Consensus 133 v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 133 LYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp EEEEEEEEEEECCCSSSSSC
T ss_pred EEEEecCCEEEEEECCCCCE
Confidence 88889999999999988764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.8e-07 Score=85.58 Aligned_cols=154 Identities=12% Similarity=0.030 Sum_probs=74.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCC-eE-EEEeCCCCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE-GY-AIDWNPITTG 243 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~-~l~~s~~~~~ 243 (358)
+.+.+..+..++ .++++++.||.|+.||... .+.+..+..+... +. +.... .+ +
T Consensus 38 ~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~t---------------------G~~~w~~~~~~~~~~~~sp~~~-~~-~ 93 (369)
T 2hz6_A 38 DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKN---------------------NEGLTKLPFTIPELVQASPCRS-SD-G 93 (369)
T ss_dssp CCSCCCC------CCEEECTTTCCEEEC--------------------------CCSEECSCCHHHHHTTCSCC------
T ss_pred CCceecceEcCC-CEEEEeCCCCEEEEEECCC---------------------CceeeeeeccCccccccCceEe-cC-C
Confidence 455555555555 5777778999999999865 2222222222110 00 00001 22 3
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.+++|+.++.|+.||..++.. . ..+..+. .+.++|.+. .+++++.++.|+.||.+++. .+..+..+. .
T Consensus 94 ~v~~g~~dg~v~a~D~~tG~~-~---w~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG~-~~W~~~~~~--~ 161 (369)
T 2hz6_A 94 ILYMGKKQDIWYVIDLLTGEK-Q---QTLSSAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTRE-LRWNATYFD--Y 161 (369)
T ss_dssp -CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSS-CCCEEEEEE--E
T ss_pred EEEEEeCCCEEEEEECCCCcE-E---EEecCCC----cccccccCC-EEEEEecCCEEEEEECCCCC-EEEeEeccc--c
Confidence 778888899999999987433 1 2233222 234567666 78888999999999999864 444432211 1
Q ss_pred EEEEEeCCC--CcEEEEEeCCCCEEEEeCCCCCC
Q 018322 324 NVISWNRLA--SCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 324 ~~i~~~p~~--~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
....+..+. ...+++++.+|.|..||.++++.
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 162 AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred cCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 122233321 02466678899999999988753
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00094 Score=58.26 Aligned_cols=160 Identities=7% Similarity=-0.065 Sum_probs=103.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
..+..+.+.+.+..++++-...+.|..+++... .....+........+|++++.+..++
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~---------------------~~~~~~~~~~~~p~~ia~d~~~~~ly 94 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG---------------------EPTTIIRQDLGSPEGIALDHLGRTIF 94 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSC---------------------CCEEEECTTCCCEEEEEEETTTTEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCC---------------------CcEEEEECCCCCccEEEEEecCCeEE
Confidence 357889999976577777777889999998651 22222222224678999998765244
Q ss_pred EEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC--CCcEEEEECCCCCCeeEEE-ecCCCC
Q 018322 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV--DGHIAIWDTRVGKSALTSF-KAHNAD 322 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~--Dg~I~iwD~r~~~~~~~~~-~~h~~~ 322 (358)
++-...+.|.++++....... ...........++++|.+..++++... .+.|..+++.... ...+ ......
T Consensus 95 v~d~~~~~I~~~~~~g~~~~~----~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~--~~~~~~~~~~~ 168 (267)
T 1npe_A 95 WTDSQLDRIEVAKMDGTQRRV----LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGL 168 (267)
T ss_dssp EEETTTTEEEEEETTSCSCEE----EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEECTTCSC
T ss_pred EEECCCCEEEEEEcCCCCEEE----EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC--cEEEEECCCCC
Confidence 455557799999985422111 111112457899999976646666544 4688888876422 2222 223345
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+.|+|++++..++++-...+.|.++|+..
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence 789999998746667777778999999864
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00026 Score=66.53 Aligned_cols=157 Identities=20% Similarity=0.163 Sum_probs=99.9
Q ss_pred eeEEEEcCCCCcEEEEEeCC------CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC--C-CCCeEEEEeC
Q 018322 168 VNRIRAMTQNPHICASWADT------GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG--H-KDEGYAIDWN 238 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~d------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h-~~~v~~l~~s 238 (358)
-..+.+.|++ +++++..+ |.|.++|..+ .+.+..+.. . ..-.+.+.|+
T Consensus 140 Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T---------------------~~v~~~~~~~~~~~~~~Yd~~~~ 196 (462)
T 2ece_A 140 LHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYS---------------------FEPLGKWEIDRGDQYLAYDFWWN 196 (462)
T ss_dssp EEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTT---------------------CCEEEECCSBCTTCCCCCCEEEE
T ss_pred ccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCC---------------------CeEEEEEccCCCCccccceEEEC
Confidence 3456788988 55565554 7899999876 344444431 1 1235678999
Q ss_pred CCCCCeEEEEe-------------------CCCcEEEEecCCCCCcccCCCcccc--CCCcEEEEEE--CCCCCCEEEEE
Q 018322 239 PITTGRLVTGD-------------------CNSCIYLWEPASDATWNVDPNPFIG--HSASVEDLQW--SPTEPDVFASC 295 (358)
Q Consensus 239 ~~~~~~l~sgs-------------------~dg~I~lwd~~~~~~~~~~~~~~~~--h~~~V~~v~~--sp~~~~~las~ 295 (358)
|.++ .+++.. ...+|.+||+.+. +.. ..+.- .......|.| +|+++..++++
T Consensus 197 p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~---~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~ 271 (462)
T 2ece_A 197 LPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRI---HSLTLGEENRMALELRPLHDPTKLMGFINM 271 (462)
T ss_dssp TTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEE---EEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred CCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEe---eEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence 9998 888874 3689999999763 322 22221 1123445555 99999777777
Q ss_pred E-----CCCcEEEEECCCCCC-eeEE--EecC----------------CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 296 S-----VDGHIAIWDTRVGKS-ALTS--FKAH----------------NADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 296 s-----~Dg~I~iwD~r~~~~-~~~~--~~~h----------------~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
- .+++|.+|....+.. .... +... ......|.+++++..++++.-..+.|.+||+.
T Consensus 272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 7 788998776543211 1111 1110 24467899999995555666567899999986
Q ss_pred C
Q 018322 352 L 352 (358)
Q Consensus 352 ~ 352 (358)
.
T Consensus 352 d 352 (462)
T 2ece_A 352 N 352 (462)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.04 E-value=7.6e-05 Score=68.13 Aligned_cols=173 Identities=10% Similarity=0.018 Sum_probs=96.7
Q ss_pred CceeEEEEcCCCCcEEEEEe---CCCcEEEEeCCCCcc-ccccc-cccccCCCCCCCCCCCcEEEcC------CCCCeEE
Q 018322 166 GCVNRIRAMTQNPHICASWA---DTGHVQVWDLRSHLN-ALAES-ETIVGQGAPQVSNQSPLVKFGG------HKDEGYA 234 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s---~dg~V~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~ 234 (358)
..++.+++.+.+..++++-. .++.|.+||+..... ..... ................+..... -...+..
T Consensus 120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~g 199 (343)
T 2qe8_A 120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNG 199 (343)
T ss_dssp CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEE
T ss_pred cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccce
Confidence 45789999986546667766 678999999875211 10000 0000000000000000000000 1124688
Q ss_pred EEeCCCCCCeEEEEeCCC-cEEEEecCC--CCCc----ccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 235 IDWNPITTGRLVTGDCNS-CIYLWEPAS--DATW----NVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg-~I~lwd~~~--~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
|+|+|++. .|+.++..+ .|..++... .+.. ........++......+++++++. ++++...++.|.+||..
T Consensus 200 ia~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~ 277 (343)
T 2qe8_A 200 IVLDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDLAHSAIGVITSA 277 (343)
T ss_dssp EEECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEGGGTEEEEEETT
T ss_pred eEeccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEccCCCeEEEEECC
Confidence 99999997 788777666 444444311 0100 000001223445567799999987 99999999999999984
Q ss_pred CCCCeeEEEe--cCCCCeEEEEEeCCCCcEEEEEeCCC
Q 018322 308 VGKSALTSFK--AHNADVNVISWNRLASCLLASGSDDG 343 (358)
Q Consensus 308 ~~~~~~~~~~--~h~~~V~~i~~~p~~~~~lasgs~Dg 343 (358)
.+. +..+. .+...+..++|.+++ .++++.+..+
T Consensus 278 ~G~--~~~~~~~~~~~~p~~va~~~~g-~l~v~~~~~~ 312 (343)
T 2qe8_A 278 DRA--YKLLVTDEKLSWTDSFNFGSDG-YLYFDCNQLH 312 (343)
T ss_dssp TTE--EEEEEECGGGSCEEEEEECTTS-CEEEEECCGG
T ss_pred CCC--EEEEEECCceecCCeeEECCCC-cEEEEeCccc
Confidence 432 22222 234568999999988 7877776443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00039 Score=64.20 Aligned_cols=71 Identities=10% Similarity=-0.004 Sum_probs=52.1
Q ss_pred EEECCCCCCEEEEEE-C-------CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEe-CCCCEEEEeCCC
Q 018322 282 LQWSPTEPDVFASCS-V-------DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRL 352 (358)
Q Consensus 282 v~~sp~~~~~las~s-~-------Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDlr~ 352 (358)
+.++|++..++++.. . ++.+.++|+.+. +.+..+.... ....|.|+|++..++++.. .++.|.++|+.+
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~-~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-QTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC-eEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 678888885665544 2 235669999985 4555553332 5789999999956788887 699999999998
Q ss_pred CC
Q 018322 353 LK 354 (358)
Q Consensus 353 ~~ 354 (358)
++
T Consensus 347 ~k 348 (368)
T 1mda_H 347 DQ 348 (368)
T ss_dssp CE
T ss_pred Cc
Confidence 75
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00031 Score=65.05 Aligned_cols=131 Identities=10% Similarity=-0.055 Sum_probs=84.0
Q ss_pred cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEe----------CCCcEEEEe
Q 018322 189 HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD----------CNSCIYLWE 258 (358)
Q Consensus 189 ~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs----------~dg~I~lwd 258 (358)
+|.+||... .+.+..+.....+ .++++|++. +|+++. .++.|.+||
T Consensus 48 ~v~v~D~~t---------------------~~~~~~i~~g~~p--~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 48 QQWVLDAGS---------------------GSILGHVNGGFLP--NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred EEEEEECCC---------------------CeEEEEecCCCCC--CeEECCCCC-EEEEEeccccccccCCCCCeEEEEE
Confidence 789999876 3344444433333 899999998 777765 367899999
Q ss_pred cCCCCCcccCCCccc--c---CCCcEEEEEECCCCCCEEEEEE-C-CCcEEEEECCCCCCeeEE-EecCCCCeEEEEEeC
Q 018322 259 PASDATWNVDPNPFI--G---HSASVEDLQWSPTEPDVFASCS-V-DGHIAIWDTRVGKSALTS-FKAHNADVNVISWNR 330 (358)
Q Consensus 259 ~~~~~~~~~~~~~~~--~---h~~~V~~v~~sp~~~~~las~s-~-Dg~I~iwD~r~~~~~~~~-~~~h~~~V~~i~~~p 330 (358)
..+...... .... . +......+.|+|+++ .++.+. . ++.|.++| .++ +.+.. +.. .. ++.+.|
T Consensus 104 ~~t~~~~~~--i~~~~~~~~~~g~~p~~~~~spDG~-~l~v~n~~~~~~v~viD-~t~-~~~~~~i~~-~~---~~~~~~ 174 (373)
T 2mad_H 104 PVTFLPIAD--IELPDAPRFDVGPYSWMNANTPNNA-DLLFFQFAAGPAVGLVV-QGG-SSDDQLLSS-PT---CYHIHP 174 (373)
T ss_pred CCCCcEEEE--EECCCccccccCCCccceEECCCCC-EEEEEecCCCCeEEEEE-CCC-CEEeEEcCC-Cc---eEEEEe
Confidence 976322110 0010 0 112345789999999 555544 3 58899999 774 45544 322 11 245666
Q ss_pred CCCcEEEEEeCCCCEEEEeCCCC
Q 018322 331 LASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 331 ~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.+...+++.+.||.+.+||+ ++
T Consensus 175 ~~~~~~~~~~~dg~~~~vd~-~g 196 (373)
T 2mad_H 175 GAPSTFYLLCAQGGLAKTDH-AG 196 (373)
T ss_pred CCCceEEEEcCCCCEEEEEC-CC
Confidence 66567777888999999988 54
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.99 E-value=9.4e-05 Score=68.60 Aligned_cols=147 Identities=6% Similarity=-0.065 Sum_probs=93.4
Q ss_pred EcCCCCcEEEEEeC----CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEE
Q 018322 173 AMTQNPHICASWAD----TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTG 248 (358)
Q Consensus 173 ~~p~~~~~lat~s~----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 248 (358)
..|++..++++-.. ++.|.+.|..+ .+.+..+..-..+ . +.++|++. +|+++
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t---------------------~~v~~~I~vG~~P-~-va~spDG~-~lyVa 95 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEA---------------------GRVIGMIDGGFLP-N-PVVADDGS-FIAHA 95 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTT---------------------TEEEEEEEECSSC-E-EEECTTSS-CEEEE
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCC---------------------CeEEEEEECCCCC-c-EEECCCCC-EEEEE
Confidence 35666555555433 67999999887 4555555443334 4 99999998 66665
Q ss_pred e----------CCCcEEEEecCCCCCcccCCCccc-c------CCCcEEEEEECCCCCCEEEEEEC-CCcEEEEECCCCC
Q 018322 249 D----------CNSCIYLWEPASDATWNVDPNPFI-G------HSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGK 310 (358)
Q Consensus 249 s----------~dg~I~lwd~~~~~~~~~~~~~~~-~------h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~ 310 (358)
+ .++.|.+||..+... . ..+. + .......+.|+|+++.++++... ++.|.++|+.+.
T Consensus 96 n~~~~r~~~G~~~~~VsviD~~t~~v-~---~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~- 170 (386)
T 3sjl_D 96 STVFSRIARGERTDYVEVFDPVTLLP-T---ADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK- 170 (386)
T ss_dssp EEEEEETTEEEEEEEEEEECTTTCCE-E---EEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-
T ss_pred cccccccccCCCCCEEEEEECCCCeE-E---EEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-
Confidence 4 367899999987432 1 1111 1 11245568999999955554433 789999999984
Q ss_pred CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 311 SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+.+.++.... |..+.|.+.+.+++.+.||++.+.++..
T Consensus 171 ~vv~tI~v~g----~~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 171 AFKRMLDVPD----CYHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp EEEEEEECCS----EEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred cEEEEEECCC----cceeecCCCceeEEECCCCCEEEEECCC
Confidence 4555553221 1223344446666777788888888765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0011 Score=62.23 Aligned_cols=152 Identities=10% Similarity=0.029 Sum_probs=94.1
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc------C-CCCCeEEEEeCCCCCCeEEE
Q 018322 175 TQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG------G-HKDEGYAIDWNPITTGRLVT 247 (358)
Q Consensus 175 p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~l~~s~~~~~~l~s 247 (358)
+++..+++++..+++|+|+|+....... +...++. . -...-..+..+|++ ++++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p-----------------~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs 153 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREP-----------------KIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYIS 153 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSC-----------------EEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCc-----------------eeeeeechhhcccccCCCcccceeECCCe--EEEE
Confidence 6677888889999999999997532111 1222221 0 11245567888987 5666
Q ss_pred EeCC------CcEEEEecCCCCCcccCCCccccCC-CcEEEEEECCCCCCEEEEEE-------------------CCCcE
Q 018322 248 GDCN------SCIYLWEPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCS-------------------VDGHI 301 (358)
Q Consensus 248 gs~d------g~I~lwd~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s-------------------~Dg~I 301 (358)
+..+ |.|.+.|..+...... ....... ..-.++.|+|+++ ++++.. ...+|
T Consensus 154 ~~g~~~g~~~g~v~vlD~~T~~v~~~--~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V 230 (462)
T 2ece_A 154 ALGNEEGEGPGGILMLDHYSFEPLGK--WEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRI 230 (462)
T ss_dssp EEEETTSCSCCEEEEECTTTCCEEEE--CCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred cCCCcCCCCCCeEEEEECCCCeEEEE--EccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEE
Confidence 5544 7899999876432110 1111122 2244688999998 777664 47899
Q ss_pred EEEECCCCCCeeEEEecC--CCCeEEEEE--eCCCCcEEEEEe-----CCCCEEEEe
Q 018322 302 AIWDTRVGKSALTSFKAH--NADVNVISW--NRLASCLLASGS-----DDGTFSIHD 349 (358)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h--~~~V~~i~~--~p~~~~~lasgs-----~Dg~i~iwD 349 (358)
.+||+.+. +.+.++..- ......|.| +|++...++++- .+++|.+|.
T Consensus 231 ~v~D~~~~-k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~ 286 (462)
T 2ece_A 231 HFWDLRKR-KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWF 286 (462)
T ss_dssp EEEETTTT-EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEE
T ss_pred EEEECCCC-cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEE
Confidence 99999974 455566432 123455656 999944555555 667886654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00018 Score=65.63 Aligned_cols=166 Identities=6% Similarity=-0.061 Sum_probs=100.8
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeC-----CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc------CCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWAD-----TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG------GHKDE 231 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~-----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~ 231 (358)
.|...+.+|++.+++ .++++-.. .+.|.+||+... +.+..+. .+...
T Consensus 64 ~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg---------------------~~~~~~~~~~~~~~~~~~ 121 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNN---------------------QLSRVIYLPPPITLSNSF 121 (343)
T ss_dssp CCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTT---------------------EEEEEEECCTTTSCTTCC
T ss_pred cceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCC---------------------eEEEEEECChhhcccccc
Confidence 356789999999998 56665433 578999998752 2122221 12234
Q ss_pred eEEEEeCCCCCCeEEEEe---CCCcEEEEecCCCCCcccCCC---------cc--cc--------------CCCcEEEEE
Q 018322 232 GYAIDWNPITTGRLVTGD---CNSCIYLWEPASDATWNVDPN---------PF--IG--------------HSASVEDLQ 283 (358)
Q Consensus 232 v~~l~~s~~~~~~l~sgs---~dg~I~lwd~~~~~~~~~~~~---------~~--~~--------------h~~~V~~v~ 283 (358)
...|++++.+...+++.. .++.|.+||+.++..+..... .+ .+ ....++.|+
T Consensus 122 ~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia 201 (343)
T 2qe8_A 122 VNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV 201 (343)
T ss_dssp CCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE
T ss_pred cceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE
Confidence 578999876541344544 578999999875432221100 00 00 012468899
Q ss_pred ECCCCCCEEEEEECCC-cEEEEECC---CCC----Ce--eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 284 WSPTEPDVFASCSVDG-HIAIWDTR---VGK----SA--LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 284 ~sp~~~~~las~s~Dg-~I~iwD~r---~~~----~~--~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
|+|++. .|+.+...+ .|..++.. .+. .. .....++......+++.+++ .++++...++.|.+||..+
T Consensus 202 ~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~ 278 (343)
T 2qe8_A 202 LDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSAD 278 (343)
T ss_dssp ECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTT
T ss_pred eccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCC
Confidence 999998 566665554 55555532 110 00 01122344456778999998 8999988899999999833
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00012 Score=65.46 Aligned_cols=109 Identities=10% Similarity=0.071 Sum_probs=69.0
Q ss_pred CCeEEEEeCCCCCCeEEEEeCC------CcEEEEecCCCCCcccCCCcc-ccCCCcEEEEEECCCCCCEEEEEECCCcEE
Q 018322 230 DEGYAIDWNPITTGRLVTGDCN------SCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIA 302 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~d------g~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (358)
.....++|+|++. .|+.+... +.|.+|++...+ .. ....+ .........+++++++. ++++. .+ .|.
T Consensus 188 ~~p~gl~~spdg~-~lyv~~~~~~~~~~~~i~~~~~~~~~-l~-~~~~~~~~~~~~pdgi~~d~~G~-lwv~~-~~-gv~ 261 (305)
T 3dr2_A 188 DHPNGLAFSPDEQ-TLYVSQTPEQGHGSVEITAFAWRDGA-LH-DRRHFASVPDGLPDGFCVDRGGW-LWSSS-GT-GVC 261 (305)
T ss_dssp SSEEEEEECTTSS-EEEEEECCC---CCCEEEEEEEETTE-EE-EEEEEECCSSSCCCSEEECTTSC-EEECC-SS-EEE
T ss_pred CCCcceEEcCCCC-EEEEEecCCcCCCCCEEEEEEecCCC-cc-CCeEEEECCCCCCCeEEECCCCC-EEEec-CC-cEE
Confidence 4567899999997 77776655 789999986532 10 00111 11233456789999998 65554 44 499
Q ss_pred EEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 303 IWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
+|+... ..+..+..+. .+..++|.+++ ..|..++.++ +..++
T Consensus 262 ~~~~~g--~~~~~~~~~~-~~~~~~f~~d~-~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 262 VFDSDG--QLLGHIPTPG-TASNCTFDQAQ-QRLFITGGPC-LWMLP 303 (305)
T ss_dssp EECTTS--CEEEEEECSS-CCCEEEECTTS-CEEEEEETTE-EEEEE
T ss_pred EECCCC--CEEEEEECCC-ceeEEEEeCCC-CEEEEEcCCe-EEEEE
Confidence 999843 4555555444 58889999888 5555555554 43333
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.001 Score=58.39 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=103.0
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEe
Q 018322 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD 249 (358)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs 249 (358)
.+.+. +..+.++.-.++.|.++|..+ .+.+..+..-....+.|++ ++. +|+++.
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~t---------------------~~v~~~i~~g~~~g~glt~--Dg~-~l~vs~ 123 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRRT---------------------LSNIKNFTHQMKDGWGLAT--DGK-ILYGSD 123 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETTT---------------------TEEEEEEECCSSSCCEEEE--CSS-SEEEEC
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECCC---------------------CcEEEEEECCCCCeEEEEE--CCC-EEEEEC
Confidence 34444 435666666789999999876 3444445321245556655 565 666666
Q ss_pred CCCcEEEEecCCCCCcccCCCccccC---CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC-------
Q 018322 250 CNSCIYLWEPASDATWNVDPNPFIGH---SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH------- 319 (358)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~~~~~~~~h---~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h------- 319 (358)
.++.|.++|..+...... .....+ -..++.+.|. ++. +++....++.|.+.|+.++ ..+..+...
T Consensus 124 gs~~l~viD~~t~~v~~~--I~Vg~~~~p~~~~nele~~-dg~-lyvn~~~~~~V~vID~~tg-~V~~~I~~~g~~~~~~ 198 (266)
T 2iwa_A 124 GTSILYEIDPHTFKLIKK--HNVKYNGHRVIRLNELEYI-NGE-VWANIWQTDCIARISAKDG-TLLGWILLPNLRKKLI 198 (266)
T ss_dssp SSSEEEEECTTTCCEEEE--EECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEEETTTC-CEEEEEECHHHHHHHH
T ss_pred CCCeEEEEECCCCcEEEE--EEECCCCcccccceeEEEE-CCE-EEEecCCCCeEEEEECCCC-cEEEEEECCCcccccc
Confidence 788999999876432110 011111 1246778888 565 8888878899999999985 455555321
Q ss_pred ------CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 320 ------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 320 ------~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
....+.|+|+|++.++++++...+.|.+.++....
T Consensus 199 ~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 199 DEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp HTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred cccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 13569999999987889999889999999887653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0021 Score=55.37 Aligned_cols=135 Identities=18% Similarity=0.256 Sum_probs=88.8
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 018322 177 NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYL 256 (358)
Q Consensus 177 ~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~l 256 (358)
+..+....-.++.+.+||..+ .+.+.++.. ...+++|++. +. .|+.+..++.|.+
T Consensus 74 ~~~ly~ltw~~~~v~v~D~~t---------------------l~~~~ti~~-~~~Gwglt~d--g~-~L~vSdgs~~l~~ 128 (243)
T 3mbr_X 74 RDRLIQLTWRNHEGFVYDLAT---------------------LTPRARFRY-PGEGWALTSD--DS-HLYMSDGTAVIRK 128 (243)
T ss_dssp TTEEEEEESSSSEEEEEETTT---------------------TEEEEEEEC-SSCCCEEEEC--SS-CEEEECSSSEEEE
T ss_pred CCEEEEEEeeCCEEEEEECCc---------------------CcEEEEEeC-CCCceEEeeC--CC-EEEEECCCCeEEE
Confidence 445666666789999999987 455555543 2466778754 44 6666667889999
Q ss_pred EecCCCCCcccCCCccccCC---CcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec-------------CC
Q 018322 257 WEPASDATWNVDPNPFIGHS---ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA-------------HN 320 (358)
Q Consensus 257 wd~~~~~~~~~~~~~~~~h~---~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~-------------h~ 320 (358)
+|..+...... .....+. ..++.+.|. ++. +++....+..|.+.|.+++ ..+..+.. -.
T Consensus 129 iDp~t~~~~~~--I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~ 203 (243)
T 3mbr_X 129 LDPDTLQQVGS--IKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASG-KVVAWIDLQALVPDADALTDSTN 203 (243)
T ss_dssp ECTTTCCEEEE--EECEETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTS
T ss_pred EeCCCCeEEEE--EEEccCCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCC-CEEEEEECCcCccccccccCCcC
Confidence 99877432111 1111121 345667776 565 8888878889999999986 34444431 11
Q ss_pred CCeEEEEEeCCCCcEEEEEeC
Q 018322 321 ADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~ 341 (358)
.-.|.|+|+|.+.++++||=.
T Consensus 204 ~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 204 DVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp SCEEEEEEETTTTEEEEEETT
T ss_pred CceEEEEEcCCCCEEEEECCC
Confidence 356999999988677887743
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00095 Score=61.83 Aligned_cols=153 Identities=14% Similarity=0.086 Sum_probs=94.4
Q ss_pred EEEEcCCCCcEEEEEe---------CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC-------CCCeE
Q 018322 170 RIRAMTQNPHICASWA---------DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH-------KDEGY 233 (358)
Q Consensus 170 ~i~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~ 233 (358)
.+.++|++..++++.+ .++.|.+||..+ .+.+..+.-. .....
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t---------------------~~v~~~I~v~~g~r~~~g~~P~ 140 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT---------------------LLPTADIELPDAPRFLVGTYPW 140 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---------------------CCEEEEEEETTCCCCCBSCCGG
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC---------------------CeEEEEEECCCccccccCCCCc
Confidence 3999999965655542 467899999987 3444443211 12456
Q ss_pred EEEeCCCCCCeEEEEeC--CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 234 AIDWNPITTGRLVTGDC--NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
.+.++|++. +|+++.. ++.|.++|+.+... . ..+.. ..+ ..+.|.+...|++.+.||.+.+.++.....
T Consensus 141 ~~a~spDGk-~lyVan~~~~~~VsVID~~t~~v-v---~tI~v--~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 141 MTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAF-K---RMLDV--PDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp GEEECTTSS-EEEEEECSSSCEEEEEETTTTEE-E---EEEEC--CSE--EEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred eEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcE-E---EEEEC--CCc--ceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence 799999998 7777753 68999999987422 2 12211 111 122355544788889999999999976323
Q ss_pred eeEEEecC----CCCe-EEEEEe-CCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 312 ALTSFKAH----NADV-NVISWN-RLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 312 ~~~~~~~h----~~~V-~~i~~~-p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.......+ ...+ +...|. ++| ++++ .+.+|+|.+.|+....
T Consensus 212 v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 212 PEITHTEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGD 258 (386)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSS
T ss_pred EEEeecceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCc
Confidence 22211111 1122 224664 566 5544 5568999999997653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0057 Score=53.15 Aligned_cols=159 Identities=11% Similarity=-0.037 Sum_probs=101.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
.....+.+.+.+..++++-...+.|.++++... ...............++++|.+. .|
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~---------------------~~~~~~~~~~~~P~~i~vd~~~g-~l 136 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---------------------QRRVLFDTGLVNPRGIVTDPVRG-NL 136 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------SCEEEECSSCSSEEEEEEETTTT-EE
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCC---------------------CEEEEEECCCCCccEEEEeeCCC-EE
Confidence 567899999976577777777889999998651 11111221224567999999764 55
Q ss_pred EEEeC---CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 246 VTGDC---NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 246 ~sgs~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
..+.. .+.|..+++....... ...........++++|++..++++....+.|.++|+... .....+. ....
T Consensus 137 yv~~~~~~~~~I~~~~~dg~~~~~----~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~-~~~~ 210 (267)
T 1npe_A 137 YWTDWNRDNPKIETSHMDGTNRRI----LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLE-GLQY 210 (267)
T ss_dssp EEEECCSSSCEEEEEETTSCCCEE----EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEE-CCCS
T ss_pred EEEECCCCCcEEEEEecCCCCcEE----EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEec-CCCC
Confidence 55543 3688888875321111 011123457889999987757777778899999998752 2222222 2233
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
...|+.. .+ .++++....+.|.++|..+++
T Consensus 211 P~gi~~d-~~-~lyva~~~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 211 PFAVTSY-GK-NLYYTDWKTNSVIAMDLAISK 240 (267)
T ss_dssp EEEEEEE-TT-EEEEEETTTTEEEEEETTTTE
T ss_pred ceEEEEe-CC-EEEEEECCCCeEEEEeCCCCC
Confidence 4566665 34 666666667899999987654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0015 Score=56.90 Aligned_cols=147 Identities=17% Similarity=0.248 Sum_probs=91.9
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
......-..+.+..+.+..-.++.+.+||..+ .+.+.++.. ..++++|++ ++. .|
T Consensus 85 ~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t---------------------~~~~~ti~~-~~eG~glt~--dg~-~L 139 (262)
T 3nol_A 85 KRYFGEGISDWKDKIVGLTWKNGLGFVWNIRN---------------------LRQVRSFNY-DGEGWGLTH--NDQ-YL 139 (262)
T ss_dssp TTCCEEEEEEETTEEEEEESSSSEEEEEETTT---------------------CCEEEEEEC-SSCCCCEEE--CSS-CE
T ss_pred CccceeEEEEeCCEEEEEEeeCCEEEEEECcc---------------------CcEEEEEEC-CCCceEEec--CCC-EE
Confidence 33433333333445655555788999999987 455666654 235667775 454 66
Q ss_pred EEEeCCCcEEEEecCCCCCcccCCCccccCC-CcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC-----
Q 018322 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH----- 319 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h----- 319 (358)
+.++.++.|.++|..+............+.. ..++.+.|. ++. +++....+..|.+.|.+++ ..+..+...
T Consensus 140 ~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~ 216 (262)
T 3nol_A 140 IMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETG-KVTGIIDLNGILAE 216 (262)
T ss_dssp EECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTC-BEEEEEECTTGGGG
T ss_pred EEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCC-cEEEEEECCcCccc
Confidence 6666678899999877432211001011111 345667776 565 8888888999999999985 454444321
Q ss_pred -------CCCeEEEEEeCCCCcEEEEEe
Q 018322 320 -------NADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 320 -------~~~V~~i~~~p~~~~~lasgs 340 (358)
....|.|+|+|.+.++++||-
T Consensus 217 ~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 217 AGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred cccccCcCCceEEEEEcCCCCEEEEECC
Confidence 235699999999867777763
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0005 Score=64.68 Aligned_cols=140 Identities=7% Similarity=-0.061 Sum_probs=84.6
Q ss_pred CCcEEEEEeCC----CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEe---
Q 018322 177 NPHICASWADT----GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD--- 249 (358)
Q Consensus 177 ~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs--- 249 (358)
+..++++...+ +.|.++|..+ .+.+..+..-..+ .+.++|++. +|+++.
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t---------------------~~vv~~I~vG~~P--gia~SpDgk-~lyVan~~~ 139 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGST---------------------GRILGMTDGGFLP--HPVAAEDGS-FFAQASTVF 139 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTT---------------------TEEEEEEEECSSC--EEEECTTSS-CEEEEEEEE
T ss_pred CCEEEEECCCcCCCCCeEEEEECCC---------------------CEEEEEEECCCCC--ceEECCCCC-EEEEEeccc
Confidence 33455554443 7999999987 3455555433334 799999998 666665
Q ss_pred -------CCCcEEEEecCCCCCcccCCCccc-c------CCCcEEEEEECCCCCCEEEEEE-C-CCcEEEEECCCCCCee
Q 018322 250 -------CNSCIYLWEPASDATWNVDPNPFI-G------HSASVEDLQWSPTEPDVFASCS-V-DGHIAIWDTRVGKSAL 313 (358)
Q Consensus 250 -------~dg~I~lwd~~~~~~~~~~~~~~~-~------h~~~V~~v~~sp~~~~~las~s-~-Dg~I~iwD~r~~~~~~ 313 (358)
.++.|.++|..+... . ..+. + .......+.|+|+++ .++.+. . ++.|.+.|+.+. +.+
T Consensus 140 ~~~~~G~~~~~VsviD~~t~~v-v---~~I~v~g~~r~~~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~-kvv 213 (426)
T 3c75_H 140 ERIARGKRTDYVEVFDPVTFLP-I---ADIELPDAPRFLVGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGK-TFD 213 (426)
T ss_dssp EETTEEEEEEEEEEECTTTCCE-E---EEEEETTCCCCCBSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTTT-EEE
T ss_pred cccccCCCCCEEEEEECCCCcE-E---EEEECCCccccccCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCCC-eEE
Confidence 467899999987432 1 1111 0 112345689999999 455544 3 689999999984 455
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.++..-. +....|.+...+++.+.||++.+.++
T Consensus 214 ~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~ 246 (426)
T 3c75_H 214 RMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDF 246 (426)
T ss_dssp EEEECCS----EEEEEEEETTEEEEEETTSSEEEEEC
T ss_pred EEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEEC
Confidence 5553211 12233333345555555666666555
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.012 Score=51.24 Aligned_cols=165 Identities=10% Similarity=0.082 Sum_probs=104.9
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE--cCCCCCeEEEEeCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GGHKDEGYAIDWNPI 240 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~s~~ 240 (358)
+-.+.+..+.|+|++..++|+...++.|...|... +.+..+ .+. ....+|++.+.
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g----------------------~v~~~i~l~g~-~D~EGIa~~~~ 80 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG----------------------DLIRTIPLDFV-KDLETIEYIGD 80 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC----------------------CEEEEEECSSC-SSEEEEEECST
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC----------------------CEEEEEecCCC-CChHHeEEeCC
Confidence 45578999999998767888888889998888864 222222 332 45778888877
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCC-cccCCC--cc--ccCCCcEEEEEECCCCCCEEEEEECCC-cEEEEECCCCCCeeE
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDAT-WNVDPN--PF--IGHSASVEDLQWSPTEPDVFASCSVDG-HIAIWDTRVGKSALT 314 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~-~~~~~~--~~--~~h~~~V~~v~~sp~~~~~las~s~Dg-~I~iwD~r~~~~~~~ 314 (358)
+. ++++.-.++.+.++++...+. +..... .+ .......+.|+|+|.+..++++.-.+. .|..|+-......+.
T Consensus 81 g~-~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~ 159 (255)
T 3qqz_A 81 NQ-FVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELH 159 (255)
T ss_dssp TE-EEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCE
T ss_pred CE-EEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCcee
Confidence 75 656655678899998866443 111011 11 123556899999999874666555444 455555111111122
Q ss_pred EEe-------cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 315 SFK-------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 315 ~~~-------~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.+. .+...+..|+++|...++++.......|.++|..
T Consensus 160 i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~ 203 (255)
T 3qqz_A 160 ISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV 203 (255)
T ss_dssp EEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred eecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC
Confidence 221 1334678999999876777777777778888765
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0043 Score=54.38 Aligned_cols=162 Identities=7% Similarity=-0.032 Sum_probs=102.1
Q ss_pred EEEecCCCc--eeEEEEcCCCCcEEEEEeC--CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeE
Q 018322 159 LRKVAHQGC--VNRIRAMTQNPHICASWAD--TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGY 233 (358)
Q Consensus 159 ~~~~~H~~~--V~~i~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~ 233 (358)
...++|... ...+.|++++ .++++.+. ++.|+++|+.+ .+.+..+. +......
T Consensus 12 v~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~t---------------------g~v~~~i~l~~~~fge 69 (266)
T 2iwa_A 12 LNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQT---------------------GKVENIHKMDDSYFGE 69 (266)
T ss_dssp EEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTT---------------------CCEEEEEECCTTCCEE
T ss_pred EEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCC---------------------CCEEEEEecCCCcceE
Confidence 566678754 5799999986 66666553 57999999987 34444432 1122334
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
.+++. +..+.++.-.++.+.++|..+... . ..+..-... ...+++++..++++- .++.|.++|..+. ..+
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~v-~---~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~-~v~ 139 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLSN-I---KNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTF-KLI 139 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETTTTEE-E---EEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTC-CEE
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECCCCcE-E---EEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCC-cEE
Confidence 55554 331444455688999999976322 2 222111011 123445677566665 6889999999884 344
Q ss_pred EEEec--CC---CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKA--HN---ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~--h~---~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+.. +. ..++.+.|. ++ .+++....++.|.+.|..+++
T Consensus 140 ~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 140 KKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGT 183 (266)
T ss_dssp EEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCC
T ss_pred EEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCc
Confidence 44432 11 247888998 66 777777678899999998876
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0037 Score=56.10 Aligned_cols=178 Identities=12% Similarity=-0.020 Sum_probs=97.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCc-cccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHL-NALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
.....+.+.+++ .++.++..++.|..|+..... ..+........ ....................+|++.+... .
T Consensus 19 ~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~ 93 (322)
T 2fp8_A 19 YAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWN---KAFCENSTDAEKRPLCGRTYDISYNLQNN-Q 93 (322)
T ss_dssp SCCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEEEEEESCTTCC---HHHHTTCCCGGGHHHHCCEEEEEEETTTT-E
T ss_pred CCceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEEeccccccc---ccccccccchhccccCCCCceEEEcCCCC-c
Confidence 456778888887 656677888999999876521 00000000000 00000000000000012468899987332 5
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECC-CCCCEEEEEEC-----------------CCcEEEEE
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSP-TEPDVFASCSV-----------------DGHIAIWD 305 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp-~~~~~las~s~-----------------Dg~I~iwD 305 (358)
|+.++..+.|..+|...+ ..........+ .....+++++.+ ++. ++++-.. .+.|..||
T Consensus 94 l~v~d~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGG-HATQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEEETTTEEEEECTTCE-ECEEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEEECCCCEEEEeCCCC-EEEEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEe
Confidence 666665666888887542 11100111111 123578999999 887 6666432 36788888
Q ss_pred CCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 306 TRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 306 ~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
...+. +..+.......+.|+|+|++..++++-...+.|.+|++..
T Consensus 172 ~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 172 PSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp TTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred CCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 76532 2222222234578999999833555556678999999874
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.002 Score=60.59 Aligned_cols=160 Identities=12% Similarity=0.121 Sum_probs=95.9
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE----EEcCCCCCe-EEEEeCCCCCCeEE
Q 018322 172 RAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV----KFGGHKDEG-YAIDWNPITTGRLV 246 (358)
Q Consensus 172 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~v-~~l~~s~~~~~~l~ 246 (358)
...|.+...+++.+.||++.+.++... +... .+.....++ ..+.+.+++. .++
T Consensus 223 ~~~p~g~~~~v~~~~dG~~~~V~~~~~---------------------~v~~~~~~~~~v~~~p~~~~~~~~~dg~-~~~ 280 (426)
T 3c75_H 223 HIFPASPTVFYMNCRDGSLARVDFADG---------------------ETKVTNTEVFHTEDELLINHPAFSLRSG-RLV 280 (426)
T ss_dssp EEEEEETTEEEEEETTSSEEEEECCTT---------------------CCEEEECCCCSCTTSCBCSCCEECTTTC-EEE
T ss_pred eeccCCCcEEEEEcCCCCEEEEECCCC---------------------cEEEEeeeeeccCCCceeeEeeecCCCC-EEE
Confidence 344555466777788898888888331 1110 011111111 1356788877 555
Q ss_pred EEeCCCcEEEEecCCCCCcccCCCccc-----c---CCCcEEEEEECCCCCCEEEEEEC---------CCcEEEEECCCC
Q 018322 247 TGDCNSCIYLWEPASDATWNVDPNPFI-----G---HSASVEDLQWSPTEPDVFASCSV---------DGHIAIWDTRVG 309 (358)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~-----~---h~~~V~~v~~sp~~~~~las~s~---------Dg~I~iwD~r~~ 309 (358)
..+..+.|.+.|.............+. . .......++++|++..++++... .+.|.++|+.+.
T Consensus 281 ~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~ 360 (426)
T 3c75_H 281 WPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG 360 (426)
T ss_dssp EEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred EEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC
Confidence 556678999999865321111000000 0 11122236899998856666542 357999999985
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEe-CCCCEEEEeCCCCCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKV 355 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDlr~~~~ 355 (358)
+.+.++... .....|.|+|++..++++.. .++.|.++|+.+++.
T Consensus 361 -kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 361 -ERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp -CEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred -eEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 466666422 24788999999942666666 689999999998763
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.025 Score=50.71 Aligned_cols=167 Identities=11% Similarity=-0.058 Sum_probs=101.3
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
........+.|.+.+..++.+-...+.|+.+++..... .......+........+|++.+.+.
T Consensus 27 ~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~-----------------~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------VSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCCCEEEEETTTT
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC-----------------CcccEEEEeCCCCCcCEEEEeecCC
Confidence 44566789999987657777777788999998865100 0011112222223345677765554
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-CcEEEEECCCCCCeeEEE-ecCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIAIWDTRVGKSALTSF-KAHN 320 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~iwD~r~~~~~~~~~-~~h~ 320 (358)
.++++-...+.|.+.++... ... ..+........+++++|.+..++.+.... +.|..+++... ....+ ...-
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~-~~~---~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~--~~~~~~~~~~ 163 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGV-KRK---TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--DIYSLVTENI 163 (316)
T ss_dssp EEEEEETTTTEEEEEETTSS-SEE---EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC--CEEEEECSSC
T ss_pred eEEEEECCCCEEEEEeCCCC-ceE---EEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC--CeEEEEECCC
Confidence 24455566789999988542 111 11122234678999999776566665544 78888887642 22222 2234
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
...+.|+|.+++..++++-+..+.|..+|+..
T Consensus 164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 56789999987746666666677899999864
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0026 Score=55.43 Aligned_cols=135 Identities=14% Similarity=0.163 Sum_probs=90.3
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEE
Q 018322 176 QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIY 255 (358)
Q Consensus 176 ~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~ 255 (358)
.+..+.+..-.++.+.+||..+ .+.+.++.. ..++++|++ ++. .|+.++.++.|.
T Consensus 104 ~g~~Ly~ltw~~~~v~V~D~~T---------------------l~~~~ti~~-~~eGwGLt~--Dg~-~L~vSdGs~~l~ 158 (268)
T 3nok_A 104 DGERLYQLTWTEGLLFTWSGMP---------------------PQRERTTRY-SGEGWGLCY--WNG-KLVRSDGGTMLT 158 (268)
T ss_dssp CSSCEEEEESSSCEEEEEETTT---------------------TEEEEEEEC-SSCCCCEEE--ETT-EEEEECSSSEEE
T ss_pred eCCEEEEEEccCCEEEEEECCc---------------------CcEEEEEeC-CCceeEEec--CCC-EEEEECCCCEEE
Confidence 3435666666789999999987 455555553 345677775 455 677777788999
Q ss_pred EEecCCCCCcccCCCccccCC---CcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC-------------
Q 018322 256 LWEPASDATWNVDPNPFIGHS---ASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH------------- 319 (358)
Q Consensus 256 lwd~~~~~~~~~~~~~~~~h~---~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h------------- 319 (358)
++|..+...... .....+. ..++.+.|. ++. +++....+..|.+.|.+++ ..+..+...
T Consensus 159 ~iDp~T~~v~~~--I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~ 233 (268)
T 3nok_A 159 FHEPDGFALVGA--VQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATG-TVVGVIDASALTRAVAGQVTNP 233 (268)
T ss_dssp EECTTTCCEEEE--EECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCT
T ss_pred EEcCCCCeEEEE--EEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCC-cEEEEEECCCCcccccccccCc
Confidence 999877432111 1111122 245677887 665 8888878899999999985 344444221
Q ss_pred CCCeEEEEEeCCCCcEEEEEe
Q 018322 320 NADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs 340 (358)
..-.|.|+|+|.+.++++||=
T Consensus 234 ~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 234 EAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCCEEEEEECTTTCCEEEEET
T ss_pred CCceEEEEEcCCCCEEEEeCC
Confidence 235699999998878888874
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.016 Score=52.88 Aligned_cols=162 Identities=7% Similarity=-0.101 Sum_probs=102.7
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
....+..+.|.+.+..++.+-...+.|+.+++... .....+........+|++.+.+..
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~---------------------~~~~~~~~~~~~p~glavd~~~g~ 129 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS---------------------NVEEVVSTGLESPGGLAVDWVHDK 129 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------SCEEEECSSCSCCCEEEEETTTTE
T ss_pred CCCceEEEEEeccccEEEEEeccCCceEEEecCCC---------------------CceEEEeCCCCCccEEEEecCCCe
Confidence 34557899999876577777667788988888751 111222222223456677665542
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-CcEEEEECCCCCCeeEEE-ecCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIAIWDTRVGKSALTSF-KAHNA 321 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~iwD~r~~~~~~~~~-~~h~~ 321 (358)
++++-...+.|.+.++....... .+........+|+++|.+..++.+-... +.|..+++.... ...+ ...-.
T Consensus 130 ly~~d~~~~~I~~~~~dG~~~~~----l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~~~~~~~~ 203 (349)
T 3v64_C 130 LYWTDSGTSRIEVANLDGAHRKV----LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLF 203 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSCEE----EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEESCCSSCS
T ss_pred EEEEcCCCCeEEEEcCCCCceEE----EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--cEEEEECCCC
Confidence 45555567789999885422111 1122335678999999777577776666 888888886522 2222 22334
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
..+.|+|+|.+..++++-...+.|..+|+..
T Consensus 204 ~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 204 WPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 5789999987746666666677899998764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0092 Score=55.25 Aligned_cols=163 Identities=7% Similarity=-0.100 Sum_probs=102.1
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
....+..+.|.+.+..++.+-...+.|+.+++... .....+........+|++.+.+..
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~---------------------~~~~~~~~~~~~p~glavd~~~g~ 172 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS---------------------NVEEVVSTGLESPGGLAVDWVHDK 172 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------CEEEEECSSCSCCCCEEEETTTTE
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC---------------------CcEEEEeCCCCCccEEEEEeCCCe
Confidence 34567889999866577777677788988888751 111222222223446666665542
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-CcEEEEECCCCCCeeEEEecCCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
++++-...+.|.+.++..... . ..+.........|+++|.+..++.+-... +.|..+++.... ....+...-..
T Consensus 173 lY~~d~~~~~I~~~~~dg~~~-~---~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~ 247 (386)
T 3v65_B 173 LYWTDSGTSRIEVANLDGAHR-K---VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFW 247 (386)
T ss_dssp EEEEETTTTEEEECBTTSCSC-E---EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSC
T ss_pred EEEEcCCCCeEEEEeCCCCce-E---EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCC
Confidence 445555567888888754221 1 11222335678999999877567666655 788888886522 22222233445
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+.|+|+|.+..++++-+..+.|..+|+..
T Consensus 248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 248 PNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred eeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 789999987646666666678899998764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0055 Score=62.05 Aligned_cols=221 Identities=11% Similarity=0.022 Sum_probs=116.9
Q ss_pred CceeeeChhHHHhhhcccccCcceeEEEE-eccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCC
Q 018322 47 GEELQCDPTAYNSLHAFHIGWPCLSFDIV-RDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNK 125 (358)
Q Consensus 47 ~~~l~~~~~~Y~~~~~~~~~wP~ls~~~~-~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~ 125 (358)
.+++..|+....--|.+. -.-++.|- ||+ .+++.+....+.+...|+|+++..- .
T Consensus 157 ~~~vlld~n~~a~~~~~~---~~~~~~~S~PDG-----------~~lAy~~~~~G~~~~~l~v~dl~~g----~------ 212 (751)
T 2xe4_A 157 AEEVIIDVNQVAEGKAFC---DVMEVKPAPPEH-----------DLVAFSVDMSGNEVYTIEFKRISDP----S------ 212 (751)
T ss_dssp TCEEEEEHHHHTTTCSCC---EEEEEEECTTTT-----------CEEEEEEESSSSSCEEEEEEETTCT----T------
T ss_pred CCEEEechhHhccCCCeE---EEeeeEecCCCC-----------CEEEEEEeCCCCceEEEEEEECCCC----C------
Confidence 467888886654333320 12356788 886 3666666665555567888876310 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCC----CcEEEEeCCCCccc
Q 018322 126 PSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADT----GHVQVWDLRSHLNA 201 (358)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~ 201 (358)
+. -...+. .....+.|+|++..++.+.... ..|+++++....
T Consensus 213 ----------------------~~---l~~~~~-------~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~-- 258 (751)
T 2xe4_A 213 ----------------------QT---IADKVS-------GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQ-- 258 (751)
T ss_dssp ----------------------CC---CCCCEE-------EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCG--
T ss_pred ----------------------Ee---CCcccc-------CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCc--
Confidence 00 000111 1135678999995555554332 257777776521
Q ss_pred cccccccccCCCCCCCCCCCcEEEc-CCCCCeEEEEeCCCCCCeEEEEe---CCCcEEEEecCCCC-Cc--ccCCCcccc
Q 018322 202 LAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPITTGRLVTGD---CNSCIYLWEPASDA-TW--NVDPNPFIG 274 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~l~sgs---~dg~I~lwd~~~~~-~~--~~~~~~~~~ 274 (358)
......+. .+......+.|+|++. +|+..+ ....|+++|+.++. .. . .....
