Citrus Sinensis ID: 018330
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SCL7 | 347 | Acetylglutamate kinase, c | yes | no | 0.860 | 0.887 | 0.75 | 1e-121 | |
| B0JHB1 | 295 | Acetylglutamate kinase OS | yes | no | 0.770 | 0.935 | 0.660 | 1e-104 | |
| B2IX33 | 298 | Acetylglutamate kinase OS | yes | no | 0.790 | 0.949 | 0.635 | 1e-102 | |
| Q8YXG8 | 297 | Acetylglutamate kinase OS | yes | no | 0.776 | 0.936 | 0.638 | 1e-101 | |
| B0CAM3 | 284 | Acetylglutamate kinase OS | yes | no | 0.782 | 0.985 | 0.644 | 1e-101 | |
| Q5MZ48 | 301 | Acetylglutamate kinase OS | yes | no | 0.776 | 0.923 | 0.656 | 1e-101 | |
| Q6V1L5 | 301 | Acetylglutamate kinase OS | yes | no | 0.776 | 0.923 | 0.656 | 1e-101 | |
| Q3MFQ8 | 297 | Acetylglutamate kinase OS | yes | no | 0.776 | 0.936 | 0.638 | 1e-101 | |
| Q116Q9 | 292 | Acetylglutamate kinase OS | yes | no | 0.796 | 0.976 | 0.624 | 1e-101 | |
| P59303 | 295 | Acetylglutamate kinase OS | yes | no | 0.776 | 0.942 | 0.641 | 1e-100 |
| >sp|Q9SCL7|NAGK_ARATH Acetylglutamate kinase, chloroplastic OS=Arabidopsis thaliana GN=NAGK PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/312 (75%), Positives = 266/312 (85%), Gaps = 4/312 (1%)
Query: 47 SNHRTEITKSSRSLTSAATAVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMK 106
++HR + + T + A + +P ++RV+ILSESLPFIQKFRGKTIVVKYGGAAM
Sbjct: 40 NHHRLGFSIKATVSTPPSIATGNAPSP-DYRVEILSESLPFIQKFRGKTIVVKYGGAAMT 98
Query: 107 PNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM 166
+ L +SVV DLVLL+ VGLRP+LVHGGGP+IN +LK+ I FRDGLRVTDA TM
Sbjct: 99 SPE---LKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTM 155
Query: 167 EIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPT 226
EIVSMVLVG+VNK+LVSLIN AGATAVGLSG DGRL TARP PNS +LGFVGEVARVDP+
Sbjct: 156 EIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPS 215
Query: 227 VIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE 286
V+ PLV+ G+IPVIASVAAD+ GQ+YNINADTVAGELAAALGAEKLILLTDVAGILEN+E
Sbjct: 216 VLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKE 275
Query: 287 DPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEI 346
DP SL+KEIDIKGVKKMIEDGKV GGMIPKV CCIRSLAQGV+TASIIDGR +HSLL EI
Sbjct: 276 DPSSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEI 335
Query: 347 LTDAGAGTMITG 358
++D GAGTMITG
Sbjct: 336 MSDEGAGTMITG 347
|
Involved in the arginine biosynthetic pathway via the intermediate compound ornithine. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 2EC: .EC: 8 |
| >sp|B0JHB1|ARGB_MICAN Acetylglutamate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=argB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 378 bits (971), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/280 (66%), Positives = 232/280 (82%), Gaps = 4/280 (1%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHG 136
RV ILSE+LP+IQ+FRG+T+VVKYGGAAM N D + +V++D+V LS VG+RPV+VHG
Sbjct: 12 RVKILSEALPYIQEFRGRTVVVKYGGAAM--NNSD-IKDTVMRDIVFLSCVGVRPVIVHG 68
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GGPEIN WL + GIEP F+DGLRVTDA+TM++V MVLVGRVNK +V+LIN+AG AVGL
Sbjct: 69 GGPEINSWLDKLGIEPQFKDGLRVTDADTMDVVEMVLVGRVNKEIVALINQAGGKAVGLC 128
Query: 197 GMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G DG L TARP + +GFVGEV+ VD +V+E LVNSG+IPVI+SVAADE GQ++NINA
Sbjct: 129 GKDGNLITARPV-GKEGIGFVGEVSSVDTSVVESLVNSGYIPVISSVAADETGQAHNINA 187
Query: 257 DTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
DTVAGE+AAALGA KLIL+TD AGIL+N +DP +L+ ++DI+ +++I+ G V GGMIPK
Sbjct: 188 DTVAGEIAAALGAAKLILMTDTAGILQNYKDPSTLLAKLDIQQARELIQKGIVAGGMIPK 247
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
V CC+RSLAQGV+ A IIDGR+ H+LLLEI TD G G+MI
Sbjct: 248 VGCCVRSLAQGVQAAHIIDGRLPHALLLEIFTDRGIGSMI 287
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Microcystis aeruginosa (strain NIES-843) (taxid: 449447) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 8 |
| >sp|B2IX33|ARGB_NOSP7 Acetylglutamate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=argB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 372 bits (955), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/288 (63%), Positives = 233/288 (80%), Gaps = 5/288 (1%)
Query: 71 QTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLR 130
QT A RV +LSE+LP+IQ+F G+T+VVKYGGAAMK + L V++D+V LS VGLR
Sbjct: 11 QTEAT-RVRVLSEALPYIQQFAGRTVVVKYGGAAMKDS---TLKDKVIRDIVFLSCVGLR 66
Query: 131 PVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGA 190
P++VHGGGPEIN WL + GIEP F++GLRVTDA TM++V MVLVGRVNK +V+LIN+AG
Sbjct: 67 PIVVHGGGPEINSWLDKLGIEPQFKNGLRVTDAATMDVVEMVLVGRVNKEIVALINQAGG 126
Query: 191 TAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQ 250
AVGL G DG LFTARP + +GFVGEV+ V+ +++ L ++G+IPV++SVAADE GQ
Sbjct: 127 LAVGLCGKDGNLFTARPQ-GQEGIGFVGEVSNVNIKILDTLASNGYIPVVSSVAADETGQ 185
Query: 251 SYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVG 310
+YNINADTVAGE+AAALGAEKLILLTD +GIL++ +D +L+ ++DI+ +++I +G V
Sbjct: 186 AYNINADTVAGEIAAALGAEKLILLTDTSGILKDYKDQSTLIPKVDIREARELIVNGIVT 245
Query: 311 GGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
GGMIPKVNCC+RSLAQGVR A IIDGR+ H+LLLEI TD G GTMI G
Sbjct: 246 GGMIPKVNCCVRSLAQGVRAAHIIDGRIPHALLLEIFTDVGIGTMILG 293
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Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 8 |
| >sp|Q8YXG8|ARGB_NOSS1 Acetylglutamate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=argB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/282 (63%), Positives = 227/282 (80%), Gaps = 4/282 (1%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHG 136
RV +LSE+LP+IQ+F G+T+VVKYGGAAMK + +L V++D+V LS VGLRP+LVHG
Sbjct: 16 RVQVLSEALPYIQQFAGRTVVVKYGGAAMKDS---HLKDQVIRDIVFLSCVGLRPILVHG 72
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GGPEIN WL + GIE F++GLRVTDA TM++V MVLVGRVNK +VSLIN+AG AVGL
Sbjct: 73 GGPEINSWLDKLGIEAQFKNGLRVTDAPTMDVVEMVLVGRVNKEIVSLINQAGGLAVGLC 132
Query: 197 GMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G DG L TARP + +GFVGEV+ V+ ++E L ++G+IPV++SVAAD+ GQ+YNINA
Sbjct: 133 GKDGNLITARPQ-GQEGIGFVGEVSNVNIKILETLASNGYIPVVSSVAADDSGQAYNINA 191
Query: 257 DTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
DTVAGE+AAALGAEKLILLTD GIL++ +DP +L+ ++DI+ +++I G V GGMIPK
Sbjct: 192 DTVAGEIAAALGAEKLILLTDTRGILKDYQDPGTLIPKVDIREARELINSGVVSGGMIPK 251
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
V CC+RSLAQGVR A IIDGR+ H+LLLEI TD G GTMI G
Sbjct: 252 VTCCVRSLAQGVRAAHIIDGRIPHALLLEIFTDVGIGTMILG 293
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 8 |
| >sp|B0CAM3|ARGB_ACAM1 Acetylglutamate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=argB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/284 (64%), Positives = 225/284 (79%), Gaps = 4/284 (1%)
Query: 74 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVL 133
A RV +LSE+LP+IQ F G+T+VVKYGGAAMK + L A+V++D+V ++ VGLRPVL
Sbjct: 4 ASDRVQVLSEALPYIQSFAGRTVVVKYGGAAMKDS---TLKATVIRDVVFMACVGLRPVL 60
Query: 134 VHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAV 193
VHGGGPEIN WL++ GIEP F GLRVTDA TM++V MVLVGRVNK LVSLIN+AG +AV
Sbjct: 61 VHGGGPEINLWLEKLGIEPQFMKGLRVTDAPTMDVVEMVLVGRVNKELVSLINQAGGSAV 120
Query: 194 GLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYN 253
G+ G DG+L TARP S +GFVGEVA V+P +I L++ GHIP+++SVA DE GQ YN
Sbjct: 121 GVCGKDGKLLTARPQGES-GIGFVGEVASVNPQLIHNLLDGGHIPIVSSVATDEEGQVYN 179
Query: 254 INADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGM 313
INADTVAGELAAAL AEKLILLTD GIL++ +D SL+ ++DI+ +++I V GGM
Sbjct: 180 INADTVAGELAAALDAEKLILLTDTPGILQDYKDATSLIHKLDIRQARELIAAEVVAGGM 239
Query: 314 IPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357
IPKV CCIRSLAQG++ A IIDGR H+LLLEI TD+G GTMIT
Sbjct: 240 IPKVTCCIRSLAQGIQAAHIIDGRAPHALLLEIFTDSGIGTMIT 283
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Acaryochloris marina (strain MBIC 11017) (taxid: 329726) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 8 |
| >sp|Q5MZ48|ARGB_SYNP6 Acetylglutamate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=argB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/282 (65%), Positives = 224/282 (79%), Gaps = 4/282 (1%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHG 136
RV ILSE+LP++Q+F G+T+VVKYGGAAMK ++ L +V++D+V L+ VG+RPV+VHG
Sbjct: 13 RVRILSEALPYLQQFAGRTVVVKYGGAAMK---QEELKEAVMRDIVFLACVGMRPVVVHG 69
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GGPEIN WL R GIEP F +GLRVTDA+TME+V MVLVGRVNK +VS IN G AVG
Sbjct: 70 GGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFC 129
Query: 197 GMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G DGRL ARP + + +GFVGEV V+ VIEPL+ G+IPVI+SVAADE GQS+NINA
Sbjct: 130 GTDGRLVLARPH-DQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINA 188
Query: 257 DTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
DTVAGE+AAAL AEKLILLTD GILE+ + P SL+ ++I +++I G VGGGMIPK
Sbjct: 189 DTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPK 248
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
V+CCIRSLAQGVR A IIDGR+ H+LLLEI TDAG GTMI G
Sbjct: 249 VDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVG 290
|
Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 8 |
| >sp|Q6V1L5|ARGB_SYNE7 Acetylglutamate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=argB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/282 (65%), Positives = 224/282 (79%), Gaps = 4/282 (1%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHG 136
RV ILSE+LP++Q+F G+T+VVKYGGAAMK ++ L +V++D+V L+ VG+RPV+VHG
Sbjct: 13 RVRILSEALPYLQQFAGRTVVVKYGGAAMK---QEELKEAVMRDIVFLACVGMRPVVVHG 69
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GGPEIN WL R GIEP F +GLRVTDA+TME+V MVLVGRVNK +VS IN G AVG
Sbjct: 70 GGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFC 129
Query: 197 GMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G DGRL ARP + + +GFVGEV V+ VIEPL+ G+IPVI+SVAADE GQS+NINA
Sbjct: 130 GTDGRLVLARPH-DQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINA 188
Query: 257 DTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
DTVAGE+AAAL AEKLILLTD GILE+ + P SL+ ++I +++I G VGGGMIPK
Sbjct: 189 DTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPK 248
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
V+CCIRSLAQGVR A IIDGR+ H+LLLEI TDAG GTMI G
Sbjct: 249 VDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVG 290
|
Synechococcus elongatus (strain PCC 7942) (taxid: 1140) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 8 |
| >sp|Q3MFQ8|ARGB_ANAVT Acetylglutamate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=argB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/282 (63%), Positives = 227/282 (80%), Gaps = 4/282 (1%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHG 136
RV +LSE+LP+IQ+F G+T+VVKYGGAAMK + +L V++D+V LS VGLRP+LVHG
Sbjct: 16 RVQVLSEALPYIQQFAGRTVVVKYGGAAMKDS---HLKDQVIRDIVFLSCVGLRPILVHG 72
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GGPEIN WL + GIE F++GLRVTDA TM++V MVLVGRVNK +VSLIN+AG AVGL
Sbjct: 73 GGPEINSWLDKLGIEAQFKNGLRVTDAPTMDVVEMVLVGRVNKEIVSLINQAGGLAVGLC 132
Query: 197 GMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G DG L TARP + +GFVGEV+ V+ ++E L ++G+IPV++SVAAD+ GQ+YNINA
Sbjct: 133 GKDGNLITARPQ-GQEGIGFVGEVSNVNIKILETLASNGYIPVVSSVAADDSGQAYNINA 191
Query: 257 DTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
DTVAGE+AAALGAEKLILLTD GIL++ +DP +L+ ++DI+ +++I G V GGMIPK
Sbjct: 192 DTVAGEIAAALGAEKLILLTDTRGILKDYKDPGTLIPKVDIREARELINGGVVSGGMIPK 251
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
V CC+RSLAQGVR A IIDGR+ H+LLLEI TD G GTMI G
Sbjct: 252 VTCCVRSLAQGVRAAHIIDGRIPHALLLEIFTDVGIGTMILG 293
|
Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 8 |
| >sp|Q116Q9|ARGB_TRIEI Acetylglutamate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=argB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/290 (62%), Positives = 230/290 (79%), Gaps = 5/290 (1%)
Query: 68 TDTQTPAEF-RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSV 126
TD + +E RV +LSE+LP+IQKF G+ IVVKYGGAAM+ + N+ V++D+VLLS
Sbjct: 5 TDLKNESEMSRVKVLSEALPYIQKFTGRKIVVKYGGAAMRDS---NVKDQVMRDIVLLSC 61
Query: 127 VGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLIN 186
VG+RP++VHGGGPEIN WL + GIEP F+DGLRVTDA+TME+V MVLVG+VNK +VSLIN
Sbjct: 62 VGIRPIVVHGGGPEINSWLGKLGIEPQFKDGLRVTDASTMEVVEMVLVGKVNKEIVSLIN 121
Query: 187 KAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAAD 246
+AG AVGL G D L ARP + +GFVGEV+ V +++ LV++G+IPV++SVA D
Sbjct: 122 QAGGCAVGLCGKDASLIQARPE-GIEGIGFVGEVSNVKIDILQSLVDNGYIPVVSSVATD 180
Query: 247 EFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIED 306
E GQ+YN+NADTVAGE+AAA+ AEKLILLTD AGILE+ +P SL+ ++DI+ +++IE
Sbjct: 181 EQGQAYNLNADTVAGEIAAAMEAEKLILLTDTAGILEDYHNPDSLIVKLDIQEARELIEK 240
Query: 307 GKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
G V GGMIPKVNCC+RSLAQGVR A I+DGRV H LL EILTD G G+MI
Sbjct: 241 GIVSGGMIPKVNCCVRSLAQGVRAAHILDGRVPHVLLQEILTDTGVGSMI 290
|
Trichodesmium erythraeum (strain IMS101) (taxid: 203124) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 8 |
| >sp|P59303|ARGB_THEEB Acetylglutamate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=argB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/282 (64%), Positives = 221/282 (78%), Gaps = 4/282 (1%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHG 136
RV +LSE+LP++Q F G+T VVKYGGAAMK Q L SV++D+V LS VG+RPV+VHG
Sbjct: 7 RVRVLSEALPYLQAFAGRTFVVKYGGAAMKEEQ---LKDSVIRDIVFLSYVGIRPVVVHG 63
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GGPEIN WL + IEP F++GLRVTDA TM++V MVLVGRVNK +V+LIN+AG AVGL
Sbjct: 64 GGPEINTWLAKLNIEPQFKNGLRVTDAATMDVVEMVLVGRVNKEIVTLINQAGGQAVGLC 123
Query: 197 GMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G DG L AR + + +GFVGEV VD VI LV G+IPVI+SVAAD+ GQ+YNINA
Sbjct: 124 GKDGNLIRAR-AKGEESIGFVGEVQGVDTRVITALVEKGYIPVISSVAADDTGQAYNINA 182
Query: 257 DTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
DTVAGE+AAALGAEKLILLTD AGIL + DP +L+ +DI +++I+DG V GGMIPK
Sbjct: 183 DTVAGEIAAALGAEKLILLTDTAGILRDYRDPSTLIYRLDIAEARQLIKDGVVSGGMIPK 242
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
V CC+RSLAQGV+ A IIDGRV H+LLLEI TD+G G+M+ G
Sbjct: 243 VTCCVRSLAQGVKAAHIIDGRVPHALLLEIFTDSGIGSMLVG 284
|
Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | ||||||
| 224115652 | 351 | predicted protein [Populus trichocarpa] | 0.784 | 0.800 | 0.823 | 1e-131 | |
| 225429874 | 351 | PREDICTED: acetylglutamate kinase, chlor | 0.899 | 0.917 | 0.708 | 1e-131 | |
| 296081814 | 383 | unnamed protein product [Vitis vinifera] | 0.899 | 0.840 | 0.708 | 1e-130 | |
| 356515515 | 343 | PREDICTED: acetylglutamate kinase, chlor | 0.896 | 0.935 | 0.733 | 1e-130 | |
| 224121464 | 292 | predicted protein [Populus trichocarpa] | 0.815 | 1.0 | 0.793 | 1e-130 | |
| 255555459 | 361 | Acetylglutamate kinase, putative [Ricinu | 0.810 | 0.803 | 0.798 | 1e-129 | |
| 224149887 | 279 | predicted protein [Populus trichocarpa] | 0.779 | 1.0 | 0.808 | 1e-127 | |
| 449441972 | 351 | PREDICTED: acetylglutamate kinase, chlor | 0.829 | 0.846 | 0.79 | 1e-126 | |
| 229463801 | 298 | N-acetylglutamate kinase [Populus maximo | 0.810 | 0.973 | 0.773 | 1e-125 | |
| 449499577 | 352 | PREDICTED: acetylglutamate kinase, chlor | 0.829 | 0.843 | 0.79 | 1e-125 |
| >gi|224115652|ref|XP_002332109.1| predicted protein [Populus trichocarpa] gi|222874929|gb|EEF12060.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/284 (82%), Positives = 259/284 (91%), Gaps = 3/284 (1%)
Query: 75 EFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLV 134
+FRVDILSESLP+IQKFRGKT+VVKYGGAAMK + L ASVV DLVLLS VGLRPVLV
Sbjct: 71 QFRVDILSESLPYIQKFRGKTVVVKYGGAAMK---QPELKASVVSDLVLLSCVGLRPVLV 127
Query: 135 HGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVG 194
HGGGPEIN WLK IEP+F +GLRVTDA TMEIVSMVLVG+VNK LVSLINKAGATAVG
Sbjct: 128 HGGGPEINHWLKLLNIEPLFHEGLRVTDAKTMEIVSMVLVGKVNKDLVSLINKAGATAVG 187
Query: 195 LSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNI 254
LSGMDGRL A+P+PNS KLGFVGEVARVDPT+++PLVN+GHIPVIASVAADE GQSYNI
Sbjct: 188 LSGMDGRLLMAKPTPNSAKLGFVGEVARVDPTILQPLVNNGHIPVIASVAADELGQSYNI 247
Query: 255 NADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMI 314
NADTVAGE+AAALGAEKLILLTDVAGILEN++DP SLV+EIDIKGVKK+IE+ KVGGGMI
Sbjct: 248 NADTVAGEVAAALGAEKLILLTDVAGILENKDDPGSLVREIDIKGVKKLIEEKKVGGGMI 307
Query: 315 PKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
PKVNCC+ SL+QGVRTASIIDGRV+HSLL EI+++ G GTMITG
Sbjct: 308 PKVNCCVASLSQGVRTASIIDGRVQHSLLHEIMSEEGIGTMITG 351
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225429874|ref|XP_002283505.1| PREDICTED: acetylglutamate kinase, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/346 (70%), Positives = 280/346 (80%), Gaps = 24/346 (6%)
Query: 13 PFLQSQLSFSSKSKAGSQSPSVFKIKTPHVENFASNHRTEITKSSRSLTSAATAVTDTQT 72
PFL+S L+ + P++ P ++ S + I +SS+S
Sbjct: 30 PFLKSSLNSTP------NRPTI----VPSIKASLSTSQPPILESSKS-----------DL 68
Query: 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPV 132
+ RV+ILSESLPFIQKFRGKTIVVKYGGAAMK +L ASV+ DLVLLS VGLRPV
Sbjct: 69 AGQLRVEILSESLPFIQKFRGKTIVVKYGGAAMK---SPDLQASVINDLVLLSCVGLRPV 125
Query: 133 LVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATA 192
VHGGGPEIN WL RFG+EP F +GLRVTD +TMEIV+MVLVG+VNK LVSLINKAGATA
Sbjct: 126 FVHGGGPEINLWLGRFGLEPNFLNGLRVTDHSTMEIVTMVLVGKVNKHLVSLINKAGATA 185
Query: 193 VGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSY 252
VGLSGMDGRL TARP+PNS +LGFVG+VARVDPT++ PL+++ HIPVIASVA+DE GQSY
Sbjct: 186 VGLSGMDGRLLTARPNPNSAQLGFVGDVARVDPTILRPLIDNNHIPVIASVASDETGQSY 245
Query: 253 NINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGG 312
NINADTVAGELAA+LGAEKLILLTDVAGILENR+DP SLVK+IDIKGVKKM +GK+GGG
Sbjct: 246 NINADTVAGELAASLGAEKLILLTDVAGILENRDDPSSLVKQIDIKGVKKMEGEGKIGGG 305
Query: 313 MIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
MIPKVNCC+RSLAQGVRTASIIDGR+ HSLLLEILTD GAGTMITG
Sbjct: 306 MIPKVNCCVRSLAQGVRTASIIDGRLPHSLLLEILTDEGAGTMITG 351
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081814|emb|CBI20819.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/346 (70%), Positives = 280/346 (80%), Gaps = 24/346 (6%)
Query: 13 PFLQSQLSFSSKSKAGSQSPSVFKIKTPHVENFASNHRTEITKSSRSLTSAATAVTDTQT 72
PFL+S L+ + P++ P ++ S + I +SS+S
Sbjct: 62 PFLKSSLNSTP------NRPTI----VPSIKASLSTSQPPILESSKS-----------DL 100
Query: 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPV 132
+ RV+ILSESLPFIQKFRGKTIVVKYGGAAMK +L ASV+ DLVLLS VGLRPV
Sbjct: 101 AGQLRVEILSESLPFIQKFRGKTIVVKYGGAAMK---SPDLQASVINDLVLLSCVGLRPV 157
Query: 133 LVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATA 192
VHGGGPEIN WL RFG+EP F +GLRVTD +TMEIV+MVLVG+VNK LVSLINKAGATA
Sbjct: 158 FVHGGGPEINLWLGRFGLEPNFLNGLRVTDHSTMEIVTMVLVGKVNKHLVSLINKAGATA 217
Query: 193 VGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSY 252
VGLSGMDGRL TARP+PNS +LGFVG+VARVDPT++ PL+++ HIPVIASVA+DE GQSY
Sbjct: 218 VGLSGMDGRLLTARPNPNSAQLGFVGDVARVDPTILRPLIDNNHIPVIASVASDETGQSY 277
Query: 253 NINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGG 312
NINADTVAGELAA+LGAEKLILLTDVAGILENR+DP SLVK+IDIKGVKKM +GK+GGG
Sbjct: 278 NINADTVAGELAASLGAEKLILLTDVAGILENRDDPSSLVKQIDIKGVKKMEGEGKIGGG 337
Query: 313 MIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
MIPKVNCC+RSLAQGVRTASIIDGR+ HSLLLEILTD GAGTMITG
Sbjct: 338 MIPKVNCCVRSLAQGVRTASIIDGRLPHSLLLEILTDEGAGTMITG 383
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515515|ref|XP_003526445.1| PREDICTED: acetylglutamate kinase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/330 (73%), Positives = 270/330 (81%), Gaps = 9/330 (2%)
Query: 35 FKIKTPHVENFASNHRTEITK-SSRSLTSAATAVTD-----TQTPAEFRVDILSESLPFI 88
F T ++H T+ R++++ A A T T ++RVD+LSESLPFI
Sbjct: 17 FPFPTKPQNQLTTSHAFPSTRLRHRAISAVANAAQPPLAAATATEGQYRVDVLSESLPFI 76
Query: 89 QKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRF 148
QKFRGKTIVVKYGGAAMK + L ASV+ DLVLLS VGLRPVLVHGGGPEIN WL R
Sbjct: 77 QKFRGKTIVVKYGGAAMKSPE---LQASVINDLVLLSCVGLRPVLVHGGGPEINSWLGRL 133
Query: 149 GIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPS 208
I VFRDGLRVTDA+TMEIVSMVLVG+VNK+LVSLINKAGATAVGLSGMDGRL TARP+
Sbjct: 134 NIPAVFRDGLRVTDADTMEIVSMVLVGKVNKTLVSLINKAGATAVGLSGMDGRLLTARPA 193
Query: 209 PNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALG 268
P + LG+VGEVARVDP V+ L+++ HIPV+ SVAADE GQ YNINADTVAGELAA+LG
Sbjct: 194 PKAADLGYVGEVARVDPAVLRSLIDTSHIPVVTSVAADESGQPYNINADTVAGELAASLG 253
Query: 269 AEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGV 328
AEKLILLTDVAGILE+R DP SLVK+IDIKGVKKM+EDGKVGGGMIPKVNCC+RSLAQGV
Sbjct: 254 AEKLILLTDVAGILEDRNDPDSLVKKIDIKGVKKMMEDGKVGGGMIPKVNCCVRSLAQGV 313
Query: 329 RTASIIDGRVEHSLLLEILTDAGAGTMITG 358
TASIIDGRV HSLLLEILTD GAGTMITG
Sbjct: 314 ITASIIDGRVPHSLLLEILTDEGAGTMITG 343
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121464|ref|XP_002330834.1| predicted protein [Populus trichocarpa] gi|222872636|gb|EEF09767.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/295 (79%), Positives = 261/295 (88%), Gaps = 3/295 (1%)
Query: 64 ATAVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVL 123
AT T T + +FRVDILSESLP+IQKFRGKTIVVKYGGAAMK + L ASVV DLVL
Sbjct: 1 ATIPTPTTSANQFRVDILSESLPYIQKFRGKTIVVKYGGAAMK---QPELKASVVSDLVL 57
Query: 124 LSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVS 183
LS VGLRPVLVHGGGPEIN WLK IEP+F +GLRVTDA TMEIVSMVLVG+VNK LVS
Sbjct: 58 LSCVGLRPVLVHGGGPEINHWLKLLNIEPLFHEGLRVTDAKTMEIVSMVLVGKVNKDLVS 117
Query: 184 LINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV 243
LINKAGATAVGLSGMDGRL A+P+ S +LGFVGEVARVDPT+++PLVN+GHIPVIASV
Sbjct: 118 LINKAGATAVGLSGMDGRLLMAKPTSKSAQLGFVGEVARVDPTILQPLVNNGHIPVIASV 177
Query: 244 AADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKM 303
AADE GQSYNINADTVAGE+AAALGAEKLILLTDVAGILEN++DP SL+KEIDIKGVKK+
Sbjct: 178 AADELGQSYNINADTVAGEVAAALGAEKLILLTDVAGILENKDDPGSLLKEIDIKGVKKL 237
Query: 304 IEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
I++ KV GGMIPKVNCC+ SL+QGVRTASIIDGRV+HSLL EI+++ G GTMITG
Sbjct: 238 IDEKKVAGGMIPKVNCCVASLSQGVRTASIIDGRVQHSLLHEIMSEEGIGTMITG 292
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555459|ref|XP_002518766.1| Acetylglutamate kinase, putative [Ricinus communis] gi|223542147|gb|EEF43691.1| Acetylglutamate kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/293 (79%), Positives = 260/293 (88%), Gaps = 3/293 (1%)
Query: 66 AVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLS 125
+V+ + + FRVDILSESLP+IQKFRGKT+VVKYGGAAMK + L ASVV DLVLLS
Sbjct: 72 SVSQSNSQDRFRVDILSESLPYIQKFRGKTVVVKYGGAAMKVPE---LKASVVSDLVLLS 128
Query: 126 VVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLI 185
VGLRP+LVHGGGPEIN +LK IEPVF DGLRVTDA TMEIVSMVLVG+VNK LVSLI
Sbjct: 129 CVGLRPILVHGGGPEINNFLKLLNIEPVFHDGLRVTDAKTMEIVSMVLVGKVNKDLVSLI 188
Query: 186 NKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAA 245
NKAGATAVGLSGMDGRL ARP+PNS LGFVGEVA VD T++EPL+N+G IPVIASVAA
Sbjct: 189 NKAGATAVGLSGMDGRLLMARPNPNSKHLGFVGEVASVDKTLLEPLINNGFIPVIASVAA 248
Query: 246 DEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIE 305
D+FGQSYNINADTVAGE+AAALGAEKLILLTDVAGILE+++DP SLVKEIDIKGVKKMI+
Sbjct: 249 DQFGQSYNINADTVAGEIAAALGAEKLILLTDVAGILEDKDDPTSLVKEIDIKGVKKMID 308
Query: 306 DGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
+ KV GGMIPKVNCC+RSLAQGVRTASIIDGRVEHSLL EI+++ G GTMITG
Sbjct: 309 EKKVAGGMIPKVNCCVRSLAQGVRTASIIDGRVEHSLLHEIMSEEGIGTMITG 361
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224149887|ref|XP_002336878.1| predicted protein [Populus trichocarpa] gi|222837045|gb|EEE75424.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/282 (80%), Positives = 254/282 (90%), Gaps = 3/282 (1%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHG 136
RVDILSESLP+IQKFRGKT+VVKYGGAAMK + L ASVV DLVLLS VGLRPVLVHG
Sbjct: 1 RVDILSESLPYIQKFRGKTVVVKYGGAAMK---QPELKASVVSDLVLLSCVGLRPVLVHG 57
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GGPEIN WLK IEP+F +GLRVTDA TMEIVSMVLVG+VNK LVSLINKAGATAVGLS
Sbjct: 58 GGPEINHWLKLLNIEPLFHEGLRVTDAKTMEIVSMVLVGKVNKDLVSLINKAGATAVGLS 117
Query: 197 GMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
GMDGRL A+P+ S +LGFVGEVARVDPT+++PLVN+GHIPVIASVAADE GQSYNINA
Sbjct: 118 GMDGRLLMAKPTSKSAQLGFVGEVARVDPTILQPLVNNGHIPVIASVAADELGQSYNINA 177
Query: 257 DTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
DTVAGE+AAALGAEKLILLTDVAGILEN++DP SL+KEIDIKGVKK+I++ KV GGMIPK
Sbjct: 178 DTVAGEVAAALGAEKLILLTDVAGILENKDDPGSLLKEIDIKGVKKLIDEKKVAGGMIPK 237
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
VNCC+ SL+QGVRTASIIDGRV+HSLL EI+++ G GTMITG
Sbjct: 238 VNCCVASLSQGVRTASIIDGRVQHSLLHEIMSEEGIGTMITG 279
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441972|ref|XP_004138756.1| PREDICTED: acetylglutamate kinase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 237/300 (79%), Positives = 266/300 (88%), Gaps = 3/300 (1%)
Query: 59 SLTSAATAVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVV 118
S T AV D+ TP +FRVD+LSESLPFIQKFRGKTIVVKYGGAAMK +L ASVV
Sbjct: 55 SATQQMEAVVDSVTPGQFRVDVLSESLPFIQKFRGKTIVVKYGGAAMKSR---SLQASVV 111
Query: 119 KDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVN 178
DLVLLS VGLRP+LVHGGGPEIN WLKR IE VFRDGLRVTDA TM+IVSMVLVG VN
Sbjct: 112 NDLVLLSCVGLRPILVHGGGPEINNWLKRLNIEVVFRDGLRVTDAETMKIVSMVLVGDVN 171
Query: 179 KSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIP 238
K+LVSLINKAGA+A GL G+DGRL ARP+PN+ +LGFVGEVARVDPTV++ L++ GHIP
Sbjct: 172 KNLVSLINKAGASAAGLCGVDGRLLMARPAPNAAQLGFVGEVARVDPTVLQALLDKGHIP 231
Query: 239 VIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIK 298
V++SVAADE GQ YNINADTVAGELAAALGAEKLILLTDVAGILE+R+DP SLVK+IDIK
Sbjct: 232 VVSSVAADESGQMYNINADTVAGELAAALGAEKLILLTDVAGILEDRDDPKSLVKQIDIK 291
Query: 299 GVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
GVKKM+++G++GGGMIPKVNCC+RSLAQGVRTASIIDGR+EHSLLLEI+TD GAGTMI G
Sbjct: 292 GVKKMMDEGRIGGGMIPKVNCCVRSLAQGVRTASIIDGRLEHSLLLEIMTDNGAGTMIIG 351
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|229463801|gb|ACQ66326.1| N-acetylglutamate kinase [Populus maximowiczii x Populus nigra] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 229/296 (77%), Positives = 257/296 (86%), Gaps = 6/296 (2%)
Query: 47 SNHRTEITKSSRSLTSAATAVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMK 106
S+H +T S ++AAT T T + +FRVDILSESLP+IQKFRGKTIVVKYGGAAMK
Sbjct: 9 SHHSHSLTIKS---SAAATIPTPTTSANQFRVDILSESLPYIQKFRGKTIVVKYGGAAMK 65
Query: 107 PNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM 166
+ L ASVV DLVLLS VGLRPVLVHGGGPEIN WLK IEP+F +GLRVTDA TM
Sbjct: 66 ---QPELKASVVSDLVLLSCVGLRPVLVHGGGPEINHWLKLLNIEPLFHEGLRVTDAKTM 122
Query: 167 EIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPT 226
EIVSMVLVG+VNK LVSLINKAGATAVGLSGMDGRL A+P+ S +LGFVGEVARVDPT
Sbjct: 123 EIVSMVLVGKVNKDLVSLINKAGATAVGLSGMDGRLLMAKPTSKSAQLGFVGEVARVDPT 182
Query: 227 VIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE 286
+++PLVN+GHIPVIASVAADE GQSYNINADTVAGE+AAALGAEKLILLTDVAGILEN++
Sbjct: 183 ILQPLVNNGHIPVIASVAADELGQSYNINADTVAGEVAAALGAEKLILLTDVAGILENKD 242
Query: 287 DPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSL 342
DP SL+KEIDIKGVKK+I++ KV GGMIPKVNCC+ SL+QGVRTASIIDGRV+HSL
Sbjct: 243 DPGSLLKEIDIKGVKKLIDEKKVAGGMIPKVNCCVASLSQGVRTASIIDGRVQHSL 298
|
Source: Populus maximowiczii x Populus nigra Species: Populus maximowiczii x Populus nigra Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449499577|ref|XP_004160854.1| PREDICTED: acetylglutamate kinase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 237/300 (79%), Positives = 266/300 (88%), Gaps = 3/300 (1%)
Query: 59 SLTSAATAVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVV 118
S T AV D+ TP +FRVD+LSESLPFIQKFRGKTIVVKYGGAAMK +L ASVV
Sbjct: 56 SATQQMEAVVDSVTPGQFRVDVLSESLPFIQKFRGKTIVVKYGGAAMKSR---SLQASVV 112
Query: 119 KDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVN 178
DLVLLS VGLRP+LVHGGGPEIN WLKR IE VFRDGLRVTDA TM+IVSMVLVG VN
Sbjct: 113 NDLVLLSCVGLRPILVHGGGPEINNWLKRLNIEVVFRDGLRVTDAETMKIVSMVLVGDVN 172
Query: 179 KSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIP 238
K+LVSLINKAGA+A GL G+DGRL ARP+PN+ +LGFVGEVARVDPTV++ L++ GHIP
Sbjct: 173 KNLVSLINKAGASAAGLCGVDGRLLMARPAPNAAQLGFVGEVARVDPTVLQALLDKGHIP 232
Query: 239 VIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIK 298
V++SVAADE GQ YNINADTVAGELAAALGAEKLILLTDVAGILE+R+DP SLVK+IDIK
Sbjct: 233 VVSSVAADESGQMYNINADTVAGELAAALGAEKLILLTDVAGILEDRDDPKSLVKQIDIK 292
Query: 299 GVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
GVKKM+++G++GGGMIPKVNCC+RSLAQGVRTASIIDGR+EHSLLLEI+TD GAGTMI G
Sbjct: 293 GVKKMMDEGRIGGGMIPKVNCCVRSLAQGVRTASIIDGRLEHSLLLEIMTDNGAGTMIIG 352
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | ||||||
| TAIR|locus:2103528 | 347 | NAGK "N-acetyl-l-glutamate kin | 0.857 | 0.884 | 0.664 | 5.6e-100 | |
| UNIPROTKB|Q6V1L5 | 301 | argB "Acetylglutamate kinase" | 0.776 | 0.923 | 0.581 | 2.3e-78 | |
| TIGR_CMR|CHY_2263 | 294 | CHY_2263 "acetylglutamate kina | 0.776 | 0.945 | 0.451 | 2.5e-58 | |
| TIGR_CMR|GSU_0150 | 292 | GSU_0150 "acetylglutamate kina | 0.765 | 0.938 | 0.441 | 1.4e-55 | |
| UNIPROTKB|P0A4Y6 | 294 | argB "Acetylglutamate kinase" | 0.779 | 0.948 | 0.391 | 1.4e-48 | |
| TIGR_CMR|ECH_0594 | 321 | ECH_0594 "acetylglutamate kina | 0.756 | 0.844 | 0.401 | 4.7e-48 | |
| TIGR_CMR|CJE_0277 | 279 | CJE_0277 "acetylglutamate kina | 0.759 | 0.974 | 0.360 | 1.6e-45 | |
| TIGR_CMR|SPO_0526 | 287 | SPO_0526 "acetylglutamate kina | 0.748 | 0.933 | 0.384 | 3.1e-44 | |
| TIGR_CMR|BA_4353 | 255 | BA_4353 "acetylglutamate kinas | 0.553 | 0.776 | 0.419 | 8.3e-35 | |
| TIGR_CMR|APH_0422 | 327 | APH_0422 "acetylglutamate kina | 0.765 | 0.837 | 0.334 | 5.8e-34 |
| TAIR|locus:2103528 NAGK "N-acetyl-l-glutamate kinase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
Identities = 208/313 (66%), Positives = 238/313 (76%)
Query: 47 SNHRTEITKSSRSLTSAATAVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAM- 105
++HR + + T + A + +P ++RV+ILSESLPFIQKFRGKTIVVKYGGAAM
Sbjct: 40 NHHRLGFSIKATVSTPPSIATGNAPSP-DYRVEILSESLPFIQKFRGKTIVVKYGGAAMT 98
Query: 106 KPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANT 165
P K + RP+LVHGGGP+IN +LK+ I FRDGLRVTDA T
Sbjct: 99 SPELKSSVVSDLVLLACVGL----RPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATT 154
Query: 166 MEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDP 225
MEIVSMVLVG+VNK+LVSLIN AGATAVGLSG DGRL TARP PNS +LGFVGEVARVDP
Sbjct: 155 MEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDP 214
Query: 226 TVIEPLVNSGHIPVIASVAADEFGQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENR 285
+V+ PLV+ G+IPVIASVAAD+ GQ+YNINADTV TDVAGILEN+
Sbjct: 215 SVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENK 274
Query: 286 EDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLE 345
EDP SL+KEIDIKGVKKMIEDGKV GGMIPKV CCIRSLAQGV+TASIIDGR +HSLL E
Sbjct: 275 EDPSSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHE 334
Query: 346 ILTDAGAGTMITG 358
I++D GAGTMITG
Sbjct: 335 IMSDEGAGTMITG 347
|
|
| UNIPROTKB|Q6V1L5 argB "Acetylglutamate kinase" [Synechococcus elongatus PCC 7942 (taxid:1140)] | Back alignment and assigned GO terms |
|---|
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 164/282 (58%), Positives = 196/282 (69%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHG 136
RV ILSE+LP++Q+F G+T+VVKYGGAAMK ++ RPV+VHG
Sbjct: 13 RVRILSEALPYLQQFAGRTVVVKYGGAAMK---QEELKEAVMRDIVFLACVGMRPVVVHG 69
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GGPEIN WL R GIEP F +GLRVTDA+TME+V MVLVGRVNK +VS IN G AVG
Sbjct: 70 GGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFC 129
Query: 197 GMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G DGRL ARP + + +GFVGEV V+ VIEPL+ G+IPVI+SVAADE GQS+NINA
Sbjct: 130 GTDGRLVLARPH-DQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINA 188
Query: 257 DTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
DTV TD GILE+ + P SL+ ++I +++I G VGGGMIPK
Sbjct: 189 DTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPK 248
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
V+CCIRSLAQGVR A IIDGR+ H+LLLEI TDAG GTMI G
Sbjct: 249 VDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVG 290
|
|
| TIGR_CMR|CHY_2263 CHY_2263 "acetylglutamate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 131/290 (45%), Positives = 173/290 (59%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHG 136
+ +L E+LP+I+KF GKTIV+KYGG AM D PV+VHG
Sbjct: 7 KTKVLIEALPYIKKFYGKTIVIKYGGHAMV---SDQLKEAVINDLVLMKFVGINPVVVHG 63
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GGPEI+ L + I+ F +GLRVTD T+E+V MVLVG+VNK +V LI KAG AVGLS
Sbjct: 64 GGPEISRMLNKLNIKSNFINGLRVTDEATLEVVEMVLVGKVNKEIVGLIEKAGGKAVGLS 123
Query: 197 GMDGRLFTAR------PSPNSDK---LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247
G D L A P P ++ LG+VGE++ V+P ++ L++ G+IPV+A V ++
Sbjct: 124 GKDAGLIKAHKKLAKNPEPTGEEYLDLGYVGEISEVNPEILLTLIDKGYIPVVAPVGSNG 183
Query: 248 FGQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307
G+ YNINAD V TD GIL N +D SL+ + I VK++I G
Sbjct: 184 SGEFYNINADEVAAEVAVALKADKLIVLTDTPGILLNEKDENSLLSKATIAEVKELINRG 243
Query: 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357
+ GGMIPK I ++ +GV + IIDGR+ HSLLLEI TDAG GTM+T
Sbjct: 244 VIRGGMIPKAESAISAIKRGVGSVHIIDGRIAHSLLLEIFTDAGVGTMLT 293
|
|
| TIGR_CMR|GSU_0150 GSU_0150 "acetylglutamate kinase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 128/290 (44%), Positives = 171/290 (58%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHG 136
+ + L E+LP+I++F GKTIV+KYGG AM + PV+VHG
Sbjct: 7 KANTLMEALPYIRRFSGKTIVIKYGGHAMAD---EALKESFALDVIMLKSLGINPVVVHG 63
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GGP+IN LKR+GI F G+RVTDA TM++V MVL G+VNK +V +N+ G AVGLS
Sbjct: 64 GGPQINETLKRYGIVSEFVKGMRVTDAATMQVVEMVLTGQVNKEVVGYLNQHGGRAVGLS 123
Query: 197 GMDGRLFTARP----------SPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAAD 246
G DG L R + S +GFVG+V +V+ +I+ L + IPVIA V
Sbjct: 124 GKDGNLLLCRKLLQEVRQDDGTVESVDIGFVGDVVKVNQELIQTLEHGKFIPVIAPVGVG 183
Query: 247 EFGQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIED 306
E G+SYN+NAD V TDVAG+ ++ +L+ I + V +I+D
Sbjct: 184 EQGESYNVNADLVAGRVAGALRAEKLILLTDVAGV---KDKAGALLSSIRLDTVPGLIDD 240
Query: 307 GKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
G + GGMIPKV CC+ ++ +GVR ASIIDGRV H++LLEI TD G GT I
Sbjct: 241 GVITGGMIPKVTCCVDAIEEGVRKASIIDGRVLHAVLLEIFTDVGVGTEI 290
|
|
| UNIPROTKB|P0A4Y6 argB "Acetylglutamate kinase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 113/289 (39%), Positives = 162/289 (56%)
Query: 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPV 132
P + +L+E+LP++++ GK +VVKYGG AM D PV
Sbjct: 8 PTHIKAQVLAEALPWLKQLHGKVVVVKYGGNAMTD---DTLRRAFAADMAFLRNCGIHPV 64
Query: 133 LVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATA 192
+VHGGGP+I L+R GIE F+ G RVT +++ MVL G+V + LV+LIN G A
Sbjct: 65 VVHGGGPQITAMLRRLGIEGDFKGGFRVTTPEVLDVARMVLFGQVGRELVNLINAHGPYA 124
Query: 193 VGLSGMDGRLFTA-RPSPNSD----KLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247
VG++G D +LFTA R S D +G VG+V +V+ + LV +G IPV++++A D
Sbjct: 125 VGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDA 184
Query: 248 FGQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307
G +NINADT TD+ G+ D SLV EID + +++
Sbjct: 185 DGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDRDSLVSEIDTGTLAQLLPT- 243
Query: 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
+ GM+PKV C+R++ GV +A IIDGRV H +L+E+ TDAG GT +
Sbjct: 244 -LESGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKV 291
|
|
| TIGR_CMR|ECH_0594 ECH_0594 "acetylglutamate kinase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 116/289 (40%), Positives = 160/289 (55%)
Query: 80 ILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGP 139
+LSESLP+IQ+F G+T ++KYGGAAMK + P++VHGGG
Sbjct: 34 VLSESLPYIQQFSGETFIIKYGGAAMKDRK---LAENFAHDIVLLKQLGINPIVVHGGGS 90
Query: 140 EINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMD 199
+IN +L++ + F +GLRVTDA T+EIV MVL G VNK + LINKAG A+GL G D
Sbjct: 91 KINEFLEKINKKSTFVNGLRVTDAETLEIVEMVLCGLVNKDITQLINKAGGNAIGLCGKD 150
Query: 200 GRLFTARP---------SPNSDKL---GFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247
L A+ S N +K+ GFVGE V+ ++ + S IPVIA V + E
Sbjct: 151 ANLIEAKKVCYTYKENQSNNVEKILDMGFVGEPHEVNTDLLFFMEESDFIPVIAPVCSGE 210
Query: 248 FGQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307
+YN+NAD V T+V G+ + + L+ EI + + +IE G
Sbjct: 211 NDLTYNVNADLVAGALANALAAAKLIILTNVPGVTDVNGN---LLSEISVSNAESLIEQG 267
Query: 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
GMIPK+ CI+ + +G +A IIDGR+ H LLLE+ T G GTM+
Sbjct: 268 IANAGMIPKLQTCIKVVKEGYGSAHIIDGRIPHVLLLELFTIHGTGTMV 316
|
|
| TIGR_CMR|CJE_0277 CJE_0277 "acetylglutamate kinase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
Identities = 101/280 (36%), Positives = 155/280 (55%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHG 136
+ ++L E+LP+I+KF K I++KYGG+AM + + +P++VHG
Sbjct: 7 KANVLIEALPYIRKFNSKIILIKYGGSAM---ENEELKHCVMQDIALLKLVGLKPIIVHG 63
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GG +I+ ++ G++ F++GLRV+D T E+ SMVL +NK+LV + G A+GL
Sbjct: 64 GGKDISAMCEKLGVKSEFKNGLRVSDKATTEVASMVL-NHINKNLVHSLQNLGVKAIGLC 122
Query: 197 GMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G DG L + L FVG + +V+ ++E L+ +P+IA + DE +YNINA
Sbjct: 123 GKDGALLEC--VKKDENLAFVGTIQKVNSKILEELLEKDFLPIIAPIGMDENFNTYNINA 180
Query: 257 DTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
D V TD AG+ E+ D SL+ +I ++ K + K+ GGM K
Sbjct: 181 DDVACAIAKALRAEKLAFLTDTAGLYEDFNDKNSLISKISLEQAKILAP--KIEGGMHVK 238
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
+ CI + GV+ I+DGRV+HSLLLE TD G GT++
Sbjct: 239 LKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGIGTLV 278
|
|
| TIGR_CMR|SPO_0526 SPO_0526 "acetylglutamate kinase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 106/276 (38%), Positives = 153/276 (55%)
Query: 81 LSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGPE 140
L+ +LP++Q++ +V+K GG AM D PV+VHGGGP
Sbjct: 17 LNAALPYLQRYDDAIVVIKLGGHAMG---SDEAMESFARDVVLLRQVGVNPVVVHGGGPM 73
Query: 141 INFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDG 200
IN LK+ I+ F +G RVTD T+E+V MVL G VNK +V IN+ G AVGLSG D
Sbjct: 74 INAMLKKLDIQSEFVNGKRVTDVATVEVVEMVLSGVVNKRIVQEINRQGGKAVGLSGKDA 133
Query: 201 RLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVX 260
L + N D LGFVG ++P ++ L IPVIA + A G+++N+N DT
Sbjct: 134 NLMICDQT-NPD-LGFVGTPTEMNPDLLRNLFAHDIIPVIAPLGAGREGETFNVNGDTAA 191
Query: 261 XXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCC 320
TDV+G+ +N E ++ E+ +++MI DG + GGMIPK
Sbjct: 192 GAIAAALKADRLLLLTDVSGV-KNGEG--EVLTELKAGQIREMIADGTIAGGMIPKTETA 248
Query: 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
+ +L GVR I+DGRV++++LLE+ T+ GAG++I
Sbjct: 249 LDALDNGVRAVVILDGRVDNAVLLELYTEHGAGSLI 284
|
|
| TIGR_CMR|BA_4353 BA_4353 "acetylglutamate kinase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 86/205 (41%), Positives = 116/205 (56%)
Query: 132 VLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGAT 191
V+VHGGGPEI+ LK I RDGLRVT M++V MVL G NK V + K
Sbjct: 35 VIVHGGGPEIDAKLKDCNINVEKRDGLRVTPKEVMDVVQMVLCGSTNKKFVMNLQKHNLL 94
Query: 192 AVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQS 251
AVG SG DG+L +P S+++G+VGEV+ V+ +++ L+N +IPVIA + + +
Sbjct: 95 AVGCSGCDGKLLQVQPV--SEEIGYVGEVSYVETALLKGLINMNYIPVIAPIGIHD-NEI 151
Query: 252 YNINADTVXXXXXXXXXXXXXXXXTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGG 311
YNINADT TDV GIL + LVK+ D + +IE G + G
Sbjct: 152 YNINADTAAAGIAAALSAKELILITDVDGILHEGK----LVKKTDESEIATLIEKGVITG 207
Query: 312 GMIPKVNCCIRSLAQGVRTASIIDG 336
GMIPKV + SL GV+ SI++G
Sbjct: 208 GMIPKVQAALASLKMGVQKISIVNG 232
|
|
| TIGR_CMR|APH_0422 APH_0422 "acetylglutamate kinase" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 98/293 (33%), Positives = 146/293 (49%)
Query: 80 ILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNXXXXXXXXXXXXXXXXXRPVLVHGGGP 139
+LSES+ I +F G+T V+KY G A+ Q P++VHGG
Sbjct: 35 VLSESIKSIHQFSGETFVIKYDGTAL---QDKRLADSFASDIVLLKQVGIHPIIVHGGNY 91
Query: 140 EINFWLKRFGI-EPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGM 198
+ L++FG E VF + RV D+ +EI MVL G VNK +V IN+ G AVG+SG
Sbjct: 92 RVEEVLEKFGKKEGVFVNDFRVVDSEVLEITEMVLSGLVNKEIVQTINENGGYAVGISGK 151
Query: 199 DGRL-------FTARPS-PNS-DKL---GFVGEVARVDPTVIEPLVNSGHIPVIASVAAD 246
D L FTAR PN+ +K+ GFVGE V+ ++ L S IP+++ +
Sbjct: 152 DACLVEAKKVCFTARNGQPNNVEKIMDIGFVGEPQSVNTELLFFLEESDFIPIVSPICRG 211
Query: 247 EFGQSYNINADTVXXXXXXXXXXXXXXXXTDVAGILENRE-DPMSLVKEIDIKGVKKMIE 305
G ++ +N D V TD A ++N + D LV ++ +K++
Sbjct: 212 PNGMTHVVNPDLVAGAIASSLSAAKLVILTDSAEDIKNMQHDDELLVGTVE--QAEKLLN 269
Query: 306 DGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
DGKV M+ ++ CI+ + TA ++DG + H LL+E+ T G GT I G
Sbjct: 270 DGKVCETMVQRLQTCIKFARETCGTAHVVDGSIPHILLMELFTINGTGTSICG 322
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7VD84 | ARGB_PROMA | 2, ., 7, ., 2, ., 8 | 0.6014 | 0.7737 | 0.9111 | yes | no |
| Q31C34 | ARGB_PROM9 | 2, ., 7, ., 2, ., 8 | 0.5428 | 0.7709 | 0.9752 | yes | no |
| Q116Q9 | ARGB_TRIEI | 2, ., 7, ., 2, ., 8 | 0.6241 | 0.7960 | 0.9760 | yes | no |
| B0K4D4 | ARGB_THEPX | 2, ., 7, ., 2, ., 8 | 0.5321 | 0.7737 | 0.9264 | yes | no |
| B8FWU9 | ARGB_DESHD | 2, ., 7, ., 2, ., 8 | 0.5066 | 0.7821 | 0.9395 | yes | no |
| Q0AUM4 | ARGB_SYNWW | 2, ., 7, ., 2, ., 8 | 0.5053 | 0.7765 | 0.9686 | yes | no |
| A2BVG1 | ARGB_PROM5 | 2, ., 7, ., 2, ., 8 | 0.5744 | 0.7765 | 0.9823 | yes | no |
| Q0I8J0 | ARGB_SYNS3 | 2, ., 7, ., 2, ., 8 | 0.6113 | 0.7793 | 0.9789 | yes | no |
| Q9SCL7 | NAGK_ARATH | 2, ., 7, ., 2, ., 8 | 0.75 | 0.8603 | 0.8876 | yes | no |
| A3PBM4 | ARGB_PROM0 | 2, ., 7, ., 2, ., 8 | 0.5464 | 0.7709 | 0.9752 | yes | no |
| Q6V1L5 | ARGB_SYNE7 | 2, ., 7, ., 2, ., 8 | 0.6560 | 0.7765 | 0.9235 | yes | no |
| Q7NEE9 | ARGB_GLOVI | 2, ., 7, ., 2, ., 8 | 0.5771 | 0.8128 | 0.9603 | yes | no |
| Q3A9W2 | ARGB_CARHZ | 2, ., 7, ., 2, ., 8 | 0.5137 | 0.7765 | 0.9455 | yes | no |
| B2IX33 | ARGB_NOSP7 | 2, ., 7, ., 2, ., 8 | 0.6354 | 0.7905 | 0.9496 | yes | no |
| Q3MFQ8 | ARGB_ANAVT | 2, ., 7, ., 2, ., 8 | 0.6382 | 0.7765 | 0.9360 | yes | no |
| Q7TUU2 | ARGB_PROMM | 2, ., 7, ., 2, ., 8 | 0.5811 | 0.8268 | 0.9610 | yes | no |
| B0CAM3 | ARGB_ACAM1 | 2, ., 7, ., 2, ., 8 | 0.6443 | 0.7821 | 0.9859 | yes | no |
| Q8YXG8 | ARGB_NOSS1 | 2, ., 7, ., 2, ., 8 | 0.6382 | 0.7765 | 0.9360 | yes | no |
| Q3AWR0 | ARGB_SYNS9 | 2, ., 7, ., 2, ., 8 | 0.6021 | 0.7793 | 0.9269 | yes | no |
| A2C0V9 | ARGB_PROM1 | 2, ., 7, ., 2, ., 8 | 0.5901 | 0.7793 | 0.9177 | yes | no |
| B0JHB1 | ARGB_MICAN | 2, ., 7, ., 2, ., 8 | 0.6607 | 0.7709 | 0.9355 | yes | no |
| B0KBW1 | ARGB_THEP3 | 2, ., 7, ., 2, ., 8 | 0.5357 | 0.7737 | 0.9264 | yes | no |
| Q3ALS4 | ARGB_SYNSC | 2, ., 7, ., 2, ., 8 | 0.6161 | 0.7793 | 0.9522 | yes | no |
| Q2RG64 | ARGB_MOOTA | 2, ., 7, ., 2, ., 8 | 0.5151 | 0.7932 | 0.9594 | yes | no |
| Q2JHF7 | ARGB_SYNJB | 2, ., 7, ., 2, ., 8 | 0.58 | 0.8156 | 0.9358 | yes | no |