T Consensus 259 -----------------~~~~lv~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~l~~~d~~~~~~~~~~~---~l~~~ 317 (751)
T 2xe4_A 259 -----------------SEDVCLYEEHNPLFSAFMYKAADTN-TLCIGSQSPETAEVHLLDLRKGNAHNTLE---IVRPR 317 (751)
T ss_dssp -----------------GGCEEEEECCCTTCEEEEEECTTSS-EEEEEEECSSCEEEEEEESSSCTTCCCEE---ESSCC
T ss_pred -----------------hhcEEEEecCCCceEEEEEECCCCC-EEEEEecCCCCceEEEEECCCCCCCceeE---EeecC
Confidence 11122332 2223456889999998 665544 23467888886632 22 1 11122
Q ss_pred CCCcEEEEEECCCCCCEEEEEECC--C--cEEEEECCCCCCeeEE-EecCCCC--eEEEEEeCCCCcEEEEEeCCCC--E
Q 018322 275 HSASVEDLQWSPTEPDVFASCSVD--G--HIAIWDTRVGKSALTS-FKAHNAD--VNVISWNRLASCLLASGSDDGT--F 345 (358)
Q Consensus 275 h~~~V~~v~~sp~~~~~las~s~D--g--~I~iwD~r~~~~~~~~-~~~h~~~--V~~i~~~p~~~~~lasgs~Dg~--i 345 (358)
......++.|+..+. +++....+ + .|..+|+..+. .... +..|... +..+.+. +..++++...+|. |
T Consensus 318 ~~~~~~s~~~~~g~~-l~~~t~~~~a~~~~L~~~d~~~~~-~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 318 EKGVRYDVQMHGTSH-LVILTNEGGAVNHKLLIAPRGQPS-DWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRI 393 (751)
T ss_dssp CTTCCEEEEEETTTE-EEEEECTTTCTTCEEEEEETTSTT-CCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEE
T ss_pred CCCceEEEeeeeCCE-EEEEeCCCCCCCcEEEEEcCCCcc-cceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEE
Confidence 344556666654443 44444443 2 56666765421 1222 3334443 4445554 4467888888885 5
Q ss_pred EEEeC
Q 018322 346 SIHDL 350 (358)
Q Consensus 346 ~iwDl 350 (358)
.++|+
T Consensus 394 ~~~dl 398 (751)
T 2xe4_A 394 WTMMA 398 (751)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 55665
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0033 Score=54.84 Aligned_cols=160 Identities=9% Similarity=-0.028 Sum_probs=99.4
Q ss_pred EEEecCCCce--eEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 159 LRKVAHQGCV--NRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 159 ~~~~~H~~~V--~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
...++|...- ..+.|.. + .++.+.+.+|.|+++|+.+ .+.+..+.....-+.+++
T Consensus 46 v~~~phd~~~ftqGL~~~~-~-~Ly~stG~~g~v~~iD~~T---------------------gkv~~~~l~~~~FgeGit 102 (268)
T 3nok_A 46 IREYPHATNAFTQGLVFHQ-G-HFFESTGHQGTLRQLSLES---------------------AQPVWMERLGNIFAEGLA 102 (268)
T ss_dssp EEEEECCTTCCEEEEEEET-T-EEEEEETTTTEEEECCSSC---------------------SSCSEEEECTTCCEEEEE
T ss_pred EEEEcCCCccccceEEEEC-C-EEEEEcCCCCEEEEEECCC---------------------CcEEeEECCCCcceeEEE
Confidence 4566776544 6788874 3 7888889999999999987 333443311111223455
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
... ..+.+..-.++.+.+||..+.... ..+.. ...-..++ +++..+++| ..++.|.++|..+. +.+.++
T Consensus 103 ~~g--~~Ly~ltw~~~~v~V~D~~Tl~~~----~ti~~-~~eGwGLt--~Dg~~L~vS-dGs~~l~~iDp~T~-~v~~~I 171 (268)
T 3nok_A 103 SDG--ERLYQLTWTEGLLFTWSGMPPQRE----RTTRY-SGEGWGLC--YWNGKLVRS-DGGTMLTFHEPDGF-ALVGAV 171 (268)
T ss_dssp ECS--SCEEEEESSSCEEEEEETTTTEEE----EEEEC-SSCCCCEE--EETTEEEEE-CSSSEEEEECTTTC-CEEEEE
T ss_pred EeC--CEEEEEEccCCEEEEEECCcCcEE----EEEeC-CCceeEEe--cCCCEEEEE-CCCCEEEEEcCCCC-eEEEEE
Confidence 543 324444556889999999774321 22221 11113344 456634554 45889999999884 444444
Q ss_pred e--cCC---CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 317 K--AHN---ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 317 ~--~h~---~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
. .+. ..+|.+.|. +| .+++..-....|.+.|.++++
T Consensus 172 ~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 172 QVKLRGQPVELINELECA-NG-VIYANIWHSSDVLEIDPATGT 212 (268)
T ss_dssp ECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTCB
T ss_pred EeCCCCcccccccccEEe-CC-EEEEEECCCCeEEEEeCCCCc
Confidence 2 222 245788888 66 677776677899999998875
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0037 Score=54.42 Aligned_cols=160 Identities=13% Similarity=0.054 Sum_probs=97.4
Q ss_pred EEEecCCCce--eEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC-CeE
Q 018322 159 LRKVAHQGCV--NRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EGY 233 (358)
Q Consensus 159 ~~~~~H~~~V--~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~ 233 (358)
.+.++|...- ..+.|+ ++ .++.+.+.+| .|+++|+.+ .+.+..+.-... -..
T Consensus 34 v~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~T---------------------gkv~~~~~l~~~~Fge 90 (262)
T 3nol_A 34 VHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIES---------------------GKTLQQIELGKRYFGE 90 (262)
T ss_dssp EEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTT---------------------CCEEEEEECCTTCCEE
T ss_pred EEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCC---------------------CcEEEEEecCCcccee
Confidence 4556787554 788888 45 6777777766 899999987 344444432221 122
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
+++. .+..+.+..-.++.+.+||..+.... ..+..- ..-..++ +++..+++|- .++.|.++|..+. ..+
T Consensus 91 Git~--~g~~ly~ltw~~~~v~v~D~~t~~~~----~ti~~~-~eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~-~v~ 159 (262)
T 3nol_A 91 GISD--WKDKIVGLTWKNGLGFVWNIRNLRQV----RSFNYD-GEGWGLT--HNDQYLIMSD-GTPVLRFLDPESL-TPV 159 (262)
T ss_dssp EEEE--ETTEEEEEESSSSEEEEEETTTCCEE----EEEECS-SCCCCEE--ECSSCEEECC-SSSEEEEECTTTC-SEE
T ss_pred EEEE--eCCEEEEEEeeCCEEEEEECccCcEE----EEEECC-CCceEEe--cCCCEEEEEC-CCCeEEEEcCCCC-eEE
Confidence 3444 34313334445889999999774332 222211 1112333 4566466664 4788999999884 444
Q ss_pred EEEec--CC---CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 314 TSFKA--HN---ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 314 ~~~~~--h~---~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.++.. .. ..+|.+.|. +| .+++..-.++.|.+.|.++++
T Consensus 160 ~~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~ 203 (262)
T 3nol_A 160 RTITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGK 203 (262)
T ss_dssp EEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCB
T ss_pred EEEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCc
Confidence 44432 22 346778887 66 677766677899999988775
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.018 Score=51.88 Aligned_cols=164 Identities=9% Similarity=0.088 Sum_probs=100.6
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC----CC--CCeEEEEe
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG----HK--DEGYAIDW 237 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~--~~v~~l~~ 237 (358)
...--.+++|.+....++++.-..|+|..|+...... ..+ .+.+ .. ..+.+|.|
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-------------------~~~-~~~~~s~~g~~~~~~sGl~~ 70 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-------------------FNV-VIDGASSNGDGEQQMSGLSL 70 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-------------------EEE-CCTTTCCSSCCSEEEEEEEE
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-------------------EEE-ecCCccccCCCcceeeEEEE
Confidence 3344557889886645666655889999999864110 000 1111 01 13479999
Q ss_pred ---CCCCCCeEEEEe-------------CCCcEEEEecC---CCCC-cccCCCccc-c-------CCCcEEEEEECCCCC
Q 018322 238 ---NPITTGRLVTGD-------------CNSCIYLWEPA---SDAT-WNVDPNPFI-G-------HSASVEDLQWSPTEP 289 (358)
Q Consensus 238 ---s~~~~~~l~sgs-------------~dg~I~lwd~~---~~~~-~~~~~~~~~-~-------h~~~V~~v~~sp~~~ 289 (358)
.|.+. ++++.. .+..|..+|+. ++.. +...+.... + -...+++++..++|+
T Consensus 71 ~~~D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn 149 (334)
T 2p9w_A 71 LTHDNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN 149 (334)
T ss_dssp SSSSSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC
T ss_pred eccCCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC
Confidence 57754 555433 25779999997 4322 221111111 1 113589999999998
Q ss_pred CEEEEEECC-CcEEEEECCCCCCeeEEEe------cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 290 DVFASCSVD-GHIAIWDTRVGKSALTSFK------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 290 ~~las~s~D-g~I~iwD~r~~~~~~~~~~------~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
..++++.- +.|...+... . .+..+. ......+.|+++|++ .+|+.....|.|..+|+++
T Consensus 150 -aYVt~s~~~~~I~rV~pdG-~-~~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 150 -SYVAFALGMPAIARVSADG-K-TVSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp -EEEEEEESSCEEEEECTTS-C-CEEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSS
T ss_pred -EEEeCCCCCCeEEEEeCCC-C-EEeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCC
Confidence 88888888 8877776653 2 222221 112236799999999 6666655599999999884
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0079 Score=53.52 Aligned_cols=152 Identities=11% Similarity=-0.004 Sum_probs=91.3
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
...+.++.+.+++ .+.+ ++ +.|..|| .. ...+..+......+.++...+++ .
T Consensus 176 ~~~~~~~~~d~~g-~l~v-~t--~~l~~~d-~~---------------------g~~~~~~~~~~~~~~~~~~~~~g--~ 227 (330)
T 3hxj_A 176 DAITSAASIGKDG-TIYF-GS--DKVYAIN-PD---------------------GTEKWNFYAGYWTVTRPAISEDG--T 227 (330)
T ss_dssp SCCCSCCEECTTC-CEEE-ES--SSEEEEC-TT---------------------SCEEEEECCSSCCCSCCEECTTS--C
T ss_pred CCceeeeEEcCCC-EEEE-Ee--CEEEEEC-CC---------------------CcEEEEEccCCcceeceEECCCC--e
Confidence 4456666666666 3443 34 7888888 33 23333343344567777777765 5
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeE
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (358)
|..++.++.|..++... .. . ..+......+..+.+.+++. +..++.+|.|..+|. ++ ..+..+......+.
T Consensus 228 l~v~t~~~gl~~~~~~g-~~-~---~~~~~~~~~~~~~~~~~~g~--l~v~t~~ggl~~~d~-~g-~~~~~~~~~~~~~~ 298 (330)
T 3hxj_A 228 IYVTSLDGHLYAINPDG-TE-K---WRFKTGKRIESSPVIGNTDT--IYFGSYDGHLYAINP-DG-TEKWNFETGSWIIA 298 (330)
T ss_dssp EEEEETTTEEEEECTTS-CE-E---EEEECSSCCCSCCEECTTSC--EEEECTTCEEEEECT-TS-CEEEEEECSSCCCS
T ss_pred EEEEcCCCeEEEECCCC-CE-e---EEeeCCCCccccceEcCCCe--EEEecCCCCEEEECC-CC-cEEEEEEcCCcccc
Confidence 67777788888887532 21 1 12222223334455565664 667888889999995 43 44555555556677
Q ss_pred EEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 325 VISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
++...+++ . |..|+.+|.+++......+.
T Consensus 299 ~~~~d~~g-~-l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 299 TPVIDENG-T-IYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp CCEECTTC-C-EEEECTTSCEEEEEC-----
T ss_pred ceEEcCCC-E-EEEEcCCCeEEEEecccccc
Confidence 77887777 4 55578899999988765443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0069 Score=57.05 Aligned_cols=156 Identities=8% Similarity=0.075 Sum_probs=92.3
Q ss_pred ceeEEEEcCC-CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 167 CVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 167 ~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
....|+++|. +..++++-.. +.|+.+|+.. ..+..+.........|+|++++. +|
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~----------------------~~v~~~~~~~~~P~~ia~d~~G~-~l 193 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEK----------------------EYVSTVYSGLSKVRTICWTHEAD-SM 193 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTT----------------------TEEEEEECCCSCEEEEEECTTSS-EE
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCC----------------------CEEEEEecCCCCcceEEEeCCCC-EE
Confidence 3466778873 3244444333 7788888765 22233333445688999999987 66
Q ss_pred EEEeCC-C----cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe-cC
Q 018322 246 VTGDCN-S----CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK-AH 319 (358)
Q Consensus 246 ~sgs~d-g----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~-~h 319 (358)
+.++.. + .+.+.+. . +.+.. ...+. .......++++|....++++-...+.|..++...+. ...... ..
T Consensus 194 yvad~~~~~~~~~v~~~~~-~-g~~~~-~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~-~~~~~~~~~ 268 (430)
T 3tc9_A 194 IITNDQNNNDRPNNYILTR-E-SGFKV-ITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE-TTPLFTIQD 268 (430)
T ss_dssp EEEECCSCTTSEEEEEEEG-G-GTSCS-EEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE-EEEEEECSS
T ss_pred EEEeCCCCcccceEEEEeC-C-Cceee-eeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-EEEEEEcCC
Confidence 666542 2 2333333 2 22110 01111 123456788999444388777788999999987632 211111 12
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
....+.|+|+|++..++++-...+.|..++..
T Consensus 269 ~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 269 SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 23568899999993366666677889998764
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0065 Score=61.52 Aligned_cols=159 Identities=9% Similarity=0.055 Sum_probs=90.5
Q ss_pred ceeEEEEc-CCCCcEEEEEeCCC----cEEEEeCCCC-ccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 167 CVNRIRAM-TQNPHICASWADTG----HVQVWDLRSH-LNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 167 ~V~~i~~~-p~~~~~lat~s~dg----~V~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
.+...+|+ |++..++.+.+..| +|+++|+... .. + ... +.. ...++.|+|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~-l----------------~~~---~~~---~~~~~~WspD 231 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT-I----------------ADK---VSG---TNGEIVWGPD 231 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC-C----------------CCC---EEE---ECSCCEECSS
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe-C----------------Ccc---ccC---ceeeEEEecC
Confidence 67889999 99954444444443 4999999762 10 0 011 111 1246889999
Q ss_pred CCCeEEEEeCC-----CcEEEEecCCCCCcccCCCccc-cCCCcEEEEEECCCCCCEEEEEEC--CCcEEEEECCCCCCe
Q 018322 241 TTGRLVTGDCN-----SCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSV--DGHIAIWDTRVGKSA 312 (358)
Q Consensus 241 ~~~~l~sgs~d-----g~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~--Dg~I~iwD~r~~~~~ 312 (358)
+. .|+....+ ..|+++++.++.... ...+. ........+.|+|+++.++++... ...|.++|+..+...
T Consensus 232 g~-~l~y~~~d~~~~~~~v~~~~lgt~~~~~--~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~ 308 (751)
T 2xe4_A 232 HT-SLFYVTKDETLRENKVWRHVMGKLQSED--VCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH 308 (751)
T ss_dssp TT-EEEEEEECTTCCEEEEEEEETTSCGGGC--EEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred CC-EEEEEEECCCCCCCEEEEEECCCCchhc--EEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence 98 55444443 257778875532111 01111 222346688999999955555433 346888898764222
Q ss_pred e--EEE-ecCCCCeEEEEEeCCCCcEEEEEeCC----CCEEEEeCCC
Q 018322 313 L--TSF-KAHNADVNVISWNRLASCLLASGSDD----GTFSIHDLRL 352 (358)
Q Consensus 313 ~--~~~-~~h~~~V~~i~~~p~~~~~lasgs~D----g~i~iwDlr~ 352 (358)
. ..+ ........++.|+..+ .+++....+ ..|..+|+.+
T Consensus 309 ~~~~~l~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 309 NTLEIVRPREKGVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CCEEESSCCCTTCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTS
T ss_pred ceeEEeecCCCCceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCC
Confidence 2 333 2334455667766555 666665554 3566677754
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.011 Score=52.58 Aligned_cols=148 Identities=12% Similarity=0.045 Sum_probs=89.1
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
+...+.++...+++ . +..++.++.|..||... ..+..+......+.++...+++
T Consensus 135 ~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~g----------------------~~~~~~~~~~~~~~~~~~d~~g-- 188 (330)
T 3hxj_A 135 KKAIYATPIVSEDG-T-IYVGSNDNYLYAINPDG----------------------TEKWRFKTNDAITSAASIGKDG-- 188 (330)
T ss_dssp SSCCCSCCEECTTS-C-EEEECTTSEEEEECTTS----------------------CEEEEEECSSCCCSCCEECTTC--
T ss_pred CCceeeeeEEcCCC-E-EEEEcCCCEEEEECCCC----------------------CEeEEEecCCCceeeeEEcCCC--
Confidence 44455666666666 3 55567778899998762 1222232333445566666655
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
.|..|+ +.|..+| .++.. . ..+......+.++...+++. +..++.++.|..+|. .+ ..+..+......+
T Consensus 189 ~l~v~t--~~l~~~d-~~g~~-~---~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~-~g-~~~~~~~~~~~~~ 257 (330)
T 3hxj_A 189 TIYFGS--DKVYAIN-PDGTE-K---WNFYAGYWTVTRPAISEDGT--IYVTSLDGHLYAINP-DG-TEKWRFKTGKRIE 257 (330)
T ss_dssp CEEEES--SSEEEEC-TTSCE-E---EEECCSSCCCSCCEECTTSC--EEEEETTTEEEEECT-TS-CEEEEEECSSCCC
T ss_pred EEEEEe--CEEEEEC-CCCcE-E---EEEccCCcceeceEECCCCe--EEEEcCCCeEEEECC-CC-CEeEEeeCCCCcc
Confidence 455555 8899999 44222 1 12222335577788888875 555677888888874 32 3455555444445
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
..+.+.+++ .|..++.+|.|..+|.
T Consensus 258 ~~~~~~~~g--~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 258 SSPVIGNTD--TIYFGSYDGHLYAINP 282 (330)
T ss_dssp SCCEECTTS--CEEEECTTCEEEEECT
T ss_pred ccceEcCCC--eEEEecCCCCEEEECC
Confidence 556666555 4556777888988885
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.011 Score=57.51 Aligned_cols=74 Identities=8% Similarity=0.005 Sum_probs=57.0
Q ss_pred cEEEEEECCCCCCEEEEEECCCcEEEEECCCCC----------CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEE
Q 018322 278 SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK----------SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSI 347 (358)
Q Consensus 278 ~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~----------~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~i 347 (358)
...++.++|+|.++++++..+.+|.++|+.+.. ..+.....-......++|+|+| +..++.-.|++|.+
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~k 356 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVK 356 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEE
Confidence 456789999999888888889999999998531 0122222234567889999999 88888889999999
Q ss_pred EeCCC
Q 018322 348 HDLRL 352 (358)
Q Consensus 348 wDlr~ 352 (358)
||+.+
T Consensus 357 wdi~~ 361 (595)
T 1fwx_A 357 WNIED 361 (595)
T ss_dssp EEHHH
T ss_pred EEhhH
Confidence 99865
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.012 Score=50.61 Aligned_cols=161 Identities=17% Similarity=0.088 Sum_probs=98.3
Q ss_pred EEEEecCCCc--eeEEEEcCCCCcEEEEEeCCC--cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCC-Ce
Q 018322 158 QLRKVAHQGC--VNRIRAMTQNPHICASWADTG--HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKD-EG 232 (358)
Q Consensus 158 ~~~~~~H~~~--V~~i~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v 232 (358)
..+..+|... ...+.|.+ + .++.+.+..| .|+.+|+.+ .+.+..+.-... -.
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~t---------------------gkv~~~~~l~~~~fg 67 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLET---------------------GRILQRAEVPPPYFG 67 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTT---------------------CCEEEEEECCTTCCE
T ss_pred EEEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCC---------------------CCEEEEEeCCCCcce
Confidence 3556688754 55899987 4 6777777764 899999987 344444432221 22
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (358)
.+++.. +..+++..-.++.+.+||..+.... ..+..- ..-..++ +++..+++|- .++.|.++|..+. ..
T Consensus 68 eGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~----~ti~~~-~~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~-~~ 136 (243)
T 3mbr_X 68 AGIVAW--RDRLIQLTWRNHEGFVYDLATLTPR----ARFRYP-GEGWALT--SDDSHLYMSD-GTAVIRKLDPDTL-QQ 136 (243)
T ss_dssp EEEEEE--TTEEEEEESSSSEEEEEETTTTEEE----EEEECS-SCCCEEE--ECSSCEEEEC-SSSEEEEECTTTC-CE
T ss_pred eEEEEe--CCEEEEEEeeCCEEEEEECCcCcEE----EEEeCC-CCceEEe--eCCCEEEEEC-CCCeEEEEeCCCC-eE
Confidence 334443 3314444456889999999774321 222211 1123444 4555466665 4889999999884 34
Q ss_pred eEEEec--CC---CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 313 LTSFKA--HN---ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 313 ~~~~~~--h~---~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+.++.. +. ..+|.+.|. ++ .+++..-.+..|.+.|.++++
T Consensus 137 ~~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 137 VGSIKVTAGGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASGK 181 (243)
T ss_dssp EEEEECEETTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCB
T ss_pred EEEEEEccCCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCCC
Confidence 444432 22 346778877 56 666666567789999988875
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0048 Score=61.71 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=40.2
Q ss_pred CcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 299 GHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 299 g~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
|.|..||+.++ +.+.++. +...++...+...+ .+++.|+.||.+++||+++++.
T Consensus 457 g~l~A~D~~tG-~~~W~~~-~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 457 GRLLAWDPVAQ-KAAWSVE-HVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp EEEEEEETTTT-EEEEEEE-ESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred cEEEEEeCCCC-cEEeecC-CCCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCce
Confidence 78999999985 4555554 33345555566666 6788889999999999998764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.01 Score=59.49 Aligned_cols=55 Identities=18% Similarity=0.117 Sum_probs=40.6
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+|.|+.||+.++ +.+.++..+. .+....+...+ .+++.|+.||.|+.||.++++.
T Consensus 454 ~g~l~A~D~~tG-~~~W~~~~~~-~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 454 SGKLIAWDPVKQ-QAAWEVPYVT-IFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp EEEEEEEETTTT-EEEEEEEESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred ceeEEEEECCCC-CeEeEccCCC-CccCccceECC-CEEEEECCCCcEEEEECCCCcc
Confidence 378999999986 4566655443 33334555566 6889999999999999998864
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.13 E-value=0.11 Score=48.15 Aligned_cols=170 Identities=10% Similarity=-0.070 Sum_probs=103.4
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
+.....+..|.|.+.+..++.+-...+.|+.+++..... .......+........+|++.+.+
T Consensus 108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~-----------------~~~~~~~~~~~~~~p~glavD~~~ 170 (400)
T 3p5b_L 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------VSSYDTVISRDIQAPDGLAVDWIH 170 (400)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CCCEEEECSSCSCEEEEEEETTT
T ss_pred ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC-----------------CCcceEEEeCCCCCcccEEEEecC
Confidence 445678889999987656777766778888888764110 011222233233456677777655
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-CCcEEEEECCCCCCeeEEEecCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
..++++-...+.|.+.++..... . ..+.........|+++|.+..++.+-.. .+.|...++... .....+...-
T Consensus 171 ~~lY~~d~~~~~I~~~~~~g~~~-~---~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~~l 245 (400)
T 3p5b_L 171 SNIYWTDSVLGTVSVADTKGVKR-K---TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENI 245 (400)
T ss_dssp TEEEEEETTTTEEEEECTTTCSE-E---EEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECSSC
T ss_pred CceEEEECCCCeEEEEeCCCCce-E---EEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEECCC
Confidence 42555555678899988864221 1 1122233457899999977646665533 478888888652 2222223333
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
...+.|++.+.+..++++=...+.|..+|+...
T Consensus 246 ~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 246 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 567999999877456565556778999888643
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0015 Score=60.27 Aligned_cols=138 Identities=8% Similarity=-0.126 Sum_probs=85.9
Q ss_pred cEEEEEeCCC----cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEe-----
Q 018322 179 HICASWADTG----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD----- 249 (358)
Q Consensus 179 ~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs----- 249 (358)
.++++-..++ +|.++|..+ .+.+..+..-..+ .+.++|++. +++++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t---------------------~~v~~~i~vG~~P--~i~~spDg~-~lyVan~~~~r 88 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGC---------------------GVTLGHSLGAFLS--LAVAGHSGS-DFALASTSFAR 88 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTT---------------------TEEEEEEEECTTC--EEEECTTSS-CEEEEEEEETT
T ss_pred eEEEECCccCCccceEEEEECCC---------------------CeEEEEEeCCCCC--ceEECCCCC-EEEEEcccccc
Confidence 3445444444 788999877 4555555443345 799999998 777765
Q ss_pred -----CCCcEEEEecCCCCCcccCCCccccC-------CCcEEEEEECCCCCCEEEEEEC-CCcEEE--EECCCCCCeeE
Q 018322 250 -----CNSCIYLWEPASDATWNVDPNPFIGH-------SASVEDLQWSPTEPDVFASCSV-DGHIAI--WDTRVGKSALT 314 (358)
Q Consensus 250 -----~dg~I~lwd~~~~~~~~~~~~~~~~h-------~~~V~~v~~sp~~~~~las~s~-Dg~I~i--wD~r~~~~~~~ 314 (358)
.++.|.+||+.+... . ..+... ......++++|+++.++++... ...|.+ +|+.+ +.
T Consensus 89 ~~~G~~~~~VsviD~~T~~v-v---~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~ 160 (368)
T 1mda_H 89 SAKGKRTDYVEVFDPVTFLP-I---ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQ 160 (368)
T ss_dssp TTSSSEEEEEEEECTTTCCE-E---EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EE
T ss_pred cccCCCCCEEEEEECCCCCE-E---EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ce
Confidence 368999999987432 2 222111 1234568999999955554433 467888 88876 33
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+..- .. +.+.|++...+++.+.||.+.+.|+.+
T Consensus 161 ~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 161 LTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp EEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred EEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 33211 11 123455556666777788888888765
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.14 Score=46.50 Aligned_cols=164 Identities=13% Similarity=0.123 Sum_probs=97.7
Q ss_pred CceeEEEEcCCC----C---cEEEEEeC--CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-------CCC
Q 018322 166 GCVNRIRAMTQN----P---HICASWAD--TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-------GHK 229 (358)
Q Consensus 166 ~~V~~i~~~p~~----~---~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~ 229 (358)
+.+|.+..-|.- . ..+|+... +.+|++|++.... .++..+. .-.
T Consensus 68 g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--------------------~~l~~i~~~~~pv~t~~ 127 (355)
T 3amr_A 68 GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--------------------GTLQSMTDPDHPIATAI 127 (355)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT--------------------CCEEECSCTTSCEECCC
T ss_pred CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC--------------------CceeeccccccCcCCCC
Confidence 678888777631 0 12444444 5789999885321 1122221 111
Q ss_pred CCeEEEEe--CCCC-CCeEEEEeCCCcEEEEecCCC--C-CcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 230 DEGYAIDW--NPIT-TGRLVTGDCNSCIYLWEPASD--A-TWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 230 ~~v~~l~~--s~~~-~~~l~sgs~dg~I~lwd~~~~--~-~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
..++.|+. ++.. ..++++...+|.+..|++... + ......+.|. -.+.+..+...+... .|..+-.+.-|..
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g-~Lyv~eEd~GIw~ 205 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYG-RLYIAEEDEAIWK 205 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTT-EEEEEETTTEEEE
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCC-eEEEecccceEEE
Confidence 46777777 7753 326778888899999998532 1 1111123333 246788888888777 7888888877777
Q ss_pred EECCCC----CCeeEEEe-cC-CCCeEEEEEe--CCCC-cEEEEEeCCCCEEEEeCC
Q 018322 304 WDTRVG----KSALTSFK-AH-NADVNVISWN--RLAS-CLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 304 wD~r~~----~~~~~~~~-~h-~~~V~~i~~~--p~~~-~~lasgs~Dg~i~iwDlr 351 (358)
++.+.. ...+..+. .+ ...+..|++- +++. .+|+|+-.+.++.+||.+
T Consensus 206 ~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 206 FSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 775421 11332221 22 2478888884 4443 466666567899999986
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.022 Score=50.91 Aligned_cols=114 Identities=10% Similarity=-0.011 Sum_probs=70.4
Q ss_pred eEEEEeCCCCCCeEEEE-eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC----------CCc
Q 018322 232 GYAIDWNPITTGRLVTG-DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV----------DGH 300 (358)
Q Consensus 232 v~~l~~s~~~~~~l~sg-s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~----------Dg~ 300 (358)
...|+|++++. +|+.+ ...+.|..|++....... ...+....+ ...+++.+++. ++++... .+.
T Consensus 187 p~gia~~~dg~-~lyv~d~~~~~I~~~~~~~~~~~~--~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~ 261 (322)
T 2fp8_A 187 PGGAEVSADSS-FVLVAEFLSHQIVKYWLEGPKKGT--AEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPK 261 (322)
T ss_dssp CCEEEECTTSS-EEEEEEGGGTEEEEEESSSTTTTC--EEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEE
T ss_pred CcceEECCCCC-EEEEEeCCCCeEEEEECCCCcCCc--cceEEeCCC-CCCeEECCCCC-EEEEecCcccccccCCCccE
Confidence 45799999987 66555 456899999986421100 011111123 77899999997 7776654 467
Q ss_pred EEEEECCCCCCeeEEEecC----CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 301 IAIWDTRVGKSALTSFKAH----NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 301 I~iwD~r~~~~~~~~~~~h----~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|..+|.. + ..+..+... -..+..+++. ++ .++++....+.|.++++....
T Consensus 262 v~~~d~~-G-~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 262 GIKFDEF-G-NILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEEECTT-S-CEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC----
T ss_pred EEEECCC-C-CEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEeccccc
Confidence 8888864 2 344445332 2346667773 55 677777778899999987544
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.028 Score=53.66 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=97.0
Q ss_pred ceeEEEEcCC-CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC----CCCCeEEEEe----
Q 018322 167 CVNRIRAMTQ-NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG----HKDEGYAIDW---- 237 (358)
Q Consensus 167 ~V~~i~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~---- 237 (358)
....|+|.|. +.+++++....+.|++.|+.. ..+..+.. .......|+|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~----------------------~~v~~l~~~~~~~~~~p~~ia~~~~~ 197 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN----------------------RMLSSPLNINTIPTNRIRSIAFNKKI 197 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT----------------------TEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC----------------------CEEEEEEccCccccCCCcEEEEeecc
Confidence 3568889984 446777766667788888776 22222221 1235789999
Q ss_pred ---CCCCCCeEEEEeCCC-------cEEEEecCCCCCccc-C-CCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 238 ---NPITTGRLVTGDCNS-------CIYLWEPASDATWNV-D-PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 238 ---s~~~~~~l~sgs~dg-------~I~lwd~~~~~~~~~-~-~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
++++. .|++++..+ .|.+.+....+.+.. . ...+.. ......++.+|.+..++++....+.|..+|
T Consensus 198 ~~~d~~G~-~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 198 EGYADEAE-YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp TTTBCTTC-EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred cccCCCCC-EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 99987 666666544 266665333223220 0 011111 124467789997666888888899999999
Q ss_pred CC-------CCCC-----e-----eEE-E-ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 306 TR-------VGKS-----A-----LTS-F-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 306 ~r-------~~~~-----~-----~~~-~-~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+. ++.. + ... + .........|+|+|++..++++-.....|+.++.
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 87 4321 0 111 1 1223446889999999335555566778888654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.095 Score=53.16 Aligned_cols=169 Identities=10% Similarity=-0.075 Sum_probs=98.7
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.....+..|.|.+....++.+-...+.|+.+++..... .......+........+|++.+.+.
T Consensus 421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~-----------------~~~~~~vi~~~l~~P~GLAvD~~~~ 483 (791)
T 3m0c_C 421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------VSSYDTVISRDIQAPDGLAVDWIHS 483 (791)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCCCEEEEETTTT
T ss_pred cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCC-----------------CcceeEEEecCCCCcceeeeeecCC
Confidence 34456677888775546666666667788777764110 0112223332233445666665654
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-CcEEEEECCCCCCeeEEEecCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
.++++-...+.|.+.++..... . ..+.........|+++|.+..++.+-... +.|...++... .....+...-.
T Consensus 484 ~LY~tD~~~~~I~v~~ldG~~~-~---~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~ 558 (791)
T 3m0c_C 484 NIYWTDSVLGTVSVADTKGVKR-K---TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQ 558 (791)
T ss_dssp EEEEEETTTTEEEEEETTSSSE-E---EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCS
T ss_pred cEEEEecCCCeEEEEeCCCCeE-E---EEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCC
Confidence 3555656678999999864221 1 11222334588999999866466665443 78888888642 22222333345
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
..+.|++.+.+..++++=...+.|..+++...
T Consensus 559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 68999999877455555555678888887543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.11 Score=45.86 Aligned_cols=163 Identities=9% Similarity=0.031 Sum_probs=94.7
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
...++.......+.|.+++ .++++-...+.|+.||.... ....+. -.....+|++.
T Consensus 25 ~~~~p~~~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~----------------------~~~~~~-~~~~p~gia~~ 80 (306)
T 2p4o_A 25 ITSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDGN----------------------QQIHAT-VEGKVSGLAFT 80 (306)
T ss_dssp EEEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTCC----------------------EEEEEE-CSSEEEEEEEC
T ss_pred eEeCCCCCCcceEEECCCC-CEEEEeCCCCeEEEECCCCc----------------------eEEEEe-CCCCceeEEEc
Confidence 3444444678899999988 67777778899999987651 111111 12367899999
Q ss_pred CCCCCeEEEEeCC-C-cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 239 PITTGRLVTGDCN-S-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 239 ~~~~~~l~sgs~d-g-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
+++. ++++.... + .|..++..++ .... .... ........++..+.+. ++++....+.|..+|...+...+...
T Consensus 81 ~dG~-l~vad~~~~~~~v~~~d~~~g-~~~~-~~~~-~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~ 155 (306)
T 2p4o_A 81 SNGD-LVATGWNADSIPVVSLVKSDG-TVET-LLTL-PDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLE 155 (306)
T ss_dssp TTSC-EEEEEECTTSCEEEEEECTTS-CEEE-EEEC-TTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCc-EEEEeccCCcceEEEEcCCCC-eEEE-EEeC-CCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEE
Confidence 9986 55554332 2 4666665542 2210 0011 1122334555555443 56655568899999986531112111
Q ss_pred e---------cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 317 K---------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 317 ~---------~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
. ..-...+.| ++++..++++-...+.|..||+..
T Consensus 156 ~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 156 HPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp CGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred CCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence 0 111235666 777745666666788999999864
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.90 E-value=0.071 Score=47.83 Aligned_cols=162 Identities=7% Similarity=-0.119 Sum_probs=98.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
..+..+.|.+.+..++.+-...+.|+.+++... ......+........+|++.+.+..++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~--------------------~~~~~~~~~~l~~p~glavd~~~g~ly 94 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT--------------------ESVQNVVVSGLLSPDGLACDWLGEKLY 94 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSS--------------------SCCCEEEEECCSCCCEEEEETTTTEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCC--------------------CceEEEEcCCCCCccEEEEEcCCCeEE
Confidence 356788999866577777777788988888762 111112222222344666665444255
Q ss_pred EEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE-CCCcEEEEECCCCCCeeEEEecCCCCeE
Q 018322 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRVGKSALTSFKAHNADVN 324 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (358)
++-...+.|.++++....... .+.........|++.|.+..++.+-. ..+.|...++... .....+...-...+
T Consensus 95 ~~d~~~~~I~~~~~dG~~~~~----l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~l~~Pn 169 (318)
T 3sov_A 95 WTDSETNRIEVSNLDGSLRKV----LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPN 169 (318)
T ss_dssp EEETTTTEEEEEETTSCSCEE----EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEE
T ss_pred EEECCCCEEEEEECCCCcEEE----EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECCCCCcc
Confidence 555567899999985422111 11123456789999997664555543 3578888887642 22222222334568
Q ss_pred EEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 325 VISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.|+|++++..++.+=+..+.|..+|+..
T Consensus 170 glavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 170 GLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 9999997646666666678899998863
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.045 Score=49.97 Aligned_cols=170 Identities=12% Similarity=0.040 Sum_probs=96.0
Q ss_pred EEEecC-CCceeEEEEcCCCCcEEEEE------------eCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE
Q 018322 159 LRKVAH-QGCVNRIRAMTQNPHICASW------------ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF 225 (358)
Q Consensus 159 ~~~~~H-~~~V~~i~~~p~~~~~lat~------------s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
++.+.. ....-.|.+.|++ .+++++ ..+|.|.++|........ ..+ .+
T Consensus 42 C~~i~~~~~G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-----------------~~l-~~ 102 (355)
T 3sre_A 42 CNLVKGIDNGSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-----------------SEL-EI 102 (355)
T ss_dssp EEECTTCCSCCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCCE-----------------EEC-EE
T ss_pred CEEeCCCCCCcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-----------------EEE-Ec
Confidence 444443 3345667778876 444443 168999999987421110 111 12
Q ss_pred cC-----CCCCeEEEEeCC--CCCCeEEEEeC---CCcEEEEecCCCCCcccCCCccccC-CCcEEEEEECCCCCCEEEE
Q 018322 226 GG-----HKDEGYAIDWNP--ITTGRLVTGDC---NSCIYLWEPASDATWNVDPNPFIGH-SASVEDLQWSPTEPDVFAS 294 (358)
Q Consensus 226 ~~-----h~~~v~~l~~s~--~~~~~l~sgs~---dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~v~~sp~~~~~las 294 (358)
.+ ..-....|++.+ ++..+|+++.. +.+|.+|++...+........+.+. -...+++.+.+++. ++++
T Consensus 103 ~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt 181 (355)
T 3sre_A 103 IGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYAT 181 (355)
T ss_dssp ECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEE
T ss_pred cCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEec
Confidence 22 122556777655 34335555532 4678888886543322222333332 24689999999987 6555
Q ss_pred EEC-----------------CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 295 CSV-----------------DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 295 ~s~-----------------Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
... .|.|.-+|.. . +..+...-..-|.|+|+|++..++++-+..+.|..|++..
T Consensus 182 ~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 182 NDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp ESCSCSSHHHHHHHHHTTCCCEEEEEECTT---C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCcEeCCcccccchhhccCCccEEEEEECC---e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 431 2445555542 1 2223223345799999999955566666678999999863
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0053 Score=61.37 Aligned_cols=93 Identities=11% Similarity=0.139 Sum_probs=57.9
Q ss_pred CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC-CCCeEEEEEeC
Q 018322 252 SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH-NADVNVISWNR 330 (358)
Q Consensus 252 g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h-~~~V~~i~~~p 330 (358)
|.|..||+.++.. . ..+. +...+....+...+. +++.++.||.+++||.+++ +.+.++... .....-+.|..
T Consensus 457 g~l~A~D~~tG~~-~---W~~~-~~~~~~~g~~~~~g~-~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~~~~~~p~~y~~ 529 (677)
T 1kb0_A 457 GRLLAWDPVAQKA-A---WSVE-HVSPWNGGTLTTAGN-VVFQGTADGRLVAYHAATG-EKLWEAPTGTGVVAAPSTYMV 529 (677)
T ss_dssp EEEEEEETTTTEE-E---EEEE-ESSSCCCCEEEETTT-EEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEE
T ss_pred cEEEEEeCCCCcE-E---eecC-CCCCCcCcceEeCCC-EEEEECCCCcEEEEECCCC-ceeeeeeCCCCcccCCEEEEe
Confidence 6789999877432 1 1111 223334444555666 7777899999999999996 467777533 33334566777
Q ss_pred CCCcEEEEEeC----------------CCCEEEEeCC
Q 018322 331 LASCLLASGSD----------------DGTFSIHDLR 351 (358)
Q Consensus 331 ~~~~~lasgs~----------------Dg~i~iwDlr 351 (358)
+|..++++.+. .+.+.+|.+.
T Consensus 530 ~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 530 DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 88455555333 3567777765
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0077 Score=58.54 Aligned_cols=121 Identities=10% Similarity=0.031 Sum_probs=77.4
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc----cc----CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEE
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW----NV----DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIA 302 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~----~~----~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~ 302 (358)
...++.++|+|...++++-.+.+|.++|+.+.... .. ..... .-......++|+|+| +.+.+...|+.|.
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSLFLDSQVV 355 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-EEEEEETTTTEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCC-eEEEEEecCCcEE
Confidence 56689999999844555557889999999752100 00 00011 123457789999999 5888999999999
Q ss_pred EEECCCC---------CCeeEEEecCCCCe-E----EEEEeCCCCcEEEEEeC---CCCE----------EEEeCCCCC
Q 018322 303 IWDTRVG---------KSALTSFKAHNADV-N----VISWNRLASCLLASGSD---DGTF----------SIHDLRLLK 354 (358)
Q Consensus 303 iwD~r~~---------~~~~~~~~~h~~~V-~----~i~~~p~~~~~lasgs~---Dg~i----------~iwDlr~~~ 354 (358)
+||+... ...+.++..|-.+- + .+.++|+| .+|+++.. |+.+ .++|+...+
T Consensus 356 kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG-k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 356 KWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN-DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS-SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC-CEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 9998651 23555665554421 1 12457999 66666542 3321 788885443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.22 Score=45.85 Aligned_cols=159 Identities=9% Similarity=-0.087 Sum_probs=97.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
.....+++.+.+..++.+-...+.|.+.++.. ......+........+|++.|.+. .|
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg---------------------~~~~~l~~~~l~~P~giavdp~~g-~l 216 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG---------------------AHRKVLLWQSLEKPRAIALHPMEG-TI 216 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTS---------------------CSCEEEECSSCSCEEEEEEETTTT-EE
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC---------------------CceEEeecCCCCCCcEEEEEcCCC-eE
Confidence 34567788776556777766677787777654 112222333334678899998765 55
Q ss_pred EEEe-CC-CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 246 VTGD-CN-SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 246 ~sgs-~d-g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
+... .. +.|..+++....... .....-...+.|+|+|.+..++++-+..+.|..+|+... .....+.......
T Consensus 217 y~td~~~~~~I~r~~~dG~~~~~----~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~P 291 (386)
T 3v65_B 217 YWTDWGNTPRIEASSMDGSGRRI----IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS-HRKAVISQGLPHP 291 (386)
T ss_dssp EEEECSSSCEEEEEETTSCSCEE----EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC-SCEEEECSSCSSE
T ss_pred EEeccCCCCEEEEEeCCCCCcEE----EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC-eeEEEEECCCCCc
Confidence 5444 34 678888775422111 111223457889999877757777777889999998653 2222233334456
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
..|++. .+ .++.+-...+.|..+|..++
T Consensus 292 ~giav~-~~-~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 292 FAITVF-ED-SLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EEEEEE-TT-EEEEEETTTTEEEEEETTTC
T ss_pred eEEEEE-CC-EEEEeeCCCCeEEEEECCCC
Confidence 777773 34 67777777788888885443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.24 Score=44.93 Aligned_cols=160 Identities=9% Similarity=-0.108 Sum_probs=99.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
.....+++.+.+..++.+-...+.|.+.++... .....+........+|++.|.+..++
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~---------------------~~~~l~~~~l~~P~~iavdp~~g~ly 174 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---------------------HRKVLLWQSLEKPRAIALHPMEGTIY 174 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------SCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC---------------------ceEEEEeCCCCCcceEEEecCcCeEE
Confidence 445778888766577777777788999888651 11222323334678899998765244
Q ss_pred EEEeCC-CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeE
Q 018322 246 VTGDCN-SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324 (358)
Q Consensus 246 ~sgs~d-g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (358)
++-... +.|...++....... .....-...+.|+|+|.+..++.+-+..+.|..+|+.... ....+........
T Consensus 175 ~td~~~~~~I~r~~~dG~~~~~----~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~~~~~~~~~P~ 249 (349)
T 3v64_C 175 WTDWGNTPRIEASSMDGSGRRI----IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQGLPHPF 249 (349)
T ss_dssp EEECSSSCEEEEEETTSCSCEE----SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEE
T ss_pred EeccCCCCEEEEEeCCCCCcEE----EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEEEEeCCCCCce
Confidence 444444 778888875422111 1112234578999998777577777778899999987532 2222333334567
Q ss_pred EEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 325 VISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.|++. .+ .++.+-...+.|..++..++
T Consensus 250 giav~-~~-~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 250 AITVF-ED-SLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEEEE-TT-EEEEEETTTTEEEEEETTTC
T ss_pred EEEEE-CC-EEEEecCCCCeEEEEEccCC
Confidence 77773 34 67777667778888875443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.17 Score=46.98 Aligned_cols=113 Identities=11% Similarity=0.118 Sum_probs=75.8
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCccc--------CCCcccc------CCCcEEEEEECCCCCC--EEEE
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV--------DPNPFIG------HSASVEDLQWSPTEPD--VFAS 294 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~--------~~~~~~~------h~~~V~~v~~sp~~~~--~las 294 (358)
.+..+..||.|. +||..+ +..|.|-.+..+..... ..+.+.- ...+|..+.|||-+.+ .|++
T Consensus 67 ~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 67 DTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred ceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 678899999998 888776 66899998874221110 0011111 2467999999997643 8999
Q ss_pred EECCCcEEEEECCCCC-CeeEEE---------ecCCCCeEEEEEeCCCCcEEEEEe--CCCCEEE
Q 018322 295 CSVDGHIAIWDTRVGK-SALTSF---------KAHNADVNVISWNRLASCLLASGS--DDGTFSI 347 (358)
Q Consensus 295 ~s~Dg~I~iwD~r~~~-~~~~~~---------~~h~~~V~~i~~~p~~~~~lasgs--~Dg~i~i 347 (358)
-..|+.||+||+.... .|. .+ ......|.+++|..++ -.|...+ ..|-|+-
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~-lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDG-LTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTS-SCEEEEECTTSCEEEE
T ss_pred EecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCC-cEEEEEecCCCCCEEE
Confidence 9999999999998622 233 22 2233578999999876 5555533 6676653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.41 Score=42.56 Aligned_cols=159 Identities=10% Similarity=-0.056 Sum_probs=99.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
.....+++.+.+..+.++-...+.|.++++... .....+........+++..|.+. .|
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~---------------------~~~~~~~~~~~~P~~iavdp~~g-~l 134 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---------------------KRKTLFRENGSKPRAIVVDPVHG-FM 134 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---------------------SEEEEEECTTCCEEEEEEETTTT-EE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC---------------------ceEEEEECCCCCcceEEeCCCCC-EE
Confidence 456788888755467777677888999987651 11112222334678899998665 55
Q ss_pred EEEeC-C-CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-ec--CC
Q 018322 246 VTGDC-N-SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KA--HN 320 (358)
Q Consensus 246 ~sgs~-d-g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~--h~ 320 (358)
+.++. . +.|...++....... .....-...+.|+|+|.+..++.+-+..+.|..+|+.... ...+ .. ..
T Consensus 135 y~~d~~~~~~I~~~~~dG~~~~~----~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~--~~~~~~~~~~~ 208 (316)
T 1ijq_A 135 YWTDWGTPAKIKKGGLNGVDIYS----LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN--RKTILEDEKRL 208 (316)
T ss_dssp EEEECSSSCEEEEEETTSCCEEE----EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEEECTTTT
T ss_pred EEEccCCCCeEEEEcCCCCCeEE----EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc--eEEEeecCCcc
Confidence 54443 2 678888774321111 0111234578999999877577777777899999987522 2222 21 22
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.....|++. .+ .++.+-...+.|..+|..+++
T Consensus 209 ~~P~giav~-~~-~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 209 AHPFSLAVF-ED-KVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp SSEEEEEEE-TT-EEEEEETTTTEEEEEETTTCC
T ss_pred CCcEEEEEE-CC-EEEEEECCCCeEEEEeCCCCc
Confidence 345677775 34 677777777889988876543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.12 Score=48.64 Aligned_cols=155 Identities=10% Similarity=0.056 Sum_probs=90.0
Q ss_pred ceeEEEEcCC--CCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 167 CVNRIRAMTQ--NPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 167 ~V~~i~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
....|.+.|+ +..++++-.. +.|+.++... ..+..+........+|+|++++. +
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~----------------------g~v~~~~~~~~~P~giavd~dG~-l 195 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVN----------------------QYVDIKTTNIGQCADVNFTLNGD-M 195 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTT----------------------TEEEEECCCCSCEEEEEECTTCC-E
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCC----------------------CEEEEeecCCCCccEEEECCCCC-E
Confidence 3567888884 2245554333 7888888754 22333333445688999999997 6
Q ss_pred EEEEeCC---C-cEEEEecCCCCCcccCCCccccCCCcEEEEEECC-CCCCEEEEEECCCcEEEEECCCCCCeeEEE-ec
Q 018322 245 LVTGDCN---S-CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP-TEPDVFASCSVDGHIAIWDTRVGKSALTSF-KA 318 (358)
Q Consensus 245 l~sgs~d---g-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~ 318 (358)
+++.... . .+...+... .+.. ...+ ........++++| .+. ++++-..++.|+.+|..++. ....+ ..
T Consensus 196 yVad~~~~~~~~gv~~~~~~~--~~~~-~~~~-~~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~-~~~~~~~~ 269 (433)
T 4hw6_A 196 VVVDDQSSDTNTGIYLFTRAS--GFTE-RLSL-CNARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGT-LTEEEVMM 269 (433)
T ss_dssp EEEECCSCTTSEEEEEECGGG--TTCC-EEEE-EECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCC-EEEEEEEC
T ss_pred EEEcCCCCcccceEEEEECCC--Ceec-cccc-cccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCe-EEEEEecc
Confidence 5554421 1 233333221 1110 0011 1234456788999 554 77777778899999987543 21222 11
Q ss_pred -CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 319 -HNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 319 -h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
....-..|+|+|++..++++-...+.|..+++.
T Consensus 270 ~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 270 DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 122235699999994366666667889998864
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.19 Score=45.09 Aligned_cols=158 Identities=11% Similarity=0.073 Sum_probs=87.8
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEE-EeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQV-WDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
.++.+.+..+.+.+.+ .+++.+. .|.+.. +|-... ..+++ -......+..+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~-~~~~~g~-~G~~~~S~d~gG~-------------------tW~~~--~~~~~~~~~~~~~~~~ 215 (327)
T 2xbg_A 159 QEAIGVMRNLNRSPSG-EYVAVSS-RGSFYSTWEPGQT-------------------AWEPH--NRTTSRRLHNMGFTPD 215 (327)
T ss_dssp CSCCCCEEEEEECTTS-CEEEEET-TSSEEEEECTTCS-------------------SCEEE--ECCSSSCEEEEEECTT
T ss_pred cCCCcceEEEEEcCCC-cEEEEEC-CCcEEEEeCCCCC-------------------ceeEC--CCCCCCccceeEECCC
Confidence 3556778888888877 5666654 444433 332110 12222 1233457788999887
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe---
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--- 317 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--- 317 (358)
+. . +.++.+|.+++++...+..|......-..+...+.++.+.+.+. +++.+ .+|.|. +....+. .-..+.
T Consensus 216 g~-~-~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g-~~g~i~-~S~DgG~-tW~~~~~~~ 289 (327)
T 2xbg_A 216 GR-L-WMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAG-GAGALL-CSQDGGQ-TWQQDVDVK 289 (327)
T ss_dssp SC-E-EEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC-EEEEE-STTCEE-EESSTTS-SCEECGGGT
T ss_pred CC-E-EEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE-EEEEe-CCCeEE-EeCCCCc-ccEEcCccC
Confidence 65 4 45556788877642222333311111011234588999998765 55554 467763 3333332 222232
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.....+++|.|.+++ .++.++.+|.|.-++-
T Consensus 290 ~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 290 KVPSNFYKILFFSPD--QGFILGQKGILLRYVT 320 (327)
T ss_dssp TSSSCCCEEEEEETT--EEEEECSTTEEEEECC
T ss_pred CCCCCeEEEEEECCC--ceEEEcCCceEEEEcC
Confidence 134568889997555 4556678898877765
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.05 Score=54.40 Aligned_cols=73 Identities=11% Similarity=0.167 Sum_probs=49.3
Q ss_pred EEEECCCCCCEEEEEECCCc-------------------EEEEECCCCCCeeEEEec--CC-------CCeEEEEEeCCC
Q 018322 281 DLQWSPTEPDVFASCSVDGH-------------------IAIWDTRVGKSALTSFKA--HN-------ADVNVISWNRLA 332 (358)
Q Consensus 281 ~v~~sp~~~~~las~s~Dg~-------------------I~iwD~r~~~~~~~~~~~--h~-------~~V~~i~~~p~~ 332 (358)
.++++|... +++.++.++. |..||.++++ .+..+.. |. ..+.......++
T Consensus 239 ~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G 316 (689)
T 1yiq_A 239 SFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGE-YVWHYQTTPGDAWDYTATQHMILAELPIDG 316 (689)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCC-EEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred ceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCc-eeEeeecCCcccccccCCCCcEEEeeccCC
Confidence 567888777 7888877763 9999999964 5555543 22 112222222344
Q ss_pred C--cEEEEEeCCCCEEEEeCCCCCC
Q 018322 333 S--CLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 333 ~--~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
. ..|+.++.+|.|+++|.++++.
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCE
Confidence 1 2788899999999999998764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.18 Score=45.72 Aligned_cols=100 Identities=11% Similarity=0.161 Sum_probs=59.5
Q ss_pred CeEEEEeCCCcEEEEecCCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
+.++.++.++.|..+|..++.. |. +............. +. .++.++.++.|..+|.+++. .+........
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~-----~~~~~~~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~-~~W~~~~~~~ 174 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQ-----TKVAGEALSRPVVS--DG-LVLIHTSNGQLQALNEADGA-VKWTVNLDMP 174 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEE-----EECSSCCCSCCEEE--TT-EEEEECTTSEEEEEETTTCC-EEEEEECCC-
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEE-----EeCCCceEcCCEEE--CC-EEEEEcCCCeEEEEECCCCc-EEEEEeCCCC
Confidence 3788888899999999987432 22 11111111111111 23 67778889999999998864 4444433221
Q ss_pred Ce-----EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 322 DV-----NVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 322 ~V-----~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.. ...... + ..++.++.+|.|..+|.++++
T Consensus 175 ~~~~~~~~~~~~~-~--~~v~~g~~~g~l~~~d~~tG~ 209 (376)
T 3q7m_A 175 SLSLRGESAPTTA-F--GAAVVGGDNGRVSAVLMEQGQ 209 (376)
T ss_dssp ----CCCCCCEEE-T--TEEEECCTTTEEEEEETTTCC
T ss_pred ceeecCCCCcEEE-C--CEEEEEcCCCEEEEEECCCCc
Confidence 11 112222 2 357777888999999988765
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.30 E-value=0.28 Score=45.45 Aligned_cols=125 Identities=10% Similarity=0.006 Sum_probs=76.4
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
.....+.+|+|++....++++-...+.|+.+++............+.........|++.+.+.+++.+-...+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 34457889999987652444444578899898864211000001112233567889998866657888778889999998
Q ss_pred CCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC-CCCEEEEeCCC
Q 018322 307 RVGKSALTSFKAHNADVNVISWNRLASCLLASGSD-DGTFSIHDLRL 352 (358)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~-Dg~i~iwDlr~ 352 (358)
... .....+.......+.|++.|.+..++.+-.. .+.|...++..
T Consensus 189 ~g~-~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 189 KGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp TTC-SEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred CCC-ceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence 753 2333333344457899999966355555433 46788888754
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.011 Score=59.38 Aligned_cols=165 Identities=10% Similarity=-0.072 Sum_probs=91.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
..+..|.|.+.+..++.+-...+.|+.+++...... ......+........+|++.+.+..++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~-----------------~~~~~~i~~~~~~P~glavD~~~g~LY 468 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------SSYDTVISRDIQAPDGLAVDWIHSNIY 468 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC------------------CCCCCBCCSCC--CCCEECCCSSSBCE
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCC-----------------cceEEEEeCCCCCcceEEEEeeCCcEE
Confidence 445667777765455555455667777777541000 011111111112234567765444255
Q ss_pred EEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-CcEEEEECCCCCCeeEEEecCCCCeE
Q 018322 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIAIWDTRVGKSALTSFKAHNADVN 324 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~iwD~r~~~~~~~~~~~h~~~V~ 324 (358)
++-...+.|.++++....... .+.........|+++|.+..++++-... +.|..+++.... ....+...-...+
T Consensus 469 ~tD~~~~~I~v~d~dg~~~~~----l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 469 WTDSVLGTVSVADTKGVKRKT----LFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPN 543 (699)
T ss_dssp ECCTTTSCEEEEBSSSCCEEE----ECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCC
T ss_pred EEeccCCeEEEEecCCCceEE----EEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCcc
Confidence 554567889999886422111 1111223457789999766566655433 778887775422 1111222234567
Q ss_pred EEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 325 VISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 325 ~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.|+|+|.+..++++-+..+.|..+|+..
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 8999998757777777778899998854
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.26 Score=44.66 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=78.9
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEec
Q 018322 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEP 259 (358)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~ 259 (358)
.+..++.+|.|..+|... .+.+.... .....++... +. .++.++.++.|..+|.
T Consensus 241 ~v~~~~~~g~l~~~d~~t---------------------G~~~w~~~--~~~~~~~~~~--~~-~l~~~~~~g~l~~~d~ 294 (376)
T 3q7m_A 241 VVFALAYNGNLTALDLRS---------------------GQIMWKRE--LGSVNDFIVD--GN-RIYLVDQNDRVMALTI 294 (376)
T ss_dssp EEEEECTTSCEEEEETTT---------------------CCEEEEEC--CCCEEEEEEE--TT-EEEEEETTCCEEEEET
T ss_pred EEEEEecCcEEEEEECCC---------------------CcEEeecc--CCCCCCceEE--CC-EEEEEcCCCeEEEEEC
Confidence 566667788899998865 23333222 1223334332 33 7888888999999999
Q ss_pred CCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEE-EEEeCCCCcEEE
Q 018322 260 ASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV-ISWNRLASCLLA 337 (358)
Q Consensus 260 ~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~-i~~~p~~~~~la 337 (358)
.++.. |... .. ....+...... +. .++.++.+|.|.++|.+++ ..+.........+.. .... + ..|+
T Consensus 295 ~tG~~~w~~~--~~--~~~~~~~~~~~--~~-~l~v~~~~g~l~~~d~~tG-~~~~~~~~~~~~~~~~~~~~-~--~~l~ 363 (376)
T 3q7m_A 295 DGGVTLWTQS--DL--LHRLLTSPVLY--NG-NLVVGDSEGYLHWINVEDG-RFVAQQKVDSSGFQTEPVAA-D--GKLL 363 (376)
T ss_dssp TTCCEEEEEC--TT--TTSCCCCCEEE--TT-EEEEECTTSEEEEEETTTC-CEEEEEECCTTCBCSCCEEE-T--TEEE
T ss_pred CCCcEEEeec--cc--CCCcccCCEEE--CC-EEEEEeCCCeEEEEECCCC-cEEEEEecCCCcceeCCEEE-C--CEEE
Confidence 77432 2110 01 11111112221 33 6888889999999999986 455555443333322 2222 3 4677
Q ss_pred EEeCCCCEEEEe
Q 018322 338 SGSDDGTFSIHD 349 (358)
Q Consensus 338 sgs~Dg~i~iwD 349 (358)
.++.+|.|..|+
T Consensus 364 v~~~~G~l~~~~ 375 (376)
T 3q7m_A 364 IQAKDGTVYSIT 375 (376)
T ss_dssp EEBTTSCEEEEE
T ss_pred EEeCCCEEEEEe
Confidence 788999999987
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.61 Score=47.14 Aligned_cols=162 Identities=12% Similarity=0.019 Sum_probs=98.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
..|++|...+++ .+-.|+.++-|..|+.....-.. . ...+. .-.-....|.++...+++ .|
T Consensus 310 ~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~--~------------~~~~~-~~~l~~~~V~~i~~d~~g--~l 370 (795)
T 4a2l_A 310 RSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFKN--I------------RNIPY-KNSLSDNVVSCIVEDKDK--NL 370 (795)
T ss_dssp SCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSEE--E------------CCCTT-SSSCSCSSEEEEEECTTS--CE
T ss_pred CcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccceE--E------------cCCCC-CCCCCCCeeEEEEECCCC--CE
Confidence 468888888877 34556777778888764411000 0 00000 000123468899887765 57
Q ss_pred EEEeCCCcEEEEecCCCCCcccCCCcc-----ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe---
Q 018322 246 VTGDCNSCIYLWEPASDATWNVDPNPF-----IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--- 317 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~-----~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--- 317 (358)
..|+.++-|..|+..+. ......... .-....|.++...+++. +|..|+.++-|.+||..++. +..+.
T Consensus 371 WiGt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-~lWigt~~~Gl~~~d~~~~~--~~~~~~~~ 446 (795)
T 4a2l_A 371 WIGTNDGGLNLYNPITQ-RFTSYTLQEDESARGIGSNNIKAVYVDEKKS-LVYIGTHAGGLSILHRNSGQ--VENFNQRN 446 (795)
T ss_dssp EEEESSSCEEEECTTTC-CEEEECCC------CCSCSCEEEEEEETTTT-EEEEEETTTEEEEEETTTCC--EEEECTTT
T ss_pred EEEECCCCeEEEcCCCC-cEEEEecCCCCcccCCCCccEEEEEEcCCCC-EEEEEeCcCceeEEeCCCCc--EEEeecCC
Confidence 77888888999998653 221100000 01235789998887775 57778887889999988742 33332
Q ss_pred --cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 318 --AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 318 --~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.....|.++...+++ .+.+.. . +-|.+||..+.
T Consensus 447 ~~l~~~~v~~i~~d~~g-~lwigt-~-~Gl~~~~~~~~ 481 (795)
T 4a2l_A 447 SQLVNENVYAILPDGEG-NLWLGT-L-SALVRFNPEQR 481 (795)
T ss_dssp SCCSCSCEEEEEECSSS-CEEEEE-S-SCEEEEETTTT
T ss_pred CCcCCCeeEEEEECCCC-CEEEEe-c-CceeEEeCCCC
Confidence 234578999988888 555443 3 45888887653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.57 Score=47.36 Aligned_cols=154 Identities=8% Similarity=0.052 Sum_probs=95.1
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc---------CCCCCeEEEE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG---------GHKDEGYAID 236 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~h~~~v~~l~ 236 (358)
..|.++...+++ .|-.|+.++-|..|+..... ...+. -....|+++.
T Consensus 357 ~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~----------------------~~~~~~~~~~~~~~l~~~~v~~i~ 412 (795)
T 4a2l_A 357 NVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQR----------------------FTSYTLQEDESARGIGSNNIKAVY 412 (795)
T ss_dssp SSEEEEEECTTS--CEEEEESSSCEEEECTTTCC----------------------EEEECCC------CCSCSCEEEEE
T ss_pred CeeEEEEECCCC--CEEEEECCCCeEEEcCCCCc----------------------EEEEecCCCCcccCCCCccEEEEE
Confidence 458888887777 34456777778999876521 11111 1234688888
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
..+.+. .|..|+.++-|.+|+..++.........-......|.++...+++. +.+ |+. +-|.+||..++ ....+
T Consensus 413 ~d~~g~-~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lwi-gt~-~Gl~~~~~~~~--~~~~~ 486 (795)
T 4a2l_A 413 VDEKKS-LVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGN-LWL-GTL-SALVRFNPEQR--SFTTI 486 (795)
T ss_dssp EETTTT-EEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSC-EEE-EES-SCEEEEETTTT--EEEEC
T ss_pred EcCCCC-EEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCC-EEE-Eec-CceeEEeCCCC--eEEEc
Confidence 877653 4888988788999998763221110000002345799999988887 444 444 55888998763 22222
Q ss_pred ec-------CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 317 KA-------HNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 317 ~~-------h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.. ....|.++...+++ .+.+.. . +-|..||..+
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g-~lWigt-~-~Gl~~~~~~~ 526 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHK-RLWIGG-E-EGLSVFKQEG 526 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTC-CEEEEE-S-SCEEEEEEET
T ss_pred cccccccccCCceEEEEEECCCC-CEEEEe-C-CceEEEeCCC
Confidence 21 23578999999888 555544 3 4577787654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.16 E-value=0.66 Score=41.38 Aligned_cols=160 Identities=10% Similarity=-0.055 Sum_probs=100.2
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
.....+++.+.+..++.+-...+.|.++++... .....+........+|++.|.+. .|
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~---------------------~~~~l~~~~~~~P~giavdp~~g-~l 136 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS---------------------LRKVLFWQELDQPRAIALDPSSG-FM 136 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------SCEEEECSSCSSEEEEEEEGGGT-EE
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCC---------------------cEEEEEeCCCCCccEEEEeCCCC-EE
Confidence 456778888766577777777788999988651 11122223334667899988764 56
Q ss_pred EEEeC--CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 246 VTGDC--NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 246 ~sgs~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
+.+.. .+.|...++....... .....-...+.|+|+|.+..++.+-+..+.|..+|+.... ....+.......
T Consensus 137 y~td~~~~~~I~r~~~dG~~~~~----~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P 211 (318)
T 3sov_A 137 YWTDWGEVPKIERAGMDGSSRFI----IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHP 211 (318)
T ss_dssp EEEECSSSCEEEEEETTSCSCEE----EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSCCSCE
T ss_pred EEEecCCCCEEEEEEcCCCCeEE----EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eEEEecCCCCCc
Confidence 55552 5678877775321111 1111224568999999777577777778899999987422 222222233456
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..|++.. + .++.+-...+.|..++..+++
T Consensus 212 ~glav~~-~-~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 212 FALTLFE-D-ILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred eEEEEeC-C-EEEEEecCCCeEEEEECCCCC
Confidence 6777753 3 567776677889888886554
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.11 E-value=0.52 Score=49.90 Aligned_cols=221 Identities=15% Similarity=0.126 Sum_probs=122.6
Q ss_pred eeChhHHHhhhcccccCc--ceeEEEEeccCCCccccCCceEEEEEeecCCC-----CCCceEEEEEeeccCCccccCCC
Q 018322 51 QCDPTAYNSLHAFHIGWP--CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEK-----PSWNSIGVFKVSNISGKRRELVP 123 (358)
Q Consensus 51 ~~~~~~Y~~~~~~~~~wP--~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~-----~~~n~i~i~~~~~l~~~~~~~~~ 123 (358)
.+||..+..++.+.++-- ++|+..+. +...+ ..||++||---. ...+.|+|+++.+
T Consensus 811 lidp~t~~~i~~~~l~~nE~~~sv~~v~--~~~~~-----~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~---------- 873 (1158)
T 3ei3_A 811 IIDQHTFEVLHAHQFLQNEYALSLVSCK--LGKDP-----NTYFIVGTAMVYPEEAEPKQGRIVVFQYSD---------- 873 (1158)
T ss_dssp EEETTTCCEEEEEECCTTEEEEEEEEEC--CTTCC-----CCEEEEEEEECCTTCSSCCCEEEEEEEEET----------
T ss_pred EEeCCCCeEEEEEeCCCCcceEEEEEEE--EccCC-----CEEEEEEeeecCCCCCCCCceEEEEEEEEC----------
Confidence 456666666665555432 23444332 11111 258999996432 3578999999840
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc
Q 018322 124 NKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALA 203 (358)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~ 203 (358)
............|+|+++.-.. | +++|..+ .+|+||++...
T Consensus 874 ------------------------------~kL~lv~~~~v~g~v~al~~~~-g-~Lla~ig--~~l~vy~l~~~----- 914 (1158)
T 3ei3_A 874 ------------------------------GKLQTVAEKEVKGAVYSMVEFN-G-KLLASIN--STVRLYEWTTE----- 914 (1158)
T ss_dssp ------------------------------TEEEEEEEEEESSCEEEEEEET-T-EEEEEET--TEEEEEEECTT-----
T ss_pred ------------------------------CEEEEEEEEEcCCcCEEEeeeC-C-EEEEEcC--CEEEEEECCCC-----
Confidence 1122234445689999988664 4 5666544 68999999762
Q ss_pred cccccccCCCCCCCCCCCcE-EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEE
Q 018322 204 ESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDL 282 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v 282 (358)
+.+. ....+. .+..+.....+. +++.|+.-..|.++..+....... ...-..+...++++
T Consensus 915 ----------------~~L~~~~~~~~-~i~~~~l~~~~~-~I~vgD~~~Sv~~~~y~~~~~~L~-~~a~D~~~~~vta~ 975 (1158)
T 3ei3_A 915 ----------------KELRTECNHYN-NIMALYLKTKGD-FILVGDLMRSVLLLAYKPMEGNFE-EIARDFNPNWMSAV 975 (1158)
T ss_dssp ----------------SCEEEEEEECC-CSCEEEEEEETT-EEEEEESSBCEEEEEEETTTTEEE-EEEECCSCBCEEEE
T ss_pred ----------------ceEEEEeeccc-cEEEEEEeccCC-EEEEEEhhheEEEEEEEcCCCeEE-EEEeecccccEEEE
Confidence 1111 111111 122223223455 999999888888876644222110 00111245567888
Q ss_pred EECCCCCCEEEEEECCCcEEEEECCCCC------Cee-EEEec-CCCCeEEEE---EeCCC--------CcEEEEEeCCC
Q 018322 283 QWSPTEPDVFASCSVDGHIAIWDTRVGK------SAL-TSFKA-HNADVNVIS---WNRLA--------SCLLASGSDDG 343 (358)
Q Consensus 283 ~~sp~~~~~las~s~Dg~I~iwD~r~~~------~~~-~~~~~-h~~~V~~i~---~~p~~--------~~~lasgs~Dg 343 (358)
.+--.+ .++.+..+|.|.+....... ..+ ..-.- .+..|+++. +.+.+ ...++-|+.+|
T Consensus 976 ~~ld~~--t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~G 1053 (1158)
T 3ei3_A 976 EILDDD--NFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNG 1053 (1158)
T ss_dssp EEEETT--EEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTS
T ss_pred EEEccC--cEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCC
Confidence 876443 67889999999998664311 111 11122 245677775 33322 24577778889
Q ss_pred CEEEE
Q 018322 344 TFSIH 348 (358)
Q Consensus 344 ~i~iw 348 (358)
.|.+.
T Consensus 1054 sIg~l 1058 (1158)
T 3ei3_A 1054 MIGLV 1058 (1158)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 88764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.63 Score=40.17 Aligned_cols=166 Identities=7% Similarity=-0.011 Sum_probs=97.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
+..-.|++.+.+ .++++.-.++.+.++++..... ....... ..++. .........+|+|+|.+. .|
T Consensus 70 ~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~-i~~~~~~----------~~~~~-~~~~N~g~EGLA~d~~~~-~L 135 (255)
T 3qqz_A 70 KDLETIEYIGDN-QFVISDERDYAIYVISLTPNSE-VKILKKI----------KIPLQ-ESPTNCGFEGLAYSRQDH-TF 135 (255)
T ss_dssp SSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCC-EEEEEEE----------ECCCS-SCCCSSCCEEEEEETTTT-EE
T ss_pred CChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCe-eeeeeee----------ccccc-cccccCCcceEEEeCCCC-EE
Confidence 577888888877 5656655667899998876321 0000000 00000 011234678999999987 66
Q ss_pred EEEeCCCcEEEEecCC--CCCcccCCCc--c--ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 246 VTGDCNSCIYLWEPAS--DATWNVDPNP--F--IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~--~~~~~~~~~~--~--~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
.++.......||.+.. .......... + ..+...+.+|+++|...++++.....+.|.++|... ..+..+.-.
T Consensus 136 ~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g--~~~~~~~L~ 213 (255)
T 3qqz_A 136 WFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG--EVIGEMSLT 213 (255)
T ss_dssp EEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC--CEEEEEECS
T ss_pred EEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC--CEEEEEEcC
Confidence 6666555555665541 0100000000 0 113346789999998887888888889999999764 233333211
Q ss_pred C---------CCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 320 N---------ADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 320 ~---------~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
. ..-..|+|.++| +++++ +.-+.++.|.
T Consensus 214 ~g~~~l~~~~~qpEGia~d~~G-~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 214 KGSRGLSHNIKQAEGVAMDASG-NIYIV-SEPNRFYRFT 250 (255)
T ss_dssp TTGGGCSSCCCSEEEEEECTTC-CEEEE-ETTTEEEEEE
T ss_pred CccCCcccccCCCCeeEECCCC-CEEEE-cCCceEEEEE
Confidence 1 256889999999 66666 5556666654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=1.3 Score=43.55 Aligned_cols=162 Identities=8% Similarity=-0.102 Sum_probs=98.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
-..+..|.|.+.+..++.+-...+.|+.+++... .....+........+|++.+.+..+
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~---------------------~~~~v~~~g~~~P~GlAvD~~~~~L 94 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGS---------------------ALEHVVEFGLDYPEGMAVDWLGKNL 94 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------SCEEEECSSCSCCCEEEEETTTTEE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCC---------------------CcEEEEeCCCCCcceEEEEeCCCEE
Confidence 3567889999977677888777889998888651 1112222111223345554444424
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE-CCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
+++-...+.|.+.++....... .+...-....+|++.|....++.+-. ..+.|...++.... ...+...-...
T Consensus 95 Y~tD~~~~~I~v~~~dG~~~~~----l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~--~~~l~~~~~~P 168 (628)
T 4a0p_A 95 YWADTGTNRIEVSKLDGQHRQV----LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE--RTTLVPNVGRA 168 (628)
T ss_dssp EEEETTTTEEEEEETTSTTCEE----EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEEEECSCSSE
T ss_pred EEEECCCCEEEEEecCCCcEEE----EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc--eEEEECCCCCc
Confidence 4555557789998885422211 11123345789999996663555542 35677777776432 22232345568
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+.|++.+.+..++.+=...+.|..+|+...
T Consensus 169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 999999977466666566778888888653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.29 Score=43.12 Aligned_cols=112 Identities=14% Similarity=0.027 Sum_probs=71.0
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC--cEEEEECC
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG--HIAIWDTR 307 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg--~I~iwD~r 307 (358)
....+++|++++. ++++-..++.|..||... .. . .+......+..+++.+++. ++++..... .|..+|..
T Consensus 32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g-~~-~----~~~~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDG-NQ-Q----IHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTTC-CE-E----EEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECT
T ss_pred CCcceEEECCCCC-EEEEeCCCCeEEEECCCC-ce-E----EEEeCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCC
Confidence 4677999999876 666666789999998754 21 1 1112234688999999998 666654432 46667766
Q ss_pred CCCCeeEEEe--cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 308 VGKSALTSFK--AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 308 ~~~~~~~~~~--~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
++. +..+. ......+.++..+.+ .++++-..++.|.++|...
T Consensus 104 ~g~--~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 104 DGT--VETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp TSC--EEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred CCe--EEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCC
Confidence 643 22221 122334556655555 5566655688999998764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.58 Score=43.80 Aligned_cols=159 Identities=11% Similarity=0.126 Sum_probs=93.4
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCC-cEEE-cCCCCCeEEEEeCCCCCC
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP-LVKF-GGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~h~~~v~~l~~s~~~~~ 243 (358)
...+.+++.|.+..++++-..++.|+.++.... .. ...+ .+.....+.|+|+|++.
T Consensus 228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g---------------------~~~~~~~~~~~~~~~~~ia~dpdG~- 285 (433)
T 4hw6_A 228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG---------------------TLTEEEVMMDTKGSNFHIVWHPTGD- 285 (433)
T ss_dssp SSBCCCEECTTTCCEEECBTTCSEEEEECTTTC---------------------CEEEEEEECSCCSSCEEEEECTTSS-
T ss_pred CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC---------------------eEEEEEeccCCCCCcccEEEeCCCC-
Confidence 345667888833367766666788888887631 11 0111 11122335799999997
Q ss_pred eEEEEe-CCCcEEEEecCCCCCcccCCCcccc---------------CCCcEEEEEE---------CCCCCCEEEEEECC
Q 018322 244 RLVTGD-CNSCIYLWEPASDATWNVDPNPFIG---------------HSASVEDLQW---------SPTEPDVFASCSVD 298 (358)
Q Consensus 244 ~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~---------------h~~~V~~v~~---------sp~~~~~las~s~D 298 (358)
+|..+. ..+.|+.+++............+.+ .-.....+++ .+.+. ++++-...
T Consensus 286 ~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n 364 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDS 364 (433)
T ss_dssp EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTT
T ss_pred EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCC
Confidence 555554 5678999886532111100011111 1124567888 66665 77777778
Q ss_pred CcEEEEECCCCCCeeEEEecC------------------CCCeEEEEEe-CCCCcEEEEEeCCCCEEEEeCC
Q 018322 299 GHIAIWDTRVGKSALTSFKAH------------------NADVNVISWN-RLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 299 g~I~iwD~r~~~~~~~~~~~h------------------~~~V~~i~~~-p~~~~~lasgs~Dg~i~iwDlr 351 (358)
+.|+.++. .+ .+.++.+. -.....|++. +++ .++++=..++.|+.+++.
T Consensus 365 ~~I~~~~~-~G--~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 365 HTVRVLTP-EG--RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRK-CFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TEEEEECT-TS--EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTT-EEEEEEGGGTEEEEEEEC
T ss_pred CEEEEECC-CC--CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCC-EEEEEeCCCCEEEEEecC
Confidence 89999985 22 33333221 1236789999 566 777776677888888764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.12 Score=51.09 Aligned_cols=116 Identities=12% Similarity=0.055 Sum_probs=71.6
Q ss_pred eEEEEcC-CCCcEEEEEeCCC-----------cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC-CCCCeEEE
Q 018322 169 NRIRAMT-QNPHICASWADTG-----------HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG-HKDEGYAI 235 (358)
Q Consensus 169 ~~i~~~p-~~~~~lat~s~dg-----------~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l 235 (358)
..+++.+ .+ .+++.|+.+. .+.+||.... ....+..+.. +.....++
T Consensus 189 ~~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-------------------~w~~~~~~~~~~~~~~~~~ 248 (656)
T 1k3i_A 189 AAAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-------------------IVSDRTVTVTKHDMFCPGI 248 (656)
T ss_dssp SEEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTC-------------------CBCCCEEEECSCCCSSCEE
T ss_pred eeEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCC-------------------cEEeCcccCCCCCCccccc
Confidence 3556677 55 7888887543 5788888763 1233333322 22334457
Q ss_pred EeCCCCCCeEEEEeC-CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE-CC-----CcEEEEECCC
Q 018322 236 DWNPITTGRLVTGDC-NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VD-----GHIAIWDTRV 308 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~D-----g~I~iwD~r~ 308 (358)
++..++. +++.|+. +..+.+||+.+ ..|.... .+.. ...-.+++..+++. +++.|+ .+ ..+.+||..+
T Consensus 249 ~~~~~g~-lyv~GG~~~~~v~~yd~~t-~~W~~~~-~~~~-~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 249 SMDGNGQ-IVVTGGNDAKKTSLYDSSS-DSWIPGP-DMQV-ARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EECTTSC-EEEECSSSTTCEEEEEGGG-TEEEECC-CCSS-CCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTT
T ss_pred cCCCCCC-EEEeCCCCCCceEEecCcC-CceeECC-CCCc-cccccceEEecCCe-EEEEeCcccCCcccccceEeCCCC
Confidence 7778887 8888874 55899999976 4555321 1211 11123455667787 888888 44 5799999987
Q ss_pred C
Q 018322 309 G 309 (358)
Q Consensus 309 ~ 309 (358)
.
T Consensus 324 ~ 324 (656)
T 1k3i_A 324 K 324 (656)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.88 Score=40.60 Aligned_cols=108 Identities=13% Similarity=0.273 Sum_probs=62.3
Q ss_pred CCCCCeEEEEeCCCCCCeEEEEeCCCcEEE-EecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYL-WEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 227 ~h~~~v~~l~~s~~~~~~l~sgs~dg~I~l-wd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
.+...++++.+.+.+. +++.+. .|.|.. +|- .+..|... -......+..+.+.+++. ++ .++.+|.+++++
T Consensus 160 ~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~S~d~-gG~tW~~~---~~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGE-YVAVSS-RGSFYSTWEP-GQTAWEPH---NRTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSD 231 (327)
T ss_dssp SCCCCEEEEEECTTSC-EEEEET-TSSEEEEECT-TCSSCEEE---ECCSSSCEEEEEECTTSC-EE-EEETTTEEEEEE
T ss_pred CCCcceEEEEEcCCCc-EEEEEC-CCcEEEEeCC-CCCceeEC---CCCCCCccceeEECCCCC-EE-EEeCCceEEEec
Confidence 3445788999999775 666554 555544 332 12334311 123456788999999886 44 556678887764
Q ss_pred CCCCCCeeEEEe----cCCCCeEEEEEeCCCCcEEEEEeCCCCE
Q 018322 306 TRVGKSALTSFK----AHNADVNVISWNRLASCLLASGSDDGTF 345 (358)
Q Consensus 306 ~r~~~~~~~~~~----~h~~~V~~i~~~p~~~~~lasgs~Dg~i 345 (358)
...+. .-..+. .+...+..|.+.+.+ .+++.+. +|.|
T Consensus 232 ~D~G~-tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g~-~g~i 272 (327)
T 2xbg_A 232 PDNSE-NWGELLSPLRRNSVGFLDLAYRTPN-EVWLAGG-AGAL 272 (327)
T ss_dssp TTEEE-EECCCBCTTSSCCSCEEEEEESSSS-CEEEEES-TTCE
T ss_pred CCCCC-eeEeccCCcccCCcceEEEEecCCC-EEEEEeC-CCeE
Confidence 22111 101111 123358889998877 6666654 5666
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.52 E-value=1.3 Score=44.93 Aligned_cols=161 Identities=11% Similarity=-0.057 Sum_probs=97.6
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
......|++.+.+.+++++-...+.|.+.++... .....+........+|++.|.+. +
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~---------------------~~~~l~~~~l~~P~gIaVDp~~g-~ 527 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---------------------KRKTLFRENGSKPRAIVVDPVHG-F 527 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---------------------SEEEEEECTTCCEEEEEEETTTT-E
T ss_pred CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC---------------------eEEEEEeCCCCCcceEEEecCCC-C
Confidence 3556778888777677777777788888888751 11122223334678999998764 5
Q ss_pred EEEEeC--CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec--CC
Q 018322 245 LVTGDC--NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA--HN 320 (358)
Q Consensus 245 l~sgs~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~--h~ 320 (358)
|+.... .+.|...++....... .+...-...+.|++++.+..++++-.....|..+++.... ....+.. .-
T Consensus 528 LYwtD~g~~~~I~~~~~dG~~~~~----lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~-~~~v~~~~~~l 602 (791)
T 3m0c_C 528 MYWTDWGTPAKIKKGGLNGVDIYS----LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRL 602 (791)
T ss_dssp EEEEECSSSCEEEEEETTSCCEEE----EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTT
T ss_pred EEEecCCCCCeEEEEecCCCceEE----EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc-eEEEecCCCcc
Confidence 555543 2678888775322111 1122235688999998777566666667789999986532 2222222 12
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.....|++.. + +++++-...+.|...|..+++
T Consensus 603 ~~P~glav~~-~-~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 603 AHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp SSEEEEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred CCCCEEEEeC-C-EEEEEECCCCEEEEEeCCCCc
Confidence 2344566532 2 566666667788888765553
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.51 E-value=0.057 Score=53.55 Aligned_cols=114 Identities=8% Similarity=0.025 Sum_probs=69.7
Q ss_pred EEEeCC-CCCCeEEEEeCCC-----------cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-CCc
Q 018322 234 AIDWNP-ITTGRLVTGDCNS-----------CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGH 300 (358)
Q Consensus 234 ~l~~s~-~~~~~l~sgs~dg-----------~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~ 300 (358)
+.++.+ .+. +++.|+.+. .+.+||+.+ +.|......-..+.....++++.+++. +++.|+. +..
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t-~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~ 266 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPST-GIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKK 266 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTT-CCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTC
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCC-CcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCc
Confidence 556666 565 777776543 588999977 455421111111333344567788888 8888884 568
Q ss_pred EEEEECCCCCCeeEEE-ecCCC-CeEEEEEeCCCCcEEEEEe-CC-----CCEEEEeCCCC
Q 018322 301 IAIWDTRVGKSALTSF-KAHNA-DVNVISWNRLASCLLASGS-DD-----GTFSIHDLRLL 353 (358)
Q Consensus 301 I~iwD~r~~~~~~~~~-~~h~~-~V~~i~~~p~~~~~lasgs-~D-----g~i~iwDlr~~ 353 (358)
+.+||..+... ..+ ..+.. .-.++...+++ .+++.|+ .+ ..+.+||..+.
T Consensus 267 v~~yd~~t~~W--~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 267 TSLYDSSSDSW--IPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEEEEGGGTEE--EECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred eEEecCcCCce--eECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCC
Confidence 99999986321 111 11111 12345566678 8888888 44 46899998764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=1.3 Score=43.43 Aligned_cols=165 Identities=7% Similarity=-0.125 Sum_probs=98.6
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
...+....|.|.+.+..++.+=...+.|+.+++... ......+........+|++.+.+.
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~--------------------~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT--------------------ESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCEEEEEEETTTT
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCC--------------------CceEEEEeCCCCCcCeEEEEecCC
Confidence 344567889999877567766566678888887651 111222322224566777777655
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-CCcEEEEECCCCCCeeEEEecCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSALTSFKAHNA 321 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~~~~~~h~~ 321 (358)
.++++-...+.|.+.++....... .+...-....+|++.|.+..++.+-.. .+.|...++... .....+...-.
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~----l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~-~~~~l~~~~~~ 171 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKV----LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIY 171 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEE----EECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCS
T ss_pred EEEEEeCCCCEEEEEECCCCCEEE----EEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC-ceEEEEeCCCC
Confidence 255555567899999986422111 111233456789999976646665422 456666666532 22222233345
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
..+.|++.+.+..++.+=...+.|...|+..
T Consensus 172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred CCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence 6799999997646666656677888888764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.16 Score=50.50 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=38.6
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+|.|..||++++ +.+.++..+. .+....+...+ .+++.|+.||.|+.||.++++.
T Consensus 437 ~g~l~A~D~~tG-~~~W~~~~~~-~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 437 SGALLAWDPVKQ-KAAWKVPYPT-HWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp EEEEEEEETTTT-EEEEEEEESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred cceEEEEeCCCC-cEEEEccCCC-CCcCceeEeCC-CEEEEECCcccchhhhhhcChh
Confidence 478999999986 4555554332 33333444455 6888899999999999998763
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.085 Score=52.84 Aligned_cols=155 Identities=10% Similarity=-0.060 Sum_probs=86.8
Q ss_pred eeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE-cCCCCCeEEEEeCCCCCCeEE
Q 018322 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-GGHKDEGYAIDWNPITTGRLV 246 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~~~~l~ 246 (358)
...|++.+.+..++++-...+.|.++++.. ..+..+ ........+|++.|.+. +|+
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg----------------------~~~~~l~~~~~~~P~giavDp~~g-~ly 511 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKG----------------------VKRKTLFREQGSKPRAIVVDPVHG-FMY 511 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSS----------------------CCEEEECCCSSCCCCCEECCSSSS-CCE
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCC----------------------CceEEEEeCCCCCcceEEEccCCC-cEE
Confidence 345566644435555545566777777654 111222 11223456788888764 444
Q ss_pred EEeC--CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe--cCCCC
Q 018322 247 TGDC--NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK--AHNAD 322 (358)
Q Consensus 247 sgs~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~--~h~~~ 322 (358)
.+.. .+.|..+++....... .+...-...+.|+|+|.+..++++-+..+.|..+|+.... ....+. .....
T Consensus 512 ~td~~~~~~I~~~~~dG~~~~~----l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~ 586 (699)
T 1n7d_A 512 WTDWGTPAKIKKGGLNGVDIYS----LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAH 586 (699)
T ss_dssp ECCCSSSCCEEBCCSSSCCCCE----ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSS
T ss_pred EcccCCCCeEEEEeCCCCCeeE----EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCC
Confidence 4432 2678777764322111 0111223466799999877688888788899999986522 111111 11122
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
...|++..+ .++++....+.|..+|..+
T Consensus 587 P~glavd~~--~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 587 PFSLAVFED--KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CCCCEEETT--EEEEECSTTTCEEEEETTT
T ss_pred ceEeEEECC--EEEEEeCCCCeEEEEEccC
Confidence 334555442 5666666778899888654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.95 E-value=1.1 Score=41.71 Aligned_cols=159 Identities=12% Similarity=0.120 Sum_probs=90.0
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 246 (358)
..+.+.+.|.+..++++-...+.|+.|+...... ..+... +.......|+|+|++. +|+
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~-------------------~~~~~~-~~~~~P~gia~~pdG~-~ly 285 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQET-------------------TPLFTI-QDSGWEFHIQFHPSGN-YAY 285 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE-------------------EEEEEC-SSSSCCEEEEECTTSS-EEE
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE-------------------EEEEEc-CCCCcceeEEEcCCCC-EEE
Confidence 4567788994337777777778899999865110 011111 1123467899999997 555
Q ss_pred EE-eCCCcEEEEecCCCCCcccCCCccccC---------------CCcEE-EEEEC--------CCCCCEEEEEECCCcE
Q 018322 247 TG-DCNSCIYLWEPASDATWNVDPNPFIGH---------------SASVE-DLQWS--------PTEPDVFASCSVDGHI 301 (358)
Q Consensus 247 sg-s~dg~I~lwd~~~~~~~~~~~~~~~~h---------------~~~V~-~v~~s--------p~~~~~las~s~Dg~I 301 (358)
.+ ...+.|..++.............+.+. -.... .+... +.+. ++++-...+.|
T Consensus 286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I 364 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCI 364 (430)
T ss_dssp EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEE
T ss_pred EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEE
Confidence 55 457789998875321100000111110 11122 34443 3344 66666667788
Q ss_pred EEEECCCCCCeeEEEecC------------------CCCeEEEEEeCC-CCcEEEEEeCCCCEEEEeCC
Q 018322 302 AIWDTRVGKSALTSFKAH------------------NADVNVISWNRL-ASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 302 ~iwD~r~~~~~~~~~~~h------------------~~~V~~i~~~p~-~~~~lasgs~Dg~i~iwDlr 351 (358)
+.++. .+ .+..+.+. -.....|++.|+ + .++++-..++.|+.+++.
T Consensus 365 ~~i~~-~G--~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g-~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 365 RILTP-QG--RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERE-CFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEECT-TS--EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTT-EEEEEEGGGTEEEEEEEC
T ss_pred EEECC-CC--cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCC-EEEEEECCCCeEEEEccC
Confidence 88873 22 23333221 114688999995 5 777776677888888753
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.95 E-value=1.9 Score=43.36 Aligned_cols=154 Identities=13% Similarity=0.002 Sum_probs=94.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc----------CCCCCeEEE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG----------GHKDEGYAI 235 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l 235 (358)
..|.++...+++ .|-.|+.++-|..|+..... ...+. .....|.++
T Consensus 313 ~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~~~~v~~i 368 (781)
T 3v9f_A 313 ASARYIFQDSFN--NIWIGTWGGGINFISNAPPT----------------------FHTWSYSPTQMNESSLSNKVVSSV 368 (781)
T ss_dssp SCEEEEEECSSC--CEEEEEBSSCEEEECSSCCS----------------------CEEEC----CCCSSCCSSSCEEEE
T ss_pred CeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCc----------------------ceeeccCccccccCCCCCcceEEE
Confidence 467888888777 34556666778888876421 11110 122468888
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
...+.+ .|..|+.++-|..|+..+. ...............|.++...+++. +. .|+.++-|..+|.+++ ....
T Consensus 369 ~~d~~g--~lWigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~~~v~~i~~d~~g~-lW-igt~~~Gl~~~~~~~~--~~~~ 441 (781)
T 3v9f_A 369 CDDGQG--KLWIGTDGGGINVFENGKR-VAIYNKENRELLSNSVLCSLKDSEGN-LW-FGTYLGNISYYNTRLK--KFQI 441 (781)
T ss_dssp EECTTS--CEEEEEBSSCEEEEETTEE-EEECC-----CCCSBEEEEEECTTSC-EE-EEETTEEEEEECSSSC--EEEE
T ss_pred EEcCCC--CEEEEeCCCcEEEEECCCC-eEEEccCCCCCCCcceEEEEECCCCC-EE-EEeccCCEEEEcCCCC--cEEE
Confidence 887765 5677776677889987542 21100000112346799999888876 44 4677677889988763 2333
Q ss_pred Ee---cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 316 FK---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 316 ~~---~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+. .....|.+|...+++ .+.+ |+. +-|.+||..+.
T Consensus 442 ~~~~~~~~~~v~~i~~d~~g-~lwi-gt~-~Gl~~~~~~~~ 479 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDKNK-KIWI-GTH-AGVFVIDLASK 479 (781)
T ss_dssp CCSTTTCCCCEEEEEECTTS-EEEE-EET-TEEEEEESSSS
T ss_pred eccCCCCCCeEEEEEECCCC-CEEE-EEC-CceEEEeCCCC
Confidence 32 134578999888877 4444 444 45888887654
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.59 E-value=3 Score=41.92 Aligned_cols=171 Identities=12% Similarity=0.003 Sum_probs=94.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
..|++|...+++ .+..|+..+-|.+++.....-..-........ ..+.....-....|++|...+.+ .|
T Consensus 258 ~~i~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~-------~~~~~~~~l~~~~v~~i~~D~~g--~l 326 (781)
T 3v9f_A 258 SYIFSIKQLKDN--KLWIATELNGIMILDLQQNQFLLPEQIRFEFI-------REGDNNYSLSNASARYIFQDSFN--NI 326 (781)
T ss_dssp CCEEEEEECTTS--EEEEEESSSCEEEEETTCC---------CEEE-------CBCSSTTSBSSSCEEEEEECSSC--CE
T ss_pred ceEEEEEECCCC--CEEEEeCCCCeEEECCCCCeeeeeeccccccc-------cCCCCCCCCCCCeEEEEEEeCCC--CE
Confidence 568888887777 45556665668888876521100000000000 00000001123468888887766 57
Q ss_pred EEEeCCCcEEEEecCCCCCcccCCC-----ccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE----
Q 018322 246 VTGDCNSCIYLWEPASDATWNVDPN-----PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF---- 316 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~-----~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~---- 316 (358)
..|+.++-|..++.....-...... ...-....|.++...+++. +-.|+.++-|..||..+. ....+
T Consensus 327 Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~--~~~~~~~~~ 402 (781)
T 3v9f_A 327 WIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKR--VAIYNKENR 402 (781)
T ss_dssp EEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEE--EEECC----
T ss_pred EEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCC--eEEEccCCC
Confidence 7777778889998765321110000 0111235699999888876 556676777888997652 11111
Q ss_pred ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 317 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 317 ~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
......|.++...+++ .+.+ |+.++-|..+|.++.
T Consensus 403 ~~~~~~v~~i~~d~~g-~lWi-gt~~~Gl~~~~~~~~ 437 (781)
T 3v9f_A 403 ELLSNSVLCSLKDSEG-NLWF-GTYLGNISYYNTRLK 437 (781)
T ss_dssp -CCCSBEEEEEECTTS-CEEE-EETTEEEEEECSSSC
T ss_pred CCCCcceEEEEECCCC-CEEE-EeccCCEEEEcCCCC
Confidence 1234568888888777 5444 555566888887543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=4.3 Score=39.80 Aligned_cols=117 Identities=5% Similarity=-0.135 Sum_probs=67.7
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC-CCcEEEEECCCC
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVG 309 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~ 309 (358)
...+|++...+..++++-+..+.|.+.++....... .+...-....+|++.|....++.+-.. .+.|...++...
T Consensus 393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~----l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~ 468 (619)
T 3s94_A 393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI----LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGS 468 (619)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE----EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE----EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCC
Confidence 344555554444255555567889999886422111 111233567899999975535555432 356666666532
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.........-...+.|++.+.+..++.+=+..+.|..+++..
T Consensus 469 -~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 469 -DRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp -SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSS
T ss_pred -ccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCC
Confidence 222222333456789999987635555555567788888754
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.30 E-value=2 Score=40.92 Aligned_cols=172 Identities=10% Similarity=0.041 Sum_probs=95.5
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCC-------CCcc-ccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLR-------SHLN-ALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.++++|.+..++++-..++.|+.+|+. .... ....... . .....+... +.....+.|+|+
T Consensus 248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~---~-----g~~~~l~~~-~~~~~p~~ia~~ 318 (496)
T 3kya_A 248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN---P-----NTFKQLFTI-ADPSWEFQIFIH 318 (496)
T ss_dssp CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC---T-----TTEEEEEEC-SSSSCCEEEEEC
T ss_pred CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc---c-----cccceeEec-CCCCCceEEEEc
Confidence 346778899665788888888999999986 2110 0000000 0 000011112 223356799999
Q ss_pred CCCCCeEEEEe-CCCcEEEEecCCCCCcccCCCccccC---------------CCcEE-EEEEC-------CCCCCEEEE
Q 018322 239 PITTGRLVTGD-CNSCIYLWEPASDATWNVDPNPFIGH---------------SASVE-DLQWS-------PTEPDVFAS 294 (358)
Q Consensus 239 ~~~~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~h---------------~~~V~-~v~~s-------p~~~~~las 294 (358)
|++. +|..++ ....|+.++.............+.+. -.... .+... +.+. ++++
T Consensus 319 p~G~-~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVa 396 (496)
T 3kya_A 319 PTGK-YAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFV 396 (496)
T ss_dssp TTSS-EEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEE
T ss_pred CCCC-EEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCe-EEEE
Confidence 9997 655554 56788887654321111000111111 11233 34443 3444 7777
Q ss_pred EECCCcEEEEECCCCCCeeEEEecC------------------------CCCeEEEEEeCC-CCcEEEEEeCCCCEEEEe
Q 018322 295 CSVDGHIAIWDTRVGKSALTSFKAH------------------------NADVNVISWNRL-ASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 295 ~s~Dg~I~iwD~r~~~~~~~~~~~h------------------------~~~V~~i~~~p~-~~~~lasgs~Dg~i~iwD 349 (358)
-.....||.++. .+ .+.++-+. -.....|++.++ + .++++=..+..|+.++
T Consensus 397 D~~N~rIr~i~~-~G--~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g-~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 397 DRLNFCVRKVTP-EG--IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE-MFYVHDQVGHTIRTIS 472 (496)
T ss_dssp EGGGTEEEEECT-TC--BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT-EEEEEETTTTEEEEEE
T ss_pred ECCCCEEEEEeC-CC--CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC-EEEEEeCCCCEEEEEE
Confidence 777889999983 32 34444221 123578999996 6 6777766778999988
Q ss_pred CCCC
Q 018322 350 LRLL 353 (358)
Q Consensus 350 lr~~ 353 (358)
+...
T Consensus 473 ~~~~ 476 (496)
T 3kya_A 473 MEQE 476 (496)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7643
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=94.26 E-value=1.3 Score=41.13 Aligned_cols=106 Identities=12% Similarity=0.156 Sum_probs=69.3
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccC----CCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC---
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH----SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS--- 311 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h----~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~--- 311 (358)
.++. .++.+- ++.||.-++...... +.+..- -..|..+..+|+|. ++|..+ +..|.|..+..+..
T Consensus 30 ~n~t-~i~~a~-~n~iR~~~i~~~~~Y----k~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 30 QNGT-RIVFIQ-DNIIRWYNVLTDSLY----HSLNFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp TTTT-EEEEEE-TTEEEEEETTTCSSC----EEEECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCC
T ss_pred cCCC-EEEEEE-CCEEEEEECCCCCcc----eEEecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCc
Confidence 3444 555554 578888888643321 122111 22567799999998 666665 56899988874221
Q ss_pred --------eeEEEec------CCCCeEEEEEeCCCC--cEEEEEeCCCCEEEEeCCC
Q 018322 312 --------ALTSFKA------HNADVNVISWNRLAS--CLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 312 --------~~~~~~~------h~~~V~~i~~~p~~~--~~lasgs~Dg~i~iwDlr~ 352 (358)
....+.. ...+|..+.|+|.+. ..|++-..|++|++||+..
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN 158 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence 1123322 256799999999763 3788888999999999986
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.7 Score=45.87 Aligned_cols=73 Identities=15% Similarity=0.219 Sum_probs=48.5
Q ss_pred EEEECCCCCCEEEEEECCC-------------------cEEEEECCCCCCeeEEEec--CC-------CCeEEEEEeCCC
Q 018322 281 DLQWSPTEPDVFASCSVDG-------------------HIAIWDTRVGKSALTSFKA--HN-------ADVNVISWNRLA 332 (358)
Q Consensus 281 ~v~~sp~~~~~las~s~Dg-------------------~I~iwD~r~~~~~~~~~~~--h~-------~~V~~i~~~p~~ 332 (358)
.+++.|... +++.++.++ .|..+|.++++ .+..+.. |. .++....+..++
T Consensus 234 ~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~-~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 234 SMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK-LAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC-EEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred ceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc-eeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 467788776 777777665 49999999864 5555543 22 222222333355
Q ss_pred C--cEEEEEeCCCCEEEEeCCCCCC
Q 018322 333 S--CLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 333 ~--~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
. ..|+.++.+|.++++|.++++.
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKL 336 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCE
T ss_pred cEEEEEEEECCCCEEEEEECCCCCE
Confidence 1 2688899999999999988763
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=94.14 E-value=2.2 Score=41.43 Aligned_cols=55 Identities=24% Similarity=0.235 Sum_probs=36.3
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+|.|..||+++++ .+.+..... .+..-.....+ .+++.|+.||.|+.||.++++.
T Consensus 465 ~G~l~A~D~~tG~-~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 465 VGSLRAMDPVSGK-VVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp SEEEEEECTTTCC-EEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred cceEEEEECCCCC-EEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCCCE
Confidence 5889999999864 555553322 22211112234 5788899999999999998864
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=0.35 Score=47.12 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=44.3
Q ss_pred CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCC-CeEEEEEe
Q 018322 251 NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNA-DVNVISWN 329 (358)
Q Consensus 251 dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~-~V~~i~~~ 329 (358)
+|.|..||+.++.. . ..+. +...+....+...+. +++.++.||.|+.||.+++ +.+.++..... .-.-+.+.