| Q7TUD1 | ARGB_PROMP | 2, ., 7, ., 2, ., 8 | 0.5638 | 0.7765 | 0.9788 | yes | no |
| A8G3L5 | ARGB_PROM2 | 2, ., 7, ., 2, ., 8 | 0.55 | 0.7709 | 0.9752 | yes | no |
| B0TCA8 | ARGB_HELMI | 2, ., 7, ., 2, ., 8 | 0.5261 | 0.7653 | 0.9288 | yes | no |
| Q7U5C7 | ARGB_SYNPX | 2, ., 7, ., 2, ., 8 | 0.5985 | 0.7793 | 0.9522 | yes | no |
| Q5MZ48 | ARGB_SYNP6 | 2, ., 7, ., 2, ., 8 | 0.6560 | 0.7765 | 0.9235 | yes | no |
| Q2JXF5 | ARGB_SYNJA | 2, ., 7, ., 2, ., 8 | 0.6151 | 0.7653 | 0.9133 | yes | no |
| A5D506 | ARGB_PELTS | 2, ., 7, ., 2, ., 8 | 0.5423 | 0.7849 | 0.9525 | yes | no |
| A5GSD0 | ARGB_SYNR3 | 2, ., 7, ., 2, ., 8 | 0.5923 | 0.7905 | 0.9560 | yes | no |
| A2BPY1 | ARGB_PROMS | 2, ., 7, ., 2, ., 8 | 0.5464 | 0.7709 | 0.9752 | yes | no |
| P59303 | ARGB_THEEB | 2, ., 7, ., 2, ., 8 | 0.6418 | 0.7765 | 0.9423 | yes | no |
| Q8R7C0 | ARGB_THETN | 2, ., 7, ., 2, ., 8 | 0.5516 | 0.7765 | 0.9297 | yes | no |
| A5GJC5 | ARGB_SYNPW | 2, ., 7, ., 2, ., 8 | 0.6077 | 0.7793 | 0.9522 | yes | no |
| A4J169 | ARGB_DESRM | 2, ., 7, ., 2, ., 8 | 0.5156 | 0.7821 | 0.9756 | yes | no |
| A2C7M5 | ARGB_PROM3 | 2, ., 7, ., 2, ., 8 | 0.5779 | 0.8268 | 0.9610 | yes | no |
| Q46GS3 | ARGB_PROMT | 2, ., 7, ., 2, ., 8 | 0.5901 | 0.7793 | 0.9177 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.7.2.8 | 0.991 |
| 3rd Layer | 2.7.2 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 358 | |||
| PLN02512 | 309 | PLN02512, PLN02512, acetylglutamate kinase | 0.0 | |
| cd04250 | 279 | cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutam | 1e-159 | |
| PRK00942 | 283 | PRK00942, PRK00942, acetylglutamate kinase; Provis | 1e-153 | |
| cd04238 | 256 | cd04238, AAK_NAGK-like, AAK_NAGK-like: N-Acetyl-L- | 1e-133 | |
| CHL00202 | 284 | CHL00202, argB, acetylglutamate kinase; Provisiona | 1e-132 | |
| COG0548 | 265 | COG0548, ArgB, Acetylglutamate kinase [Amino acid | 1e-115 | |
| TIGR00761 | 231 | TIGR00761, argB, acetylglutamate kinase | 5e-92 | |
| PRK14058 | 268 | PRK14058, PRK14058, acetylglutamate/acetylaminoadi | 4e-53 | |
| cd04237 | 280 | cd04237, AAK_NAGS-ABP, AAK_NAGS-ABP: N-acetylgluta | 1e-45 | |
| cd04249 | 252 | cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glut | 2e-43 | |
| PRK05279 | 441 | PRK05279, PRK05279, N-acetylglutamate synthase; Va | 3e-42 | |
| cd04251 | 257 | cd04251, AAK_NAGK-UC, AAK_NAGK-UC: N-Acetyl-L-glut | 3e-41 | |
| cd04252 | 248 | cd04252, AAK_NAGK-fArgBP, AAK_NAGK-fArgBP: N-Acety | 2e-38 | |
| pfam00696 | 230 | pfam00696, AA_kinase, Amino acid kinase family | 6e-38 | |
| TIGR01890 | 429 | TIGR01890, N-Ac-Glu-synth, amino-acid N-acetyltran | 2e-32 | |
| cd02115 | 248 | cd02115, AAK, Amino Acid Kinases (AAK) superfamily | 4e-31 | |
| PRK04531 | 398 | PRK04531, PRK04531, acetylglutamate kinase; Provis | 6e-22 | |
| PLN02825 | 515 | PLN02825, PLN02825, amino-acid N-acetyltransferase | 1e-14 | |
| cd04241 | 252 | cd04241, AAK_FomA-like, AAK_FomA-like: This CD inc | 3e-12 | |
| cd04235 | 308 | cd04235, AAK_CK, AAK_CK: Carbamate kinase (CK) cat | 2e-07 | |
| cd04236 | 271 | cd04236, AAK_NAGS-Urea, AAK_NAGS-Urea: N-acetylglu | 5e-07 | |
| COG0549 | 312 | COG0549, ArcC, Carbamate kinase [Amino acid transp | 7e-07 | |
| PRK12353 | 314 | PRK12353, PRK12353, putative amino acid kinase; Re | 1e-06 | |
| COG1608 | 252 | COG1608, COG1608, Predicted archaeal kinase [Gener | 1e-06 | |
| PRK12354 | 307 | PRK12354, PRK12354, carbamate kinase; Reviewed | 8e-06 | |
| cd04242 | 251 | cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-k | 1e-05 | |
| cd04260 | 244 | cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A | 5e-05 | |
| TIGR00656 | 401 | TIGR00656, asp_kin_monofn, aspartate kinase, monof | 8e-05 | |
| PRK05429 | 372 | PRK05429, PRK05429, gamma-glutamyl kinase; Provisi | 1e-04 | |
| COG2054 | 212 | COG2054, COG2054, Uncharacterized archaeal kinase | 2e-04 | |
| PRK12454 | 313 | PRK12454, PRK12454, carbamate kinase-like carbamoy | 3e-04 | |
| cd04246 | 239 | cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino | 6e-04 | |
| TIGR00746 | 309 | TIGR00746, arcC, carbamate kinase | 6e-04 | |
| PRK12686 | 312 | PRK12686, PRK12686, carbamate kinase; Reviewed | 0.003 | |
| cd04240 | 203 | cd04240, AAK_UC, AAK_UC: Uncharacterized (UC) amin | 0.004 | |
| cd04256 | 284 | cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate | 0.004 |
| >gnl|CDD|178128 PLN02512, PLN02512, acetylglutamate kinase | Back alignment and domain information |
|---|
Score = 513 bits (1322), Expect = 0.0
Identities = 234/310 (75%), Positives = 262/310 (84%), Gaps = 4/310 (1%)
Query: 49 HRTEITKSSRSLTSAATAVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPN 108
R +T ++ S SAATA T RVDILSE+LPFIQ+FRGKT+VVKYGGAAMK
Sbjct: 4 FRAGLTIAATSSASAATAANAASTN-LSRVDILSEALPFIQRFRGKTVVVKYGGAAMK-- 60
Query: 109 QKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEI 168
L A V++DLVLLS VGLRPVLVHGGGPEIN WLK+ GIEP F++GLRVTDA TME+
Sbjct: 61 -DPELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKNGLRVTDAETMEV 119
Query: 169 VSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVI 228
V MVLVG+VNKSLVSLINKAG TAVGLSG DGRL ARPSPNS LGFVGEV RVDPTV+
Sbjct: 120 VEMVLVGKVNKSLVSLINKAGGTAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVL 179
Query: 229 EPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDP 288
PLV+ GHIPVIA+VAADE GQ+YNINADT AGE+AAALGAEKLILLTDVAG+LE+++DP
Sbjct: 180 RPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKDDP 239
Query: 289 MSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILT 348
SLVKE+DIKGV+K+I DGK+ GGMIPKV CC+RSLAQGV+TA IIDGRV HSLLLEILT
Sbjct: 240 GSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILT 299
Query: 349 DAGAGTMITG 358
D GAGTMITG
Sbjct: 300 DEGAGTMITG 309
|
Length = 309 |
| >gnl|CDD|239783 cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Score = 446 bits (1151), Expect = e-159
Identities = 170/282 (60%), Positives = 206/282 (73%), Gaps = 8/282 (2%)
Query: 80 ILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP 139
+L E+LP+IQKFRGKT+V+KYGG AMK + L S +D+VLL VG+ PV+VHGGGP
Sbjct: 1 VLIEALPYIQKFRGKTVVIKYGGNAMK---DEELKESFARDIVLLKYVGINPVVVHGGGP 57
Query: 140 EINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMD 199
EIN LK+ GIE F +GLRVTD TMEIV MVLVG+VNK +VSLIN+AG AVGLSG D
Sbjct: 58 EINEMLKKLGIESEFVNGLRVTDEETMEIVEMVLVGKVNKEIVSLINRAGGKAVGLSGKD 117
Query: 200 GRLFTARPSP-----NSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNI 254
G L A+ LGFVGEV V+P ++E L+ +G+IPVIA V E G++YNI
Sbjct: 118 GNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAPVGVGEDGETYNI 177
Query: 255 NADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMI 314
NADT AG +AAAL AEKLILLTDVAG+L++ DP SL+ EI +K +++I DG + GGMI
Sbjct: 178 NADTAAGAIAAALKAEKLILLTDVAGVLDDPNDPGSLISEISLKEAEELIADGIISGGMI 237
Query: 315 PKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
PKV CI +L GV+ A IIDGRV HSLLLEI TD G GTMI
Sbjct: 238 PKVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279
|
In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino Acid Kinase Superfamily (AAK). Length = 279 |
| >gnl|CDD|234869 PRK00942, PRK00942, acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Score = 432 bits (1114), Expect = e-153
Identities = 157/285 (55%), Positives = 204/285 (71%), Gaps = 6/285 (2%)
Query: 74 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVL 133
A + ++LSE+LP+IQ+F GKTIV+KYGG AM + L + +D+VLL VG+ PV+
Sbjct: 4 ALEKAEVLSEALPYIQRFMGKTIVIKYGGNAMT---DEELKEAFARDIVLLKQVGINPVV 60
Query: 134 VHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAV 193
VHGGGP+I+ LK+ GIE F +GLRVTDA TME+V MVL G+VNK LVSLINK G AV
Sbjct: 61 VHGGGPQIDELLKKLGIESEFVNGLRVTDAETMEVVEMVLAGKVNKELVSLINKHGGKAV 120
Query: 194 GLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYN 253
GLSG DG L TA+ + LGFVGEV V+P ++E L+ +G+IPVI+ + E G++YN
Sbjct: 121 GLSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPIGVGEDGETYN 180
Query: 254 INADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGM 313
INADT AG +AAALGAEKLILLTDV G+L+++ L+ E+ +++IEDG + GGM
Sbjct: 181 INADTAAGAIAAALGAEKLILLTDVPGVLDDKG---QLISELTASEAEELIEDGVITGGM 237
Query: 314 IPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
IPKV + + GVR+ IIDGRV H+LLLE+ TD G GTMI
Sbjct: 238 IPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP 282
|
Length = 283 |
| >gnl|CDD|239771 cd04238, AAK_NAGK-like, AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like | Back alignment and domain information |
|---|
Score = 381 bits (981), Expect = e-133
Identities = 154/262 (58%), Positives = 188/262 (71%), Gaps = 7/262 (2%)
Query: 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFR 155
+V+KYGG+AMK + L + D+VLL VG+ PV+VHGGGPEIN LKR GIE F
Sbjct: 1 VVIKYGGSAMK---DEELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFV 57
Query: 156 DGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSD-KL 214
+GLRVTD TMEIV MVL G+VNK LVSL+N+AG AVGLSG DG L A D L
Sbjct: 58 NGLRVTDKETMEIVEMVLAGKVNKELVSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDL 117
Query: 215 GFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLIL 274
GFVGEV V+P ++E L+ +G+IPVIA +A DE G++YN+NADT AG +AAAL AEKLIL
Sbjct: 118 GFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDGETYNVNADTAAGAIAAALKAEKLIL 177
Query: 275 LTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASII 334
LTDV G+L +DP SL+ E+ K +++IEDG + GGMIPKV + +L GVR II
Sbjct: 178 LTDVPGVL---DDPGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHII 234
Query: 335 DGRVEHSLLLEILTDAGAGTMI 356
DGRV HSLLLE+ TD G GTMI
Sbjct: 235 DGRVPHSLLLELFTDEGIGTMI 256
|
Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 256 |
| >gnl|CDD|133644 CHL00202, argB, acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Score = 379 bits (976), Expect = e-132
Identities = 168/280 (60%), Positives = 207/280 (73%), Gaps = 4/280 (1%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHG 136
RV +LSE+LP+IQKFRG+ +V+KYGGAAMK N L A ++KD++ LS +GL+ V+VHG
Sbjct: 7 RVQVLSEALPYIQKFRGRIMVIKYGGAAMK-NLI--LKADIIKDILFLSCIGLKIVVVHG 63
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GGPEINFWLK+ I P F +G+RVTD TMEIV MVL G+VNK LV IN G AVGL
Sbjct: 64 GGPEINFWLKQLNISPKFWNGIRVTDKVTMEIVEMVLAGKVNKDLVGSINANGGKAVGLC 123
Query: 197 GMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G D L AR S D LG VGE+ +VDP +I+ L+ +IPVIASVAAD GQ+YNINA
Sbjct: 124 GKDANLIVARASDKKD-LGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINA 182
Query: 257 DTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
D VAGE+AA L AEKLILLTD GIL + DP SL+ ++IK + + G + GGMIPK
Sbjct: 183 DVVAGEIAAKLNAEKLILLTDTPGILADINDPNSLISTLNIKEARNLASTGIISGGMIPK 242
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
VNCCIR+LAQGV A IIDG+ +H+LLLEILT+ G G+M+
Sbjct: 243 VNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSML 282
|
Length = 284 |
| >gnl|CDD|223622 COG0548, ArgB, Acetylglutamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 334 bits (860), Expect = e-115
Identities = 148/268 (55%), Positives = 193/268 (72%), Gaps = 6/268 (2%)
Query: 92 RGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIE 151
RGKTIV+K GG+AM+ +NLL + D+ LL VG+RPV+VHGGGP+I+ L + GIE
Sbjct: 1 RGKTIVIKLGGSAME---DENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIE 57
Query: 152 PVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNS 211
P F GLRVTDA T+E+V MVL G VNK +V+ ++K G AVGLSG+DG L TA+
Sbjct: 58 PEFVKGLRVTDAETLEVVEMVLGGTVNKEIVARLSKHGGQAVGLSGVDGNLVTAKKLDVD 117
Query: 212 DK--LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGA 269
D LG+VGE+ +V+P +IE L+++G IPVIA +A DE G++ N+NADT AG LAAAL A
Sbjct: 118 DGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDGETLNVNADTAAGALAAALKA 177
Query: 270 EKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVR 329
EKLILLTDV G+L+++ DP SL+ E+D + +++IE G + GGMIPKV + +L GVR
Sbjct: 178 EKLILLTDVPGVLDDKGDP-SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVR 236
Query: 330 TASIIDGRVEHSLLLEILTDAGAGTMIT 357
II GRV HSLLLE+ T G GTMI
Sbjct: 237 RVHIISGRVPHSLLLELFTRDGIGTMIV 264
|
Length = 265 |
| >gnl|CDD|233118 TIGR00761, argB, acetylglutamate kinase | Back alignment and domain information |
|---|
Score = 274 bits (703), Expect = 5e-92
Identities = 126/239 (52%), Positives = 172/239 (71%), Gaps = 8/239 (3%)
Query: 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVF 154
TIV+K GGAA+ +LL + D+ L VG++PV+VHGGGPEIN L+ GI P F
Sbjct: 1 TIVIKIGGAAI-----SDLLEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEF 55
Query: 155 RDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKL 214
++GLRVTD T+E+V MVL+G+VNK LV+L+NK G A+GL+G DG+LFTAR + + L
Sbjct: 56 KNGLRVTDKETLEVVEMVLIGQVNKELVALLNKHGINAIGLTGGDGQLFTAR-YLDKEDL 114
Query: 215 GFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLIL 274
G+VGE+ +V+ +IE L+ +G+IPVI+S+A GQ+ N+NADT AG LAAALGAEKL+L
Sbjct: 115 GYVGEIKKVNKALIEALLKAGYIPVISSLALTAEGQALNVNADTAAGALAAALGAEKLVL 174
Query: 275 LTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASI 333
LTDV GIL D SL+ EI + ++++I+ G + GGMIPKVN + +L GVR+ I
Sbjct: 175 LTDVPGILNG--DGQSLISEIPLDEIEQLIKQGIIKGGMIPKVNAALEALRGGVRSVHI 231
|
This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model [Amino acid biosynthesis, Glutamate family]. Length = 231 |
| >gnl|CDD|237599 PRK14058, PRK14058, acetylglutamate/acetylaminoadipate kinase; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 4e-53
Identities = 91/283 (32%), Positives = 138/283 (48%), Gaps = 37/283 (13%)
Query: 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVF 154
IVVK GG+ + D+ L G R VLVHGG E+N L+R GIEP F
Sbjct: 1 MIVVKIGGSVGIDP------EDALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRF 54
Query: 155 ---RDGL--RVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSP 209
G+ R TD T+E+ M + +NK LV + G AVGLSG+DG L
Sbjct: 55 VTSPSGVTSRYTDRETLEVFIMAM-ALINKQLVERLQSLGVNAVGLSGLDGGLLEG---K 110
Query: 210 NSDKL-------------GFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
+ + G++ V+ +++ L+ +G++PV+A A E G+ N++
Sbjct: 111 RKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDG 170
Query: 257 DTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
D A +A AL AE L+LL+DV G+L + D SL++ I + +++ + GGGM K
Sbjct: 171 DRAAAAIAGALKAEALVLLSDVPGLLRDPPDEGSLIERITPEEAEELSK--AAGGGMKKK 228
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDA--GAGTMIT 357
V ++ GV I D V+ + ++ A G GT+I
Sbjct: 229 VLMAAEAVEGGVGRVIIADANVD-----DPISAALAGEGTVIV 266
|
Length = 268 |
| >gnl|CDD|239770 cd04237, AAK_NAGS-ABP, AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts | Back alignment and domain information |
|---|
Score = 156 bits (398), Expect = 1e-45
Identities = 91/290 (31%), Positives = 142/290 (48%), Gaps = 23/290 (7%)
Query: 78 VDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG 137
VD E+ P+I RGKT V+ +GG A+ ++V D+ LL +G+R VLVHG
Sbjct: 3 VDWFREAAPYINAHRGKTFVIAFGGEAVAHPN----FDNIVHDIALLHSLGIRLVLVHGA 58
Query: 138 GPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSG 197
P+I+ L G+EP + GLR+TDA +E V G V + +L++ S
Sbjct: 59 RPQIDQRLAERGLEPRYHRGLRITDAAALECV-KEAAGAVRLEIEALLSMGLPN----SP 113
Query: 198 M--------DGRLFTARPSPNSD--KLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247
M G TARP D G GEV R+D I ++ G I +++ +
Sbjct: 114 MAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLLSPLGYSP 173
Query: 248 FGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIED- 306
G+ +N++ + VA +A AL A+KLI LTD G+L +D L++E+ + + ++E
Sbjct: 174 TGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLL---DDDGELIRELTAQEAEALLETG 230
Query: 307 GKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
+ + I + GV +I + +LLLE+ T G GT+I
Sbjct: 231 ALLTNDTARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280
|
Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 280 |
| >gnl|CDD|239782 cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-43
Identities = 82/241 (34%), Positives = 130/241 (53%), Gaps = 13/241 (5%)
Query: 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRP-VLVHGGGPEINFWLKRFGIEPVF 154
+V+K GGA ++ L S + + R V+VHGGG ++ LK+
Sbjct: 1 LVIKLGGALLETEAALEQLFSALSEYQQQHN---RQLVIVHGGGCVVDELLKKLNFPSEK 57
Query: 155 RDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKL 214
++GLRVT + ++ L G NK L++ KAG VGLS DG + +L
Sbjct: 58 KNGLRVTPKEQIPYITGALAGTANKQLMAQAIKAGLKPVGLSLADGGMTAVTQL--DPEL 115
Query: 215 GFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLIL 274
G VG+ DP+++ L+ +G +P+I+S+ AD+ GQ N+NAD A +A L A+ L+L
Sbjct: 116 GAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLMNVNADQAATAIAQLLNAD-LVL 174
Query: 275 LTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCI---RSLAQGVRTA 331
L+DV+G+L+ L+ E++ K ++IE G + GMI KVN + +SL +G+ A
Sbjct: 175 LSDVSGVLDAD---KQLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIA 231
Query: 332 S 332
S
Sbjct: 232 S 232
|
There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK). Length = 252 |
| >gnl|CDD|235386 PRK05279, PRK05279, N-acetylglutamate synthase; Validated | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 3e-42
Identities = 98/306 (32%), Positives = 149/306 (48%), Gaps = 36/306 (11%)
Query: 70 TQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGL 129
+ EF VD S P+I RGKT V+ GG A+ +++V D+ LL +G+
Sbjct: 3 KERSTEF-VDWFRHSAPYINAHRGKTFVIMLGGEAIA----HGNFSNIVHDIALLHSLGI 57
Query: 130 RPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSL-----VSL 184
R VLVHG P+I L GIEP + GLRVTDA +E V G + + + L
Sbjct: 58 RLVLVHGARPQIEEQLAARGIEPRYHKGLRVTDAAALECV-KQAAGELRLDIEARLSMGL 116
Query: 185 INK--AGATAVGLSGMDGRLFTARPSPNSDKLGFV--------GEVARVDPTVIEPLVNS 234
N AGA + + G TARP LG GEV R+D I ++S
Sbjct: 117 PNTPMAGAH---IRVVSGNFVTARP------LGVDDGVDYQHTGEVRRIDAEAIRRQLDS 167
Query: 235 GHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKE 294
G I +++ + G+S+N+ + VA ++A AL A+KLI T+ G+L+ + L++E
Sbjct: 168 GAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDEDGE---LIRE 224
Query: 295 IDIKGVKKMI---EDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAG 351
+ + ++ EDG G + +++ GVR + +I + +LL E+ T G
Sbjct: 225 LSPNEAQALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDG 284
Query: 352 AGTMIT 357
GTMI
Sbjct: 285 IGTMIV 290
|
Length = 441 |
| >gnl|CDD|239784 cd04251, AAK_NAGK-UC, AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC) | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 3e-41
Identities = 97/276 (35%), Positives = 152/276 (55%), Gaps = 34/276 (12%)
Query: 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVF- 154
IVVK GG+ + D ++ ++ G R ++VHGGG +N +LKR G+EP F
Sbjct: 1 IVVKIGGSVVSDL--DKVIDD-------IANFGERLIVVHGGGNYVNEYLKRLGVEPKFV 51
Query: 155 --RDGL--RVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTA----- 205
G+ R TD T+E+ MV+ G +NK +V+ ++ G AVGL+G+DGRL A
Sbjct: 52 TSPSGIRSRYTDKETLEVFVMVM-GLINKKIVARLHSLGVKAVGLTGLDGRLLEAKRKEI 110
Query: 206 -----RPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVA 260
R + G+ G+V +V+ +IE L+++G++PV++ VA E G+ N++ D A
Sbjct: 111 VRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDRAA 170
Query: 261 GELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCC 320
+AAAL AE+LILLTDV G+ + +++ I + + ++E K GGGM K+
Sbjct: 171 AAIAAALKAERLILLTDVEGLYLDG----RVIERITVSDAESLLE--KAGGGMKRKLLAA 224
Query: 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
++ GVR I D R + S + L G GT+I
Sbjct: 225 AEAVEGGVREVVIGDARAD-SPISSAL--NGGGTVI 257
|
This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK). Length = 257 |
| >gnl|CDD|239785 cd04252, AAK_NAGK-fArgBP, AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP) | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-38
Identities = 88/263 (33%), Positives = 136/263 (51%), Gaps = 19/263 (7%)
Query: 97 VVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD 156
V+K GGA ++ + D L AS L L VGL P++VHG GP++N L+ G+EP + D
Sbjct: 2 VIKVGGAIIE-DDLDELAAS----LSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVD 56
Query: 157 GLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGF 216
GLRVTD T+ + V + N LV + + GA A ++ +F A DK G
Sbjct: 57 GLRVTDPETLAVARKVFL-EENLKLVEALERNGARARPITS---GVFEAEYLD-KDKYGL 111
Query: 217 VGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLT 276
VG++ V+ IE + +G++P++ S+A GQ N+NAD AGELA L K++ L
Sbjct: 112 VGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLN 171
Query: 277 DVAGILENREDPMS---LVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASI 333
+ G+L+ +S L +E D +++ V G K+ L R++S+
Sbjct: 172 ETGGLLDGTGKKISAINLDEEYD-----DLMKQPWVKYGTKLKIKEIKELLDTLPRSSSV 226
Query: 334 IDGRVEHSLLLEILTDAGAGTMI 356
+ L E+ T +GAGT+I
Sbjct: 227 SITSPD-DLQKELFTHSGAGTLI 248
|
The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 248 |
| >gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 6e-38
Identities = 74/251 (29%), Positives = 119/251 (47%), Gaps = 30/251 (11%)
Query: 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153
K IV+K GG+++ + + + +++ L +G++ V+V GGG + L +GIE
Sbjct: 1 KRIVIKLGGSSLTDK---DEIKRLAEEIAKLLALGIKVVVVSGGGGFTDKLLAAYGIEAG 57
Query: 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDK 213
F +R T T ++ L +N+ +VSL + GA AV L DG L R
Sbjct: 58 F---VRHTAGATGLVLEAQLAAELNRIVVSLGERLGARAVALLLSDGGLPAVR------- 107
Query: 214 LGFVGEVARVDPTVIEPLVNSGHIPVIASVAA----DEFGQSYNINADTVAGELAAALGA 269
+ VD I+ L+ +G +PVI E ++DT+A LA ALGA
Sbjct: 108 ------LDLVDTEAIKELLEAGVVPVITGFGGENDTGETTTLGRGSSDTLAALLAEALGA 161
Query: 270 EKLILLTDVAGILENREDPMS-----LVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSL 324
+KLI+LTDV G+ DP L+ E+ ++++ G V GGM K +++
Sbjct: 162 DKLIILTDVDGVYTA--DPRKNPDAKLIPELSYDEAEELLAAGDVTGGMKVKHPAALKAA 219
Query: 325 AQGVRTASIID 335
+G II+
Sbjct: 220 RRGGIPVHIIN 230
|
This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230 |
| >gnl|CDD|233620 TIGR01890, N-Ac-Glu-synth, amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-32
Identities = 80/286 (27%), Positives = 135/286 (47%), Gaps = 15/286 (5%)
Query: 78 VDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG 137
V E+ P+I RGKT VV GG ++ L ++V D+ LL +G+R VLVHG
Sbjct: 2 VAWFREAAPYINAHRGKTFVVGLGGELVE----GGNLGNIVADIALLHSLGVRLVLVHGA 57
Query: 138 GPEINFWLKRFGIEPVFRDGLRVTDANTMEIV---SMVLVGRVNKSLVSLINKAGATAVG 194
P+I L G P + GLRVTD ++E + L + L ++
Sbjct: 58 RPQIERILAARGRTPHYHRGLRVTDEASLEQAQQAAGTLRLAIEARLSMSLSNTPMAGSR 117
Query: 195 LSGMDGRLFTARPSPNSDKLGF--VGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSY 252
L + G TARP + + + G + ++D I +++G I +++ + G+++
Sbjct: 118 LPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSIVLLSPLGHSPTGETF 177
Query: 253 NINADTVAGELAAALGAEKLILLTDVAGILENREDPM-SLVKEIDIKGVKKMIEDGKVGG 311
N++ + VA +A +L A+KLI T GI DP +L E+ + V+ + E
Sbjct: 178 NLDMEDVATSVAISLKADKLIYFTLSPGIS----DPDGTLAAELSPQEVESLAERLGSET 233
Query: 312 GMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357
++ +++ GV + I+ + SLL E+ T G GT I+
Sbjct: 234 TR-RLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSIS 278
|
This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate [Amino acid biosynthesis, Glutamate family]. Length = 429 |
| >gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 4e-31
Identities = 72/266 (27%), Positives = 124/266 (46%), Gaps = 24/266 (9%)
Query: 97 VVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD 156
V+K+GG+++ ++ L ++ + LV L+ G R V+VHG GP+I L G +
Sbjct: 1 VIKFGGSSVSSEER---LRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYAR 57
Query: 157 GLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGF 216
GLR+TD T + +M G N + + + + G AV L S G
Sbjct: 58 GLRITDRETDALAAMGE-GMSNLLIAAALEQHGIKAVPLDLTQAGFA-------SPNQGH 109
Query: 217 VGEVARVDPTVIEPLVNSGHIPVIASVAA---DEFGQSYNINADTVAGELAAALGAEKLI 273
VG++ +V ++ L+ +G +P+++ E G +D+ A LAAAL A++L+
Sbjct: 110 VGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLV 169
Query: 274 LLTDVAGILEN--REDPMS-LVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRT 330
+LTDV G+ R+ P + L+ E+ + ++ G M+ K A+
Sbjct: 170 ILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGA----MVLKPK-AADPAARAGIP 224
Query: 331 ASIIDGRVEHSLLLEILTDAGAGTMI 356
I + E+ L + T G GT+I
Sbjct: 225 VRIANT--ENPGALALFTPDGGGTLI 248
|
The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248 |
| >gnl|CDD|235306 PRK04531, PRK04531, acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 6e-22
Identities = 77/282 (27%), Positives = 116/282 (41%), Gaps = 62/282 (21%)
Query: 82 SESLPFIQKFRG----KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG 137
E ++++F + V+K GGA ++ + + L +S L L VGL P++VHG
Sbjct: 21 KEISQYLKRFSQLDAERFAVIKVGGAVLR-DDLEALASS----LSFLQEVGLTPIVVHGA 75
Query: 138 GPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSG 197
GP+++ L GIE +GLRVT + IV V R N LV
Sbjct: 76 GPQLDAELDAAGIEKETVNGLRVTSPEALAIVRKVFQ-RSNLDLVE-------------- 120
Query: 198 MDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINAD 257
+E + +G IPVIAS+ GQ NINAD
Sbjct: 121 -----------------------------AVESSLRAGSIPVIASLGETPSGQILNINAD 151
Query: 258 TVAGELAAALGAEKLILLTDVAGIL---ENREDPMSLVKEIDIKGVKKMIEDGKVGGGMI 314
A EL +AL K+I LT G+L ++L E D +++ + GGM
Sbjct: 152 VAANELVSALQPYKIIFLTGTGGLLDADGKLISSINLSTEYD-----HLMQQPWINGGMK 206
Query: 315 PKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
K+ L + +S+ L E+ T G+GT++
Sbjct: 207 LKLEQIKELLDRLPLESSVSITSPSD-LAKELFTHKGSGTLV 247
|
Length = 398 |
| >gnl|CDD|215441 PLN02825, PLN02825, amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 20/215 (9%)
Query: 78 VDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG 137
V E+ P+IQ RG T VV G + DN+L +D+ LL +G++ VLV G
Sbjct: 2 VRWFREAWPYIQGHRGSTFVVVISGEVVAGPHLDNIL----QDISLLHGLGIKFVLVPGT 57
Query: 138 GPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSL---------VSLINKA 188
+I+ L G EP + R+TD+ ++ SM G++ + + + +
Sbjct: 58 HVQIDKLLAERGREPKYVGAYRITDSAALQ-ASMEAAGKIRVMIEAKLSPGPSIPNLRRH 116
Query: 189 GATA----VGLSGMDGRLFTARPSP--NSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS 242
G + VG+S G A+ N G GEV ++D + I+ ++S I ++++
Sbjct: 117 GDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLDSNCIVLLSN 176
Query: 243 VAADEFGQSYNINADTVAGELAAALGAEKLILLTD 277
+ G+ N N VA A A+GA+KLI + D
Sbjct: 177 LGYSSSGEVLNCNTYEVATACALAIGADKLICIVD 211
|
Length = 515 |
| >gnl|CDD|239774 cd04241, AAK_FomA-like, AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 3e-12
Identities = 67/276 (24%), Positives = 115/276 (41%), Gaps = 38/276 (13%)
Query: 95 TIVVKYGGAA------MKPNQKDNL--LASVVKDLVLLSVVGLRPVLVHGGGPEINFWLK 146
I++K GG+ + +++NL +A + + + + VLVHGGG + K
Sbjct: 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI-----DEKLVLVHGGGSFGHPKAK 55
Query: 147 RFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR 206
+G+ DG A + ++ +N +V + +AG AV + +
Sbjct: 56 EYGL----PDGDGSFSAEGVAETHEAML-ELNSIVVDALLEAGVPAVSVPPSSFFVTEN- 109
Query: 207 PSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIA-SVAADEFGQSYNINADTVAGELAA 265
G + D VI+ L++ G +PV+ V DE G ++ D + ELA
Sbjct: 110 -----------GRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVELAK 158
Query: 266 ALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGK-----VGGGMIPKVNCC 320
AL E++I LTDV G+ + L+ EID+ ++ ++ V GGM K+
Sbjct: 159 ALKPERVIFLTDVDGVYDKPPPDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEEL 218
Query: 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
+ +G+ I +G L L GT I
Sbjct: 219 LELARRGIEV-YIFNGDK-PENLYRALLGNFIGTRI 252
|
Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 252 |
| >gnl|CDD|239768 cd04235, AAK_CK, AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-07
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 21/144 (14%)
Query: 227 VIEPLVNSGHIPVIAS------VAADEFGQSYNINA----DTVAGELAAALGAEKLILLT 276
I+ LV++G I VIA+ V + G + A D + LA + A+ L++LT
Sbjct: 173 AIKTLVDNGVI-VIAAGGGGIPVVREG-GGLKGVEAVIDKDLASALLAEEINADLLVILT 230
Query: 277 DVAGILEN--REDPMSLVKEIDIKGVKKMIEDGKVG-GGMIPKVNCCIRSLAQGVRTASI 333
DV + N + + +L +++ ++ ++K IE+G+ G M PKV IR + G + A I
Sbjct: 231 DVDNVYINFGKPNQKAL-EQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAII 289
Query: 334 IDGRVEHSLLLEILTDAGAGTMIT 357
+E+ L + AGT+I
Sbjct: 290 --TSLEN--AEAAL-EGKAGTVIV 308
|
Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK). Length = 308 |
| >gnl|CDD|239769 cd04236, AAK_NAGS-Urea, AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 5e-07
Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 8/153 (5%)
Query: 144 WLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRV----NKSLVSLINKAGATAVGLSGMD 199
+L+R ++ + GL D M + + K+LV + A A L +
Sbjct: 62 FLQRMDMKLLVVMGLSAPDGTNMSDLELQAARSRLVKDCKTLVEALQANSAAAHPLFSGE 121
Query: 200 GRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTV 259
L P P + K G VD +++ + SGHIP++ + G+S ++++ V
Sbjct: 122 SVLQAEEPEPGASK----GPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEV 177
Query: 260 AGELAAALGAEKLILLTDVAGILENREDPMSLV 292
+A AL K+I L G+ + + + V
Sbjct: 178 TTAIAKALQPIKVIFLNRSGGLRDQKHKVLPQV 210
|
Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF). Length = 271 |
| >gnl|CDD|223623 COG0549, ArcC, Carbamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 7e-07
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 19/143 (13%)
Query: 227 VIEPLVNSGHIPVIAS----VAADEFGQSYN-----INADTVAGELAAALGAEKLILLTD 277
I+ L+ SGH+ VIA+ + E G I+ D + LA + A+ LI+LTD
Sbjct: 176 AIKALLESGHV-VIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTD 234
Query: 278 VAGILEN--REDPMSLVKEIDIKGVKKMIEDGKVG-GGMIPKVNCCIRSLAQGVRTASII 334
V + N + + +L + + ++K + +G+ G M PKV I + + A I
Sbjct: 235 VDAVYVNFGKPNQQAL-DRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAII- 292
Query: 335 DGRVEHSLLLEILTDAGAGTMIT 357
+E+ L + AGT+I
Sbjct: 293 -TSLEN--AEAAL-EGKAGTVIV 311
|
Length = 312 |
| >gnl|CDD|237071 PRK12353, PRK12353, putative amino acid kinase; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 1e-06
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 28/148 (18%)
Query: 227 VIEPLVNSGHIPVIAS------VAADEFGQSYN-----INADTVAGELAAALGAEKLILL 275
I+ LV++G + VIA+ V + G I+ D + +LA + A+ LI+L
Sbjct: 177 AIKTLVDAGQV-VIAAGGGGIPVIRE--GGGLKGVEAVIDKDFASAKLAELVDADLLIIL 233
Query: 276 TDVAGILEN--REDPMSLVKEIDIKGVKKMIEDGKVGGG-MIPKVNCCIRSLAQGVRTAS 332
T V + N + + L E+ + +K IE+G+ G M+PKV I + +
Sbjct: 234 TAVDKVYINFGKPNQKKL-DEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKA 292
Query: 333 IIDGRVEHSLLLEILTDA---GAGTMIT 357
II LE +A AGT+I
Sbjct: 293 IIT-------SLEKAKEALEGKAGTVIV 313
|
Length = 314 |
| >gnl|CDD|224524 COG1608, COG1608, Predicted archaeal kinase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 52/241 (21%), Positives = 87/241 (36%), Gaps = 44/241 (18%)
Query: 132 VLVHGGGPEINFWLKRFGIE----PVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINK 187
++VHGGG + K FG+E + G +T M +N +V +
Sbjct: 42 IVVHGGGSFGHPAAKEFGLEGLKNYLSPLGFSLT-HLAML--------ELNSIVVDALLD 92
Query: 188 AGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS--VAA 245
AG AV F G + I+ + G +PV+ V
Sbjct: 93 AGVRAV-------------SVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPD 139
Query: 246 DEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIE 305
D+ G I+ D + LA L +++I LTDV G+ K D + + ++
Sbjct: 140 DDNGYEI-ISGDDIVLHLAKELKPDRVIFLTDVDGVY-----DRDPGKVPDARLLSEIEG 193
Query: 306 DGKVG--------GGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357
+G GG+ K+ + +A+ + I +G + + L GT I
Sbjct: 194 RVALGGSGGTDVTGGIAKKLE-ALLEIARYGKEVYIFNGNKPEN-IYRALRGENVGTRID 251
Query: 358 G 358
G
Sbjct: 252 G 252
|
Length = 252 |
| >gnl|CDD|183466 PRK12354, PRK12354, carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 8e-06
Identities = 42/142 (29%), Positives = 61/142 (42%), Gaps = 20/142 (14%)
Query: 227 VIEPLVNSGHIPVIAS------VAADEFGQSYNINA----DTVAGELAAALGAEKLILLT 276
I L+ GH+ VI + V D G+ + + A D A LA L A+ L++LT
Sbjct: 167 PIRWLLEKGHL-VICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILT 225
Query: 277 DVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDG 336
DV + + P + I ++ E G G M PKV + + A I G
Sbjct: 226 DVDAVYLDWGKPTQ--RAIAQATPDELRELGFAAGSMGPKVEAACEFVRATGKIAGI--G 281
Query: 337 RVEHSLLLEILTDAG-AGTMIT 357
+E + IL AG AGT I+
Sbjct: 282 SLED--IQAIL--AGEAGTRIS 299
|
Length = 307 |
| >gnl|CDD|239775 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 1e-05
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 22/144 (15%)
Query: 228 IEPLVNSGHIPVIA---SVAADE--FGQSYNINADTVAGELAAALGAEKLILLTDVAGIL 282
+E L+ G IP+I +VA +E FG N D ++ +A + A+ LILL+DV G+
Sbjct: 116 LETLLELGVIPIINENDTVATEEIRFGD----N-DRLSALVAGLVNADLLILLSDVDGLY 170
Query: 283 EN--REDP----MSLVKEIDIKGVKKMIEDGK--VG-GGMIPKVNCCIRSLAQGVRTASI 333
+ RE+P + V+EI ++ M VG GGM K+ + G+ I
Sbjct: 171 DKNPRENPDAKLIPEVEEIT-DEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVV-I 228
Query: 334 IDGRVEHSLLLEILTDAGAGTMIT 357
+GR LL+IL GT+
Sbjct: 229 ANGRKPDV-LLDILAGEAVGTLFL 251
|
G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requirement and the proline-triggered aggregation are greatly diminished and abolished, respectively, and more proline is needed for inhibition. Although plant and animal G5Ks are part of a bifunctional polypeptide, delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR; ProA); bacterial and yeast G5Ks are monofunctional single-polypeptide enzymes. In this CD, all three domain architectures are present: G5K, G5K+PUA, and G5K+G5PR. Length = 251 |
| >gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 167 EIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPT 226
EI+S V+ L S + G AV L+G + T N+ ++ +V+P
Sbjct: 77 EIISAVV-------LTSTLRAQGLKAVALTGAQAGILTDDNYSNA-------KIIKVNPK 122
Query: 227 VIEPLVNSGHIPVIASV-AADEFGQSYNIN---ADTVAGELAAALGAEKLILLTDVAGIL 282
I + G + V+A E G+ + +DT A L AAL AE + + TDV GI+
Sbjct: 123 KILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIM 182
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. Length = 244 |
| >gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 46/201 (22%), Positives = 74/201 (36%), Gaps = 33/201 (16%)
Query: 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153
+ IV K+GG ++ ++ A +V G + V+V + L +
Sbjct: 1 ELIVQKFGGTSVGSGERIKNAARIVLKEKKE---GHKVVVVVSAMSGVTDALVEISEK-A 56
Query: 154 FRDGLRVTDANTMEIVSMVLVGRVNKS--LVSLINKAGATAVGLSG------MDGRLFTA 205
RD +T E+VS G S + G A+ L G D A
Sbjct: 57 IRD--AITPRERDELVSH---GERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNA 111
Query: 206 RPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNIN---ADTVAG 261
+ + + PL+ G I V+A A E G + + +D A
Sbjct: 112 KID--------IIATEER----LLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAA 159
Query: 262 ELAAALGAEKLILLTDVAGIL 282
LAAAL A+++ + TDV G+
Sbjct: 160 LLAAALKADRVDIYTDVPGVY 180
|
This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401 |
| >gnl|CDD|235460 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 1e-04
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 22/132 (16%)
Query: 237 IPVIA---SVAADE--FGQSYNINADTVAGELAAALGAEKLILLTDVAGILE--NREDP- 288
+P+I +VA DE FG N DT++ +A + A+ LILLTDV G+ R++P
Sbjct: 134 VPIINENDTVATDEIKFGD----N-DTLSALVANLVEADLLILLTDVDGLYTADPRKNPD 188
Query: 289 ---MSLVKEIDIKGVKKMIED--GKVG-GGMIPKVNCCIRSLAQGVRTASIIDGRVEHSL 342
+ V+EI ++ M +G GGM K+ + G+ I GR
Sbjct: 189 AKLIPEVEEIT-DELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVV-IASGREPDV- 245
Query: 343 LLEILTDAGAGT 354
LL +L GT
Sbjct: 246 LLRLLAGEAVGT 257
|
Length = 372 |
| >gnl|CDD|224965 COG2054, COG2054, Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 221 ARVDPTVIEPL--VNSGHIPVIASV----AADEFGQSYNINADTVAGELAAALGAEKLIL 274
V TV EP + V+ D S+ + +D+++ +AA GA +++
Sbjct: 77 RFVTDTVTEPEDGIKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVK 136
Query: 275 LTDVAGILENREDPMSLVKEIDIKGVK 301
TDV GI E LV+EI +K
Sbjct: 137 ATDVDGIYEEDPKG-KLVREIRASDLK 162
|
Length = 212 |
| >gnl|CDD|183535 PRK12454, PRK12454, carbamate kinase-like carbamoyl phosphate synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 50/163 (30%), Positives = 69/163 (42%), Gaps = 27/163 (16%)
Query: 207 PSPNSDKLGFV-GEVAR--VDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA----DTV 259
PSP D LG V EV + V+ I G IPVI +E G+ + A D
Sbjct: 165 PSP--DPLGIVEIEVIKALVENGFIVIASGGGGIPVI-----EEDGELKGVEAVIDKDLA 217
Query: 260 AGELAAALGAEKLILLTDVAGILENREDPMSL-VKEIDIKGVKKMIEDGKV-GGGMIPKV 317
+ LA L A+ I+LTDV + N P + ++ ++ KK E+G G M PK+
Sbjct: 218 SELLAEELNADIFIILTDVEKVYLNYGKPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKI 277
Query: 318 NCCIRSLAQGVRTASIIDGRVEHSLLLEILTDA---GAGTMIT 357
IR + G + A I LE +A GT I
Sbjct: 278 LAAIRFVENGGKRAIIAS--------LEKAVEALEGKTGTRII 312
|
Length = 313 |
| >gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 30/125 (24%)
Query: 167 EIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPT 226
E +S L L +N+ G A+ L+G + T N+ + +DP
Sbjct: 72 EQISAAL-------LAMALNRLGIKAISLTGWQAGILTDDHHGNA-------RIIDIDPK 117
Query: 227 VIEPLVNSGHIPVIASVAADEFGQSYNINA----------DTVAGELAAALGAEKLILLT 276
I + G + V+A F Q N + DT A LAAAL A++ + T
Sbjct: 118 RILEALEEGDVVVVAG-----F-QGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYT 171
Query: 277 DVAGI 281
DV G+
Sbjct: 172 DVDGV 176
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains. Length = 239 |
| >gnl|CDD|233112 TIGR00746, arcC, carbamate kinase | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 6e-04
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 223 VDPTVIEPLVNSGHIPVIAS------VAADEFGQSYN---INADTVAGELAAALGAEKLI 273
V+ I+ LV +G I VI S V + I+ D + LA + A+ L+
Sbjct: 169 VEAETIKTLVENGVI-VICSGGGGVPVVREGAELKGVEAVIDKDLASELLAEEVNADILM 227
Query: 274 LLTDVAGILEN--REDPMSLVKEIDIKGVKKMIEDGKVG-GGMIPKVNCCIR 322
+LTDV + N + D L +E+ ++ ++ + G G M PKV I
Sbjct: 228 ILTDVDAVYINYGKPDEKKL-REVTVEELEDYEKAGHFAAGSMGPKVEAAIE 278
|
In most species, carbamate kinase works in arginine catabolism and consumes carbamoyl phosphate to convert ADP into ATP. In the pathway in Pyrococcus furiosus, the enzyme acts instead to generate carbamoyl phosphate.The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff [Energy metabolism, Amino acids and amines]. Length = 309 |
| >gnl|CDD|183683 PRK12686, PRK12686, carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 73/333 (21%), Positives = 118/333 (35%), Gaps = 91/333 (27%)
Query: 93 GKTIVVKYGGAAM------KPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPE------ 140
+ IV+ GG A+ Q+ + + LV L G V+ HG GP+
Sbjct: 2 KEKIVIALGGNAILQTEATAEAQQTAVR-EAAQHLVDLIEAGHDIVITHGNGPQVGNLLL 60
Query: 141 -------------------------INFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVG 175
I +WL+ + G+ D + +V+ V V
Sbjct: 61 QQAESNSNKVPAMPLDTCVAMSQGMIGYWLQNALNNELTERGI---DKPVITLVTQVEVD 117
Query: 176 RVNKSLVS----------------LINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGE 219
+ + + + + G+T +G R P P
Sbjct: 118 KDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRRVVPSPKP---------- 167
Query: 220 VARVDPTVIEPLVNSGHIPVIAS------VAADE---FGQSYNINADTVAGELAAALGAE 270
++ I LV+ G+I VIA V D+ G I+ D + +LA + A+
Sbjct: 168 QEIIEHDTIRTLVDGGNI-VIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDAD 226
Query: 271 KLILLTDVAGILEN--REDPMSLVKEIDIKGVKKMIEDGKVG-GGMIPKVNCCIRSLAQG 327
LI+LT V + N + + L +I + K+ I +G+ G M+PKV I + G
Sbjct: 227 LLIILTGVENVFINFNKPNQQKL-DDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESG 285
Query: 328 VRTASIIDGRVEHSLLLEILTDA---GAGTMIT 357
+II LE +A AGT IT
Sbjct: 286 EGKKAII-------TSLEQAKEALAGNAGTHIT 311
|
Length = 312 |
| >gnl|CDD|239773 cd04240, AAK_UC, AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 244 AADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVK 301
D S+ + +D++A LA LGA++L+++TDV GI E LV EI +
Sbjct: 104 DTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIY---EKDGKLVNEIAAAELL 158
|
Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily. Length = 203 |
| >gnl|CDD|239789 cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.004
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 257 DTVAGELAAALGAEKLILLTDVAGILENR-EDPMSLVKEIDIKGVKKMIEDG---KVG-G 311
D++A LA L A+ LILL+DV G+ + + + G ++ I G +VG G
Sbjct: 181 DSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTFYPGDQQSITFGTKSRVGTG 240
Query: 312 GMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357
GM KV + +L G I +G + +IL GT T
Sbjct: 241 GMEAKVKAALWALQGGTSVV-ITNGMAGDV-ITKILEGKKVGTFFT 284
|
G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Length = 284 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| COG0548 | 265 | ArgB Acetylglutamate kinase [Amino acid transport | 100.0 | |
| CHL00202 | 284 | argB acetylglutamate kinase; Provisional | 100.0 | |
| PLN02512 | 309 | acetylglutamate kinase | 100.0 | |
| cd04237 | 280 | AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) | 100.0 | |
| cd04250 | 279 | AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase | 100.0 | |
| PRK00942 | 283 | acetylglutamate kinase; Provisional | 100.0 | |
| TIGR01890 | 429 | N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi | 100.0 | |
| PLN02825 | 515 | amino-acid N-acetyltransferase | 100.0 | |
| PRK05279 | 441 | N-acetylglutamate synthase; Validated | 100.0 | |
| cd04252 | 248 | AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam | 100.0 | |
| cd04238 | 256 | AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate | 100.0 | |
| PRK14058 | 268 | acetylglutamate/acetylaminoadipate kinase; Provisi | 100.0 | |
| cd04236 | 271 | AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA | 100.0 | |
| cd04249 | 252 | AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina | 100.0 | |
| cd04251 | 257 | AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina | 100.0 | |
| TIGR00761 | 231 | argB acetylglutamate kinase. This model describes | 100.0 | |
| PRK04531 | 398 | acetylglutamate kinase; Provisional | 100.0 | |
| PRK12352 | 316 | putative carbamate kinase; Reviewed | 100.0 | |
| cd04241 | 252 | AAK_FomA-like AAK_FomA-like: This CD includes a fo | 100.0 | |
| cd02115 | 248 | AAK Amino Acid Kinases (AAK) superfamily, catalyti | 100.0 | |
| PF00696 | 242 | AA_kinase: Amino acid kinase family Match to Gluta | 100.0 | |
| KOG2436 | 520 | consensus Acetylglutamate kinase/acetylglutamate s | 100.0 | |
| cd04256 | 284 | AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase | 100.0 | |
| COG1608 | 252 | Predicted archaeal kinase [General function predic | 100.0 | |
| cd04242 | 251 | AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K | 100.0 | |
| PRK05429 | 372 | gamma-glutamyl kinase; Provisional | 100.0 | |
| PRK13402 | 368 | gamma-glutamyl kinase; Provisional | 100.0 | |
| COG0263 | 369 | ProB Glutamate 5-kinase [Amino acid transport and | 100.0 | |
| PRK12314 | 266 | gamma-glutamyl kinase; Provisional | 100.0 | |
| PTZ00489 | 264 | glutamate 5-kinase; Provisional | 100.0 | |
| PRK12686 | 312 | carbamate kinase; Reviewed | 100.0 | |
| PRK12353 | 314 | putative amino acid kinase; Reviewed | 100.0 | |
| cd04246 | 239 | AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina | 100.0 | |
| cd04261 | 239 | AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina | 100.0 | |
| TIGR01027 | 363 | proB glutamate 5-kinase. Bacterial ProB proteins h | 100.0 | |
| cd04260 | 244 | AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase | 100.0 | |
| TIGR00746 | 310 | arcC carbamate kinase. The seed alignment for this | 100.0 | |
| PRK12454 | 313 | carbamate kinase-like carbamoyl phosphate syntheta | 100.0 | |
| cd04235 | 308 | AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot | 99.97 | |
| PRK00358 | 231 | pyrH uridylate kinase; Provisional | 99.97 | |
| cd04234 | 227 | AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK) | 99.97 | |
| KOG1154 | 285 | consensus Gamma-glutamyl kinase [Amino acid transp | 99.97 | |
| PRK08210 | 403 | aspartate kinase I; Reviewed | 99.97 | |
| cd04255 | 262 | AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th | 99.97 | |
| PRK12354 | 307 | carbamate kinase; Reviewed | 99.97 | |
| cd04239 | 229 | AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik | 99.97 | |
| cd04254 | 231 | AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi | 99.97 | |
| TIGR01092 | 715 | P5CS delta l-pyrroline-5-carboxylate synthetase. T | 99.97 | |
| PRK06635 | 404 | aspartate kinase; Reviewed | 99.97 | |
| PRK08841 | 392 | aspartate kinase; Validated | 99.96 | |
| PRK14558 | 231 | pyrH uridylate kinase; Provisional | 99.96 | |
| TIGR00656 | 401 | asp_kin_monofn aspartate kinase, monofunctional cl | 99.96 | |
| PRK09411 | 297 | carbamate kinase; Reviewed | 99.96 | |
| PLN02418 | 718 | delta-1-pyrroline-5-carboxylate synthase | 99.96 | |
| cd04253 | 221 | AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP | 99.96 | |
| TIGR02075 | 233 | pyrH_bact uridylate kinase. This protein, also cal | 99.96 | |
| PRK07431 | 587 | aspartate kinase; Provisional | 99.96 | |
| TIGR02076 | 221 | pyrH_arch uridylate kinase, putative. This family | 99.95 | |
| TIGR00657 | 441 | asp_kinases aspartate kinase. The Lys-sensitive en | 99.94 | |
| COG0549 | 312 | ArcC Carbamate kinase [Amino acid transport and me | 99.94 | |
| PRK14556 | 249 | pyrH uridylate kinase; Provisional | 99.93 | |
| PRK14557 | 247 | pyrH uridylate kinase; Provisional | 99.93 | |
| cd04244 | 298 | AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina | 99.92 | |
| COG0528 | 238 | PyrH Uridylate kinase [Nucleotide transport and me | 99.91 | |
| cd04240 | 203 | AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin | 99.91 | |
| COG0527 | 447 | LysC Aspartokinases [Amino acid transport and meta | 99.9 | |
| PRK08373 | 341 | aspartate kinase; Validated | 99.89 | |
| PRK06291 | 465 | aspartate kinase; Provisional | 99.89 | |
| cd04259 | 295 | AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super | 99.88 | |
| cd04243 | 293 | AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina | 99.85 | |
| cd04257 | 294 | AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa | 99.84 | |
| cd04245 | 288 | AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki | 99.84 | |
| TIGR02078 | 327 | AspKin_pair Pyrococcus aspartate kinase subunit, p | 99.83 | |
| PRK09084 | 448 | aspartate kinase III; Validated | 99.8 | |
| PRK05925 | 440 | aspartate kinase; Provisional | 99.8 | |
| PRK09034 | 454 | aspartate kinase; Reviewed | 99.79 | |
| cd04258 | 292 | AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki | 99.79 | |
| PLN02551 | 521 | aspartokinase | 99.78 | |
| PRK08961 | 861 | bifunctional aspartate kinase/diaminopimelate deca | 99.77 | |
| cd04247 | 306 | AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa | 99.76 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 99.74 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 99.71 | |
| COG2054 | 212 | Uncharacterized archaeal kinase related to asparto | 99.57 | |
| PRK09181 | 475 | aspartate kinase; Validated | 99.52 | |
| cd04248 | 304 | AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S | 99.51 | |
| KOG0456 | 559 | consensus Aspartate kinase [Amino acid transport a | 99.11 | |
| COG5630 | 495 | ARG2 Acetylglutamate synthase [Amino acid transpor | 86.51 |
| >COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-64 Score=465.81 Aligned_cols=263 Identities=56% Similarity=0.910 Sum_probs=254.9
Q ss_pred cCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHH
Q 018330 92 RGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSM 171 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~ 171 (358)
++|++|||+||++|.+ ++++++++++|++|+..|.++||||||||+++.+++++|++++|++|+|+||+++|++++|
T Consensus 1 ~~k~~VIK~GG~~~~~---~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~m 77 (265)
T COG0548 1 RGKTIVIKLGGSAMED---ENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEM 77 (265)
T ss_pred CCceEEEEECceeecC---chHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHH
Confidence 5799999999999999 8888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCC--CCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCC
Q 018330 172 VLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPN--SDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFG 249 (358)
Q Consensus 172 vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~--~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G 249 (358)
++.|++|+.+++.|+++|..+++++|.|+++++|++... +.|+||+|+++++|++.|+.+|++|+|||++|++.|.+|
T Consensus 78 vl~G~vNk~iva~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G 157 (265)
T COG0548 78 VLGGTVNKEIVARLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDG 157 (265)
T ss_pred HHHHHHHHHHHHHHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCC
Confidence 999999999999999999999999999999999999763 357999999999999999999999999999999999999
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCC
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVR 329 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~ 329 (358)
+++|+|+|++|..+|.+|+|+||+|+|||+||+++.++| ++|++++.+|+++++.+++++|||+||+++|.+|++.|++
T Consensus 158 ~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~~-s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~ 236 (265)
T COG0548 158 ETLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGDP-SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVR 236 (265)
T ss_pred cEEeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCCc-eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999998888 9999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 330 TASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 330 ~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+|||+||+.+++|+.|+|+++++||+|.+
T Consensus 237 ~v~ii~g~~~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 237 RVHIISGRVPHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred eEEEecCCCcchHHHHHhcCCCcceEecC
Confidence 99999999999999999999999999974
|
|
| >CHL00202 argB acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-63 Score=471.89 Aligned_cols=280 Identities=59% Similarity=0.963 Sum_probs=267.2
Q ss_pred hhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcc
Q 018330 74 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153 (358)
Q Consensus 74 ~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~ 153 (358)
..+++++|||++|||++||++++|||+||+++.+ +.+...+++||+.|+..|.++|||||||++++.+++++|++++
T Consensus 4 ~~~~~~~~~~~~pyi~~~~~~~~VIk~gG~~~~~---~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~ 80 (284)
T CHL00202 4 NDERVQVLSEALPYIQKFRGRIMVIKYGGAAMKN---LILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPK 80 (284)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEEEChHHhcC---cchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCE
Confidence 3578999999999999999999999999999988 6666789999999999999999999999999999999999999
Q ss_pred ccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh
Q 018330 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN 233 (358)
Q Consensus 154 ~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~ 233 (358)
|.+|+|+|++++|++++|+++|++|+.+++.|+++|++++++++.|++++++++.. ..|++++|++++++.+.|+.+|+
T Consensus 81 ~~~G~rvT~~~~l~~~~~~l~g~ln~~lv~~L~~~Gv~av~l~~~d~~~i~a~~~~-~~d~~~~G~i~~v~~~~i~~ll~ 159 (284)
T CHL00202 81 FWNGIRVTDKVTMEIVEMVLAGKVNKDLVGSINANGGKAVGLCGKDANLIVARASD-KKDLGLVGEIQQVDPQLIDMLLE 159 (284)
T ss_pred eECCcccCCHHHHHHHHHHHhhHHHHHHHHHHHhCCCCeeeeeeccCCEEEEEeCC-CcccccceeEEecCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999854 46899999999999999999999
Q ss_pred CCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCc
Q 018330 234 SGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGM 313 (358)
Q Consensus 234 ~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM 313 (358)
+|.|||+++++.|.+|+.+|+|+|++|+.+|.+|+|++|+|+|||+|||+++.||+++|++++++|+++++..++++|||
T Consensus 160 ~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~~d~~~~i~~i~~~e~~~l~~~g~~tGGM 239 (284)
T CHL00202 160 KNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADINDPNSLISTLNIKEARNLASTGIISGGM 239 (284)
T ss_pred CCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCCCCCCCccccccHHHHHHHHhcCCCCCCH
Confidence 99999999999999999999999999999999999999999999999998766788999999999999998888999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 314 IPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 314 ~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+||++|.++++.|++++||+||+.|++|+.|+|++++.||+|.
T Consensus 240 ~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 240 IPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 99999999999999999999999999998899999999999985
|
|
| >PLN02512 acetylglutamate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-62 Score=468.66 Aligned_cols=283 Identities=80% Similarity=1.213 Sum_probs=268.9
Q ss_pred ChhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCc
Q 018330 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEP 152 (358)
Q Consensus 73 ~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~ 152 (358)
++..++++||+++|||++||++++||||||+++++ +++...++++|+.|+..|.++|||||||++++++++++|+++
T Consensus 27 ~~~~~~~~~r~~~pyi~~~~~~tiVIKlGGs~i~d---~~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~ 103 (309)
T PLN02512 27 TNLSRVDILSEALPFIQRFRGKTVVVKYGGAAMKD---PELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEP 103 (309)
T ss_pred chHHHHHHHHHHhHHHHHHCCCeEEEEECCeeccC---hhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCC
Confidence 56799999999999999999999999999999999 555567999999888999999999999999999999999999
Q ss_pred cccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHH
Q 018330 153 VFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLV 232 (358)
Q Consensus 153 ~~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL 232 (358)
+|.+|+|+|+.+++++++|+++|++|+.+++.|+++|+++++++|.|++++++++.....|++++|+++.++.+.|+.+|
T Consensus 104 ~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~~L~~~Gv~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~~~i~~lL 183 (309)
T PLN02512 104 QFKNGLRVTDAETMEVVEMVLVGKVNKSLVSLINKAGGTAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVLRPLV 183 (309)
T ss_pred cCCCCCcCCCHHHHHHHHHHHhhHHHHHHHHHHHHcCCCeEEeehhhCCEEEEEEcCcCccccccceeeecCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987645689999999999999999999
Q ss_pred hCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCC
Q 018330 233 NSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGG 312 (358)
Q Consensus 233 ~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGG 312 (358)
+.|.|||++|++.|+.|+.+++|+|++|+++|.+|+|++|+|+|||+|||+++++++++|++|+++|+++++..++++||
T Consensus 184 ~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~~~~~lI~~i~~~e~~~l~~~~~vtGG 263 (309)
T PLN02512 184 DDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKDDPGSLVKELDIKGVRKLIADGKIAGG 263 (309)
T ss_pred hCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCCCCcCCCcccCHHHHHHHHhCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999876567789999999999999888899999
Q ss_pred cHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 313 MIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 313 M~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
|.+||++|.++++.|++++||+||+.|++|+.++|++++.||+|.|
T Consensus 264 M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~ 309 (309)
T PLN02512 264 MIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMITG 309 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEeC
Confidence 9999999999999999989999999999998999999999999986
|
|
| >cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-57 Score=431.64 Aligned_cols=272 Identities=33% Similarity=0.572 Sum_probs=254.6
Q ss_pred hhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcccc
Q 018330 76 FRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFR 155 (358)
Q Consensus 76 ~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~ 155 (358)
+|++|||+++||+++||++++|||+||+++.+ +++ .+++++|+.|++.|+++|||||||+++++++.++|++++|.
T Consensus 1 ~~~~~~~~~~~yi~~~~~~~~VIKlGG~ai~~---~~l-~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~ 76 (280)
T cd04237 1 QFVDWFREAAPYINAHRGKTFVIAFGGEAVAH---PNF-DNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYH 76 (280)
T ss_pred ChHHHHHHHhHHHHHhCCCEEEEEEChHHhcC---chH-HHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcccc
Confidence 58999999999999999999999999999998 655 68999999999999999999999999999999999999999
Q ss_pred CCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeE-----eecCCCccEEEeecCC--CCCCCCcccceeecCHHHH
Q 018330 156 DGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAV-----GLSGMDGRLFTARPSP--NSDKLGFVGEVARVDPTVI 228 (358)
Q Consensus 156 ~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av-----~lsg~d~~ll~a~~~~--~~~d~g~~g~v~~i~~~~I 228 (358)
+|+|+|++++|++++|++ |++|..+++.|++ |++++ ++++.+++++.++|.+ ++.||+++|+++.++.+.|
T Consensus 77 ~G~RvT~~~~l~~~~~~~-g~v~~~l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i 154 (280)
T cd04237 77 RGLRITDAAALECVKEAA-GAVRLEIEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAI 154 (280)
T ss_pred CCcCcCCHHHHHHHHHHH-HHHHHHHHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHH
Confidence 999999999999999995 9999999999965 88887 4566688888998864 2468999999999999999
Q ss_pred HHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCC
Q 018330 229 EPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGK 308 (358)
Q Consensus 229 ~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~ 308 (358)
+++|++|+|||+++++.+.+|+.+|+|+|.+|+.||.+|+|++|+|+|||||||++ ++++|++++.+|+++++..+.
T Consensus 155 ~~lL~~g~ipv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~---~~~~i~~i~~~e~~~l~~~~~ 231 (280)
T cd04237 155 RRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD---DGELIRELTAQEAEALLETGA 231 (280)
T ss_pred HHHHHCCCEEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC---CCCccccCCHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999974 478999999999999998877
Q ss_pred C-CCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 309 V-GGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 309 v-tGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
+ +|||++||++|.++++.|++++||+||+.||+|+.|+|+++|.||+|
T Consensus 232 ~~~ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 232 LLTNDTARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 6 99999999999999999999999999999999999999999999986
|
Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). |
| >cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-57 Score=429.00 Aligned_cols=274 Identities=62% Similarity=0.985 Sum_probs=259.2
Q ss_pred HHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcc
Q 018330 80 ILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLR 159 (358)
Q Consensus 80 ~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~r 159 (358)
+||+|.|||++||++++||||||+++++ +.....++++|+.++..|.++|||||||++++.++++++++.++.+|+|
T Consensus 1 ~~~~~~~yi~~~~~~~~ViKlGGs~i~~---~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r 77 (279)
T cd04250 1 VLIEALPYIQKFRGKTVVIKYGGNAMKD---EELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLR 77 (279)
T ss_pred ChhhhhHHHHHHcCCEEEEEEChHHhcC---ccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCee
Confidence 3899999999999999999999999999 4445678999998988999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCC-----CCCCCCcccceeecCHHHHHHHHhC
Q 018330 160 VTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSP-----NSDKLGFVGEVARVDPTVIEPLVNS 234 (358)
Q Consensus 160 vt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~-----~~~d~g~~g~v~~i~~~~I~~lL~~ 234 (358)
+|++++++++.+++.|++|..+++.|+++|++++++++.|++++++++.+ +..||+++|+++.++.+.|+.+|++
T Consensus 78 ~t~~~~~~~~~~~~~g~ln~~l~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~ 157 (279)
T cd04250 78 VTDEETMEIVEMVLVGKVNKEIVSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEA 157 (279)
T ss_pred cCCHHHHHHHHHHHcCchHHHHHHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHC
Confidence 99999999999998799999999999999999999999999999999875 2468999999999999999999999
Q ss_pred CCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcH
Q 018330 235 GHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMI 314 (358)
Q Consensus 235 G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~ 314 (358)
|.|||+++++.++.|+.+++|+|.+|+++|.+|+|++|+|+|||||||+++|||+++|++++++|++++...++++|||.
T Consensus 158 g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~~~~~tGgm~ 237 (279)
T cd04250 158 GYIPVIAPVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPNDPGSLISEISLKEAEELIADGIISGGMI 237 (279)
T ss_pred CCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCCCccccccCCHHHHHHHHHcCCCCCchH
Confidence 99999999988989999999999999999999999999999999999999878889999999999999988889999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 315 PKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 315 ~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
+|+++|.+++++|+.+|+|+||+.|++|+.++|++++.||+|
T Consensus 238 ~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 238 PKVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 999999999999999999999999999999999999999986
|
In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A |
| >PRK00942 acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=427.95 Aligned_cols=279 Identities=56% Similarity=0.916 Sum_probs=264.0
Q ss_pred hhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcc
Q 018330 74 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153 (358)
Q Consensus 74 ~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~ 153 (358)
...++.+||++.|||++||++++||||||+++++ ++....++++|+.|++.|.++|||||||++++.+++++++.+.
T Consensus 4 ~~~~~~~~r~~~~yi~~~~~~~iViK~GGs~l~~---~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~ 80 (283)
T PRK00942 4 ALEKAEVLSEALPYIQRFMGKTIVIKYGGNAMTD---EELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESE 80 (283)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEEEChHHhcC---cchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcE
Confidence 4588999999999999999999999999999999 4445778999999999999999999999999999999999999
Q ss_pred ccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh
Q 018330 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN 233 (358)
Q Consensus 154 ~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~ 233 (358)
+.+|+|+|+.++++++.++++|++|..+++.|+++|++++++++.|++++++++..++.||+++|+++.++.+.|+.+|+
T Consensus 81 ~~~g~~~t~~~~l~~~~~a~~G~l~~~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~ 160 (283)
T PRK00942 81 FVNGLRVTDAETMEVVEMVLAGKVNKELVSLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLE 160 (283)
T ss_pred eeCCEecCCHHHHHHHHHHHcCchHHHHHHHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHH
Confidence 99999999999999999988899999999999999999999999999999999986678999999999999999999999
Q ss_pred CCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCc
Q 018330 234 SGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGM 313 (358)
Q Consensus 234 ~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM 313 (358)
+|.|||+++++++.+|+.+++|+|++|+.+|.+|+|++|+|+|||||||++ ++++|++|+++|++++...++++|||
T Consensus 161 ~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~---~~~~i~~i~~~e~~~~~~~~~~tggm 237 (283)
T PRK00942 161 AGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD---KGQLISELTASEAEELIEDGVITGGM 237 (283)
T ss_pred CCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC---CCcccccCCHHHHHHHHHcCCCCCch
Confidence 999999999999999999999999999999999999999999999999986 47899999999999998888999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 314 IPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 314 ~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+|+++|.++++.|+.+|+|+||+.|++|+.++|+++++||+|.+
T Consensus 238 ~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~ 282 (283)
T PRK00942 238 IPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP 282 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence 999999999999999899999999999988999999999999975
|
|
| >TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=450.39 Aligned_cols=271 Identities=29% Similarity=0.477 Sum_probs=252.0
Q ss_pred hHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccC
Q 018330 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD 156 (358)
Q Consensus 77 ~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~ 156 (358)
|+++|+||+|||++|+|+++|||+||+++++ +.+ .+++++|+.|+..|.++|||||||++++.+++++|++++|.+
T Consensus 1 ~~~~~~~~~~~i~~~~~~~~ViK~GG~~~~~---~~~-~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~ 76 (429)
T TIGR01890 1 FVAWFREAAPYINAHRGKTFVVGLGGELVEG---GNL-GNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHR 76 (429)
T ss_pred ChhHHhhhhHHHHHhCCCEEEEEEChhhccC---ccH-HHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeC
Confidence 5789999999999999999999999999988 444 689999999999999999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeE-----eecCCCccEEEeecCC--CCCCCCcccceeecCHHHHH
Q 018330 157 GLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAV-----GLSGMDGRLFTARPSP--NSDKLGFVGEVARVDPTVIE 229 (358)
Q Consensus 157 g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av-----~lsg~d~~ll~a~~~~--~~~d~g~~g~v~~i~~~~I~ 229 (358)
|+|+|++++|++++|+ +|++|+.+++.|+++ ++++ ++++.|++++.+++.. ++.|+|++|+|++++.+.|+
T Consensus 77 G~RvT~~~~l~~~~~~-~g~vn~~l~~~l~~~-~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~ 154 (429)
T TIGR01890 77 GLRVTDEASLEQAQQA-AGTLRLAIEARLSMS-LSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIR 154 (429)
T ss_pred CcccCCHHHHHHHHHH-hChHHHHHHHHHHhc-CCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHH
Confidence 9999999999999998 999999999999887 4443 4888899999999864 35699999999999999999
Q ss_pred HHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCC
Q 018330 230 PLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKV 309 (358)
Q Consensus 230 ~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~v 309 (358)
.+|+.|+|||++|++++.+|+.+|+|+|.+|+.||.+|+|+||+|+|||||||++ ++++|++|+.+|++++++. +
T Consensus 155 ~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~---~g~~i~~i~~~~~~~l~~~--~ 229 (429)
T TIGR01890 155 RQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDP---DGTLAAELSPQEVESLAER--L 229 (429)
T ss_pred HHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC---CCCCcccCCHHHHHHHHHh--c
Confidence 9999999999999999999999999999999999999999999999999999974 5789999999999999875 4
Q ss_pred CCC-cHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 310 GGG-MIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 310 tGG-M~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.|| |.+|+++|.++++.|++++||+||+.||+|+.|+|+++|.||+|.+
T Consensus 230 ~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~ 279 (429)
T TIGR01890 230 GSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISK 279 (429)
T ss_pred cCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEec
Confidence 456 4999999999999999999999999999999999999999999964
|
This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate. |
| >PLN02825 amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-56 Score=450.26 Aligned_cols=273 Identities=29% Similarity=0.460 Sum_probs=249.8
Q ss_pred hHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccC
Q 018330 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD 156 (358)
Q Consensus 77 ~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~ 156 (358)
+|+|||||+|||++||||++|||+||+++.+ +. +.+++.||++|+..|+++|||||||++++.++++.|++++|++
T Consensus 1 ~v~~fr~a~pYI~~~rgktfVIk~gG~~l~~---~~-~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~ 76 (515)
T PLN02825 1 FVRWFREAWPYIQGHRGSTFVVVISGEVVAG---PH-LDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVG 76 (515)
T ss_pred ChhHHHhhhHHHHHHCCCEEEEEECchhhcC---ch-HHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeC
Confidence 5899999999999999999999999999998 64 4889999999999999999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHHHhhhhHHHHHHHH---------HHcCCee----EeecCCCccEEEeecCC--CCCCCCccccee
Q 018330 157 GLRVTDANTMEIVSMVLVGRVNKSLVSLI---------NKAGATA----VGLSGMDGRLFTARPSP--NSDKLGFVGEVA 221 (358)
Q Consensus 157 g~rvt~~~~~~~v~~vl~g~ln~~lv~~L---------~~~Gi~a----v~lsg~d~~ll~a~~~~--~~~d~g~~g~v~ 221 (358)
|+|+||+++|+++ ++++|++|..+++.| +++|+++ +++++.|+++++++|.+ +++||||+|+|+
T Consensus 77 G~RVTd~~~L~~~-~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~ 155 (515)
T PLN02825 77 AYRITDSAALQAS-MEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVK 155 (515)
T ss_pred CcccCCHHHHHHH-HHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEE
Confidence 9999999999996 677999999999865 8999998 99999999999999975 357999999999
Q ss_pred ecCHHHHHHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHH
Q 018330 222 RVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVK 301 (358)
Q Consensus 222 ~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~ 301 (358)
+||.+.|+.+|++|.|||++|++++.+|+++|+|+|.+|+.+|.+|+|+||||+||++ ++++ ++++|++++.+|++
T Consensus 156 ~Vd~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~-~~~~---~g~li~~l~~~e~~ 231 (515)
T PLN02825 156 KIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGP-ILDE---NGRLIRFMTLEEAD 231 (515)
T ss_pred EEcHHHHHHHHhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcc-eecC---CCCCcCcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999977 5543 47899999999999
Q ss_pred HHHhCC-------------------------C------------------------------------------------
Q 018330 302 KMIEDG-------------------------K------------------------------------------------ 308 (358)
Q Consensus 302 ~l~~~~-------------------------~------------------------------------------------ 308 (358)
++++++ .
T Consensus 232 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (515)
T PLN02825 232 MLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDSVNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEE 311 (515)
T ss_pred HHHHhhhhcchhhhhhhhhccccccccccccccccccccccccccccccccccccccccccccCcccccccccccccchh
Confidence 987531 0
Q ss_pred ---CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 309 ---VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 309 ---vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
-+.+...|+.+|..+++.||+|+|++|++.+++||.|||+.+|+||+|..
T Consensus 312 ~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~ 364 (515)
T PLN02825 312 RLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIAS 364 (515)
T ss_pred hchhhhhHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEecc
Confidence 01223456999999999999999999999999999999999999999963
|
|
| >PRK05279 N-acetylglutamate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=437.07 Aligned_cols=277 Identities=33% Similarity=0.545 Sum_probs=257.4
Q ss_pred ChhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCc
Q 018330 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEP 152 (358)
Q Consensus 73 ~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~ 152 (358)
...+++++|++++|||++||++++|||+||++|++ +++ .+++++|+.|+..|+++|||||||++++.++.++|+++
T Consensus 5 ~~~~~~~~~~~~~~~i~~~~~~~~VIk~GG~~l~~---~~~-~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~ 80 (441)
T PRK05279 5 RSTEFVDWFRHSAPYINAHRGKTFVIMLGGEAIAH---GNF-SNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEP 80 (441)
T ss_pred chhHHHHHHHHHhHHHHHhCCCEEEEEECchhccC---hhH-HHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCc
Confidence 34679999999999999999999999999999988 555 58999999999999999999999999999999999999
Q ss_pred cccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEe-----ecCCCccEEEeecCC--CCCCCCcccceeecCH
Q 018330 153 VFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVG-----LSGMDGRLFTARPSP--NSDKLGFVGEVARVDP 225 (358)
Q Consensus 153 ~~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~-----lsg~d~~ll~a~~~~--~~~d~g~~g~v~~i~~ 225 (358)
+|.+|+|+|++++++++.|++ |++|..++++|++ |+++++ +++.|++++.++|.+ ++.|+|++|+++.++.
T Consensus 81 ~~~~G~RvT~~~~l~~~~~~~-g~v~~~l~~~l~~-g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~ 158 (441)
T PRK05279 81 RYHKGLRVTDAAALECVKQAA-GELRLDIEARLSM-GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDA 158 (441)
T ss_pred eecCCcccCCHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeH
Confidence 999999999999999999995 8999999999955 998877 566688889999874 2468999999999999
Q ss_pred HHHHHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHh
Q 018330 226 TVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIE 305 (358)
Q Consensus 226 ~~I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~ 305 (358)
+.|+.+|++|+|||+++++.|.+|+.+|+|+|.+|+.||.+|+|++|+|+|||||||++ ++++|++++.+|+++++.
T Consensus 159 ~~i~~ll~~g~ipV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~---~~~~i~~i~~~~~~~~~~ 235 (441)
T PRK05279 159 EAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE---DGELIRELSPNEAQALLE 235 (441)
T ss_pred HHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC---CCchhhhCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999964 478999999999999987
Q ss_pred ---CCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 306 ---DGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 306 ---~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.++++|||.+||++|++++++|++++||+||+.|++|+.|+|+.+|.||+|++
T Consensus 236 ~~~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~ 291 (441)
T PRK05279 236 ALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVM 291 (441)
T ss_pred hhhcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEec
Confidence 78899999999999999999999999999999999999999998999999974
|
|
| >cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=373.46 Aligned_cols=244 Identities=34% Similarity=0.545 Sum_probs=225.8
Q ss_pred EEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHHhhh
Q 018330 97 VVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGR 176 (358)
Q Consensus 97 VIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl~g~ 176 (358)
|||+||+++++ . +.+++++|+.|+..|.++|||||||++++++++++|++++|.+|+|+|++++++.+++++ ++
T Consensus 2 ViKiGG~~~~~---~--l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al-~~ 75 (248)
T cd04252 2 VIKVGGAIIED---D--LDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVF-LE 75 (248)
T ss_pred EEEEChhhhhc---c--HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHH-HH
Confidence 89999999988 4 478999999999999999999999999999999999999999999999999999999997 49
Q ss_pred hHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCccccCh
Q 018330 177 VNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256 (358)
Q Consensus 177 ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i~s 256 (358)
+|..+++.|+++|++++++++ .++.+++.. +.||||+|++++++.+.|+.+|+.|+|||++|++++.+|+.+|+|+
T Consensus 76 vn~~iv~~l~~~g~~a~~l~~---~~~~a~~~~-~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvna 151 (248)
T cd04252 76 ENLKLVEALERNGARARPITS---GVFEAEYLD-KDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNA 151 (248)
T ss_pred HHHHHHHHHHhCCCCcccccC---ceEEEEECc-CccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECH
Confidence 999999999999999999985 366777754 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccH-HHHHHHHhCCCCCCCcHHHHHHHHHHHHc--CCCEEEE
Q 018330 257 DTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDI-KGVKKMIEDGKVGGGMIPKVNCCIRSLAQ--GVRTASI 333 (358)
Q Consensus 257 D~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~-~e~~~l~~~~~vtGGM~~Kv~aA~~al~~--Gv~~v~I 333 (358)
|.+|+.+|.+|+|+||+|+|||||||++ ++++|++++. +++++++..+++||||++||++|.++++. ++..++|
T Consensus 152 D~~A~~lA~aL~a~kli~ltdv~GV~~~---~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i 228 (248)
T cd04252 152 DVAAGELARVLEPLKIVFLNETGGLLDG---TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSI 228 (248)
T ss_pred HHHHHHHHHHcCCCeEEEEECCcccCCC---CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEE
Confidence 9999999999999999999999999975 4789999997 57888888889999999999998888877 6677999
Q ss_pred EeCCCcchHHHHHHcCCCCceEE
Q 018330 334 IDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 334 i~G~~~~~Ll~el~~~~g~GT~I 356 (358)
++ +++|+.|+|+++|+||+|
T Consensus 229 ~~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 229 TS---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred EC---CchHHHHHhcCCCCCccC
Confidence 88 689999999999999986
|
The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th |
| >cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-49 Score=369.91 Aligned_cols=255 Identities=60% Similarity=0.950 Sum_probs=237.9
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHHhh
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVG 175 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl~g 175 (358)
+||||||+++++ ++....++++|+.|+..|.++|||||+|+++|.+++++++..++.+|+|+|++++++.+.+++.+
T Consensus 1 ~ViKlGGs~l~~---~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g 77 (256)
T cd04238 1 VVIKYGGSAMKD---EELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAG 77 (256)
T ss_pred CEEEEChHHhcC---ccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcC
Confidence 589999999999 54457899999999999999999999999999999999999889999999999999999998768
Q ss_pred hhHHHHHHHHHHcCCeeEeecCCCccEEEeecCC-CCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCcccc
Q 018330 176 RVNKSLVSLINKAGATAVGLSGMDGRLFTARPSP-NSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNI 254 (358)
Q Consensus 176 ~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~-~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i 254 (358)
++|..+++.|+++|++++++++.+++++++++.+ +..||+|+|+++.++.+.|+.+|++|.|||+++++.+.+|+.+++
T Consensus 78 ~ln~~i~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~~~~~~g~~~~~ 157 (256)
T cd04238 78 KVNKELVSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDGETYNV 157 (256)
T ss_pred chHHHHHHHHHhCCCCCCCcccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCcEECCCCcEEEE
Confidence 9999999999999999999999999999998863 246899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEE
Q 018330 255 NADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASII 334 (358)
Q Consensus 255 ~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii 334 (358)
|+|++|+++|.+|+|++|+|+|||+|||++ |+++|++++++|+.+++..++++|||.+|+++|.++++.|+.+++|+
T Consensus 158 ~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~---~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~ 234 (256)
T cd04238 158 NADTAAGAIAAALKAEKLILLTDVPGVLDD---PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHII 234 (256)
T ss_pred CHHHHHHHHHHHcCCCEEEEEeCCccccCC---CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEe
Confidence 999999999999999999999999999986 57899999999999998878899999999999999999999889999
Q ss_pred eCCCcchHHHHHHcCCCCceEE
Q 018330 335 DGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 335 ~G~~~~~Ll~el~~~~g~GT~I 356 (358)
||+.|++|+.+++.+++.||+|
T Consensus 235 ~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 235 DGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred CCCCCcHHHHHHhcCCCCCCCC
Confidence 9999999988887667899986
|
Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). |
| >PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=370.21 Aligned_cols=252 Identities=36% Similarity=0.567 Sum_probs=229.5
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccC---C--cccCCHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD---G--LRVTDANTMEIV 169 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~---g--~rvt~~~~~~~v 169 (358)
++||||||+++.+ + ..++++|+.++..|.++|||||||+++|++++++|++++|.+ | +|+|++++|+.+
T Consensus 1 ~~ViK~GG~~l~~---~---~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~ 74 (268)
T PRK14058 1 MIVVKIGGSVGID---P---EDALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVF 74 (268)
T ss_pred CEEEEEChHHhhC---c---HHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHH
Confidence 4899999999998 3 357999999999999999999999999999999999999987 6 899999999999
Q ss_pred HHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCC------C----CCCCCcccceeecCHHHHHHHHhCCCeEE
Q 018330 170 SMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSP------N----SDKLGFVGEVARVDPTVIEPLVNSGHIPV 239 (358)
Q Consensus 170 ~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~------~----~~d~g~~g~v~~i~~~~I~~lL~~G~IPV 239 (358)
.+++. ++|..+++.|+++|++++++++.+.+++++.+.. + ..|++|+|+++.++.+.|+.+|++|.|||
T Consensus 75 ~~a~~-~ln~~lv~~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPV 153 (268)
T PRK14058 75 IMAMA-LINKQLVERLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPV 153 (268)
T ss_pred HHHHH-HHHHHHHHHHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEE
Confidence 99976 9999999999999999999999999998876531 1 25889999999999999999999999999
Q ss_pred EcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHH
Q 018330 240 IASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNC 319 (358)
Q Consensus 240 i~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~a 319 (358)
++|++.+.+|+.+|+|+|.+|+.+|.+|+|++|+|+|||||||+++|+++++|++++.+|++++.. +++|||.+|+++
T Consensus 154 i~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~--~~tGgM~~Kl~a 231 (268)
T PRK14058 154 VAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPDEGSLIERITPEEAEELSK--AAGGGMKKKVLM 231 (268)
T ss_pred EeCceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCCCCcCccCcCHHHHHHHhh--ccCCccHHHHHH
Confidence 999888888999999999999999999999999999999999998766678999999999999864 589999999999
Q ss_pred HHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 320 CIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 320 A~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
|.++++.|++++||+||+.|++|+.++ . |.||+|.+
T Consensus 232 a~~a~~~Gv~~v~I~~g~~~~~l~~~l-~--G~GT~I~~ 267 (268)
T PRK14058 232 AAEAVEGGVGRVIIADANVDDPISAAL-A--GEGTVIVN 267 (268)
T ss_pred HHHHHHcCCCEEEEEcCCCcchHHHHh-C--CCceEEec
Confidence 999999999889999999999986655 4 46999963
|
|
| >cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-49 Score=371.17 Aligned_cols=245 Identities=18% Similarity=0.287 Sum_probs=224.1
Q ss_pred HHhhhHHHHhhcC-------CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcc
Q 018330 81 LSESLPFIQKFRG-------KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153 (358)
Q Consensus 81 l~~a~pyi~~~~~-------k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~ 153 (358)
-||+..|+++|.. +.+|||+||++|.+ ++.+++++++|++|++.|.++||||||||+++..+. +.+
T Consensus 16 ~~e~~~~l~~f~~~~~~~~~~f~VIK~GG~~~~~---~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~----~~~ 88 (271)
T cd04236 16 PREARYWLTQFQIAMPNDWPAFAVLEVDHSVFRS---LEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS----DLE 88 (271)
T ss_pred HHHHHHHHHHhhccCCCCCCCEEEEEEChhhhcC---chhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc----CCc
Confidence 5899999999975 78999999999987 666689999999999999999999999999988776 222
Q ss_pred ccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh
Q 018330 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN 233 (358)
Q Consensus 154 ~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~ 233 (358)
+ ..+++++. ++|+.+++.|+++|++++++++. ++++++++ ..|++++|+|+++|.+.|+.+|+
T Consensus 89 ~------------~~~~~v~~-~~n~~Lv~~L~~~G~~A~gl~g~-~~~i~a~~---~~d~g~vG~V~~Vd~~~I~~lL~ 151 (271)
T cd04236 89 L------------QAARSRLV-KDCKTLVEALQANSAAAHPLFSG-ESVLQAEE---PEPGASKGPSVSVDTELLQWCLG 151 (271)
T ss_pred c------------hheehhHH-HHHHHHHHHHHhCCCCeeeecCc-cceEEEEE---cccCCccceEEEECHHHHHHHHh
Confidence 2 22456656 89999999999999999999987 58999988 35789999999999999999999
Q ss_pred CCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccH-HHHHHHHhCCCCCCC
Q 018330 234 SGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDI-KGVKKMIEDGKVGGG 312 (358)
Q Consensus 234 ~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~-~e~~~l~~~~~vtGG 312 (358)
+|+|||++|+++|.+|+.+|+|+|.+|+.+|.+|+|+||||+||++||+++ ++++|++|+. +|+++++++++++||
T Consensus 152 ~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~---~g~lI~~l~~~~e~~~li~~g~i~gG 228 (271)
T cd04236 152 SGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQ---KHKVLPQVHLPADLPSLSDAEWLSET 228 (271)
T ss_pred CCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECC---CCCCccccCcHHHHHHHHhCCEEcCC
Confidence 999999999999999999999999999999999999999999999999974 4789999995 999999999999999
Q ss_pred c---HHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 313 M---IPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 313 M---~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
| +||+++|+.++..|++ |+|++ |++|+.|+|++.|.||+|
T Consensus 229 m~~ki~ki~~~l~~l~~g~s-v~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 229 EQNRIQDIATLLNALPSMSS-AVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred eeechHHHHHHHHhcccCCe-EEEeC---hHHHHHHHhccCCCCCcC
Confidence 9 9999999999999999 99998 899999999999999986
|
Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF). |
| >cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=363.49 Aligned_cols=251 Identities=33% Similarity=0.529 Sum_probs=232.8
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhH-hCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHHh
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLS-VVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLV 174 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~-~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl~ 174 (358)
.||||||+++++ +..+.+++++|+.++ ..|.++|||||||++++.++++++++++|.+|+|+|+.++++++.+++.