T Consensus 443 ~g~l~a~D~~tG~~-~---W~~~-~~~~~~~~~~~t~gg-~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~~~~~~p~~~~ 515 (571)
T 2ad6_A 443 MGQIRAFDLTTGKA-K---WTKW-EKFAAWGGTLYTKGG-LVWYATLDGYLKALDNKDG-KELWNFKMPSGGIGSPMTYS 515 (571)
T ss_dssp CEEEEEECTTTCCE-E---EEEE-ESSCCCSBCEEETTT-EEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEE
T ss_pred CCeEEEEECCCCCE-E---EEec-CCCCccceeEEECCC-EEEEEcCCCeEEEEECCCC-CEEEEEeCCCCcEeeeEEEE
Confidence 57888888876432 1 1111 111111111222344 6667899999999999996 46666643322 11223455
Q ss_pred CCCCcEEEEEe
Q 018322 330 RLASCLLASGS 340 (358)
Q Consensus 330 p~~~~~lasgs 340 (358)
.++..++++.+
T Consensus 516 ~~G~~yv~~~~ 526 (571)
T 2ad6_A 516 FKGKQYIGSMY 526 (571)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEC
Confidence 67733444443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=5 Score=39.41 Aligned_cols=158 Identities=6% Similarity=-0.064 Sum_probs=102.0
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
.....|++.+.+.++..+-...+.|.+.++... .....+...-....+|+..|... .|
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~---------------------~~~~l~~~~l~~P~~iavdp~~G-~l 137 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ---------------------HRQVLVWKDLDSPRALALDPAEG-FM 137 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTST---------------------TCEEEECSSCCCEEEEEEETTTT-EE
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCC---------------------cEEEEEeCCCCCcccEEEccCCC-eE
Confidence 456788888766577777777788999888651 11112223334678999998654 55
Q ss_pred EEEeC--CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 246 VTGDC--NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 246 ~sgs~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
...+. .+.|...++..... ..+...-...+.|++++.+..++.+-...+.|..+|+..... ..+.......
T Consensus 138 Y~tD~g~~~~I~r~~~dG~~~-----~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P 210 (628)
T 4a0p_A 138 YWTEWGGKPKIDRAAMDGSER-----TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHP 210 (628)
T ss_dssp EEEECSSSCEEEEEETTSCSC-----EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCE
T ss_pred EEeCCCCCCEEEEEeCCCCce-----EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCc
Confidence 55552 46777777643222 112223456789999998775777777788999999976332 2233333445
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..|++.. + .++.|-...+.|...|..+++
T Consensus 211 ~glav~~-~-~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 211 FGLTQYQ-D-YIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred eEEEEEC-C-EEEEecCCCCEEEEEECCCCC
Confidence 6777765 4 677776677889999876654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=1.9 Score=41.81 Aligned_cols=55 Identities=20% Similarity=0.016 Sum_probs=36.4
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
+|.|..||+.+++ .+.++... ..+....+...+ .+++.++.||.|+.||.++++.
T Consensus 443 ~g~l~a~D~~tG~-~~W~~~~~-~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 443 MGQIRAFDLTTGK-AKWTKWEK-FAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp CEEEEEECTTTCC-EEEEEEES-SCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred CCeEEEEECCCCC-EEEEecCC-CCccceeEEECC-CEEEEEcCCCeEEEEECCCCCE
Confidence 5789999999864 55555322 222222233334 4677789999999999998764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=2.2 Score=35.95 Aligned_cols=163 Identities=10% Similarity=0.064 Sum_probs=85.2
Q ss_pred EEecC--CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCcc-ccccccccccCCCCCCCCCCCcEEEcCCC--CCeEE
Q 018322 160 RKVAH--QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLN-ALAESETIVGQGAPQVSNQSPLVKFGGHK--DEGYA 234 (358)
Q Consensus 160 ~~~~H--~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~ 234 (358)
+.+++ -..+..+.|+|++ .+.|+ .+|.++-.+..+... ..- .....+ +.. ....+
T Consensus 33 ~~iG~~gw~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~----------------~s~t~I-G~~Gw~~F~a 92 (236)
T 1tl2_A 33 TLIGKGGWSNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWM----------------GRAKKI-GNGGWNQFQF 92 (236)
T ss_dssp EEEESSSCTTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHH----------------HHCEEE-ECSCGGGCSE
T ss_pred cccCccccccceeEEECCCc-cEEEE--eCCeEEEECCCCCCccccc----------------ccccEe-cccccccceE
Confidence 34444 2578899999977 67776 667665555432100 000 001111 111 12458
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCC--CCcccCCCccc-cCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASD--ATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS 311 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~--~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~ 311 (358)
+-|.|++. +.++ .||.|+-++..+. ..|.-....+- +--..+..|.+.|++. +.|.. |+.++-+-..+...
T Consensus 93 ~~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~ 166 (236)
T 1tl2_A 93 LFFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQ 166 (236)
T ss_dssp EEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTT
T ss_pred EEECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCC
Confidence 88999886 5555 4699988886332 22321111110 1114679999999997 55544 77754332221110
Q ss_pred -----eeEEEe-cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 312 -----ALTSFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 312 -----~~~~~~-~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
....+. ..-..-.-+.|.+++ .+.+.- +| +||-....
T Consensus 167 ~~wl~~~~~~g~~g~~~yr~l~f~~~G-~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 167 DNWLARATKIGQGGWDTFKFLFFSSVG-TLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp CCHHHHCEEEESSSGGGEEEEEECTTS-CEEEEE--TT--EEEEESCC
T ss_pred cccccccceeccCCcceEEEEEECCCC-cEEEEe--CC--eEEecCCc
Confidence 111221 222234556799988 666655 66 44544444
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.43 Score=46.60 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=45.9
Q ss_pred CCcEEEEecCCCCC-cccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe-EEEEE
Q 018322 251 NSCIYLWEPASDAT-WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV-NVISW 328 (358)
Q Consensus 251 dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V-~~i~~ 328 (358)
.|.|..||+.++.. |. +... ..+..-.....+. +++.++.||.++.||.+++ +.+.++......+ .-+.|
T Consensus 465 ~G~l~A~D~~tG~~~W~-----~~~~-~~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG-~~lW~~~~~~g~~a~P~~y 536 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWE-----HKEH-LPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSG-KELWKFQTGSGIVSPPITW 536 (582)
T ss_dssp SEEEEEECTTTCCEEEE-----EEES-SCCCSCCEEETTT-EEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEE
T ss_pred cceEEEEECCCCCEEEE-----ecCC-CCCcccceEeCCC-EEEEECCCCcEEEEECCCC-CEEEEecCCCCcccCceEE
Confidence 57888899877432 22 1111 1111101111244 6777999999999999996 4666665433221 23567
Q ss_pred eCCCCcEEEEE
Q 018322 329 NRLASCLLASG 339 (358)
Q Consensus 329 ~p~~~~~lasg 339 (358)
..++..++++.
T Consensus 537 ~~~G~qYv~~~ 547 (582)
T 1flg_A 537 EQDGEQYLGVT 547 (582)
T ss_dssp EETTEEEEEEE
T ss_pred EECCEEEEEEE
Confidence 67774455544
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=3.7 Score=40.09 Aligned_cols=55 Identities=16% Similarity=0.048 Sum_probs=34.8
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.|.|..||+++++ .+.+... ...+..-.....+ .+++.|+.||.|+.||.++++.
T Consensus 452 ~G~l~A~D~~tG~-~~W~~~~-~~~~~~g~~~tag-g~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 452 LGQIKAYNAITGD-YKWEKME-RFAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp CEEEEEECTTTCC-EEEEEEE-SSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred cCeEEEEECCCCC-EEeEecC-CCCccCcceEecC-CEEEEECCCCeEEEEECCCCCE
Confidence 4788899998864 4444432 1122111122234 5777799999999999998764
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=3 Score=37.68 Aligned_cols=151 Identities=9% Similarity=0.046 Sum_probs=78.3
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC---C
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI---T 241 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~ 241 (358)
-..-..|.|.|++ .++++ ...|.|++++.... ..+. ..+ .+.........|+++|+ +
T Consensus 28 l~~P~~ia~~pdG-~l~V~-e~~g~I~~~d~~G~-~~~~---------------~~~--v~~~g~~g~~gia~~pdf~~~ 87 (354)
T 3a9g_A 28 LEVPWSIAPLGGG-RYLVT-ERPGRLVLISPSGK-KLVA---------------SFD--VANVGEAGLLGLALHPEFPKK 87 (354)
T ss_dssp CSCEEEEEEEETT-EEEEE-ETTTEEEEECSSCE-EEEE---------------ECC--CCCSTTCSEEEEEECTTTTTS
T ss_pred CCCCeEEEEcCCC-eEEEE-eCCCEEEEEeCCCc-eEee---------------ccc--eeecCCCceeeEEeCCCCCcC
Confidence 4567899999998 55555 55699998873221 0000 000 11122346789999997 4
Q ss_pred CCeEEEEeC----C----CcEEEEecCCCC-Cc---ccCCCccc-cCCCcEEEEEECCCCCCEEEEEECC----------
Q 018322 242 TGRLVTGDC----N----SCIYLWEPASDA-TW---NVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVD---------- 298 (358)
Q Consensus 242 ~~~l~sgs~----d----g~I~lwd~~~~~-~~---~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~D---------- 298 (358)
. .|..+.. + ..|..|+..... .. ......+. ........|.|.|++. ++++.+..
T Consensus 88 g-~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~ 165 (354)
T 3a9g_A 88 S-WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLS 165 (354)
T ss_dssp C-EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTT
T ss_pred C-EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCC
Confidence 3 5544433 2 567777765421 10 00001111 1111246789999997 76665432
Q ss_pred ---CcEEEEECCCCC-------CeeEEEecCCCCeEEEEEeC-CCCcEEEEE
Q 018322 299 ---GHIAIWDTRVGK-------SALTSFKAHNADVNVISWNR-LASCLLASG 339 (358)
Q Consensus 299 ---g~I~iwD~r~~~-------~~~~~~~~h~~~V~~i~~~p-~~~~~lasg 339 (358)
|.|.-++....- .......+|.. .+.|+|+| .+ .++++-
T Consensus 166 ~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g-~l~v~d 215 (354)
T 3a9g_A 166 SLAGKILRVDEEGRPPADNPFPNSPIWSYGHRN-PQGIDWHRASG-VMVATE 215 (354)
T ss_dssp CCSSEEEEECTTSCCCTTSSSTTCCEEEECCSC-CCEEEECTTTC-CEEEEE
T ss_pred CCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCC-cceEEEeCCCC-CEEEEe
Confidence 445555543210 01111123333 56799999 56 666553
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.10 E-value=1.4 Score=39.89 Aligned_cols=107 Identities=12% Similarity=0.135 Sum_probs=62.4
Q ss_pred CCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc-ccCCCccccCCCcEEEEEECCC---CCCEEEEEECC-----C
Q 018322 229 KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATW-NVDPNPFIGHSASVEDLQWSPT---EPDVFASCSVD-----G 299 (358)
Q Consensus 229 ~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~-~~~~~~~~~h~~~V~~v~~sp~---~~~~las~s~D-----g 299 (358)
-...++|+|.|++. |+++...|.|.+++ .+... ......+.........|+|+|+ +..++++-... .
T Consensus 30 l~~P~~ia~~pdG~--l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGG--MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSC--EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCe--EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 34677999999986 45556679999998 22111 1001111222356889999998 44366655543 5
Q ss_pred cEEEEECCCCC----CeeEE-Ee---cCCCCeEEEEEeCCCCcEEEEEe
Q 018322 300 HIAIWDTRVGK----SALTS-FK---AHNADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 300 ~I~iwD~r~~~----~~~~~-~~---~h~~~V~~i~~~p~~~~~lasgs 340 (358)
.|..|+..... ..+.. +. ......+.|+|.|+| .++++-+
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G 153 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTG 153 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEEC
Confidence 67777776321 11211 22 111234689999999 7776644
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=91.74 E-value=8.5 Score=35.96 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=97.7
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCC----CCeEEEEeCCCCC
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHK----DEGYAIDWNPITT 242 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~s~~~~ 242 (358)
.|.-=+|-... .|+-.+. ..|+-|++.. ...|+..|..|. ..|....-+++..
T Consensus 107 ~VvfWkWis~~--~l~lVT~-taVyHWsi~~--------------------~s~P~kvFdR~~~L~~~QIInY~~d~~~k 163 (494)
T 1bpo_A 107 DVTFWKWISLN--TVALVTD-NAVYHWSMEG--------------------ESQPVKMFDRHSSLAGCQIINYRTDAKQK 163 (494)
T ss_dssp CCCEEEEEETT--EEEEECS-SEEEEEESSS--------------------SCCCEEEEECCGGGTTCEEEEEEECTTSS
T ss_pred CceEEEecCCC--eEEEEcC-CeeEEecccC--------------------CCCchhheecchhcccceEEEEEECCCCC
Confidence 34444443333 4444443 4688888865 246777776664 3566677777776
Q ss_pred CeEEEEe-------CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC--CCEEEEEECC---CcEEEEECCCC-
Q 018322 243 GRLVTGD-------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE--PDVFASCSVD---GHIAIWDTRVG- 309 (358)
Q Consensus 243 ~~l~sgs-------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~--~~~las~s~D---g~I~iwD~r~~- 309 (358)
+++..+ -.|.+.||.....- .+.+.||.+....+...-+. ..+|+.+... +.++|.++...
T Consensus 164 -W~~l~GI~~~~~~v~G~mQLYS~er~~-----sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~ 237 (494)
T 1bpo_A 164 -WLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (494)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEESTTCC-----EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCC
T ss_pred -eEEEEeecccCCcccceEEEeeccccc-----cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCc
Confidence 554322 24788899986532 25678888777766654221 2356666654 78999998653
Q ss_pred --CCe----eEEE----ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 310 --KSA----LTSF----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 310 --~~~----~~~~----~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+ ...+ .+-..---++..++.. .++..-..-|.|++||+.++.
T Consensus 238 ~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp TTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCC
T ss_pred cCCCCccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccce
Confidence 111 1111 1223345677888877 677777888999999999874
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=0.58 Score=39.50 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=60.8
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCC--cccCCCccc---cCCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT--WNVDPNPFI---GHSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~--~~~~~~~~~---~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
.+..|+|+|++. +.++ .+|.++-.+..+... |.-. .+.. +-+ ...++.|.|++. +.++ .||.|+-++
T Consensus 42 ~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~-~F~a~~fD~~G~-LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 42 NFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWN-QFQFLFFDPNGY-LYAV--SKDKLYKAS 113 (236)
T ss_dssp TCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECSCGG-GCSEEEECTTSC-EEEE--ETTEEEEES
T ss_pred cceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc-ccEecccccc-cceEEEECCCCC-EEEe--CCCEEEEeC
Confidence 667999999775 4444 577766555533111 1110 0111 111 147889999997 6555 569998777
Q ss_pred CCCCCC-----eeEEE-ecCCCCeEEEEEeCCCCcEEEEEeCCCCEE
Q 018322 306 TRVGKS-----ALTSF-KAHNADVNVISWNRLASCLLASGSDDGTFS 346 (358)
Q Consensus 306 ~r~~~~-----~~~~~-~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~ 346 (358)
..+... ....+ ..-=..+..|.|.|+| .+.+.. |+.+.
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~ly 157 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQFY 157 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEEE
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcEE
Confidence 543211 11112 1111468999999999 676666 67643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=91.67 E-value=15 Score=39.67 Aligned_cols=158 Identities=18% Similarity=0.224 Sum_probs=90.1
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC----CCCeEEEEeCCCCC
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH----KDEGYAIDWNPITT 242 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~s~~~~ 242 (358)
.|.-=+|-... .|+-.+. ..|+-|++.. ...|+..|..| ...|..-.-+++..
T Consensus 107 ~VvfWkWis~~--~l~lVT~-~aVyHW~~~~--------------------~s~P~k~fdR~~~L~~~QIinY~~d~~~k 163 (1630)
T 1xi4_A 107 DVTFWKWISLN--TVALVTD-NAVYHWSMEG--------------------ESQPVKMFDRHSSLAGCQIINYRTDAKQK 163 (1630)
T ss_pred CceEEEecCCC--eeEEEcC-CeEEEeccCC--------------------CCccHHHHhcchhcccCeeEEeeeCCCCC
Confidence 34433444333 3444333 4688898865 13455555444 23565666666665
Q ss_pred CeEE-EE------eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEEC--CCCCCEEEEEEC---CCcEEEEECCCC-
Q 018322 243 GRLV-TG------DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS--PTEPDVFASCSV---DGHIAIWDTRVG- 309 (358)
Q Consensus 243 ~~l~-sg------s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s--p~~~~~las~s~---Dg~I~iwD~r~~- 309 (358)
+++ +| .-.|.+.||...... .+.+.||.+....+... +....+|+.+.. .+.++|-++..+
T Consensus 164 -W~~l~gi~~~~~~v~G~mQLyS~er~~-----sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~ 237 (1630)
T 1xi4_A 164 -WLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (1630)
T ss_pred -eEEEEeeccCCCcccceeeeeeccccc-----chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCc
Confidence 544 33 245889999886532 25677887777666553 222235554443 378999998553
Q ss_pred --CCee-----EE-E--ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 310 --KSAL-----TS-F--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 310 --~~~~-----~~-~--~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..+. -. + .+-..-..++..++.. .++..-..-|.|+++|+.++.
T Consensus 238 ~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGT 291 (1630)
T ss_pred cCCCCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccch
Confidence 1111 00 1 1112333456677665 566677788999999998864
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=91.54 E-value=9 Score=35.85 Aligned_cols=111 Identities=9% Similarity=0.029 Sum_probs=58.9
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc------CCCCCeEEEEeC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG------GHKDEGYAIDWN 238 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~s 238 (358)
-..-+.|+|.|++ .++++-...+.|++++..... ...+..+. ........|+|+
T Consensus 26 l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~-------------------~~~~~~~~~~~~~~~g~~Gllgia~~ 85 (454)
T 1cru_A 26 LNKPHALLWGPDN-QIWLTERATGKILRVNPESGS-------------------VKTVFQVPEIVNDADGQNGLLGFAFH 85 (454)
T ss_dssp CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCC-------------------EEEEEECTTCCCCTTSSCSEEEEEEC
T ss_pred CCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCc-------------------EeEEecCCccccccCCCCceeEEEEC
Confidence 4566799999999 677764443468888754210 01111111 123467799999
Q ss_pred CC---CCCeEEEEeC-------------CCcEEEEecCCCC-Cc---ccCCCccc-cCCCcEEEEEECCCCCCEEEEEEC
Q 018322 239 PI---TTGRLVTGDC-------------NSCIYLWEPASDA-TW---NVDPNPFI-GHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 239 ~~---~~~~l~sgs~-------------dg~I~lwd~~~~~-~~---~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
|+ +. .|..+.. ...|.-|++.... .. .+....+. ........|.|.|++. ++++.+.
T Consensus 86 Pdf~~~g-~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd 163 (454)
T 1cru_A 86 PDFKNNP-YIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGD 163 (454)
T ss_dssp TTTTTSC-EEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECC
T ss_pred CCcCcCC-EEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECC
Confidence 95 33 4444332 2355555553321 10 00001111 1112468899999998 7766554
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=2.3 Score=38.43 Aligned_cols=108 Identities=12% Similarity=0.005 Sum_probs=61.8
Q ss_pred CCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCC---CCCEEEEEEC---C----
Q 018322 229 KDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT---EPDVFASCSV---D---- 298 (358)
Q Consensus 229 ~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~---~~~~las~s~---D---- 298 (358)
-...++|+|.|++. |+++...|.|++++. .+.........+.........|+|+|+ +..++++-+. +
T Consensus 28 l~~P~~ia~~pdG~--l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR--YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETTE--EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCCe--EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 34678999999874 666667799999973 322111101111122356889999997 4436555543 3
Q ss_pred CcEEEEECCCCC------CeeEE-Ee-cCCCCeEEEEEeCCCCcEEEEEe
Q 018322 299 GHIAIWDTRVGK------SALTS-FK-AHNADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 299 g~I~iwD~r~~~------~~~~~-~~-~h~~~V~~i~~~p~~~~~lasgs 340 (358)
..|..|+..... ..+.. +. ......+.|+|.|++ .++++-+
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G 153 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTG 153 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEEC
Confidence 567777765421 11111 22 111234679999999 7776644
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=90.90 E-value=5.3 Score=35.92 Aligned_cols=110 Identities=10% Similarity=0.100 Sum_probs=61.5
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCC-cccCC-CccccCCCcEEEEEECCC---CCCEEEEEEC-------
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDAT-WNVDP-NPFIGHSASVEDLQWSPT---EPDVFASCSV------- 297 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~-~~~~~-~~~~~h~~~V~~v~~sp~---~~~~las~s~------- 297 (358)
...++|+|.|++. .|+++...|.|++++...... ..... ..+.........|+|+|+ +..++++-+.
T Consensus 18 ~~P~~i~~~pdG~-~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNH-GMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTC-CEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCC-EEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 3567999999985 477778889999998532100 01000 111122345789999996 4436655443
Q ss_pred CCcEEEEECCCCCC------eeEE-Ee---cCCCCeEEEEEeCCCCcEEEEEeC
Q 018322 298 DGHIAIWDTRVGKS------ALTS-FK---AHNADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 298 Dg~I~iwD~r~~~~------~~~~-~~---~h~~~V~~i~~~p~~~~~lasgs~ 341 (358)
...|..|++..... .+.. +. .....-..|.|.|++ .++++-++
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd 149 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGE 149 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECC
Confidence 23566666543211 1111 11 111124679999999 77666544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=4.9 Score=36.38 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=62.5
Q ss_pred CeEEEEeCCCCCCeEEEEe-----------------CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEE
Q 018322 231 EGYAIDWNPITTGRLVTGD-----------------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFA 293 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs-----------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~la 293 (358)
....+...+++. ++++.. ..|.|.-++.. .. ..+...-..-+.|+|+|+++.+++
T Consensus 166 ~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~---~~----~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 166 SVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN---DV----RVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp SEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT---CC----EEEEEEESSEEEEEECTTSSEEEE
T ss_pred CCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEECC---eE----EEeecCCcccCcceECCCCCEEEE
Confidence 577888888875 555543 12445555541 11 222223356789999999986777
Q ss_pred EEECCCcEEEEECCCCCCe--eEEEecCCCCeEEEEEeC-CCCcEEEEEe
Q 018322 294 SCSVDGHIAIWDTRVGKSA--LTSFKAHNADVNVISWNR-LASCLLASGS 340 (358)
Q Consensus 294 s~s~Dg~I~iwD~r~~~~~--~~~~~~h~~~V~~i~~~p-~~~~~lasgs 340 (358)
+-+..+.|..|++...... ...+ ......-.+++.+ +| ++.+++.
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G-~lwva~~ 285 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTG-DLWVGCH 285 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTC-CEEEEEE
T ss_pred EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCC-cEEEEec
Confidence 7777899999998742221 1122 2244567788888 58 6666554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=90.32 E-value=2.5 Score=41.33 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=31.4
Q ss_pred EEEEEECCCcEEEEECCCCCCeeEEEecCCC-CeEEEEEeCCCCcEEEEE
Q 018322 291 VFASCSVDGHIAIWDTRVGKSALTSFKAHNA-DVNVISWNRLASCLLASG 339 (358)
Q Consensus 291 ~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~-~V~~i~~~p~~~~~lasg 339 (358)
+++.++.||.|+.||.++++ .+.++..... ...-+.|..+|..++++.
T Consensus 486 ~vf~gt~dg~l~A~D~~tG~-~lW~~~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 486 LVFYGTLDGYLKARDSDTGD-LLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp EEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCC-EEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence 66679999999999999964 6666643322 123355666774455544
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=90.30 E-value=7.1 Score=35.17 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=64.3
Q ss_pred EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCccc--CCCccccCCCcEEEEEECCC---CCCEEEEEE--
Q 018322 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV--DPNPFIGHSASVEDLQWSPT---EPDVFASCS-- 296 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~--~~~~~~~h~~~V~~v~~sp~---~~~~las~s-- 296 (358)
.+...-...++|+|.|++. +|++--..|.|++++...+....+ ....+.........|+++|+ +..++++-+
T Consensus 26 ~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 3444445788999999986 655554489999998654221110 01122233467899999995 332555433
Q ss_pred CCCcEEEEECCCC---------CCeeEE-Ee-cCCCCeEEEEEeCCCCcEEEEEe
Q 018322 297 VDGHIAIWDTRVG---------KSALTS-FK-AHNADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 297 ~Dg~I~iwD~r~~---------~~~~~~-~~-~h~~~V~~i~~~p~~~~~lasgs 340 (358)
.+..|.-|..... ...+.. +. .....-..|.|.|++ .++++.+
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~G 158 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTG 158 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECB
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEEC
Confidence 3445555554431 111211 21 112234679999999 7777654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=90.27 E-value=4.5 Score=36.23 Aligned_cols=116 Identities=10% Similarity=0.065 Sum_probs=71.7
Q ss_pred EcCCCCCeEEEEeCCCCCCeEEEEe-CCCcEEEEecCCCCCcccCCCcccc-----C-CCcEEEEEE---CCCCCCEEEE
Q 018322 225 FGGHKDEGYAIDWNPITTGRLVTGD-CNSCIYLWEPASDATWNVDPNPFIG-----H-SASVEDLQW---SPTEPDVFAS 294 (358)
Q Consensus 225 ~~~h~~~v~~l~~s~~~~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~-----h-~~~V~~v~~---sp~~~~~las 294 (358)
+.....-..+++|.+... +|..++ ..++|..|+...+..... .+.+ . ...+..|.| .|.+. ++++
T Consensus 8 ~~~~~~yPE~~~wd~~~g-~~~vs~l~~g~V~~~~~~~~~~~~~---~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv 82 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQ-VFYQSNLYKGRIEVYNPKTQSHFNV---VIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAV 82 (334)
T ss_dssp ECCTTCCCSCEEEETTTT-EEEEEETTTTEEEEECTTTCCEEEE---CCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEE
T ss_pred ecCcccCCcCccCcCCCC-EEEEEeccCCEEEEEcCCCCeEEEE---ecCCccccCCCcceeeEEEEeccCCCCc-EEEE
Confidence 333334455899988665 666666 689999999864322221 1221 1 124679999 68876 6665
Q ss_pred EEC-------------CCcEEEEECC---CCCCeeEEEe--cC-----------CCCeEEEEEeCCCCcEEEEEeCC-CC
Q 018322 295 CSV-------------DGHIAIWDTR---VGKSALTSFK--AH-----------NADVNVISWNRLASCLLASGSDD-GT 344 (358)
Q Consensus 295 ~s~-------------Dg~I~iwD~r---~~~~~~~~~~--~h-----------~~~V~~i~~~p~~~~~lasgs~D-g~ 344 (358)
... +..|..||+. +++ .+.... .. ....+.++..++| +..++++.- +.
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~-~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~ 160 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSK-PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPA 160 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTTCC-CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCE
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCCCC-EEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCe
Confidence 431 6789999998 543 333332 11 1248899999999 777777665 44
Q ss_pred EEE
Q 018322 345 FSI 347 (358)
Q Consensus 345 i~i 347 (358)
|..
T Consensus 161 I~r 163 (334)
T 2p9w_A 161 IAR 163 (334)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.21 E-value=2.1 Score=38.62 Aligned_cols=106 Identities=8% Similarity=0.098 Sum_probs=58.5
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC---CC
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI---TT 242 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~ 242 (358)
..-+.+.|.|++ .++++ ...|.|++++ ......+. ..+ .+.........|+|+|+ +.
T Consensus 31 ~~P~~ia~~pdG-~l~V~-e~~g~I~~i~-~g~~~~~~---------------~~~--v~~~g~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 31 EVPWALAFLPDG-GMLIA-ERPGRIRLFR-EGRLSTYA---------------ELS--VYHRGESGLLGLALHPRFPQEP 90 (352)
T ss_dssp SCEEEEEECTTS-CEEEE-ETTTEEEEEE-TTEEEEEE---------------ECC--CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCceEEEEcCCC-eEEEE-eCCCeEEEEE-CCCccEee---------------cce--EeecCCCCceeEEECCCCCCCC
Confidence 345689999999 56655 5569999998 32100000 001 11122346789999998 43
Q ss_pred CeEEEEeC-C-----CcEEEEecCCCCCc---ccCCCccc-----cCCCcEEEEEECCCCCCEEEEEE
Q 018322 243 GRLVTGDC-N-----SCIYLWEPASDATW---NVDPNPFI-----GHSASVEDLQWSPTEPDVFASCS 296 (358)
Q Consensus 243 ~~l~sgs~-d-----g~I~lwd~~~~~~~---~~~~~~~~-----~h~~~V~~v~~sp~~~~~las~s 296 (358)
.|..+.. . ..|..|+... ... ......+. .|. ...|+|.|++. ++++.+
T Consensus 91 -~lYv~~~~~~~~~~~~v~r~~~~~-~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~-Lyv~~G 153 (352)
T 2ism_A 91 -YVYAYRTVAEGGLRNQVVRLRHLG-ERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGM-LYVTTG 153 (352)
T ss_dssp -EEEEEEEECTTSSEEEEEEEEECS-SCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSC-EEEECC
T ss_pred -EEEEEEecCCCCCccEEEEEEeCC-CCcCceEEEEEeCCCCCCCCcC--CceEEECCCCC-EEEEEC
Confidence 4544432 2 5777787753 211 00001111 232 35899999996 776654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=90.07 E-value=5.3 Score=42.27 Aligned_cols=154 Identities=7% Similarity=0.009 Sum_probs=88.4
Q ss_pred ceeEEEEcC---CCCcEEEEEe----------CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 167 CVNRIRAMT---QNPHICASWA----------DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 167 ~V~~i~~~p---~~~~~lat~s----------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
.+.+++... +...+++.|+ ..|.|++|++... ..+.+.. ....+.++
T Consensus 830 ~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~-------------------kL~lv~~-~~v~g~v~ 889 (1158)
T 3ei3_A 830 YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG-------------------KLQTVAE-KEVKGAVY 889 (1158)
T ss_dssp EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT-------------------EEEEEEE-EEESSCEE
T ss_pred ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC-------------------EEEEEEE-EEcCCcCE
Confidence 345555432 2235777776 3478888888631 0112221 12346788
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCC-cEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA-SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA 312 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~-~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~ 312 (358)
+|+--. |+|++|- ..+|++|++....... .....+.. .+.++.. .+. +++.|..-..|.++-.+.....
T Consensus 890 al~~~~---g~Lla~i-g~~l~vy~l~~~~~L~---~~~~~~~~i~~~~l~~--~~~-~I~vgD~~~Sv~~~~y~~~~~~ 959 (1158)
T 3ei3_A 890 SMVEFN---GKLLASI-NSTVRLYEWTTEKELR---TECNHYNNIMALYLKT--KGD-FILVGDLMRSVLLLAYKPMEGN 959 (1158)
T ss_dssp EEEEET---TEEEEEE-TTEEEEEEECTTSCEE---EEEEECCCSCEEEEEE--ETT-EEEEEESSBCEEEEEEETTTTE
T ss_pred EEeeeC---CEEEEEc-CCEEEEEECCCCceEE---EEeeccccEEEEEEec--cCC-EEEEEEhhheEEEEEEEcCCCe
Confidence 887432 3677665 5799999996532211 00111111 1224433 344 7888888888887665543333
Q ss_pred eEEE--ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 313 LTSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 313 ~~~~--~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+..+ ..+...++++.|-.++ .++.+..+|.|.+.....
T Consensus 960 L~~~a~D~~~~~vta~~~ld~~--t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 960 FEEIARDFNPNWMSAVEILDDD--NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEECCSCBCEEEEEEEETT--EEEEEETTSEEEEEEECT
T ss_pred EEEEEeecccccEEEEEEEccC--cEEEEcCCCcEEEEecCC
Confidence 4334 3455678888887655 567788899998886543
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.06 E-value=8.6 Score=33.11 Aligned_cols=100 Identities=12% Similarity=0.200 Sum_probs=52.6
Q ss_pred eEEEEeCC-----CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-----CcEEEEECCCCCCee
Q 018322 244 RLVTGDCN-----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-----GHIAIWDTRVGKSAL 313 (358)
Q Consensus 244 ~l~sgs~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-----g~I~iwD~r~~~~~~ 313 (358)
+++.|+.+ ..+.+||+.+ ..|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+...
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~-~~W~~~~-~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W-- 234 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHT-GHWTNVT-PMATKRSGAGVALL--NDH-IYVVGGFDGTAHLSSVEAYNIRTDSW-- 234 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTT-TEEEEEC-CCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTEE--
T ss_pred EEEECCCCCCcccceEEEEeCCC-CcEEeCC-CCCcccccceEEEE--CCE-EEEEeCCCCCcccceEEEEeCCCCcE--
Confidence 66666544 4688899876 4554321 11111111122222 344 78888764 4689999987421
Q ss_pred EEEec---CCCCeEEEEEeCCCCcEEEEEeCC-----CCEEEEeCCCC
Q 018322 314 TSFKA---HNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLL 353 (358)
Q Consensus 314 ~~~~~---h~~~V~~i~~~p~~~~~lasgs~D-----g~i~iwDlr~~ 353 (358)
..+.. ......++.+ ++ .+++.|+.+ ..|.+||+.+.
T Consensus 235 ~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 235 TTVTSMTTPRCYVGATVL--RG-RLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EECCCCCCcccceeEEEE--CC-EEEEEcCcCCCcccccEEEEcCCCC
Confidence 12211 1111122222 45 788888765 35788888764
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=89.52 E-value=10 Score=35.57 Aligned_cols=113 Identities=9% Similarity=0.076 Sum_probs=63.8
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCC--CcccCCC-ccc-----cCCCcEEEEEECCC---CCCEEEEEECC
Q 018322 230 DEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA--TWNVDPN-PFI-----GHSASVEDLQWSPT---EPDVFASCSVD 298 (358)
Q Consensus 230 ~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~--~~~~~~~-~~~-----~h~~~V~~v~~sp~---~~~~las~s~D 298 (358)
...++|+|.|++.++|+++...|.|++++..... .....+. .+. ........|+|+|+ ...++++-+..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3567999999986567788889999999753211 1111111 111 11356789999996 22255554421
Q ss_pred C------------cEEEEECCCC---------CCeeEEEe--cCCCCeEEEEEeCCCCcEEEEEeCCC
Q 018322 299 G------------HIAIWDTRVG---------KSALTSFK--AHNADVNVISWNRLASCLLASGSDDG 343 (358)
Q Consensus 299 g------------~I~iwD~r~~---------~~~~~~~~--~h~~~V~~i~~~p~~~~~lasgs~Dg 343 (358)
. .|.-|.+... ...+..+. .....-..|+|.|++ .++++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCCCC
Confidence 1 3333554321 11223332 122346889999999 7777766543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.47 E-value=9.6 Score=32.84 Aligned_cols=92 Identities=12% Similarity=0.158 Sum_probs=47.6
Q ss_pred CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-----CcEEEEECCCCCCeeEEEecC---CCCe
Q 018322 252 SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-----GHIAIWDTRVGKSALTSFKAH---NADV 323 (358)
Q Consensus 252 g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-----g~I~iwD~r~~~~~~~~~~~h---~~~V 323 (358)
..+.+||+.+ ..|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+... ..+... ....
T Consensus 173 ~~~~~yd~~~-~~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 173 STVECYNATT-NEWTYIA-EMSTRRSGAGVGVL--NNL-LYAVGGHDGPLVRKSVEVYDPTTNAW--RQVADMNMCRRNA 245 (302)
T ss_dssp CCEEEEETTT-TEEEEEC-CCSSCCBSCEEEEE--TTE-EEEECCBSSSSBCCCEEEEETTTTEE--EEECCCSSCCBSC
T ss_pred cEEEEEeCCC-CcEEECC-CCccccccccEEEE--CCE-EEEECCCCCCcccceEEEEeCCCCCE--eeCCCCCCccccC
Confidence 3588899876 4554321 11111111122222 344 78888764 4688999987321 122111 1111
Q ss_pred EEEEEeCCCCcEEEEEeCCC-----CEEEEeCCCC
Q 018322 324 NVISWNRLASCLLASGSDDG-----TFSIHDLRLL 353 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg-----~i~iwDlr~~ 353 (358)
..+.+ ++ .+++.|+.++ .+.+||+.+.
T Consensus 246 ~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 246 GVCAV--NG-LLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred eEEEE--CC-EEEEECCcCCCcccccEEEEcCCCC
Confidence 12222 45 7888887654 4889998764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=89.22 E-value=8.7 Score=35.94 Aligned_cols=115 Identities=12% Similarity=0.134 Sum_probs=62.4
Q ss_pred EEcCCCCCeEEEEeCCCCCCeEEEEeCC-CcEEEEecCCCCCccc-CC-Cccc--cCCCcEEEEEECCC---CCCEEEEE
Q 018322 224 KFGGHKDEGYAIDWNPITTGRLVTGDCN-SCIYLWEPASDATWNV-DP-NPFI--GHSASVEDLQWSPT---EPDVFASC 295 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~~~~~l~sgs~d-g~I~lwd~~~~~~~~~-~~-~~~~--~h~~~V~~v~~sp~---~~~~las~ 295 (358)
.+...-...++|+|.|++. ++++ ... +.|++++...+....+ .. ..+. .....+..|+|+|+ +..++++-
T Consensus 21 ~~a~~l~~P~~~a~~pdG~-l~V~-e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 21 VILSNLNKPHALLWGPDNQ-IWLT-ERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEECCCSSEEEEEECTTSC-EEEE-ETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEECCCCCceEEEEcCCCc-EEEE-EcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 3333345678999999986 5555 555 4788887643221110 01 1111 12456789999995 44355555
Q ss_pred EC------------CCcEEEEECCCCC------CeeEE-Ee-cCCCCeEEEEEeCCCCcEEEEEeC
Q 018322 296 SV------------DGHIAIWDTRVGK------SALTS-FK-AHNADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 296 s~------------Dg~I~iwD~r~~~------~~~~~-~~-~h~~~V~~i~~~p~~~~~lasgs~ 341 (358)
+. ...|.-|+..... ..+.. +. ........|+|.|+| .++++.++
T Consensus 99 s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~Gd 163 (454)
T 1cru_A 99 TFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIGD 163 (454)
T ss_dssp EEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEECC
T ss_pred eccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEECC
Confidence 43 1245555543211 11221 21 112347899999999 67666554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=88.78 E-value=19 Score=38.92 Aligned_cols=200 Identities=11% Similarity=0.109 Sum_probs=107.6
Q ss_pred CCCCceee-eChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCC
Q 018322 44 LEEGEELQ-CDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELV 122 (358)
Q Consensus 44 ~~~~~~l~-~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~ 122 (358)
|+.|..|+ |+-.+-.-+.++.+.=|..--.|+.+. +.-+|++| .|+-|.+..-
T Consensus 82 Lrag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~----------~l~lVT~~--------aVyHW~~~~~-------- 135 (1630)
T 1xi4_A 82 LKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN----------TVALVTDN--------AVYHWSMEGE-------- 135 (1630)
T ss_pred EecCCeEEEeehHHhhhhcccccCCCceEEEecCCC----------eeEEEcCC--------eEEEeccCCC--------
Confidence 44455554 566777789999998888888898764 46677666 7888877310
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEec--CCCceeEEEEcCCCCcEEEEEe------CCCcEEEEe
Q 018322 123 PNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVA--HQGCVNRIRAMTQNPHICASWA------DTGHVQVWD 194 (358)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--H~~~V~~i~~~p~~~~~lat~s------~dg~V~iwd 194 (358)
..|...+...+ -...|-.-+.+++...++++|- -.|.+.+|.
T Consensus 136 ------------------------------s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS 185 (1630)
T 1xi4_A 136 ------------------------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS 185 (1630)
T ss_pred ------------------------------CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeee
Confidence 12211111000 0234555566666644444443 347888998
Q ss_pred CCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC--CCCCCeEEEEe---CCCcEEEEecCCC--CCccc
Q 018322 195 LRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN--PITTGRLVTGD---CNSCIYLWEPASD--ATWNV 267 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~~~~l~sgs---~dg~I~lwd~~~~--~~~~~ 267 (358)
+.... .+.+.||......+... +.....++-+. ..+.++|-++... +....
T Consensus 186 ~er~~----------------------sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f 243 (1630)
T 1xi4_A 186 VDRKV----------------------SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (1630)
T ss_pred ccccc----------------------chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC
Confidence 87632 12234444322222221 11111222221 1268888888543 11110
Q ss_pred CCC----cccc--CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCe
Q 018322 268 DPN----PFIG--HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADV 323 (358)
Q Consensus 268 ~~~----~~~~--h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V 323 (358)
..+ .+.. -..-..+++.++... ++...+.-|.|.++|+.++ .++..-+-....|
T Consensus 244 ~kk~~~~~~~~~~~~Dfpv~~~vs~k~g-~iy~itk~G~~~~~d~~t~-~~i~~~ris~~~i 303 (1630)
T 1xi4_A 244 PKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETG-TCIYMNRISGETI 303 (1630)
T ss_pred ccccccccCCcccccCcceEEEeccccC-EEEEEecCceEEEEecccc-hhhhhccccCCce
Confidence 000 0111 123345677888777 8889999999999999985 3443333333333
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=88.30 E-value=17 Score=34.05 Aligned_cols=225 Identities=11% Similarity=0.083 Sum_probs=129.9
Q ss_pred CCCCceee-eChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCC
Q 018322 44 LEEGEELQ-CDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELV 122 (358)
Q Consensus 44 ~~~~~~l~-~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~ 122 (358)
|+.+..|+ ||-.+-.-+.++.+.=|..--.|+.+. +.-||++| .++-|.+..
T Consensus 82 Lrag~~lQiFnle~K~klks~~~~e~VvfWkWis~~----------~l~lVT~t--------aVyHWsi~~--------- 134 (494)
T 1bpo_A 82 LKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN----------TVALVTDN--------AVYHWSMEG--------- 134 (494)
T ss_dssp EEETTEEEEEETTTTEEEEEEECSSCCCEEEEEETT----------EEEEECSS--------EEEEEESSS---------
T ss_pred EecCCeEEEEchHHhhhhcceecCCCceEEEecCCC----------eEEEEcCC--------eeEEecccC---------
Confidence 34444444 455556677788877788888888764 35666555 777787621
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecC--CCceeEEEEcCCCCcEEEEEe------CCCcEEEEe
Q 018322 123 PNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAH--QGCVNRIRAMTQNPHICASWA------DTGHVQVWD 194 (358)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H--~~~V~~i~~~p~~~~~lat~s------~dg~V~iwd 194 (358)
+ ..|...+...+. ...|-.-+.+++...++.+|- -.|.+.+|.
T Consensus 135 ----------------~-------------s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS 185 (494)
T 1bpo_A 135 ----------------E-------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS 185 (494)
T ss_dssp ----------------S-------------CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred ----------------C-------------CCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEee
Confidence 0 145444333221 245555566777655554443 237788998
Q ss_pred CCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC--CCCeEEEEeC---CCcEEEEecCCC--CCccc
Q 018322 195 LRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI--TTGRLVTGDC---NSCIYLWEPASD--ATWNV 267 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~~l~sgs~---dg~I~lwd~~~~--~~~~~ 267 (358)
... +..+.+.||......+..... ...+|+-+.. .+.+++-++... +....
T Consensus 186 ~er----------------------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 186 VDR----------------------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp STT----------------------CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred ccc----------------------cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence 876 334456677554433333211 1113333333 278999998543 11110
Q ss_pred CCC----cc--ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC
Q 018322 268 DPN----PF--IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 268 ~~~----~~--~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~ 341 (358)
..+ .+ ..-.+--.+++.++... ++...+.-|.|++||+.++ .++..-+-....|-.-+-+... .-++....
T Consensus 244 ~kk~vdv~fppe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTg-t~i~~nrIs~~~iF~t~~~~~~-~Gi~~Vnr 320 (494)
T 1bpo_A 244 PKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETG-TCIYMNRISGETIFVTAPHEAT-AGIIGVNR 320 (494)
T ss_dssp CCEEEECCCCTTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEETTT-TEEEEEET
T ss_pred cceeeeeeCCcccccCceeEEEecccCC-EEEEEecCceEEEEecccc-eeeeeecccCCceEEecccCCC-CcEEEEcc
Confidence 000 01 11234456788888887 8999999999999999996 5666666666666665555544 33444446
Q ss_pred CCCEEEEe
Q 018322 342 DGTFSIHD 349 (358)
Q Consensus 342 Dg~i~iwD 349 (358)
.|.|.--.
T Consensus 321 ~GqVl~v~ 328 (494)
T 1bpo_A 321 KGQVLSVC 328 (494)
T ss_dssp TCEEEEEE
T ss_pred CceEEEEE
Confidence 66655433
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=87.58 E-value=16 Score=32.97 Aligned_cols=146 Identities=11% Similarity=0.100 Sum_probs=83.6
Q ss_pred EEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC----CCC--eEEEEe-C--
Q 018322 180 ICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI----TTG--RLVTGD-C-- 250 (358)
Q Consensus 180 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~--~l~sgs-~-- 250 (358)
+++.....+-+.+||+.. +.+..+.. +.+..++.-|. +.. ++++.. .
T Consensus 42 ~ii~t~k~~gL~Vydl~G----------------------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~ 97 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDG----------------------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEG 97 (355)
T ss_dssp EEEEEETTTEEEEEETTS----------------------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTT
T ss_pred EEEEEcCCCCEEEEcCCC----------------------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCC
Confidence 444446668899999954 44555543 45566666552 110 223333 3
Q ss_pred CCcEEEEecCC-CCCcccCCC---ccccCCCcEEEEEE--CCC-CCCEEEEEECCCcEEEEECCC---C---CCeeEEEe
Q 018322 251 NSCIYLWEPAS-DATWNVDPN---PFIGHSASVEDLQW--SPT-EPDVFASCSVDGHIAIWDTRV---G---KSALTSFK 317 (358)
Q Consensus 251 dg~I~lwd~~~-~~~~~~~~~---~~~~h~~~V~~v~~--sp~-~~~~las~s~Dg~I~iwD~r~---~---~~~~~~~~ 317 (358)
+.+|.+|++.. .+.+..... ++..-...+..+|+ +|. +..+++....+|.+..|++.. + .+.+.++.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 57899997742 122211101 11111155667787 774 443566667789999998843 1 12445554
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
. .+.+..+...+.. ..|+.+-.+.-|..+|.+
T Consensus 178 l-gsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 178 M-NSQTEGMAADDEY-GRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp C-SSCEEEEEEETTT-TEEEEEETTTEEEEEECS
T ss_pred C-CCCcceEEEcCCC-CeEEEecccceEEEEeCC
Confidence 3 4568888888877 677788777556666644
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=87.20 E-value=25 Score=34.82 Aligned_cols=110 Identities=12% Similarity=0.101 Sum_probs=58.2
Q ss_pred CCCCeEEEEeCCC--cEEEEecCCCCCcccCCC--ccccCCCcEEEEEECCCCCCEEEEEEC--C-----CcEEEEECCC
Q 018322 240 ITTGRLVTGDCNS--CIYLWEPASDATWNVDPN--PFIGHSASVEDLQWSPTEPDVFASCSV--D-----GHIAIWDTRV 308 (358)
Q Consensus 240 ~~~~~l~sgs~dg--~I~lwd~~~~~~~~~~~~--~~~~h~~~V~~v~~sp~~~~~las~s~--D-----g~I~iwD~r~ 308 (358)
.+. +++.|+.++ .+.+||+.+ ..|..... ...........+.+......+++.|+. + ..+.+||+.+
T Consensus 500 ~~~-iyv~GG~~~~~~v~~yd~~t-~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 500 DGN-VLILGGVTEGPAMLLYNVTE-EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp TSC-EEEECCBCSSCSEEEEETTT-TEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred CCE-EEEECCCCCCCCEEEEECCC-CceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence 454 777776554 689999876 55653221 011111122234455542337777776 2 4588999987
Q ss_pred CCC-e---eEEEec---C-CCCeEEEEEeCCCCcEEEEEeCC--------CCEEEEeCCCC
Q 018322 309 GKS-A---LTSFKA---H-NADVNVISWNRLASCLLASGSDD--------GTFSIHDLRLL 353 (358)
Q Consensus 309 ~~~-~---~~~~~~---h-~~~V~~i~~~p~~~~~lasgs~D--------g~i~iwDlr~~ 353 (358)
... + -..+.. . .....++.+. ++ .+++.||.+ ..|.+||+.+.
T Consensus 578 ~~w~~~~~W~~~~~~p~~~R~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 578 ENATEPITVIKKLQHPLFQRYGSQIKYIT-PR-KLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp TCSSCCEEEEEEEECGGGCCBSCEEEEEE-TT-EEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred CccccceEEEEcCCCCCCCcccceEEEeC-CC-EEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 541 0 111111 1 1112223332 25 788888743 46889998764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.50 E-value=15 Score=31.56 Aligned_cols=100 Identities=12% Similarity=0.198 Sum_probs=51.2
Q ss_pred eEEEEeCC-----CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-----CcEEEEECCCCCCee
Q 018322 244 RLVTGDCN-----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-----GHIAIWDTRVGKSAL 313 (358)
Q Consensus 244 ~l~sgs~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-----g~I~iwD~r~~~~~~ 313 (358)
+++.|+.+ ..+.+||+.+ ..|.... ...........+.+ ++. +++.|+.+ ..+.+||+.+...
T Consensus 115 lyv~GG~~~~~~~~~~~~~d~~~-~~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W-- 187 (301)
T 2vpj_A 115 IYVSGGFDGSRRHTSMERYDPNI-DQWSMLG-DMQTAREGAGLVVA--SGV-IYCLGGYDGLNILNSVEKYDPHTGHW-- 187 (301)
T ss_dssp EEEECCBCSSCBCCEEEEEETTT-TEEEEEE-ECSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEE--
T ss_pred EEEEcccCCCcccceEEEEcCCC-CeEEECC-CCCCCcccceEEEE--CCE-EEEECCCCCCcccceEEEEeCCCCcE--
Confidence 56666543 3588888866 4444211 11111111112222 444 77777764 4688999887321
Q ss_pred EEEec---CCCCeEEEEEeCCCCcEEEEEeCC-----CCEEEEeCCCC
Q 018322 314 TSFKA---HNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLL 353 (358)
Q Consensus 314 ~~~~~---h~~~V~~i~~~p~~~~~lasgs~D-----g~i~iwDlr~~ 353 (358)
..+.. ......++.+ ++ .+++.|+.+ ..+.+||+.+.
T Consensus 188 ~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 188 TNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCC
Confidence 11111 1111122222 44 788888764 46889998764
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=86.48 E-value=18 Score=32.50 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=80.6
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE----EcCCCCCeEEEEeC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK----FGGHKDEGYAIDWN 238 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~h~~~v~~l~~s 238 (358)
..-..-+.|.|.|++ .++++-...|.|++++...... .++.. +.........|+++
T Consensus 29 ~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~-------------------~~v~~~~~v~~~g~~GllGia~~ 88 (347)
T 3das_A 29 TGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRK-------------------TELGEVPGVSPSGEGGLLGIALS 88 (347)
T ss_dssp CCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCE-------------------EEEEECTTCCCBTTBSEEEEEEC
T ss_pred cCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcE-------------------eeecccCceeecCCCCceeeEec
Confidence 345677899999999 6777765589999987543110 11111 12234467899999
Q ss_pred CC--CCCeEEEE---eCCCcEEEEecCCCC----Cc---ccCCCcc---ccCCCcEEEEEECCCCCCEEEEEEC------
Q 018322 239 PI--TTGRLVTG---DCNSCIYLWEPASDA----TW---NVDPNPF---IGHSASVEDLQWSPTEPDVFASCSV------ 297 (358)
Q Consensus 239 ~~--~~~~l~sg---s~dg~I~lwd~~~~~----~~---~~~~~~~---~~h~~~V~~v~~sp~~~~~las~s~------ 297 (358)
|+ ..+.|... ..+..|.-|.+.... .. ......+ ..| .-..|.|.|++. ++++.+.