T Consensus 1 ~ViK~GGs~l~~---~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~ 77 (252)
T cd04249 1 LVIKLGGALLET---EAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALA 77 (252)
T ss_pred CEEEEChHHhcC---hhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHc
Confidence 489999999988 544578999999875 4678999999999999999999999999999999999999999999888
Q ss_pred hhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCcccc
Q 018330 175 GRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNI 254 (358)
Q Consensus 175 g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i 254 (358)
+++|+.+++.|.++|++++++++.|++++++++.+ .|++++|+++.++.+.|+.+|+.|.|||+++++++++|+++|+
T Consensus 78 ~~~n~~lv~~l~~~Gv~a~~l~~~~~~~~~~~~~~--~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~ 155 (252)
T cd04249 78 GTANKQLMAQAIKAGLKPVGLSLADGGMTAVTQLD--PELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLMNV 155 (252)
T ss_pred CcccHHHHHHHHhCCCCceeeeccCCCEEEEEEcC--CCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCEeee
Confidence 89999999999999999999999999999999875 5799999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEE
Q 018330 255 NADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASII 334 (358)
Q Consensus 255 ~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii 334 (358)
|+|++|+++|.+|+|+ ++|+|||+|||++ | +++|++++.+|+++++..++++|||.+|+++|.++++.|+.++||+
T Consensus 156 ~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~--~-~~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~ 231 (252)
T cd04249 156 NADQAATAIAQLLNAD-LVLLSDVSGVLDA--D-KQLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIA 231 (252)
T ss_pred cHHHHHHHHHHHcCCC-EEEEeCCcccCCC--C-CcCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEE
Confidence 9999999999999999 7899999999986 2 4799999999999998888999999999999999999988889999
Q ss_pred eCCCcchHHHHHHcCCCCceEE
Q 018330 335 DGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 335 ~G~~~~~Ll~el~~~~g~GT~I 356 (358)
+|+.|+.| .++|++++.||+|
T Consensus 232 ~g~~~~~l-~~~l~g~~~GT~I 252 (252)
T cd04249 232 SWQYPEQL-TALLAGEPVGTKI 252 (252)
T ss_pred eCCCccHH-HHHHcCCCCCcCC
Confidence 99999975 7899999999986
|
There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK). |
| >cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-47 Score=357.25 Aligned_cols=242 Identities=40% Similarity=0.677 Sum_probs=221.7
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccC---C--cccCCHHHHHHHH
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD---G--LRVTDANTMEIVS 170 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~---g--~rvt~~~~~~~v~ 170 (358)
+||||||+++++ . ..++++|++| |.++|||||||+++|.+++++|++++|.+ | .|+|++++|+.+.
T Consensus 1 ~VIKlGGs~l~~---~---~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~ 71 (257)
T cd04251 1 IVVKIGGSVVSD---L---DKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFV 71 (257)
T ss_pred CEEEEChHHhhC---h---HHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHH
Confidence 589999999997 2 5689999988 89999999999999999999999999975 7 4999999999999
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecC--------C--CCCCCCcccceeecCHHHHHHHHhCCCeEEE
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPS--------P--NSDKLGFVGEVARVDPTVIEPLVNSGHIPVI 240 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~--------~--~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi 240 (358)
+++ +++|+.+++.|+++|++++++++.++++++++.. + ...|++|+|+++.++.+.|+.+|++|.|||+
T Consensus 72 ~a~-~~ln~~iv~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi 150 (257)
T cd04251 72 MVM-GLINKKIVARLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVV 150 (257)
T ss_pred HHH-HHHHHHHHHHHHhCCCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEE
Confidence 997 9999999999999999999999999999988864 1 1347899999999999999999999999999
Q ss_pred cCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHH
Q 018330 241 ASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCC 320 (358)
Q Consensus 241 ~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA 320 (358)
+|++++.+|+.+|+|+|++|+.+|.+|+|++|+|+|||+|||++ +++|++++++|+++++. +++|||.+|+++|
T Consensus 151 ~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~----~~~i~~i~~~e~~~l~~--~~~ggm~~Kl~aa 224 (257)
T cd04251 151 SPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLD----GRVIERITVSDAESLLE--KAGGGMKRKLLAA 224 (257)
T ss_pred eCcEECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeC----CcccCccCHHHHHHHHh--hCCCchHHHHHHH
Confidence 99999989999999999999999999999999999999999974 68999999999999873 5999999999999
Q ss_pred HHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
.++++.|+.++||+||+.|++| .+++. |.||.|
T Consensus 225 ~~a~~~gv~~v~i~~g~~~~~l-~~~l~--g~gT~i 257 (257)
T cd04251 225 AEAVEGGVREVVIGDARADSPI-SSALN--GGGTVI 257 (257)
T ss_pred HHHHHcCCCEEEEecCCCccHH-HHHHc--CCCcCC
Confidence 9999999999999999999997 55665 469976
|
This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK). |
| >TIGR00761 argB acetylglutamate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=349.93 Aligned_cols=231 Identities=54% Similarity=0.896 Sum_probs=218.7
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHHh
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLV 174 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl~ 174 (358)
++||||||+++++ + +.+++++|+.|+..|.++|||||||++++.++++++++.++.+|+|+|++++++.+.+++.
T Consensus 1 ~~ViK~GGs~l~~---~--~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~ 75 (231)
T TIGR00761 1 TIVIKIGGAAISD---L--LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLI 75 (231)
T ss_pred CEEEEEChHHHhc---c--HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHh
Confidence 5899999999998 4 5789999999999999999999999999999999999988999999999999999999988
Q ss_pred hhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCcccc
Q 018330 175 GRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNI 254 (358)
Q Consensus 175 g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i 254 (358)
|++|+.+++.|+++|++++++++.+++++++++.. ..|++++|+++.++.+.|+.+|++|.|||++|++.+.+|+++|+
T Consensus 76 g~~~~~i~~~L~~~G~~a~~l~~~~~~~it~~~~~-~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~~~~~~g~~~~l 154 (231)
T TIGR00761 76 GQVNKELVALLNKHGINAIGLTGGDGQLFTARSLD-KEDLGYVGEIKKVNKALLEALLKAGYIPVISSLALTAEGQALNV 154 (231)
T ss_pred cchHHHHHHHHHhCCCCcccccCCCCCEEEEEECC-CccCCcccceEEEcHHHHHHHHHCCCeEEECCCccCCCCcEEEe
Confidence 89999999999999999999999999999999865 46799999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEE
Q 018330 255 NADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASI 333 (358)
Q Consensus 255 ~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~I 333 (358)
|+|++|+.+|.+|+|++|+|+|||||||++ ||+++|++|+++|+++++..+++||||++||++|.++++.|++++||
T Consensus 155 ~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~--d~~~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~v~i 231 (231)
T TIGR00761 155 NADTAAGALAAALGAEKLVLLTDVPGILNG--DGQSLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSVHI 231 (231)
T ss_pred CHHHHHHHHHHHcCCCEEEEEECCCCeecC--CCCeeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCEEEC
Confidence 999999999999999999999999999987 56679999999999999988899999999999999999999999986
|
This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model. |
| >PRK04531 acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-44 Score=352.65 Aligned_cols=225 Identities=34% Similarity=0.531 Sum_probs=206.6
Q ss_pred HHhhhHHHHhhcC----CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccC
Q 018330 81 LSESLPFIQKFRG----KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD 156 (358)
Q Consensus 81 l~~a~pyi~~~~~----k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~ 156 (358)
-||++||+++||+ +++|||+||+++.+ + .+.++++|++|+..|.++|||||||++++.++++.|++++|.+
T Consensus 20 ~~e~~~~l~~F~~~~~~~~~VIKiGG~~l~~---~--~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~ 94 (398)
T PRK04531 20 AKEISQYLKRFSQLDAERFAVIKVGGAVLRD---D--LEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVN 94 (398)
T ss_pred hhhhHHHHHHHhCcCCCcEEEEEEChHHhhc---C--HHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEEC
Confidence 4799999999998 99999999999986 3 3789999999999999999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCC
Q 018330 157 GLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGH 236 (358)
Q Consensus 157 g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~ 236 (358)
|+|+|++++|+++.|++ +++|..+++. |+.+|+.|+
T Consensus 95 G~RVTd~~tl~vv~~~l-~~vn~~lv~~-------------------------------------------I~~~L~~g~ 130 (398)
T PRK04531 95 GLRVTSPEALAIVRKVF-QRSNLDLVEA-------------------------------------------VESSLRAGS 130 (398)
T ss_pred CEecCCHHHHHHHHHHH-HHHHHHHHHH-------------------------------------------HHHHHHCCC
Confidence 99999999999999996 4888766653 788999999
Q ss_pred eEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccH-HHHHHHHhCCCCCCCcHH
Q 018330 237 IPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDI-KGVKKMIEDGKVGGGMIP 315 (358)
Q Consensus 237 IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~-~e~~~l~~~~~vtGGM~~ 315 (358)
|||++|++.+.+|+++|+|+|.+|+.+|.+|+|+||||+||++|||+. ++++|++|+. +|++.++..++++|||++
T Consensus 131 IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~---~g~~i~~i~~~~e~~~l~~~~~vtgGM~~ 207 (398)
T PRK04531 131 IPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDA---DGKLISSINLSTEYDHLMQQPWINGGMKL 207 (398)
T ss_pred EEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC---CCCCcccCCHHHHHHHHHhcCCCCccHHH
Confidence 999999998889999999999999999999999999999999999974 3789999997 688888888899999999
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 316 KVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 316 Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
||++|.++++ +++++|++++..|++|+.|+|+++|.||+|.+
T Consensus 208 KL~~a~~al~-~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~ 249 (398)
T PRK04531 208 KLEQIKELLD-RLPLESSVSITSPSDLAKELFTHKGSGTLVRR 249 (398)
T ss_pred HHHHHHHHHh-CCCcEEEEEecCCCHHHHHHccCCCCCeEEec
Confidence 9999999985 46679999999999999999999999999964
|
|
| >PRK12352 putative carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=337.30 Aligned_cols=260 Identities=22% Similarity=0.333 Sum_probs=218.1
Q ss_pred CCeEEEEECCcccCCCChh-------HHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHH-
Q 018330 93 GKTIVVKYGGAAMKPNQKD-------NLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDAN- 164 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~~-------~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~- 164 (358)
.|++||||||++|.+++.. +-...++++|++|++.|+++|||||+||+++.++.+.++.++| +|+|+|+.+
T Consensus 2 ~k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~-~g~rvt~~~~ 80 (316)
T PRK12352 2 KELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHER-EGLPLTPLAN 80 (316)
T ss_pred CcEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCccccc-CCCCCCCHHH
Confidence 3799999999999774311 2236899999999999999999999999999999999999999 699999997
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHcCCee-------EeecCCCccEE-EeecCCC-------------CCCCCcccc----
Q 018330 165 TMEIVSMVLVGRVNKSLVSLINKAGATA-------VGLSGMDGRLF-TARPSPN-------------SDKLGFVGE---- 219 (358)
Q Consensus 165 ~~~~v~~vl~g~ln~~lv~~L~~~Gi~a-------v~lsg~d~~ll-~a~~~~~-------------~~d~g~~g~---- 219 (358)
+.+.....+.+.+|+.|+..|.++|..+ +++++.|++++ .++|.+. ..|++|++.
T Consensus 81 ~v~~~~g~i~~~i~~~L~~~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G 160 (316)
T PRK12352 81 CVADTQGGIGYLIQQALNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRG 160 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCC
Confidence 3333333335788999999999988663 88899999998 6666431 237888555
Q ss_pred ----------eeecCHHHHHHHHhCCCeEEEc-----CCccCCCCC----ccccChHHHHHHHHHHcCCCeEEEeecccc
Q 018330 220 ----------VARVDPTVIEPLVNSGHIPVIA-----SVAADEFGQ----SYNINADTVAGELAAALGAEKLILLTDVAG 280 (358)
Q Consensus 220 ----------v~~i~~~~I~~lL~~G~IPVi~-----gv~~~~~G~----~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~G 280 (358)
++.++.+.|+.||++|+|||.+ |++.+..|+ .+|+|+|.+|+.+|.+|+||+|||+|||+|
T Consensus 161 ~rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~G 240 (316)
T PRK12352 161 YRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEK 240 (316)
T ss_pred eEEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchh
Confidence 9999999999999999996666 665555554 456999999999999999999999999999
Q ss_pred ccccccccC-cccccccHHHHHHHHhCCCC-CCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 281 ILENREDPM-SLVKEIDIKGVKKMIEDGKV-GGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 281 V~~~~~dp~-~lI~~I~~~e~~~l~~~~~v-tGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
||.++++|+ ++|++++.+|++++++++.+ +|||.||+++|+++++.|+.++||++ ++.+ .++|+|+ .||+|.+
T Consensus 241 V~~d~~~~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i-~~al~g~-~GT~I~~ 315 (316)
T PRK12352 241 VCIHFGKPQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECL-PAALRGE-TGTHIIK 315 (316)
T ss_pred hccCCCCCCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHH-HHHHcCC-CCeEEEe
Confidence 998876666 59999999999999988877 48999999999999999999999997 6665 6788877 9999863
|
|
| >cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=329.39 Aligned_cols=241 Identities=27% Similarity=0.409 Sum_probs=208.5
Q ss_pred eEEEEECCcccCCCCh-----hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQK-----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIV 169 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~-----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v 169 (358)
++|||+||+++++++. ...+++++++|+.++ |+++|||||||++++.+++++|+++ |.|+++++.+..+
T Consensus 1 ~iVIKiGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~~~g~~~----g~~~~~~~~l~~~ 74 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEYGLPD----GDGSFSAEGVAET 74 (252)
T ss_pred CEEEEEeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHHHHhCCCc----CCCchhhhhHHHH
Confidence 4899999999998642 123355666666554 9999999999999999999999986 7789999999988
Q ss_pred HHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccCCC
Q 018330 170 SMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AADEF 248 (358)
Q Consensus 170 ~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~~~ 248 (358)
.+. ++++|..+++.|.++|+++.++++.+. +.++ .|++..++.+.++.+|++|+|||++|. +.+.+
T Consensus 75 ~~~-~~~ln~~~~~~l~~~g~~a~~l~~~~~--~~~~----------~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~ 141 (252)
T cd04241 75 HEA-MLELNSIVVDALLEAGVPAVSVPPSSF--FVTE----------NGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEG 141 (252)
T ss_pred HHH-HHHHHHHHHHHHHHCCCCeEEEChHHe--EEec----------CCeeeeecHHHHHHHHhCCCEEEEcCCeEecCC
Confidence 887 469999999999999999999998553 3322 467788999999999999999999984 46778
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHh-----CCCCCCCcHHHHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIE-----DGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~-----~~~vtGGM~~Kv~aA~~a 323 (358)
|+.+|+|+|++|+.+|.+|+|++|+|+|||||||+++|+++++|++++.+|++++.. .++++|||.+|+++|..+
T Consensus 142 ~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a 221 (252)
T cd04241 142 GGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPPPDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLEL 221 (252)
T ss_pred CCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHH
Confidence 889999999999999999999999999999999998664457999999988988876 467999999999999999
Q ss_pred HHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 324 LAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
++.|++ ++|+||+.|+.| .++++++.+||+|
T Consensus 222 ~~~Gv~-v~I~~g~~~~~l-~~~l~g~~~GT~i 252 (252)
T cd04241 222 ARRGIE-VYIFNGDKPENL-YRALLGNFIGTRI 252 (252)
T ss_pred HhcCCe-EEEEeCCCHHHH-HHHHcCCCCceEC
Confidence 999998 999999999886 6788988999986
|
Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). |
| >cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=295.15 Aligned_cols=242 Identities=28% Similarity=0.453 Sum_probs=213.1
Q ss_pred EEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHHhhh
Q 018330 97 VVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGR 176 (358)
Q Consensus 97 VIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl~g~ 176 (358)
||||||+++++ +..+.+++++|+.++..|+++|||||||++++.++.+++....+..+.++++.+..+++.+. .+.
T Consensus 1 ViKiGGs~l~~---~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 76 (248)
T cd02115 1 VIKFGGSSVSS---EERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMG-EGM 76 (248)
T ss_pred CEeeCccccCC---HHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHH-HHH
Confidence 79999999998 55567899999999888999999999999999999998887777778899998888887776 478
Q ss_pred hHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCC---CCCccc
Q 018330 177 VNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE---FGQSYN 253 (358)
Q Consensus 177 ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~---~G~~~~ 253 (358)
++..+++.|+++|+++.++++.+..+... +++++|.+..++.+.|+.+|+.|.|||++|+.... .++..+
T Consensus 77 ~~~~~~~~l~~~gi~a~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~ 149 (248)
T cd02115 77 SNLLIAAALEQHGIKAVPLDLTQAGFASP-------NQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGR 149 (248)
T ss_pred HHHHHHHHHHhCCCCeEEEchHHcCeEeC-------CCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecC
Confidence 88899999999999999999877766543 36778999999999999999999999999975433 677889
Q ss_pred cChHHHHHHHHHHcCCCeEEEeeccccccccccc--c-CcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCE
Q 018330 254 INADTVAGELAAALGAEKLILLTDVAGILENRED--P-MSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRT 330 (358)
Q Consensus 254 i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p-~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~ 330 (358)
+++|++|+.+|.+|+|++|+|+|||+|||+++|. | +++|++|+++|++++... |+|..|++++..+.+.|++
T Consensus 150 ~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~----g~~~~k~~a~~~~~~~~~~- 224 (248)
T cd02115 150 GGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYA----GAMVLKPKAADPAARAGIP- 224 (248)
T ss_pred CCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHc----CCCccCHHHHHHHHHcCCc-
Confidence 9999999999999999999999999999998542 2 479999999999998753 6799999999999999976
Q ss_pred EEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 331 ASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 331 v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
++|+|++.|++| ++|++++.||+|
T Consensus 225 v~I~~~~~~~~l--~~~~~~~~GT~I 248 (248)
T cd02115 225 VRIANTENPGAL--ALFTPDGGGTLI 248 (248)
T ss_pred EEEEeCCCcccc--cccCCCCCCCCC
Confidence 999999999997 899999999986
|
The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. |
| >PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=284.74 Aligned_cols=229 Identities=39% Similarity=0.623 Sum_probs=204.5
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVL 173 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl 173 (358)
|++||||||+++++++ +. +..++++|+.+...|+++|||||||++++.+++++++.+.+.++.|+++.....++.+.+
T Consensus 1 k~~ViK~GGs~l~~~~-~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 78 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKD-EE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPKFVDGSRVTDIETGLIITMAA 78 (242)
T ss_dssp SEEEEEE-HHGHSSHS-HH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTSEETHHCHBHHHHHHHHHHHH
T ss_pred CeEEEEECchhhCCch-HH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCcccchhhhhhhhhhhHHHHHHH
Confidence 6899999999999922 15 689999999999999999999999999999999999999998899999999888888888
Q ss_pred hhhhHH-----HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCc-cCC
Q 018330 174 VGRVNK-----SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVA-ADE 247 (358)
Q Consensus 174 ~g~ln~-----~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~-~~~ 247 (358)
.+++|+ .++..+..+|+.++++.+.+.++....... ..++.+.|+.+|++|.|||++|+. .+.
T Consensus 79 ~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~l~~~~ipVv~g~~~~~~ 147 (242)
T PF00696_consen 79 AAELNRDALLDEIVSAGERLGAHAVGLSLSDGGISAAKRDA-----------REVDKEAIRELLEQGIIPVVSGFAGIDD 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTHHEEEHHHTGGTEEEEEEES-----------SEEHHHHHHHHHHTTSEEEEESEEEEET
T ss_pred hhccccchhHHHHHHhhhhhhHHHHhhhhhcccchhhhhhh-----------hhhHHHHHHHHHHCCCEEEEeCCcccCC
Confidence 889998 899999999999999998887776655422 156899999999999999999976 888
Q ss_pred CCCc---cccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHH-hCCCCCCCcHHHHHHH
Q 018330 248 FGQS---YNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMI-EDGKVGGGMIPKVNCC 320 (358)
Q Consensus 248 ~G~~---~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~-~~~~vtGGM~~Kv~aA 320 (358)
+|++ .++++|++|+++|.+|+|++|+|+|||||||+.+|+ |+ ++|++|+++|+.++. ..++++|||.+|+.+|
T Consensus 148 ~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a 227 (242)
T PF00696_consen 148 DGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAA 227 (242)
T ss_dssp TSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHH
T ss_pred CCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 9999 999999999999999999999999999999997542 34 699999999999998 6788999999999999
Q ss_pred HHHHHcCCCEEEEEe
Q 018330 321 IRSLAQGVRTASIID 335 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~ 335 (358)
.++++.|+.+++|+|
T Consensus 228 ~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 228 LEAAEEGGIPVHIIN 242 (242)
T ss_dssp HHHHHHTTSEEEEEE
T ss_pred HHHHHcCCCcEEEeC
Confidence 999999887799986
|
In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A .... |
| >KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=294.83 Aligned_cols=330 Identities=34% Similarity=0.478 Sum_probs=269.6
Q ss_pred cccc-cccccccccccCC-CCCCceeeecC-CccccccccccccccccccccccccccccCCCCChhhhHHHHHhhhHHH
Q 018330 12 APFL-QSQLSFSSKSKAG-SQSPSVFKIKT-PHVENFASNHRTEITKSSRSLTSAATAVTDTQTPAEFRVDILSESLPFI 88 (358)
Q Consensus 12 ~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~pyi 88 (358)
--|+ ++..+|.++.+.+ +..|+++.|.+ .|. +|.-..+..+++... .-. ...++..++.+++|++||+
T Consensus 19 ~s~~s~~~k~~l~~~~s~~~~~~~~~~F~~~~~s---~~~~~st~~~~~~~d---~~i---~~~s~~~~v~~~~e~l~yi 89 (520)
T KOG2436|consen 19 NSFRSRSPKSFLSKNASNKSGSPNTCSFARRGWS---KPANSSTKSSIADRD---ALI---PLVSSDTTVRILRESLPYI 89 (520)
T ss_pred cceeecCcccccCccCCCCcCCCCceeecccccc---ccccccccccccccc---ccc---cCCCChhHHHHHHHHHHHH
Confidence 3466 8888999998886 66699999988 444 443333322222211 000 1236688999999999999
Q ss_pred HhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHH
Q 018330 89 QKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 89 ~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
+.|+++++||+.+|.++.. .+...+++++++|+..|.++|||||+++++++++...|+++.|.+|+|+|+..+|++
T Consensus 90 ~~~~~q~fvV~~~g~~~~t----~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~ 165 (520)
T KOG2436|consen 90 TSFRDQKFVVIKSGEAIST----SLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQA 165 (520)
T ss_pred HHhcCceEEEEeccccccc----chHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHH
Confidence 9999998888888888843 345789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHcCCeeEeecCCC--ccEEEeec--CCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCc
Q 018330 169 VSMVLVGRVNKSLVSLINKAGATAVGLSGMD--GRLFTARP--SPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVA 244 (358)
Q Consensus 169 v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d--~~ll~a~~--~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~ 244 (358)
..+..++|.|..++..|+++|-.+++.++.+ ++++.+++ ..++++|+++|+|.+++.+.|+++++.|.+|+++.++
T Consensus 166 ~~~~~~~E~n~~lv~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla 245 (520)
T KOG2436|consen 166 AKESVSLEANLNLVINLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLA 245 (520)
T ss_pred hhhcchhhhhhHHHHHHHHhhceeccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhc
Confidence 9996688999999999999999999988763 45788887 3457899999999999999999999999999999999
Q ss_pred cCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHH----HHHHHhCCCCCCCcHHHHHHH
Q 018330 245 ADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKG----VKKMIEDGKVGGGMIPKVNCC 320 (358)
Q Consensus 245 ~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e----~~~l~~~~~vtGGM~~Kv~aA 320 (358)
.+.+|+.+|+|+|.+|.++|..|+|+++++++|+ |...+ ..++.++-++.+| ++....+..++++|..++..+
T Consensus 246 ~TaSGqvlnvNa~~~a~elA~~L~~~kli~l~d~-g~~l~--e~ge~~S~l~l~~e~~~l~k~~qq~~~a~~~v~aV~~~ 322 (520)
T KOG2436|consen 246 ATASGQVLNVNADEVAGELALALGPDKLILLMDK-GRILK--ENGEDISSLILQEEDAGLRKPSQQKNIAANNVKAVKDG 322 (520)
T ss_pred ccCccceEEeeHHHHhhHHHhccCcceeEEeccc-ccccc--cCcccccccccchhHhhhhhhhhhcccccccchhhhhh
Confidence 9999999999999999999999999999999997 44432 1134555555443 444445677999999999998
Q ss_pred HHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
..+....... +.++...+++++.++|+++|.||+|.|
T Consensus 323 ~~~~~p~~~s-~~i~~~t~~n~~~~~~te~G~~t~~~~ 359 (520)
T KOG2436|consen 323 IDSSLPRPSS-YNIAITTQQNLIKELFTEKGAGTLISG 359 (520)
T ss_pred eeeccCcCCC-CCcceeecccccceeeccCCCCccccC
Confidence 8875555554 677778888888999999999999875
|
|
| >cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=278.29 Aligned_cols=250 Identities=23% Similarity=0.248 Sum_probs=188.6
Q ss_pred CCeEEEEECCcccCCCCh----hHHHHHHHHHHHHhHhCCCeEE-EEECChHHHhHHHHHcCC-Cccc---cCCcc----
Q 018330 93 GKTIVVKYGGAAMKPNQK----DNLLASVVKDLVLLSVVGLRPV-LVHGGGPEINFWLKRFGI-EPVF---RDGLR---- 159 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~----~~l~~~~~~~Ia~L~~~G~~vV-LVhGgg~~i~~~l~~~gi-~~~~---~~g~r---- 159 (358)
.+++|||+||++|++++. ...+..++++|+.|++.|+++| ++||++.+++..+..++. ...+ ..|..
T Consensus 8 ~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~~~~~ 87 (284)
T cd04256 8 AKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQLKDM 87 (284)
T ss_pred CCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhcccccccCC
Confidence 389999999999998752 2345789999999999999999 666667777877765542 1111 11111
Q ss_pred cCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEE
Q 018330 160 VTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPV 239 (358)
Q Consensus 160 vt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPV 239 (358)
..+....+++..+.+..|...|.+.|+++|+.+ +|++.+++. |.. .+......+.|+.||+.|+|||
T Consensus 88 ~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~-------~q~llt~~d-----~~~-~~~~~~~~~~l~~lL~~g~iPV 154 (284)
T cd04256 88 PQMELDGRACAAVGQSGLMALYEAMFTQYGITV-------AQVLVTKPD-----FYD-EQTRRNLNGTLEELLRLNIIPI 154 (284)
T ss_pred cchhHHHHHHHHcccHHHHHHHHHHHHHcCCcH-------HHeeeeccc-----ccc-HHHHHHHHHHHHHHHHCCCEEE
Confidence 222233455566666788899999999999987 677666542 211 1123345889999999999999
Q ss_pred EcC-Ccc------CCCCCc--cccChHHHHHHHHHHcCCCeEEEeecccccccccc-ccC-cccccccHHHHHHHHh---
Q 018330 240 IAS-VAA------DEFGQS--YNINADTVAGELAAALGAEKLILLTDVAGILENRE-DPM-SLVKEIDIKGVKKMIE--- 305 (358)
Q Consensus 240 i~g-v~~------~~~G~~--~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~-dp~-~lI~~I~~~e~~~l~~--- 305 (358)
+++ ... +++|+. .++|+|++|+++|..++|++|+|+|||||||+++| +|+ ++|++++..+...+..
T Consensus 155 i~~nD~v~~~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~~~~~~ 234 (284)
T cd04256 155 INTNDAVSPPPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTFYPGDQQSITFGTK 234 (284)
T ss_pred EeCCCcccccccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCCCCCCeEcccccHhHHHHhhcccc
Confidence 996 221 122443 35899999999999999999999999999999854 344 6999999877766532
Q ss_pred CCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 306 DGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 306 ~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+.+||||.+||++|..+.+.|++ ++|++|+.|+.| .+++.|+.+||+|.
T Consensus 235 s~~gtGGM~~Kl~Aa~~a~~~Gi~-v~I~~G~~~~~i-~~~l~G~~~GT~~~ 284 (284)
T cd04256 235 SRVGTGGMEAKVKAALWALQGGTS-VVITNGMAGDVI-TKILEGKKVGTFFT 284 (284)
T ss_pred cCcccCCcHHHHHHHHHHHHCCCe-EEEEcCCCccHH-HHHHcCCCCCEEeC
Confidence 345799999999999999999998 999999999996 67889999999984
|
G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. |
| >COG1608 Predicted archaeal kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=267.91 Aligned_cols=238 Identities=23% Similarity=0.338 Sum_probs=181.2
Q ss_pred eEEEEECCcccCCCChh-HHHHHHHHHHHH-hH-hCCCeEEEEECChHHHhHHHHHcCCCc--c--ccCCcccCCHHHHH
Q 018330 95 TIVVKYGGAAMKPNQKD-NLLASVVKDLVL-LS-VVGLRPVLVHGGGPEINFWLKRFGIEP--V--FRDGLRVTDANTME 167 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~-~l~~~~~~~Ia~-L~-~~G~~vVLVhGgg~~i~~~l~~~gi~~--~--~~~g~rvt~~~~~~ 167 (358)
.+|+|||||++|+|+.+ .++++.++.++. +. ..-.++|||||||+|+|...++++++. . ...|...|+..
T Consensus 2 ~~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~~~~~~livVHGgGSFGHp~Ak~~~~~~~~~~~s~~G~~~~~~a--- 78 (252)
T COG1608 2 VIILKLGGSVITDKDKPRTVREDRLRRIAREISNGKPEKLIVVHGGGSFGHPAAKEFGLEGLKNYLSPLGFSLTHLA--- 78 (252)
T ss_pred eEEEEecceeeecCCCcchhhHHHHHHHHHHHhcCCcccEEEEecCccccCHHHHHhCccccccccCccchHHHHHH---
Confidence 38999999999999864 344444444443 32 223478999999999999999999931 1 12344444433
Q ss_pred HHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccC
Q 018330 168 IVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAAD 246 (358)
Q Consensus 168 ~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~ 246 (358)
+-+||..+++.|.+.|+++++..+.+.- .+.|++..-..+.++.+|+.|++||++| +..+
T Consensus 79 ------m~~L~~~V~~~l~~~Gv~av~~~P~s~~-------------~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d 139 (252)
T COG1608 79 ------MLELNSIVVDALLDAGVRAVSVVPISFS-------------TFNGRILYTYLEAIKDALEKGFVPVLYGDVVPD 139 (252)
T ss_pred ------HHHHHHHHHHHHHhcCCccccccCccee-------------ecCCceeechHHHHHHHHHcCCEeeeecceEEc
Confidence 3478999999999999998765432111 2345555556899999999999999999 4566
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHH---HhC--CCCCCCcHHHHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKM---IED--GKVGGGMIPKVNCCI 321 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l---~~~--~~vtGGM~~Kv~aA~ 321 (358)
.+..+.++++|.++.+||..|++|+++|+|||||||+.+ |++.++....++++.+ ... .++||||..|++++.
T Consensus 140 ~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~--p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~ 217 (252)
T COG1608 140 DDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRD--PGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALL 217 (252)
T ss_pred CCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecCC--CCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHH
Confidence 666788999999999999999999999999999999983 4433333333444442 222 379999999999999
Q ss_pred HHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 322 RSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 322 ~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+..+.+.+ |+|+||+.|++| .+++.|+.+||.|.+
T Consensus 218 ~~~~~~~~-vyi~ng~~~~ni-~~~l~G~~vGT~I~~ 252 (252)
T COG1608 218 EIARYGKE-VYIFNGNKPENI-YRALRGENVGTRIDG 252 (252)
T ss_pred HHHhcCce-EEEECCCCHHHH-HHHhcCCCCceEecC
Confidence 99888988 999999999997 678899999999975
|
|
| >cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=269.79 Aligned_cols=239 Identities=23% Similarity=0.318 Sum_probs=176.2
Q ss_pred eEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSM 171 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~ 171 (358)
++||||||+++++++. ...+.++++.|+.++..|+++||||||+...+ ...+++...+ ......+.+..
T Consensus 1 ~iViK~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g--~~~~~~~~~~------~~~~~~~~~~~ 72 (251)
T cd04242 1 RIVVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAG--RQRLGLEKRP------KTLPEKQALAA 72 (251)
T ss_pred CEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhC--hhhhccCcCC------CchhHHHHHHH
Confidence 5899999999999752 23457889999999888999999998643322 2234443321 01111222222
Q ss_pred HHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccCCCCC
Q 018330 172 VLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AADEFGQ 250 (358)
Q Consensus 172 vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~~~G~ 250 (358)
+....++..+...|+++|+++. +++.+.. +|.. ........+.|+.+|+.|+|||+++. ... .++
T Consensus 73 ~Gq~~l~~~~~~~l~~~Gi~~~-------q~l~t~~-----~~~~-~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~-~~~ 138 (251)
T cd04242 73 VGQSLLMALYEQLFAQYGIKVA-------QILLTRD-----DFED-RKRYLNARNTLETLLELGVIPIINENDTVA-TEE 138 (251)
T ss_pred HhHHHHHHHHHHHHHHcCCeEE-------EEEEehh-----Hhcc-hHHHHHHHHHHHHHHHCCCEEEEcCCCCee-eec
Confidence 2234677789999999999973 3333221 1211 11111236889999999999999972 221 233
Q ss_pred ccccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-ccccccc--HHHHHHHH---hCCCCCCCcHHHHHHHHH
Q 018330 251 SYNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEID--IKGVKKMI---EDGKVGGGMIPKVNCCIR 322 (358)
Q Consensus 251 ~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~--~~e~~~l~---~~~~vtGGM~~Kv~aA~~ 322 (358)
..++|+|++|+++|.+|+|++|+|+|||||||+++|+ |+ ++|++|+ ++|+.+++ ..++++|||.+|+++|..
T Consensus 139 ~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~ 218 (251)
T cd04242 139 IRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARI 218 (251)
T ss_pred cccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHH
Confidence 5677999999999999999999999999999998653 33 6999999 89999884 345789999999999999
Q ss_pred HHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 323 SLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 323 al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.+.|++ ++|+||+.|+.| .++|+|++.||+|.
T Consensus 219 a~~~gi~-v~I~~g~~~~~i-~~~l~g~~~GT~i~ 251 (251)
T cd04242 219 ATEAGIP-VVIANGRKPDVL-LDILAGEAVGTLFL 251 (251)
T ss_pred HHHCCCc-EEEEcCCCCCHH-HHHHcCCCCCeEeC
Confidence 9999998 999999999886 67889989999984
|
G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir |
| >PRK05429 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=280.78 Aligned_cols=241 Identities=23% Similarity=0.337 Sum_probs=183.0
Q ss_pred CeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
+++||||||+++++++. +..+..++++|+.++..|+++||||||+ +...+..+++...+ .+++..+ .+.
T Consensus 9 ~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGa--i~~g~~~l~l~~~~---~~~~~~q---a~a 80 (372)
T PRK05429 9 RRIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGA--VAAGRERLGLPERP---KTLAEKQ---AAA 80 (372)
T ss_pred CEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccH--hhhhHhhcCCCCCC---CchHHHH---HHH
Confidence 78999999999998642 3455789999999999999999999885 33344567765432 1222223 333
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecC-HHHHHHHHhCCCeEEEcCCccCCCC
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVD-PTVIEPLVNSGHIPVIASVAADEFG 249 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~-~~~I~~lL~~G~IPVi~gv~~~~~G 249 (358)
.+....++..|.+.|+++|+++..+ +.++. |+ ..+.+.++ .+.|..||+.|.|||+++...-...
T Consensus 81 avGq~~L~~~~~~~l~~~gi~~~qi-------l~t~~-----d~--~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~ 146 (372)
T PRK05429 81 AVGQSRLMQAYEELFARYGITVAQI-------LLTRD-----DL--EDRERYLNARNTLRTLLELGVVPIINENDTVATD 146 (372)
T ss_pred HHhHHHHHHHHHHHHHHCCCCEEEE-------Eeehh-----Hh--hhhhHhhhHHHHHHHHHHCCCEEEEcCCCcccee
Confidence 3334678889999999999998553 22221 11 11112334 6889999999999999962111122
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccH--HHHHHHHh---CCCCCCCcHHHHHHHH
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDI--KGVKKMIE---DGKVGGGMIPKVNCCI 321 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~--~e~~~l~~---~~~vtGGM~~Kv~aA~ 321 (358)
+..++|+|++|+++|.+|+|++|+|+|||||||+++|+ |+ ++|+++++ +|+++++. .+.++|||.+|+++|.
T Consensus 147 ~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~ 226 (372)
T PRK05429 147 EIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAAR 226 (372)
T ss_pred cccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHH
Confidence 35678999999999999999999999999999998653 44 69999987 67888865 3578999999999999
Q ss_pred HHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 322 RSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 322 ~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+.+.|++ ++|+||+.|+.| .++|+|++.||+|.+
T Consensus 227 ~a~~~Gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 261 (372)
T PRK05429 227 IATRAGIP-VVIASGREPDVL-LRLLAGEAVGTLFLP 261 (372)
T ss_pred HHHHCCCe-EEEEcCCCccHH-HHHhcCCCCCEEEee
Confidence 99999998 999999999976 678899899999964
|
|
| >PRK13402 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=282.01 Aligned_cols=239 Identities=23% Similarity=0.356 Sum_probs=187.2
Q ss_pred CeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
+++|||+||+++++.+. +..+..++++|+.|++.|+++||||||+.+++. .+++.. ++.+++..+++..+.
T Consensus 6 kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~--~~l~~~----~~~~~~~~qalaavG 79 (368)
T PRK13402 6 KRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGY--HKLGFI----DRPSVPEKQAMAAAG 79 (368)
T ss_pred cEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCc--cccCCC----CCCCccHHHHHHHhh
Confidence 79999999999997421 355678999999999999999999999987765 344432 344777777777766
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeec-CHHHHHHHHhCCCeEEEcCC-ccCCC
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARV-DPTVIEPLVNSGHIPVIASV-AADEF 248 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i-~~~~I~~lL~~G~IPVi~gv-~~~~~ 248 (358)
|+ .++..|.+.|+++|+++. |++.+.. |+ ..+-+.. -.+.+..||+.|.|||+++. ... .
T Consensus 80 q~---~l~~~~~~~f~~~g~~~a-------qvLlT~~-----d~--~~~~~y~n~~~~l~~LL~~g~IPIinenD~v~-~ 141 (368)
T PRK13402 80 QG---LLMATWSKLFLSHGFPAA-------QLLLTHG-----DL--RDRERYINIRNTINVLLERGILPIINENDAVT-T 141 (368)
T ss_pred HH---HHHHHHHHHHHHCCCeEE-------EEEEecc-----hh--hhHHHHHHHHHHHHHHHHCCcEEEEeCCCcEe-e
Confidence 65 488899999999999984 4433332 11 1110111 14799999999999999962 222 2
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccH--HHHHHHHh---CCCCCCCcHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDI--KGVKKMIE---DGKVGGGMIPKVNCC 320 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~--~e~~~l~~---~~~vtGGM~~Kv~aA 320 (358)
.+..+.|+|++|+++|.+++||.|+|+|||||||+++| +|+ ++|++|+. +|+..+.. .+..||||.+|+++|
T Consensus 142 ~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa 221 (368)
T PRK13402 142 DRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAA 221 (368)
T ss_pred cccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHH
Confidence 45667899999999999999999999999999999865 344 69999986 67777653 245799999999999
Q ss_pred HHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
..+.+.|++ ++|++|+.|+.| .+++.|+..||+|.+
T Consensus 222 ~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 257 (368)
T PRK13402 222 KIAMSHGIE-TFIGNGFTADIF-NQLLKGQNPGTYFTP 257 (368)
T ss_pred HHHHHcCCc-EEEEcCCCchHH-HHHhcCCCCceEEec
Confidence 999999999 899999999886 668888889999964
|
|
| >COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=271.72 Aligned_cols=241 Identities=22% Similarity=0.339 Sum_probs=197.8
Q ss_pred CeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
+++|||+|.++|++.+. ...++.++++|+.|++.|+++|||++|+..++ +..+|++. |.++-+..+.+.
T Consensus 7 ~riVvKiGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG--~~~Lg~~~------rp~~l~~kQA~A 78 (369)
T COG0263 7 RRIVVKIGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAG--RTRLGLPK------RPKTLAEKQAAA 78 (369)
T ss_pred eEEEEEECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhC--hhhcCCCC------CCcchHHHHHHH
Confidence 79999999999999742 23457899999999999999999999987665 35678775 455555555566
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecC-HHHHHHHHhCCCeEEEcCCccCCCC
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVD-PTVIEPLVNSGHIPVIASVAADEFG 249 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~-~~~I~~lL~~G~IPVi~gv~~~~~G 249 (358)
.+.+++|+..|.+.|.+||+.+ +|++.++.. + ..+.+..| .++|..||+.|.||||++...-...
T Consensus 79 AVGQ~~Lm~~y~~~f~~~g~~v-------~QiLLTr~D-----~--~~r~ry~Nar~Tl~~Ll~~gvVPIINENDtva~~ 144 (369)
T COG0263 79 AVGQVRLMQLYEELFARYGIKV-------GQILLTRDD-----F--SDRRRYLNARNTLSALLELGVVPIINENDTVATE 144 (369)
T ss_pred HhCHHHHHHHHHHHHHhcCCee-------eEEEeehhh-----h--hhHHHHHHHHHHHHHHHHCCceeeecCCCceeee
Confidence 6666789999999999999997 888776642 2 22234444 8899999999999999996544456
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccH--HHHHHHHh-C--CCCCCCcHHHHHHHH
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDI--KGVKKMIE-D--GKVGGGMIPKVNCCI 321 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~--~e~~~l~~-~--~~vtGGM~~Kv~aA~ 321 (358)
++.+.|+|++++.+|..++||.|++|||+||+|+++| +|+ ++|++++. .|++.+.. . ...||||.+|+.+|.
T Consensus 145 EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~ 224 (369)
T COG0263 145 EIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAK 224 (369)
T ss_pred eeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHH
Confidence 7899999999999999999999999999999999865 576 47777764 47777764 2 357899999999999
Q ss_pred HHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 322 RSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 322 ~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+.+.|++ +.|.+|+.|+.+ .+++.++..||+|.+
T Consensus 225 iA~~aG~~-~iI~~g~~~~~i-~~~~~~~~~GT~F~~ 259 (369)
T COG0263 225 IATRAGVP-VIIASGSKPDVI-LDALEGEAVGTLFEP 259 (369)
T ss_pred HHHHcCCc-EEEecCCCcchH-HHHHhCCCCccEEec
Confidence 99999999 999999999986 567888899999973
|
|
| >PRK12314 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=268.84 Aligned_cols=241 Identities=19% Similarity=0.251 Sum_probs=181.6
Q ss_pred CCeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEE-ECChHHHhHHHHHcCCCccccCCcccCCHHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLV-HGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLV-hGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
.+++||||||+++++++. ...+.++++.|+.++..|+++||| ||++.+++..+...+.+ .+....+.
T Consensus 9 ~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~~~---------~~~~~~~a 79 (266)
T PRK12314 9 AKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDKRP---------TSLAEKQA 79 (266)
T ss_pred CCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccccCC---------CCHHHHHH
Confidence 368999999999997641 345578999999999999999987 66677777555332221 12223444
Q ss_pred HHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC---Ccc
Q 018330 169 VSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS---VAA 245 (358)
Q Consensus 169 v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g---v~~ 245 (358)
+..+....++..|.+.|+++|+++ +|++.++. ||. ..++.....+.|+.+|+.|+|||+++ ++.