T Consensus 89 Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG~-Lyvt~Gd~~~~~~ 165 (347)
T 3das_A 89 PDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDKM-LYAGTGESGDTGL 165 (347)
T ss_dssp TTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTSC-EEEECBCTTCGGG
T ss_pred cccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCCC-EEEEECCCCCCcc
Confidence 96 12245443 234566666654311 10 0000011 123 245689999997 7777553
Q ss_pred -------CCcEEEEECCCC--------CCeeEEEecCCCCeEEEEEeCCCCcEEEE
Q 018322 298 -------DGHIAIWDTRVG--------KSALTSFKAHNADVNVISWNRLASCLLAS 338 (358)
Q Consensus 298 -------Dg~I~iwD~r~~--------~~~~~~~~~h~~~V~~i~~~p~~~~~las 338 (358)
-|.|.-.+.... ...+. -.+|.. ...++|+|++ .++++
T Consensus 166 ~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~-a~G~RN-p~Gla~dp~G-~L~~~ 218 (347)
T 3das_A 166 SQDRKSLGGKILRMTPDGEPAPGNPFPGSPVY-SYGHRN-VQGLAWDDKQ-RLFAS 218 (347)
T ss_dssp TTCTTCSTTCEEEECTTSSBCTTCSSTTCCEE-EBCCSB-CCEEEECTTC-CEEEE
T ss_pred ccCCCCCCCEEEEEeCCCCccCCCCCCCCeEE-eeCCCC-cceEEECCCC-CEEEE
Confidence 244444444321 00111 124433 5678999987 55554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=86.20 E-value=14 Score=33.01 Aligned_cols=151 Identities=11% Similarity=0.043 Sum_probs=76.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC---CC
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI---TT 242 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~ 242 (358)
..-..|.|.|++..++++ ...|.|++++........ . ...+ ..+.........|+++|+ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~--~------------~~~~-~v~~~g~~g~~gia~~pdf~~~g 81 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAP--L------------SGVP-DVWAHGQGGLLDVVLAPDFAQSR 81 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCC--C------------BSCC-CCCCSTTCSEEEEEECTTHHHHC
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeE--e------------cCCc-ccccCCCCCceeEEECCCCCCCC
Confidence 456789999999326655 467999998853311000 0 0011 011122345689999996 33
Q ss_pred CeEEEEe-C-------CCcEEEEecCCCCCcc----cC--CCc---cccCCCcEEEEEECCCCCCEEEEEECC-------
Q 018322 243 GRLVTGD-C-------NSCIYLWEPASDATWN----VD--PNP---FIGHSASVEDLQWSPTEPDVFASCSVD------- 298 (358)
Q Consensus 243 ~~l~sgs-~-------dg~I~lwd~~~~~~~~----~~--~~~---~~~h~~~V~~v~~sp~~~~~las~s~D------- 298 (358)
.|..+. . ...|..|++....... .. ... ...|. -..|.|.|++. ++++.+..
T Consensus 82 -~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~-Lyv~~Gd~~~~~~~q 157 (353)
T 2g8s_A 82 -RIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGY-LFIALGENNQRPTAQ 157 (353)
T ss_dssp -EEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSE-EEEEECCTTCGGGGG
T ss_pred -EEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCc-EEEEECCCCCCCccC
Confidence 444442 2 2356666664321100 00 011 11232 35699999996 66665442
Q ss_pred ------CcEEEEECCCCC------------CeeEEEecCCCCeEEEEEeC-CCCcEEEE
Q 018322 299 ------GHIAIWDTRVGK------------SALTSFKAHNADVNVISWNR-LASCLLAS 338 (358)
Q Consensus 299 ------g~I~iwD~r~~~------------~~~~~~~~h~~~V~~i~~~p-~~~~~las 338 (358)
|.|.-++....- .....-.+|. ....++|.| .+ .++++
T Consensus 158 ~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g-~l~~~ 214 (353)
T 2g8s_A 158 DLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSN-ALWLN 214 (353)
T ss_dssp CTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTT-EEEEE
T ss_pred CCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECCCC-CEEEE
Confidence 456666654310 1111112333 367899999 56 55554
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=86.20 E-value=16 Score=31.63 Aligned_cols=102 Identities=15% Similarity=0.270 Sum_probs=51.7
Q ss_pred eEEEEeCC-----CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-----CcEEEEECCCCCCe-
Q 018322 244 RLVTGDCN-----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-----GHIAIWDTRVGKSA- 312 (358)
Q Consensus 244 ~l~sgs~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-----g~I~iwD~r~~~~~- 312 (358)
+++.|+.+ ..+.+||+.+ ..|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+....
T Consensus 124 iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 124 IYAVGGSHGCIHHNSVERYEPER-DEWHLVA-PMLTRRIGVGVAVL--NRL-LYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp EEEECCEETTEECCCEEEEETTT-TEEEECC-CCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred EEEEcCCCCCcccccEEEECCCC-CeEeECC-CCCccccceEEEEE--CCE-EEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 55665533 4688899876 4554321 11111111122222 344 77777764 46889998763211
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEeCC-----CCEEEEeCCCC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLL 353 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs~D-----g~i~iwDlr~~ 353 (358)
+..+........++.+ ++ .+++.|+.+ ..+.+||+.+.
T Consensus 199 ~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 199 ITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp CCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCC
Confidence 1011111111122233 45 788888764 46889998764
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=84.01 E-value=19 Score=31.17 Aligned_cols=102 Identities=10% Similarity=0.145 Sum_probs=52.4
Q ss_pred eEEEEeCC-----CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-----CcEEEEECCCCCCe-
Q 018322 244 RLVTGDCN-----SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-----GHIAIWDTRVGKSA- 312 (358)
Q Consensus 244 ~l~sgs~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-----g~I~iwD~r~~~~~- 312 (358)
+++.|+.+ ..+.+||+.+ ..|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+....
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPER-NEWRMIT-AMNTIRSGAGVCVL--HNC-IYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTT-TEEEECC-CCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred EEEEeCCCCCCcCceEEEEeCCC-CeEeeCC-CCCCccccceEEEE--CCE-EEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 66666544 4688899876 4554321 11111111122233 444 78888765 56899999873211
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEeCC-----CCEEEEeCCCC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLL 353 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs~D-----g~i~iwDlr~~ 353 (358)
+..+.........+.+ ++ .+++.|+.+ ..+.+||+.+.
T Consensus 246 ~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 246 VAPMKHRRSALGITVH--QG-RIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCCCCccceEEEEE--CC-EEEEEcCcCCCcccceEEEEcCCCC
Confidence 1111111111122222 45 788888754 35788888764
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.83 E-value=22 Score=30.53 Aligned_cols=94 Identities=12% Similarity=0.170 Sum_probs=47.8
Q ss_pred CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-----CcEEEEECCCCCCe-eEEEecCCCCeEE
Q 018322 252 SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-----GHIAIWDTRVGKSA-LTSFKAHNADVNV 325 (358)
Q Consensus 252 g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-----g~I~iwD~r~~~~~-~~~~~~h~~~V~~ 325 (358)
..+.+||+.+ ..|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+.... +..+........+
T Consensus 169 ~~~~~yd~~~-~~W~~~~-~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 169 NSCEVYDPAT-ETWTELC-PMIEARKNHGLVFV--KDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp CCEEEEETTT-TEEEEEC-CCSSCCBSCEEEEE--TTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred ceEEEeCCCC-CeEEECC-CccchhhcceEEEE--CCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 4588999876 4554321 11111111112222 444 77777654 46889998873211 1111111111222
Q ss_pred EEEeCCCCcEEEEEeCC-----CCEEEEeCCCC
Q 018322 326 ISWNRLASCLLASGSDD-----GTFSIHDLRLL 353 (358)
Q Consensus 326 i~~~p~~~~~lasgs~D-----g~i~iwDlr~~ 353 (358)
+.+ ++ .+++.|+.+ ..+.+||+.+.
T Consensus 244 ~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 244 AAV--GS-IVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEE--TT-EEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEE--CC-EEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 333 45 788888854 46888998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 358 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.004 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.003 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.002 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.004 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.9 bits (159), Expect = 1e-12
Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 27/186 (14%)
Query: 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
++ + + S A ++WD+R
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---------------------GMCRQ 220
Query: 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283
F GH+ + AI + P TG ++ L++ A + + +
Sbjct: 221 TFTGHESDINAICFFP-NGNAFATGSDDATCRLFDL--RADQELMTYSHDNIICGITSVS 277
Query: 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDG 343
+S + + + D + +WD H+ V+ + +A+GS D
Sbjct: 278 FSKSG-RLLLAGYDDFNCNVWDALKADR-AGVLAGHDNRVSCLGVTD-DGMAVATGSWDS 334
Query: 344 TFSIHD 349
I +
Sbjct: 335 FLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.7 bits (104), Expect = 7e-06
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS 296
T V+G C++ LW D + F GH + + + + P + FA+ S
Sbjct: 191 SLAPDTRLFVSGACDASAKLW----DVREGMCRQTFTGHESDINAICFFPNG-NAFATGS 245
Query: 297 VDGHIAI-WDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351
D + + S + +S+++ + LL +G DD ++ D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDAL 300
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.8 bits (143), Expect = 1e-10
Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 30/201 (14%)
Query: 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
+ V + + A+ + V+VWD + G S
Sbjct: 203 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--------------GFLVERLDSENE 248
Query: 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPAS--------DATWNVDPNPFIGH 275
GHKD Y++ + +V+G + + LW + +IGH
Sbjct: 249 SGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASC- 334
V + + + + S S D + WD + G L + H V ++ +S
Sbjct: 308 KDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLG 365
Query: 335 ----LLASGSDDGTFSIHDLR 351
+ A+GS D I +
Sbjct: 366 PEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 2/114 (1%)
Query: 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVF 292
+ +D + + + N L+ PA +V+ + + H++ V +++S +
Sbjct: 19 FLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG-EYL 77
Query: 293 ASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFS 346
A+ + ++ G A+ + + N +S FS
Sbjct: 78 ATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.6 bits (140), Expect = 2e-10
Identities = 29/192 (15%), Positives = 68/192 (35%), Gaps = 9/192 (4%)
Query: 158 QLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVS 217
++ R+ Q+ + AS ++ V+VW + + E +S
Sbjct: 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH--RHVVECIS 192
Query: 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSA 277
+ G + L++G + I +W+ ++ +GH
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT----LVGHDN 248
Query: 278 SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLA 337
V + + SC+ D + +WD + + + + AH V + +++ + +
Sbjct: 249 WVRGVLFHSGG-KFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHK-TAPYVV 305
Query: 338 SGSDDGTFSIHD 349
+GS D T + +
Sbjct: 306 TGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.7 bits (109), Expect = 2e-06
Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 18/153 (11%)
Query: 214 PQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPAS------------ 261
+V + F GH++ + N T + + + + +W A+
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREHRH 186
Query: 262 ---DATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318
+W + + A+ + + S S S D I +WD G L +
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVG 245
Query: 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351
H+ V + ++ + S +DD T + D +
Sbjct: 246 HDNWVRGVLFHS-GGKFILSCADDKTLRVWDYK 277
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.7 bits (104), Expect = 9e-06
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 264 TWNVDPNP---FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320
W P GH + V + + P V S S D I +WD G + K H
Sbjct: 2 EWIPRPPEKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDF-ERTLKGHT 59
Query: 321 ADVNVISWN 329
V IS++
Sbjct: 60 DSVQDISFD 68
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.3 bits (82), Expect = 0.004
Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 8/131 (6%)
Query: 221 PLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVE 280
GH+ + ++P +V+ ++ I +W+ + GH+ SV+
Sbjct: 9 EKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERT----LKGHTDSVQ 63
Query: 281 DLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGS 340
D+ + + + + + HN I N + S S
Sbjct: 64 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN---GDHIVSAS 120
Query: 341 DDGTFSIHDLR 351
D T + +++
Sbjct: 121 RDKTIKMWEVQ 131
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (122), Expect = 5e-08
Identities = 30/184 (16%), Positives = 60/184 (32%), Gaps = 33/184 (17%)
Query: 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK 224
QG NR+ ++ + S + ++VWD+ + + +
Sbjct: 174 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG---------------------NCIHT 212
Query: 225 FGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQW 284
GH+ ++ LV+G+ +S + +W D G + +
Sbjct: 213 LTGHQSLTSGMELKD---NILVSGNADSTVKIW----DIKTGQCLQTLQGPNKHQSAVTC 265
Query: 285 SPTEPDVFASCSVDGHIAIWDTRVGKSALT----SFKAHNADVNVISWNRLASCLLASGS 340
+ + S DG + +WD + G+ V I + + A GS
Sbjct: 266 LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGS 324
Query: 341 DDGT 344
+GT
Sbjct: 325 RNGT 328
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 8e-05
Identities = 27/136 (19%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 216 VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH 275
++ L GH + Y++ ++ I +V+G ++ I +W D + GH
Sbjct: 164 PETETCLHTLQGHTNRVYSLQFDGI---HVVSGSLDTSIRVW----DVETGNCIHTLTGH 216
Query: 276 SASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
+ ++ ++ S + D + IWD + G+ L + + N + ++ +
Sbjct: 217 QSLTSGMELKD---NILVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNKNF 272
Query: 336 LASGSDDGTFSIHDLR 351
+ + SDDGT + DL+
Sbjct: 273 VITSSDDGTVKLWDLK 288
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 1e-07
Identities = 22/187 (11%), Positives = 53/187 (28%), Gaps = 10/187 (5%)
Query: 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
N N + + S+ + + + +
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283
+ + +++ + P V + ++ L D H + V L+
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH------VNKPDKYQLHLHESCVLSLK 272
Query: 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDG 343
++ F S D + W T G S S ++ V + + +GS D
Sbjct: 273 FAYCG-KWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISV-DDKYIVTGSGDK 328
Query: 344 TFSIHDL 350
+++++
Sbjct: 329 KATVYEV 335
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 8e-07
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 3/101 (2%)
Query: 250 CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309
N F H ++ + ++ S S + I++ R G
Sbjct: 255 FLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 313
Query: 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350
K + + +++ L+A+ DG + L
Sbjct: 314 KLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.0 bits (94), Expect = 1e-04
Identities = 22/172 (12%), Positives = 49/172 (28%), Gaps = 28/172 (16%)
Query: 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
H V I + + + AD ++V+D + + L+
Sbjct: 11 HMTSV--ITCLQFEDNYVITGADDKMIRVYDSIN---------------------KKFLL 47
Query: 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283
+ GH +A+ + G LV+G + + +W+ +V
Sbjct: 48 QLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV---RCLDI 102
Query: 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCL 335
+ S D + +W S + H+ + + +
Sbjct: 103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 8e-04
Identities = 20/126 (15%), Positives = 42/126 (33%), Gaps = 10/126 (7%)
Query: 227 GHKDEGY-AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS 285
GH + + ++TG + I +++ + GH V L+++
Sbjct: 10 GHMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQ----LSGHDGGVWALKYA 62
Query: 286 PTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTF 345
+ S S D + +WD + G ++ + + +GS D T
Sbjct: 63 HG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120
Query: 346 SIHDLR 351
+ L
Sbjct: 121 HVWKLP 126
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.9 bits (112), Expect = 9e-07
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 275 HSASVE---DLQWSPTEPDVFASCSVDGHIAIWDTRVGK-SALTSFKAHNADVNVISWNR 330
HS VE W+ A C + + I++ K + K HN V + W
Sbjct: 3 HSFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61
Query: 331 LASCLLASGSDDGTFSIHD 349
S + + D +
Sbjct: 62 -DSNRIVTCGTDRNAYVWT 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.6 bits (106), Expect = 4e-06
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 4/118 (3%)
Query: 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVF 292
WN T ++ N ++++E + + V H+ V + W+P +
Sbjct: 11 SCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE--LKEHNGQVTGVDWAPDS-NRI 66
Query: 293 ASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350
+C D + +W + T A GS SI
Sbjct: 67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 6e-04
Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 19/163 (11%)
Query: 173 AMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG 232
+ N A + V + D + + + A +S LV GH
Sbjct: 208 CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV-AAGHDCFP 266
Query: 233 YAIDWNPITTGRLVTGDCNS-------------CIYLWEPASDATWNVDPNPFI--GHSA 277
++ G + + + + + + H
Sbjct: 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN 326
Query: 278 SVEDLQWSP---TEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317
SV + + F + +DG ++IWD R +SAL K
Sbjct: 327 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLK 369
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 36.8 bits (83), Expect = 0.003
Identities = 30/192 (15%), Positives = 47/192 (24%), Gaps = 27/192 (14%)
Query: 164 HQGCVNRIRAMTQNP--HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSP 221
H V I N A + V +++ +
Sbjct: 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG-------------------NKWVQ 43
Query: 222 LVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVED 281
+ + H + +DW P + R+VT + Y+W P I
Sbjct: 44 VHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTL---KGRTWKPTLVILRINRAAR 99
Query: 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVIS--WNRLASCLLASG 339
FA S I+I + + S LLA+G
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159
Query: 340 SDDGTFSIHDLR 351
S D I
Sbjct: 160 SCDFKCRIFSAY 171
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 8/77 (10%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK--SALTSFKAHNADVNVISWNRL 331
+ D++ P++ + S DG + ++ + L + + ++
Sbjct: 9 APKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 332 ASCLLASGSDDGTFSIH 348
+ G+ G
Sbjct: 68 TDLQIYVGTVQGEILKV 84
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP 286
KD I P + L+ + + +++ A NVD + + + +
Sbjct: 9 APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAK-NVDLLQSLRYKHPLLCCNFID 66
Query: 287 TEPDVFASCSVDGHIAIWDTR 307
+V G I D
Sbjct: 67 NTDLQIYVGTVQGEILKVDLI 87
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 5e-04
Identities = 27/186 (14%), Positives = 50/186 (26%), Gaps = 11/186 (5%)
Query: 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
+ N+I M N + VQ + L E G
Sbjct: 146 NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC-------EDDNGTIEESGLKYQIRD 198
Query: 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283
K++ + + D Y + + V ++
Sbjct: 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258
Query: 284 WSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDG 343
+SP + DG I+ W+ + K K + V I+ + +L + D
Sbjct: 259 FSPR-HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS---DNILCLATSDD 314
Query: 344 TFSIHD 349
TF +
Sbjct: 315 TFKTNA 320
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 1e-06
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 14/89 (15%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-----------ALTSFKAHNAD 322
H A + + SCS DG++ +WD ++ + S H
Sbjct: 12 AHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 323 VNVISWNRLASCLLASGSDDGTFSIHDLR 351
+ I + CL+A+ S G + +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRIT 97
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 19/145 (13%), Positives = 41/145 (28%), Gaps = 24/145 (16%)
Query: 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPF--------IGHSAS 278
H + +++ V+ + + +W+ N + + H
Sbjct: 12 AHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVG---------KSALTSFKAHNADVNVISW- 328
++ ++ E + A+ S G + + K L + W
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 329 ---NRLASCLLASGSDDGTFSIHDL 350
+RL S L + GT I
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKF 153
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 3e-04
Identities = 29/211 (13%), Positives = 59/211 (27%), Gaps = 37/211 (17%)
Query: 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222
AH I +++ S + G+++VWD + N + ++
Sbjct: 12 AHDA---DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS------- 61
Query: 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDA------TWNVDPNPFIGHS 276
H D AI+ + + T + + + + +D
Sbjct: 62 --GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKK 119
Query: 277 ASVEDLQWSPTEP----DVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLA 332
S L+W + + V G IW S + + + +
Sbjct: 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 179
Query: 333 SC---------------LLASGSDDGTFSIH 348
L+A+G ++GT I
Sbjct: 180 PMTPSQFATSVDISERGLIATGFNNGTVQIS 210
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.1 bits (84), Expect = 0.002
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 2/103 (1%)
Query: 249 DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308
+ + + + HS+ V L ++ + S DG + WD +
Sbjct: 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVKT 320
Query: 309 GKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351
+ +T+ H D+ + S ++ G F + L+
Sbjct: 321 KE-RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 362
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 1e-06
Identities = 22/185 (11%), Positives = 53/185 (28%), Gaps = 3/185 (1%)
Query: 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG 226
++ + S + + ++V P +
Sbjct: 143 FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH 202
Query: 227 GHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSP 286
++++P + ++T + I ++ S + + L W
Sbjct: 203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 262
Query: 287 TEPDVFASCSVDGHIAIWDTRVGKSALT-SFKAHNADVNVISWNRLASCLLASGSDDGTF 345
++ FA+ D I +WD K + + + + S S DGT
Sbjct: 263 SQ--KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 320
Query: 346 SIHDL 350
+ ++L
Sbjct: 321 NFYEL 325
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (109), Expect = 2e-06
Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 18/130 (13%)
Query: 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT 287
I +V+G ++ I LW+ A V +
Sbjct: 174 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV-------RCIRF 226
Query: 288 EPDVFASCSVDGHIAIWDTR--------VGKSALTSFKAHNADVNVISWNRLASCLLASG 339
+ S + DG I +WD G L + H+ V + ++ + S
Sbjct: 227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSS 283
Query: 340 SDDGTFSIHD 349
S D T I D
Sbjct: 284 SHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (102), Expect = 1e-05
Identities = 22/147 (14%), Positives = 39/147 (26%), Gaps = 32/147 (21%)
Query: 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
G I + + S + +++WD+
Sbjct: 174 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG------------------------A 209
Query: 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNP-----FIGHSAS 278
+ + R+V+G + I +W+ + + HS
Sbjct: 210 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 269
Query: 279 VEDLQWSPTEPDVFASCSVDGHIAIWD 305
V LQ+ S S D I IWD
Sbjct: 270 VFRLQFDEF---QIVSSSHDDTILIWD 293
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.7 bits (106), Expect = 3e-06
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 274 GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
GH+ ++ L S S +GHI WD G S H + I
Sbjct: 10 GHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (86), Expect = 0.001
Identities = 10/103 (9%), Positives = 27/103 (26%), Gaps = 4/103 (3%)
Query: 250 CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309
+ + + + + + + A+ S+D + +W+
Sbjct: 197 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 256
Query: 310 KSALTSFKA--HNADVNVISWNRLASCLLASGSDDGTFSIHDL 350
K + VN + W + S D ++
Sbjct: 257 SDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAGQDSNIKFWNV 297
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.6 bits (103), Expect = 8e-06
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
Query: 265 WNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVN 324
+ I + + E D+ A+ S+D +I I+ + + + AH VN
Sbjct: 203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN 262
Query: 325 VISWNRLASCLLASGSDDGTFSIHD 349
+ W L S D +
Sbjct: 263 NLLWET--PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 0.001
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 272 FIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWN 329
GH+ + L +P S S DG I W + + + H+ + + +
Sbjct: 9 ISGHNKGITALTVNP-----LISGSYDGRIMEWSSS------SMHQDHSNLIVSLDNS 55
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.3 bits (92), Expect = 2e-04
Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 3/107 (2%)
Query: 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD--VFASCSVDGHIAI 303
+ + I L+ V + + + A + PD AS S D I I
Sbjct: 205 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 264
Query: 304 WDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350
W+ K + + L S S +G + +
Sbjct: 265 WNVATLK-VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.001
Identities = 15/140 (10%), Positives = 37/140 (26%), Gaps = 6/140 (4%)
Query: 172 RAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDE 231
A +Q TG + DL S + + + + + +
Sbjct: 200 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA 259
Query: 232 GYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPT-EPD 290
I + + + + + ++ + S +P
Sbjct: 260 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK-----FEMGHEIDSINVSQDEKPL 314
Query: 291 VFASCSVDGHIAIWDTRVGK 310
++A + D + I D G+
Sbjct: 315 LYALSTGDKTLYIHDAESGE 334
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 36.4 bits (82), Expect = 0.004
Identities = 15/189 (7%), Positives = 34/189 (17%), Gaps = 23/189 (12%)
Query: 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223
+ + A + + D S
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV--------------VLNFSFEVVSKPF 221
Query: 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQ 283
P + G+ + + D I +S+
Sbjct: 222 VIPLIPGSPNPTKLVP-RSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 280
Query: 284 WSPTEPD--VFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD 341
+ G + +D + K ++ + + + D
Sbjct: 281 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-----TEVKNNLTDLRLSA-DRKTVMVRKD 334
Query: 342 DGTFSIHDL 350
DG L
Sbjct: 335 DGKIYTFPL 343
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.96 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.93 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.93 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.93 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.92 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.92 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.92 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.91 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.91 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.91 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.9 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.9 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.88 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.87 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.86 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.85 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.85 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.85 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.84 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.84 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.83 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.82 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.82 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.78 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.74 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.59 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.56 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.55 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.55 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.49 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.48 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.47 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.45 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.36 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.3 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.28 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.13 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.02 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.01 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.95 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.88 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.68 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.53 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.51 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.45 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.41 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.41 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.32 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.21 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.15 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.1 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.07 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.93 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.81 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.79 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.77 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.76 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.72 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.29 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.21 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.14 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.08 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.84 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.8 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.52 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.06 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.03 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.67 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.13 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.11 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.04 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 93.39 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 92.76 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 91.52 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 90.37 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 89.74 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 89.35 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 87.8 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 86.72 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 84.95 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=3.5e-27 Score=213.52 Aligned_cols=205 Identities=20% Similarity=0.301 Sum_probs=169.4
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-+..++.|.|++ .+|++|+ .++.|.||++..
T Consensus 58 ~~~v~~~~~sp~g-----------~~latg~-----~dg~i~iwd~~~-------------------------------- 89 (311)
T d1nr0a1 58 SHQTTVAKTSPSG-----------YYCASGD-----VHGNVRIWDTTQ-------------------------------- 89 (311)
T ss_dssp SSCEEEEEECTTS-----------SEEEEEE-----TTSEEEEEESSS--------------------------------
T ss_pred CCCEEEEEEeCCC-----------CeEeccc-----cCceEeeeeeec--------------------------------
Confidence 4678899998885 5888888 467999998741
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeC--CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcE
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWAD--TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV 223 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (358)
....+...+..|.+.|++++|+|++ .+|++++. +..++||++.. .++..
T Consensus 90 -------~~~~~~~~~~~~~~~v~~v~~s~d~-~~l~~~~~~~~~~~~v~~~~~---------------------~~~~~ 140 (311)
T d1nr0a1 90 -------TTHILKTTIPVFSGPVKDISWDSES-KRIAAVGEGRERFGHVFLFDT---------------------GTSNG 140 (311)
T ss_dssp -------TTCCEEEEEECSSSCEEEEEECTTS-CEEEEEECCSSCSEEEEETTT---------------------CCBCB
T ss_pred -------cccccccccccccCccccccccccc-ccccccccccccccccccccc---------------------ccccc
Confidence 1334445677899999999999999 67777765 45699999986 45566
Q ss_pred EEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 224 KFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 224 ~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
.+.+|...|++++|+|++...|++|+.||.|++||+++.. . ...+..|...|+++.|+|++. +|++|+.|+.|++
T Consensus 141 ~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~-~---~~~~~~~~~~i~~v~~~p~~~-~l~~~~~d~~v~~ 215 (311)
T d1nr0a1 141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-F---KSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVL 215 (311)
T ss_dssp CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-E---EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEE
T ss_pred cccccccccccccccccceeeecccccccccccccccccc-c---ccccccccccccccccCcccc-ccccccccccccc
Confidence 7889999999999999988568999999999999998732 2 245678999999999999998 9999999999999
Q ss_pred EECCCCCCeeEEE-------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 304 WDTRVGKSALTSF-------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 304 wD~r~~~~~~~~~-------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
||++.+. .+..+ .+|...|++++|+|++ .+|++|+.||+|+|||+++++
T Consensus 216 ~d~~~~~-~~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~l~tgs~Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 216 YNGVDGT-KTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLK 271 (311)
T ss_dssp EETTTCC-EEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE
T ss_pred ccccccc-ccccccccccccccccccccccccCCCC-CEEEEEeCCCeEEEEECCCCc
Confidence 9999853 33333 4688999999999999 899999999999999998765
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=2.2e-27 Score=219.59 Aligned_cols=216 Identities=15% Similarity=0.203 Sum_probs=172.9
Q ss_pred hhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCC
Q 018322 60 LHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSD 139 (358)
Q Consensus 60 ~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (358)
+|.|.. =|..++.|-||+ .+|++|+ .++.|.||++..
T Consensus 2 ~~~~~~-~pIt~~~~s~dg-----------~~la~~~-----~~~~i~iw~~~~-------------------------- 38 (371)
T d1k8kc_ 2 YHSFLV-EPISCHAWNKDR-----------TQIAICP-----NNHEVHIYEKSG-------------------------- 38 (371)
T ss_dssp EEESCS-SCCCEEEECTTS-----------SEEEEEC-----SSSEEEEEEEET--------------------------
T ss_pred cCCCCC-CCeEEEEECCCC-----------CEEEEEe-----CCCEEEEEECCC--------------------------
Confidence 355544 456678888885 3677776 456899998841
Q ss_pred CCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCC
Q 018322 140 SDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQ 219 (358)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (358)
.+......+.+|.++|++|.|+|++ .+||+|+.|++|+|||+... ..
T Consensus 39 -------------~~~~~~~~l~gH~~~V~~l~fsp~~-~~l~s~s~D~~i~vWd~~~~-------------------~~ 85 (371)
T d1k8kc_ 39 -------------NKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGR-------------------TW 85 (371)
T ss_dssp -------------TEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETT-------------------EE
T ss_pred -------------CCEEEEEEecCCCCCEEEEEECCCC-CEEEEEECCCeEEEEeeccc-------------------cc
Confidence 1334445677999999999999998 79999999999999998752 12
Q ss_pred CCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCC
Q 018322 220 SPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 220 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (358)
.+...+.+|...+++++|+|++. +|++|+.|++|++|++...............|...|.+++|+|++. +|++|+.|+
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~-~l~s~s~D~ 163 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDF 163 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTS
T ss_pred ccccccccccccccccccccccc-cceeecccCcceeeeeeccccccccccccccccccccccccccccc-ceeccccCc
Confidence 44556778899999999999998 9999999999999998765443322334556889999999999998 999999999
Q ss_pred cEEEEECCCCC-----------------CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 300 HIAIWDTRVGK-----------------SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 300 ~I~iwD~r~~~-----------------~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+|++||++... ..+.....|...|++++|+|++ .+|++|+.||.|++||+++.+
T Consensus 164 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~d~~i~iwd~~~~~ 234 (371)
T d1k8kc_ 164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKM 234 (371)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTT
T ss_pred EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc-ccccccccCCcceEEeeeccc
Confidence 99999986521 1344557889999999999999 899999999999999997654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=1.8e-26 Score=207.96 Aligned_cols=220 Identities=13% Similarity=0.118 Sum_probs=171.8
Q ss_pred cCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 018322 66 GWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSD 145 (358)
Q Consensus 66 ~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (358)
.-|..++.|.|++ .+|+.|+ .++.|.||++.
T Consensus 55 ~~~I~~l~~s~~~-----------~~l~sgs-----~Dg~v~iWd~~--------------------------------- 85 (340)
T d1tbga_ 55 LAKIYAMHWGTDS-----------RLLVSAS-----QDGKLIIWDSY--------------------------------- 85 (340)
T ss_dssp SSCEEEEEECTTS-----------SEEEEEE-----TTTEEEEEETT---------------------------------
T ss_pred CCCEEEEEECCCC-----------CEEEEEE-----CCCceeeeecc---------------------------------
Confidence 4577888998875 4888887 46699999873
Q ss_pred CccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccc----------------
Q 018322 146 DDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIV---------------- 209 (358)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~---------------- 209 (358)
.......+..|.+.|++++|+|++ .++++|+.|+.|++|+...............
T Consensus 86 --------~~~~~~~~~~~~~~v~~v~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (340)
T d1tbga_ 86 --------TTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156 (340)
T ss_dssp --------TTEEEEEEECSCSCEEEEEECTTS-SEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTE
T ss_pred --------cceeEEEEecccccEEeeEeeccc-eeeeeecccceeecccccccccccccceecccccccccccccccccc
Confidence 233445667899999999999999 7999999999999999765322111000000
Q ss_pred ------------c------------CC-----------CC---------------CCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 210 ------------G------------QG-----------AP---------------QVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 210 ------------~------------~~-----------~~---------------~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
. .. .. ......++..+.+|...|++++|+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p 236 (340)
T d1tbga_ 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236 (340)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred cccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECC
Confidence 0 00 00 0023455667889999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
++. +|++|+.||.|++|+++...... ......|...|.+++|+|++. +|++|+.||.|+|||++++ .++..+.+|
T Consensus 237 ~~~-~l~s~s~d~~i~~~~~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~-~l~~g~~dg~i~iwd~~~~-~~~~~~~~H 311 (340)
T d1tbga_ 237 NGN-AFATGSDDATCRLFDLRADQELM--TYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKA-DRAGVLAGH 311 (340)
T ss_dssp TSS-EEEEEETTSCEEEEETTTTEEEE--EECCTTCCSCEEEEEECSSSC-EEEEEETTSCEEEEETTTC-CEEEEECCC
T ss_pred CCC-EEEEEeCCCeEEEEeeccccccc--ccccccccCceEEEEECCCCC-EEEEEECCCEEEEEECCCC-cEEEEEcCC
Confidence 998 99999999999999998743322 123345678899999999998 9999999999999999985 588889999
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
...|++|+|+|++ .+|+||+.||+|+|||
T Consensus 312 ~~~V~~l~~s~d~-~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 312 DNRVSCLGVTDDG-MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEEECTTS-SCEEEEETTSCEEEEC
T ss_pred CCCEEEEEEeCCC-CEEEEEccCCEEEEeC
Confidence 9999999999999 8999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=4.3e-26 Score=206.25 Aligned_cols=168 Identities=17% Similarity=0.218 Sum_probs=145.8
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
.+.+|.+.|++++|+|++ .+||+|+.||+|+|||+... .......+.+|...|.+++|+|
T Consensus 53 ~~~~H~~~v~~~~~sp~g-~~latg~~dg~i~iwd~~~~-------------------~~~~~~~~~~~~~~v~~v~~s~ 112 (311)
T d1nr0a1 53 IYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQT-------------------THILKTTIPVFSGPVKDISWDS 112 (311)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSST-------------------TCCEEEEEECSSSCEEEEEECT
T ss_pred EEcCCCCCEEEEEEeCCC-CeEeccccCceEeeeeeecc-------------------ccccccccccccCccccccccc
Confidence 456899999999999998 79999999999999999872 1223356788999999999999
Q ss_pred CCCCeEEEEeC--CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEe
Q 018322 240 ITTGRLVTGDC--NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFK 317 (358)
Q Consensus 240 ~~~~~l~sgs~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~ 317 (358)
++. +|++++. +..+++|++.+... ...+.+|...|++++|+|+++.+|++|+.||.|++||+++. .....+.
T Consensus 113 d~~-~l~~~~~~~~~~~~v~~~~~~~~----~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~-~~~~~~~ 186 (311)
T d1nr0a1 113 ESK-RIAAVGEGRERFGHVFLFDTGTS----NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFG 186 (311)
T ss_dssp TSC-EEEEEECCSSCSEEEEETTTCCB----CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEEC
T ss_pred ccc-ccccccccccccccccccccccc----cccccccccccccccccccceeeeccccccccccccccccc-ccccccc
Confidence 998 8888875 45699999977432 35678899999999999999878999999999999999984 5777788
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.|...|+++.|+|++ .+|++|+.||.|++||+++..
T Consensus 187 ~~~~~i~~v~~~p~~-~~l~~~~~d~~v~~~d~~~~~ 222 (311)
T d1nr0a1 187 EHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGT 222 (311)
T ss_dssp CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC
T ss_pred cccccccccccCccc-ccccccccccccccccccccc
Confidence 999999999999999 899999999999999998754
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=1.1e-24 Score=193.04 Aligned_cols=164 Identities=20% Similarity=0.383 Sum_probs=145.0
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
....+.+|...+.++.|+|++ .+|++++.||.|++|++.. ......+.+|...+.+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~---------------------~~~~~~~~~~~~~i~~~~ 192 (317)
T d1vyhc1 135 CVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVAT---------------------KECKAELREHRHVVECIS 192 (317)
T ss_dssp EEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEEEE
T ss_pred eeeEEccCCCcceeeecccCC-CEEEEEeCCCeEEEEeecc---------------------ceeeEEEecCCCCceEEE
Confidence 345667899999999999998 7999999999999999987 566778888999999999
Q ss_pred eCCCCC-------------------CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 237 WNPITT-------------------GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 237 ~s~~~~-------------------~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
|+|... .++++|+.|+.|++|+++++ ... ..+.+|...|.+++|+|++. +|++|+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~---~~~~~~~~~v~~~~~~~~~~-~l~s~~~ 267 (317)
T d1vyhc1 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCL---MTLVGHDNWVRGVLFHSGGK-FILSCAD 267 (317)
T ss_dssp ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEE---EEEECCSSCEEEEEECSSSS-CEEEEET
T ss_pred EeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC-cEE---EEEeCCCCCEEEEEECCCCC-EEEEEEC
Confidence 987642 16899999999999999873 332 56788999999999999998 9999999
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEe
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
||.|+|||++++ .++..+.+|...|++++|+|++ .+|+||+.||+|+|||
T Consensus 268 dg~i~iwd~~~~-~~~~~~~~h~~~V~~~~~s~~~-~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 268 DKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWE 317 (317)
T ss_dssp TTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSS-SCEEEEETTSEEEEEC
T ss_pred CCeEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEeC
Confidence 999999999985 5788899999999999999999 8999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.1e-24 Score=194.50 Aligned_cols=201 Identities=16% Similarity=0.260 Sum_probs=168.7
Q ss_pred cceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 018322 68 PCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDD 147 (358)
Q Consensus 68 P~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (358)
+..++.|.|++ .+|++|+ .++.|.||++..
T Consensus 99 ~I~~v~~s~dg-----------~~l~s~~-----~dg~i~iwd~~~---------------------------------- 128 (337)
T d1gxra_ 99 YIRSCKLLPDG-----------CTLIVGG-----EASTLSIWDLAA---------------------------------- 128 (337)
T ss_dssp BEEEEEECTTS-----------SEEEEEE-----SSSEEEEEECCC----------------------------------
T ss_pred cEEEEEEcCCC-----------CEEEEee-----cccccccccccc----------------------------------
Confidence 45678888874 4778777 456899998731
Q ss_pred cCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC
Q 018322 148 EEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG 227 (358)
Q Consensus 148 ~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (358)
..+.+......|...|.++.|+|++ .++++++.++.|++|++.. ..+.....+
T Consensus 129 -----~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~~~~~~~---------------------~~~~~~~~~ 181 (337)
T d1gxra_ 129 -----PTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHN---------------------QTLVRQFQG 181 (337)
T ss_dssp -----C--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECC
T ss_pred -----ccccccccccccccccccccccccc-ccccccccccccccccccc---------------------ccccccccc
Confidence 1445566778899999999999988 7999999999999999987 456677888
Q ss_pred CCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 228 HKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
|...+++++|++++. ++++|+.|+.|++||++++.. . ....|...|.+++|+|++. +|++++.|+.|++||++
T Consensus 182 ~~~~v~~l~~s~~~~-~~~~~~~d~~v~i~d~~~~~~-~----~~~~~~~~i~~l~~~~~~~-~l~~~~~d~~i~i~d~~ 254 (337)
T d1gxra_ 182 HTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQ-L----QQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVN 254 (337)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE-E----EEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEETT
T ss_pred ccccccccccccccc-cccccccccccccccccccee-e----cccccccceEEEEEccccc-ccceecccccccccccc
Confidence 999999999999998 999999999999999987432 1 2335789999999999998 99999999999999999
Q ss_pred CCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 308 VGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 308 ~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+. ......|...|++++|+|++ .+|++|+.||.|++||+.+.+.
T Consensus 255 ~~~--~~~~~~~~~~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~~~~~~ 299 (337)
T d1gxra_ 255 KPD--KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp SSC--EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCE
T ss_pred ccc--cccccccccccceEEECCCC-CEEEEEeCCCeEEEEECCCCCE
Confidence 843 34567899999999999999 8999999999999999987653
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.1e-24 Score=193.87 Aligned_cols=215 Identities=14% Similarity=0.255 Sum_probs=175.2
Q ss_pred HhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCC
Q 018322 58 NSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSES 137 (358)
Q Consensus 58 ~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 137 (358)
..+|+....-+..++.|-|++ .+|++|+ ++.|.||++....
T Consensus 43 ~~~~~~~H~~~V~~v~fs~~g-----------~~latg~------dg~V~iWd~~~~~---------------------- 83 (337)
T d1gxra_ 43 RQINTLNHGEVVCAVTISNPT-----------RHVYTGG------KGCVKVWDISHPG---------------------- 83 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSS-----------SEEEEEC------BSEEEEEETTSTT----------------------
T ss_pred eEEEECCCCCcEEEEEECCCC-----------CEEEEEE------CCEEEEEEccCCc----------------------
Confidence 445666667888899998885 4787775 2479999884210
Q ss_pred CCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCC
Q 018322 138 SDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVS 217 (358)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~ 217 (358)
...+........|.+.|++++|+|++ .+|++|+.||+|++||+...
T Consensus 84 --------------~~~~~~~~~~~~h~~~I~~v~~s~dg-~~l~s~~~dg~i~iwd~~~~------------------- 129 (337)
T d1gxra_ 84 --------------NKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAP------------------- 129 (337)
T ss_dssp --------------CCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC-------------------
T ss_pred --------------ccceeEEeeecCCCCcEEEEEEcCCC-CEEEEeeccccccccccccc-------------------
Confidence 01444556677899999999999999 78999999999999998762
Q ss_pred CCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC
Q 018322 218 NQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV 297 (358)
Q Consensus 218 ~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~ 297 (358)
.......+.+|...+.+++|+|++. ++++++.++.|++|++.+... . ....+|...|.+++|++++. .+++|+.
T Consensus 130 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~-~---~~~~~~~~~v~~l~~s~~~~-~~~~~~~ 203 (337)
T d1gxra_ 130 TPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTL-V---RQFQGHTDGASCIDISNDGT-KLWTGGL 203 (337)
T ss_dssp --EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE-E---EEECCCSSCEEEEEECTTSS-EEEEEET
T ss_pred ccccccccccccccccccccccccc-ccccccccccccccccccccc-c---cccccccccccccccccccc-ccccccc
Confidence 1234456788999999999999998 999999999999999987432 2 45667899999999999998 9999999
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|+.|++||++++ ..+.. ..|...|++++|+|++ .+|++|+.||.|++||+++.+
T Consensus 204 d~~v~i~d~~~~-~~~~~-~~~~~~i~~l~~~~~~-~~l~~~~~d~~i~i~d~~~~~ 257 (337)
T d1gxra_ 204 DNTVRSWDLREG-RQLQQ-HDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPD 257 (337)
T ss_dssp TSEEEEEETTTT-EEEEE-EECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSC
T ss_pred cccccccccccc-eeecc-cccccceEEEEEcccc-cccceeccccccccccccccc
Confidence 999999999985 34443 4588899999999999 899999999999999998765
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.3e-23 Score=190.59 Aligned_cols=171 Identities=14% Similarity=0.120 Sum_probs=139.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEe--CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWA--DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
.....|.++|+++.|++++. .+++++ .++.+++|+... .+.+..+.+|...+.+++
T Consensus 109 ~~~~~~~~~v~~v~~s~~~~-~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~h~~~v~~~~ 166 (325)
T d1pgua1 109 SEFQVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWDS---------------------GNSLGEVSGHSQRINACH 166 (325)
T ss_dssp EEEECCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETTT---------------------CCEEEECCSCSSCEEEEE
T ss_pred cccccccCcEEEEEECCCCC-ccceeeccccceEEEEeecc---------------------cccceeeeeccccccccc
Confidence 34567999999999999994 555444 467899999876 567788899999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF 316 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~ 316 (358)
|+|.+..++++++.|+.|++|++... ...........|...|.+++|+|++..+|++|+.||.|++||++++ .++..+
T Consensus 167 ~~~~~~~~~~~~~~d~~v~~~d~~~~-~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~-~~~~~l 244 (325)
T d1pgua1 167 LKQSRPMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYI 244 (325)
T ss_dssp ECSSSSCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEEC
T ss_pred ccccccceEEEeeccccccccccccc-ccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc-cccccc
Confidence 99998756889999999999998663 2222223456788899999999986669999999999999999985 577788
Q ss_pred ecCCCCeEEEEEe---CCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 317 KAHNADVNVISWN---RLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 317 ~~h~~~V~~i~~~---p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+|...+..+.|+ |++ .+|++|+.|+.|+|||+++.+
T Consensus 245 ~~~~~~v~~~~~s~~~~dg-~~l~s~s~D~~i~iwd~~~~~ 284 (325)
T d1pgua1 245 EDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSK 284 (325)
T ss_dssp CBTTBCCCSCEEEEEESSS-SEEEEEETTSEEEEEETTTTE
T ss_pred cccccccccceeeeeccCC-CEEEEEeCCCeEEEEECCCCC
Confidence 8888777655555 567 799999999999999998764
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.1e-24 Score=201.31 Aligned_cols=165 Identities=18% Similarity=0.215 Sum_probs=138.9
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
+..+|+|++|+|++ .+||+|+.+|.|+|||+... ....+..+.+|..+|.+|+|+|++.
T Consensus 6 ~~~pIt~~~~s~dg-~~la~~~~~~~i~iw~~~~~-------------------~~~~~~~l~gH~~~V~~l~fsp~~~- 64 (371)
T d1k8kc_ 6 LVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGN-------------------KWVQVHELKEHNGQVTGVDWAPDSN- 64 (371)
T ss_dssp CSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETT-------------------EEEEEEEEECCSSCEEEEEEETTTT-
T ss_pred CCCCeEEEEECCCC-CEEEEEeCCCEEEEEECCCC-------------------CEEEEEEecCCCCCEEEEEECCCCC-
Confidence 35789999999999 79999999999999998651 1235667889999999999999998
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe---eEEEecCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA---LTSFKAHN 320 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~---~~~~~~h~ 320 (358)
+|++|+.|++|+|||+.+..... ...+.+|...|.+++|+|+++ .|++|+.|+.|++|++...... ......|.
T Consensus 65 ~l~s~s~D~~i~vWd~~~~~~~~--~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~ 141 (371)
T d1k8kc_ 65 RIVTCGTDRNAYVWTLKGRTWKP--TLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIR 141 (371)
T ss_dssp EEEEEETTSCEEEEEEETTEEEE--EEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred EEEEEECCCeEEEEeeccccccc--ccccccccccccccccccccc-cceeecccCcceeeeeecccccccccccccccc
Confidence 99999999999999997632211 234567889999999999998 9999999999999998764432 22236788
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
..|.+++|+|++ .+|++|+.||+|++||++..
T Consensus 142 ~~v~~v~~~p~~-~~l~s~s~D~~v~v~~~~~~ 173 (371)
T d1k8kc_ 142 STVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIK 173 (371)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEECCCT
T ss_pred cccccccccccc-cceeccccCcEEEEEeeccC
Confidence 999999999999 89999999999999998754
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.8e-23 Score=187.91 Aligned_cols=173 Identities=20% Similarity=0.313 Sum_probs=145.6
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
....++.+|.+.|++|+|+|++ .+||||+.||+|+|||+.. ...+..+.+|...|.++
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~-~~l~sgs~Dg~v~iWd~~~---------------------~~~~~~~~~~~~~v~~v 103 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDS-RLLVSASQDGKLIIWDSYT---------------------TNKVHAIPLRSSWVMTC 103 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTT---------------------TEEEEEEECSCSCEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCC-CEEEEEECCCceeeeeccc---------------------ceeEEEEecccccEEee
Confidence 3446688999999999999998 7999999999999999987 56677889999999999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCc-----------------------------------------ccc
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNP-----------------------------------------FIG 274 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~-----------------------------------------~~~ 274 (358)
+|+|++. +|++|+.|+.|++|+............. ...
T Consensus 104 ~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (340)
T d1tbga_ 104 AYAPSGN-YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp EECTTSS-EEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred Eeeccce-eeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999998 9999999999999997653211100000 112
Q ss_pred CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 275 h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+...+..+.+.+... ++++|+.|+.|++||++.+ .++..+.+|...|++++|+|++ .+|++|+.||.|++||++..+
T Consensus 183 ~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~-~~~~~~~~h~~~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~~ 259 (340)
T d1tbga_ 183 HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ 259 (340)
T ss_dssp CSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTT-EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE
T ss_pred cceeEeeeccccccc-eeEEeecCceEEEEECCCC-cEEEEEeCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeecccc
Confidence 445667778888877 9999999999999999985 5788889999999999999999 899999999999999998764
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.5e-23 Score=191.55 Aligned_cols=172 Identities=20% Similarity=0.263 Sum_probs=131.9
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.+.....++.+.+..+.+|++++.||.|++|++........ .........+|...|++++|+|++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~--------------~~~~~~~~~~h~~~v~~l~~s~~~~ 267 (388)
T d1erja_ 202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER--------------LDSENESGTGHKDSVYSVVFTRDGQ 267 (388)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE--------------EC------CCCSSCEEEEEECTTSS
T ss_pred ccccccccccccCCCCCeEEEEcCCCeEEEeecccCcccee--------------eccccccccCCCCCEEEEEECCCCC
Confidence 44555666777776558999999999999999986321110 0122334567899999999999998
Q ss_pred CeEEEEeCCCcEEEEecCCCCCccc--------CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeE
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNV--------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALT 314 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~--------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~ 314 (358)
+|++|+.||.|++||++....... .......|...|.+++|+|++. +|++|+.||.|++||++++ .++.
T Consensus 268 -~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~sg~~dg~i~vwd~~~~-~~~~ 344 (388)
T d1erja_ 268 -SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSGSKDRGVLFWDKKSG-NPLL 344 (388)
T ss_dssp -EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC-EEEEEETTSEEEEEETTTC-CEEE
T ss_pred -EEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC-EEEEEeCCCEEEEEECCCC-cEEE
Confidence 999999999999999976432110 0123456889999999999998 9999999999999999985 5888
Q ss_pred EEecCCCCeEEEEE------eCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 315 SFKAHNADVNVISW------NRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 315 ~~~~h~~~V~~i~~------~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+.+|...|.++++ +|++ .+||||+.||+|+||++++
T Consensus 345 ~l~~H~~~V~~~~~~~~~~~spd~-~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 345 MLQGHRNSVISVAVANGSSLGPEY-NVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp EEECCSSCEEEEEECSSCTTCTTC-EEEEEEETTSEEEEEEEEE
T ss_pred EEeCCCCCEEEEEEecCcccCCCC-CEEEEEeCCCEEEEEeeee
Confidence 89999999999976 5677 8999999999999999864
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.91 E-value=3.4e-23 Score=184.34 Aligned_cols=174 Identities=15% Similarity=0.191 Sum_probs=133.2
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE-cCCCCCeEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-GGHKDEGYA 234 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~ 234 (358)
.+...+.+|.+.|++|+|+|++ .+||||+.||+|+|||+.. .++...+ .+|...|++
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg-~~l~s~s~Dg~v~vWd~~~---------------------~~~~~~~~~~h~~~v~~ 60 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDIST---------------------GISNRVFPDVHATMITG 60 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEECSSCSCSSCEEE
T ss_pred ccceEcCCCCCCcEEEEECCCC-CEEEEEcCCCeEEEEECCC---------------------CcEEEEEcCCCCCcEEE
Confidence 3557788999999999999998 7999999999999999976 3334444 367788888
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCccc-----------------------------------------------
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNV----------------------------------------------- 267 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~----------------------------------------------- 267 (358)
++|+|++. +++++.|+.|++|+.........
T Consensus 61 v~~~~~g~--~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~ 138 (299)
T d1nr0a2 61 IKTTSKGD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYN 138 (299)
T ss_dssp EEECTTSC--EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSC
T ss_pred EEeeccce--eecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88888764 55666688888887643210000
Q ss_pred --------------------------------CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC--ee
Q 018322 268 --------------------------------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS--AL 313 (358)
Q Consensus 268 --------------------------------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~--~~ 313 (358)
.......|...|.+++|+|++. +|++++.|+.|++||++++.. ..
T Consensus 139 ~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~ 217 (299)
T d1nr0a2 139 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA-FLVATDQSRKVIPYSVANNFELAHT 217 (299)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSS-EEEEEETTSCEEEEEGGGTTEESCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 0001125677888999999887 888999999999999876432 22
Q ss_pred EEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 314 TSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 314 ~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
..+..|...|++++|+|++ .+|++|+.||.|+|||+++...
T Consensus 218 ~~~~~h~~~v~~l~~s~~~-~~l~sgs~dg~i~iwd~~~~~~ 258 (299)
T d1nr0a2 218 NSWTFHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKPSD 258 (299)
T ss_dssp CCCCCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCTTS
T ss_pred ccccccccccccccccccc-cceEEEcCCCEEEEEECCCCCc
Confidence 3456789999999999999 9999999999999999987654
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=4.4e-23 Score=182.62 Aligned_cols=166 Identities=21% Similarity=0.310 Sum_probs=150.1
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.+.|++|+|+|++ .+||||+.||+|+|||+.. .+.+..+.+|...|++++|+
T Consensus 11 ~~L~GH~~~I~~l~~sp~~-~~l~s~s~Dg~i~iWd~~~---------------------~~~~~~~~~h~~~V~~~~~~ 68 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYET---------------------GDFERTLKGHTDSVQDISFD 68 (317)
T ss_dssp CEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTT---------------------CCCCEEECCCSSCEEEEEEC
T ss_pred EEEcCCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEECCC---------------------CCEEEEEeCCCCcEEEEeee
Confidence 4577999999999999998 7999999999999999987 57788899999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
|++. +++++..++.+.+|+...... . ..+.+|...+.++.|+|++. .+++++.|+.+++||++++ ..+..+..
T Consensus 69 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~-~~~~~~~~ 141 (317)
T d1vyhc1 69 HSGK-LLASCSADMTIKLWDFQGFEC-I---RTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTG-YCVKTFTG 141 (317)
T ss_dssp TTSS-EEEEEETTSCCCEEETTSSCE-E---ECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTC-CEEEEEEC
T ss_pred cccc-ccccccccccccccccccccc-c---cccccccccceeeeccCCCc-eEEeeccCcceeEeecccc-eeeeEEcc
Confidence 9998 999999999999999876332 2 45677899999999999998 8999999999999999985 57788899
Q ss_pred CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 319 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 319 h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|...+.+++|++++ .+|++|+.||.|++|++++.+
T Consensus 142 ~~~~~~~~~~~~~~-~~l~~~~~d~~v~~~~~~~~~ 176 (317)
T d1vyhc1 142 HREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKE 176 (317)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC
T ss_pred CCCcceeeecccCC-CEEEEEeCCCeEEEEeeccce
Confidence 99999999999999 899999999999999998764
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=3.9e-22 Score=183.44 Aligned_cols=211 Identities=14% Similarity=0.193 Sum_probs=157.5
Q ss_pred ccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 018322 63 FHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDE 142 (358)
Q Consensus 63 ~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (358)
....-+..++.|.|++ .+|++|+ .++.|.+|++.
T Consensus 118 ~~~~~~V~~l~~s~~~-----------~~l~s~~-----~dg~v~i~~~~------------------------------ 151 (388)
T d1erja_ 118 PSSDLYIRSVCFSPDG-----------KFLATGA-----EDRLIRIWDIE------------------------------ 151 (388)
T ss_dssp -CCCCBEEEEEECTTS-----------SEEEEEE-----TTSCEEEEETT------------------------------
T ss_pred cCCCCCEEEEEECCCC-----------Ccceecc-----ccccccccccc------------------------------
Confidence 3344455677887774 4788887 45689998762
Q ss_pred CCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCc
Q 018322 143 DSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPL 222 (358)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (358)
.........+|.+.|+++.+++.+ ..+++++.+|.|++||+.. ....
T Consensus 152 -----------~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~~~~~~~i~~~d~~~---------------------~~~~ 198 (388)
T d1erja_ 152 -----------NRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRT---------------------GQCS 198 (388)
T ss_dssp -----------TTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEE
T ss_pred -----------cccccccccccccccccccccccc-ccccccccceeeeeeeccc---------------------cccc
Confidence 334445677899999999999988 7889999999999999987 2333
Q ss_pred EEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcc---cCCCccccCCCcEEEEEECCCCCCEEEEEECCC
Q 018322 223 VKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN---VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDG 299 (358)
Q Consensus 223 ~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~---~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg 299 (358)
.....+. ...++.|++....+|++|+.||.|++|++.+..... .......+|...|.+++|+|++. +|++|+.||
T Consensus 199 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~d~ 276 (388)
T d1erja_ 199 LTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDR 276 (388)
T ss_dssp EEEECSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS-EEEEEETTS
T ss_pred ccccccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCC-EEEEEECCC
Confidence 4444444 455566665443399999999999999998743211 11233457899999999999998 999999999
Q ss_pred cEEEEECCCCCC-----------eeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 300 HIAIWDTRVGKS-----------ALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 300 ~I~iwD~r~~~~-----------~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.|++||++.... +......|...|++++|+|++ .+|++|+.||.|++||+++++.
T Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~sg~~dg~i~vwd~~~~~~ 342 (388)
T d1erja_ 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSGSKDRGVLFWDKKSGNP 342 (388)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEEETTSEEEEEETTTCCE
T ss_pred cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcE
Confidence 999999986431 334456789999999999999 8999999999999999998753
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=7.9e-23 Score=185.37 Aligned_cols=170 Identities=14% Similarity=0.129 Sum_probs=127.3
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
....+.+|.+.|+++.|+|.++.++++++.||.|++|++..... ......+.+|...|++++
T Consensus 151 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~------------------~~~~~~~~~~~~~v~~v~ 212 (325)
T d1pgua1 151 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF------------------SASDRTHHKQGSFVRDVE 212 (325)
T ss_dssp EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE------------------EEEECSSSCTTCCEEEEE
T ss_pred cceeeeecccccccccccccccceEEEeeccccccccccccccc------------------ceecccccCCCCccEEee
Confidence 33456789999999999999988899999999999999876211 011112346778899999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEEC---CCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWS---PTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~s---p~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
|+|++..+|++|+.||.|++||++++.. . ..+.+|...+.++.|+ |++. +|++|+.|+.|+|||++++ +++
T Consensus 213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~-~---~~l~~~~~~v~~~~~s~~~~dg~-~l~s~s~D~~i~iwd~~~~-~~~ 286 (325)
T d1pgua1 213 FSPDSGEFVITVGSDRKISCFDGKSGEF-L---KYIEDDQEPVQGGIFALSWLDSQ-KFATVGADATIRVWDVTTS-KCV 286 (325)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCE-E---EECCBTTBCCCSCEEEEEESSSS-EEEEEETTSEEEEEETTTT-EEE
T ss_pred eccccceeccccccccceeeeeeccccc-c---ccccccccccccceeeeeccCCC-EEEEEeCCCeEEEEECCCC-CEE
Confidence 9997544899999999999999987432 2 4556666665544444 4566 8999999999999999984 577
Q ss_pred EEEecCCCC--eEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 314 TSFKAHNAD--VNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 314 ~~~~~h~~~--V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
..+..|... +..++|.+.+..+|++|+.||+|+||||
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 287 QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 766655543 3444444433348899999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.90 E-value=2.8e-22 Score=178.27 Aligned_cols=163 Identities=18% Similarity=0.228 Sum_probs=130.6
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.+...+.++.|+|++ .+|++|+.||.|++||+... .........|...|++++|+|++.
T Consensus 134 ~~~~~~~~~~~s~~~-~~l~~g~~dg~i~~~d~~~~--------------------~~~~~~~~~~~~~i~~~~~~~~~~ 192 (299)
T d1nr0a2 134 PISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGA--------------------SVSEVKTIVHPAEITSVAFSNNGA 192 (299)
T ss_dssp ECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETT--------------------EEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccccccccccccc-cccccccccccccccccccc--------------------cccccccccccccccccccccccc
Confidence 355678899999988 79999999999999998762 111223457888999999999998
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCe-eEEEec-CC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSA-LTSFKA-HN 320 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~-~~~~~~-h~ 320 (358)
+|++|+.++.|++||+.+. ........+.+|...|++++|+|++. +|++|+.||.|+|||++.+... +..... +.
T Consensus 193 -~l~~~~~d~~i~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~ 269 (299)
T d1nr0a2 193 -FLVATDQSRKVIPYSVANN-FELAHTNSWTFHTAKVACVSWSPDNV-RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 269 (299)
T ss_dssp -EEEEEETTSCEEEEEGGGT-TEESCCCCCCCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCTTSCCEEETTSSTT
T ss_pred -ccccccccccccccccccc-cccccccccccccccccccccccccc-ceEEEcCCCEEEEEECCCCCcceEEEecCCCC
Confidence 9999999999999999763 33333456778999999999999998 9999999999999999985432 233333 44
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
..|+++.|.+ + .+|+||+.||+|+|||+.
T Consensus 270 ~~v~~~~~~~-~-~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 270 SSVNSVIWLN-E-TTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp SCEEEEEEEE-T-TEEEEEETTSCEEEEECC
T ss_pred CcEEEEEECC-C-CEEEEEeCCCEEEEEecc
Confidence 5677777654 5 589999999999999984
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=2.2e-22 Score=186.99 Aligned_cols=183 Identities=16% Similarity=0.192 Sum_probs=130.5
Q ss_pred CCCceeEEEEcCCC----CcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 164 HQGCVNRIRAMTQN----PHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 164 H~~~V~~i~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
+...++.+.+.+.. ..++++++.||+|++|++................ .............+...+.+++|+|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~s~ 194 (393)
T d1sq9a_ 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP---TLELQGTVESPMTPSQFATSVDISE 194 (393)
T ss_dssp GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC---EEEEEEEECCSSSSCCCCCEEEECT
T ss_pred CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc---ceecccceecccCCCCcEEEEEECC
Confidence 55677788887764 3688999999999999986532211100000000 0000000111223445688999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcc--cCCCccccCCCcEEEEEECCCCCCEEEEEECCCc---EEEEECCCCCCeeE
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWN--VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGH---IAIWDTRVGKSALT 314 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~--~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~---I~iwD~r~~~~~~~ 314 (358)
++ +||+|+.||+|+|||+.+..... .....+.+|...|++|+|+|++. +|++|+.|++ |+|||++++ .++.
T Consensus 195 dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g-~~~~ 270 (393)
T d1sq9a_ 195 RG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFG-ERIG 270 (393)
T ss_dssp TS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTC-CEEE
T ss_pred CC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc-eeeeecCCCCcceeeecccccc-eeee
Confidence 85 89999999999999998743211 12345678999999999999998 9999999875 999999885 3444
Q ss_pred EE-------------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 315 SF-------------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 315 ~~-------------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.+ .+|...|++|+|+|++ .+|+|||.|++|+|||+++++
T Consensus 271 ~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~-~~l~S~s~D~~v~vWd~~~g~ 322 (393)
T d1sq9a_ 271 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKE 322 (393)
T ss_dssp EECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTE
T ss_pred eeccccccccceeeeecccCceeeeccCCCC-CeeEEECCCCEEEEEECCCCC
Confidence 33 4799999999999999 999999999999999998864
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=4.5e-21 Score=178.02 Aligned_cols=167 Identities=16% Similarity=0.198 Sum_probs=124.5
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.+...++++.|+|++ +||+|+.||+|+|||+....... ...+...+.+|...|.+|+|+|++.
T Consensus 182 ~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~---------------~~~~~~~l~~h~~~V~~l~~spdg~ 244 (393)
T d1sq9a_ 182 TPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLY---------------NFESQHSMINNSNSIRSVKFSPQGS 244 (393)
T ss_dssp SSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEE---------------EEECCC---CCCCCEEEEEECSSTT
T ss_pred CCCCcEEEEEECCCC--EEEEEeCCCcEEEEeeccccccc---------------ccccccccccccceEEEcccccccc
Confidence 356779999999987 89999999999999998632111 0123345678999999999999998
Q ss_pred CeEEEEeCCCc---EEEEecCCCCCcc---------cCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 243 GRLVTGDCNSC---IYLWEPASDATWN---------VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 243 ~~l~sgs~dg~---I~lwd~~~~~~~~---------~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
+|++|+.|++ |++||+.++.... .....+.+|...|++|+|+|+++ +|+||+.|++|+|||++++
T Consensus 245 -~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-~l~S~s~D~~v~vWd~~~g- 321 (393)
T d1sq9a_ 245 -LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTK- 321 (393)
T ss_dssp -EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTT-
T ss_pred -eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC-eeEEECCCCEEEEEECCCC-
Confidence 9999998874 9999997743211 11234568999999999999998 9999999999999999985
Q ss_pred CeeEEEecCCCC---------------------eEEEEEeCCC---------CcEEEEEeCCCCEEEEe
Q 018322 311 SALTSFKAHNAD---------------------VNVISWNRLA---------SCLLASGSDDGTFSIHD 349 (358)
Q Consensus 311 ~~~~~~~~h~~~---------------------V~~i~~~p~~---------~~~lasgs~Dg~i~iwD 349 (358)
.++.++.+|... +.++.|.+.+ ...|++++.|+.|++|.
T Consensus 322 ~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 322 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 688888888644 4455554432 13467777777777774
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=4.8e-21 Score=169.32 Aligned_cols=157 Identities=18% Similarity=0.288 Sum_probs=122.6
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCC-CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE-cCCCCCeEEEEeCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADT-GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF-GGHKDEGYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~d-g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~s~~~ 241 (358)
+...+.+ +++.+ ..+++++.+ +.|++|++... .....+ ..|...+++++|+|++
T Consensus 119 ~~~~~~~--~~~~~-~~~~v~~~~~~~v~~~~~~~~---------------------~~~~~~~~~~~~~v~~~~~s~~~ 174 (287)
T d1pgua2 119 LNSPGSA--VSLSQ-NYVAVGLEEGNTIQVFKLSDL---------------------EVSFDLKTPLRAKPSYISISPSE 174 (287)
T ss_dssp CSSCEEE--EEECS-SEEEEEETTTSCEEEEETTEE---------------------EEEEECSSCCSSCEEEEEECTTS
T ss_pred ccceeee--eeccC-cceeeeccccceeeeeecccc---------------------ceeeeeeeccCCceeEEEeccCc
Confidence 4444444 45555 355555555 57999998752 222222 3467789999999999
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCC---------CCEEEEEECCCcEEEEECCCCCCe
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTE---------PDVFASCSVDGHIAIWDTRVGKSA 312 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~---------~~~las~s~Dg~I~iwD~r~~~~~ 312 (358)
. +|++|+.||.|++||+.+.... ...+.+|...|.+++|+|.+ ..+|++|+.|++|+|||++.+...
T Consensus 175 ~-~l~~g~~dg~i~i~d~~~~~~~---~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~ 250 (287)
T d1pgua2 175 T-YIAAGDVMGKILLYDLQSREVK---TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI 250 (287)
T ss_dssp S-EEEEEETTSCEEEEETTTTEEE---ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC
T ss_pred c-ccccccccccccceeecccccc---cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE
Confidence 8 9999999999999999774322 24567899999999999854 238999999999999999886666
Q ss_pred eEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 313 LTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 313 ~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
+..+.+|...|++++|+|++ .|+|++.||+|++|++
T Consensus 251 ~~~~~~h~~~V~~v~~~~~~--~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 251 IKALNAHKDGVNNLLWETPS--TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEETTSSTTCEEEEEEEETT--EEEEEETTSCEEEEEE
T ss_pred EEEeCCCCCCeEEEEECCCC--EEEEEECCCeEEEEEE
Confidence 77778999999999999977 5889999999999985
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=5.8e-20 Score=164.16 Aligned_cols=164 Identities=19% Similarity=0.290 Sum_probs=132.4
Q ss_pred eEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEE
Q 018322 156 ILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAI 235 (358)
Q Consensus 156 ~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 235 (358)
.....+.+|...+..+.+. + ..+++++.||.|++||+.. ..++..+.+|...+.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~--~-~~l~s~~~dg~i~~~d~~~---------------------~~~~~~~~~~~~~v~~~ 223 (342)
T d2ovrb2 168 TCLHTLQGHTNRVYSLQFD--G-IHVVSGSLDTSIRVWDVET---------------------GNCIHTLTGHQSLTSGM 223 (342)
T ss_dssp EEEEEECCCSSCEEEEEEC--S-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCCSCEEEE
T ss_pred eeeEEEcCcccccccccCC--C-CEEEEEeCCCeEEEeeccc---------------------ceeeeEecccccceeEE
Confidence 3445667788777776664 4 6899999999999999987 57778899999999999
Q ss_pred EeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 236 DWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 236 ~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
++++ . +|++|+.||.|++||+..... .........|...+.++.|++ . ++++|+.||+|+|||++++ +.+..
T Consensus 224 ~~~~--~-~l~s~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~-~~~s~s~Dg~i~iwd~~tg-~~i~~ 295 (342)
T d2ovrb2 224 ELKD--N-ILVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNK--N-FVITSSDDGTVKLWDLKTG-EFIRN 295 (342)
T ss_dssp EEET--T-EEEEEETTSCEEEEETTTCCE-EEEECSTTSCSSCEEEEEECS--S-EEEEEETTSEEEEEETTTC-CEEEE
T ss_pred ecCC--C-EEEEEcCCCEEEEEecccccc-cccccccceeeeceeecccCC--C-eeEEEcCCCEEEEEECCCC-CEEEE
Confidence 8876 3 999999999999999977433 222233445778888888875 3 8999999999999999985 45555
Q ss_pred E-----ecCCCCeEEEEEeCCCCcEEEEEeCCCC----EEEEeCCC
Q 018322 316 F-----KAHNADVNVISWNRLASCLLASGSDDGT----FSIHDLRL 352 (358)
Q Consensus 316 ~-----~~h~~~V~~i~~~p~~~~~lasgs~Dg~----i~iwDlr~ 352 (358)
+ .+|...|++++|+|++ .+||+|+.||+ |++||+..
T Consensus 296 ~~~~~~~~~~~~v~~v~~s~~~-~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 296 LVTLESGGSGGVVWRIRASNTK-LVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEECTTGGGTCEEEEEEECSSE-EEEEEECSSSSSCCEEEEEECCC
T ss_pred EecccCCCCCCCEEEEEECCCC-CEEEEEeCCCCCeeEEEEEeCCC
Confidence 5 3577889999999999 99999999986 99999863
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=3.9e-21 Score=169.86 Aligned_cols=165 Identities=16% Similarity=0.173 Sum_probs=118.1
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
+...+.+|.++|++++|+| |+||+.||+|++||+... ..+|...|.+++
T Consensus 5 ~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~--------------------------~~~h~~~V~~~~ 53 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM--------------------------HQDHSNLIVSLD 53 (287)
T ss_dssp EEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE--------------------------ECCCCSCEEEEE
T ss_pred eeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC--------------------------CCCCCCCEEEEE
Confidence 4457889999999999986 899999999999998652 124555555555
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCC----------------------------------CCCc-----------------
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPAS----------------------------------DATW----------------- 265 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~----------------------------------~~~~----------------- 265 (358)
|++.. .+++++.|++|++|++.. ....
T Consensus 54 ~~~~~--~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (287)
T d1pgua2 54 NSKAQ--EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQN 131 (287)
T ss_dssp CCSTT--CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSS
T ss_pred ecCCC--eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCc
Confidence 55432 345555555555554321 1000
Q ss_pred --------------------ccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEE
Q 018322 266 --------------------NVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNV 325 (358)
Q Consensus 266 --------------------~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~ 325 (358)
.........|...|++++|+|++. +|++|+.||.|++||++.+......+..|...|++
T Consensus 132 ~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~ 210 (287)
T d1pgua2 132 YVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET-YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINA 210 (287)
T ss_dssp EEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEE
T ss_pred ceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcc-ccccccccccccceeecccccccccccccccccce
Confidence 000000123667899999999998 99999999999999999854333345789999999
Q ss_pred EEEeCCC---------CcEEEEEeCCCCEEEEeCCCCCC
Q 018322 326 ISWNRLA---------SCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 326 i~~~p~~---------~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
++|+|.+ ..+|+||+.|++|+|||+++...
T Consensus 211 ~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~ 249 (287)
T d1pgua2 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK 249 (287)
T ss_dssp EEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC
T ss_pred eeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe
Confidence 9999854 36899999999999999987543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=1e-19 Score=163.36 Aligned_cols=172 Identities=20% Similarity=0.266 Sum_probs=123.1
Q ss_pred CeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC--CCCCe
Q 018322 155 PILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG--HKDEG 232 (358)
Q Consensus 155 ~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v 232 (358)
..+...+.+|.+.|++++|+|++ +|++|+.||+|++|++.... ....... +....
T Consensus 43 ~~~~~~l~~H~~~V~~l~~s~~~--~l~s~s~D~~i~iw~~~~~~---------------------~~~~~~~~~~~~~~ 99 (355)
T d1nexb2 43 KKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGC---------------------CTHVFEGHNSTVRC 99 (355)
T ss_dssp TEEEEEEECCSSCEEEEEEETTT--EEEEEETTCCEEEEETTTTE---------------------EEEEECCCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEEcCCC--EEEEEecccccccccccccc---------------------cccccccccccccc
Confidence 34556778999999999999865 89999999999999998732 1111111 11123
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCc-----------------------------------------------
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATW----------------------------------------------- 265 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~----------------------------------------------- 265 (358)
....+++++. ++++++.|+.|++|++......
T Consensus 100 ~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 178 (355)
T d1nexb2 100 LDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178 (355)
T ss_dssp EEEEEETTEE-EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred cccccccccc-eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeec
Confidence 3344444444 5555555555555555432100
Q ss_pred ------------ccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCC
Q 018322 266 ------------NVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLAS 333 (358)
Q Consensus 266 ------------~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~ 333 (358)
......+.++...+.++.|+|.+. .+++++.|+.|++||++++ .++..+.+|...|++++|++
T Consensus 179 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~v~~~~~~~--- 253 (355)
T d1nexb2 179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-RCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLSD--- 253 (355)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTC-CEEEEECCCSSCCCEEEECS---
T ss_pred ccceeeeeecccccceeeeeccccccccccccccce-eeecccccceEEeeecccc-cccccccccccccccccccc---
Confidence 000122345667788899999998 9999999999999999985 57888899999999999975
Q ss_pred cEEEEEeCCCCEEEEeCCCCCC
Q 018322 334 CLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 334 ~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.+|++|+.||.|++||+++...
T Consensus 254 ~~l~~~~~dg~i~iwd~~~~~~ 275 (355)
T d1nexb2 254 KFLVSAAADGSIRGWDANDYSR 275 (355)
T ss_dssp SEEEEECTTSEEEEEETTTCCE
T ss_pred ceeeeeecccccccccccccce
Confidence 6899999999999999988754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=6.8e-20 Score=163.25 Aligned_cols=208 Identities=10% Similarity=0.056 Sum_probs=136.9
Q ss_pred ceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 018322 69 CLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSNDDEDVDSESSDSDEDSDDDE 148 (358)
Q Consensus 69 ~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (358)
..++.|.|++ .+|++|+ .++.|.||++..-
T Consensus 14 I~~l~fsp~~-----------~~L~s~s-----~Dg~v~iwd~~~~---------------------------------- 43 (342)
T d1yfqa_ 14 ISDIKIIPSK-----------SLLLITS-----WDGSLTVYKFDIQ---------------------------------- 43 (342)
T ss_dssp EEEEEEEGGG-----------TEEEEEE-----TTSEEEEEEEETT----------------------------------
T ss_pred EEEEEEeCCC-----------CEEEEEE-----CCCeEEEEEccCC----------------------------------
Confidence 4578888885 4788887 4679999998410
Q ss_pred CCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC
Q 018322 149 EGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH 228 (358)
Q Consensus 149 ~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 228 (358)
+.........+|.++|++++|+|.++.+|++|+.||.|++|++.. .........+
T Consensus 44 ----~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~---------------------~~~~~~~~~~ 98 (342)
T d1yfqa_ 44 ----AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG---------------------SPSFQALTNN 98 (342)
T ss_dssp ----TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS---------------------SSSEEECBSC
T ss_pred ----CcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc---------------------cccccccccc
Confidence 122222455679999999999998768999999999999999987 2333333333
Q ss_pred CC-CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCcccc--CCCcEEEEEECCCCCCEEEEEECCCcEEEEE
Q 018322 229 KD-EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIG--HSASVEDLQWSPTEPDVFASCSVDGHIAIWD 305 (358)
Q Consensus 229 ~~-~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD 305 (358)
.. ......+.+... .+++++.++++++||++.............. .......+.+.+.+. .+++++.|+.|++||
T Consensus 99 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~ 176 (342)
T d1yfqa_ 99 EANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS-RLIVGMNNSQVQWFR 176 (342)
T ss_dssp CCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS-EEEEEESTTEEEEEE
T ss_pred ccccccccccccccc-cccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC-ceeeecCCCcEEEEe
Confidence 33 444455555555 9999999999999998653221110111111 112223334444444 566666666666666
Q ss_pred CCCCCCe---------------------------------------------------eEE---------EecCCCCeEE
Q 018322 306 TRVGKSA---------------------------------------------------LTS---------FKAHNADVNV 325 (358)
Q Consensus 306 ~r~~~~~---------------------------------------------------~~~---------~~~h~~~V~~ 325 (358)
++..... ... ...|...|++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 256 (342)
T d1yfqa_ 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256 (342)
T ss_dssp SSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEE
T ss_pred cccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCccccccee
Confidence 5432100 000 0234557899
Q ss_pred EEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 326 ISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 326 i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|+|+|++ .+||||+.||.|+|||+++.+
T Consensus 257 l~~sp~~-~~lasg~~Dg~v~vWD~~~~~ 284 (342)
T d1yfqa_ 257 IEFSPRH-KFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp EEECTTT-CCEEEEETTSCEEEEETTTTE
T ss_pred EEecCCc-cEEEEECCCCEEEEEECCCCc
Confidence 9999999 899999999999999998764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=8.2e-20 Score=159.54 Aligned_cols=177 Identities=21% Similarity=0.302 Sum_probs=127.0
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccc-------------cc------------c-
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESET-------------IV------------G- 210 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~-------------~~------------~- 210 (358)
+...+.+|.+.|+++.|. + .+|++|+.||.|++|++............ .. .
T Consensus 47 ~~~~l~~H~~~V~~v~~~--~-~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (293)
T d1p22a2 47 CKRILTGHTGSVLCLQYD--E-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123 (293)
T ss_dssp EEEEECCCSSCEEEEECC--S-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECS
T ss_pred EEEEEecCCCCEeeeecc--c-ceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeecc
Confidence 445667899999999874 3 69999999999999998763211000000 00 0
Q ss_pred -----------CCCC-------------------------CCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcE
Q 018322 211 -----------QGAP-------------------------QVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCI 254 (358)
Q Consensus 211 -----------~~~~-------------------------~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I 254 (358)
.... .....+++..+.+|...+..+.+++ . +|++|+.||.|
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i 200 (293)
T d1p22a2 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--R-LVVSGSSDNTI 200 (293)
T ss_dssp SSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET--T-EEEEEETTSCE
T ss_pred ccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEcccccccccccCCC--C-eEEEecCCCEE
Confidence 0000 0023455666777777888877764 3 89999999999
Q ss_pred EEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC--------CCeeEEEecCCCCeEEE
Q 018322 255 YLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG--------KSALTSFKAHNADVNVI 326 (358)
Q Consensus 255 ~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~--------~~~~~~~~~h~~~V~~i 326 (358)
++||+++... . ..+.+|...+..+. +++. +|++|+.||.|++||++.. ..++..+.+|...|+++
T Consensus 201 ~i~d~~~~~~-~---~~~~~~~~~v~~~~--~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v 273 (293)
T d1p22a2 201 RLWDIECGAC-L---RVLEGHEELVRCIR--FDNK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 273 (293)
T ss_dssp EEEETTTCCE-E---EEECCCSSCEEEEE--CCSS-EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred EEEeccccee-e---eeecccceeeeecc--ccce-EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEE
Confidence 9999987432 2 45666777777654 4555 8999999999999997542 23567788999999999
Q ss_pred EEeCCCCcEEEEEeCCCCEEEEe
Q 018322 327 SWNRLASCLLASGSDDGTFSIHD 349 (358)
Q Consensus 327 ~~~p~~~~~lasgs~Dg~i~iwD 349 (358)
+|++ .+|+|||.||+|+|||
T Consensus 274 ~~d~---~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 274 QFDE---FQIVSSSHDDTILIWD 293 (293)
T ss_dssp EECS---SCEEECCSSSEEEEEC
T ss_pred EEcC---CEEEEEecCCEEEEeC
Confidence 9964 6799999999999998
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=7.8e-20 Score=164.19 Aligned_cols=158 Identities=16% Similarity=0.246 Sum_probs=127.5
Q ss_pred EEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEE
Q 018322 157 LQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAID 236 (358)
Q Consensus 157 ~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 236 (358)
......++...+.++.++|.+ .++++++.||+|++|++.. ..++..+.+|...|.+++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~---------------------~~~~~~~~~h~~~v~~~~ 250 (355)
T d1nexb2 193 CLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLEN---------------------GELMYTLQGHTALVGLLR 250 (355)
T ss_dssp EEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCCCEEE
T ss_pred ceeeeeccccccccccccccc-eeeecccccceEEeeeccc---------------------cccccccccccccccccc
Confidence 335566788999999999998 7899999999999999987 577788999999999999
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEE-CCCCCCEEEEEECCCcEEEEECCCCCCeeE-
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQW-SPTEPDVFASCSVDGHIAIWDTRVGKSALT- 314 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~-sp~~~~~las~s~Dg~I~iwD~r~~~~~~~- 314 (358)
|++ . +|++|+.||.|++||+++.. ..+..|...+.++.+ ++++. ++++|+ |+.|+|||+++++ ++.
T Consensus 251 ~~~--~-~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~-~l~~g~-d~~i~vwd~~tg~-~~~~ 318 (355)
T d1nexb2 251 LSD--K-FLVSAAADGSIRGWDANDYS------RKFSYHHTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGK-LVHA 318 (355)
T ss_dssp ECS--S-EEEEECTTSEEEEEETTTCC------EEEEEECTTCCCCCEEEECSS-EEEEEE-TTEEEEEETTTCC-BCCS
T ss_pred ccc--c-eeeeeecccccccccccccc------eecccccCCceEEEEEcCCCC-EEEEEe-CCEEEEEECCCCC-EEEE
Confidence 975 3 99999999999999997642 345567777776654 55554 666654 8999999999864 443
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.+.+|...|++++|+|+ .++++++.||+++||.+
T Consensus 319 ~~~~~~~~V~~v~~~~~--~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 319 NILKDADQIWSVNFKGK--TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CTTTTCSEEEEEEEETT--EEEEEEESSSCEEEEEE
T ss_pred EecCCCCCEEEEEEcCC--eEEEEEECCCcEEEEEE
Confidence 45789999999999985 48889999999776643
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=3.7e-19 Score=158.83 Aligned_cols=164 Identities=19% Similarity=0.287 Sum_probs=127.4
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
..+.+|.+.|.+ ++++++ ++||||+.||+|+|||+.. .+++.++.+|...|++++|+
T Consensus 10 ~~l~GH~~~V~s-~~~~~g-~~l~sgs~Dg~i~vWd~~~---------------------~~~~~~~~~h~~~V~~v~~~ 66 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CLQFCG-NRIVSGSDDNTLKVWSAVT---------------------GKCLRTLVGHTGGVWSSQMR 66 (342)
T ss_dssp EEEECSTTSCEE-EEEEET-TEEEEEETTSCEEEEETTT---------------------CCEEEECCCCSSCEEEEEEE
T ss_pred EEECCcCCceEE-EEEECC-CEEEEEeCCCeEEEEECCC---------------------CCEEEEEeCCCCCEEEEEeC
Confidence 346699999865 355556 6899999999999999976 57888999999999999998
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCccc---------------------------------------------------
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNV--------------------------------------------------- 267 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~--------------------------------------------------- 267 (358)
++ +|++|+.|+.+++|+.........
T Consensus 67 ~~---~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
T d2ovrb2 67 DN---IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 143 (342)
T ss_dssp TT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred CC---ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceee
Confidence 73 899999999999998765210000
Q ss_pred -------------------------CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 268 -------------------------DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 268 -------------------------~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
....+.+|...+..+. +++. .|++|+.||.|++||++.. .++..+..|...
T Consensus 144 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~-~l~s~~~dg~i~~~d~~~~-~~~~~~~~~~~~ 219 (342)
T d2ovrb2 144 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ--FDGI-HVVSGSLDTSIRVWDVETG-NCIHTLTGHQSL 219 (342)
T ss_dssp EECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE--ECSS-EEEEEETTSCEEEEETTTC-CEEEEECCCCSC
T ss_pred ccccceeeeecCCCeEEEeecccceeeEEEcCccccccccc--CCCC-EEEEEeCCCeEEEeecccc-eeeeEecccccc
Confidence 0001123444444443 4455 8999999999999999985 578888999999
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
|.++++++ .+|++|+.||.|++||++..+.
T Consensus 220 v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~ 249 (342)
T d2ovrb2 220 TSGMELKD---NILVSGNADSTVKIWDIKTGQC 249 (342)
T ss_dssp EEEEEEET---TEEEEEETTSCEEEEETTTCCE
T ss_pred eeEEecCC---CEEEEEcCCCEEEEEecccccc
Confidence 99998875 6899999999999999987653
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=9.8e-19 Score=152.55 Aligned_cols=160 Identities=18% Similarity=0.359 Sum_probs=125.0
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
...|...|+|+.| ++ ++||||+.||+|+|||+.. .+++.++.+|...|++|+|+
T Consensus 11 ~~~~~~~V~c~~~--d~-~~l~sgs~Dg~i~vWd~~~---------------------~~~~~~l~~H~~~V~~v~~~-- 64 (293)
T d1p22a2 11 RSETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNT---------------------LECKRILTGHTGSVLCLQYD-- 64 (293)
T ss_dssp CCSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSS---------------------CCEEEEECCCSSCEEEEECC--
T ss_pred cCCCCCCEEEEEE--cC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEEecCCCCEeeeecc--
Confidence 3468889999765 45 7999999999999999976 67888999999999999985
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCccc---------------------------------------CCCccccCCCcEEE
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNV---------------------------------------DPNPFIGHSASVED 281 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~---------------------------------------~~~~~~~h~~~V~~ 281 (358)
+. +|++|+.||.|++|++........ ....+..|...|..
T Consensus 65 ~~-~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 143 (293)
T d1p22a2 65 ER-VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 143 (293)
T ss_dssp SS-EEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEE
T ss_pred cc-eeecccccccccccccccccccccccccccccccccccccceeecccccceeEeecccccccccccccccccccccc
Confidence 44 999999999999999876421000 00112345666666
Q ss_pred EEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 282 LQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 282 v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+.+.+ . .+++++.|+.|++||+++. .++..+.+|...|..+.+++ .+|++|+.||+|++||+++.+
T Consensus 144 ~~~~~--~-~~~~~s~d~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~ 209 (293)
T d1p22a2 144 VDFDD--K-YIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGA 209 (293)
T ss_dssp EEEET--T-EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEETTTCC
T ss_pred ceecc--c-ccccccCCCceeeecCCCC-cEEEEEcccccccccccCCC---CeEEEecCCCEEEEEecccce
Confidence 66653 3 6888899999999999885 57777888888888888764 578999999999999998765
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=1.7e-19 Score=160.68 Aligned_cols=173 Identities=11% Similarity=0.084 Sum_probs=126.2
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
....+|...|++|+|+|++ .+||+|+.||+|+|||+..... ...+....+|..+|++++|+
T Consensus 5 ~~~~~h~d~I~~l~fsp~~-~~L~s~s~Dg~v~iwd~~~~~~------------------~~~~~~~~~h~~~V~~v~f~ 65 (342)
T d1yfqa_ 5 QIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAK------------------NVDLLQSLRYKHPLLCCNFI 65 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTT------------------EEEEEEEEECSSCEEEEEEE
T ss_pred EcCCCCCCCEEEEEEeCCC-CEEEEEECCCeEEEEEccCCCc------------------ceEEEEecCCCCCEEEEEEe
Confidence 3457899999999999998 7999999999999999876210 11223344799999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE---
Q 018322 239 PITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS--- 315 (358)
Q Consensus 239 ~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~--- 315 (358)
|.+..+|++|+.||.|++|++....... .....+........+.+... .+++++.++++++||++........
T Consensus 66 ~~~~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~~~ 141 (342)
T d1yfqa_ 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAVKN 141 (342)
T ss_dssp ESSSEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEEEE
T ss_pred CCCCCEEEEcccccceeeeecccccccc---cccccccccccccccccccc-cccccccccccceeeccccccceeeecc
Confidence 8765589999999999999997744322 11222333334444555555 9999999999999999864332222
Q ss_pred EecC--CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 316 FKAH--NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 316 ~~~h--~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
...+ ......+.+.+.+ ..+++++.||.|++||++..+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~ 182 (342)
T d1yfqa_ 142 LNSNNTKVKNKIFTMDTNS-SRLIVGMNNSQVQWFRLPLCED 182 (342)
T ss_dssp SCSSSSSSCCCEEEEEECS-SEEEEEESTTEEEEEESSCCTT
T ss_pred cccccccceeeeeeeeccC-CceeeecCCCcEEEEecccCcc
Confidence 1222 2234556777777 8899999999999999987654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.78 E-value=4.4e-18 Score=153.80 Aligned_cols=161 Identities=14% Similarity=0.050 Sum_probs=131.0
Q ss_pred ecCCCceeEEEEcCCCCcEEEE-EeCCC-cEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICAS-WADTG-HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat-~s~dg-~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
++|.+.|.+++|+|++ +.|++ +..+| .|++||+.. .....+..|...+.+++|+|
T Consensus 39 ~~~~~~v~~~~~spDg-~~l~~~~~~~g~~v~v~d~~~----------------------~~~~~~~~~~~~v~~~~~sp 95 (360)
T d1k32a3 39 VPEPLRIRYVRRGGDT-KVAFIHGTREGDFLGIYDYRT----------------------GKAEKFEENLGNVFAMGVDR 95 (360)
T ss_dssp CSCCSCEEEEEECSSS-EEEEEEEETTEEEEEEEETTT----------------------CCEEECCCCCCSEEEEEECT
T ss_pred ccCCCCEEEEEECCCC-CEEEEEEcCCCCEEEEEECCC----------------------CcEEEeeCCCceEEeeeecc
Confidence 5899999999999999 45554 44443 799999976 34456778999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE----------CCCcEEEEECCCC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS----------VDGHIAIWDTRVG 309 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s----------~Dg~I~iwD~r~~ 309 (358)
++. +|++++.++.+++|++..... . ..+..|...+.+++|+|++. +|+.++ .++.+++||+..+
T Consensus 96 dg~-~l~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~~~~v~d~~~~ 169 (360)
T d1k32a3 96 NGK-FAVVANDRFEIMTVDLETGKP-T---VIERSREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGR 169 (360)
T ss_dssp TSS-EEEEEETTSEEEEEETTTCCE-E---EEEECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred ccc-ccceeccccccccccccccce-e---eeeecccccccchhhcccee-eeeeeccccccceeeccccceeeeccccC
Confidence 998 999999999999999976432 2 45667888999999999999 666543 3456999999874
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
....+..|...+..++|+|++ ..|++++.++.+++||.....
T Consensus 170 --~~~~~~~~~~~~~~~~~spdg-~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 170 --KIFAATTENSHDYAPAFDADS-KNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp --EEEECSCSSSBEEEEEECTTS-CEEEEEESCCCCCEECSSSSC
T ss_pred --ceeeecccccccccccccCCC-CEEEEEeCCCceEcccccccc
Confidence 345566778889999999999 899999999999999986543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.74 E-value=7e-17 Score=145.75 Aligned_cols=119 Identities=9% Similarity=-0.042 Sum_probs=98.8
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
.++..|.+.|++++|+|++ .+|++++.++.+++|++.. ......+..|...+.+++|+
T Consensus 79 ~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~s 136 (360)
T d1k32a3 79 EKFEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLET---------------------GKPTVIERSREAMITDFTIS 136 (360)
T ss_dssp EECCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCEEEEEECSSSCCCCEEEC
T ss_pred EEeeCCCceEEeeeecccc-cccceeccccccccccccc---------------------cceeeeeecccccccchhhc
Confidence 3567899999999999999 7999999999999999987 46667788888899999999
Q ss_pred CCCCCeEEEE----------eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 239 PITTGRLVTG----------DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 239 ~~~~~~l~sg----------s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
|++. +|+.+ ..++.+++|++.+... ..+..|...+..++|+|++. .|++++.++.+++||.
T Consensus 137 pdg~-~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~-----~~~~~~~~~~~~~~~spdg~-~l~~~s~~~~~~~~d~ 207 (360)
T d1k32a3 137 DNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-----FAATTENSHDYAPAFDADSK-NLYYLSYRSLDPSPDR 207 (360)
T ss_dssp TTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTTEE-----EECSCSSSBEEEEEECTTSC-EEEEEESCCCCCEECS
T ss_pred ccee-eeeeeccccccceeeccccceeeeccccCce-----eeecccccccccccccCCCC-EEEEEeCCCceEcccc
Confidence 9998 87754 3455799999976322 23445677888999999998 8999999999999875
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.59 E-value=9.7e-14 Score=123.34 Aligned_cols=182 Identities=8% Similarity=-0.036 Sum_probs=115.4
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccc--ccccc--------ccCCCC-C-----------------
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALA--ESETI--------VGQGAP-Q----------------- 215 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~--~~~~~--------~~~~~~-~----------------- 215 (358)
+...+..++|+|++..++++++.++.|++||+.+...... ..... ...... .
T Consensus 32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence 4567889999999965667888999999999976322110 00000 000000 0
Q ss_pred ----------CCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCccc------------C-----
Q 018322 216 ----------VSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNV------------D----- 268 (358)
Q Consensus 216 ----------~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~------------~----- 268 (358)
.........+. +...+.+++|+|++. ++++++. .+.+||..+...... .
T Consensus 112 ~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (337)
T d1pbyb_ 112 VQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGS-KLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA 187 (337)
T ss_dssp ECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSS-CEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCC
T ss_pred ccccceeeccccCCeEEEecc-ccCCceEEEEcCCCC-EEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcce
Confidence 01112222222 334677899999998 8888764 467788765310000 0
Q ss_pred ---------------------------------------------CCccccCCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 269 ---------------------------------------------PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 269 ---------------------------------------------~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
...+..+...+..+.++|++. +++.+ ++.|++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~i~v 264 (337)
T d1pbyb_ 188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT-RAFGA--YNVLES 264 (337)
T ss_dssp CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSS-EEEEE--ESEEEE
T ss_pred eeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccce-EEEEc--cccEEE
Confidence 000112344555667778776 55544 589999
Q ss_pred EECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 304 WDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
||+.++ ..+..+ .+...+.+++|+|+| .+|++|+.+|+|+|||+++++.
T Consensus 265 ~d~~~~-~~~~~~-~~~~~~~~~~~s~dG-~~l~v~~~~~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 265 FDLEKN-ASIKRV-PLPHSYYSVNVSTDG-STVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp EETTTT-EEEEEE-ECSSCCCEEEECTTS-CEEEEESBSSEEEEEETTTCCE
T ss_pred EECCCC-cEEEEE-cCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcE
Confidence 999984 455554 456678999999999 8899999999999999998763
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.56 E-value=7.1e-13 Score=115.94 Aligned_cols=224 Identities=13% Similarity=0.069 Sum_probs=145.6
Q ss_pred eeeChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCCCCCCCCC
Q 018322 50 LQCDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELVPNKPSND 129 (358)
Q Consensus 50 l~~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~~~~~~~~ 129 (358)
-..|..-...+.++.+.--...+.+-||+. ..++++. ..+.|.+|++.
T Consensus 15 ~v~D~~t~~~~~~i~~g~~p~~va~spdG~----------~l~v~~~-----~~~~i~v~d~~----------------- 62 (301)
T d1l0qa2 15 SVIDVTSNKVTATIPVGSNPMGAVISPDGT----------KVYVANA-----HSNDVSIIDTA----------------- 62 (301)
T ss_dssp EEEETTTTEEEEEEECSSSEEEEEECTTSS----------EEEEEEG-----GGTEEEEEETT-----------------
T ss_pred EEEECCCCeEEEEEECCCCceEEEEeCCCC----------EEEEEEC-----CCCEEEEEECC-----------------
Confidence 334444445555556554445777888852 2334444 34689999773
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccc
Q 018322 130 DEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIV 209 (358)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~ 209 (358)
.......+..| ..+..+.+++++..+++++..++.+.+|+...
T Consensus 63 ------------------------t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 105 (301)
T d1l0qa2 63 ------------------------TNNVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTS------------ 105 (301)
T ss_dssp ------------------------TTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT------------
T ss_pred ------------------------CCceeeeeecc-ccccccccccccccccccccccceeeeccccc------------
Confidence 22232333344 45788999999977888888889999999976
Q ss_pred cCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccC---------------------
Q 018322 210 GQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVD--------------------- 268 (358)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~--------------------- 268 (358)
......+.. .....++.|+|++...++++..++.+.+|+..+.......
T Consensus 106 ---------~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (301)
T d1l0qa2 106 ---------NTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVA 175 (301)
T ss_dssp ---------TEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE
T ss_pred ---------ceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeee
Confidence 334444443 3466788888888744456666778888887653210000
Q ss_pred ----------------CCccccCCCcEEEEEECCCCCCEEEEEE--CCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeC
Q 018322 269 ----------------PNPFIGHSASVEDLQWSPTEPDVFASCS--VDGHIAIWDTRVGKSALTSFKAHNADVNVISWNR 330 (358)
Q Consensus 269 ----------------~~~~~~h~~~V~~v~~sp~~~~~las~s--~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p 330 (358)
..........+..++|++++..+++++. .++.|++||+.++ ..+..+.. ...++.++|+|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~-~~~~~~~~-~~~~~~va~sp 253 (301)
T d1l0qa2 176 NFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-KITARIPV-GPDPAGIAVTP 253 (301)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-EEEEEEEC-CSSEEEEEECT
T ss_pred cccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCC-eEEEEEcC-CCCEEEEEEeC
Confidence 0000112345667889999984544443 3468999999985 45555544 45689999999
Q ss_pred CCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 331 LASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 331 ~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
+|..++++++.+++|++||+.+++
T Consensus 254 dg~~l~va~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 254 DGKKVYVALSFCNTVSVIDTATNT 277 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCCEEEEEECCCCeEEEEECCCCe
Confidence 994456788889999999998865
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=9e-14 Score=130.22 Aligned_cols=174 Identities=9% Similarity=-0.038 Sum_probs=122.0
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE---EcCCCCCeEEEE
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK---FGGHKDEGYAID 236 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~ 236 (358)
.+..| ..+..++|+|+| +++++++.||+|++||+.... ...... ..+|...+.+..
T Consensus 57 ~~~~g-~~~~~v~fSpDG-~~l~~~s~dg~v~~~d~~t~~-------------------~~~~~~i~~~~~~~~~~~s~~ 115 (432)
T d1qksa2 57 VLDTG-YAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKE-------------------PTTVAEIKIGSEARSIETSKM 115 (432)
T ss_dssp EEECS-SCEEEEEECTTS-CEEEEEETTSEEEEEETTSSS-------------------CCEEEEEECCSEEEEEEECCS
T ss_pred EEeCC-CCeeEEEECCCC-CEEEEEcCCCCEEEEEeeCCC-------------------ceEEEEEecCCCCCCeEEecc
Confidence 33344 469999999999 788999999999999997621 111222 234555666778
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccC-------CCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVD-------PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~-------~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
|+|+|+.+++++..++.|.+||..+....... ......+......+.++|++..++++...++.|.+||....