T Consensus 80 ~aa~Gq~~l~~~~~~~~~~~g~~~-------~q~llT~~-----~~~-~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~ 146 (266)
T PRK12314 80 LAAVGQPELMSLYSKFFAEYGIVV-------AQILLTRD-----DFD-SPKSRANVKNTFESLLELGILPIVNENDAVAT 146 (266)
T ss_pred HHHHhHHHHHHHHHHHHHHcCCeE-------EEEEEecc-----ccc-chHHHHHHHHHHHHHHHCCCEEEEcCCCCeee
Confidence 444445678889999999999986 56555442 221 12233445789999999999999996 334
Q ss_pred CCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccH--HHHHHHHh---CCCCCCCcHHHH
Q 018330 246 DEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDI--KGVKKMIE---DGKVGGGMIPKV 317 (358)
Q Consensus 246 ~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~--~e~~~l~~---~~~vtGGM~~Kv 317 (358)
++.+ ..+.|+|++|+++|.+|+|++|+|+|||||||+++|+ |+ ++|++|++ .+..++.. ..++||||.+|+
T Consensus 147 ~~~~-~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl 225 (266)
T PRK12314 147 DEID-TKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKL 225 (266)
T ss_pred cccc-ceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHH
Confidence 4434 3466899999999999999999999999999998654 44 57888875 44444432 234889999999
Q ss_pred HHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 318 NCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 318 ~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
++|..+.+.|++ ++|+||+.|+.| .++|+|++.||+|.+
T Consensus 226 ~aa~~a~~~gv~-v~I~~g~~~~~i-~~~l~g~~~GT~i~~ 264 (266)
T PRK12314 226 KAAKFLMEAGIK-MVLANGFNPSDI-LDFLEGESIGTLFAP 264 (266)
T ss_pred HHHHHHHHCCCe-EEEEcCCCchHH-HHHHcCCCCceEEcc
Confidence 999999999999 999999999997 678888889999975
|
|
| >PTZ00489 glutamate 5-kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=265.09 Aligned_cols=239 Identities=18% Similarity=0.238 Sum_probs=178.6
Q ss_pred CCeEEEEECCcccCCCChh--HHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQKD--NLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~~--~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
.+++|||+|||++++++.+ ..+..++++++.|++ ++++||||||+...+. ..+++...+ ....+++ .
T Consensus 8 ~~riVIKlG~Svit~~~~~~~~~~~~l~~~i~~l~~-~~~vilVssGava~g~--~~~~~~~~~-----~~~~qa~---a 76 (264)
T PTZ00489 8 VKRIVVKVGSSILVDNQEIAAHRIEALCRFIADLQT-KYEVILVTSGAVAAGY--TKKEMDKSY-----VPNKQAL---A 76 (264)
T ss_pred CCEEEEEeccceeeCCCCcCHHHHHHHHHHHHHHhc-CCeEEEEecChHhcCh--hhcCCCccc-----cHHHHHH---H
Confidence 4789999999999987532 345788888998876 7999999988844332 244544211 1122333 3
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCccccee-ecCHHHHHHHHhCCCeEEEcCCccCCCC
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVA-RVDPTVIEPLVNSGHIPVIASVAADEFG 249 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~-~i~~~~I~~lL~~G~IPVi~gv~~~~~G 249 (358)
.+.+.+||..+.+.|.++|+.+ +|++.+.. |+ ..+.+ ....+.++.||+.|.|||+++.......
T Consensus 77 aiGq~~L~~~y~~~f~~~~~~~-------aqiLlt~~-----d~--~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~ 142 (264)
T PTZ00489 77 SMGQPLLMHMYYTELQKHGILC-------AQMLLAAY-----DL--DSRKRTINAHNTIEVLISHKVIPIINENDATALH 142 (264)
T ss_pred HhCHHHHHHHHHHHHHhCCCeE-------EEeeeecc-----cc--ccchhhHHHHHHHHHHHHCCCEEEECCCCCcccc
Confidence 3334469999999999999998 45544332 11 11112 2348899999999999999996544555
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-c---ccccccHHHHHHHH--hCCCCCCCcHHHHHHHH
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-S---LVKEIDIKGVKKMI--EDGKVGGGMIPKVNCCI 321 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~---lI~~I~~~e~~~l~--~~~~vtGGM~~Kv~aA~ 321 (358)
++.|.|+|.+|+.+|..++||+|+|+|||||||+++| +|+ + .|++++.+++.... ...++||||.+|+++|.
T Consensus 143 e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~ 222 (264)
T PTZ00489 143 ELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQ 222 (264)
T ss_pred eeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHH
Confidence 7888899999999999999999999999999999754 233 2 37888887764432 23568999999999999
Q ss_pred HHHHcCCCEEEEEeCCCcchHHHHHHcCC--CCceEEcC
Q 018330 322 RSLAQGVRTASIIDGRVEHSLLLEILTDA--GAGTMITG 358 (358)
Q Consensus 322 ~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~--g~GT~I~~ 358 (358)
.+.+.|++ ++|++|+.|+.| .+++.++ ..||+|.+
T Consensus 223 ~a~~~Gi~-v~I~~g~~~~~i-~~~l~g~~~~~GT~~~~ 259 (264)
T PTZ00489 223 FLLERGGK-MYLSSGFHLEKA-RDFLIGGSHEIGTLFYP 259 (264)
T ss_pred HHHHCCCC-EEEEeCCCchHH-HHHHcCCCCCCceEEee
Confidence 99999998 999999999987 5677654 38999964
|
|
| >PRK12686 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=276.65 Aligned_cols=246 Identities=27% Similarity=0.380 Sum_probs=169.8
Q ss_pred CCeEEEEECCcccCCCCh-----hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHH-HHHcCCCccc------------
Q 018330 93 GKTIVVKYGGAAMKPNQK-----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW-LKRFGIEPVF------------ 154 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~-----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~-l~~~gi~~~~------------ 154 (358)
.+++||||||++|.+.+. .+.....+++|+.|.+.|+++||+||+||+++.. ++..+..+.+
T Consensus 2 ~~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a~ 81 (312)
T PRK12686 2 KEKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVAM 81 (312)
T ss_pred CCEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhhh
Confidence 479999999999988541 1223678999999999999999999999999954 4344444332
Q ss_pred ---cCCc------------ccCCHHHHHHHHHHHhhhhHHHHHH-------------------HHHHcCCeeEeecCCCc
Q 018330 155 ---RDGL------------RVTDANTMEIVSMVLVGRVNKSLVS-------------------LINKAGATAVGLSGMDG 200 (358)
Q Consensus 155 ---~~g~------------rvt~~~~~~~v~~vl~g~ln~~lv~-------------------~L~~~Gi~av~lsg~d~ 200 (358)
..|+ |.++.+++.+++|++ +|+...+ ...++|+....-.|..+
T Consensus 82 sqg~iGy~~~q~l~~~l~~r~~~~~v~~vvtqv~---Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~ 158 (312)
T PRK12686 82 SQGMIGYWLQNALNNELTERGIDKPVITLVTQVE---VDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGY 158 (312)
T ss_pred ccchhhHHHHHHHHHHHHhcCCCCCceEEEEEEE---ECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCe
Confidence 1122 333343444443332 1111111 11122332222222223
Q ss_pred cEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-----CccCCCCCc----cccChHHHHHHHHHHcCCCe
Q 018330 201 RLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-----VAADEFGQS----YNINADTVAGELAAALGAEK 271 (358)
Q Consensus 201 ~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-----v~~~~~G~~----~~i~sD~~Aa~lA~~L~Adk 271 (358)
..+.++|.|. +.++.+.|+.||++|+|||.++ +.. +++.. .++|+|.+|+.||.+|+||+
T Consensus 159 rrvV~sP~P~----------~ive~~~I~~Ll~~G~IpI~~GgggIPVv~-~~~~~~gv~avid~D~~Aa~LA~~L~Ad~ 227 (312)
T PRK12686 159 RRVVPSPKPQ----------EIIEHDTIRTLVDGGNIVIACGGGGIPVIR-DDNTLKGVEAVIDKDFASEKLAEQIDADL 227 (312)
T ss_pred EEeeCCCCCc----------cccCHHHHHHHHHCCCEEEEeCCCCCCeEe-cCCcEEeeecccCccHHHHHHHHHcCCCE
Confidence 3333333220 2289999999999999999874 222 23333 36799999999999999999
Q ss_pred EEEeeccccccccccccC-cccccccHHHHHHHHhCCC-CCCCcHHHHHHHHHHHHcCC-CEEEEEeCCCcchHHHHHHc
Q 018330 272 LILLTDVAGILENREDPM-SLVKEIDIKGVKKMIEDGK-VGGGMIPKVNCCIRSLAQGV-RTASIIDGRVEHSLLLEILT 348 (358)
Q Consensus 272 Li~lTDV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~-vtGGM~~Kv~aA~~al~~Gv-~~v~Ii~G~~~~~Ll~el~~ 348 (358)
|+|+|||+|||+++++|+ ++|++++.+|++.++.++. .+|||.||+++|.++++.+. .+++|++ ++.+ .+++.
T Consensus 228 LIiLTDVdGVy~~~~~p~ak~I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i-~~aL~ 303 (312)
T PRK12686 228 LIILTGVENVFINFNKPNQQKLDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQA-KEALA 303 (312)
T ss_pred EEEEeCchhhccCCCCCCCeECCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHH-HHHhC
Confidence 999999999999866666 7999999999999988765 45999999999999998754 4577776 4554 56777
Q ss_pred CCCCceEEc
Q 018330 349 DAGAGTMIT 357 (358)
Q Consensus 349 ~~g~GT~I~ 357 (358)
|+ .||+|.
T Consensus 304 G~-~GT~I~ 311 (312)
T PRK12686 304 GN-AGTHIT 311 (312)
T ss_pred CC-CCeEEe
Confidence 76 899985
|
|
| >PRK12353 putative amino acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=269.10 Aligned_cols=259 Identities=26% Similarity=0.325 Sum_probs=181.5
Q ss_pred cCCeEEEEECCcccCCCCh-----hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHH
Q 018330 92 RGKTIVVKYGGAAMKPNQK-----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~-----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~ 166 (358)
+.+++|||+||++|++++. .+.+..++++|+.|+..|+++|||||||++++..+...+....+.. ++++....
T Consensus 1 ~~~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~--~~~~~~~~ 78 (314)
T PRK12353 1 MMKKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKN--KVPAMPLD 78 (314)
T ss_pred CCcEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCC--CCCCchhH
Confidence 3589999999999999752 1234689999999999999999999999998776555444433221 44543322
Q ss_pred HHHHHHHhh----hhHHHHHHHHHHcCCeeEe--------ecCCCccE-EEeecCC--------------CCCCCCc-cc
Q 018330 167 EIVSMVLVG----RVNKSLVSLINKAGATAVG--------LSGMDGRL-FTARPSP--------------NSDKLGF-VG 218 (358)
Q Consensus 167 ~~v~~vl~g----~ln~~lv~~L~~~Gi~av~--------lsg~d~~l-l~a~~~~--------------~~~d~g~-~g 218 (358)
.+....++ .++..+...|..+|+...- +++.|..+ ..++|.+ .+.||.+ .+
T Consensus 79 -~~~a~~qg~l~~~l~~~~~~~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~ 157 (314)
T PRK12353 79 -VCGAMSQGYIGYHLQNALRNELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAG 157 (314)
T ss_pred -HHHHHHhHHHHHHHHHHHHHHHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCC
Confidence 22222233 4566788888888872111 12211112 2222211 0122222 12
Q ss_pred c-eee----------cCHHHHHHHHhCCCeEEEcCCc----cCCCCCc----cccChHHHHHHHHHHcCCCeEEEeeccc
Q 018330 219 E-VAR----------VDPTVIEPLVNSGHIPVIASVA----ADEFGQS----YNINADTVAGELAAALGAEKLILLTDVA 279 (358)
Q Consensus 219 ~-v~~----------i~~~~I~~lL~~G~IPVi~gv~----~~~~G~~----~~i~sD~~Aa~lA~~L~AdkLi~lTDV~ 279 (358)
+ .++ ++.+.|+.||++|.|||++|.+ .++++.. +++|+|++|+++|.+|+||+|+|+||||
T Consensus 158 ~~~r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvd 237 (314)
T PRK12353 158 RGYRRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVD 237 (314)
T ss_pred ceeEeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 2 222 6899999999999999999753 2233333 3589999999999999999999999999
Q ss_pred cccccccccC-cccccccHHHHHHHHhCC-CCCCCcHHHHHHHHHHH-HcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 280 GILENREDPM-SLVKEIDIKGVKKMIEDG-KVGGGMIPKVNCCIRSL-AQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 280 GV~~~~~dp~-~lI~~I~~~e~~~l~~~~-~vtGGM~~Kv~aA~~al-~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
|||+++++|+ ++|++++++|+++++..+ ..+|||.+|+++|.+++ +.+..+++|++ ++.+ .+++.|+ .||.|
T Consensus 238 GVy~~~~~~~a~~i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i-~~~l~g~-~GT~i 312 (314)
T PRK12353 238 KVYINFGKPNQKKLDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKA-KEALEGK-AGTVI 312 (314)
T ss_pred cccCCCCCCCCeECcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHH-HHHhCCC-CCeEe
Confidence 9999766665 699999999999988654 46799999999999999 44434499997 5665 5677777 89999
Q ss_pred cC
Q 018330 357 TG 358 (358)
Q Consensus 357 ~~ 358 (358)
.+
T Consensus 313 ~~ 314 (314)
T PRK12353 313 VK 314 (314)
T ss_pred cC
Confidence 75
|
|
| >cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=259.30 Aligned_cols=229 Identities=21% Similarity=0.268 Sum_probs=189.2
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHHh
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLV 174 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl~ 174 (358)
+||||||+++.+ ++..++++++|+.++..|+++|||||| |+.++.+++..+....+ .+.+.++++..+..
T Consensus 2 iViK~GGs~l~~---~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~------~~~~~~~~i~~~Ge 72 (239)
T cd04246 2 IVQKFGGTSVAD---IERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPR------PSPRELDMLLSTGE 72 (239)
T ss_pred EEEEECccccCC---HHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccC------CCHHHHHHHHHHhH
Confidence 799999999999 777789999999998889999999995 77888887766554322 14556776644322
Q ss_pred hhhHH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccCCCCCcc
Q 018330 175 GRVNK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AADEFGQSY 252 (358)
Q Consensus 175 g~ln~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~~~G~~~ 252 (358)
.+|. .+++.|+++|++++++++.+..+++..+.. .|++..++.+.+.+++++|.|||++|+ +.+++|+++
T Consensus 73 -~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~-------~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~ 144 (239)
T cd04246 73 -QISAALLAMALNRLGIKAISLTGWQAGILTDDHHG-------NARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEIT 144 (239)
T ss_pred -HHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCC-------ceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEE
Confidence 3454 589999999999999999988888765432 467778889999999999999999995 778899999
Q ss_pred cc---ChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHc
Q 018330 253 NI---NADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQ 326 (358)
Q Consensus 253 ~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~ 326 (358)
++ |+|++|+.+|.+|+|++|+|+|||||||+++| +|+ ++|++|+++|+++++.. |.+..|..++..+.+.
T Consensus 145 ~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~----G~~~~~~~a~~~a~~~ 220 (239)
T cd04246 145 TLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASL----GAKVLHPRSVELAKKY 220 (239)
T ss_pred ecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHhC----CCcccCHHHHHHHHHC
Confidence 98 89999999999999999999999999998754 233 69999999999998754 5677888899999999
Q ss_pred CCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 327 GVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 327 Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
|++ ++|.|++.| + .||+|+
T Consensus 221 gi~-i~i~~~~~~----------~-~gt~i~ 239 (239)
T cd04246 221 NVP-LRVRSSFSE----------N-PGTLIT 239 (239)
T ss_pred CCe-EEEecCCCC----------C-CCcEeC
Confidence 999 999998665 3 588874
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati |
| >cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=257.68 Aligned_cols=230 Identities=23% Similarity=0.323 Sum_probs=187.8
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVL 173 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl 173 (358)
.+||||||+++.+ ++.+.+++++|..++..|+++|||||| |..++.+++...... +.++..+++++...
T Consensus 1 ~iViK~GGs~l~~---~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~------~~~~~~~~~~i~a~- 70 (239)
T cd04261 1 LIVQKFGGTSVAS---IERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEIS------PRPPARELDVLLST- 70 (239)
T ss_pred CEEEEECCcccCC---HHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhc------cCCCHHHHHHHHHH-
Confidence 3799999999998 777789999999998899999999998 666666654321111 34566667665332
Q ss_pred hhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccCCCCCc
Q 018330 174 VGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AADEFGQS 251 (358)
Q Consensus 174 ~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~~~G~~ 251 (358)
...+|.. +.+.|+++|++++++++.+..+++...+. .|++..++.+.++.+++.|.|||++|+ +.+++|++
T Consensus 71 Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~-------~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~ 143 (239)
T cd04261 71 GEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHG-------KARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDI 143 (239)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCC-------cceechhhHHHHHHHHHcCCeEEEcCccccCCCCCE
Confidence 2356665 78899999999999999998888765421 567777889999999999999999996 78899999
Q ss_pred ccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 018330 252 YNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLA 325 (358)
Q Consensus 252 ~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~ 325 (358)
+++ |+|++|+.+|.+|+|++|+++|||||||+++|+ |+ ++|++|+++|+++++.. |.+..|..++..+.+
T Consensus 144 ~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~----G~~~~~~~a~~~~~~ 219 (239)
T cd04261 144 TTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASL----GAKVLHPRSVELAKK 219 (239)
T ss_pred EecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhc----cccccCHHHHHHHHH
Confidence 999 999999999999999999999999999987542 33 69999999999998753 557788889888889
Q ss_pred cCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 326 QGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 326 ~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.|++ ++|.|+..| + .||+|+
T Consensus 220 ~~i~-i~I~n~~~~----------~-~gt~i~ 239 (239)
T cd04261 220 YGVP-LRVLSSFSE----------E-PGTLIT 239 (239)
T ss_pred cCCe-EEEecCCCC----------C-CCcEeC
Confidence 9999 999998765 3 688874
|
In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and |
| >TIGR01027 proB glutamate 5-kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=273.96 Aligned_cols=240 Identities=20% Similarity=0.311 Sum_probs=178.3
Q ss_pred CeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
+++|||+||+++++++. ...+..++++|+.++..|+++|||||||... .+..++++.... ++...+++..
T Consensus 1 ~riVIKiGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~~~--g~~~lg~~~~~~---~l~~~qa~aa-- 73 (363)
T TIGR01027 1 QRIVVKVGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGAIAA--GFEALGLPERPK---TLAEKQALAA-- 73 (363)
T ss_pred CeEEEEeccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHHhc--CccccCCCCCcc---chHHHHHHHH--
Confidence 47999999999999653 2345788999999999999999999998543 234455553211 1222333333
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecC-HHHHHHHHhCCCeEEEcC-CccCCC
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVD-PTVIEPLVNSGHIPVIAS-VAADEF 248 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~-~~~I~~lL~~G~IPVi~g-v~~~~~ 248 (358)
+.+..++..+.+.|.++|+++ +|++.++. |+ ..+.+..+ .+.|..||++|.|||+++ .... .
T Consensus 74 -~Gq~~l~~~~~~~l~~~Gi~~-------aqillt~~-----d~--~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~-~ 137 (363)
T TIGR01027 74 -VGQVRLMQLYEQLFSQYGIKV-------AQILLTRA-----DF--SDRERYLNARNTLEALLELGVVPIINENDTVA-T 137 (363)
T ss_pred -hChHHHHHHHHHHHHHcCCeE-------EEEEEecc-----ch--hhHHHHHHHHHHHHHHHhCCCEEEEeCCCcee-e
Confidence 333467889999999999997 44443332 11 11112333 488999999999999995 2221 1
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHH--HHHHHHh---CCCCCCCcHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIK--GVKKMIE---DGKVGGGMIPKVNCC 320 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~--e~~~l~~---~~~vtGGM~~Kv~aA 320 (358)
.+..+.|+|++|+.+|.+|+||+|+|+|||||||+++| +|+ ++|++++.. ++..+.. .++++|||.+|+++|
T Consensus 138 ~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa 217 (363)
T TIGR01027 138 EEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAA 217 (363)
T ss_pred eecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHH
Confidence 23446799999999999999999999999999999865 465 699999863 4444542 347899999999999
Q ss_pred HHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
..+.+.|++ ++|+||+.|+.| .++++|+.+||+|.+
T Consensus 218 ~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 253 (363)
T TIGR01027 218 DLATRAGVP-VIIASGSKPEKI-ADALEGAPVGTLFHA 253 (363)
T ss_pred HHHHHCCCe-EEEEeCCCccHH-HHHhcCCCCcEEEee
Confidence 999999999 999999999886 678898889999964
|
Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family. |
| >cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=253.21 Aligned_cols=230 Identities=24% Similarity=0.361 Sum_probs=184.3
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEE-----CChHHHhHHHHHcCCCccccCCcccCCHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVH-----GGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIV 169 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVh-----Ggg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v 169 (358)
.+||||||+++++ ++..++++++|+.+.+.|+++|||| |||++++..+..++.. .|++++.. .++.+
T Consensus 1 ~~ViK~GGs~l~~---~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~----~~~~~t~~-~~~~~ 72 (244)
T cd04260 1 IIVQKFGGTSVST---KERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYA----ENSDISPR-ELDLL 72 (244)
T ss_pred CEEEEECchhcCC---HHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHh----hcCCCCHH-HHHHH
Confidence 3799999999999 7667899999999988899877777 5666776655544322 24566664 56666
Q ss_pred HHHHhhhhHH--HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccC
Q 018330 170 SMVLVGRVNK--SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AAD 246 (358)
Q Consensus 170 ~~vl~g~ln~--~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~ 246 (358)
.+ .|+++. .+++.|+++|++++++++.|..+++...++ .|++..++.+.+..+|+.|.|||++|+ +.+
T Consensus 73 ~~--~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~-------~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~ 143 (244)
T cd04260 73 MS--CGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYS-------NAKIIKVNPKKILSALKEGDVVVVAGFQGVT 143 (244)
T ss_pred HH--HhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCCCC-------ceeeeccCHHHHHHHHhCCCEEEecCCcccC
Confidence 33 577766 599999999999999999999998866432 467778899999999999999999995 788
Q ss_pred CCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--c-CcccccccHHHHHHHHhCCCCCCCcHHHHHHH
Q 018330 247 EFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--P-MSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCC 320 (358)
Q Consensus 247 ~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p-~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA 320 (358)
++|+.+++ ++|++|+.+|.+|+|++++|+|||||||+++|+ | .++|++|+++|+++++..|. -..|..++
T Consensus 144 ~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~----~v~~~~a~ 219 (244)
T cd04260 144 EDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGA----KVIHPRAV 219 (244)
T ss_pred CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCc----hhcCHHHH
Confidence 89999998 699999999999999999999999999987542 3 37999999999999986532 13445566
Q ss_pred HHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
..+.+.+++ ++|.|++.| + .||+|+
T Consensus 220 ~~~~~~~i~-v~I~~~~~~----------~-~gt~i~ 244 (244)
T cd04260 220 EIAMQANIP-IRIRSTMSE----------N-PGTLIT 244 (244)
T ss_pred HHHHHcCCe-EEEecCCCC----------C-CCCEeC
Confidence 666677888 999997654 3 588874
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet |
| >TIGR00746 arcC carbamate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-32 Score=259.74 Aligned_cols=252 Identities=24% Similarity=0.334 Sum_probs=171.5
Q ss_pred CeEEEEECCcccCCCC-h------hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHH
Q 018330 94 KTIVVKYGGAAMKPNQ-K------DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~-~------~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~ 166 (358)
|++|||+||++|.++. . .+....++++|+.|.+.|+++|||||||++++....+....+ ..+...-+
T Consensus 1 ~riViklGgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~------~~~~~~p~ 74 (310)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAAD------SEVPAMPL 74 (310)
T ss_pred CeEEEEECHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhcccccc------ccCCCCcc
Confidence 6899999999998642 1 123467899999999999999999999999986654322111 11111112
Q ss_pred HHHHHHHhhhhHHHHHHHHH----HcCCeeEeecCCCccEEEeecCC---CCC---------------------------
Q 018330 167 EIVSMVLVGRVNKSLVSLIN----KAGATAVGLSGMDGRLFTARPSP---NSD--------------------------- 212 (358)
Q Consensus 167 ~~v~~vl~g~ln~~lv~~L~----~~Gi~av~lsg~d~~ll~a~~~~---~~~--------------------------- 212 (358)
+.+....+|.+...|..+|+ ++|+.. .+...-.|++.+...+ ++.
T Consensus 75 ~~~~A~~qg~lg~~~~~~l~~~l~~~g~~~-~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~ 153 (310)
T TIGR00746 75 DVLGAMSQGMIGYMLQQALNNELPKRGMEK-PVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDA 153 (310)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHhcCCCc-cceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecC
Confidence 33333334455555555554 777532 1111113333332110 000
Q ss_pred CCCcc------cceeecCHHHHHHHHhCCCeEEEcCCc----cCCCC----CccccChHHHHHHHHHHcCCCeEEEeecc
Q 018330 213 KLGFV------GEVARVDPTVIEPLVNSGHIPVIASVA----ADEFG----QSYNINADTVAGELAAALGAEKLILLTDV 278 (358)
Q Consensus 213 d~g~~------g~v~~i~~~~I~~lL~~G~IPVi~gv~----~~~~G----~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV 278 (358)
.++|. -.+..++.+.|+.||++|.|+|.++-+ ..+++ ..+++|+|.+|+.+|.+|+||+|||+|||
T Consensus 154 ~~~~rrvv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDV 233 (310)
T TIGR00746 154 GRGWRRVVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDV 233 (310)
T ss_pred CCcceEeecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 00110 001247899999999999854444321 12333 33489999999999999999999999999
Q ss_pred ccccccccccC-cccccccHHHHHHHHhCC-CCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 279 AGILENREDPM-SLVKEIDIKGVKKMIEDG-KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 279 ~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~-~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
||||+++++|+ ++|++++.+|++++...+ ..+|||.+|+++|+++++.|+.+++|++ ++.| .+++.|+ .||+|
T Consensus 234 dGVy~~~~~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i-~~~l~G~-~GT~I 308 (310)
T TIGR00746 234 DAVYINYGKPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENA-VEALEGK-AGTRV 308 (310)
T ss_pred CceeCCCCCCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHH-HHHHCCC-CCcEE
Confidence 99999866666 699999999999998655 4579999999999999999888899997 5565 6788888 99998
Q ss_pred c
Q 018330 357 T 357 (358)
Q Consensus 357 ~ 357 (358)
.
T Consensus 309 ~ 309 (310)
T TIGR00746 309 T 309 (310)
T ss_pred e
Confidence 6
|
The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff. |
| >PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=254.59 Aligned_cols=246 Identities=26% Similarity=0.358 Sum_probs=179.9
Q ss_pred CeEEEEECCcccCCCCh----h-H--HHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccc-c--CCcccCCH
Q 018330 94 KTIVVKYGGAAMKPNQK----D-N--LLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVF-R--DGLRVTDA 163 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----~-~--l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~-~--~g~rvt~~ 163 (358)
+++||+|||++|..++. + + .....++.|+.+.+.|+++||+||+|||++.++.+....... . --+.+...
T Consensus 3 ~~ivvalgGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~a 82 (313)
T PRK12454 3 KRIVIALGGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAGA 82 (313)
T ss_pred ceEEEEeChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhhh
Confidence 69999999999987431 1 1 335678899999999999999999999999776543221110 0 00222223
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHH---------------------------------------------HcCCeeEeecCC
Q 018330 164 NTMEIVSMVLVGRVNKSLVSLIN---------------------------------------------KAGATAVGLSGM 198 (358)
Q Consensus 164 ~~~~~v~~vl~g~ln~~lv~~L~---------------------------------------------~~Gi~av~lsg~ 198 (358)
.+.-.+...+. ..|...|. ++|+..+.-.|.
T Consensus 83 ~sqG~igy~l~----~al~~~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~ 158 (313)
T PRK12454 83 MTQGWIGYMIQ----QALRNELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGR 158 (313)
T ss_pred hhhHHHHHHHH----HHHHHHHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCC
Confidence 33222222211 12223333 345555555565
Q ss_pred CccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCc----cCCCCCccc----cChHHHHHHHHHHcCCC
Q 018330 199 DGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVA----ADEFGQSYN----INADTVAGELAAALGAE 270 (358)
Q Consensus 199 d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~----~~~~G~~~~----i~sD~~Aa~lA~~L~Ad 270 (358)
.++.++++|.| +..++.+.|+.||++|.|||++|.+ ++.+|+.++ +|+|.+|+.+|.+|+||
T Consensus 159 g~RrvV~SP~P----------~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD 228 (313)
T PRK12454 159 GWRRVVPSPDP----------LGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNAD 228 (313)
T ss_pred ceEEEeCCCCC----------ccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCC
Confidence 66666666654 2457899999999999999999643 566776665 57899999999999999
Q ss_pred eEEEeeccccccccccccC-cccccccHHHHHHHHhCCC-CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHc
Q 018330 271 KLILLTDVAGILENREDPM-SLVKEIDIKGVKKMIEDGK-VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILT 348 (358)
Q Consensus 271 kLi~lTDV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~-vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~ 348 (358)
+|+|+|||+|||+++++|+ ++|++++.+|+++++..+. .+|||.+|+++|+++++.|+.+++|++ ++.+ .+++.
T Consensus 229 ~LIiLTdVdGVy~~~~~p~~~~i~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i-~~aL~ 304 (313)
T PRK12454 229 IFIILTDVEKVYLNYGKPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKA-VEALE 304 (313)
T ss_pred EEEEEeCCceeeCCCCCCCCeEccccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHH-HHHHC
Confidence 9999999999999866676 6999999999999987654 569999999999999999988899986 4554 56777
Q ss_pred CCCCceEEcC
Q 018330 349 DAGAGTMITG 358 (358)
Q Consensus 349 ~~g~GT~I~~ 358 (358)
|+ .||+|.+
T Consensus 305 G~-~GT~I~~ 313 (313)
T PRK12454 305 GK-TGTRIIP 313 (313)
T ss_pred CC-CCeEeCC
Confidence 76 8999975
|
|
| >cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=247.06 Aligned_cols=243 Identities=28% Similarity=0.361 Sum_probs=175.2
Q ss_pred eEEEEECCcccCCCCh-------hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccc--cCCcccCCHHH
Q 018330 95 TIVVKYGGAAMKPNQK-------DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVF--RDGLRVTDANT 165 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~-------~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~--~~g~rvt~~~~ 165 (358)
++||||||++|..++. .+.....++.|+.+.+.|++++||||+|||++.++........- ..++.+...++
T Consensus 1 rivialgGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~~ 80 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMS 80 (308)
T ss_pred CEEEEecHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcchh
Confidence 5899999999976431 12346789999999999999999999999999877653322100 12344445555
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHcCCee---------------------------------------------EeecCCCc
Q 018330 166 MEIVSMVLVGRVNKSLVSLINKAGATA---------------------------------------------VGLSGMDG 200 (358)
Q Consensus 166 ~~~v~~vl~g~ln~~lv~~L~~~Gi~a---------------------------------------------v~lsg~d~ 200 (358)
+-.+..++ ...|...|.++|++. +.-.+..+
T Consensus 81 ~G~ig~~~----~~al~~~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~ 156 (308)
T cd04235 81 QGMIGYML----QQALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGY 156 (308)
T ss_pred hHHHHHHH----HHHHHHHHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCc
Confidence 44443332 234555666666542 11111112
Q ss_pred cEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-----CccCCCCCc----cccChHHHHHHHHHHcCCCe
Q 018330 201 RLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-----VAADEFGQS----YNINADTVAGELAAALGAEK 271 (358)
Q Consensus 201 ~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-----v~~~~~G~~----~~i~sD~~Aa~lA~~L~Adk 271 (358)
+.++++|.| +..++.+.|+.||++|+|||++| +..+ ++.. .++|+|++|+++|.+|+||+
T Consensus 157 rrvV~SP~P----------~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~-~~~~~gveaVid~D~~AallA~~l~Ad~ 225 (308)
T cd04235 157 RRVVPSPKP----------KDIVEIEAIKTLVDNGVIVIAAGGGGIPVVRE-GGGLKGVEAVIDKDLASALLAEEINADL 225 (308)
T ss_pred eeeeCCCCC----------ccccCHHHHHHHHHCCCEEEEECCCccCEEEc-CCceeeeeeccCccHHHHHHHHHcCCCE
Confidence 333333332 13467899999999999999995 3333 2433 35799999999999999999
Q ss_pred EEEeeccccccccccccC-cccccccHHHHHHHHhCCC-CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcC
Q 018330 272 LILLTDVAGILENREDPM-SLVKEIDIKGVKKMIEDGK-VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTD 349 (358)
Q Consensus 272 Li~lTDV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~-vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~ 349 (358)
|+|+|||||||+++++|+ ++|++++++|+.+++.++. .+|||.+|+++|+++++.|..+++|.+ ++.+ .+++.|
T Consensus 226 LiilTdVdGVy~~~~~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i-~~aL~G 301 (308)
T cd04235 226 LVILTDVDNVYINFGKPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITS---LENA-EAALEG 301 (308)
T ss_pred EEEEecCCeEECCCCCCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECC---HHHH-HHHHCC
Confidence 999999999999876675 6999999999999987664 579999999999999999767788876 5555 567777
Q ss_pred CCCceEEc
Q 018330 350 AGAGTMIT 357 (358)
Q Consensus 350 ~g~GT~I~ 357 (358)
+ .||+|.
T Consensus 302 ~-~GT~I~ 308 (308)
T cd04235 302 K-AGTVIV 308 (308)
T ss_pred C-CCeEEC
Confidence 6 899984
|
Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK). |
| >PRK00358 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=234.26 Aligned_cols=222 Identities=19% Similarity=0.296 Sum_probs=165.9
Q ss_pred CeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHH-cCCCccccCCcccCCHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKR-FGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~-~gi~~~~~~g~rvt~~~~~~~ 168 (358)
+++||||||+++++++ ..+.+.+++++|+.++..|+++|||||||++++.+... .+++ ...++.
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~~~~~~-----------~~~~~~ 69 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGMD-----------RATADY 69 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHhhcCCC-----------hhhHHH
Confidence 4799999999999643 24556789999999988899999999999888765421 2221 123444
Q ss_pred HHHHHhhhhHH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCC
Q 018330 169 VSMVLVGRVNK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247 (358)
Q Consensus 169 v~~vl~g~ln~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~ 247 (358)
+.+ +..++|. .+.+.|+++|+++.-+++ .. +++.+. ....+.+..+|++|.|||+++..
T Consensus 70 ~~~-~~~~l~~~ll~~~l~~~Gi~a~~~~~--------~~------~~~~~~--~~~~~~~~~~l~~g~vPVv~g~~--- 129 (231)
T PRK00358 70 MGM-LATVMNALALQDALERAGVDTRVQSA--------IP------MPQVAE--PYIRRRAIRHLEKGRVVIFAAGT--- 129 (231)
T ss_pred HHH-HHHHHHHHHHHHHHHHcCCCeEEech--------hh------cccccC--cccHHHHHHHHHCCCEEEEECCC---
Confidence 444 3567888 588899999998753322 11 111121 12356788999999999998631
Q ss_pred CCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 018330 248 FGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSL 324 (358)
Q Consensus 248 ~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al 324 (358)
|.. +.++|++|+++|.+|+|++|+|+|||||||+++| +|+ ++|++|+++|+.++ |....++.++..+.
T Consensus 130 -~~~-~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~d~~a~~~a~ 200 (231)
T PRK00358 130 -GNP-FFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEK-------GLKVMDATAISLAR 200 (231)
T ss_pred -CCC-CCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHc-------CCcchhHHHHHHHH
Confidence 222 4589999999999999999999999999999754 244 69999999886654 33445777777777
Q ss_pred HcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 325 AQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 325 ~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.|++ ++|+||+.|+.| .++++|+..||+|.
T Consensus 201 ~~~i~-v~I~~g~~~~~l-~~~l~g~~~GT~i~ 231 (231)
T PRK00358 201 DNKIP-IIVFNMNKPGNL-KRVVKGEHIGTLVS 231 (231)
T ss_pred HcCCc-EEEECCCCchHH-HHHHCCCCCCEEeC
Confidence 88998 999999999997 66888888999984
|
|
| >cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=237.88 Aligned_cols=217 Identities=21% Similarity=0.295 Sum_probs=174.3
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHHh
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLV 174 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl~ 174 (358)
++|+||||+++.+ ++.+..++++|..+ ..|+++||||||+..++..+..+. .++..
T Consensus 1 ~iViK~GGs~l~~---~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~--------------------~~~s~ 56 (227)
T cd04234 1 MVVQKFGGTSVAS---AERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA--------------------LLLSF 56 (227)
T ss_pred CEEEEECccccCC---HHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH--------------------HHHHH
Confidence 4799999999999 76778999999998 889999999999887766655432 12223
Q ss_pred hh-hHH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhC-CCeEEEcC-CccCCCCC
Q 018330 175 GR-VNK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNS-GHIPVIAS-VAADEFGQ 250 (358)
Q Consensus 175 g~-ln~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~-G~IPVi~g-v~~~~~G~ 250 (358)
|+ +|. .+.+.|+++|+++.++++.+..+.... +++++++..++.+.++.+++. |.|||++| ++.+++|+
T Consensus 57 Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~ 129 (227)
T cd04234 57 GERLSARLLAAALRDRGIKARSLDARQAGITTDD-------NHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGE 129 (227)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCC-------ccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCC
Confidence 33 344 468899999999999998776665432 335667777889999999999 99999999 67888899
Q ss_pred cccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--c-CcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 018330 251 SYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--P-MSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSL 324 (358)
Q Consensus 251 ~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p-~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al 324 (358)
++++ ++|++|+.+|.+|+|++|+|+|||||||+.+|. | .++|++++++|+++++..| .+.| +.+++..+.
T Consensus 130 ~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~G--~~~~--~~~a~~~a~ 205 (227)
T cd04234 130 ITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAYFG--AKVL--HPRAVEPAR 205 (227)
T ss_pred EEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHHhCC--cccc--CHHHHHHHH
Confidence 8887 799999999999999999999999999986542 3 3699999999999997653 3445 556777777
Q ss_pred HcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 325 AQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 325 ~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.|++ ++|.|+..|+ ..||+|.
T Consensus 206 ~~~i~-i~i~~~~~~~----------~~gT~I~ 227 (227)
T cd04234 206 KANIP-IRVKNTFNPE----------APGTLIT 227 (227)
T ss_pred HcCCe-EEEEeCCCCC----------CCCCEeC
Confidence 88998 9999988764 2489874
|
AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd |
| >KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=234.35 Aligned_cols=247 Identities=23% Similarity=0.296 Sum_probs=185.4
Q ss_pred CeEEEEECCcccCCCCh--hH--HHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCC--CccccCCcccCC-HHHH
Q 018330 94 KTIVVKYGGAAMKPNQK--DN--LLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGI--EPVFRDGLRVTD-ANTM 166 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~--~~--l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi--~~~~~~g~rvt~-~~~~ 166 (358)
+++|||+|.+++++++. +. .+..+++++++|+..|++++||.+||.+.+....++.+ ...+.+-++..+ -...
T Consensus 10 ~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~~~l~e~ 89 (285)
T KOG1154|consen 10 YRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQSELAEK 89 (285)
T ss_pred eEEEEEecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhhhHHHhhhhhccchhHHHhhCCccchhhH
Confidence 69999999999999762 11 23689999999999999999999999877643222222 223322222211 1112
Q ss_pred HHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccce-eecCHHHHHHHHhCCCeEEEcCC-c
Q 018330 167 EIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEV-ARVDPTVIEPLVNSGHIPVIASV-A 244 (358)
Q Consensus 167 ~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v-~~i~~~~I~~lL~~G~IPVi~gv-~ 244 (358)
+.+..+.++.|+..|..+|.|+|+.. +|++.+++... .+- +..-.++|.+||..|.|||++.. +
T Consensus 90 rA~AAvGQ~~Lmalye~lF~Qy~~~i-------AQvLvT~~Di~-------d~~~r~Nl~~Ti~eLL~m~viPIvNeNDa 155 (285)
T KOG1154|consen 90 RACAAVGQSGLMALYETLFTQYGITI-------AQVLVTRNDIL-------DEQQRKNLQNTISELLSMNVIPIVNENDA 155 (285)
T ss_pred HHHHHhCcchHHHHHHHHHHHhccch-------heeeecCcchh-------hHHHHHHHHHHHHHHHhCCceeeecCCCc
Confidence 33445566789999999999999997 78888876321 111 23347899999999999999984 3
Q ss_pred cCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cCcccccccHHHHHHHHh----CCCCCCCcHH
Q 018330 245 ADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PMSLVKEIDIKGVKKMIE----DGKVGGGMIP 315 (358)
Q Consensus 245 ~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~~lI~~I~~~e~~~l~~----~~~vtGGM~~ 315 (358)
.+. -++.+. |+|++|+.+|..++||.||++|||+|+|++||| |..+|+..+..+-..-.. +...||||..
T Consensus 156 vs~-~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~t 234 (285)
T KOG1154|consen 156 VSP-REIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDADPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMET 234 (285)
T ss_pred cCC-cccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCCcceeeeeeccCCCCCccccCccCccCcCcchh
Confidence 332 233444 599999999999999999999999999998764 446888888765442221 2347899999
Q ss_pred HHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 316 KVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 316 Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
||.+|..|+..||. |.|++|..|.++ ..++.+..+||.|+
T Consensus 235 Kv~AA~~A~~~Gv~-viI~~g~~p~~I-~~iv~g~kvgt~f~ 274 (285)
T KOG1154|consen 235 KVKAAVNALNAGVS-VIITNGDAPENI-TDIVEGKKVGTFFE 274 (285)
T ss_pred hHHHHHHHhcCCce-EEEeCCCChHHH-HHHHhhhhhhhhhh
Confidence 99999999999999 999999999986 77888888999875
|
|
| >PRK08210 aspartate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=253.37 Aligned_cols=223 Identities=22% Similarity=0.291 Sum_probs=177.2
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEE-----CChHHHhHHHHHcCCCccccCCcccCCHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVH-----GGGPEINFWLKRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVh-----Ggg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
+++||||||+++++ ++...+++++|+.+.+.|+++|||| ||+++++..+..+..... +.++..+++.
T Consensus 2 ~~iViK~GGs~l~~---~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~-----~~~~~~~~~~ 73 (403)
T PRK08210 2 KIIVQKFGGTSVST---EERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEF-----SEISKREQDL 73 (403)
T ss_pred CeEEEeECCcccCC---HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhc-----cCCChHHHHH
Confidence 58999999999999 6667889999999999999988888 444556555544332211 2345555655
Q ss_pred HHHHHhhhhHHH--HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-cc
Q 018330 169 VSMVLVGRVNKS--LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AA 245 (358)
Q Consensus 169 v~~vl~g~ln~~--lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~ 245 (358)
+ ++.|+++.. +.+.|+++|++++++++.+..+++..... .+++..++.+.|..+++.|.|||++|+ +.
T Consensus 74 l--~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~-------~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~ 144 (403)
T PRK08210 74 L--MSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFT-------NAKIIEVNPDRILEALEEGDVVVVAGFQGV 144 (403)
T ss_pred H--HhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCC-------ceeeehhhHHHHHHHHhcCCEEEeeCeeec
Confidence 4 456888875 78999999999999999988888876432 366777889999999999999999996 78
Q ss_pred CCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--c-CcccccccHHHHHHHHhCCCCCCCcHHHHHH
Q 018330 246 DEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--P-MSLVKEIDIKGVKKMIEDGKVGGGMIPKVNC 319 (358)
Q Consensus 246 ~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p-~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~a 319 (358)
+.+|+++++ ++|++|+.+|.+|+|++++|+|||||||+.+|. | .++|++|+++|+.+++..|. -..+.++
T Consensus 145 ~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~----~v~~~~a 220 (403)
T PRK08210 145 TENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGA----KVIHPRA 220 (403)
T ss_pred CCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCc----cccCHHH
Confidence 889999888 799999999999999999999999999987542 3 36999999999999987542 2234456
Q ss_pred HHHHHHcCCCEEEEEeCCC
Q 018330 320 CIRSLAQGVRTASIIDGRV 338 (358)
Q Consensus 320 A~~al~~Gv~~v~Ii~G~~ 338 (358)
+..+.+.+++ ++|.|...
T Consensus 221 ~~~~~~~~i~-i~i~~~~~ 238 (403)
T PRK08210 221 VEIAMQANIP-LRIRSTYS 238 (403)
T ss_pred HHHHHHCCCe-EEEEecCC
Confidence 6666677888 99998764
|
|
| >cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=235.52 Aligned_cols=217 Identities=22% Similarity=0.344 Sum_probs=162.4
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHH---HHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWL---KRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l---~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
..+|||+|||++++|+.+ .+..++++|+.+.. +++++||||||++++.+. ..+|++. ...+.+.
T Consensus 31 ~~~ViKiGGSvitdk~~~-~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~-----------~~~~~~~ 97 (262)
T cd04255 31 DLNVVKIGGQSIIDRGAE-AVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPT-----------GVLAKLG 97 (262)
T ss_pred CcEEEEeccceecCCcHH-HHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCc-----------hHHHHHH
Confidence 469999999999997643 45789999998865 789999999999986433 1333322 1222333
Q ss_pred HHHhhhhHHHHH-HHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCc---c-
Q 018330 171 MVLVGRVNKSLV-SLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVA---A- 245 (358)
Q Consensus 171 ~vl~g~ln~~lv-~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~---~- 245 (358)
+. +.++|..+. ++|..+|++++ ...+.+.++.+|+.|.|||++|.. .
T Consensus 98 ~a-a~~ln~lv~~~~l~~~g~~~i---------------------------~~~~~~~l~~lL~~g~vPVi~g~~~~~~~ 149 (262)
T cd04255 98 AS-VSEQNAEMLATLLAKHGGSKV---------------------------GHGDLLQLPTFLKAGRAPVISGMPPYGLW 149 (262)
T ss_pred HH-HHHHHHHHHHHHHHHcCCCcc---------------------------ccccHHHHHHHHHCCCeEEEeCCcCCCee
Confidence 33 456787766 56678887652 112345799999999999999952 1
Q ss_pred ---CCCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--cc-CcccccccHHHHHHHH-hCCCCCCCcHHHHH
Q 018330 246 ---DEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DP-MSLVKEIDIKGVKKMI-EDGKVGGGMIPKVN 318 (358)
Q Consensus 246 ---~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp-~~lI~~I~~~e~~~l~-~~~~vtGGM~~Kv~ 318 (358)
+..|+..++|+|++|+++|.+|+|++|+++|||||||+++| +| .++|++|+++|+.++. ....+++||..|++
T Consensus 150 ~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~ 229 (262)
T cd04255 150 EHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQ 229 (262)
T ss_pred eecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCCCCCcHHHHHHHH
Confidence 23455778999999999999999999999999999999754 23 3799999998888875 33345778888876
Q ss_pred HHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 319 CCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 319 aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+| .++..++|+||+.|++| .+++.++.+||+|.
T Consensus 230 aa-----~~~~~v~I~~g~~~~~L-~~~l~g~~~GT~i~ 262 (262)
T cd04255 230 NA-----RHVKEVQIVNGLVPGNL-TRALRGEHVGTIIR 262 (262)
T ss_pred Hh-----CCCCcEEEEeCCCCCHH-HHHHcCCCCceEeC
Confidence 54 23234999999999986 67888888999984
|
The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). |
| >PRK12354 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=238.83 Aligned_cols=243 Identities=25% Similarity=0.301 Sum_probs=164.6
Q ss_pred CeEEEEECCcccCCCCh---hH----HHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHH---HcCCCccccCCcccCCH
Q 018330 94 KTIVVKYGGAAMKPNQK---DN----LLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLK---RFGIEPVFRDGLRVTDA 163 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~---~~----l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~---~~gi~~~~~~g~rvt~~ 163 (358)
+++||||||++|.+++. .+ .....++.|+.+.+ |+++||+||+|||++.++. ++...+.+ .+.+...