T Consensus 116 ~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~ 195 (432)
T d1qksa2 116 EGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 195 (432)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred cCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCC
Confidence 88999833578888999999999774321100 01122355667889999999867788888999999999875
Q ss_pred CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 310 KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 310 ~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
......--.+...+..++|+|++..+++++..++.+.+||.++.+
T Consensus 196 ~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~ 240 (432)
T d1qksa2 196 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 240 (432)
T ss_dssp SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence 432222234566789999999994445555556789999988654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=4.7e-14 Score=132.22 Aligned_cols=152 Identities=9% Similarity=-0.048 Sum_probs=120.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
.++++.+.+|+|.|||... .+.+..+..|. .++.++|+|+|+ +|++++.|++|.+||
T Consensus 33 ~~~v~~~d~g~v~v~D~~t---------------------~~v~~~~~~g~-~~~~v~fSpDG~-~l~~~s~dg~v~~~d 89 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGST---------------------YEIKTVLDTGY-AVHISRLSASGR-YLFVIGRDGKVNMID 89 (432)
T ss_dssp EEEEEETTTTEEEEEETTT---------------------CCEEEEEECSS-CEEEEEECTTSC-EEEEEETTSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCC---------------------CcEEEEEeCCC-CeeEEEECCCCC-EEEEEcCCCCEEEEE
Confidence 4569999999999999987 67778887764 699999999998 999999999999999
Q ss_pred cCCCCCccc-CCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec-----------CCCCeEEE
Q 018322 259 PASDATWNV-DPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA-----------HNADVNVI 326 (358)
Q Consensus 259 ~~~~~~~~~-~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~-----------h~~~V~~i 326 (358)
+.+...... ......+|...+.+..|+|+++.++++++.+++|+|||..++ .++..+.. +......|
T Consensus 90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (432)
T d1qksa2 90 LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL-EPKKIQSTRGMTYDEQEYHPEPRVAAI 168 (432)
T ss_dssp TTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC-CEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred eeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc-cceeeeccCCccccceeccCCCceeEE
Confidence 977443211 112234566677777889999967789999999999999985 45544432 34567788
Q ss_pred EEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 327 SWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 327 ~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.++|++..++++...++.|.+||...++
T Consensus 169 ~~s~dg~~~~vs~~~~~~i~~~d~~~~~ 196 (432)
T d1qksa2 169 LASHYRPEFIVNVKETGKILLVDYTDLN 196 (432)
T ss_dssp EECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred EECCCCCEEEEEEccCCeEEEEEccCCC
Confidence 9999997777888889999999987765
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.49 E-value=1.6e-12 Score=115.65 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=56.9
Q ss_pred CCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 275 HSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 275 h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
|...+..+.+++++. .++++. ++.|++||+.++ +.+..+ .+...+.+++|+|+| .+|++++.||.|+|||+++++
T Consensus 250 ~~~~~~~~~~~~~~~-~~~~~~-~~~v~v~d~~~~-~~~~~~-~~~~~~~~va~s~DG-~~l~v~~~d~~v~v~D~~t~~ 324 (346)
T d1jmxb_ 250 LTELYFTGLRSPKDP-NQIYGV-LNRLAKYDLKQR-KLIKAA-NLDHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDTLE 324 (346)
T ss_dssp CSSCEEEEEECSSCT-TEEEEE-ESEEEEEETTTT-EEEEEE-ECSSCCCEEEECSSS-SCEEEESBSSEEEEEETTTTE
T ss_pred ccceeEEEEEeCCCC-EEEEec-CCeEEEEECCCC-cEEEEE-cCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECccCC
Confidence 444566677888777 344444 467999999884 344444 355679999999999 888899999999999999875
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.48 E-value=4.7e-12 Score=110.57 Aligned_cols=163 Identities=12% Similarity=0.091 Sum_probs=121.4
Q ss_pred EecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCC
Q 018322 161 KVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPI 240 (358)
Q Consensus 161 ~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 240 (358)
.+...+.+..++|+|++..++++++.++.|++||+.. ...+..+..|. .+..++|+++
T Consensus 27 ~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t---------------------~~~~~~~~~~~-~~~~~~~~~~ 84 (301)
T d1l0qa2 27 TIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---------------------NNVIATVPAGS-SPQGVAVSPD 84 (301)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---------------------TEEEEEEECSS-SEEEEEECTT
T ss_pred EEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCC---------------------Cceeeeeeccc-cccccccccc
Confidence 3455567889999999966678888999999999987 45566676665 5689999999
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCC
Q 018322 241 TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 241 ~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
+...++++..++.+.+|+..+. ... ..+ .+...+.++.|+|++..+++++..++.+.+|+..+. ..+..+. +.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~-~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~ 157 (301)
T d1l0qa2 85 GKQVYVTNMASSTLSVIDTTSN-TVA---GTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTVS-VG 157 (301)
T ss_dssp SSEEEEEETTTTEEEEEETTTT-EEE---EEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-CC
T ss_pred cccccccccccceeeecccccc-eee---eec-cccccceEEEeecCCCeeeeeeccccceeeeecccc-ceeeecc-cC
Confidence 9845666777889999998763 221 222 345677889999999967778888999999999884 3444444 44
Q ss_pred CCeEEEEEeCCCCcEEEEEe-CCCCEEEEeCCCC
Q 018322 321 ADVNVISWNRLASCLLASGS-DDGTFSIHDLRLL 353 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs-~Dg~i~iwDlr~~ 353 (358)
..+..+.|+|++ ..+++++ ..+.+.+|+....
T Consensus 158 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 190 (301)
T d1l0qa2 158 RSPKGIAVTPDG-TKVYVANFDSMSISVIDTVTN 190 (301)
T ss_dssp SSEEEEEECTTS-SEEEEEETTTTEEEEEETTTT
T ss_pred CCceEEEeeccc-cceeeecccccccccccccce
Confidence 558899999999 5555554 5567777876654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.47 E-value=1e-13 Score=129.29 Aligned_cols=150 Identities=9% Similarity=-0.021 Sum_probs=107.5
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGDCNSCIYLWE 258 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs~dg~I~lwd 258 (358)
.++++.+.||+|+|||+.+ .+.+.++..|. .+++++|+|+|+ +|++++.|++|++||
T Consensus 33 ~~~V~~~~dg~v~vwD~~t---------------------~~~~~~l~~g~-~~~~vafSPDGk-~l~~~~~d~~v~vwd 89 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDS---------------------KKIVKVIDTGY-AVHISRMSASGR-YLLVIGRDARIDMID 89 (426)
T ss_dssp EEEEEETTTTEEEEEETTT---------------------CSEEEEEECCS-SEEEEEECTTSC-EEEEEETTSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCC---------------------CcEEEEEeCCC-CeeEEEECCCCC-EEEEEeCCCCEEEEE
Confidence 4568889999999999987 67778888774 689999999999 999999999999999
Q ss_pred cCCCCCcc-cCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC-----------eEEE
Q 018322 259 PASDATWN-VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD-----------VNVI 326 (358)
Q Consensus 259 ~~~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~-----------V~~i 326 (358)
+.+..... .......+|...+.+++|+|+++.+++++..++.+++||.... .+...+..|... ...+
T Consensus 90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i 168 (426)
T d1hzua2 90 LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAI 168 (426)
T ss_dssp TTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEE
T ss_pred ccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc-ceeEEeeccCCCccceeecCCCceeEE
Confidence 98754321 1112334677778888999999966777889999999999985 455555444433 3445
Q ss_pred EEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 327 SWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 327 ~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.+++++..++.+....+.+.+++...
T Consensus 169 ~~s~d~~~~~~~~~~~~~i~~~~~~~ 194 (426)
T d1hzua2 169 IASHEHPEFIVNVKETGKVLLVNYKD 194 (426)
T ss_dssp EECSSSSEEEEEETTTTEEEEEECSS
T ss_pred EECCCCCEEEEecCCCCeEEEEEecc
Confidence 55555533333344445555555544
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.45 E-value=5.9e-12 Score=117.05 Aligned_cols=173 Identities=6% Similarity=-0.024 Sum_probs=118.4
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE---EcCCCCCeEEEE
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK---FGGHKDEGYAID 236 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~ 236 (358)
++..| ..+..++|+|+| ++|++++.||+|++||+.... ...... ..+|...+.+++
T Consensus 57 ~l~~g-~~~~~vafSPDG-k~l~~~~~d~~v~vwd~~t~~-------------------~~~~~~i~~~~~~~~~~~s~~ 115 (426)
T d1hzua2 57 VIDTG-YAVHISRMSASG-RYLLVIGRDARIDMIDLWAKE-------------------PTKVAEIKIGIEARSVESSKF 115 (426)
T ss_dssp EEECC-SSEEEEEECTTS-CEEEEEETTSEEEEEETTSSS-------------------CEEEEEEECCSEEEEEEECCS
T ss_pred EEeCC-CCeeEEEECCCC-CEEEEEeCCCCEEEEEccCCc-------------------eeEEEEEeCCCCCcceEEeee
Confidence 34444 569999999999 788899999999999998721 111112 234556677888
Q ss_pred eCCCCCCeE-EEEeCCCcEEEEecCCCCCcccC-------CCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCC
Q 018322 237 WNPITTGRL-VTGDCNSCIYLWEPASDATWNVD-------PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRV 308 (358)
Q Consensus 237 ~s~~~~~~l-~sgs~dg~I~lwd~~~~~~~~~~-------~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~ 308 (358)
|+|++. +| +++..++.+.+||.......... ......+......+.+++++..++.+....+.+.+++...
T Consensus 116 ~spDG~-~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~ 194 (426)
T d1hzua2 116 KGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 194 (426)
T ss_dssp TTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS
T ss_pred ecCCCC-EEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc
Confidence 999998 65 55568899999998774321100 0011123445667778888875555555667777777766
Q ss_pred CCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 309 GKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 309 ~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
..........+...+..+.|+|++..++++...+..+.+|++.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~ 240 (426)
T d1hzua2 195 IDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR 240 (426)
T ss_dssp SSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE
T ss_pred ccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccccc
Confidence 5444445567888899999999994555555567789999988654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=2e-11 Score=108.21 Aligned_cols=174 Identities=6% Similarity=0.017 Sum_probs=119.1
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeC
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWN 238 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 238 (358)
.+.+.|.+.|..|+|+|++..+++++..++.|++|++..... .........+...+.+|+|+
T Consensus 30 ~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~------------------~~~~~~~~~~~~~p~~l~~s 91 (333)
T d1ri6a_ 30 TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG------------------ALTFAAESALPGSLTHISTD 91 (333)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC------------------CEEEEEEEECSSCCSEEEEC
T ss_pred EEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC------------------cEEEeeecccCCCceEEEEc
Confidence 566789999999999999965667777799999999876211 00111122234467789999
Q ss_pred CCCCCeEEEEe-CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE--
Q 018322 239 PITTGRLVTGD-CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS-- 315 (358)
Q Consensus 239 ~~~~~~l~sgs-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~-- 315 (358)
|++. +|++++ .++.|.+|+........ ......+...+.++.++|++..++.....+..|.+|+..........
T Consensus 92 pDg~-~l~v~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 168 (333)
T d1ri6a_ 92 HQGQ-FVFVGSYNAGNVSVTRLEDGLPVG--VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP 168 (333)
T ss_dssp TTSS-EEEEEETTTTEEEEEEEETTEEEE--EEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred CCCC-EEeecccCCCceeeecccccccee--cccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeec
Confidence 9998 777776 47789999876532211 12334466778889999999945555556678999998874332211
Q ss_pred ---EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 316 ---FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 316 ---~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
..........++|++++...+.+....+...+|+....
T Consensus 169 ~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~ 209 (333)
T d1ri6a_ 169 AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 209 (333)
T ss_dssp EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred eeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccc
Confidence 12345567899999999445555556677888876543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=7.2e-12 Score=111.13 Aligned_cols=154 Identities=9% Similarity=0.019 Sum_probs=105.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE-EEeCCCcEEEE
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV-TGDCNSCIYLW 257 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~-sgs~dg~I~lw 257 (358)
.++++++.+++|+||++.... ...+.....|...+.+|+|+|+++ +|+ ++..++.|.+|
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~-------------------~l~~~~~~~~~~~v~~la~spDG~-~L~v~~~~d~~i~~~ 64 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEG-------------------ALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRVLAY 64 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTS-------------------CEEEEEEEECSSCCCCEEECTTSS-EEEEEETTTTEEEEE
T ss_pred EEEEECCCCCcEEEEEEcCCC-------------------CeEEEEEEcCCCCEeEEEEeCCCC-EEEEEECCCCeEEEE
Confidence 366888899999999997621 112223346778899999999998 764 55568999999
Q ss_pred ecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-eeEEEecCCCCeEEEEEeCCCCcEE
Q 018322 258 EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-ALTSFKAHNADVNVISWNRLASCLL 336 (358)
Q Consensus 258 d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-~~~~~~~h~~~V~~i~~~p~~~~~l 336 (358)
++........ ......+...+..++|+|+++.+++++..++.|++|+...... .......+...+.++.|+|++ .++
T Consensus 65 ~i~~~~~~~~-~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~-~~~ 142 (333)
T d1ri6a_ 65 RIAPDDGALT-FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN-RTL 142 (333)
T ss_dssp EECTTTCCEE-EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS-SEE
T ss_pred EEeCCCCcEE-EeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc-eee
Confidence 9976432211 1112234456778999999994444444688999998776321 222335567778899999999 555
Q ss_pred EEEe-CCCCEEEEeCCCCC
Q 018322 337 ASGS-DDGTFSIHDLRLLK 354 (358)
Q Consensus 337 asgs-~Dg~i~iwDlr~~~ 354 (358)
++++ .+..|.+|++....
T Consensus 143 ~~~~~~~~~i~~~~~~~~~ 161 (333)
T d1ri6a_ 143 WVPALKQDRICLFTVSDDG 161 (333)
T ss_dssp EEEEGGGTEEEEEEECTTS
T ss_pred eccccccceeeEEEeccCC
Confidence 5554 56679999986643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.28 E-value=2.8e-11 Score=106.94 Aligned_cols=148 Identities=13% Similarity=0.053 Sum_probs=104.9
Q ss_pred cEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcC--CCCCeEEEEeCCCCCCeE-EEEeCCCcEE
Q 018322 179 HICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGG--HKDEGYAIDWNPITTGRL-VTGDCNSCIY 255 (358)
Q Consensus 179 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~~l-~sgs~dg~I~ 255 (358)
.++++++.|++|+|||+.+ .+.+..+.. +...+.+++|+|++. +| ++++.++.|.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s---------------------~~~~~~i~~~~~~~~~~~i~~spDg~-~l~v~~~~~~~v~ 59 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEK---------------------MAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLV 59 (337)
T ss_dssp EEEEEEETTTEEEEEETTT---------------------TEEEEEEECTTCTTCCCCEEECTTSS-EEEEEETTTTEEE
T ss_pred eEEEEEcCCCEEEEEECCC---------------------CeEEEEEECCCCCCCccEEEECCCCC-EEEEEECCCCeEE
Confidence 5899999999999999987 455555544 344678999999998 65 6777899999
Q ss_pred EEecCCCCCcc-cCCCccccCCCcEEEEEECCCCCCEEEEEE------------CCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 256 LWEPASDATWN-VDPNPFIGHSASVEDLQWSPTEPDVFASCS------------VDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 256 lwd~~~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~las~s------------~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
+||+.++.... ........+...+..++|+|++. .++++. .++.+.+||..++ .....+. +...
T Consensus 60 v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~-~~~~ 136 (337)
T d1pbyb_ 60 KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETL-SRRKAFE-APRQ 136 (337)
T ss_dssp EEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEEEEE-CCSS
T ss_pred EEECCCCcEEEEEecCCCcccccceeeEEEcCCCc-EEEEeecCCcceeeeccccccceeeccccCC-eEEEecc-ccCC
Confidence 99998743211 00111112234456789999999 555554 4678999999884 3444444 4556
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
++.++|+|++ .++++++. .+.+||..+.+
T Consensus 137 ~~~~~~s~dg-~~l~~~~~--~~~~~d~~~~~ 165 (337)
T d1pbyb_ 137 ITMLAWARDG-SKLYGLGR--DLHVMDPEAGT 165 (337)
T ss_dssp CCCEEECTTS-SCEEEESS--SEEEEETTTTE
T ss_pred ceEEEEcCCC-CEEEEEcC--CcceeeeecCc
Confidence 8899999999 77777764 47889987653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.13 E-value=2.1e-10 Score=101.62 Aligned_cols=157 Identities=12% Similarity=-0.036 Sum_probs=105.8
Q ss_pred EEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeEEEEeCCCCCCeEEEEe
Q 018322 171 IRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPITTGRLVTGD 249 (358)
Q Consensus 171 i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~l~sgs 249 (358)
++|++.+ .++++++.+++|++||+.+ .+.+.++. .|...+.+|+|+|++...++++.
T Consensus 2 ~a~~~~~-~~l~~~~~~~~v~v~D~~t---------------------~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~ 59 (346)
T d1jmxb_ 2 PALKAGH-EYMIVTNYPNNLHVVDVAS---------------------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 59 (346)
T ss_dssp CCCCTTC-EEEEEEETTTEEEEEETTT---------------------TEEEEEEECSSCCSSCEEEECTTSSEEEEEET
T ss_pred ccCCCCC-cEEEEEcCCCEEEEEECCC---------------------CCEEEEEEcCCCCCcceEEECCCCCEEEEEEC
Confidence 3577877 7999999999999999987 46666665 45567789999999983346667
Q ss_pred CCCcEEEEecCCCCCccc--CCCccccCCCcEEEEEECCCCCCEEEEEE------------CCCcEEEEECCCCCCe-eE
Q 018322 250 CNSCIYLWEPASDATWNV--DPNPFIGHSASVEDLQWSPTEPDVFASCS------------VDGHIAIWDTRVGKSA-LT 314 (358)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~--~~~~~~~h~~~V~~v~~sp~~~~~las~s------------~Dg~I~iwD~r~~~~~-~~ 314 (358)
.++.|++||+.+...... .......+...+..++|+|++. .++.++ .++.+.+||..++... ..
T Consensus 60 ~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 138 (346)
T d1jmxb_ 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV 138 (346)
T ss_dssp TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS
T ss_pred CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceEEEEecccceeeeEE
Confidence 889999999977422110 0011122234566799999998 444443 4788999998774321 11
Q ss_pred EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 315 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 315 ~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
........+..+.+++++ .+++++ +.+.+|++.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~ 174 (346)
T d1jmxb_ 139 RTFPMPRQVYLMRAADDG-SLYVAG---PDIYKMDVKTGK 174 (346)
T ss_dssp EEEECCSSCCCEEECTTS-CEEEES---SSEEEECTTTCC
T ss_pred EeeeccCceEEEEecCCC-EEEEeC---CcceEEEccCCC
Confidence 122234456677788877 666543 458899987654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.02 E-value=1.2e-08 Score=91.55 Aligned_cols=166 Identities=11% Similarity=0.019 Sum_probs=108.9
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc------CCCCCeEEEE
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG------GHKDEGYAID 236 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~ 236 (358)
.|.....++.++|++..++++.+.||++.+|+.... ....... ++......+.
T Consensus 162 ~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~ 220 (373)
T d2madh_ 162 QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG---------------------AAGAGLVGAMLTAAQNLLTQPAQ 220 (373)
T ss_pred EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCc---------------------eeeEEEeeeccccCccceeeeEE
Confidence 445567788999999888899999999999998762 1111111 1222334455
Q ss_pred eCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccC----------CCcEEEEEECCCCCC---------EEEEEEC
Q 018322 237 WNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGH----------SASVEDLQWSPTEPD---------VFASCSV 297 (358)
Q Consensus 237 ~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h----------~~~V~~v~~sp~~~~---------~las~s~ 297 (358)
+.+.+ .++..+.++.+++|+......... .....+ ......++++|++.. .+++...
T Consensus 221 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 296 (373)
T d2madh_ 221 ANKSG--RIVWPVYSGKILQADISAAGATNK--APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAA 296 (373)
T ss_pred ECCCc--eEEEecCCceEEEEEcCCCeEEEE--EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecC
Confidence 55544 556666788999999876432111 111111 122334555555542 3455666
Q ss_pred CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCc-EEEEEeCCCCEEEEeCCCCCC
Q 018322 298 DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASC-LLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 298 Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~-~lasgs~Dg~i~iwDlr~~~~ 355 (358)
++.|.+||+.++ ..+..+ .+...+..++|+|+|.. ++++++.|++|+|||+++++.
T Consensus 297 ~~~v~~~d~~t~-~~~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~ 353 (373)
T d2madh_ 297 AKEVTSVTGLVG-QTSSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCeEEEEECCCC-cEEEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 788999999885 355544 46677999999999943 457899999999999998864
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.01 E-value=8.9e-09 Score=91.63 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=35.8
Q ss_pred cEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCc-EEEEEeCCCCEEEEeCCCCCC
Q 018322 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASC-LLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~-~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.|.+||+.++ +.+..+. +...+.+++|+|+|.. ++++++.|+.|++||+++++.
T Consensus 281 ~v~v~d~~t~-~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~ 335 (355)
T d2bbkh_ 281 FVVVLDAKTG-ERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 335 (355)
T ss_dssp EEEEEETTTC-CEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred eEEEEeCCCC-cEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence 3445555543 2333332 2234788999999943 567788899999999998763
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.95 E-value=1.1e-07 Score=85.02 Aligned_cols=152 Identities=15% Similarity=0.043 Sum_probs=98.7
Q ss_pred eEEEEcCCCCcEEEEEe----------CCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCe------
Q 018322 169 NRIRAMTQNPHICASWA----------DTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEG------ 232 (358)
Q Consensus 169 ~~i~~~p~~~~~lat~s----------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v------ 232 (358)
..+.|+|++ ..|++++ .++.|.+||... .+++..+..+....
T Consensus 69 ~~~a~SpDG-~~l~va~~~~~~~~~~~~~~~v~v~D~~t---------------------~~~~~~~~~~~~~~~~~~~~ 126 (373)
T d2madh_ 69 PNPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVT---------------------FLPIADIELPDAPRFDVGPY 126 (373)
T ss_pred ccEEEcCCC-CEEEEEeecCCcccccccceEEEEEECCC---------------------CcEEEEEecCCcceeEeccC
Confidence 378999999 4555543 467899999987 34444444443332
Q ss_pred -EEEEeCCCCCCeEEEE--eCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCC
Q 018322 233 -YAIDWNPITTGRLVTG--DCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG 309 (358)
Q Consensus 233 -~~l~~s~~~~~~l~sg--s~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~ 309 (358)
..+.|++++. .++.. ..++.+.+|+.... ....+.....++.++|++...+++.+.|+.+.+|+....
T Consensus 127 ~~~~~~s~dg~-~~~v~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~ 197 (373)
T d2madh_ 127 SWMNANTPNNA-DLLFFQFAAGPAVGLVVQGGS--------SDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG 197 (373)
T ss_pred CCcEEEEeCCC-cEEEEEEcCCCceEEeeccCC--------eEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCc
Confidence 3567777776 44333 34567777876542 233445567788999999888899999999999999874
Q ss_pred CCeeEEEec------CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 310 KSALTSFKA------HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 310 ~~~~~~~~~------h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
. ....... +......+.+.+++ .++..+.++.+.+|+.....
T Consensus 198 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~ 245 (373)
T d2madh_ 198 A-AGAGLVGAMLTAAQNLLTQPAQANKSG--RIVWPVYSGKILQADISAAG 245 (373)
T ss_pred e-eeEEEeeeccccCccceeeeEEECCCc--eEEEecCCceEEEEEcCCCe
Confidence 3 3332221 11223444555555 45566678899999987653
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.88 E-value=1.1e-08 Score=95.61 Aligned_cols=148 Identities=9% Similarity=0.071 Sum_probs=103.0
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE-----EcCCCCCeEEEEeCCCCCCe
Q 018322 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK-----FGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~h~~~v~~l~~s~~~~~~ 244 (358)
.++|.+++ .++. ..++.|.+||+... +.... +..|...+.++.|||++. +
T Consensus 21 ~~~W~~d~-~~~~--~~~~~~~~~~~~t~---------------------~~~~~~~~~~~~~~~~~i~~~~~SpDg~-~ 75 (470)
T d2bgra1 21 SLRWISDH-EYLY--KQENNILVFNAEYG---------------------NSSVFLENSTFDEFGHSINDYSISPDGQ-F 75 (470)
T ss_dssp CCEECSSS-EEEE--ESSSCEEEEETTTC---------------------CEEEEECTTTTTTSSSCCCEEEECTTSS-E
T ss_pred CCEeCCCC-EEEE--EcCCcEEEEECCCC---------------------CEEEEEchhhhhhccCccceeEECCCCC-E
Confidence 46788887 5554 46789999999873 22222 344556899999999998 8
Q ss_pred EEEEeC---------CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEE
Q 018322 245 LVTGDC---------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTS 315 (358)
Q Consensus 245 l~sgs~---------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~ 315 (358)
|+.++. ++.+.|||+.++.. ..+..|...+..+.|||+|. .+|.. .++.+.+|+...+......
T Consensus 76 i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-----~~l~~~~~~~~~~~~SPDG~-~ia~~-~~~~l~~~~~~~g~~~~~t 148 (470)
T d2bgra1 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQL-----ITEERIPNNTQWVTWSPVGH-KLAYV-WNNDIYVKIEPNLPSYRIT 148 (470)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEE-----CCSSCCCTTEEEEEECSSTT-CEEEE-ETTEEEEESSTTSCCEECC
T ss_pred EEEEECCcceeeeccCceEEEEECCCCcc-----cccccCCccccccccccCcc-eeeEe-ecccceEEECCCCceeeee
Confidence 887743 56789999987422 45677888999999999999 67765 4678999998875422111
Q ss_pred Eec-----------------CCCCeEEEEEeCCCCcEEEEEeCCC-CEEEEeC
Q 018322 316 FKA-----------------HNADVNVISWNRLASCLLASGSDDG-TFSIHDL 350 (358)
Q Consensus 316 ~~~-----------------h~~~V~~i~~~p~~~~~lasgs~Dg-~i~iwDl 350 (358)
... ..+....+.|+|+| ..||....|. .+..|.+
T Consensus 149 ~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDG-k~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEE
T ss_pred eccCCCcccccccceeeeeeecCCccccEECCCC-CccceeEecCCcCceEEE
Confidence 111 12234668899999 7787776543 3555443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.68 E-value=3.4e-07 Score=82.22 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=40.6
Q ss_pred cEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCc-EEEEEeCCCCEEEEeCCCCCC
Q 018322 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASC-LLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~-~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.|.+||..++ +.+..+. +...+..++|+|++.. +++++..++.|++||..+++.
T Consensus 295 ~v~v~D~~t~-~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~ 349 (368)
T d1mdah_ 295 NTSSVTASVG-QTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EEEEEESSSC-CEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred eEEEEECCCC-cEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 4888999885 3444443 3356889999999844 567888899999999988753
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=1.8e-05 Score=66.92 Aligned_cols=171 Identities=8% Similarity=0.033 Sum_probs=102.2
Q ss_pred EEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 160 RKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 160 ~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
....+.+......|+|++..++......+...++..... ..................|++
T Consensus 77 ~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~ 136 (269)
T d2hqsa1 77 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA--------------------SGQIRQVTDGRSNNTEPTWFP 136 (269)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--------------------TCCEEECCCCSSCEEEEEECT
T ss_pred EEeeeecccccceecCCCCeeeEeeecCCccceeecccc--------------------cccceeeeecccccccccccc
Confidence 445678888999999999655555555555544443331 122222333444555667888
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 240 ITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 240 ~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
.+...+++...+|...+|......... .....+........|+|++..++.+....+...+|........ ..+..+
T Consensus 137 ~~~~~~~~~~~~g~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~ 212 (269)
T d2hqsa1 137 DSQNLAFTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLSS 212 (269)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTSSCC---EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-EEECCC
T ss_pred ccccceecccccCCceEeeeecccccc---eeeecccccccccccccccceeEEEeecCCceeeeEeeccccc-ceEeec
Confidence 877566666667655555443322211 2233455677788999999955555566666666655442222 334445
Q ss_pred CCCeEEEEEeCCCCcEEEEEeC--CCCEEEEeCCCCC
Q 018322 320 NADVNVISWNRLASCLLASGSD--DGTFSIHDLRLLK 354 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~--Dg~i~iwDlr~~~ 354 (358)
........|+|+|..++.+... ...|.++++....
T Consensus 213 ~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 213 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 249 (269)
T ss_dssp SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred CccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 5567788999999444444433 3468889987554
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.51 E-value=9e-08 Score=84.86 Aligned_cols=149 Identities=13% Similarity=0.072 Sum_probs=91.2
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc--CCCCCeEEEEeCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG--GHKDEGYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~s~~~ 241 (358)
+...+....+.+.+ ..++.++.++.+++|++............ ........ ........+++++++
T Consensus 193 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~p~~~~~~~~~~d~ 260 (355)
T d2bbkh_ 193 DEFLINHPAYSQKA-GRLVWPTYTGKIHQIDLSSGDAKFLPAVE-----------ALTEAERADGWRPGGWQQVAYHRAL 260 (355)
T ss_dssp TSCBCSCCEEETTT-TEEEEEBTTSEEEEEECTTSSCEECCCEE-----------SSCHHHHHTTEEECSSSCEEEETTT
T ss_pred ecceeeeccccCCC-CeEEEecCCCeEEEEecCCCcEEEEeccC-----------CcccceEeeeeeccceEEEEEeCCC
Confidence 34445556666666 57778889999999998763211100000 00000000 001123457888888
Q ss_pred CCeEEEEeCC----------CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCC-EEEEEECCCcEEEEECCCCC
Q 018322 242 TGRLVTGDCN----------SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPD-VFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 242 ~~~l~sgs~d----------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~-~las~s~Dg~I~iwD~r~~~ 310 (358)
. .++....+ ..|.+||+.+... . ..+. +...+.+++|+|+++. ++++++.|+.|++||++++
T Consensus 261 ~-~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~-~---~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg- 333 (355)
T d2bbkh_ 261 D-RIYLLVDQRDEWRHKTASRFVVVLDAKTGER-L---AKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG- 333 (355)
T ss_dssp T-EEEEEEEECCTTCTTSCEEEEEEEETTTCCE-E---EEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC-
T ss_pred C-eEEEEeccCCceeecCCCCeEEEEeCCCCcE-E---EEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-
Confidence 7 55544322 3699999987432 2 2222 3456889999999975 4667788999999999986
Q ss_pred CeeEEEecCCCCeEEEEEeCC
Q 018322 311 SALTSFKAHNADVNVISWNRL 331 (358)
Q Consensus 311 ~~~~~~~~h~~~V~~i~~~p~ 331 (358)
+.+.++..+.....+|.+.+.
T Consensus 334 ~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 334 EELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp CEEEEECCCCSSCCEEECCCC
T ss_pred CEEEEEeCcCCCccEEEeCCC
Confidence 577778777666666666544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.45 E-value=3.2e-07 Score=85.26 Aligned_cols=115 Identities=14% Similarity=0.162 Sum_probs=88.7
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcc-cCCCccccCCCcEEEEEECCCCCCEEEEEEC---------CCcEE
Q 018322 233 YAIDWNPITTGRLVTGDCNSCIYLWEPASDATWN-VDPNPFIGHSASVEDLQWSPTEPDVFASCSV---------DGHIA 302 (358)
Q Consensus 233 ~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~las~s~---------Dg~I~ 302 (358)
..+.|.+++. ++.. .++.|.+||+.++.... .....+..|...|.+++|||+++ .|+.++. ++.+.
T Consensus 20 ~~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~s~~~~~~ 95 (470)
T d2bgra1 20 YSLRWISDHE-YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRHSYTASYD 95 (470)
T ss_dssp CCCEECSSSE-EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS-EEEEEEEEEECSSSCEEEEEE
T ss_pred cCCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCC-EEEEEECCcceeeeccCceEE
Confidence 4688999886 6654 47889999998854322 23356677888999999999999 6666643 56789
Q ss_pred EEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 303 IWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 303 iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
|||+.++ .+..+..|...+..+.|+|+| ..||.. .++.+.+|++..++.
T Consensus 96 l~d~~~~--~~~~l~~~~~~~~~~~~SPDG-~~ia~~-~~~~l~~~~~~~g~~ 144 (470)
T d2bgra1 96 IYDLNKR--QLITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPS 144 (470)
T ss_dssp EEETTTT--EECCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCC
T ss_pred EEECCCC--cccccccCCccccccccccCc-ceeeEe-ecccceEEECCCCce
Confidence 9999974 355677888899999999999 777775 467899999887653
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=2.8e-05 Score=65.67 Aligned_cols=165 Identities=7% Similarity=0.032 Sum_probs=95.3
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 242 (358)
.+...+..-+|+|+|..++.+....+...+|.+.. .......+..+........|+|++.
T Consensus 36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~spdg~ 95 (269)
T d2hqsa1 36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL--------------------ANGAVRQVASFPRHNGAPAFSPDGS 95 (269)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEET--------------------TTCCEEEEECCSSCEEEEEECTTSS
T ss_pred cCCCceeeeEECCCCCEEEEEEeeccCcceeeeec--------------------ccCceeEEeeeecccccceecCCCC
Confidence 45677889999999955544544444434443322 1233445666777888999999998
Q ss_pred CeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
.++......+...++......... ..............+++.+...+++...+|...||...........+..+...
T Consensus 96 ~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ 172 (269)
T d2hqsa1 96 KLAFALSKTGSLNLYVMDLASGQI---RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQ 172 (269)
T ss_dssp EEEEEECTTSSCEEEEEETTTCCE---EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSE
T ss_pred eeeEeeecCCccceeecccccccc---eeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccc
Confidence 333344445444444432211111 12222344455567888887567776677765555443322334445556666
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
.....|+|++..++.+....+...+|.+
T Consensus 173 ~~~~~~spdg~~~~~~~~~~~~~~i~~~ 200 (269)
T d2hqsa1 173 NQDADVSSDGKFMVMVSSNGGQQHIAKQ 200 (269)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred ccccccccccceeEEEeecCCceeeeEe
Confidence 7788999999444555555555555543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.41 E-value=9.8e-06 Score=72.72 Aligned_cols=170 Identities=9% Similarity=-0.029 Sum_probs=102.8
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEE--EcCCCCCeEEEEeCCCCC
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVK--FGGHKDEGYAIDWNPITT 242 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~s~~~~ 242 (358)
...+.++.|+|++..++++......|.+|++..... ...... ..........+.|+|+++
T Consensus 144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~------------------~~~~~~~~~~~~g~gPr~i~f~pdg~ 205 (365)
T d1jofa_ 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE------------------VELVGSVDAPDPGDHPRWVAMHPTGN 205 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC------------------EEEEEEEECSSTTCCEEEEEECTTSS
T ss_pred CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCc------------------eeeccceeecCCCCceEEEEECCCCc
Confidence 345789999999965666655566888888665210 011111 122345678899999998
Q ss_pred CeEEEEeCCCcEEEEecCCCCCccc-C-------C-------CccccCCCcEEEEEECCCCCCEEEEEECCC-----cEE
Q 018322 243 GRLVTGDCNSCIYLWEPASDATWNV-D-------P-------NPFIGHSASVEDLQWSPTEPDVFASCSVDG-----HIA 302 (358)
Q Consensus 243 ~~l~sgs~dg~I~lwd~~~~~~~~~-~-------~-------~~~~~h~~~V~~v~~sp~~~~~las~s~Dg-----~I~ 302 (358)
-..++.-.+++|.+|++........ . . .....+......+.++|+++.++++...+. .|.
T Consensus 206 ~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~ 285 (365)
T d1jofa_ 206 YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIA 285 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEE
T ss_pred eEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEE
Confidence 3335566788999999865322100 0 0 001122334678999999995555544333 377
Q ss_pred EEECCCCCCeeE--EE---ecCCCCeEEEEEeC-CCCcEEEEEeCCCCEEEEeCCC
Q 018322 303 IWDTRVGKSALT--SF---KAHNADVNVISWNR-LASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 303 iwD~r~~~~~~~--~~---~~h~~~V~~i~~~p-~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
.|++........ .+ .......+.++++| +|..+++++..++.|.+|+++.
T Consensus 286 ~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 286 GFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred EEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 887765322111 11 12344567799998 6734555556789999998653
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.32 E-value=1.7e-06 Score=77.50 Aligned_cols=162 Identities=10% Similarity=-0.109 Sum_probs=97.4
Q ss_pred CCCceeEEEEcCCCCcE--EEEEeCCCc--EEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCC
Q 018322 164 HQGCVNRIRAMTQNPHI--CASWADTGH--VQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNP 239 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~--lat~s~dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 239 (358)
+.+....+...+++... .++...+|. |.+||... .+.+..+.++... .++|+|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~---------------------~~~~~~~~~~~~~--~~a~sp 74 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGC---------------------GVTLGHSLGAFLS--LAVAGH 74 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTT---------------------TEEEEEEEECTTC--EEEECT
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCC---------------------CcEEEEEeCCCCC--cceECC
Confidence 45555666666766433 333344555 55667655 4555666665544 589999
Q ss_pred CCCCeEEEEe----------CCCcEEEEecCCCCCcccC---CCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 240 ITTGRLVTGD----------CNSCIYLWEPASDATWNVD---PNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 240 ~~~~~l~sgs----------~dg~I~lwd~~~~~~~~~~---~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
++. .|++.+ .++.|.+||..+....... .............++|+|+++.++++...++.|.+||+
T Consensus 75 Dg~-~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~ 153 (368)
T d1mdah_ 75 SGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSV 153 (368)
T ss_dssp TSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEE
T ss_pred CCC-EEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence 998 776643 4678999999774321100 00000111223468999999966555567899999999
Q ss_pred CCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 307 RVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
.++ ..+..+..+.... +.+.+...++..+.||.+.+|++....
T Consensus 154 ~~~-~~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~ 196 (368)
T d1mdah_ 154 PGA-SDDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp TTT-EEEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred CCC-cEeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCc
Confidence 984 4555554444322 223333566667778888777776543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.21 E-value=0.00013 Score=65.03 Aligned_cols=77 Identities=8% Similarity=0.043 Sum_probs=53.8
Q ss_pred cEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee--EEE--ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 278 SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL--TSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 278 ~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~--~~~--~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.+.++.|+|+++.++++......|.+|+........ ... .........++|+|++..+.++.-.+++|.+|++...
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence 478999999999555555455688888866532221 112 2235678999999999555566767899999998654
Q ss_pred C
Q 018322 354 K 354 (358)
Q Consensus 354 ~ 354 (358)
+
T Consensus 226 ~ 226 (365)
T d1jofa_ 226 T 226 (365)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.15 E-value=6.1e-06 Score=75.58 Aligned_cols=164 Identities=8% Similarity=-0.031 Sum_probs=103.1
Q ss_pred cCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeEEEEeCCCC
Q 018322 163 AHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPIT 241 (358)
Q Consensus 163 ~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~ 241 (358)
.|.-.+....+.|+|..++++...+++|.++|+.. .+....+. .+....++++|+|++
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t---------------------~k~~~ii~iP~g~gphgi~~spdg 127 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDI---------------------MKTDKITHIPNVQAIHGLRLQKVP 127 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTT---------------------TEEEEEEECTTCCCEEEEEECCSS
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCC---------------------CcEeeEEecCCCCCccceEEeccC
Confidence 35555666667888966778878889999999987 33444433 456689999999988
Q ss_pred CCeEEEEeCCCcE------------------EEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC------
Q 018322 242 TGRLVTGDCNSCI------------------YLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV------ 297 (358)
Q Consensus 242 ~~~l~sgs~dg~I------------------~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~------ 297 (358)
+...+++.....+ ..+|..+.... ..+. -......+.|+|++...++++..
T Consensus 128 ~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~----~qI~-v~~~p~~v~~spdGk~a~vt~~nse~~~~ 202 (441)
T d1qnia2 128 KTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVA----WQVI-VDGNLDNTDADYTGKYATSTCYNSERAVD 202 (441)
T ss_dssp BCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEE----EEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSS
T ss_pred CEEEEEeccCCcccccCcccccccccccceEEeecCccceee----EEEe-cCCCccceEECCCCCEEEEEecCCCceEE
Confidence 6433433333333 23554432110 1111 12346778999999955555533
Q ss_pred ----------------------------------CCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCC
Q 018322 298 ----------------------------------DGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDG 343 (358)
Q Consensus 298 ----------------------------------Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg 343 (358)
++.+.|++... ...+..+....+ ...+.++|+|.++++++..++
T Consensus 203 id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~-~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~ 280 (441)
T d1qnia2 203 LAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGE-SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSP 280 (441)
T ss_dssp HHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSS-CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSS
T ss_pred EeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccC-CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCC
Confidence 23444444333 234445544444 467899999966678888999
Q ss_pred CEEEEeCCCCC
Q 018322 344 TFSIHDLRLLK 354 (358)
Q Consensus 344 ~i~iwDlr~~~ 354 (358)
+|.|||+.+++
T Consensus 281 tvsv~d~~k~~ 291 (441)
T d1qnia2 281 TVSVIAIDKLD 291 (441)
T ss_dssp BEEEEEGGGHH
T ss_pred cEEEEEeehhh
Confidence 99999987643
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.10 E-value=6.8e-05 Score=68.42 Aligned_cols=72 Identities=7% Similarity=-0.011 Sum_probs=53.1
Q ss_pred EEEEEECCCCCCEEEEEECCCcEEEEECCCCC----------CeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEE
Q 018322 279 VEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK----------SALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIH 348 (358)
Q Consensus 279 V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~----------~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iw 348 (358)
...+.++|+|+++++++..+++|.+||+.... .++.......-.....+|.+.+ +.+.|...|.+|..|
T Consensus 260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g-~~yts~~~ds~v~kw 338 (441)
T d1qnia2 260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRG-NAYTTLFIDSQVCKW 338 (441)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEE
T ss_pred ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCc-eEEEcccccceEEEe
Confidence 46789999999888889999999999986511 1111111112234556899999 889999999999999
Q ss_pred eCC
Q 018322 349 DLR 351 (358)
Q Consensus 349 Dlr 351 (358)
++.
T Consensus 339 ~~~ 341 (441)
T d1qnia2 339 NIA 341 (441)
T ss_dssp EHH
T ss_pred ccc
Confidence 973
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.07 E-value=0.00031 Score=60.63 Aligned_cols=171 Identities=8% Similarity=-0.022 Sum_probs=115.3
Q ss_pred CCeEEEEEecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeE
Q 018322 154 TPILQLRKVAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGY 233 (358)
Q Consensus 154 ~~~~~~~~~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 233 (358)
.|.......+-...+..+++.|+| +++++...+++|+.|+... . ...+......+.
T Consensus 16 ~~~~v~~~~p~~~~~e~iAv~pdG-~l~vt~~~~~~I~~i~p~g----------------------~-~~~~~~~~~~~~ 71 (302)
T d2p4oa1 16 APAKIITSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDG----------------------N-QQIHATVEGKVS 71 (302)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTC----------------------C-EEEEEECSSEEE
T ss_pred CcccEEEECCCCCCcCCEEECCCC-CEEEEeCCCCEEEEEeCCC----------------------C-EEEEEcCCCCcc
Confidence 343334444544568899999999 7999989899888887554 1 223344556789
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCee
Q 018322 234 AIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSAL 313 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~ 313 (358)
+|+|++++. ++++...++.+.+|+......... ...........+++.+.+++. ++++-+..+.+..+|...+...+
T Consensus 72 gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~ 148 (302)
T d2p4oa1 72 GLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVE-TLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSI 148 (302)
T ss_dssp EEEECTTSC-EEEEEECTTSCEEEEEECTTSCEE-EEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEE
T ss_pred eEEEcCCCC-eEEEecCCceEEEEEeccccccee-eccccCCccccceeEEccCCC-EEeeccccccceeeeccCCccee
Confidence 999999998 888888888888888755322110 001112345688999999997 88888888999999887643222
Q ss_pred EEEe---------cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 314 TSFK---------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 314 ~~~~---------~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.... ......+.+.+.. + .++++.+..+.|..+++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~ngi~~~~-~-~l~~~~~~~~~i~~~~~~~~ 195 (302)
T d2p4oa1 149 WLEHPMLARSNSESVFPAANGLKRFG-N-FLYVSNTEKMLLLRIPVDST 195 (302)
T ss_dssp EEECGGGSCSSTTCCSCSEEEEEEET-T-EEEEEETTTTEEEEEEBCTT
T ss_pred EecCCccceeeccCcccccccccccC-C-ceeeecCCCCeEEecccccc
Confidence 1111 1122457777764 2 57777778888888887654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.93 E-value=0.00068 Score=57.66 Aligned_cols=158 Identities=11% Similarity=0.125 Sum_probs=108.0
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEE--cCCCCCeEEEEeCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKF--GGHKDEGYAIDWNPIT 241 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~s~~~ 241 (358)
.......+.+.+++ .++++....+.+.+++... +.+..+ ..+......+++.+.+
T Consensus 112 ~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g----------------------~~~~~~g~~~~~~~~~~i~~d~~g 168 (279)
T d1q7fa_ 112 ILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNG----------------------NVLHKFGCSKHLEFPNGVVVNDKQ 168 (279)
T ss_dssp TCSCEEEEEECTTS-CEEEEETTTTEEEEECTTS----------------------CEEEEEECTTTCSSEEEEEECSSS
T ss_pred cccccceeccccCC-cEEEEeeccceeeEeccCC----------------------ceeecccccccccccceeeeccce
Confidence 44566778888877 5666666667777776544 333333 2345577889999888
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCcc--ccCCCcEEEEEECCCCCCEEEEEEC-CCcEEEEECCCCCCeeEEEec
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPF--IGHSASVEDLQWSPTEPDVFASCSV-DGHIAIWDTRVGKSALTSFKA 318 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~v~~sp~~~~~las~s~-Dg~I~iwD~r~~~~~~~~~~~ 318 (358)
. .+++....+.|++|+... ... ..+ .++......|++.+++. ++++-+. ++.|.+|+.. + ..+..+..
T Consensus 169 ~-i~v~d~~~~~V~~~d~~G--~~~---~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~-G-~~~~~~~~ 239 (279)
T d1q7fa_ 169 E-IFISDNRAHCVKVFNYEG--QYL---RQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQD-G-QLISALES 239 (279)
T ss_dssp E-EEEEEGGGTEEEEEETTC--CEE---EEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTT-S-CEEEEEEE
T ss_pred e-EEeeeccccceeeeecCC--cee---eeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCC-C-CEEEEEeC
Confidence 6 778888889999999743 222 112 23455678999999998 7776543 5579999853 3 34555532
Q ss_pred --CCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 319 --HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 319 --h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.......|++.+++ .++++ +.++.|++|....+.+
T Consensus 240 ~~~~~~p~~vav~~dG-~l~V~-~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 240 KVKHAQCFDVALMDDG-SVVLA-SKDYRLYIYRYVQLAP 276 (279)
T ss_dssp SSCCSCEEEEEEETTT-EEEEE-ETTTEEEEEECSCCCC
T ss_pred CCCCCCEeEEEEeCCC-cEEEE-eCCCeEEEEEeeeecC
Confidence 23457889999999 66554 5788999999887643
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.81 E-value=0.00019 Score=62.01 Aligned_cols=114 Identities=14% Similarity=0.019 Sum_probs=87.6
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCC
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGK 310 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~ 310 (358)
.+..++++|+|. ++++...+++|..|+... .. ..+......+.+++|+|++. ++++...++.+.+|+.....
T Consensus 29 ~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g--~~----~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~ 100 (302)
T d2p4oa1 29 FLENLASAPDGT-IFVTNHEVGEIVSITPDG--NQ----QIHATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSD 100 (302)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEECTTC--CE----EEEEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECTT
T ss_pred CcCCEEECCCCC-EEEEeCCCCEEEEEeCCC--CE----EEEEcCCCCcceEEEcCCCC-eEEEecCCceEEEEEecccc
Confidence 578999999998 889988899998888643 21 23445567899999999998 89988888888888876533
Q ss_pred CeeEEE--ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 311 SALTSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 311 ~~~~~~--~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
.....+ .......+.+.+.+++ .++++-+.++.+..+|....
T Consensus 101 ~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 101 GTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp SCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTT
T ss_pred cceeeccccCCccccceeEEccCC-CEEeeccccccceeeeccCC
Confidence 333333 2345668999999999 88888888888888887654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.79 E-value=0.0019 Score=56.10 Aligned_cols=159 Identities=11% Similarity=0.038 Sum_probs=96.9
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
..+..+.|.+++ ++.++-...++|+.|+... ......+........+|++++++. ++
T Consensus 40 ~~lEG~~~D~~G-~Ly~~D~~~g~I~ri~p~g---------------------~~~~~~~~~~~~~p~gla~~~dG~-l~ 96 (319)
T d2dg1a1 40 LQLEGLNFDRQG-QLFLLDVFEGNIFKINPET---------------------KEIKRPFVSHKANPAAIKIHKDGR-LF 96 (319)
T ss_dssp CCEEEEEECTTS-CEEEEETTTCEEEEECTTT---------------------CCEEEEEECSSSSEEEEEECTTSC-EE
T ss_pred cCcEeCEECCCC-CEEEEECCCCEEEEEECCC---------------------CeEEEEEeCCCCCeeEEEECCCCC-EE
Confidence 455789999998 6888877888888888765 222333334445678999999986 66
Q ss_pred EEEeC----CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC------CcEEEEECCCCCCeeEE
Q 018322 246 VTGDC----NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD------GHIAIWDTRVGKSALTS 315 (358)
Q Consensus 246 ~sgs~----dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D------g~I~iwD~r~~~~~~~~ 315 (358)
++... .+.|...+......... ... ..-...++++.+.++|. ++++.... +.+..++... ..+..
T Consensus 97 va~~~~~~~~~~i~~~~~~~~~~~~~-~~~-~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg--~~~~~ 171 (319)
T d2dg1a1 97 VCYLGDFKSTGGIFAATENGDNLQDI-IED-LSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF--RTVTP 171 (319)
T ss_dssp EEECTTSSSCCEEEEECTTSCSCEEE-ECS-SSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS--CCEEE
T ss_pred EEecCCCccceeEEEEcCCCceeeee-ccC-CCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccc--ceeEE
Confidence 65432 22344444433111110 000 11134578999999998 66664321 2344444433 23333
Q ss_pred EecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 316 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 316 ~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
+...-...|.|+|+|++..++++-+..+.|..||+..
T Consensus 172 ~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~ 208 (319)
T d2dg1a1 172 IIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 208 (319)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence 3333345688999999945667767788999998764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.77 E-value=0.00086 Score=58.25 Aligned_cols=122 Identities=7% Similarity=0.131 Sum_probs=84.3
Q ss_pred CeEEEEeCCCCCC----eEEEEeCCCcEEEEecCCCCCcccC--CCcccc-CCCcEEEEEECCCCCCEEEEEECCCcEEE
Q 018322 231 EGYAIDWNPITTG----RLVTGDCNSCIYLWEPASDATWNVD--PNPFIG-HSASVEDLQWSPTEPDVFASCSVDGHIAI 303 (358)
Q Consensus 231 ~v~~l~~s~~~~~----~l~sgs~dg~I~lwd~~~~~~~~~~--~~~~~~-h~~~V~~v~~sp~~~~~las~s~Dg~I~i 303 (358)
....|+|++++.+ ++++-+..+.|..|++...+..... ...+.+ +......+++..+++ ++++....+.|.+
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g~I~~ 251 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEV 251 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEE
T ss_pred eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEcCCCEEEE
Confidence 3467899887642 3445567788999988654331100 001111 223456789999998 8888888999999
Q ss_pred EECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 304 WDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 304 wD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
||...+ .....+......+++++|.|++..+++|.+.+|.|..+++....
T Consensus 252 ~dp~~g-~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 252 FGPDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp ECTTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EeCCCC-EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 998764 35555666667789999999885578888888999888876543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.76 E-value=0.00083 Score=56.45 Aligned_cols=156 Identities=8% Similarity=-0.018 Sum_probs=102.5
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
....+.|.+.+.+ +++++-.....+..++..... .......+ .....+|++.+.+. +
T Consensus 97 ~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~--------------------~~~~~~~~-~~~p~~i~~~~~g~-~ 153 (260)
T d1rwia_ 97 LNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKT--------------------QTVLPFTG-LNDPDGVAVDNSGN-V 153 (260)
T ss_dssp CCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSS--------------------CEECCCCS-CCSCCEEEECTTCC-E
T ss_pred eeecccccccccc-eeEeeccccccccccccccce--------------------eeeeeecc-cCCcceeeecCCCC-E
Confidence 3566888898887 576665666667777665411 11111111 23456899999887 7
Q ss_pred EEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE-ecCCCCe
Q 018322 245 LVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF-KAHNADV 323 (358)
Q Consensus 245 l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~-~~h~~~V 323 (358)
+++...++.|..++........ ...........|++.+++. ++++....+.|..++..... ...+ ...-...
T Consensus 154 ~v~~~~~~~i~~~d~~~~~~~~----~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~~~~~~~--~~~~~~~~~~~P 226 (260)
T d1rwia_ 154 YVTDTDNNRVVKLEAESNNQVV----LPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTT--STVLPFTGLNTP 226 (260)
T ss_dssp EEEEGGGTEEEEECTTTCCEEE----CCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEECTTCSC--CEECCCCSCCCE
T ss_pred eeeccccccccccccccceeee----eeccccCCCccceeeeeee-eeeeecCCCEEEEEeCCCCe--EEEEccCCCCCe
Confidence 7777778899999976533222 1112345568899999987 88888888889888765422 2222 2223456
Q ss_pred EEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 324 NVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 324 ~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
..|++.+++ .++++-..+++|+.++.+
T Consensus 227 ~~i~~d~~g-~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 227 LAVAVDSDR-TVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp EEEEECTTC-CEEEEEGGGTEEEEECCC
T ss_pred EEEEEeCCC-CEEEEECCCCEEEEEeCC
Confidence 899999998 788877777777776654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.72 E-value=0.00085 Score=56.41 Aligned_cols=155 Identities=6% Similarity=-0.022 Sum_probs=101.5
Q ss_pred ceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEE
Q 018322 167 CVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLV 246 (358)
Q Consensus 167 ~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 246 (358)
....|++.+++ .++++....+.|++++-.. ...+... ......+++++.+++. +++
T Consensus 58 ~p~gvav~~~g-~i~v~d~~~~~i~~~~~~~---------------------~~~~~~~-~~~~~p~~iavd~~g~-i~v 113 (260)
T d1rwia_ 58 QPQGLAVDGAG-TVYVTDFNNRVVTLAAGSN---------------------NQTVLPF-DGLNYPEGLAVDTQGA-VYV 113 (260)
T ss_dssp SCCCEEECTTC-CEEEEETTTEEEEECTTCS---------------------CCEECCC-CSCCSEEEEEECTTCC-EEE
T ss_pred CceEEEEcCCC-CEEEeeeeeceeeeeeecc---------------------ceeeeee-eeeeecccccccccce-eEe
Confidence 35677888888 6777776666666655433 1111111 1224678999999886 766
Q ss_pred EEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEE
Q 018322 247 TGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVI 326 (358)
Q Consensus 247 sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i 326 (358)
+-.....+..++........ .... -.....+|+++|++. ++++....+.|..+|..... ............+.|
T Consensus 114 ~d~~~~~~~~~~~~~~~~~~---~~~~-~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~-~~~~~~~~~~~p~gi 187 (260)
T d1rwia_ 114 ADRGNNRVVKLAAGSKTQTV---LPFT-GLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNN-QVVLPFTDITAPWGI 187 (260)
T ss_dssp EEGGGTEEEEECTTCSSCEE---CCCC-SCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCC-EEECCCSSCCSEEEE
T ss_pred eccccccccccccccceeee---eeec-ccCCcceeeecCCCC-Eeeeccccccccccccccce-eeeeeccccCCCccc
Confidence 66666677777765432222 1111 123457899999887 88888888999999987632 222122444567889
Q ss_pred EEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 327 SWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 327 ~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
++.+++ .++++....+.|..++...
T Consensus 188 ~~d~~g-~l~vsd~~~~~i~~~~~~~ 212 (260)
T d1rwia_ 188 AVDEAG-TVYVTEHNTNQVVKLLAGS 212 (260)
T ss_dssp EECTTC-CEEEEETTTTEEEEECTTC
T ss_pred eeeeee-eeeeeecCCCEEEEEeCCC
Confidence 999998 8888888888888887643
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.0013 Score=60.45 Aligned_cols=150 Identities=12% Similarity=0.143 Sum_probs=89.0
Q ss_pred EEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC---CCCeEEEEeCCCCCCeEEEE
Q 018322 172 RAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH---KDEGYAIDWNPITTGRLVTG 248 (358)
Q Consensus 172 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~~~l~sg 248 (358)
.|.+++ .++. -..+|.|.+||+... .....+..+ .-.+....|||++. +++.+
T Consensus 23 ~W~~~~-~~~~-~~~~g~i~~~~~~~~---------------------~~~~l~~~~~~~~~~~~~~~~SpD~~-~vl~~ 78 (465)
T d1xfda1 23 KWISDT-EFIY-REQKGTVRLWNVETN---------------------TSTVLIEGKKIESLRAIRYEISPDRE-YALFS 78 (465)
T ss_dssp CBSSSS-CBCC-CCSSSCEEEBCGGGC---------------------CCEEEECTTTTTTTTCSEEEECTTSS-EEEEE
T ss_pred EEeCCC-cEEE-EeCCCcEEEEECCCC---------------------CEEEEEcCccccccccceeEECCCCC-eEEEE
Confidence 577766 3443 356788999998762 222222221 22566788999998 66655
Q ss_pred e---------CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecC
Q 018322 249 D---------CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAH 319 (358)
Q Consensus 249 s---------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h 319 (358)
. ..+.+.++|+.++.... +.........+....|||+|. .+|... ++.|.+.+...+.....+..+.
T Consensus 79 ~~~~~~~r~s~~~~~~i~d~~~~~~~~--l~~~~~~~~~l~~~~wSPDG~-~iafv~-~~nl~~~~~~~~~~~~lt~~g~ 154 (465)
T d1xfda1 79 YNVEPIYQHSYTGYYVLSKIPHGDPQS--LDPPEVSNAKLQYAGWGPKGQ-QLIFIF-ENNIYYCAHVGKQAIRVVSTGK 154 (465)
T ss_dssp ESCCCCSSSCCCSEEEEEESSSCCCEE--CCCTTCCSCCCSBCCBCSSTT-CEEEEE-TTEEEEESSSSSCCEEEECCCB
T ss_pred EcccceeEeeccccEEEEEccCCceee--ccCccCCccccceeeeccCCc-eEEEEe-cceEEEEecCCCceEEEecccC
Confidence 3 35788999998744322 222223344566688999999 566554 5778888876643222222221
Q ss_pred CCC-----------------eEEEEEeCCCCcEEEEEe-CCCCEEEEeC
Q 018322 320 NAD-----------------VNVISWNRLASCLLASGS-DDGTFSIHDL 350 (358)
Q Consensus 320 ~~~-----------------V~~i~~~p~~~~~lasgs-~Dg~i~iwDl 350 (358)
... -..+-|+|+| ..||... ++..|..+.+
T Consensus 155 ~~~i~nG~~d~vyeee~~~~~~a~~WSPDg-k~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 155 EGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMEL 202 (465)
T ss_dssp TTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEE
T ss_pred cceeeccccchhhhhhhccccceEEECCCC-CeEEEEEecccccceeec
Confidence 111 1467799999 6666654 4455555544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.21 E-value=0.038 Score=47.34 Aligned_cols=164 Identities=9% Similarity=0.043 Sum_probs=96.3
Q ss_pred EEEecCCCceeEEEEcCCCCcEEEEEeCC--CcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCC---CCCeE
Q 018322 159 LRKVAHQGCVNRIRAMTQNPHICASWADT--GHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGH---KDEGY 233 (358)
Q Consensus 159 ~~~~~H~~~V~~i~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~ 233 (358)
.......+..+.+++.+++ .++++...+ ....++.+... ...+..+..+ .....
T Consensus 75 ~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~--------------------~~~~~~~~~~~~~~~~~n 133 (319)
T d2dg1a1 75 RPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATEN--------------------GDNLQDIIEDLSTAYCID 133 (319)
T ss_dssp EEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTT--------------------SCSCEEEECSSSSCCCEE
T ss_pred EEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCC--------------------CceeeeeccCCCcccCCc
Confidence 3344566778999999998 566654332 23333333321 1112222221 22467
Q ss_pred EEEeCCCCCCeEEEEeC------CCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECC
Q 018322 234 AIDWNPITTGRLVTGDC------NSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTR 307 (358)
Q Consensus 234 ~l~~s~~~~~~l~sgs~------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r 307 (358)
.+.+.++|. +.++... .+.+..++... ... ..+...-...+.|+|+|++..++++-+..+.|..||+.
T Consensus 134 d~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg--~~~---~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~ 207 (319)
T d2dg1a1 134 DMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF--RTV---TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALE 207 (319)
T ss_dssp EEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS--CCE---EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred ceeEEeccc-eeecccccccccCcceeEEEeccc--cee---EEEeeccceeeeeeeccccceEEEecccCCceEEEEEc
Confidence 889999886 5555322 12344444322 111 12222234567899999998667777888999999987
Q ss_pred CCCCeeEEE-------ecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeC
Q 018322 308 VGKSALTSF-------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 350 (358)
Q Consensus 308 ~~~~~~~~~-------~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDl 350 (358)
......... .........+++..+| ++.++....+.|.+||-
T Consensus 208 ~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G-~l~Va~~~~g~V~~~~p 256 (319)
T d2dg1a1 208 DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD-NLYVAMYGQGRVLVFNK 256 (319)
T ss_dssp TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC-CEEEEEETTTEEEEECT
T ss_pred CCCceeccccceeeeccCCccceeeeeEcCCC-CEEEEEcCCCEEEEECC
Confidence 533221111 1111235678999999 78888888899999985
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.0051 Score=56.30 Aligned_cols=118 Identities=16% Similarity=0.108 Sum_probs=64.3
Q ss_pred CceeEEEEcCCCCcEEEEE--------eCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEe
Q 018322 166 GCVNRIRAMTQNPHICASW--------ADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDW 237 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~--------s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 237 (358)
-.+....++|++..++... +..+.+.|+|+.... ..++.........+....|
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~-------------------~~~l~~~~~~~~~l~~~~w 121 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD-------------------PQSLDPPEVSNAKLQYAGW 121 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC-------------------CEECCCTTCCSCCCSBCCB
T ss_pred cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc-------------------eeeccCccCCccccceeee
Confidence 3566778999995444332 335678888887621 1111111122234556889
Q ss_pred CCCCCCeEEEEeCCCcEEEEecCCCCCcccCC-----CccccCC---------CcEEEEEECCCCCCEEEEEE-CCCcEE
Q 018322 238 NPITTGRLVTGDCNSCIYLWEPASDATWNVDP-----NPFIGHS---------ASVEDLQWSPTEPDVFASCS-VDGHIA 302 (358)
Q Consensus 238 s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~-----~~~~~h~---------~~V~~v~~sp~~~~~las~s-~Dg~I~ 302 (358)
||+|. .||-.. ++.|++.+...+....... ..+.|.. +.-..+.|||+|. .||... .+..|.
T Consensus 122 SPDG~-~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk-~iaf~~~D~s~V~ 198 (465)
T d1xfda1 122 GPKGQ-QLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVP 198 (465)
T ss_dssp CSSTT-CEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSC
T ss_pred ccCCc-eEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCC-eEEEEEecccccc
Confidence 99998 776655 6678888875533211100 0111111 1124678999999 565544 344444
Q ss_pred EEE
Q 018322 303 IWD 305 (358)
Q Consensus 303 iwD 305 (358)
.+.
T Consensus 199 ~~~ 201 (465)
T d1xfda1 199 IME 201 (465)
T ss_dssp EEE
T ss_pred eee
Confidence 443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.08 E-value=0.026 Score=48.34 Aligned_cols=158 Identities=10% Similarity=0.063 Sum_probs=91.2
Q ss_pred CceeEEEEcCCCCcEEEEEeC-------CCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc----CCCCCeEE
Q 018322 166 GCVNRIRAMTQNPHICASWAD-------TGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG----GHKDEGYA 234 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~-------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~ 234 (358)
.....+.|.+++ ++.++... +|+|..||..... ...... .....-..
T Consensus 18 ~g~EGpa~d~dG-~ly~~~~~~~~~~~~~g~I~r~d~~~~~---------------------~~~~~~~~~~~~~g~P~G 75 (314)
T d1pjxa_ 18 PGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGK---------------------KTVICKPEVNGYGGIPAG 75 (314)
T ss_dssp TTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCC---------------------EEEEECCEETTEECCEEE
T ss_pred CCCeEeEEeCCC-CEEEEECccccccccCCEEEEEECCCCc---------------------EEEEECCccccCCCccee
Confidence 346678899998 45554322 3568788776521 111111 11123568
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCC-CcEEEEEECCCCCCEEEEEEC---------------C
Q 018322 235 IDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHS-ASVEDLQWSPTEPDVFASCSV---------------D 298 (358)
Q Consensus 235 l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~-~~V~~v~~sp~~~~~las~s~---------------D 298 (358)
|.|.+++. +|++++....|...+.... ..........+.. ...+++.+.+++. +.++-.. .
T Consensus 76 l~~~~dg~-~l~vad~~~~i~~~~~~g~-~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~ 152 (314)
T d1pjxa_ 76 CQCDRDAN-QLFVADMRLGLLVVQTDGT-FEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp EEECSSSS-EEEEEETTTEEEEEETTSC-EEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSC
T ss_pred EEEeCCCC-EEEEEECCCeEEEEeCCCc-EEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCC
Confidence 99999987 8888887778888887542 2111111122221 2468899999997 6666432 2
Q ss_pred CcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCC----cEEEEEeCCCCEEEEeCC
Q 018322 299 GHIAIWDTRVGKSALTSFKAHNADVNVISWNRLAS----CLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 299 g~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~----~~lasgs~Dg~i~iwDlr 351 (358)
|.|..++.. .. ...+...-..-|.|+|+|++. .++++-+..+.|..||+.
T Consensus 153 G~v~~~~~d--g~-~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~ 206 (314)
T d1pjxa_ 153 GSIYCFTTD--GQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp EEEEEECTT--SC-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred ceEEEEeec--Cc-eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeecc
Confidence 234333332 12 222323333458899998763 255666677888888865
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.84 E-value=0.092 Score=44.29 Aligned_cols=108 Identities=10% Similarity=0.074 Sum_probs=73.8
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEecCCCCCcccCCC----ccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEEC
Q 018322 231 EGYAIDWNPITTGRLVTGDCNSCIYLWEPASDATWNVDPN----PFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDT 306 (358)
Q Consensus 231 ~v~~l~~s~~~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~----~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~ 306 (358)
....++|++++..++++-+..+.|..+++........... .+.+.......+++..++. +.++....+.|..||.
T Consensus 149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp 227 (295)
T d2ghsa1 149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDT 227 (295)
T ss_dssp SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECT
T ss_pred CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecC
Confidence 4568999999984556667788999998754322111001 1122345577889999997 8888888899999996
Q ss_pred CCCCCeeEEEecCCCCeEEEEEe-CCCCcEEEEEeC
Q 018322 307 RVGKSALTSFKAHNADVNVISWN-RLASCLLASGSD 341 (358)
Q Consensus 307 r~~~~~~~~~~~h~~~V~~i~~~-p~~~~~lasgs~ 341 (358)
.. ..+..+..-...+++++|- ++...+++|...
T Consensus 228 ~G--~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 228 DG--NHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp TC--CEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred CC--cEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence 53 4566665545568999995 666567777554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.80 E-value=0.039 Score=46.16 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=96.6
Q ss_pred eeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc------CCCCCeEEEEeCCCC
Q 018322 168 VNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG------GHKDEGYAIDWNPIT 241 (358)
Q Consensus 168 V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~s~~~ 241 (358)
-..|++.+++ .++++-.....|++||.... .+..+. +.......+++....
T Consensus 25 P~gvavd~dg-~i~VaD~~n~rI~v~d~~G~----------------------~~~~~~~~~~~~~~~~~p~~~~~~~~~ 81 (279)
T d1q7fa_ 25 PSGVAVNAQN-DIIVADTNNHRIQIFDKEGR----------------------FKFQFGECGKRDSQLLYPNRVAVVRNS 81 (279)
T ss_dssp EEEEEECTTC-CEEEEEGGGTEEEEECTTSC----------------------EEEEECCBSSSTTCBSSEEEEEEETTT
T ss_pred ccEEEEcCCC-CEEEEECCCCEEEEEeCCCC----------------------EEEEecccCCCcccccccccccccccc
Confidence 4788999988 67777777788999986542 111121 111133455555443
Q ss_pred CCeEEEE-eCCCcEEEEecCCCCCcccCCCcc-ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEE--e
Q 018322 242 TGRLVTG-DCNSCIYLWEPASDATWNVDPNPF-IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSF--K 317 (358)
Q Consensus 242 ~~~l~sg-s~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~--~ 317 (358)
...+++. +.++.|.+++.. +... ..+ .........+++.+++. ++++....+.+.+++... ..+..+ .
T Consensus 82 ~~~~~~~~~~~~~i~~~~~~--g~~~---~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g--~~~~~~g~~ 153 (279)
T d1q7fa_ 82 GDIIVTERSPTHQIQIYNQY--GQFV---RKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNG--NVLHKFGCS 153 (279)
T ss_dssp TEEEEEECGGGCEEEEECTT--SCEE---EEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTS--CEEEEEECT
T ss_pred cccceeccCCcccccccccc--ccce---eecCCCcccccceeccccCCc-EEEEeeccceeeEeccCC--ceeeccccc
Confidence 3234333 345567676653 2211 112 12345677899999987 777777777888887653 345554 3
Q ss_pred cCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 318 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 318 ~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
.+......+++.+++ .++++....+.|.+||..
T Consensus 154 ~~~~~~~~i~~d~~g-~i~v~d~~~~~V~~~d~~ 186 (279)
T d1q7fa_ 154 KHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYE 186 (279)
T ss_dssp TTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETT
T ss_pred ccccccceeeeccce-eEEeeeccccceeeeecC
Confidence 455678889999988 888888888899999864
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.52 E-value=0.097 Score=44.14 Aligned_cols=153 Identities=10% Similarity=-0.044 Sum_probs=91.8
Q ss_pred EEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeEEEEe
Q 018322 170 RIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRLVTGD 249 (358)
Q Consensus 170 ~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sgs 249 (358)
+..|.+....+..+=-..++|+-||.... ....+. ....+.++++.+++. + +.++
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g----------------------~~~~~~-~~~~~~~i~~~~dg~-l-~va~ 76 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASG----------------------RKTVHA-LPFMGSALAKISDSK-Q-LIAS 76 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTT----------------------EEEEEE-CSSCEEEEEEEETTE-E-EEEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCC----------------------eEEEEE-CCCCcEEEEEecCCC-E-EEEE
Confidence 45677655456555445678888887662 112221 234677899888764 4 4455
Q ss_pred CCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEEC----CCcEEEEECCCCCCeeEEEecCCCCeEE
Q 018322 250 CNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSV----DGHIAIWDTRVGKSALTSFKAHNADVNV 325 (358)
Q Consensus 250 ~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~----Dg~I~iwD~r~~~~~~~~~~~h~~~V~~ 325 (358)
.+ .|.++|..++................++++.+.|+|. +.++... .+.-.+|.+..+ .+..+...-...|.
T Consensus 77 ~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g--~~~~~~~~~~~~Ng 152 (295)
T d2ghsa1 77 DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKG--KVTKLFADISIPNS 152 (295)
T ss_dssp TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEETT--EEEEEEEEESSEEE
T ss_pred eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeeecCC--cEEEEeeccCCcce
Confidence 44 5889998764321110000111234689999999998 5554432 234456666543 22333223335689
Q ss_pred EEEeCCCCcEEEEEeCCCCEEEEeCC
Q 018322 326 ISWNRLASCLLASGSDDGTFSIHDLR 351 (358)
Q Consensus 326 i~~~p~~~~~lasgs~Dg~i~iwDlr 351 (358)
++|++++..++++-+..+.|..+++.
T Consensus 153 ~~~s~d~~~l~~~dt~~~~I~~~~~d 178 (295)
T d2ghsa1 153 ICFSPDGTTGYFVDTKVNRLMRVPLD 178 (295)
T ss_dssp EEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred eeecCCCceEEEeecccceeeEeeec
Confidence 99999996677777778889888864
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.06 E-value=0.27 Score=39.82 Aligned_cols=51 Identities=20% Similarity=0.115 Sum_probs=31.4
Q ss_pred cEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCCC
Q 018322 300 HIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKV 355 (358)
Q Consensus 300 ~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~~ 355 (358)
.|.++|+.... ...+..+. ......|+|+|..++.+ .++.|.++|+.+.+.
T Consensus 215 ~l~~~d~~g~~--~~~lt~~~-~~~~~~~SpDG~~I~f~--~~~~l~~~d~~~g~~ 265 (281)
T d1k32a2 215 QIYSTDLDGKD--LRKHTSFT-DYYPRHLNTDGRRILFS--KGGSIYIFNPDTEKI 265 (281)
T ss_dssp EEEEEETTSCS--CEECCCCC-SSCEEEEEESSSCEEEE--ETTEEEEECTTTCCE
T ss_pred ceEEEeCCCCc--eEEeecCC-CcccccCcCCCCEEEEE--eCCEEEEEECCCCCE
Confidence 46666776532 33333222 23445799999555543 357899999987764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.03 E-value=0.31 Score=40.18 Aligned_cols=163 Identities=7% Similarity=-0.084 Sum_probs=96.4
Q ss_pred CCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCC
Q 018322 164 HQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 164 H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 243 (358)
+...+..|.|.+.+..++.+-...+.|+..++.. ......+......+.+|++...+..
T Consensus 34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g---------------------~~~~~v~~~~~~~p~~iAvD~~~~~ 92 (263)
T d1npea_ 34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG---------------------GEPTTIIRQDLGSPEGIALDHLGRT 92 (263)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS---------------------CCCEEEECTTCCCEEEEEEETTTTE
T ss_pred CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEccc---------------------CCcEEEEEeccccccEEEEeccCCe
Confidence 3456788999987766766656678888888765 2222233333345667776655542
Q ss_pred eEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEE--ECCCCCCeeEEEecCCC
Q 018322 244 RLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW--DTRVGKSALTSFKAHNA 321 (358)
Q Consensus 244 ~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw--D~r~~~~~~~~~~~h~~ 321 (358)
+..+-...+.|.+.++....... .+.........++++|....++.+-...+..+|+ ++... .........-.
T Consensus 93 lY~~d~~~~~I~~~~~dg~~~~~----l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-~~~~i~~~~~~ 167 (263)
T d1npea_ 93 IFWTDSQLDRIEVAKMDGTQRRV----LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLG 167 (263)
T ss_dssp EEEEETTTTEEEEEETTSCSCEE----EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCS
T ss_pred EEEeccCCCEEEEEecCCceEEE----EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-Cceeeeeeccc
Confidence 44455567799999986532211 1122235688999999887555554433444455 44432 22222223334
Q ss_pred CeEEEEEeCCCCcEEEEEeCCCCEEEEeCCC
Q 018322 322 DVNVISWNRLASCLLASGSDDGTFSIHDLRL 352 (358)
Q Consensus 322 ~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~ 352 (358)
..+.|++.+.+..++.+-...+.|...|+..
T Consensus 168 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g 198 (263)
T d1npea_ 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred ccceEEEeecCcEEEEEeCCCCEEEEEECCC
Confidence 5688999887745555555567787777653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.67 E-value=0.045 Score=44.91 Aligned_cols=93 Identities=12% Similarity=0.149 Sum_probs=58.0
Q ss_pred EeCCC--CCCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEE-ECCC-----cEEEEECC
Q 018322 236 DWNPI--TTGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASC-SVDG-----HIAIWDTR 307 (358)
Q Consensus 236 ~~s~~--~~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~-s~Dg-----~I~iwD~r 307 (358)
..+|+ |. ++|-.+ +|.|.+.|+..+.. +.+..+...+...+|||+|+ .||.. ..++ .|.+++..
T Consensus 5 ~~sPdi~G~-~v~f~~-~~dl~~~d~~~g~~-----~~Lt~~~~~~~~p~~SPDG~-~iaf~~~~~~~~~~~~i~~~~~~ 76 (281)
T d1k32a2 5 LLNPDIHGD-RIIFVC-CDDLWEHDLKSGST-----RKIVSNLGVINNARFFPDGR-KIAIRVMRGSSLNTADLYFYNGE 76 (281)
T ss_dssp CEEEEEETT-EEEEEE-TTEEEEEETTTCCE-----EEEECSSSEEEEEEECTTSS-EEEEEEEESTTCCEEEEEEEETT
T ss_pred ccCCCCCCC-EEEEEe-CCcEEEEECCCCCE-----EEEecCCCcccCEEECCCCC-EEEEEEeeCCCCCceEEEEEEec
Confidence 35677 77 665544 56788888876332 34566777889999999999 55543 3333 36666666
Q ss_pred CCCCeeEEEecC-------CCCeEEEEEeCCCCcEEEEE
Q 018322 308 VGKSALTSFKAH-------NADVNVISWNRLASCLLASG 339 (358)
Q Consensus 308 ~~~~~~~~~~~h-------~~~V~~i~~~p~~~~~lasg 339 (358)
.+. ...+..+ ......+.|+|++ ..|+..
T Consensus 77 ~g~--~~~lt~~~~~~~~~~~~~~~~~~spdg-~~l~~~ 112 (281)
T d1k32a2 77 NGE--IKRITYFSGKSTGRRMFTDVAGFDPDG-NLIIST 112 (281)
T ss_dssp TTE--EEECCCCCEEEETTEECSEEEEECTTC-CEEEEE
T ss_pred CCc--eEEeeecCCCccCccccccccccCCCC-CEEEEE
Confidence 532 2333222 2245678999999 666554
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.13 E-value=0.16 Score=43.95 Aligned_cols=95 Identities=6% Similarity=0.012 Sum_probs=58.5
Q ss_pred EEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-CcEEEEECCCCCCeeEEEe--cCCCCeEEEEEeC
Q 018322 254 IYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD-GHIAIWDTRVGKSALTSFK--AHNADVNVISWNR 330 (358)
Q Consensus 254 I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D-g~I~iwD~r~~~~~~~~~~--~h~~~V~~i~~~p 330 (358)
+.+||+.+ +.|.........|.......++.+++. +++.|+.+ ..+.+||..+... .... .....-...+..+
T Consensus 54 ~~~yd~~t-~~w~~~~~~~~~~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~~~w--~~~~~~~~~r~~~~~~~~~ 129 (387)
T d1k3ia3 54 TSSWDPST-GIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSSDSW--IPGPDMQVARGYQSSATMS 129 (387)
T ss_dssp EEEECTTT-CCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGGTEE--EECCCCSSCCSSCEEEECT
T ss_pred EEEEECCC-CcEeecCCCCCCcccceeEEEEecCCc-EEEeecCCCcceeEecCccCcc--cccccccccccccceeeec
Confidence 77999987 555421111222333445667889998 88887655 5899999987321 1111 1111224566777
Q ss_pred CCCcEEEEEeCC------CCEEEEeCCCC
Q 018322 331 LASCLLASGSDD------GTFSIHDLRLL 353 (358)
Q Consensus 331 ~~~~~lasgs~D------g~i~iwDlr~~ 353 (358)
++ .+++.|+.+ ..+.+||..+.
T Consensus 130 dG-~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 130 DG-RVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp TS-CEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred CC-ceeeeccccccccccceeeeecCCCC
Confidence 88 788887642 36889998764
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.11 E-value=1.1 Score=38.10 Aligned_cols=113 Identities=9% Similarity=-0.056 Sum_probs=65.6
Q ss_pred CCCCCCeEEEEe---CCCcEEEEecCCCCCcccCCCcccc-CCCcEEEEEECCCCCCEEEEEEC---------------C
Q 018322 238 NPITTGRLVTGD---CNSCIYLWEPASDATWNVDPNPFIG-HSASVEDLQWSPTEPDVFASCSV---------------D 298 (358)
Q Consensus 238 s~~~~~~l~sgs---~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~las~s~---------------D 298 (358)
..++..+|++.. ...+|-+|++...+........+.. .....++|.+..++. +++|-.. -
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~ 185 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGL 185 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTC
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcC
Confidence 445554566653 3567888888654321111111211 234578999988887 7776311 0
Q ss_pred CcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 299 GHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 299 g~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
++..+|...... ...+...-...|.|+++|++..++++-...++|++|++...
T Consensus 186 ~~g~v~~~~~~~--~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 186 AWSFVTYYSPND--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp CCEEEEEECSSC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CceeEEEEcCCc--eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence 233444443321 22222233468999999999666677777889999998643
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.04 E-value=1.6 Score=37.43 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=73.4
Q ss_pred CeEEEEe--CCC-CCCeEEEEeCCCcEEEEecCCCCC--cc-cCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEE
Q 018322 231 EGYAIDW--NPI-TTGRLVTGDCNSCIYLWEPASDAT--WN-VDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIW 304 (358)
Q Consensus 231 ~v~~l~~--s~~-~~~~l~sgs~dg~I~lwd~~~~~~--~~-~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iw 304 (358)
.++++|+ ++. +.-++++...+|.+..|.+...+. .. ...+.+ .-...++.+.+..... .|..+-.+.-|..+
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~~q~EGCVvDde~~-~LyisEE~~Giw~~ 206 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KMNSQTEGMAADDEYG-SLYIAEEDEAIWKF 206 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-ECSSCEEEEEEETTTT-EEEEEETTTEEEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CCCCccceEEEeCCCC-cEEEecCccceEEE
Confidence 5677776 654 332566777889999988743221 11 111222 2346789999998877 67777777666666
Q ss_pred ECCCCC---Ce-eEEEe--cCCCCeEEEEEeC--CCC-cEEEEEeCCCCEEEEeCCCC
Q 018322 305 DTRVGK---SA-LTSFK--AHNADVNVISWNR--LAS-CLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 305 D~r~~~---~~-~~~~~--~h~~~V~~i~~~p--~~~-~~lasgs~Dg~i~iwDlr~~ 353 (358)
+..... .. +.... ....++-.|+.-. ++. .+|+|.-.++++.|||....
T Consensus 207 ~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 207 SAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp ESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 554211 12 21221 2356788887643 222 67777767889999998764
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=1.6 Score=35.51 Aligned_cols=170 Identities=10% Similarity=-0.064 Sum_probs=95.3
Q ss_pred ecCCCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC
Q 018322 162 VAHQGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT 241 (358)
Q Consensus 162 ~~H~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 241 (358)
+.....+..|.|.+....+..+=...+.|+-.++..... .......+......+.+|++.+.+
T Consensus 26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~-----------------~~~~~~~~~~~~~~p~glAvD~~~ 88 (266)
T d1ijqa1 26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------VSSYDTVISRDIQAPDGLAVDWIH 88 (266)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCCCEEEEETTT
T ss_pred eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCC-----------------CcceEEEEeCCCCCcceEEEeecc
Confidence 355667788999887755665545566676666643110 011112222222344455555545
Q ss_pred CCeEEEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEE-CCCcEEEEECCCCCCeeEEEecCC
Q 018322 242 TGRLVTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCS-VDGHIAIWDTRVGKSALTSFKAHN 320 (358)
Q Consensus 242 ~~~l~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s-~Dg~I~iwD~r~~~~~~~~~~~h~ 320 (358)
..+..+-...++|.+.++..... . ............++++|....++.+-. ..+.|.-.++... .....+...-
T Consensus 89 ~~lY~~d~~~~~I~v~~~~g~~~-~---~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~~l~~~~~ 163 (266)
T d1ijqa1 89 SNIYWTDSVLGTVSVADTKGVKR-K---TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENI 163 (266)
T ss_dssp TEEEEEETTTTEEEEEETTSSSE-E---EEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSC
T ss_pred ceEEEEecCCCEEEeEecCCceE-E---EEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC-ceeccccccc
Confidence 43455555677899999864321 1 123334456788999987664555542 3345655666532 2222223334
Q ss_pred CCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 321 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
...+.|++.+.+.++..+-...+.|...|+...
T Consensus 164 ~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~ 196 (266)
T d1ijqa1 164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (266)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ceeeEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence 567899999877456666566778888887543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.76 E-value=2 Score=34.89 Aligned_cols=160 Identities=11% Similarity=-0.051 Sum_probs=99.0
Q ss_pred CCceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCe
Q 018322 165 QGCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGR 244 (358)
Q Consensus 165 ~~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 244 (358)
...+..+++.+.+.++..+-...++|.+.++.. ......+........+|+..|... +
T Consensus 76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g---------------------~~~~~~~~~~~~~P~~l~vd~~~g-~ 133 (266)
T d1ijqa1 76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG---------------------VKRKTLFRENGSKPRAIVVDPVHG-F 133 (266)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTS---------------------SSEEEEEECTTCCEEEEEEETTTT-E
T ss_pred CCCcceEEEeeccceEEEEecCCCEEEeEecCC---------------------ceEEEEEcCCCCCcceEEEEcccC-e
Confidence 456778899877767777777788999999876 222233344445678888888654 5
Q ss_pred EEEEe--CCCcEEEEecCCCCCcccCCCccc-cCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEec--C
Q 018322 245 LVTGD--CNSCIYLWEPASDATWNVDPNPFI-GHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKA--H 319 (358)
Q Consensus 245 l~sgs--~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~--h 319 (358)
|.-.. ..+.|.-.++..... ..+. ..-...+.+++.+.+..++.+-...+.|...++.... ....+.. .
T Consensus 134 ly~~~~~~~~~I~r~~~dGs~~-----~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~-~~~~~~~~~~ 207 (266)
T d1ijqa1 134 MYWTDWGTPAKIKKGGLNGVDI-----YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKR 207 (266)
T ss_dssp EEEEECSSSCEEEEEETTSCCE-----EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTT
T ss_pred EEEeccCCCcceeEeccCCCce-----ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCC-EEEEEeCCCc
Confidence 54433 334565555543211 1121 2235578899998777466666677899999986532 2222222 2
Q ss_pred CCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 320 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 320 ~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
......|++.. + .++.+-..++.|...+..+++
T Consensus 208 ~~~p~~lav~~-~-~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 208 LAHPFSLAVFE-D-KVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp TSSEEEEEEET-T-EEEEEETTTTEEEEEETTTCC
T ss_pred ccccEEEEEEC-C-EEEEEECCCCeEEEEECCCCc
Confidence 23455677763 3 566666677888888877654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.52 E-value=2.9 Score=33.90 Aligned_cols=159 Identities=9% Similarity=-0.047 Sum_probs=94.3
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
+.+..|++...+.++..+-...+.|.+.++... .....+........+|+..|... +|
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~---------------------~~~~l~~~~l~~p~~l~vdp~~g-~l 136 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---------------------QRRVLFDTGLVNPRGIVTDPVRG-NL 136 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------SCEEEECSSCSSEEEEEEETTTT-EE
T ss_pred ccccEEEEeccCCeEEEeccCCCEEEEEecCCc---------------------eEEEEecccccCCcEEEEecccC-cE
Confidence 567889998766567777777788999988761 22222333335678899988775 55
Q ss_pred EEEe-CCCcEEEE--ecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCC
Q 018322 246 VTGD-CNSCIYLW--EPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNAD 322 (358)
Q Consensus 246 ~sgs-~dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~ 322 (358)
.-.. ..+..+|| ++....... .....-.....|++.+.+..++.+-...+.|...++.... ....+..- ..
T Consensus 137 y~t~~~~~~~~I~r~~~dG~~~~~----i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~-~~~v~~~~-~~ 210 (263)
T d1npea_ 137 YWTDWNRDNPKIETSHMDGTNRRI----LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG-RRKVLEGL-QY 210 (263)
T ss_dssp EEEECCSSSCEEEEEETTSCCCEE----EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE-EEEEEECC-CS
T ss_pred EEeecCCCCcEEEEecCCCCCcee----eeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC-eEEEECCC-CC
Confidence 5433 22233444 443222111 1111224567899988777455665667889999887532 22222322 23
Q ss_pred eEEEEEeCCCCcEEEEEeCCCCEEEEeCCCCC
Q 018322 323 VNVISWNRLASCLLASGSDDGTFSIHDLRLLK 354 (358)
Q Consensus 323 V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~~ 354 (358)
...|++. .+ .++.|-...+.|...|..+++
T Consensus 211 P~~lav~-~~-~lYwtd~~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 211 PFAVTSY-GK-NLYYTDWKTNSVIAMDLAISK 240 (263)
T ss_dssp EEEEEEE-TT-EEEEEETTTTEEEEEETTTTE
T ss_pred cEEEEEE-CC-EEEEEECCCCEEEEEECCCCc
Confidence 4567775 34 566666567788888887654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.37 E-value=5.1 Score=34.77 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=62.9
Q ss_pred eEEEEcCCCCcEEEEEeCCC----cEEEEeCCCCccccccccccccCCCCCCCCCCCcE-EEcCCCCCeEEEEeCCCCCC
Q 018322 169 NRIRAMTQNPHICASWADTG----HVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLV-KFGGHKDEGYAIDWNPITTG 243 (358)
Q Consensus 169 ~~i~~~p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~~ 243 (358)
..++++|++..++.+-+..| .|+++|+.+. +.+. .+.. .....+.|.+++.+
T Consensus 128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg---------------------~~~~~~i~~--~~~~~~~W~~D~~~ 184 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA---------------------KELPDVLER--VKFSCMAWTHDGKG 184 (430)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT---------------------EEEEEEEEE--ECSCCEEECTTSSE
T ss_pred cceEecCCCCEEEEEeccccCchheeEEeccCcc---------------------eeccccccc--ccccceEEcCCCCE
Confidence 34567899955555544444 6999999872 2211 1211 12246899999985
Q ss_pred eEEEEeC---------------CCcEEEEecCCCCCcccCCCcccc--CCCcEEEEEECCCCCCEEEEEEC--CCcEEEE
Q 018322 244 RLVTGDC---------------NSCIYLWEPASDATWNVDPNPFIG--HSASVEDLQWSPTEPDVFASCSV--DGHIAIW 304 (358)
Q Consensus 244 ~l~sgs~---------------dg~I~lwd~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~las~s~--Dg~I~iw 304 (358)
++.+.-. -..|.+|.+.+....- ...+.. ....+..+..+.++..++++.+. ++...+|
T Consensus 185 ~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d--~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~ 262 (430)
T d1qfma1 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED--ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW 262 (430)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC--EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred EEEEEeccccCcccccccccCCcceEEEEECCCCcccc--ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEE
Confidence 5555421 1257777775532211 111222 23456678889999866655543 3344444
Q ss_pred --ECC
Q 018322 305 --DTR 307 (358)
Q Consensus 305 --D~r 307 (358)
|+.
T Consensus 263 ~~d~~ 267 (430)
T d1qfma1 263 YCDLQ 267 (430)
T ss_dssp EEEGG
T ss_pred EeeCC
Confidence 544
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=89.74 E-value=1.8 Score=37.96 Aligned_cols=151 Identities=7% Similarity=-0.038 Sum_probs=84.6
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEc-CCCCCeEEEEeCCCCC-CeEEEEeCCC-
Q 018322 176 QNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFG-GHKDEGYAIDWNPITT-GRLVTGDCNS- 252 (358)
Q Consensus 176 ~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~-~~l~sgs~dg- 252 (358)
+|..+++.-..+++|.+-|+... +...... .....+..+...+..+ .+++.++...
T Consensus 98 DGrylFVNDkan~RVAvIdl~~f---------------------kt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~v 156 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVM---------------------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDET 156 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTT---------------------EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred ceeEEEEEcCCCceEEEEECcce---------------------eeeEEEecCCCCCCceeecccCCCeEEEEccCcccc
Confidence 55567777778889999998872 2222221 2233556666554322 2666655432
Q ss_pred -----------------cEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC-----------------
Q 018322 253 -----------------CIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD----------------- 298 (358)
Q Consensus 253 -----------------~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D----------------- 298 (358)
.+..+|..+... . .... -......+.++|+|...|+++...
T Consensus 157 P~pndg~~l~d~~~y~~~~t~ID~~tm~V-~---~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i 231 (459)
T d1fwxa2 157 PLVNDGTNMEDVANYVNVFTAVDADKWEV-A---WQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI 231 (459)
T ss_dssp ESSCSSSSTTCGG-EEEEEEEEETTTTEE-E---EEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred ccCCCCccccchhhcceEEEEEecCCceE-E---EEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEE
Confidence 244556544211 0 0010 123455788999999666666432
Q ss_pred --------------------CcEEEEECCCC-CCeeE-EEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEEEeCCCC
Q 018322 299 --------------------GHIAIWDTRVG-KSALT-SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 353 (358)
Q Consensus 299 --------------------g~I~iwD~r~~-~~~~~-~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~iwDlr~~ 353 (358)
+.+.+-|.+.. ...+. .+.. ......+..+|+|..++++|..+.++.|+|++++
T Consensus 232 ~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki 307 (459)
T d1fwxa2 232 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 307 (459)
T ss_dssp EEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred EEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhh
Confidence 23455565541 11222 2221 1224567899999666677778999999999764
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.35 E-value=5.1 Score=33.27 Aligned_cols=222 Identities=11% Similarity=0.111 Sum_probs=125.9
Q ss_pred CCCCceee-eChhHHHhhhcccccCcceeEEEEeccCCCccccCCceEEEEEeecCCCCCCceEEEEEeeccCCccccCC
Q 018322 44 LEEGEELQ-CDPTAYNSLHAFHIGWPCLSFDIVRDTLGLVRNEFPHTAYFVAGTQAEKPSWNSIGVFKVSNISGKRRELV 122 (358)
Q Consensus 44 ~~~~~~l~-~~~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~v~GT~~~~~~~n~i~i~~~~~l~~~~~~~~ 122 (358)
|+.+..|+ ||-.+...|.++.+.=|..--.|+.+. +.-||++| .++-|.+..-
T Consensus 79 Lrag~~LQiFnletK~klks~~~~e~VvfWkWis~~----------~L~lVT~t--------aVYHW~~~g~-------- 132 (327)
T d1utca2 79 LKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN----------TVALVTDN--------AVYHWSMEGE-------- 132 (327)
T ss_dssp EEETTEEEEEETTTTEEEEEEECSSCCCEEEESSSS----------EEEEECSS--------EEEEEESSSS--------
T ss_pred EecCCeEEEEehhHhhhhceEEcCCCcEEEEecCCC----------EEEEEcCC--------ceEEEcccCC--------
Confidence 44455554 566778889999999999888898764 35666655 6777766210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCeEEEEEecC--CCceeEEEEcCCCCcEEEEEe--C----CCcEEEEe
Q 018322 123 PNKPSNDDEDVDSESSDSDEDSDDDEEGGSGTPILQLRKVAH--QGCVNRIRAMTQNPHICASWA--D----TGHVQVWD 194 (358)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H--~~~V~~i~~~p~~~~~lat~s--~----dg~V~iwd 194 (358)
..|...+...+- ...|-.-+.+++...++++|= . .|.+.||.
T Consensus 133 ------------------------------s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS 182 (327)
T d1utca2 133 ------------------------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS 182 (327)
T ss_dssp ------------------------------CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred ------------------------------CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEE
Confidence 133333222111 233444455555533333321 1 26788999
Q ss_pred CCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCC--CCeEEEE---eCCCcEEEEecCCCCC--ccc
Q 018322 195 LRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPIT--TGRLVTG---DCNSCIYLWEPASDAT--WNV 267 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~--~~~l~sg---s~dg~I~lwd~~~~~~--~~~ 267 (358)
... +.-+.+.||......+...-.. ..+|+-+ ...+.+++-++..... ...
T Consensus 183 ~er----------------------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f 240 (327)
T d1utca2 183 VDR----------------------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 240 (327)
T ss_dssp TTT----------------------TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC
T ss_pred ecc----------------------CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC
Confidence 876 2334455665433333222111 1122222 2236889998865321 110
Q ss_pred CCCc----c--ccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCCeeEEEecCCCCeEEEEEeCCCCcEEEEEeC
Q 018322 268 DPNP----F--IGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKSALTSFKAHNADVNVISWNRLASCLLASGSD 341 (358)
Q Consensus 268 ~~~~----~--~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~ 341 (358)
..+. + ..-.+---+++.++... ++...+.-|.|++||+.++ .++..-+-....|-..+-+... .-++.-..
T Consensus 241 ~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTg-t~i~~nRIs~~~iF~~a~~~~~-~Gi~~VNr 317 (327)
T d1utca2 241 PKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETG-TCIYMNRISGETIFVTAPHEAT-AGIIGVNR 317 (327)
T ss_dssp CCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEETTT-TEEEEEET
T ss_pred cceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccc-cEEEEeecCCCceEEeccCCCC-ceEEEECC
Confidence 0000 1 11234456788888887 9999999999999999995 5776666666777655555554 34444456
Q ss_pred CCCEE
Q 018322 342 DGTFS 346 (358)
Q Consensus 342 Dg~i~ 346 (358)
+|.|.
T Consensus 318 ~GqVl 322 (327)
T d1utca2 318 KGQVL 322 (327)
T ss_dssp TSEEE
T ss_pred CCeEE
Confidence 77664
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=87.80 E-value=5.1 Score=33.57 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=48.5
Q ss_pred CCCCeEEEEeCCCCCCeEEEEeCC-CcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECC------Cc
Q 018322 228 HKDEGYAIDWNPITTGRLVTGDCN-SCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVD------GH 300 (358)
Q Consensus 228 h~~~v~~l~~s~~~~~~l~sgs~d-g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~D------g~ 300 (358)
|.....+..+.+++. +++.|+.+ ..+.+||..+ ..|.... ... ....-...+..+++. +++.|+.. ..
T Consensus 74 ~~~~~~~~~~~~~g~-i~v~Gg~~~~~~~~yd~~~-~~w~~~~-~~~-~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~ 148 (387)
T d1k3ia3 74 HDMFCPGISMDGNGQ-IVVTGGNDAKKTSLYDSSS-DSWIPGP-DMQ-VARGYQSSATMSDGR-VFTIGGSWSGGVFEKN 148 (387)
T ss_dssp CCCSSCEEEECTTSC-EEEECSSSTTCEEEEEGGG-TEEEECC-CCS-SCCSSCEEEECTTSC-EEEECCCCCSSSCCCC
T ss_pred cccceeEEEEecCCc-EEEeecCCCcceeEecCcc-Ccccccc-ccc-ccccccceeeecCCc-eeeeccccccccccce
Confidence 333344667888887 77877654 5899999977 4554211 111 112223456677888 88887753 36
Q ss_pred EEEEECCCC
Q 018322 301 IAIWDTRVG 309 (358)
Q Consensus 301 I~iwD~r~~ 309 (358)
+.+||+.+.
T Consensus 149 v~~yd~~~~ 157 (387)
T d1k3ia3 149 GEVYSPSSK 157 (387)
T ss_dssp EEEEETTTT
T ss_pred eeeecCCCC
Confidence 899998763
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=86.72 E-value=9.4 Score=33.29 Aligned_cols=73 Identities=8% Similarity=0.034 Sum_probs=51.8
Q ss_pred cEEEEEECCCCCCEEEEEECCCcEEEEECCCC----------CCeeEEEecCCCCeEEEEEeCCCCcEEEEEeCCCCEEE
Q 018322 278 SVEDLQWSPTEPDVFASCSVDGHIAIWDTRVG----------KSALTSFKAHNADVNVISWNRLASCLLASGSDDGTFSI 347 (358)
Q Consensus 278 ~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~----------~~~~~~~~~h~~~V~~i~~~p~~~~~lasgs~Dg~i~i 347 (358)
....+..+|+|.++++++..+.++.++|++.- ...+.......-.-...+|...| +...|---|.+|.-
T Consensus 276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g-~aytslfids~v~k 354 (459)
T d1fwxa2 276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVK 354 (459)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCc-eEEEEeeccceEEE
Confidence 34568999999988888888999999999741 11121112223344556898888 66777778999999
Q ss_pred EeCC
Q 018322 348 HDLR 351 (358)
Q Consensus 348 wDlr 351 (358)
|++.
T Consensus 355 w~~~ 358 (459)
T d1fwxa2 355 WNIE 358 (459)
T ss_dssp EEHH
T ss_pred Eecc
Confidence 9974
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.95 E-value=11 Score=32.30 Aligned_cols=148 Identities=8% Similarity=0.055 Sum_probs=85.7
Q ss_pred CceeEEEEcCCCCcEEEEEeCCCcEEEEeCCCCccccccccccccCCCCCCCCCCCcEEEcCCCCCeEEEEeCCCCCCeE
Q 018322 166 GCVNRIRAMTQNPHICASWADTGHVQVWDLRSHLNALAESETIVGQGAPQVSNQSPLVKFGGHKDEGYAIDWNPITTGRL 245 (358)
Q Consensus 166 ~~V~~i~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 245 (358)
...+-+++++.. .+++.|+.++ +.|..+............ .....+...+ ..|..++|+.+ .|
T Consensus 37 ~~~~LLAVsn~~-GLl~aa~~~~-l~V~~t~~l~~~~~~~~~--------~~~~~~~~~i----p~v~~vafs~d---~l 99 (381)
T d1xipa_ 37 ASLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDST--------PLTFKWEKEI----PDVIFVCFHGD---QV 99 (381)
T ss_dssp SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSC--------CCCCSEEEEC----TTEEEEEEETT---EE
T ss_pred cccceEEEeCCC-CEEEEECCCE-EEEEEHHHHHHHhhccCC--------CCcceeccCC----CCeEEEEeeCC---EE
Confidence 456677887766 4777777775 667665432111111000 0011222222 36888999743 45
Q ss_pred EEEeCCCcEEEEecCCCCCcccCCCccccCCCcEEEEEECCCCCCEEEEEECCCcEEEEECCCCCC-ee----EEEecCC
Q 018322 246 VTGDCNSCIYLWEPASDATWNVDPNPFIGHSASVEDLQWSPTEPDVFASCSVDGHIAIWDTRVGKS-AL----TSFKAHN 320 (358)
Q Consensus 246 ~sgs~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~las~s~Dg~I~iwD~r~~~~-~~----~~~~~h~ 320 (358)
+... ++.+..++....... .....-...+.++.++|. .++.+..++.+.++++..+.. .+ ..+.. .
T Consensus 100 ~v~~-~~~l~~~~~~~l~~~----~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~-~ 170 (381)
T d1xipa_ 100 LVST-RNALYSLDLEELSEF----RTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDV-T 170 (381)
T ss_dssp EEEE-SSEEEEEESSSTTCE----EEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEE-C
T ss_pred EEEe-CCCEEEEEeeccccc----cccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEe-c
Confidence 5544 567788877552221 111223456888888874 577788899999999987542 11 11222 3
Q ss_pred CCeEEEEEeCCCCcEEEEEe
Q 018322 321 ADVNVISWNRLASCLLASGS 340 (358)
Q Consensus 321 ~~V~~i~~~p~~~~~lasgs 340 (358)
..+.+++|++.+ ..++++.
T Consensus 171 ~~~~~v~ws~kg-kq~v~~~ 189 (381)
T d1xipa_ 171 NSQLAVLLKDRS-FQSFAWR 189 (381)
T ss_dssp SSEEEEEETTSC-EEEEEEE
T ss_pred CCceEEEEeCCc-EEEEEeC
Confidence 568889999888 7777764
|