T Consensus 1 ~~iVialGGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~--pl~~~~a 77 (307)
T PRK12354 1 MRIVVALGGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYKDVTPY--PLDVLGA 77 (307)
T ss_pred CeEEEEeccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhcCCCCC--Ccchhcc
Confidence 47999999999998652 11 22467888888876 9999999999999774432 22221111 1111111
Q ss_pred HH----HHHHHHHHhhhh-----H---------------------------H-HHHHHHHHcCCeeEeecCCCccEEEee
Q 018330 164 NT----MEIVSMVLVGRV-----N---------------------------K-SLVSLINKAGATAVGLSGMDGRLFTAR 206 (358)
Q Consensus 164 ~~----~~~v~~vl~g~l-----n---------------------------~-~lv~~L~~~Gi~av~lsg~d~~ll~a~ 206 (358)
.+ --.+++.+..++ + . .-.++..++|+..+.- |..++.++++
T Consensus 78 ~sqg~iGy~l~q~l~~~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~d-g~g~rrVv~S 156 (307)
T PRK12354 78 ETEGMIGYMLEQELGNLLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPD-GDYFRRVVPS 156 (307)
T ss_pred cccchHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeec-CCceEEEecC
Confidence 00 000111111111 0 0 1112223345543332 4445556655
Q ss_pred cCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEc-----CCccCCCCCcc----ccChHHHHHHHHHHcCCCeEEEeec
Q 018330 207 PSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIA-----SVAADEFGQSY----NINADTVAGELAAALGAEKLILLTD 277 (358)
Q Consensus 207 ~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~-----gv~~~~~G~~~----~i~sD~~Aa~lA~~L~AdkLi~lTD 277 (358)
|.+. ..++.+.|+.||++|+|||.+ |+..+.+++.. ++|+|.+|+.||.+|+||+|+|+||
T Consensus 157 P~P~----------~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTd 226 (307)
T PRK12354 157 PRPK----------RIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTD 226 (307)
T ss_pred CCCc----------ceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeC
Confidence 5441 357899999999999998776 44444434443 4699999999999999999999999
Q ss_pred cccccccccccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 278 VAGILENREDPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 278 V~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
|||||+++++|+ ++|++++.+|++++ +..+|||.||+++|+++++.|..+++|.+ ++.+ .++|.|+ .||+|
T Consensus 227 VdGVy~~~~~p~~k~i~~it~~e~~~~---~f~~GgM~pKV~AA~~~~~~gg~~viI~~---~~~l-~~al~G~-~GT~I 298 (307)
T PRK12354 227 VDAVYLDWGKPTQRAIAQATPDELREL---GFAAGSMGPKVEAACEFVRATGKIAGIGS---LEDI-QAILAGE-AGTRI 298 (307)
T ss_pred CcceecCCCCCCCeECCCCCHHHHHhh---CCCcCChHHHHHHHHHHHHhCCCEEEECC---HHHH-HHHHCCC-CceEE
Confidence 999999876776 69999999999988 57899999999999999998877788853 4454 6778775 89999
Q ss_pred cC
Q 018330 357 TG 358 (358)
Q Consensus 357 ~~ 358 (358)
.+
T Consensus 299 ~~ 300 (307)
T PRK12354 299 SP 300 (307)
T ss_pred ec
Confidence 63
|
|
| >cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=230.95 Aligned_cols=221 Identities=18% Similarity=0.239 Sum_probs=165.0
Q ss_pred eEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHH-hHHHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEI-NFWLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i-~~~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
++||||||+++++++. .+.+..+++.|+.++..|+++|||||||.++ +.....+++.+. ....+.+.
T Consensus 1 ~iViKiGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~~~~~~~--------~~~~~~~~- 71 (229)
T cd04239 1 RIVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPRA--------TADYIGML- 71 (229)
T ss_pred CEEEEECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhhcCCChh--------hHHHHHHH-
Confidence 5799999999999752 2445788888888888899999999998864 443334443321 11222222
Q ss_pred HHHhhhhHHHH-HHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCC
Q 018330 171 MVLVGRVNKSL-VSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFG 249 (358)
Q Consensus 171 ~vl~g~ln~~l-v~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G 249 (358)
..++|..+ ...|.++|+++..+++.+.... ....+.+.+..+++.|.|||++|.. |
T Consensus 72 ---~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~----------------~~~~~~~~l~~~l~~g~ipVi~g~~----g 128 (229)
T cd04239 72 ---ATVMNALALQDALEKLGVKTRVMSAIPMQGV----------------AEPYIRRRAIRHLEKGRIVIFGGGT----G 128 (229)
T ss_pred ---HHHHHHHHHHHHHHHcCCCEEEeCHHHHhhh----------------hccccHHHHHHHHhCCCEEEEeCcc----C
Confidence 33567765 5678999999987765332110 0223678899999999999999964 3
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHc
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQ 326 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~ 326 (358)
. .+.++|++|+++|.+|+|++|+|+|||||||+++|+ |+ ++|++|+++|+.++.. |..++.++..+.+.
T Consensus 129 ~-~~~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~-------~~~~~~a~~~~~~~ 200 (229)
T cd04239 129 N-PGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL-------KVMDATALTLCRRN 200 (229)
T ss_pred C-CCCCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhc-------CCccHHHHHHHHHC
Confidence 3 245899999999999999999999999999988542 33 6999999999888742 44455566566778
Q ss_pred CCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 327 GVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 327 Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
|++ ++|+||+.|+.| .+++++++.||+|.
T Consensus 201 ~i~-v~I~~g~~~~~l-~~~l~g~~~GT~i~ 229 (229)
T cd04239 201 KIP-IIVFNGLKPGNL-LRALKGEHVGTLIE 229 (229)
T ss_pred CCe-EEEECCCChhHH-HHHHcCCCCCeEeC
Confidence 887 999999999996 67888888999984
|
Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als |
| >cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=231.99 Aligned_cols=222 Identities=18% Similarity=0.262 Sum_probs=166.4
Q ss_pred CeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHH-hHHHHHcCCCccccCCcccCCHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEI-NFWLKRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i-~~~l~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
|++||||||+++++|+ ..+.+.++++.|+.+...|+++|||||||+++ +....+++.. +.+. +.
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~~~~~~~-------~~~~----d~ 69 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMD-------RATA----DY 69 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchhhhcCCC-------chhh----hH
Confidence 5799999999999875 23455788999998888899999999999874 2222333332 2222 22
Q ss_pred HHHHHhhhhHH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCC
Q 018330 169 VSMVLVGRVNK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247 (358)
Q Consensus 169 v~~vl~g~ln~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~ 247 (358)
+.+ +..++|. .+++.|+++|+++..+++.+.+ +.+ ..++.+.++.+|+.|.|||+++.
T Consensus 70 ~g~-~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~--------------~~~--~~~~~~~l~~~l~~g~ipV~~g~---- 128 (231)
T cd04254 70 MGM-LATVINALALQDALESLGVKTRVMSAIPMQ--------------GVA--EPYIRRRAIRHLEKGRVVIFAGG---- 128 (231)
T ss_pred HHH-HHHHHHHHHHHHHHHHcCCCeEEEcHHHhh--------------hhh--cccCHHHHHHHHHCCCEEEEECC----
Confidence 223 3457777 5777999999999888754321 111 23578999999999999999963
Q ss_pred CCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 018330 248 FGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSL 324 (358)
Q Consensus 248 ~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al 324 (358)
.|. ..+++|++|+++|.+|+|++++|+|||||||+++|+ |+ ++|++++++|+.+. + ...-++.++..+.
T Consensus 129 ~G~-~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~---~----~~~~d~~a~~~a~ 200 (231)
T cd04254 129 TGN-PFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---G----LKVMDATAFTLCR 200 (231)
T ss_pred cCC-CCCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhc---c----hhhhHHHHHHHHH
Confidence 243 355899999999999999999999999999997543 34 69999999887653 1 1123666766667
Q ss_pred HcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 325 AQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 325 ~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.|++ ++|+||+.|++| .+++.|+.+||+|+
T Consensus 201 ~~gi~-~~I~~g~~~~~l-~~~l~g~~~GT~i~ 231 (231)
T cd04254 201 DNNLP-IVVFNINEPGNL-LKAVKGEGVGTLIS 231 (231)
T ss_pred HCCCe-EEEEeCCCccHH-HHHHCCCCCCEEeC
Confidence 78988 999999999997 56778888999985
|
The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be |
| >TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=266.76 Aligned_cols=251 Identities=21% Similarity=0.222 Sum_probs=183.3
Q ss_pred CCeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEE-ECChHHHhHHHHHcCCCcc-ccCCcccCCHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLV-HGGGPEINFWLKRFGIEPV-FRDGLRVTDANTME 167 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLV-hGgg~~i~~~l~~~gi~~~-~~~g~rvt~~~~~~ 167 (358)
.+++|||+||+++++++. ...+.+++++|+.|+..|+++||| ||++.+++..+..++.... +.+-.+......++
T Consensus 7 ~~~iViKiGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~~~q 86 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPELDGK 86 (715)
T ss_pred CCEEEEEeCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchHHHH
Confidence 489999999999999752 234578999999999999999995 5556666666654432211 10001223334455
Q ss_pred HHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-Ccc-
Q 018330 168 IVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAA- 245 (358)
Q Consensus 168 ~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~- 245 (358)
++..+.+..|+..+...|+++++.+ +|++.++.. |. ..+......+.|+.||+.|.|||+++ ...
T Consensus 87 a~aa~gq~~L~~~y~~~f~~~~i~~-------aQ~Llt~~d-----~~-~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~ 153 (715)
T TIGR01092 87 ACAAVGQSGLMALYETMFTQLDITA-------AQILVTDLD-----FR-DEQFRRQLNETVHELLRMNVVPVVNENDAVS 153 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCee-------EEEEechhh-----cc-cHHHHHHHHHHHHHHHHCCCEEEEcCCCccc
Confidence 5555556678888999999999987 566655531 11 11112346889999999999999997 221
Q ss_pred -CC----CCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc-ccC-cccccccHHHHHHHHh----CCCCCCCcH
Q 018330 246 -DE----FGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE-DPM-SLVKEIDIKGVKKMIE----DGKVGGGMI 314 (358)
Q Consensus 246 -~~----~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~-dp~-~lI~~I~~~e~~~l~~----~~~vtGGM~ 314 (358)
.+ +++-+++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++..+.+..+. ..+++|||.
T Consensus 154 ~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~ 233 (715)
T TIGR01092 154 TRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMT 233 (715)
T ss_pred ccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCCCCCCeEeeeecccchhhhhccCcccccCCCCch
Confidence 11 112248899999999999999999999999999999854 343 6899998654442222 235789999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 315 PKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 315 ~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+||++|..+.+.|++ ++|++|+.++.| .+++.|+..||.|.+
T Consensus 234 ~Kl~aa~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~~~~ 275 (715)
T TIGR01092 234 AKVKAAVWAAYGGTP-VIIASGTAPKNI-TKVVEGKKVGTLFHE 275 (715)
T ss_pred HHHHHHHHHHHCCCe-EEEeCCCCcchH-HHHhcCCCCceEecc
Confidence 999999999999998 999999999986 678888889999853
|
This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region. |
| >PRK06635 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=246.04 Aligned_cols=222 Identities=21% Similarity=0.288 Sum_probs=175.4
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMV 172 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~v 172 (358)
+++||||||+++.+ ++.+.+++++|..++..|+++|+|||| |..++.+++...... ...+.+.++.+...
T Consensus 2 ~~iViK~GGs~l~~---~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~ 72 (404)
T PRK06635 2 ALIVQKFGGTSVGD---VERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVS------PLPDPRELDMLLST 72 (404)
T ss_pred CeEEEeECCcccCC---HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhc------cCCCHHHHHHHhhh
Confidence 57999999999999 777789999999998889999998887 667676665432111 11244555544433
Q ss_pred Hhh-hhHH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccCCCC
Q 018330 173 LVG-RVNK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAADEFG 249 (358)
Q Consensus 173 l~g-~ln~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G 249 (358)
| .+|. .+.+.|+++|++++++++.+..+++... |+ .+++..++.+.++.+++.|.|||++| ++.+++|
T Consensus 73 --Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~------~~-~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g 143 (404)
T PRK06635 73 --GEQVSVALLAMALQSLGVKARSFTGWQAGIITDSA------HG-KARITDIDPSRIREALDEGDVVVVAGFQGVDEDG 143 (404)
T ss_pred --hHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCC------CC-ceEeeecCHHHHHHHHhCCCEEEecCccEeCCCC
Confidence 4 3444 6888999999999999998888877653 22 46778889999999999999999999 5788999
Q ss_pred Ccccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 250 QSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 250 ~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
+++++ |+|++|+++|..|+|++++++|||||||+++|. |+ ++|++++++|+.+++.. |.+..+..++..+
T Consensus 144 ~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~----g~~~~~~~a~~~~ 219 (404)
T PRK06635 144 EITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASL----GAKVLHPRSVEYA 219 (404)
T ss_pred CEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHc----CCcccCHHHHHHH
Confidence 99998 999999999999999999999999999997542 33 69999999999999754 3334455566666
Q ss_pred HHcCCCEEEEEeCCC
Q 018330 324 LAQGVRTASIIDGRV 338 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~ 338 (358)
.+.|++ ++|.|+..
T Consensus 220 ~~~~i~-~~i~~~~~ 233 (404)
T PRK06635 220 KKYNVP-LRVRSSFS 233 (404)
T ss_pred HHcCce-EEEEcCCC
Confidence 667887 99998764
|
|
| >PRK08841 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=242.75 Aligned_cols=222 Identities=21% Similarity=0.287 Sum_probs=179.3
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHH-HhHHHHHcCCCccccCCcccCCHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPE-INFWLKRFGIEPVFRDGLRVTDANTMEIVSMV 172 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~-i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~v 172 (358)
+++|+||||+++.+ ++.+..++++|+.+++.|.++|+||||+.. ++.++. +..... +++++..++.+...
T Consensus 2 ~~~V~KfGGtsv~~---~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~-~~~~~~-----~~~~~~~~d~l~s~ 72 (392)
T PRK08841 2 PLIVQKFGGTSVGS---IERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLG-LAKQVD-----SVPTARELDVLLSA 72 (392)
T ss_pred CeEEEeECcccCCC---HHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHH-hhhhhc-----cCCCHHHHHHHHHH
Confidence 47999999999999 777789999999998999999999999874 455443 222211 45566666665443
Q ss_pred Hhhhh--HHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccCCCC
Q 018330 173 LVGRV--NKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AADEFG 249 (358)
Q Consensus 173 l~g~l--n~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~~~G 249 (358)
|+. ...+...|++.|+++.++++.+..+++.... ..+++..++.+.+..+++.|.|||++|+ +.+++|
T Consensus 73 --GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~-------~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g 143 (392)
T PRK08841 73 --GEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQH-------NDATIKHIDTSTITELLEQDQIVIVAGFQGRNENG 143 (392)
T ss_pred --HHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCC-------CCceechhhHHHHHHHHhCCCEEEEeCCcccCCCC
Confidence 433 2346779999999999999988777765432 1366777788999999999999999994 788999
Q ss_pred Ccccc---ChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 250 QSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 250 ~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
+++++ ++|++|+.+|.+|+|++|+++|||||||+++| .|+ ++|++|+++|+.+++.. |.+.-+.+++..+
T Consensus 144 ~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~----Ga~vlhp~ai~~a 219 (392)
T PRK08841 144 DITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARK----GAKVLHLPSVQHA 219 (392)
T ss_pred CEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhc----CccccCHHHHHHH
Confidence 99988 99999999999999999999999999999854 244 69999999999999763 5667777888888
Q ss_pred HHcCCCEEEEEeCCC
Q 018330 324 LAQGVRTASIIDGRV 338 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~ 338 (358)
.+.|++ ++|.|+..
T Consensus 220 ~~~~Ip-i~i~n~~~ 233 (392)
T PRK08841 220 WKHSVP-LRVLSSFE 233 (392)
T ss_pred HHCCCe-EEEEecCC
Confidence 999999 99998754
|
|
| >PRK14558 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=225.57 Aligned_cols=222 Identities=21% Similarity=0.253 Sum_probs=162.8
Q ss_pred CeEEEEECCcccCCCCh----hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIV 169 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v 169 (358)
+++|||+|||++++|+. .+.+..++++|+.+++.|+++|||||||.+.+-. ...++ ++ ...+.+
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~-~~~~~----------~~-~~~d~i 68 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGV-ELKEL----------SP-TRADQI 68 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHH-hccCC----------Ch-HHHHHH
Confidence 57999999999998742 2445789999999988899999999999874411 11111 11 122222
Q ss_pred HHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCC
Q 018330 170 SMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEF 248 (358)
Q Consensus 170 ~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~ 248 (358)
.+. .-++|.. +.+.|.++|++++.++. ++. .+ .+.....+.+..+|+.|.|||++|..
T Consensus 69 g~~-~~~ln~~~~~~~l~~~gi~a~~~~~----~~~-~~-----------~~~~~~~~~i~~ll~~g~vpV~~G~~---- 127 (231)
T PRK14558 69 GML-GTVINALYLKDIFEKSGLKAVIVSQ----IVN-LP-----------SVEPINYDDIELYFRAGYIVIFAGGT---- 127 (231)
T ss_pred HHH-HHHHHHHHHHHHHHHcCCCeEEecc----ccc-cc-----------hhhhhhHHHHHHHHHCCCEEEEECCC----
Confidence 221 2346764 68899999999988763 221 11 11234578999999999999999952
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLA 325 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~ 325 (358)
| ..++++|++|+.+|..|+|++++++|||||||+++| +|+ ++|++|+++|+.++ + ...| +..++.-+.+
T Consensus 128 ~-~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~---g--~~~~--d~~a~~~a~~ 199 (231)
T PRK14558 128 S-NPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---G--LKVM--DTEAFSICKK 199 (231)
T ss_pred C-CCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc---C--cccc--cHHHHHHHHH
Confidence 2 335689999999999999999999999999999864 354 69999999888775 1 1223 2345555567
Q ss_pred cCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 326 QGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 326 ~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.|++ ++|+||.+|+.| ..++.|+..||+|.+
T Consensus 200 ~gi~-v~I~ng~~~~~l-~~~l~g~~~GT~i~~ 230 (231)
T PRK14558 200 YGIT-ILVINFFEPGNL-LKALKGENVGTLVVP 230 (231)
T ss_pred CCCC-EEEEeCCCCCHH-HHHHCCCCCcEEeCC
Confidence 7999 999999999997 567788889999975
|
|
| >TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=244.96 Aligned_cols=225 Identities=20% Similarity=0.252 Sum_probs=180.6
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVL 173 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl 173 (358)
+++|+||||+++.+ ++.+.+++++|+.++..|+++|+||||+..++..+.+++... + ..++++.+...++.+
T Consensus 1 ~~iViK~GGs~~~~---~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~-~--~~~~~~~~~~~i~~~-- 72 (401)
T TIGR00656 1 ELIVQKFGGTSVGS---GERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKA-I--RDAITPRERDELVSH-- 72 (401)
T ss_pred CcEEEEECCcCcCC---HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHH-h--ccCCChHHHHHHhhH--
Confidence 36899999999999 777789999999998899999999999888877665543210 0 014555555554444
Q ss_pred hhh-h-HHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCH-HHHHHHHhCCCeEEEcC-CccCCCC
Q 018330 174 VGR-V-NKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDP-TVIEPLVNSGHIPVIAS-VAADEFG 249 (358)
Q Consensus 174 ~g~-l-n~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~-~~I~~lL~~G~IPVi~g-v~~~~~G 249 (358)
|+ + +..++..|+++|++++++++.+..+++..... .+++..++. +.+..+++.|.|||++| ++.+.+|
T Consensus 73 -Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~-------~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g 144 (401)
T TIGR00656 73 -GERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFG-------NAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKG 144 (401)
T ss_pred -HHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCC-------ceEeeecchHHHHHHHHhCCCEEEecCcceeCCCC
Confidence 33 4 56789999999999999999999888866432 245667777 99999999999999999 6788889
Q ss_pred Ccccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 250 QSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 250 ~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
+++++ ++|++|+.+|.+|+|++|+++|||||||+++|. |+ ++|++++++|+.+++.. |....+.++..-+
T Consensus 145 ~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~----G~~v~~~~a~~~a 220 (401)
T TIGR00656 145 YTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATF----GAKVLHPRTVEPA 220 (401)
T ss_pred CEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHc----CCcccCHHHHHHH
Confidence 98887 699999999999999999999999999987542 34 69999999999999764 3345566677777
Q ss_pred HHcCCCEEEEEeCCCc
Q 018330 324 LAQGVRTASIIDGRVE 339 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~ 339 (358)
.+.+++ ++|.|+..|
T Consensus 221 ~~~~i~-i~i~~~~~~ 235 (401)
T TIGR00656 221 MRSGVP-IEVRSSFDP 235 (401)
T ss_pred HHCCCe-EEEEECCCC
Confidence 888999 999998776
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. |
| >PRK09411 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=231.40 Aligned_cols=237 Identities=26% Similarity=0.331 Sum_probs=168.6
Q ss_pred CeEEEEECCcccCCCCh----h-H--HHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK----D-N--LLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----~-~--l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~ 166 (358)
+++||-+||++|..++. + + .....++.|+.|.+. +++||+||.|||++.++.+...... . ...-|
T Consensus 2 ~~iVvAlGGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~~~------~-~~~pl 73 (297)
T PRK09411 2 KTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAWKE------V-EPYPL 73 (297)
T ss_pred CeEEEEcCchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhhcC------C-CCCCc
Confidence 58999999999987431 1 1 224568888888877 9999999999999987655322111 0 00001
Q ss_pred HHHHHHHhhhhHHHHHHHHHHcC---------------------------------------------CeeEeecCCCcc
Q 018330 167 EIVSMVLVGRVNKSLVSLINKAG---------------------------------------------ATAVGLSGMDGR 201 (358)
Q Consensus 167 ~~v~~vl~g~ln~~lv~~L~~~G---------------------------------------------i~av~lsg~d~~ 201 (358)
+.+..--+|.+-..+.++|...| +..+.- |..++
T Consensus 74 d~~~a~sqG~iGy~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~d-g~g~r 152 (297)
T PRK09411 74 DVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRD-GKYLR 152 (297)
T ss_pred hhhhhhcccHHHHHHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEec-CCceE
Confidence 11110002333334444444443 322221 33333
Q ss_pred EEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEc-----CCccCCCCCccccChHHHHHHHHHHcCCCeEEEee
Q 018330 202 LFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIA-----SVAADEFGQSYNINADTVAGELAAALGAEKLILLT 276 (358)
Q Consensus 202 ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~-----gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lT 276 (358)
.++++|.| +..++.+.|+.||++|+|||.+ |+..+.+|...|+|+|.+|+.||.+|+||+|+|+|
T Consensus 153 rVVpSP~P----------~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLT 222 (297)
T PRK09411 153 RVVASPQP----------RKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILT 222 (297)
T ss_pred EEccCCCC----------cceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEe
Confidence 33333322 1678999999999999998888 45555568889999999999999999999999999
Q ss_pred ccccccccccccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceE
Q 018330 277 DVAGILENREDPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTM 355 (358)
Q Consensus 277 DV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~ 355 (358)
||+|||+++++|+ ++|++++.+|++.++. .+|||.||+++|+++++.+..+++|.+ ++.+ .+++.|+ .||+
T Consensus 223 DVdGV~~n~~~p~~~~I~~it~~e~~~~~~---~~GgM~pKVeAA~~~v~~~g~~a~I~~---l~~~-~~~l~G~-~GT~ 294 (297)
T PRK09411 223 DADAVYENWGTPQQRAIRHATPDELAPFAK---ADGAMGPKVTAVSGYVRSRGKPAWIGA---LSRI-EETLAGE-AGTC 294 (297)
T ss_pred CchhhccCCCCCCCcCCCCcCHHHHHHhcc---CCCCcHHHHHHHHHHHHhCCCeEEECC---hhHH-HHHHCCC-CCeE
Confidence 9999999876776 6999999999988754 689999999999999999877788865 4454 5677776 7999
Q ss_pred Ec
Q 018330 356 IT 357 (358)
Q Consensus 356 I~ 357 (358)
|.
T Consensus 295 I~ 296 (297)
T PRK09411 295 IS 296 (297)
T ss_pred Ee
Confidence 85
|
|
| >PLN02418 delta-1-pyrroline-5-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=256.70 Aligned_cols=251 Identities=20% Similarity=0.258 Sum_probs=179.4
Q ss_pred CCeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHc-CCCccccCCc-ccCCHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRF-GIEPVFRDGL-RVTDANTME 167 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~-gi~~~~~~g~-rvt~~~~~~ 167 (358)
.+++|||+||+++++.+. ...+..+++.|+.+++.|+++|||.+|....+..+..+ ....+...-+ +.+.....+
T Consensus 15 ~~~iViK~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~q 94 (718)
T PLN02418 15 VKRVVIKVGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLVNSSFADLQKPQMELDGK 94 (718)
T ss_pred CCEEEEEeCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhhhcccccCCCCcchHHHH
Confidence 479999999999998541 12457899999999999999999999976655432221 1100000000 111111112
Q ss_pred HHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccC
Q 018330 168 IVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AAD 246 (358)
Q Consensus 168 ~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~ 246 (358)
.+..+....++..|...|+++|+.+ +|++.++. ||+ ..+......+.|+.||+.|.|||+++. ..+
T Consensus 95 a~aa~Gq~~l~~~~~~~f~~~g~~~-------~qillT~~-----~~~-~~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~ 161 (718)
T PLN02418 95 ACAAVGQSELMALYDTLFSQLDVTA-------SQLLVTDS-----DFR-DPDFRKQLSETVESLLDLRVIPIFNENDAVS 161 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCeE-------EEEEecHh-----Hhc-chhHhHhHHHHHHHHHHCCCEEEEcCCCCcc
Confidence 3334444567888999999999976 56655532 221 112234458999999999999999983 322
Q ss_pred -CC-----CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc-ccC-cccccccHHHHHHHHh----CCCCCCCcH
Q 018330 247 -EF-----GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE-DPM-SLVKEIDIKGVKKMIE----DGKVGGGMI 314 (358)
Q Consensus 247 -~~-----G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~-dp~-~lI~~I~~~e~~~l~~----~~~vtGGM~ 314 (358)
.. +...++|+|++|+++|.+++|++|+|+|||||||+++| +|+ ++|++++..+.+..+. ..+++|||.
T Consensus 162 ~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~ 241 (718)
T PLN02418 162 TRRAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMT 241 (718)
T ss_pred ccccccccccCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCCCCCceEcceecccchhhhhhcccccccCCCCcH
Confidence 11 23368899999999999999999999999999999854 344 6899987654433222 235799999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 315 PKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 315 ~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+|+++|..+.+.|++ ++|+||+.|+.| .++++|+..||+|.+
T Consensus 242 ~Kl~Aa~~a~~~Gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 283 (718)
T PLN02418 242 AKVKAAVNAASAGIP-VVITSGYALDNI-RKVLRGERVGTLFHQ 283 (718)
T ss_pred HHHHHHHHHHHCCCc-EEEeCCCCcchH-HHHhcCCCCceEecc
Confidence 999999999999998 999999999986 678898899999964
|
|
| >cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=218.28 Aligned_cols=213 Identities=21% Similarity=0.299 Sum_probs=159.5
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHH---cCCCccccCCcccCCHHHHHHHHH
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKR---FGIEPVFRDGLRVTDANTMEIVSM 171 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~---~gi~~~~~~g~rvt~~~~~~~v~~ 171 (358)
++||||||+++++++..+.+.++++.|+.+.. |+++|||||||++++.+.+. +++.. ..++.+..
T Consensus 1 ~iViKlGGs~l~~~~~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~-----------~~~d~~g~ 68 (221)
T cd04253 1 RIVISLGGSVLAPEKDADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASE-----------AFLDEIGI 68 (221)
T ss_pred CEEEEeccceeCCCCChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCH-----------HHHHHhcC
Confidence 57999999999874322344677888887654 78999999999998876543 22221 11222222
Q ss_pred HHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCc
Q 018330 172 VLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQS 251 (358)
Q Consensus 172 vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~ 251 (358)
. ..++|..+.+.+..+|++++++ +.+.+..+|+.|.|||++|...
T Consensus 69 ~-~~~ln~~~~~~~l~~~~~~~~~----------------------------~~~~~~~~l~~g~vpv~~G~~~------ 113 (221)
T cd04253 69 M-ATRLNARLLIAALGDAYPPVPT----------------------------SYEEALEAMFTGKIVVMGGTEP------ 113 (221)
T ss_pred H-HHHHHHHHHHHHHhcCCCcCCC----------------------------CHHHHHHHHHcCCeEEEECCCC------
Confidence 2 3478888877776677654321 3466788999999999999531
Q ss_pred cccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhC-CCCCCC-cHHHHHHHHHHHHc
Q 018330 252 YNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIED-GKVGGG-MIPKVNCCIRSLAQ 326 (358)
Q Consensus 252 ~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~-~~vtGG-M~~Kv~aA~~al~~ 326 (358)
.+++|++|+++|.+|+|++|+++|||+|||+++| +|+ ++|++|+++|+.++... +...|+ |..++.++..+.+.
T Consensus 114 -~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~ 192 (221)
T cd04253 114 -GQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERS 192 (221)
T ss_pred -CCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHC
Confidence 3579999999999999999999999999999854 344 69999999999998654 223344 56688777777788
Q ss_pred CCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 327 GVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 327 Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
|++ ++|+||+.|+.| .++|+|+..||.|.
T Consensus 193 gi~-~~I~~g~~p~~l-~~~l~g~~~GT~I~ 221 (221)
T cd04253 193 GIK-TIVVDGRDPENL-ERALKGEFVGTIIE 221 (221)
T ss_pred CCe-EEEECCCCccHH-HHHHCCCCCCeEeC
Confidence 988 999999999987 67888889999984
|
The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi |
| >TIGR02075 pyrH_bact uridylate kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-27 Score=216.67 Aligned_cols=222 Identities=18% Similarity=0.219 Sum_probs=164.0
Q ss_pred CeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHH-hHHHHHcCCCccccCCcccCCHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEI-NFWLKRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i-~~~l~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
+++||||||++++++. ..+.+.++++.|+.+...|+++|||||||++. +...++++..... ...+.+
T Consensus 2 ~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~a~~~~~~~~~--------~d~~g~ 73 (233)
T TIGR02075 2 KRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKELGIDRVT--------ADYMGM 73 (233)
T ss_pred CEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHHHHhcCCCCcc--------HHHHHH
Confidence 6899999999999721 13345788999988887889999999999864 3224666654211 112222
Q ss_pred HHHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCC
Q 018330 169 VSMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247 (358)
Q Consensus 169 v~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~ 247 (358)
. ..++|.. +.+.|.++|+++..+++.+.. + .+ .....+.++.+|++|.|||+++.
T Consensus 74 ~----~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~-----~----~~-------~~~~~~~i~~ll~~g~VpV~~g~---- 129 (233)
T TIGR02075 74 L----ATVINGLALRDALEKLGVKTRVLSAISMP-----Q----IC-------ESYIRRKAIKHLEKGKVVIFSGG---- 129 (233)
T ss_pred H----HHHHHHHHHHHHHHhCCCCcEEeccccCC-----C----Cc-------cccCHHHHHHHHHCCCEEEEECC----
Confidence 2 2356665 488999999999888754322 0 00 12347899999999999999863
Q ss_pred CCCccccChHHHHHHHHHHcCCCeEEEeec-cccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 248 FGQSYNINADTVAGELAAALGAEKLILLTD-VAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 248 ~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTD-V~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
.|. .++++|.+|+++|..|+|++|+|+|| |||||+++|. |+ ++|++++++|+.+. + -...++.++..+
T Consensus 130 ~g~-~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~---~----~~~~d~~~~~~a 201 (233)
T TIGR02075 130 TGN-PFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---N----LKVMDLTAFALA 201 (233)
T ss_pred CCC-CCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc---C----HHHHHHHHHHHH
Confidence 232 46799999999999999999999999 9999998653 44 69999999887653 1 012356666666
Q ss_pred HHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 324 LAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+.|++ ++|+||.+|+.| ..++.|+.+||+|.
T Consensus 202 ~~~~i~-v~i~~g~~~~~l-~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 202 RDNNLP-IVVFNIDEPGAL-KKVILGKGIGTLVS 233 (233)
T ss_pred HHCCCe-EEEEeCCCcchH-HHHHCCCCCCEEeC
Confidence 777988 999999999997 56778889999984
|
This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076. |
| >PRK07431 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=245.63 Aligned_cols=220 Identities=21% Similarity=0.318 Sum_probs=173.7
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMV 172 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~v 172 (358)
+++|+||||+++.+ ++...+++++|+.+...|+++|||||| |...+.++ +++. ++++..+.+...++
T Consensus 2 ~~iViKfGGss~~~---~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~-~~~~--------~~t~~~~~~~~~~~ 69 (587)
T PRK07431 2 ALIVQKFGGTSVGS---VERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELV-KLAK--------EISSNPPRREMDML 69 (587)
T ss_pred CeEEEEECchhcCC---HHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHH-HHHH--------HhccCCCHHHHHHH
Confidence 47899999999998 777789999999998899999999996 55555554 3321 23333334444555
Q ss_pred Hh-h-hhHHHHH-HHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-cc--C
Q 018330 173 LV-G-RVNKSLV-SLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AA--D 246 (358)
Q Consensus 173 l~-g-~ln~~lv-~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~--~ 246 (358)
+. | .++..+. ..|+++|++++++++.+..+++.... + .+++..++.+.++.+++.|.|||++|. +. +
T Consensus 70 ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~------~-~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~ 142 (587)
T PRK07431 70 LSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEH------G-RARILEIKTDRIQRHLDAGKVVVVAGFQGISLS 142 (587)
T ss_pred HHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCC------C-ceeeeeccHHHHHHHHhCCCeEEecCCcCCCCC
Confidence 43 3 4566555 58999999999999988888876532 2 367788889999999999999999984 44 3
Q ss_pred CCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--c-CcccccccHHHHHHHHhCCCCCCCcHHHHHHH
Q 018330 247 EFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--P-MSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCC 320 (358)
Q Consensus 247 ~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p-~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA 320 (358)
..|+++++ ++|++|+.+|.+|+|++++|+|||||||+++|. | .++|++|+++|+.+++..| +++|. .+++
T Consensus 143 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G--~~v~~--~~a~ 218 (587)
T PRK07431 143 SNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLG--ASVLH--PRAV 218 (587)
T ss_pred CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCC--CceEh--HHHH
Confidence 44777765 899999999999999999999999999987542 3 3699999999999997644 46776 5588
Q ss_pred HHHHHcCCCEEEEEeCC
Q 018330 321 IRSLAQGVRTASIIDGR 337 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~G~ 337 (358)
..+.+.|++ ++|.|+.
T Consensus 219 ~~~~~~~i~-i~i~~~~ 234 (587)
T PRK07431 219 EIARNYGVP-LVVRSSW 234 (587)
T ss_pred HHHHHcCCc-EEEecCC
Confidence 888899999 9999875
|
|
| >TIGR02076 pyrH_arch uridylate kinase, putative | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=210.19 Aligned_cols=212 Identities=20% Similarity=0.277 Sum_probs=153.8
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHH---HcCCCccccCCcccCCHHHHHHHHHH
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLK---RFGIEPVFRDGLRVTDANTMEIVSMV 172 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~---~~gi~~~~~~g~rvt~~~~~~~v~~v 172 (358)
+||||||+++++++..+.+.++++.|+.+... +++|||||||.+++.+++ .++.. ....+.+...
T Consensus 1 iViKlGGs~l~~~~~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~-----------~~~~~~~g~~ 68 (221)
T TIGR02076 1 IVISLGGSVLSPEIDAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGAS-----------ETFLDEIGID 68 (221)
T ss_pred CEEEechhhcCCCCCHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCC-----------HHHHHHhhhH
Confidence 58999999999864224557888888888765 899999999998765532 12221 1122222222
Q ss_pred HhhhhHHHHHHHHH-HcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCc
Q 018330 173 LVGRVNKSLVSLIN-KAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQS 251 (358)
Q Consensus 173 l~g~ln~~lv~~L~-~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~ 251 (358)
..++|..+.+.|. ..++++++. +......+++.|.|||++|.. .
T Consensus 69 -~~~ln~~~l~~ll~~~~~~~~~~----------------------------~~~~~~~~l~~g~ipv~~G~~---~--- 113 (221)
T TIGR02076 69 -ATRLNAMLLIAALGDDAYPKVPE----------------------------NFEEALEAMSLGKIVVMGGTH---P--- 113 (221)
T ss_pred -HHHHHHHHHHHHHHhcCCCCcCC----------------------------CHHHHHHHHHcCCEEEEcCCC---C---
Confidence 3467877665444 455554211 223446678899999999953 1
Q ss_pred cccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCC-CC-CcHHHHHHHHHHHHc
Q 018330 252 YNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKV-GG-GMIPKVNCCIRSLAQ 326 (358)
Q Consensus 252 ~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~v-tG-GM~~Kv~aA~~al~~ 326 (358)
.+++|++|+++|.+|+|++|+|+|||||||+++| +|+ ++|++|+++|+.++..++.. +| +|..|+.++..+.+.
T Consensus 114 -~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~ 192 (221)
T TIGR02076 114 -GHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERS 192 (221)
T ss_pred -CCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHC
Confidence 3689999999999999999999999999998754 344 69999999999998765433 45 456677766666667
Q ss_pred CCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 327 GVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 327 Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
|++ ++|++|+.|+.|. +++.|+..||.|.
T Consensus 193 ~i~-v~I~~g~~~~~l~-~~l~g~~~GT~i~ 221 (221)
T TIGR02076 193 KIR-TIVVNGRDPENLE-KVLKGEHVGTIIE 221 (221)
T ss_pred CCc-EEEECCCCccHHH-HHHCCCCCCeEeC
Confidence 877 9999999999985 5788888999984
|
This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP. |
| >TIGR00657 asp_kinases aspartate kinase | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-26 Score=228.39 Aligned_cols=231 Identities=23% Similarity=0.279 Sum_probs=174.2
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCC------c----------
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDG------L---------- 158 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g------~---------- 158 (358)
++|+||||+++.+ ++.+..+++.|......|+++|+|||+...++..|.++.....+..+ +
T Consensus 2 ~~V~KFGGssv~~---~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 78 (441)
T TIGR00657 2 LIVQKFGGTSVGN---AERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIEILER 78 (441)
T ss_pred CEEEEeCcccCCC---HHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 5899999999999 77678889988887778999999999977776666544322211111 0
Q ss_pred -----------ccCCHHHH-----HHHHHHHh-h-hhHH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccc
Q 018330 159 -----------RVTDANTM-----EIVSMVLV-G-RVNK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGE 219 (358)
Q Consensus 159 -----------rvt~~~~~-----~~v~~vl~-g-~ln~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~ 219 (358)
+.++.... ....+++. | +++. .++..|+++|++++++++.+..+++..... ....
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~------~~~~ 152 (441)
T TIGR00657 79 LIPQAIAEELKRLLDAELVLEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFG------RARV 152 (441)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCC------ceee
Confidence 00000000 01233433 6 3455 477899999999999999999898876432 1223
Q ss_pred eeecCHHHHHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-ccc
Q 018330 220 VARVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLV 292 (358)
Q Consensus 220 v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI 292 (358)
+..++.+.+..+++.|.|||++| ++.+.+|++.++ ++|++|+.+|.+|+|++|+++|||||||+++|. |+ +++
T Consensus 153 ~~~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i 232 (441)
T TIGR00657 153 IIEILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRI 232 (441)
T ss_pred cHhhhHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeEC
Confidence 56778999999999999999999 578888998887 799999999999999999999999999997542 33 699
Q ss_pred ccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCc
Q 018330 293 KEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVE 339 (358)
Q Consensus 293 ~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~ 339 (358)
++|+++|+.+++.. |.+..+.+++..+.+.+++ ++|.|+..|
T Consensus 233 ~~is~~ea~el~~~----G~~v~~~~a~~~~~~~~i~-i~i~~~~~~ 274 (441)
T TIGR00657 233 DEISYEEMLELASF----GAKVLHPRTLEPAMRAKIP-IVVKSTFNP 274 (441)
T ss_pred CccCHHHHHHHHhc----CCcccCHHHHHHHHHcCCe-EEEecCCCC
Confidence 99999999999764 3345555666677778998 999998765
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis. |
| >COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=201.67 Aligned_cols=249 Identities=25% Similarity=0.372 Sum_probs=174.2
Q ss_pred CeEEEEECCcccCCCCh----h---HHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK----D---NLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----~---~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~ 166 (358)
+++||-|||++|-.++. + +.....++.|+.|...|+++||.||.||+++.++.+.....+.. +......+++
T Consensus 1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~-~~p~~PLd~~ 79 (312)
T COG0549 1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEK-GVPAYPLDVL 79 (312)
T ss_pred CeEEEEecchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhcccc-CCCCccHHHH
Confidence 57999999999987632 1 12356788899998999999999999999998876543321111 1111111222
Q ss_pred HHHHHHHhhhhH-HHHHHHHHHcC---------------------------------------------CeeEeecCCCc
Q 018330 167 EIVSMVLVGRVN-KSLVSLINKAG---------------------------------------------ATAVGLSGMDG 200 (358)
Q Consensus 167 ~~v~~vl~g~ln-~~lv~~L~~~G---------------------------------------------i~av~lsg~d~ 200 (358)
-..++-+.|.+- ..|...|..+| +......+..+
T Consensus 80 ~AmsQG~IGy~l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~ 159 (312)
T COG0549 80 VAMSQGMIGYMLQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGY 159 (312)
T ss_pred hHhhhhHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCe
Confidence 222222222221 22334444444 33333333333
Q ss_pred cEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-----CccCCC---CCccccChHHHHHHHHHHcCCCeE
Q 018330 201 RLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-----VAADEF---GQSYNINADTVAGELAAALGAEKL 272 (358)
Q Consensus 201 ~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-----v~~~~~---G~~~~i~sD~~Aa~lA~~L~AdkL 272 (358)
+.++++|.+ ++.+..+.|+.|+++|.++|.+| +..+.. |-...||.|..++.||..++||.|
T Consensus 160 RRVVpSP~P----------~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~l 229 (312)
T COG0549 160 RRVVPSPKP----------VRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLL 229 (312)
T ss_pred eEecCCCCC----------ccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEE
Confidence 333333332 23467999999999999999986 223333 445678999999999999999999
Q ss_pred EEeeccccccccccccC-cccccccHHHHHHHHhCCCC-CCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCC
Q 018330 273 ILLTDVAGILENREDPM-SLVKEIDIKGVKKMIEDGKV-GGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDA 350 (358)
Q Consensus 273 i~lTDV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~v-tGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~ 350 (358)
+++||||+||.+.+.|+ +.+++++.+|+++++..+.+ .|.|.|||++|+.+++++-+++.|.+ .+.+ .+++.|
T Consensus 230 iILTdVd~Vy~n~gkp~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~-~~~l~g- 304 (312)
T COG0549 230 IILTDVDAVYVNFGKPNQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENA-EAALEG- 304 (312)
T ss_pred EEEeccchheecCCCccchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHH-HHHhcc-
Confidence 99999999999988887 58999999999999987765 59999999999999999777788876 4443 566664
Q ss_pred CCceEEcC
Q 018330 351 GAGTMITG 358 (358)
Q Consensus 351 g~GT~I~~ 358 (358)
..||.|.+
T Consensus 305 ~~GT~I~~ 312 (312)
T COG0549 305 KAGTVIVP 312 (312)
T ss_pred CCCcEecC
Confidence 58999974
|
|
| >PRK14556 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=199.77 Aligned_cols=224 Identities=20% Similarity=0.261 Sum_probs=164.2
Q ss_pred CeEEEEECCcccCCCCh----hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIV 169 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v 169 (358)
+++|+|+||+++..++. ++.+..++++|+.+.+.|+++.||.|||........+.+ .| .++.+.+.+
T Consensus 16 ~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~------~~---~~r~~~D~~ 86 (249)
T PRK14556 16 KRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFG------NK---IRRATADSM 86 (249)
T ss_pred CEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhcc------CC---CchhhhhHH
Confidence 79999999999987531 345678999999999999999999999998754322211 01 122334455
Q ss_pred HHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCC
Q 018330 170 SMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEF 248 (358)
Q Consensus 170 ~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~ 248 (358)
.|. +..+|.. +..+|.+.|+++.-+|. -+.. .+ . ...+.+.+.+.|+.|.|+|+.+. .
T Consensus 87 Gml-aT~iNal~l~~~l~~~~~~~~v~sa--------~~~~---~~---~--e~~~~~~~~~~l~~g~vvi~~gg----~ 145 (249)
T PRK14556 87 GMI-ATMINALALRDMLISEGVDAEVFSA--------KGVD---GL---L--KVASAHEFNQELAKGRVLIFAGG----T 145 (249)
T ss_pred HHH-HHHHHHHHHHHHHHHcCCCeEEeec--------cccC---cC---C--CCCCHHHHHHHHhCCCEEEEECC----C
Confidence 554 6789985 66799999999765553 2211 01 1 12267778888999999998873 2
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLA 325 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~ 325 (358)
|. .++++|++|+++|..++||.|+++|||||||+++| +|+ ++|++|++.|..+.. -. -| +..++..+.+
T Consensus 146 G~-p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~--l~---vm--d~~A~~~a~~ 217 (249)
T PRK14556 146 GN-PFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKE--LN---VM--DLGAFTQCRD 217 (249)
T ss_pred CC-CcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhcccc--hH---hH--HHHHHHHHHH
Confidence 32 35579999999999999999999999999999865 354 599999987765421 01 12 2345666678
Q ss_pred cCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 326 QGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 326 ~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.|++ ++|+||++|++| .+++.|+..||+|.
T Consensus 218 ~gIp-i~I~ng~~~~~L-~~~l~Ge~~GT~i~ 247 (249)
T PRK14556 218 FGIP-IYVFDLTQPNAL-VDAVLDSKYGTWVT 247 (249)
T ss_pred CCCc-EEEECCCCchHH-HHHHcCCCCceEEE
Confidence 8999 999999999997 56778889999985
|
|
| >PRK14557 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=197.45 Aligned_cols=223 Identities=14% Similarity=0.224 Sum_probs=155.6
Q ss_pred CeEEEEECCcccCCCCh----hHHHHHHHHHHHHhHhCCCeEEEEECChHHH-hHHHHHcCCCccccCCcccCCHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEI-NFWLKRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i-~~~l~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
+++||||||+++.+++. ++....+++.|+.+...|++++||||||... +...+++++.. ...+.
T Consensus 5 ~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~~a~~~~~~~-----------~~~D~ 73 (247)
T PRK14557 5 KRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDR-----------VEADN 73 (247)
T ss_pred cEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHhcCCCh-----------HHHHH
Confidence 79999999999988642 2345788889988888899999999998744 35556655432 12233
Q ss_pred HHHHHhhhhHHHH-HHHHHHc-CCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccC
Q 018330 169 VSMVLVGRVNKSL-VSLINKA-GATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAAD 246 (358)
Q Consensus 169 v~~vl~g~ln~~l-v~~L~~~-Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~ 246 (358)
+.+. ..++|..+ ..+|+.. ++. ..+++..+.+ ..........+...|++|.|||+.|.
T Consensus 74 ig~~-g~~lna~ll~~~l~~~~~~~--------~~i~t~~~~~--------~~~~~~~~~~~~~~l~~g~VvV~~G~--- 133 (247)
T PRK14557 74 IGTL-GTIINSLMLRGVLTSKTNKE--------VRVMTSIPFN--------AVAEPYIRLRAVHHLDNGYIVIFGGG--- 133 (247)
T ss_pred HHHH-HHHHHHHHHHHHHHhhhCCc--------eeEEeccccc--------cccchhhHHHHHHHHhCCCEEEEECC---
Confidence 3332 45678754 4456653 443 3344443322 11123344556677999999999984
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEe-ecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILL-TDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIR 322 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~l-TDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~ 322 (358)
.|. ..+++|++|+++|..++||.|+++ |||||||+++| +|+ ++|++|++.|+.. .+. .-|. ..++..
T Consensus 134 -~g~-~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~---~~~--~~~~--~~A~~~ 204 (247)
T PRK14557 134 -NGQ-PFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVR---QNI--QVMD--QAALLL 204 (247)
T ss_pred -cCC-CccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhcc---cCH--HHHH--HHHHHH
Confidence 222 345799999999999999999999 59999999865 354 6999999887631 110 0122 235556
Q ss_pred HHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 323 SLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 323 al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+.+.|++ ++|+||++|++| ..++.|+..||+|.+
T Consensus 205 a~~~gi~-v~I~ng~~~~~l-~~~l~g~~~GT~i~~ 238 (247)
T PRK14557 205 ARDYNLP-AHVFNFDEPGVM-RRICLGEHVGTLIND 238 (247)
T ss_pred HHHCCCc-EEEEeCCCChHH-HHHHcCCCCcEEEec
Confidence 6777998 999999999987 567888999999964
|
|
| >cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=205.47 Aligned_cols=240 Identities=19% Similarity=0.284 Sum_probs=166.6
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCC-----Ccccc-------------
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGI-----EPVFR------------- 155 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi-----~~~~~------------- 155 (358)
++|.||||+++.+ ++.+..+++-|... ..+.++|+|.++ |...+.+++.... .+.+.
T Consensus 1 ~~V~KFGGtSv~~---~~~~~~v~~iI~~~-~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~~~~~~~~l~~i~~~h~~~ 76 (298)
T cd04244 1 RLVMKFGGTSVGS---AERIRHVADLVGTY-AEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIAGVKDFIEILRLRHIKA 76 (298)
T ss_pred CEEEEECcccCCC---HHHHHHHHHHHHHh-hcCCCEEEEEeCCCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 4799999999999 65556666666654 457899999998 4333443321110 00000
Q ss_pred -CCcccCCHH-------------HH---------------HHHHHHH-hhhh-HH-HHHHHHHHcCCeeEeecCCCccEE
Q 018330 156 -DGLRVTDAN-------------TM---------------EIVSMVL-VGRV-NK-SLVSLINKAGATAVGLSGMDGRLF 203 (358)
Q Consensus 156 -~g~rvt~~~-------------~~---------------~~v~~vl-~g~l-n~-~lv~~L~~~Gi~av~lsg~d~~ll 203 (358)
+.+- .+.. .+ ....+++ .|+. +. .+...|+++|+++..+++.++.++
T Consensus 77 ~~~l~-~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~ 155 (298)
T cd04244 77 AKEAI-SDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGII 155 (298)
T ss_pred HHHhh-cchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHccee
Confidence 0000 0000 00 0001121 2444 33 356789999999999999999888
Q ss_pred EeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccc
Q 018330 204 TARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVA 279 (358)
Q Consensus 204 ~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~ 279 (358)
+.....+...+ ++....++. .+..+++.|.|||++| ++.+.+|+++++ ++|++|+.+|.+|+|++++++|||+
T Consensus 156 t~~~~~~a~~~--~~~~~~i~~-~l~~ll~~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~ 232 (298)
T cd04244 156 TDDNFGNARPL--PATYERVRK-RLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVD 232 (298)
T ss_pred ecCcccccccc--hhHHHHHHH-HHHHHhhcCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCC
Confidence 87654321111 233333433 4557888999999999 588889999988 9999999999999999999999999
Q ss_pred cccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 280 GILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 280 GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
|||+.+|+ |+ ++|++|+++|+.+++.. |.+..+.++..-+.+.+++ ++|.|+..| +..||+|
T Consensus 233 Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~----Ga~vlhp~ai~~a~~~~Ip-i~i~n~~~p----------~~~GT~I 297 (298)
T cd04244 233 GVMTADPRIVPEARTIPRLSYAEAMELAYF----GAKVLHPRTVEPAMEKGIP-VRVKNTFNP----------EAPGTLI 297 (298)
T ss_pred CCCCCCCCCCCCCeEcCccCHHHHHHHHhC----CCcccCHHHHHHHHHcCCc-EEEeeCCCC----------CCCCCEe
Confidence 99987542 33 69999999999999764 5677777788888889999 999998766 3579988
Q ss_pred c
Q 018330 357 T 357 (358)
Q Consensus 357 ~ 357 (358)
+
T Consensus 298 ~ 298 (298)
T cd04244 298 T 298 (298)
T ss_pred C
Confidence 4
|
The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. |
| >COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=185.44 Aligned_cols=224 Identities=19% Similarity=0.254 Sum_probs=166.5
Q ss_pred cCCeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHH-cCCCccccCCcccCCHHHH
Q 018330 92 RGKTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKR-FGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~-~gi~~~~~~g~rvt~~~~~ 166 (358)
+.+++|+|+||+++..++ .++.+.+++++|+.+...|.++.||.|||..++.+... .|++ | .+.
T Consensus 4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~-------r----~~~ 72 (238)
T COG0528 4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMD-------R----VTA 72 (238)
T ss_pred ceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCc-------h----hhh
Confidence 448999999999999864 24667899999999998999999999999987655432 2333 2 234
Q ss_pred HHHHHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCcc
Q 018330 167 EIVSMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAA 245 (358)
Q Consensus 167 ~~v~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~ 245 (358)
+.+.|. +.++|.. +.++|.++|+++.-+|. -..+. + ....+.+...+.|+.|.|+|+.+
T Consensus 73 D~mGml-aTvmNal~L~~aL~~~~~~~~v~sa--------i~~~~------~--~e~~~~~~A~~~l~~grVvIf~g--- 132 (238)
T COG0528 73 DYMGML-ATVMNALALQDALERLGVDTRVQSA--------IAMPQ------V--AEPYSRREAIRHLEKGRVVIFGG--- 132 (238)
T ss_pred hHHHHH-HHHHHHHHHHHHHHhcCCcceeccc--------ccCcc------c--cCccCHHHHHHHHHcCCEEEEeC---
Confidence 444443 5678984 67799999999754442 22220 0 02234556667789999999998
Q ss_pred CCCCCccccChHHHHHHHHHHcCCCeEEEeec-ccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHH
Q 018330 246 DEFGQSYNINADTVAGELAAALGAEKLILLTD-VAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCI 321 (358)
Q Consensus 246 ~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTD-V~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~ 321 (358)
.+|++++ ++|++|+++|..++||-|+..|+ |||||+++| ||+ +++++|+++|+.+..-. =|- ..|.
T Consensus 133 -Gtg~P~f-TTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~-----vmD---~tA~ 202 (238)
T COG0528 133 -GTGNPGF-TTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLK-----VMD---PTAF 202 (238)
T ss_pred -CCCCCCC-chHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcCe-----eec---HHHH
Confidence 3566655 69999999999999999999995 999999865 566 59999999998886310 011 2344
Q ss_pred -HHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 322 -RSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 322 -~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+.+++++ ++++|.+++++| ..++.|+..||.|.+
T Consensus 203 ~l~~~~~i~-i~Vfn~~~~~~l-~~~~~ge~~gT~V~~ 238 (238)
T COG0528 203 SLARDNGIP-IIVFNINKPGNL-KRALKGEEVGTIVEP 238 (238)
T ss_pred HHHHHcCCc-EEEEeCCCCccH-HHHHcCCCCceEecC
Confidence 44566888 999999999996 667789999999974
|
|
| >cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=190.30 Aligned_cols=195 Identities=26% Similarity=0.411 Sum_probs=137.0
Q ss_pred EEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHH---HHcCCCccccCCcccCCHHHHHHHHHHH
Q 018330 97 VVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWL---KRFGIEPVFRDGLRVTDANTMEIVSMVL 173 (358)
Q Consensus 97 VIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l---~~~gi~~~~~~g~rvt~~~~~~~v~~vl 173 (358)
|||+|||.+.+ ...+.+.+..+. |++++||.|||++++.+. .++|++. .+.+.+.+.
T Consensus 1 vvKiGGsl~~~------~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~~~~g~~~-----------~~ad~mgil- 60 (203)
T cd04240 1 VVKIGGSLIRE------AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQERKGLSD-----------AAAHWMAIL- 60 (203)
T ss_pred CEEEccccccc------HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHHHHcCCCh-----------HHHHHHHHH-
Confidence 79999999765 244555555443 899999999999976654 3444432 222222222
Q ss_pred hhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCcc----CCCC
Q 018330 174 VGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAA----DEFG 249 (358)
Q Consensus 174 ~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~----~~~G 249 (358)
+.++|..+.+ ... + +. ..-+.+.+.+++..|.|||+.|... +..+
T Consensus 61 at~~na~~l~---~~~-~---------------~~------------~~~~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~ 109 (203)
T cd04240 61 AMEQYGYLLA---DLE-P---------------RL------------VARTLAELTDVLERGKIAILLPYRLLLDTDPLP 109 (203)
T ss_pred HHHHHHHHHh---ccC-C---------------cc------------ccCCHHHHHHHHHCCCcEEEeCchhhcccCCCC
Confidence 3345655422 100 0 00 0113567889999999999999654 5677
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCC
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVR 329 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~ 329 (358)
+.+|+|+|++|+++|..|+|++|+++|||||||+++ +++|++++.+|+.. .+.+. +|.+|+ +.+.|++
T Consensus 110 ~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d---a~~i~~i~~~e~~~---~~~id-~~~~~~-----~~~~gi~ 177 (203)
T cd04240 110 HSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD---GKLVNEIAAAELLG---ETSVD-PAFPRL-----LTKYGIR 177 (203)
T ss_pred cccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCC---CcCccccCHHHhCC---CCeeh-hhHHHH-----HHhCCCe
Confidence 889999999999999999999999999999999862 68999999887653 12222 244444 3567885
Q ss_pred EEEEEeCCCcchHHHHHHcCC-CCceEE
Q 018330 330 TASIIDGRVEHSLLLEILTDA-GAGTMI 356 (358)
Q Consensus 330 ~v~Ii~G~~~~~Ll~el~~~~-g~GT~I 356 (358)
++|+||+.|++|...+ .++ ++||.|
T Consensus 178 -v~I~~g~~~~~l~~~l-~g~~~~GT~I 203 (203)
T cd04240 178 -CYVVNGDDPERVLAAL-RGREGVGTRI 203 (203)
T ss_pred -EEEECCCCccHHHHHH-CCCCCCCCCC
Confidence 9999999999986655 556 799976
|
Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily. |
| >COG0527 LysC Aspartokinases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=200.49 Aligned_cols=237 Identities=21% Similarity=0.252 Sum_probs=168.8
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChH-HHhHHHHHcCCCc----------------cccCC
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGP-EINFWLKRFGIEP----------------VFRDG 157 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~-~i~~~l~~~gi~~----------------~~~~g 157 (358)
++|.||||+++.+ .+.+..+++-+....+.|.++|+|.+++. ..+.+++-..... +....
T Consensus 3 ~iV~KFGGTSva~---~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~el~~~ 79 (447)
T COG0527 3 LIVQKFGGTSVAD---AERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASELILD 79 (447)
T ss_pred eEEEEeCCcccCC---HHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHHHHhhc
Confidence 7899999999999 66567788888887777999999999976 4444433222100 00000
Q ss_pred c-----------------------ccCCHHHHHHHHHHHhhhhHH--HHHHHHHHcCCeeEeecCCCccEEEeecCCCCC
Q 018330 158 L-----------------------RVTDANTMEIVSMVLVGRVNK--SLVSLINKAGATAVGLSGMDGRLFTARPSPNSD 212 (358)
Q Consensus 158 ~-----------------------rvt~~~~~~~v~~vl~g~ln~--~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~ 212 (358)
. ...++..++.+-. .||... .+...|++.|+++..+++++..+.+....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS--~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~--- 154 (447)
T COG0527 80 PFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLS--LGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHG--- 154 (447)
T ss_pred chhhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHh--hchHHHHHHHHHHHHhCCCceEEEchHHceeeecCccc---
Confidence 0 0112222333222 355443 466789999999999999888887765433
Q ss_pred CCCcccceeecCHHH-HHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc
Q 018330 213 KLGFVGEVARVDPTV-IEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED 287 (358)
Q Consensus 213 d~g~~g~v~~i~~~~-I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d 287 (358)
..++.....+. +..+++.|.|||++| .+.+++|++..+ .+|+.|+.||..|+||++.++|||||||+.+|.
T Consensus 155 ----~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPR 230 (447)
T COG0527 155 ----NARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPR 230 (447)
T ss_pred ----ccccchhhhhhhHHHHhcCCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCC
Confidence 22333445566 888999999999999 578889998876 899999999999999999999999999998542
Q ss_pred --cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 288 --PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 288 --p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
|+ ++|++|+|+|+.+|+..|. -.-.-++..-+.+.+++ ++|.|-..| +..||+|++
T Consensus 231 iVp~Ar~i~~isyeEa~ELA~~GA----kVLHprav~pa~~~~Ip-~~i~~t~~p----------~~~GTlI~~ 289 (447)
T COG0527 231 IVPDARLLPEISYEEALELAYLGA----KVLHPRAVEPAMRSGIP-LRIKNTFNP----------DAPGTLITA 289 (447)
T ss_pred CCCcceEcCccCHHHHHHHHHCCc----hhcCHHHHHHHHhcCCc-EEEEecCCC----------CCCceEEec
Confidence 33 6999999999999987542 01112344455666999 999885544 347888863
|
|
| >PRK08373 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-22 Score=192.63 Aligned_cols=236 Identities=17% Similarity=0.210 Sum_probs=159.9
Q ss_pred cCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcC-C-Ccc-----------ccCCc
Q 018330 92 RGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFG-I-EPV-----------FRDGL 158 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~g-i-~~~-----------~~~g~ 158 (358)
.++++|+||||+++.+ . +..+++-|... ..|.++|+|.++-..++..|.++. . ..+ +.+.+
T Consensus 2 ~~~m~V~KFGGsSv~~---~--~~~v~~ii~~~-~~~~~vvVVVSA~~gvTd~L~~l~~~~~~~~l~~i~~~h~~~~~~L 75 (341)
T PRK08373 2 VEKMIVVKFGGSSVRY---D--FEEALELVKYL-SEENEVVVVVSALKGVTDKLLKLAETFDKEALEEIEEIHEEFAKRL 75 (341)
T ss_pred CCCCEEEEECCcchHh---H--HHHHHHHHHHH-hcCCCEEEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 4678999999999987 3 34555555533 458899999999444443332211 0 000 00000
Q ss_pred -------------------ccCCHHHHHHHHHHHhhhh-HH-HHHHHHHHcCCeeEeecCCCccEEEeecCCC-CCCCCc
Q 018330 159 -------------------RVTDANTMEIVSMVLVGRV-NK-SLVSLINKAGATAVGLSGMDGRLFTARPSPN-SDKLGF 216 (358)
Q Consensus 159 -------------------rvt~~~~~~~v~~vl~g~l-n~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~-~~d~g~ 216 (358)
........+.+-. .|+. +. .+...|+++|+++..+++.+. +.+....++ ..|.
T Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~~~~~D~ils--~GE~lSa~lla~~L~~~Gi~a~~l~~~~~-i~t~~~~~~a~i~~-- 150 (341)
T PRK08373 76 GIDLEILSPYLKKLFNSRPDLPSEALRDYILS--FGERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGNAFIDI-- 150 (341)
T ss_pred ccchhhHHHHHHHHHHHhhccCChHHHHHHHH--HHHHHHHHHHHHHHHHCCCceEEEeHHHh-eeecCCccceeech--
Confidence 0111222232222 2333 33 466789999999999987544 333221111 0010
Q ss_pred ccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-c
Q 018330 217 VGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-S 290 (358)
Q Consensus 217 ~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~ 290 (358)
.....+.+.+..+++.|.|||++|+..+.+|.+.++ ++|++|+.+|.+|+|++++++|||||||+++|. |+ +
T Consensus 151 --~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~ 228 (341)
T PRK08373 151 --KKSKRNVKILYELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSAR 228 (341)
T ss_pred --hhhhhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCe
Confidence 112356689999999999999999655778887766 899999999999999999999999999998543 33 5
Q ss_pred ccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 291 LVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 291 lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+|++|+++|+.++. .+||..+...|+..++.+++ ++|.|-..| ..||+|.
T Consensus 229 ~i~~isy~Ea~ela-----~~Gakvlhp~ai~~a~~~Ip-i~v~~t~~~-----------~~GT~I~ 278 (341)
T PRK08373 229 LIPYLSYDEALIAA-----KLGMKALHWKAIEPVKGKIP-IIFGRTRDW-----------RMGTLVS 278 (341)
T ss_pred EcccCCHHHHHHHH-----HCcChhhhHHHHHHHHcCCc-EEEecCCCC-----------CCCcEEe
Confidence 99999999999985 57899999999988877888 888774322 3588884
|
|
| >PRK06291 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-22 Score=201.07 Aligned_cols=229 Identities=18% Similarity=0.251 Sum_probs=163.1
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCC-----C-ccc-------------
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGI-----E-PVF------------- 154 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi-----~-~~~------------- 154 (358)
++|.||||+++.+ .+.+..+++-|......|.++|+|.++ |...+.+++.... . ..+
T Consensus 2 ~~V~KFGGtSv~~---~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 78 (465)
T PRK06291 2 RLVMKFGGTSVGD---GERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRDIAKVKDFIADLRERHYK 78 (465)
T ss_pred cEEEEeCcccCCC---HHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 5799999999999 655567777666555578899999998 4334443321100 0 000
Q ss_pred -cCCc----------------------------c---cCCHHHHHHHHHHHhhhhH-H-HHHHHHHHcCCeeEeecCCCc
Q 018330 155 -RDGL----------------------------R---VTDANTMEIVSMVLVGRVN-K-SLVSLINKAGATAVGLSGMDG 200 (358)
Q Consensus 155 -~~g~----------------------------r---vt~~~~~~~v~~vl~g~ln-~-~lv~~L~~~Gi~av~lsg~d~ 200 (358)
.+.+ + ...+...+.+ +..|+.. . .+...|+++|+++..+++.+.
T Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i--~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~ 156 (465)
T PRK06291 79 AIEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYI--LSFGERLSAPILSGALRDLGIKSVALTGGEA 156 (465)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHH--HhhhHHHHHHHHHHHHHhCCCCeEEEchHHC
Confidence 0000 0 0001111111 1135553 3 467789999999999999999
Q ss_pred cEEEeecCCCCCCCCcccce--e-ecCHHHHHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEE
Q 018330 201 RLFTARPSPNSDKLGFVGEV--A-RVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLI 273 (358)
Q Consensus 201 ~ll~a~~~~~~~d~g~~g~v--~-~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi 273 (358)
++++....+. .+.. . ....+.+..+++.|.|||++| ++.+.+|++.++ ++|++|+.+|..|+|++++
T Consensus 157 ~i~t~~~~~~------~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~ 230 (465)
T PRK06291 157 GIITDSNFGN------ARPLPKTYERVKERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIW 230 (465)
T ss_pred cEEecCCCCc------eeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEE
Confidence 8988765331 1110 0 111346788899999999999 578889999888 9999999999999999999
Q ss_pred Eeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCc
Q 018330 274 LLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVE 339 (358)
Q Consensus 274 ~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~ 339 (358)
++|||||||+.+|. |+ ++|++++++|+.++.. .|.+..+.+++..+.+.+++ ++|.|+..|
T Consensus 231 i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~----~G~~v~~~~a~~~~~~~~i~-i~i~~~~~~ 294 (465)
T PRK06291 231 IWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSY----FGAKVLHPRTIEPAMEKGIP-VRVKNTFNP 294 (465)
T ss_pred EEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHh----CCCcccCHHHHHHHHHcCCc-EEEecCCCC
Confidence 99999999987542 44 6999999999999964 35678888898888999999 999998776
|
|
| >cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=185.17 Aligned_cols=239 Identities=17% Similarity=0.226 Sum_probs=159.9
Q ss_pred EEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHH-hHHHHHcCC--Cccc------------------
Q 018330 96 IVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEI-NFWLKRFGI--EPVF------------------ 154 (358)
Q Consensus 96 iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i-~~~l~~~gi--~~~~------------------ 154 (358)
+|.||||+++.+ ++.+..+++-|..-.+.+.++|+|.++-..+ +.+++.... ...+
T Consensus 2 ~V~KFGGtSv~~---~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~l~~i~~~~~~~~~~L 78 (295)
T cd04259 2 VVLKFGGTSVSS---RARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNLAEQL 78 (295)
T ss_pred EEEEeCccccCC---HHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 699999999999 6555666666554334677899999984333 333221100 0000
Q ss_pred ------------------cCCccc---CCHHHHHHHHHHH-hhhhHH--HHHHHHHHcCCeeEeecCCCccEEEeecCCC
Q 018330 155 ------------------RDGLRV---TDANTMEIVSMVL-VGRVNK--SLVSLINKAGATAVGLSGMDGRLFTARPSPN 210 (358)
Q Consensus 155 ------------------~~g~rv---t~~~~~~~v~~vl-~g~ln~--~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~ 210 (358)
.+++.. ..+... .+++ .|+... .+...|++.|+++.-+++++. +++....+.
T Consensus 79 ~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~---d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~~~~~~~~ 154 (295)
T cd04259 79 EVDADALLANDLAQLQRWLTGISLLKQASPRTR---AEVLALGELMSTRLGAAYLEAQGLKVKWLDAREL-LTATPTLGG 154 (295)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhccCCHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHh-eeecccccc
Confidence 001000 011111 1221 355433 356789999999999987554 222222110
Q ss_pred -CCCCCcccce-eecCHHHHHHHHhC-CCeEEEcCC-ccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccc
Q 018330 211 -SDKLGFVGEV-ARVDPTVIEPLVNS-GHIPVIASV-AADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILE 283 (358)
Q Consensus 211 -~~d~g~~g~v-~~i~~~~I~~lL~~-G~IPVi~gv-~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~ 283 (358)
..+|+ ...+ .....+.|.+.+.. +.|||++|+ +.+.+|++.++ ++|++|+.+|..|+|++++++|||+|||+
T Consensus 155 ~~~~~~-~a~v~~~~~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt 233 (295)
T cd04259 155 ETMNYL-SARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFT 233 (295)
T ss_pred cccccc-cceehhhhhHHHHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 11111 1122 12345667766765 679999995 78889998876 99999999999999999999999999999
Q ss_pred cccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 284 NRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 284 ~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+|+ |+ ++|++|+++|+.+++. .|++..+.+++.-+.+.+++ ++|.|+..| +..||+|+
T Consensus 234 ~DP~~~~~a~~i~~ls~~ea~~l~~----~Ga~v~h~~a~~~a~~~~ip-i~i~~~~~p----------~~~GT~I~ 295 (295)
T cd04259 234 ANPHEVPHARLLKRLDYDEAQEIAT----MGAKVLHPRCIPPARRANIP-MVVRSTERP----------ELSGTLIT 295 (295)
T ss_pred CCCCCCCCCeEeceeCHHHHHHHHH----cCCcccCHHHHHHHHHCCCC-EEEEeCCCC----------CCCCcEeC
Confidence 6542 34 6999999999999976 35677788888888899999 999998765 35799884
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. |
| >cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-20 Score=175.50 Aligned_cols=155 Identities=22% Similarity=0.275 Sum_probs=114.1
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeec-CHHHHHHHHhC-CCeEEEcC-CccCCCCCcccc--
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARV-DPTVIEPLVNS-GHIPVIAS-VAADEFGQSYNI-- 254 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i-~~~~I~~lL~~-G~IPVi~g-v~~~~~G~~~~i-- 254 (358)
.+...|++.|+++..+++++. +++....+ . ..+... ..+.++.+++. +.|||++| ++.+..|++.++
T Consensus 130 lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~------~-~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ttLGR 201 (293)
T cd04243 130 LMSAYLQEQGLPAAWLDAREL-LLTDDGFL------N-AVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGETTTLGR 201 (293)
T ss_pred HHHHHHHhCCCCcEEEcHHHe-EEecCCCC------c-chhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCEEEeCC
Confidence 356789999999999987543 33322111 1 111111 14578888887 89999999 578889998877
Q ss_pred -ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCE
Q 018330 255 -NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRT 330 (358)
Q Consensus 255 -~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~ 330 (358)
++|++|+.+|..|+|++++++|||||||+++|. |+ ++|++|+++|+.++...|. .-+.|+ +..-+.+.+++
T Consensus 202 ggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Ga--kvl~p~--ai~~a~~~~i~- 276 (293)
T cd04243 202 GGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGA--KVLHPR--TIQPAIRKNIP- 276 (293)
T ss_pred CCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCC--cccCHH--HHHHHHHCCCc-
Confidence 689999999999999999999999999998652 44 6999999999999976441 112222 33456677999
Q ss_pred EEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 331 ASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 331 v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
++|.|+..| +..||+|.
T Consensus 277 i~i~~~~~p----------~~~GT~I~ 293 (293)
T cd04243 277 IFIKNTFNP----------EAPGTLIS 293 (293)
T ss_pred EEEecCCCC----------CCCCCEeC
Confidence 999998766 35799884
|
These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK- |
| >cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=174.66 Aligned_cols=152 Identities=21% Similarity=0.240 Sum_probs=114.1
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCccccee-ecCHHHHHHHHhC-CCeEEEcCC-ccCCCCCcccc--
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVA-RVDPTVIEPLVNS-GHIPVIASV-AADEFGQSYNI-- 254 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~-~i~~~~I~~lL~~-G~IPVi~gv-~~~~~G~~~~i-- 254 (358)
.+...|++.|+++..+++.+. +++... ++. ..+. ....+.++.++.. +.|||++|+ +.+.+|++..+
T Consensus 131 lla~~L~~~Gi~a~~ld~~~~-i~t~~~------~~~-a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGR 202 (294)
T cd04257 131 LLSALLNQQGLDAAWIDAREL-IVTDGG------YLN-AVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTLGR 202 (294)
T ss_pred HHHHHHHhCCCCeEEEchHHe-eEecCC------CCc-eEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCEEECCC
Confidence 355679999999999998663 333222 111 1221 1235677777776 899999994 77888998876
Q ss_pred -ChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHH---HHHHHHHcC
Q 018330 255 -NADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVN---CCIRSLAQG 327 (358)
Q Consensus 255 -~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~---aA~~al~~G 327 (358)
++|++|+.+|..|+|++++++|||||||+.+| .|+ ++|++|+++|+.++...| + |+. +..-+.+.+
T Consensus 203 GGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~G-----a--kv~h~~~~~~a~~~~ 275 (294)
T cd04257 203 NGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFG-----A--KVLHPKTIQPVAKKN 275 (294)
T ss_pred CchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCC-----C--cccCHHHHHHHHHCC
Confidence 79999999999999999999999999999864 254 599999999999997543 2 333 333566789
Q ss_pred CCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 328 VRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 328 v~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
++ ++|.|+..| +..||+|.
T Consensus 276 Ip-i~i~~~~~p----------~~~GT~I~ 294 (294)
T cd04257 276 IP-ILIKNTFNP----------EAPGTLIS 294 (294)
T ss_pred CC-EEEeeCCCC----------CCCCCEeC
Confidence 99 999998765 35789884
|
These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act |
| >cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-19 Score=169.16 Aligned_cols=161 Identities=19% Similarity=0.218 Sum_probs=123.8
Q ss_pred hhh-HHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccCCCCCc
Q 018330 175 GRV-NKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AADEFGQS 251 (358)
Q Consensus 175 g~l-n~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~~~G~~ 251 (358)
|+. +.. +...|++.|+++..+++.+.++++..... ...+.....+.+.++++.+.|||++|+ +.+.+|++
T Consensus 119 GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~-------~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ 191 (288)
T cd04245 119 GEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPG-------NAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDI 191 (288)
T ss_pred hHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCcc-------ccccchhhHHHHHHHHhCCCEEEEeCccccCCCCCE
Confidence 444 443 55688999999999998887777655432 112233467888888999999999994 78889999
Q ss_pred ccc---ChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 018330 252 YNI---NADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLA 325 (358)
Q Consensus 252 ~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~ 325 (358)
.++ .+|+.|+.+|..|+|+.+.++|||||||+++| .|+ +.|++|+|+|+.+++..| ..=|.|+ +..-+.+
T Consensus 192 ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~G--akVlhp~--ai~~a~~ 267 (288)
T cd04245 192 KTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAG--FSVFHDE--ALIPAIE 267 (288)
T ss_pred EEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCC--CcccCHH--HHHHHHH
Confidence 998 99999999999999999999999999999854 244 599999999999997533 1123333 4445567
Q ss_pred cCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 326 QGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 326 ~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+++ ++|.|...| +..||+|.
T Consensus 268 ~~Ip-i~v~n~~~p----------~~~GT~I~ 288 (288)
T cd04245 268 AGIP-INIKNTNHP----------EAPGTLIV 288 (288)
T ss_pred CCCc-EEEeeCCCC----------CCCCceeC
Confidence 7999 999997665 35799884
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. |
| >TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=175.22 Aligned_cols=221 Identities=19% Similarity=0.254 Sum_probs=143.4
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcC--CC--------ccc---cCCc---
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFG--IE--------PVF---RDGL--- 158 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~g--i~--------~~~---~~g~--- 158 (358)
++|+||||+++.+ . +..+++-|..+. .+.++|+|.|+-..++..|.++. .. ..+ ...+
T Consensus 1 m~V~KFGGsSv~~---~--~~~v~~ii~~~~-~~~~~vVVVSA~~gvTd~L~~~~~~~~~~~l~~i~~~h~~~~~~L~~~ 74 (327)
T TIGR02078 1 MIVVKFGGSSVRY---A--FEEALELVKSLS-EEKRVIVVVSALKGITDCLIRYANTFDKSAALEIEEIYEEFAKELGVD 74 (327)
T ss_pred CEEEEECCcchHH---H--HHHHHHHHHHHh-cCCCEEEEeCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3699999999998 4 355555555433 47799999999433333332211 00 000 0001
Q ss_pred ---------------ccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeec-CCC-CCCCCccccee
Q 018330 159 ---------------RVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARP-SPN-SDKLGFVGEVA 221 (358)
Q Consensus 159 ---------------rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~-~~~-~~d~g~~g~v~ 221 (358)
+...+...+. + .-....+...|-..|+++..+++++. +.+.. .++ ..++ +..
T Consensus 75 ~~~~~~~l~~~~~~~~l~~~~~~d~---I--~s~GE~lSa~Lla~gi~a~~vd~~~~--i~t~~~~~~a~~~~----~~~ 143 (327)
T TIGR02078 75 LNILSPYLKELFNPPDLPKEALRDY---I--LSLGERLSAVIFAEGINGKVVDPWDI--FFAKGDFGNAFIDI----KKS 143 (327)
T ss_pred hhhhHHHHHHHHhhhccCChHHHHH---H--HHHHHHHHHHHHHccCCcEEEcHHHH--hccCCcCCceeech----hhh
Confidence 1111111111 1 11233455556667999988887543 33322 110 0111 112
Q ss_pred ecCHHHHHHHHhCCCeEEEcCCccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccc
Q 018330 222 RVDPTVIEPLVNSGHIPVIASVAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEI 295 (358)
Q Consensus 222 ~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I 295 (358)
..+.+.+..+++.|.|||++|+..+.+|...++ ++|++|+.+|..|+|++++++|||||||+++|. |+ ++|+++
T Consensus 144 ~~~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~l 223 (327)
T TIGR02078 144 KRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYL 223 (327)
T ss_pred HhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEcccc
Confidence 456788889999999999999644778877765 899999999999999999999999999998543 33 589999
Q ss_pred cHHHHHHHHhCCCCCCCcH-HHHHHHHHHHHcCCCEEEEEeCCC
Q 018330 296 DIKGVKKMIEDGKVGGGMI-PKVNCCIRSLAQGVRTASIIDGRV 338 (358)
Q Consensus 296 ~~~e~~~l~~~~~vtGGM~-~Kv~aA~~al~~Gv~~v~Ii~G~~ 338 (358)
+++|+.++.. .||. .+.+++..+.+.|++ ++|.|...
T Consensus 224 sy~Ea~ela~-----~Gakvlhp~a~~~a~~~~Ip-i~I~~t~~ 261 (327)
T TIGR02078 224 SYEEIKIAAK-----LGMKALQWKAADLAKEYKIP-VLFGRTRD 261 (327)
T ss_pred CHHHHHHHHH-----CCchhhHHHHHHHHHHCCCe-EEEEeCCC
Confidence 9999988754 3675 566677777778998 99988654
|
This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between. |
| >PRK09084 aspartate kinase III; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=173.59 Aligned_cols=234 Identities=19% Similarity=0.234 Sum_probs=149.2
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECCh-HHHhHHHHHcCCC---ccc--------------cC
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGG-PEINFWLKRFGIE---PVF--------------RD 156 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l~~~gi~---~~~--------------~~ 156 (358)
++|.||||+++.+ .+.+..+++-|.. .+.++|+|.++- ...+.+++..... ..+ .+
T Consensus 1 m~V~KFGGtSv~~---~e~i~~v~~ii~~---~~~~~vvVVSA~~~~Td~L~~~~~~~~~~~~~~~~~~~i~~~h~~~~~ 74 (448)
T PRK09084 1 LVVAKFGGTSVAD---FDAMNRSADIVLS---NPNTRLVVLSASAGVTNLLVALAEGAEPGDERLALLDEIRQIQYAILD 74 (448)
T ss_pred CEEEEECccCcCC---HHHHHHHHHHHhc---CCCCEEEEEcCCCCchHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 4799999999999 6544555555442 578899999994 4344433221100 000 00
Q ss_pred Cccc-------------------------CCHHHHHHHHHHH-hhhhHH--HHHHHHHHcCCeeEeecCCCccEEEeecC
Q 018330 157 GLRV-------------------------TDANTMEIVSMVL-VGRVNK--SLVSLINKAGATAVGLSGMDGRLFTARPS 208 (358)
Q Consensus 157 g~rv-------------------------t~~~~~~~v~~vl-~g~ln~--~lv~~L~~~Gi~av~lsg~d~~ll~a~~~ 208 (358)
.+.. .++... .+++ .|+.-. .+...|++.|+++..+++.+. +++....
T Consensus 75 ~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~---d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~-i~t~~~~ 150 (448)
T PRK09084 75 RLGDPNVVREEIERLLENITVLAEAASLATSPALT---DELVSHGELMSTLLFVELLRERGVQAEWFDVRKV-MRTDDRF 150 (448)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHhhhhcCChhhh---hhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHe-EEecCCC
Confidence 0000 011111 1111 344432 467789999999999988554 4433221
Q ss_pred CCC-CCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccc
Q 018330 209 PNS-DKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILE 283 (358)
Q Consensus 209 ~~~-~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~ 283 (358)
+.. .++ ........+.+..+++.+ |||++| ++.+.+|++..+ ++|++|+.+|..|+|+.++++|||||||+
T Consensus 151 ~~~~~~~---~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t 226 (448)
T PRK09084 151 GRAEPDV---AALAELAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYT 226 (448)
T ss_pred CcccccH---HHHHHHHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 110 000 011112234566677888 999999 578899998877 99999999999999999999999999999
Q ss_pred cccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 284 NRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 284 ~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+|. |+ ++|++|+++|+.++...|. .=+.| .+...+.+.+++ ++|.|+..|+ ..||+|.
T Consensus 227 ~dP~~~~~a~~i~~is~~ea~ela~~Ga--~vlh~--~~~~~~~~~~i~-i~i~~~~~~~----------~~GT~I~ 288 (448)
T PRK09084 227 TDPRIVPAAKRIDEISFEEAAEMATFGA--KVLHP--ATLLPAVRSNIP-VFVGSSKDPE----------AGGTWIC 288 (448)
T ss_pred CCCCCCCCCeEcccCCHHHHHHHHhCCC--cccCH--HHHHHHHHcCCc-EEEEeCCCCC----------CCceEEe
Confidence 8642 44 5999999999999976542 00111 233445677999 9999987663 4577764
|
|
| >PRK05925 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-18 Score=173.74 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=112.3
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccce--eecCHHHHHHHHhCCCeEEEcCC-ccCCCCCcccc--
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEV--ARVDPTVIEPLVNSGHIPVIASV-AADEFGQSYNI-- 254 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v--~~i~~~~I~~lL~~G~IPVi~gv-~~~~~G~~~~i-- 254 (358)
.+...|++.|+++..+++++. +++...... .++ ..+........++.+.|||++|+ +.+.+|++..+
T Consensus 116 l~a~~L~~~Gi~a~~ld~~~~-i~t~~~~~~-------a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLgr 187 (440)
T PRK05925 116 LICAYCCTYVLPLEFLEARQV-ILTDDQYLR-------AVPDLALMQTAWHELALQEDAIYIMQGFIGANSSGKTTVLGR 187 (440)
T ss_pred HHHHHHHhCCCCeEEEcHHHh-EeecCCccc-------cccCHHHHHHHHHHhhccCCcEEEecCcceeCCCCCEEEecc
Confidence 356688999999999987654 444332221 111 12223333335567789999995 88899998766
Q ss_pred -ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCC--CCCCcHHHHHHHHHHHHcCC
Q 018330 255 -NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGK--VGGGMIPKVNCCIRSLAQGV 328 (358)
Q Consensus 255 -~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~--vtGGM~~Kv~aA~~al~~Gv 328 (358)
++|++|+.+|..|+|+.++++|||||||+++|. |+ ++|++++++|+.++...|. ..++| ...+.+.|+
T Consensus 188 GgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~------~~~a~~~~I 261 (440)
T PRK05925 188 GGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPM------LKPCVRAGI 261 (440)
T ss_pred CcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHH------HHHHHHCCC
Confidence 999999999999999999999999999998552 44 5999999999999875432 34444 345667899
Q ss_pred CEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 329 RTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 329 ~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+ ++|.|++.|+ ..||+|.
T Consensus 262 p-i~I~~~~~p~----------~~GT~i~ 279 (440)
T PRK05925 262 P-IFVTSTFDVT----------KGGTWIY 279 (440)
T ss_pred c-EEEecCCCCC----------CCccEEe
Confidence 9 9999998774 3577774
|
|
| >PRK09034 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.2e-18 Score=170.38 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=116.8
Q ss_pred hhh-HH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccCCCCCc
Q 018330 175 GRV-NK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAADEFGQS 251 (358)
Q Consensus 175 g~l-n~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~ 251 (358)
|+. +. .+...|++.|+++..+++.+.++++....+ ...+.....+.+..++..+.|||++| ++.+.+|++
T Consensus 119 GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~-------~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~ 191 (454)
T PRK09034 119 GEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPG-------NAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQI 191 (454)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcC-------ceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCCE
Confidence 544 33 356689999999999998887777654322 12233345677777777888999999 578889998
Q ss_pred ccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 018330 252 YNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLA 325 (358)
Q Consensus 252 ~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~ 325 (358)
.++ ++|+.|+.+|.+|+|+++.++|||||||+.+|. |+ +.+++|+++|+.+|+..|. .=|.|+ +..-+.+
T Consensus 192 ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Ga--kvlhp~--ai~~a~~ 267 (454)
T PRK09034 192 VTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGF--SVFHDE--ALIPAYR 267 (454)
T ss_pred EecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCc--ccCCHH--HHHHHHH
Confidence 877 899999999999999999999999999998542 44 5999999999999976431 123343 4445667
Q ss_pred cCCCEEEEEeCCCc
Q 018330 326 QGVRTASIIDGRVE 339 (358)
Q Consensus 326 ~Gv~~v~Ii~G~~~ 339 (358)
.+++ ++|.|...|
T Consensus 268 ~~Ip-i~v~~~~~p 280 (454)
T PRK09034 268 GGIP-INIKNTNNP 280 (454)
T ss_pred cCCC-EEEEcCCCC
Confidence 7999 999997655
|
|
| >cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.9e-18 Score=160.91 Aligned_cols=154 Identities=23% Similarity=0.323 Sum_probs=110.2
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCccccee-----ecCHHHHHHHHhCCCeEEEcC-CccCCCCCccc
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVA-----RVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYN 253 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~-----~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~ 253 (358)
.+...|++.|+++..+++.+. +++... ++. .++. ....+.++. +..+.|||++| ++.+.+|++..
T Consensus 127 lla~~L~~~Gi~a~~ld~~~~-i~t~~~------~~~-a~~~~~~~~~~~~~~~~~-~~~~~v~Vv~Gf~g~~~~G~~tt 197 (292)
T cd04258 127 LFSEALREQGVPAEWFDVRTV-LRTDSR------FGR-AAPDLNALAELAAKLLKP-LLAGTVVVTQGFIGSTEKGRTTT 197 (292)
T ss_pred HHHHHHHhCCCCeEEEchHHe-EEecCC------Ccc-ccccHHHHHHHHHHHHHH-hhcCCEEEECCccccCCCCCEEe
Confidence 356688999999999988665 444322 111 1111 011222333 34678999999 47888899886
Q ss_pred c---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcC
Q 018330 254 I---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQG 327 (358)
Q Consensus 254 i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~G 327 (358)
+ ++|++|+.+|..|+|++++++|||+|||+.+|. |+ ++|++|+++|+.+++..|. .=+.| ++..-+.+.+
T Consensus 198 LGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Ga--kvlhp--~a~~~~~~~~ 273 (292)
T cd04258 198 LGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGA--KVLHP--ATLLPAIRKN 273 (292)
T ss_pred cCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCC--cccCH--HHHHHHHHcC
Confidence 5 899999999999999999999999999998642 44 6999999999999976432 11222 2445566779
Q ss_pred CCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 328 VRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 328 v~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
++ ++|.|...| +..||+|+
T Consensus 274 ip-i~i~~~~~p----------~~~GT~I~ 292 (292)
T cd04258 274 IP-VFVGSSKDP----------EAGGTLIT 292 (292)
T ss_pred Cc-EEEEeCCCC----------CCCCceeC
Confidence 99 999987655 45799885
|
AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. |
| >PLN02551 aspartokinase | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-18 Score=172.91 Aligned_cols=236 Identities=19% Similarity=0.282 Sum_probs=153.0
Q ss_pred CCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHc------CCCc-cc----------
Q 018330 93 GKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRF------GIEP-VF---------- 154 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~------gi~~-~~---------- 154 (358)
+.++|.||||+++.+ .+.+..+++-|... .+.++|+|.++ |...+.+++.. +... .+
T Consensus 51 ~~~~V~KFGGtSv~~---~e~i~~v~~iI~~~--~~~~~vVVvSA~~~~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~ 125 (521)
T PLN02551 51 QLTVVMKFGGSSVAS---AERMREVADLILSF--PDERPVVVLSAMGKTTNNLLLAGEKAVSCGVTNVSEIEELSAIREL 125 (521)
T ss_pred CceEEEEECCCccCC---HHHHHHHHHHHHhc--CCCCEEEEEcCCCCchHHHHHHHHHHhhccccchhhHHHHHHHHHH
Confidence 357899999999999 65556666655532 24568888888 44444443210 1000 00
Q ss_pred c-------------------------CCccc---CCHHHHHHHHHHHhhhhH-H-HHHHHHHHcCCeeEeecCCCccEEE
Q 018330 155 R-------------------------DGLRV---TDANTMEIVSMVLVGRVN-K-SLVSLINKAGATAVGLSGMDGRLFT 204 (358)
Q Consensus 155 ~-------------------------~g~rv---t~~~~~~~v~~vl~g~ln-~-~lv~~L~~~Gi~av~lsg~d~~ll~ 204 (358)
+ .|+.. .++...+.+ +-.|+.. . .+...|++.|+++..+++++.++++
T Consensus 126 h~~~~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~i--ls~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t 203 (521)
T PLN02551 126 HLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYL--VSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFIT 203 (521)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHH--HhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEe
Confidence 0 01000 011111111 1124443 2 3556789999999999998887777
Q ss_pred eecCCCCCCCCcccceeecCHHHHHHHH-----hCCCeEEEcC-CccC-CCCCcccc---ChHHHHHHHHHHcCCCeEEE
Q 018330 205 ARPSPNSDKLGFVGEVARVDPTVIEPLV-----NSGHIPVIAS-VAAD-EFGQSYNI---NADTVAGELAAALGAEKLIL 274 (358)
Q Consensus 205 a~~~~~~~d~g~~g~v~~i~~~~I~~lL-----~~G~IPVi~g-v~~~-~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~ 274 (358)
..... ...+.....+.+...+ +.+.|||++| ++.+ .+|++.++ .+|+.|+.+|..|+|+++.+
T Consensus 204 ~~~~~-------~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I 276 (521)
T PLN02551 204 TDDFT-------NADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQV 276 (521)
T ss_pred cCCCC-------ccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEE
Confidence 55332 1222233444454444 3568999999 4788 89999877 89999999999999999999
Q ss_pred eeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCC
Q 018330 275 LTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAG 351 (358)
Q Consensus 275 lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g 351 (358)
+|||||||+.+|. |+ +.|++|+|+|+.+|+..|. .=+.|+ +..-+.+.+++ ++|-|-..| +.
T Consensus 277 ~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~Ga--kVlhp~--ai~pa~~~~Ip-i~vknt~~p----------~~ 341 (521)
T PLN02551 277 WKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGA--QVLHPQ--SMRPAREGDIP-VRVKNSYNP----------TA 341 (521)
T ss_pred EeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCC--cccCHH--HHHHHHHCCce-EEEEecCCC----------CC
Confidence 9999999998542 44 5999999999999976432 112233 44556778999 999885443 45
Q ss_pred CceEEc
Q 018330 352 AGTMIT 357 (358)
Q Consensus 352 ~GT~I~ 357 (358)
.||+|.
T Consensus 342 ~GT~I~ 347 (521)
T PLN02551 342 PGTLIT 347 (521)
T ss_pred CCcEEe
Confidence 677774
|
|
| >PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-18 Score=184.05 Aligned_cols=235 Identities=18% Similarity=0.204 Sum_probs=154.9
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECCh-HHHhHHHHHcCC--Cccc--------------cC
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGG-PEINFWLKRFGI--EPVF--------------RD 156 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l~~~gi--~~~~--------------~~ 156 (358)
+++|.||||+++.+ .+.+..+++-|..-.+.|.++|+|.++- ...+.+++.... ...+ .+
T Consensus 8 ~~~V~KFGGtSv~~---~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 84 (861)
T PRK08961 8 RWVVLKFGGTSVSR---RHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGAGDSASRVAAIRQRHRELLA 84 (861)
T ss_pred CcEEEEECccccCC---HHHHHHHHHHHHhhcccCCCEEEEEeCCCCchHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 57899999999999 6555677776665445688999999984 334443222110 0000 00
Q ss_pred CcccCCH----HHHHHHH------------------HH-Hhhhh-HH-HHHHHHHHcCCeeEeecCCCccEEEeecC--C
Q 018330 157 GLRVTDA----NTMEIVS------------------MV-LVGRV-NK-SLVSLINKAGATAVGLSGMDGRLFTARPS--P 209 (358)
Q Consensus 157 g~rvt~~----~~~~~v~------------------~v-l~g~l-n~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~--~ 209 (358)
.+..... +.++.+. ++ ..|+. +. .+...|++.|+++..+++.+. +.+.+. .
T Consensus 85 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~--~~~~~~~~~ 162 (861)
T PRK08961 85 ELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREW--LTALPQPNQ 162 (861)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHh--EeecCcccc
Confidence 0000000 0000000 10 12333 23 356789999999999987555 333221 0
Q ss_pred -CCCCCCcccce-eecCHHHHHHHHhCC-CeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeecccccc
Q 018330 210 -NSDKLGFVGEV-ARVDPTVIEPLVNSG-HIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGIL 282 (358)
Q Consensus 210 -~~~d~g~~g~v-~~i~~~~I~~lL~~G-~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~ 282 (358)
....+. ...+ ...+.+.++.+++.+ .|||++| ++.+.+|++..+ ++|++|+.+|..|+|++++++|||+|||
T Consensus 163 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~ 241 (861)
T PRK08961 163 SEWSQYL-SVSCQWQSDPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMF 241 (861)
T ss_pred ccccccc-cceecHhhHHHHHHHHhccCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence 000010 0011 113455667777766 4999999 478889998776 9999999999999999999999999999
Q ss_pred ccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCc
Q 018330 283 ENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVE 339 (358)
Q Consensus 283 ~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~ 339 (358)
+++|. |+ ++|++|+++|+.+++. .|++..+.+++..+.+.|++ ++|.|+..|
T Consensus 242 t~dP~~~~~a~~i~~ls~~e~~el~~----~g~~v~~~~a~~~a~~~~i~-i~v~~~~~~ 296 (861)
T PRK08961 242 SANPKEVPDARLLTRLDYDEAQEIAT----TGAKVLHPRSIKPCRDAGIP-MAILDTERP 296 (861)
T ss_pred cCCCCCCCCceEecccCHHHHHHHHH----CCCeEECHHHHHHHHHCCCC-EEEEeCCCC
Confidence 97542 44 5999999999999976 36788888899899999999 999998765
|
|
| >cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-17 Score=157.33 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=108.3
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh-CCCeEEEcCC-ccCCCCCcccc---
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN-SGHIPVIASV-AADEFGQSYNI--- 254 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~-~G~IPVi~gv-~~~~~G~~~~i--- 254 (358)
.+...|++.|+++..+.+.+ ++.........+-.+. ..+.......+.+ .+.|||++|+ +.+.+|++.++
T Consensus 139 l~a~~L~~~Gi~a~~ld~~~--~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRg 213 (306)
T cd04247 139 FMAAVLRDRGVDAEYVDLSH--IVDLDFSIEALDQTFY---DELAQVLGEKITACENRVPVVTGFFGNVPGGLLSQIGRG 213 (306)
T ss_pred HHHHHHHhCCCCeEEEcHHH--heecCCCccccccchh---HHHHHHHHHHhhccCCceEEeeccEecCCCCCeEEeCCC
Confidence 35668899999998887643 3333320000000000 0111222222332 5789999994 77888998877
Q ss_pred ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEE
Q 018330 255 NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTA 331 (358)
Q Consensus 255 ~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v 331 (358)
++|++|+.+|..|+|++++++|||+|||+.+|+ |+ ++|++|+++|+.+++..|. .=+.| ++..-+.+.+++ +
T Consensus 214 GsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~Ga--kVlHp--~ti~pa~~~~Ip-i 288 (306)
T cd04247 214 YTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGS--EVIHP--FTMEQVIKARIP-I 288 (306)
T ss_pred chHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcC--cccCH--HHHHHHHHcCCc-E
Confidence 899999999999999999999999999998543 44 5999999999999976331 01122 244556678999 9
Q ss_pred EEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 332 SIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 332 ~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+|.|-..| +..||+|++
T Consensus 289 ~i~nt~~P----------~~~GT~I~~ 305 (306)
T cd04247 289 RIKNVENP----------RGEGTVIYP 305 (306)
T ss_pred EEecCCCC----------CCCCcEEcC
Confidence 99885544 467999974
|
Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. |
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=172.75 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=117.0
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccce-eecCHHHHHHHH-hCCCeEEEcCC-ccCCCCCcccc--
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEV-ARVDPTVIEPLV-NSGHIPVIASV-AADEFGQSYNI-- 254 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v-~~i~~~~I~~lL-~~G~IPVi~gv-~~~~~G~~~~i-- 254 (358)
.+...|++.|+++..+++++. +++... |+ ..++ .....+.+++++ +.+.|||++|+ +.+.+|++.++
T Consensus 133 lla~~L~~~Gi~a~~ld~~~~-i~t~~~------~~-~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGR 204 (819)
T PRK09436 133 IMAAVLEARGHDVTVIDPREL-LLADGH------YL-ESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKGELVTLGR 204 (819)
T ss_pred HHHHHHHhCCCCeEEECHHHe-EEecCC------CC-CceechHhhHHHHHHHHhcCCcEEEecCcccCCCCCCEEEeCC
Confidence 356688999999999987543 333221 21 1122 122345566554 46889999994 77889998887
Q ss_pred -ChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCE
Q 018330 255 -NADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRT 330 (358)
Q Consensus 255 -~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~ 330 (358)
++|++|+.+|..|+|+.++++|||||||+.+| .|+ ++|++++++|+.++... |-+..+.+++.-+.+.+++
T Consensus 205 gGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~----G~kvlhp~a~~~a~~~~Ip- 279 (819)
T PRK09436 205 NGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYF----GAKVLHPRTIAPIAQFQIP- 279 (819)
T ss_pred CCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhc----CCccchHHHHHHHHHCCce-
Confidence 59999999999999999999999999999854 344 59999999999999753 4466788888888999999
Q ss_pred EEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 331 ASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 331 v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
++|.|+..|+ ..||+|.
T Consensus 280 i~i~n~~~p~----------~~GT~I~ 296 (819)
T PRK09436 280 CLIKNTFNPQ----------APGTLIG 296 (819)
T ss_pred EEEccCCCCC----------CCceEEE
Confidence 9999987653 4577764
|
|
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=167.92 Aligned_cols=154 Identities=15% Similarity=0.203 Sum_probs=113.6
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccce-eecCHHHHHHHHhCC--CeEEEcCC-ccCCCCCcccc-
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEV-ARVDPTVIEPLVNSG--HIPVIASV-AADEFGQSYNI- 254 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v-~~i~~~~I~~lL~~G--~IPVi~gv-~~~~~G~~~~i- 254 (358)
.+...|++.|+++..+++++ ++++.... ...+ .....+.++.++..+ .|||++|+ +.+.+|++.++
T Consensus 136 lla~~L~~~G~~a~~ld~~~--~i~~~~~~-------~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLG 206 (810)
T PRK09466 136 LMAALLNQQGLPAAWLDARS--FLRAERAA-------QPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGETVLLG 206 (810)
T ss_pred HHHHHHHhCCCCcEEEcHHH--heecCCCC-------CcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCEEEcC
Confidence 35668999999999998744 55544321 1222 222467788877654 89999994 78889998877
Q ss_pred --ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCC
Q 018330 255 --NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVR 329 (358)
Q Consensus 255 --~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~ 329 (358)
.+|+.|+.+|..|+|+++.++|||||||+.+|. |+ ++|++|+|+|+.+|+..|. .=+.|+ +..-+.+.+++
T Consensus 207 RGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~Ga--kVlHp~--ti~pa~~~~Ip 282 (810)
T PRK09466 207 RNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAA--PVLHAR--TLQPVSGSDID 282 (810)
T ss_pred CChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCc--cccCHH--HHHHHHHcCCe
Confidence 799999999999999999999999999998542 33 5999999999999987542 112233 44455677999
Q ss_pred EEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 330 TASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 330 ~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
++|.|-..| +..||+|.
T Consensus 283 -i~V~ntf~p----------~~~GT~I~ 299 (810)
T PRK09466 283 -LQLRCSYQP----------EQGSTRIE 299 (810)
T ss_pred -EEEecCCCC----------CCCceEEe
Confidence 999885443 34577773
|
|
| >COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=120.82 Aligned_cols=117 Identities=23% Similarity=0.390 Sum_probs=90.9
Q ss_pred HhCCCeEEEcCC----ccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCC
Q 018330 232 VNSGHIPVIASV----AADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307 (358)
Q Consensus 232 L~~G~IPVi~gv----~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~ 307 (358)
...+.+||+-|. -.|+--..+-+.+|.++.++|+++++.++++.|||||||+.++++ +++++|+.+|+... .
T Consensus 90 i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~~-kLv~eI~A~dl~~~---~ 165 (212)
T COG2054 90 IKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPKG-KLVREIRASDLKTG---E 165 (212)
T ss_pred cCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCcc-hhhhhhhHhhcccC---c
Confidence 456677888772 256667788899999999999999999999999999999985443 89999998888762 1
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 308 ~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
..-.+..|++. .+.+.. ++++||+.|+++++.+-..+.+||+|.|
T Consensus 166 t~vD~~~P~Ll-----~k~~m~-~~Vvng~~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 166 TSVDPYLPKLL-----VKYKMN-CRVVNGKEPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred ccccchhhHHH-----HHcCCc-eEEECCCCHHHHHHHHhccccceEEEeC
Confidence 23345667753 456767 9999999999987755333458999976
|
|
| >PRK09181 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-13 Score=135.74 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=103.8
Q ss_pred HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh----CCCeEEEcCCccCCCCCcccc--
Q 018330 181 LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN----SGHIPVIASVAADEFGQSYNI-- 254 (358)
Q Consensus 181 lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~----~G~IPVi~gv~~~~~G~~~~i-- 254 (358)
+...|++.|+++..++..+++. . .++ . ..+.+...++ .+.|||++|+..+.+|++.++
T Consensus 154 la~~L~~~Gi~a~~ld~~~~~~------~--~~~-------~-~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTLGR 217 (475)
T PRK09181 154 TALLLQNRGVNARFVDLTGWDD------D--DPL-------T-LDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTFDR 217 (475)
T ss_pred HHHHHHhCCCCeEEeccccccC------C--ccc-------c-hHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEecCC
Confidence 4557889999988765322210 0 011 1 2456666555 478999999866678998877
Q ss_pred -ChHHHHHHHHHHcCCCeEEEeeccccccccccc----cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCC
Q 018330 255 -NADTVAGELAAALGAEKLILLTDVAGILENRED----PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGV 328 (358)
Q Consensus 255 -~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d----p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv 328 (358)
.+|+.|+.+|.+|+|+++.+||||+ ||+.+|. |+ +.|++|+|+|+.+|+..|. .=+.| ++..-+.+.++
T Consensus 218 GGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GA--kVLHp--~ti~pa~~~~I 292 (475)
T PRK09181 218 GYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGM--EAIHP--KAAKGLRQAGI 292 (475)
T ss_pred ChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCc--hhcCH--HHHHHHHHcCC
Confidence 8999999999999999999999997 9998542 33 5899999999999986542 11222 24455667899
Q ss_pred CEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 329 RTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 329 ~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+ ++|.|-..| +..||+|.
T Consensus 293 p-i~V~nt~~p----------~~~GT~I~ 310 (475)
T PRK09181 293 P-LRIKNTFEP----------EHPGTLIT 310 (475)
T ss_pred e-EEEecCCCC----------CCCCeEEe
Confidence 9 999885543 34677774
|
|
| >cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-12 Score=125.25 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=102.1
Q ss_pred HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh----CCCeEEEcCCccCCCCCcccc--
Q 018330 181 LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN----SGHIPVIASVAADEFGQSYNI-- 254 (358)
Q Consensus 181 lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~----~G~IPVi~gv~~~~~G~~~~i-- 254 (358)
+...|++.|+++.-++...++. .. ++ + ..+.+.+.+. .+.|||++|++.+.+|++..+
T Consensus 148 ~a~~L~~~Gi~A~~vD~~~~~~--~~------~~------t--~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itTLGR 211 (304)
T cd04248 148 TALLLQNRGVNARFVDLSGWRD--SG------DM------T--LDERISEAFRDIDPRDELPIVTGYAKCAEGLMREFDR 211 (304)
T ss_pred HHHHHHHCCCCeEEECcccccc--cC------CC------C--cHHHHHHHHHhhccCCcEEEeCCccCCCCCCEEEcCC
Confidence 4457788999887654322210 00 01 0 2234444343 578999999877778998876
Q ss_pred -ChHHHHHHHHHHcCCCeEEEeeccccccccccc----cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCC
Q 018330 255 -NADTVAGELAAALGAEKLILLTDVAGILENRED----PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGV 328 (358)
Q Consensus 255 -~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d----p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv 328 (358)
.+|+.|+.+|..|+|+++.++|||+ ||+.+|. |+ +.|++++|+|+.+|+..|. .-+.|+ +..-+.+.++
T Consensus 212 GGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~Ga--kvLHP~--ai~pa~~~~I 286 (304)
T cd04248 212 GYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGM--EAIHPK--AAKGLRQAGI 286 (304)
T ss_pred CcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcCh--hhcCHH--HHHHHHHcCC
Confidence 8999999999999999999999996 9998542 23 5899999999999976531 112233 5556667799
Q ss_pred CEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 329 RTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 329 ~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+ ++|.|-..| +..||+|+
T Consensus 287 P-i~Vkntf~P----------~~~GTlIt 304 (304)
T cd04248 287 P-LRVKNTFEP----------DHPGTLIT 304 (304)
T ss_pred e-EEEecCCCC----------CCCCceeC
Confidence 9 999885544 45799985
|
Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. |
| >KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=106.30 Aligned_cols=110 Identities=18% Similarity=0.234 Sum_probs=77.4
Q ss_pred CCCeEEEcC-Cc-cCCCCCccc---cChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHh
Q 018330 234 SGHIPVIAS-VA-ADEFGQSYN---INADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIE 305 (358)
Q Consensus 234 ~G~IPVi~g-v~-~~~~G~~~~---i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~ 305 (358)
.+.+||++| ++ .-+.|-... ..+|..|+.+|.+|++|.+-.|.|||||++.+|. |+ +++|-++.+|+.++.-
T Consensus 258 en~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaY 337 (559)
T KOG0456|consen 258 ENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAY 337 (559)
T ss_pred CCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHh
Confidence 457999999 45 234444333 3799999999999999999999999999998542 44 6999999999999864
Q ss_pred CCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 306 DGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 306 ~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
-|. -.-.-..+..+.+..++ ++|-|-..| .+.||.|+|
T Consensus 338 fGa----qVlHP~sM~~~~~~~IP-vRvKN~~NP----------~~~GTvI~~ 375 (559)
T KOG0456|consen 338 FGA----QVLHPFSMRPAREGRIP-VRVKNSYNP----------TAPGTVITP 375 (559)
T ss_pred hhh----hhccccccchhhccCcc-eEeecCCCC----------CCCceEecc
Confidence 331 11111122334455777 888774443 478888875
|
|
| >COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.51 E-value=0.41 Score=47.34 Aligned_cols=144 Identities=10% Similarity=-0.120 Sum_probs=83.8
Q ss_pred HhhhHHHHhhcC----CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCC
Q 018330 82 SESLPFIQKFRG----KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDG 157 (358)
Q Consensus 82 ~~a~pyi~~~~~----k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g 157 (358)
|+.+.|...++. ..-+.|+|+.+..+ +. ......+-.+++.++-+++.|||++.-...+-..|.. ..+|
T Consensus 125 r~i~~~~vfs~~~~~~r~~~s~v~~~v~~~---~~--~e~t~s~f~~~~v~~t~ivl~~~~~p~i~e~~i~gn~--i~~G 197 (495)
T COG5630 125 RTGLYHSVFSQESRFFDIGNSNFIPIVKPY---VY--NEETASEFMTKDVVKFMDCLCQGNIPHIDKFFILNNA--IPSG 197 (495)
T ss_pred hhhhhhhhhhhhcccccccccceecccCCC---cc--hhhhHHHHHHHhhhheeeeecCCCCccceeeeecccc--cccc
Confidence 555666554432 45688999988877 31 2234445556678899999999987543322223332 4467
Q ss_pred cccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCe
Q 018330 158 LRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHI 237 (358)
Q Consensus 158 ~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~I 237 (358)
|.+...++. +.+. ...++..+...++..+-+.-+.+ ..+..... ..|++.++++..++ ....+++.-.+
T Consensus 198 -r~~~~h~~~-~~~~-~~~~~~~l~~~~~~~~kR~t~s~---~~l~~~~~---~~de~~~~e~~yh~--~nl~l~r~~l~ 266 (495)
T COG5630 198 -RNDNAHVFI-LSQE-LEHLSSSLSHNISTLTKREPRSQ---NLLHRMEV---KKDEISSLECEYHD--ENLLLMDKVLS 266 (495)
T ss_pred -cccccchhh-HHHH-HHHHHHHHhhccccccccCcccc---chhhhhhh---hhcccccccccccC--hHHHHHHHHhh
Confidence 777777665 4444 23444444444444444332222 22222222 34677788888887 44556787778
Q ss_pred EEEcCC
Q 018330 238 PVIASV 243 (358)
Q Consensus 238 PVi~gv 243 (358)
|+.+..
T Consensus 267 ~l~a~a 272 (495)
T COG5630 267 NLAATA 272 (495)
T ss_pred hcchhh
Confidence 887763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 358 | ||||
| 2rd5_A | 298 | Structural Basis For The Regulation Of N-Acetylglut | 1e-110 | ||
| 2jj4_A | 321 | The Complex Of Pii And Acetylglutamate Kinase From | 6e-86 | ||
| 2bty_A | 282 | Acetylglutamate Kinase From Thermotoga Maritima Com | 6e-58 | ||
| 2buf_A | 300 | Arginine Feed-Back Inhibitable Acetylglutamate Kina | 2e-54 | ||
| 2ap9_A | 299 | Crystal Structure Of Acetylglutamate Kinase From My | 2e-45 | ||
| 3u6u_A | 269 | Crystal Structure Of The Putative Acetylglutamate K | 2e-21 | ||
| 3l86_A | 279 | The Crystal Structure Of Smu.665 From Streptococcus | 2e-17 | ||
| 1gs5_A | 258 | N-Acetyl-L-Glutamate Kinase From Escherichia Coli C | 2e-17 | ||
| 1gsj_A | 258 | Selenomethionine Substituted N-Acetyl-L-Glutamate K | 7e-16 | ||
| 3t7b_A | 260 | Crystal Structure Of N-Acetyl-L-Glutamate Kinase Fr | 2e-15 | ||
| 3zzf_A | 307 | Crystal Structure Of The Amino Acid Kinase Domain F | 6e-15 | ||
| 3zzi_A | 464 | Crystal Structure Of A Tetrameric Acetylglutamate K | 8e-15 | ||
| 3s6k_A | 467 | Crystal Structure Of Xcnags Length = 467 | 2e-13 | ||
| 3s6h_A | 460 | Crystal Structure Of Native MmnagsK Length = 460 | 1e-09 | ||
| 3s7y_A | 461 | Crystal Structure Of Mmnags In Space Group P3121 At | 1e-09 | ||
| 3s6g_A | 460 | Crystal Structures Of Seleno-Substituted Mutant Mmn | 2e-08 | ||
| 2r8v_A | 456 | Native Structure Of N-Acetylglutamate Synthase From | 2e-04 |
| >pdb|2RD5|A Chain A, Structural Basis For The Regulation Of N-Acetylglutamate Kinase By Pii In Arabidopsis Thaliana Length = 298 | Back alignment and structure |
|
| >pdb|2JJ4|A Chain A, The Complex Of Pii And Acetylglutamate Kinase From Synechococcus Elongatus Pcc7942 Length = 321 | Back alignment and structure |
|
| >pdb|2BTY|A Chain A, Acetylglutamate Kinase From Thermotoga Maritima Complexed With Its Inhibitor Arginine Length = 282 | Back alignment and structure |
|
| >pdb|2BUF|A Chain A, Arginine Feed-Back Inhibitable Acetylglutamate Kinase Length = 300 | Back alignment and structure |
|
| >pdb|2AP9|A Chain A, Crystal Structure Of Acetylglutamate Kinase From Mycobacterium Tuberculosis Cdc1551 Length = 299 | Back alignment and structure |
|
| >pdb|3U6U|A Chain A, Crystal Structure Of The Putative Acetylglutamate Kinase From Thermus Thermophilus Length = 269 | Back alignment and structure |
|
| >pdb|3L86|A Chain A, The Crystal Structure Of Smu.665 From Streptococcus Mutans Ua159 Length = 279 | Back alignment and structure |
|
| >pdb|1GS5|A Chain A, N-Acetyl-L-Glutamate Kinase From Escherichia Coli Complexed With Its Substrate N-Acetylglutamate And Its Substrate Analog Amppnp Length = 258 | Back alignment and structure |
|
| >pdb|1GSJ|A Chain A, Selenomethionine Substituted N-Acetyl-L-Glutamate Kinase From Escherichia Coli Complexed With Its Substrate N- Acetyl-L-Glutamate And Its Substrate Analog Amppnp Length = 258 | Back alignment and structure |
|
| >pdb|3T7B|A Chain A, Crystal Structure Of N-Acetyl-L-Glutamate Kinase From Yersinia Pestis Length = 260 | Back alignment and structure |
|
| >pdb|3ZZF|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From Saccharomyces Cerevisiae Acetylglutamate Kinase Complexed With Its Substrate N-Acetylglutamate Length = 307 | Back alignment and structure |
|
| >pdb|3ZZI|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase From Saccharomyces Cerevisiae Length = 464 | Back alignment and structure |
|
| >pdb|3S6K|A Chain A, Crystal Structure Of Xcnags Length = 467 | Back alignment and structure |
|
| >pdb|3S6H|A Chain A, Crystal Structure Of Native MmnagsK Length = 460 | Back alignment and structure |
|
| >pdb|3S7Y|A Chain A, Crystal Structure Of Mmnags In Space Group P3121 At 4.3 A Resolution Length = 461 | Back alignment and structure |
|
| >pdb|3S6G|A Chain A, Crystal Structures Of Seleno-Substituted Mutant Mmnags In Space Group P212121 Length = 460 | Back alignment and structure |
|
| >pdb|2R8V|A Chain A, Native Structure Of N-Acetylglutamate Synthase From Neisseria Gonorrhoeae Length = 456 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} Length = 298 | Back alignment and structure |
|---|
Score = 454 bits (1170), Expect = e-162
Identities = 230/300 (76%), Positives = 259/300 (86%), Gaps = 3/300 (1%)
Query: 59 SLTSAATAVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVV 118
++++ + T ++RV+ILSESLPFIQKFRGKTIVVKYGGAAM L +SVV
Sbjct: 2 TVSTPPSIATGNAPSPDYRVEILSESLPFIQKFRGKTIVVKYGGAAMT---SPELKSSVV 58
Query: 119 KDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVN 178
DLVLL+ VGLRP+LVHGGGP+IN +LK+ I FRDGLRVTDA TMEIVSMVLVG+VN
Sbjct: 59 SDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVN 118
Query: 179 KSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIP 238
K+LVSLIN AGATAVGLSG DGRL TARP PNS +LGFVGEVARVDP+V+ PLV+ G+IP
Sbjct: 119 KNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIP 178
Query: 239 VIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIK 298
VIASVAAD+ GQ+YNINADTVAGELAAALGAEKLILLTDVAGILEN+EDP SL+KEIDIK
Sbjct: 179 VIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIK 238
Query: 299 GVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
GVKKMIEDGKV GGMIPKV CCIRSLAQGV+TASIIDGR +HSLL EI++D GAGTMITG
Sbjct: 239 GVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298
|
| >2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A* Length = 321 | Back alignment and structure |
|---|
Score = 448 bits (1156), Expect = e-159
Identities = 189/312 (60%), Positives = 230/312 (73%), Gaps = 4/312 (1%)
Query: 47 SNHRTEITKSSRSLTSAATAVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMK 106
S+H S + + + A RV ILSE+LP++Q+F G+T+VVKYGGAAMK
Sbjct: 3 SSHHHHHHSSGLVPRGSHMSSEFIEAGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMK 62
Query: 107 PNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM 166
++ L +V++D+V L+ VG+RPV+VHGGGPEIN WL R GIEP F +GLRVTDA+TM
Sbjct: 63 ---QEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTM 119
Query: 167 EIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPT 226
E+V MVLVGRVNK +VS IN G AVG G DGRL ARP +GFVGEV V+
Sbjct: 120 EVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEG-IGFVGEVNSVNSE 178
Query: 227 VIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE 286
VIEPL+ G+IPVI+SVAADE GQS+NINADTVAGE+AAAL AEKLILLTD GILE+ +
Sbjct: 179 VIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPK 238
Query: 287 DPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEI 346
P SL+ ++I +++I G VGGGMIPKV+CCIRSLAQGVR A IIDGR+ H+LLLEI
Sbjct: 239 RPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEI 298
Query: 347 LTDAGAGTMITG 358
TDAG GTMI G
Sbjct: 299 FTDAGIGTMIVG 310
|
| >2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2 Length = 282 | Back alignment and structure |
|---|
Score = 436 bits (1124), Expect = e-155
Identities = 132/281 (46%), Positives = 190/281 (67%), Gaps = 7/281 (2%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHG 136
V++L E+LP+I++F GKT V+K+GG+AMK ++N + ++D++LL G++P++VHG
Sbjct: 5 TVNVLLEALPYIKEFYGKTFVIKFGGSAMK---QENAKKAFIQDIILLKYTGIKPIIVHG 61
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GGP I+ +K GIEPVF++G RVTD TMEIV MVLVG++NK +V +N G AVG+
Sbjct: 62 GGPAISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGIC 121
Query: 197 GMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G D +L A +G+VG+V +V+P ++ L+ + +IPVIA V E G SYNINA
Sbjct: 122 GKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINA 181
Query: 257 DTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
DT A E+A +L AEKLILLTDV G+L++ L+ + +++I DG V GGMIPK
Sbjct: 182 DTAAAEIAKSLMAEKLILLTDVDGVLKDG----KLISTLTPDEAEELIRDGTVTGGMIPK 237
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357
V C + ++ GV II+G +EH++LLEI + G GTMI
Sbjct: 238 VECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIK 278
|
| >2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2 Length = 300 | Back alignment and structure |
|---|
Score = 435 bits (1122), Expect = e-154
Identities = 135/302 (44%), Positives = 198/302 (65%), Gaps = 17/302 (5%)
Query: 68 TDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVV 127
T ++ A +LSE+LP+I++F GKT+V+KYGG AM+ + L A +D+VL+ V
Sbjct: 1 TLSRDDAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAME---SEELKAGFARDVVLMKAV 57
Query: 128 GLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINK 187
G+ PV+VHGGGP+I LKR IE F DG+RVTDA TM++V MVL G+VNK +V+LIN+
Sbjct: 58 GINPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINR 117
Query: 188 AGATAVGLSGMDGRLFTARPSPNSDK-----------LGFVGEVARVDPTVIEPLVNSGH 236
G +A+GL+G D L A+ + + +G VGEV V+ ++ LV
Sbjct: 118 HGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDF 177
Query: 237 IPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEID 296
IPVIA + G+SYNINAD VAG++A AL AEKL+LLT++AG++ + ++ +
Sbjct: 178 IPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLM---DKQGQVLTGLS 234
Query: 297 IKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
+ V ++I DG + GGM+PK+ C + ++ GV +A IIDGRV +++LLEI TD+G GT+I
Sbjct: 235 TEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLI 294
Query: 357 TG 358
+
Sbjct: 295 SN 296
|
| >2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2 Length = 299 | Back alignment and structure |
|---|
Score = 435 bits (1121), Expect = e-154
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 10/290 (3%)
Query: 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPV 132
P + +L+E+LP++++ GK +VVKYGG AM D L + D+ L G+ PV
Sbjct: 5 PTHIKAQVLAEALPWLKQLHGKVVVVKYGGNAMT---DDTLRRAFAADMAFLRNCGIHPV 61
Query: 133 LVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATA 192
+VHGGGP+I L+R GIE F+ G RVT +++ MVL G+V + LV+LIN G A
Sbjct: 62 VVHGGGPQITAMLRRLGIEGDFKGGFRVTTPEVLDVARMVLFGQVGRELVNLINAHGPYA 121
Query: 193 VGLSGMDGRLFTARPSPNSDK-----LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247
VG++G D +LFTA + +G VG+V +V+ + LV +G IPV++++A D
Sbjct: 122 VGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDA 181
Query: 248 FGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307
G +NINADT A +A ALGAEKL++LTD+ G+ D SLV EID + +++
Sbjct: 182 DGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDRDSLVSEIDTGTLAQLLP-- 239
Query: 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357
+ GM+PKV C+R++ GV +A IIDGRV H +L+E+ TDAG GT +
Sbjct: 240 TLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVV 289
|
| >3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans} Length = 279 | Back alignment and structure |
|---|
Score = 402 bits (1035), Expect = e-142
Identities = 79/267 (29%), Positives = 133/267 (49%), Gaps = 10/267 (3%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHG 136
+ ++ + IV+K GG A L + + G + V+VHG
Sbjct: 20 HMASMTGGQQMGRGSMKDIIVIKIGGVAS-----QQLSGDFLSQIKNWQDAGKQLVIVHG 74
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GG IN ++ + +GLRVT + M +VS L+ V K+L + +AG + L
Sbjct: 75 GGFAINKLMEENQVPVKKINGLRVTSKDDMVLVSHALLDLVGKNLQEKLRQAGVSCQQLK 134
Query: 197 GMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
+ A + D G+VG+V ++ VIE + + IP++AS+ + G NINA
Sbjct: 135 SDIKHVVAADY-LDKDTYGYVGDVTHINKRVIEEFLENRQIPILASLGYSKEGDMLNINA 193
Query: 257 DTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
D +A +A AL A+KLIL+T+V G+LEN +++++I V++ I+ + GMIPK
Sbjct: 194 DYLATAVAVALAADKLILMTNVKGVLENG----AVLEKITSHQVQEKIDTAVITAGMIPK 249
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLL 343
+ +++A GV I D + +L+
Sbjct: 250 IESAAKTVAAGVGQVLIGDNLLTGTLI 276
|
| >3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A* Length = 307 | Back alignment and structure |
|---|
Score = 399 bits (1027), Expect = e-140
Identities = 86/307 (28%), Positives = 141/307 (45%), Gaps = 18/307 (5%)
Query: 57 SRSLTSAATAVTDTQTPAEF--RVDILSESLPFIQKFRG----KTIVVKYGGAAMKPNQK 110
++S T + + E +++ F + V+K GGA +
Sbjct: 6 HHHVSSTNGFSATRSTVIQLLNNISTKREVEQYLKYFTSVSQQQFAVIKVGGAIIS---- 61
Query: 111 DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVS 170
+ L + L L VGL P+++HG GP++N L+ GIEP + DG+R+TD +TM +V
Sbjct: 62 -DNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVR 120
Query: 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEP 230
+ N LV+ + + G A ++ +FTA + DK VG + V IE
Sbjct: 121 KCFLE-QNLKLVTALEQLGVRARPITS---GVFTADY-LDKDKYKLVGNIKSVTKEPIEA 175
Query: 231 LVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMS 290
+ +G +P++ S+A GQ N+NAD AGELA K++ L + GI+
Sbjct: 176 SIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGSTGEKI 235
Query: 291 LVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDA 350
+ +D + +++ V G K+ L R++S+ V L E+ TD+
Sbjct: 236 SMINLD-EEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINV-QDLQKELFTDS 293
Query: 351 GAGTMIT 357
GAGTMI
Sbjct: 294 GAGTMIR 300
|
| >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A* Length = 258 | Back alignment and structure |
|---|
Score = 389 bits (1003), Expect = e-137
Identities = 84/266 (31%), Positives = 130/266 (48%), Gaps = 11/266 (4%)
Query: 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRP-VLVHGGGPEINFWLKRFGIEP 152
+++K GG + + L + LV RP V+VHGGG ++ +K +
Sbjct: 3 NPLIIKLGGVLLD---SEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPV 59
Query: 153 VFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSD 212
++GLRVT A+ ++I++ L G NK+L++ K AVGL DG +
Sbjct: 60 KKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQL--DE 117
Query: 213 KLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKL 272
+LG VG P +I L+ +G++PV++S+ + GQ N+NAD A LAA LGA+ L
Sbjct: 118 ELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGAD-L 176
Query: 273 ILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTAS 332
ILL+DV+GIL + + E+ +++IE G + GMI KVN + + R
Sbjct: 177 ILLSDVSGIL---DGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVD 233
Query: 333 IIDGRVEHSLLLEILTDAGAGTMITG 358
I R L + GT I
Sbjct: 234 IASWRHAEQ-LPALFNGMPMGTRILA 258
|
| >4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A* Length = 464 | Back alignment and structure |
|---|
Score = 390 bits (1004), Expect = e-134
Identities = 87/315 (27%), Positives = 144/315 (45%), Gaps = 20/315 (6%)
Query: 47 SNHRTEITKSSRSLTSAATAVTDTQTPAEFRVDILSESLPFIQKFRG----KTIVVKYGG 102
+H S+ ++ + V + E +++ F + V+K GG
Sbjct: 2 GHHHHHHVSSTNGFSATRSTVIQLLN----NISTKREVEQYLKYFTSVSQQQFAVIKVGG 57
Query: 103 AAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTD 162
A + + L + L L VGL P+++HG GP++N L+ GIEP + DG+R+TD
Sbjct: 58 AII-----SDNLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITD 112
Query: 163 ANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVAR 222
+TM +V + N LV+ + + G A ++ +FTA + DK VG +
Sbjct: 113 EHTMAVVRKCFLE-QNLKLVTALEQLGVRARPITS---GVFTADY-LDKDKYKLVGNIKS 167
Query: 223 VDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGIL 282
V IE + +G +P++ S+A GQ N+NAD AGELA K++ L + GI+
Sbjct: 168 VTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGII 227
Query: 283 ENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSL 342
+ +D + +++ V G K+ L R++S+ V L
Sbjct: 228 NGSTGEKISMINLD-EEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINV-QDL 285
Query: 343 LLEILTDAGAGTMIT 357
E+ TD+GAGTMI
Sbjct: 286 QKELFTDSGAGTMIR 300
|
| >3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* Length = 456 | Back alignment and structure |
|---|
Score = 385 bits (992), Expect = e-132
Identities = 71/301 (23%), Positives = 129/301 (42%), Gaps = 14/301 (4%)
Query: 61 TSAATAVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKD 120
+ + P F V E+ P+I++ RG T+V G ++ L + D
Sbjct: 12 SGLVPRGSHMNAPDSF-VAHFREAAPYIRQMRGTTLVAGIDGRLLE----GGTLNKLAAD 66
Query: 121 LVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKS 180
+ LLS +G+R VL+HG ++ G P + GLRVTD ++ ++
Sbjct: 67 IGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTVRSRF 126
Query: 181 LVSLINKAGAT--AVGLSGMDGRLFTARPSPNSDK--LGFVGEVARVDPTVIEPLVNSGH 236
+L A + + G TARP D + + G + + D + +++G+
Sbjct: 127 EAALCGSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGN 186
Query: 237 IPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEID 296
I + + G+++N++ A +A +L AEKL+ LT GI +L + +
Sbjct: 187 IVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGIS---RPDGTLAETLS 243
Query: 297 IKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
+ + + E + ++ + +L GV I++G + SLL E+ T G GT I
Sbjct: 244 AQEAQSLAEHAASETRRL--ISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSI 301
Query: 357 T 357
Sbjct: 302 A 302
|
| >3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A* Length = 460 | Back alignment and structure |
|---|
Score = 384 bits (989), Expect = e-132
Identities = 87/313 (27%), Positives = 134/313 (42%), Gaps = 17/313 (5%)
Query: 49 HRTEITKSSRSLTSAATAVTDTQTPAEFRVDILSESLPFIQKFRG----KTIVVKYGGAA 104
H + + + A V T + E ++ +F G + V+K GGA
Sbjct: 10 HSSGLVPRGSHMNPNAPGVRQTIVQLLSHMRDGKEIREYLHRFSGIDQERFAVIKVGGAV 69
Query: 105 MKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDAN 164
++ + L + L L VGL PV+VHGGGP+++ L+ I DGLRVT
Sbjct: 70 IQ-----DDLPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAADIPTERVDGLRVTRDE 124
Query: 165 TMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVD 224
M I+ L N +LV I AG A + +F A ++DKLG VGE +
Sbjct: 125 AMPIIRDTLTQ-ANLALVDAIRDAGGRAAAVPR---GVFEADI-VDADKLGRVGEPRHIH 179
Query: 225 PTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILEN 284
++ +G ++A + G NINAD L AL K++ LT G+L+
Sbjct: 180 LDLVGSAARAGQAAILACLGETPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDE 239
Query: 285 REDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLL 344
D +S + +++ V GGM K+ R L + +S + L
Sbjct: 240 DGDILSSINLAT--DFGDLMQADWVNGGMRLKLEEIKR-LLDDLPLSSSVSITRPSELAR 296
Query: 345 EILTDAGAGTMIT 357
E+ T AG+GT+I
Sbjct: 297 ELFTHAGSGTLIR 309
|
| >3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV} Length = 467 | Back alignment and structure |
|---|
Score = 383 bits (986), Expect = e-131
Identities = 89/326 (27%), Positives = 139/326 (42%), Gaps = 19/326 (5%)
Query: 37 IKTPHVENFASNHRTEITKSSRSLTSAATAVTDTQTPAEFRVDILSESLPFIQKFR---- 92
+ + H + S+ T + E ++++F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSLPAQPHKQTRQTIVRLLSSMASAKEISQYLKRFSQLDA 60
Query: 93 GKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEP 152
+ VVK GGA + + L ++ L L VGL P+++HG GP+++ L GIE
Sbjct: 61 KRFAVVKVGGAVL-----RDDLEALTSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEK 115
Query: 153 VFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSD 212
+GLRVT + + IV V N LV + + GA A ++G +F A N D
Sbjct: 116 QTVNGLRVTSPHALAIVRKVFQA-SNLKLVEALQQNGARATSITG---GVFEAEY-LNRD 170
Query: 213 KLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKL 272
G VGEV V+ IE + +G IPVI S+ GQ N+NAD A EL L K+
Sbjct: 171 TYGLVGEVKAVNLAPIEASLQAGSIPVITSLGETPSGQILNVNADFAANELVQELQPYKI 230
Query: 273 ILLTDVAGILENREDPMSLVKEIDIKG-VKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTA 331
I LT G+L + L+ I++ +++ + GGM K+ L +
Sbjct: 231 IFLTGTGGLL---DAEGKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRLPL-E 286
Query: 332 SIIDGRVEHSLLLEILTDAGAGTMIT 357
S + L E+ T G+GT++
Sbjct: 287 SSVSITRPADLAKELFTHKGSGTLVR 312
|
| >3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Length = 266 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 1e-58
Identities = 46/280 (16%), Positives = 102/280 (36%), Gaps = 37/280 (13%)
Query: 94 KTIVVKYGGAAM-KPNQKDNLLASVVKDLV----------LLSVVGLRPVLVHGGGPEIN 142
++K GG+ + N ++ ++ + ++ +LVHGGG +
Sbjct: 7 MLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGH 66
Query: 143 FWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRL 202
K+ ++ + + + + R N ++ + AV +
Sbjct: 67 PVAKK-YLKIEDGKKIFINMEKGFWEIQRAM-RRFNNIIIDTLQSYDIPAVSIQPSS--- 121
Query: 203 FTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNINADTVAG 261
G+ D + I+ ++ +PVI + D+ I+ D +
Sbjct: 122 -----------FVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVP 170
Query: 262 ELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGK---VGGGMIPKVN 318
LA L A+ ++ TDV G+L + P+ + + +I + + V GGM K+
Sbjct: 171 YLANELKADLILYATDVDGVLIDN-KPIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIE 229
Query: 319 CCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
++ +G + +G +++ +L + GT I
Sbjct: 230 MIRKNKCRGF----VFNGNKANNIYKALLGE-VEGTEIDF 264
|
| >2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* Length = 310 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 1e-55
Identities = 61/311 (19%), Positives = 109/311 (35%), Gaps = 49/311 (15%)
Query: 93 GKTIVVKYGGAAM-----KPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEI-NFWLK 146
GK +VV GG A+ + + L LV L G R ++ HG GP++ N L+
Sbjct: 2 GKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQ 61
Query: 147 RFGIEPVFRDGLRVTD--ANTMEIVSMVLVGRVNKSLVSL-INKAGAT------------ 191
+ + + + A T + L +N+ L I K AT
Sbjct: 62 QQAADSEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADE 121
Query: 192 -------AVGLSGMDGRLFTARPSPNSDK----------LGFVGEVARVDPTVIEPLVNS 234
+G + A + K + + + I L+ +
Sbjct: 122 AFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGWRKVVPSPKPIDIHEAETINTLIKN 181
Query: 235 GHI------PVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDP 288
I I V + G I+ D + +LA + A+ L++LT V + N P
Sbjct: 182 DIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCINYGKP 241
Query: 289 -MSLVKEIDIKGVKKMIEDGKVG-GGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEI 346
+ + + +++ + G G M+PK+ I+ + +II L +
Sbjct: 242 DEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSM 298
Query: 347 LTDAGAGTMIT 357
D GT++T
Sbjct: 299 SGDEIVGTVVT 309
|
| >2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix} Length = 316 | Back alignment and structure |
|---|
Score = 163 bits (413), Expect = 9e-48
Identities = 55/318 (17%), Positives = 99/318 (31%), Gaps = 58/318 (18%)
Query: 92 RGKTIVVKYGGAAMK--------PNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINF 143
G+ V+ GG A+ +Q + + + G R V+ HG GP++ +
Sbjct: 3 SGRLAVIALGGNAIAGPGMDVSVESQTAAV-KRASSIIADVLADGWRSVITHGNGPQVGY 61
Query: 144 WLKRFGIEPVFRDGL---------------------------RVTDANTMEIVSMVLVGR 176
+ F P R R + ++S VLV
Sbjct: 62 LSEAFEALPPERPRQPLYIATAMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDV 121
Query: 177 VNKSL---------------VSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVA 221
+ S +++ G +
Sbjct: 122 SDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIAE 181
Query: 222 RVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGI 281
+ + G +PV+ ++ D + LA L A+ L++LTDV G+
Sbjct: 182 ASAESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGV 241
Query: 282 LENREDP-MSLVKEIDIKGVKKMIEDGKVG-GGMIPKVNCCIRSLAQGVRTASIIDGRVE 339
N ++ +KK + +G G M PKV I + + + A I G +E
Sbjct: 242 AVNYGREGERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVI--GSLE 299
Query: 340 HSLLLEILTDAGAGTMIT 357
++L AGT++
Sbjct: 300 E--ARQVL-SLQAGTVVM 314
|
| >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* Length = 286 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 2e-40
Identities = 50/295 (16%), Positives = 99/295 (33%), Gaps = 44/295 (14%)
Query: 82 SESLPFIQKFRGKTIVVKYGGAAM-KPNQKDNLLASVVKDLV-----LLSVVGLRPVLVH 135
S +P + +K GG+ + ++ +L V L R VL+
Sbjct: 12 SGLVPRGSHMTPDFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLIS 71
Query: 136 GGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGL 195
GGG + ++ T A ++ ++ V K + G A L
Sbjct: 72 GGGAFGHGAIRDHDS----------THAFSLAGLTEATF-EVKKRWAEKLRGIGVDAFPL 120
Query: 196 SGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNI 254
+ + ++ V+ +++ G +PV+A DE G+ +
Sbjct: 121 QL-------------AAMCTLRNGIPQLRSEVLRDVLDHGALPVLAGDALFDEHGKLWAF 167
Query: 255 NADTVAGELAAALGAE-KLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGK----- 308
++D V L + +++ LTDV GI+ + +++ E+D + ++
Sbjct: 168 SSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAGGDTILPEVDARSPEQAYAALWGSSEW 227
Query: 309 -VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLL-----LEILTDAGAGTMIT 357
G M K++ + +G I+ G L T IT
Sbjct: 228 DATGAMHTKLDALVTCARRGAECF-IMRGDPGSDLEFLTAPFSSWPAHVRSTRIT 281
|
| >3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803} Length = 317 | Back alignment and structure |
|---|
Score = 140 bits (353), Expect = 4e-39
Identities = 54/317 (17%), Positives = 102/317 (32%), Gaps = 58/317 (18%)
Query: 93 GKTIVVKYGGAAM--------KPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW 144
GKT+V+ GG AM Q+ N+ ++ + G + VL G GP++
Sbjct: 5 GKTVVIALGGNAMLQAKEKGDYDTQRKNV-EIAASEIYKIHKAGYKVVLTSGNGPQVGAI 63
Query: 145 LKRFGI----EPVFRDGLRVTDANTM--------------------EIVSMVLVGRVNKS 180
+ P + + V+ V V+
Sbjct: 64 KLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPK 123
Query: 181 LVSLINKAGATAVGLSGMDGRLFTARPSPNSDK----------LGFVGEVARVDPTVIEP 230
+ N + + + A + + + V+ VI+
Sbjct: 124 DQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKT 183
Query: 231 LVNSGHIPVIASVAADE--------FGQSYNINADTVAGELAAALGAEKLILLTDVAGIL 282
L+++ + + + G I+ D LA L ++ L++LTDV
Sbjct: 184 LIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNAC 243
Query: 283 ENREDP-MSLVKEIDIKGVKKMIEDGKVG-GGMIPKVNCCIRSLAQGVRTASIIDGRVEH 340
N + P ++EI + + + +DG G M PKV I + + I +
Sbjct: 244 INYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSII--TSLST 301
Query: 341 SLLLEILTDAGAGTMIT 357
++ L + GT I
Sbjct: 302 --AVDAL-NGKCGTRII 315
|
| >1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 Length = 314 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 7e-34
Identities = 58/317 (18%), Positives = 105/317 (33%), Gaps = 59/317 (18%)
Query: 93 GKTIVVKYGGAAMK--------PNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW 144
GK +V+ GG A++ DN+ + + + G V+ HG GP++
Sbjct: 2 GKRVVIALGGNALQQRGQKGSYEEMMDNV-RKTARQIAEIIARGYEVVITHGNGPQVGSL 60
Query: 145 LKRFGIEPVFRDG----LRVTDANTMEIVSMVLVGRVNKSLVSL-INKAGATAVGLSGMD 199
L + V A + + ++ + L + K T + + +D
Sbjct: 61 LLHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVD 120
Query: 200 -------------GRLFTARPSPN-----------------SDKLGFVGEVARVDPTVIE 229
G + + + V+ I+
Sbjct: 121 KNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIK 180
Query: 230 PLVNSGHIPVIASV--------AADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGI 281
LV G I + + + G I+ D +LA + A+ ++LTDV G
Sbjct: 181 KLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGA 240
Query: 282 LENREDP-MSLVKEIDIKGVKKMIEDGKV-GGGMIPKVNCCIRSLAQGVRTASIIDGRVE 339
++E+ ++ ++K E+G G M PKV IR + G A I +E
Sbjct: 241 ALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAII--AHLE 298
Query: 340 HSLLLEILTDAGAGTMI 356
+E L GT +
Sbjct: 299 K--AVEALEG-KTGTQV 312
|
| >3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 269 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 5e-14
Identities = 50/283 (17%), Positives = 111/283 (39%), Gaps = 36/283 (12%)
Query: 94 KTIVVKYGGAAM-KPNQKDNL--LASVVKDLVLLSVVGLRPVLV-HGGGPEINFWLKRFG 149
I++K GG+ + + + ++ ++ + + +++ HG G + + +
Sbjct: 3 HMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNASPSSLMIVHGAGSFGHPFAGEYR 62
Query: 150 IEPVFRDGLRVTDANTMEIVSMV---LVGRVNKSLVSLINKAGATAVGLSGMDGRLFTAR 206
I D + V ++N + + G AV +
Sbjct: 63 IGSEIE---NEEDLRRRRFGFALTQNWVKKLNSHVCDALLAEGIPAVSMQ---------- 109
Query: 207 PSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVI---ASVAADEFGQSYNINADTVAGEL 263
P++ G ++ D ++I + G +PV+ + +D + I+ D +
Sbjct: 110 --PSAFIRAHAGRISHADISLIRSYLEEGMVPVVYGDVVLDSDRRLKFSVISGDQLINHF 167
Query: 264 AAALGAEKLILLTDVAGILEN--REDP----MSLVKEIDIKGVKKMIEDGK--VGGGMIP 315
+ L E++IL TDV G+ ++ P + ++ +D ++ + V GGM+
Sbjct: 168 SLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDD--LESLDGTLNTDVTGGMVG 225
Query: 316 KVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358
K+ + +GV + II+ V ++ +L + GT ITG
Sbjct: 226 KIRELLLLAEKGVESE-IINAAVPGNIERALLGEEVRGTRITG 267
|
| >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 4e-13
Identities = 45/274 (16%), Positives = 96/274 (35%), Gaps = 40/274 (14%)
Query: 94 KTIVVKYGGAAM-KPNQKDNLLASVVKDLVLLSVVGLRPVLV-HGGGPEINFWLKRFGIE 151
+++K GG+ + + ++ +V + V V HGGG + FG+
Sbjct: 4 TMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSGIEDLVCVVHGGGSFGHIKAMEFGLP 63
Query: 152 PVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNS 211
+ + + ++ ++ + + G + + +A
Sbjct: 64 GPKNPRSSIGYSIVHRDME-----NLDLMVIDAMIEMGMRPISV------PISAL----- 107
Query: 212 DKLGFVGEVARVDPTVIEPLVNSGHIPVIA--SVAADE--FGQSYNINADTVAGELAAAL 267
R D T + +++G +PV DE +G D + ++A L
Sbjct: 108 ------RYDGRFDYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSG---DDIMADMAELL 158
Query: 268 GAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVG----GGMIPKVNCCIR- 322
+ + LTDV GI DP + ++ + I +V GG+ K ++
Sbjct: 159 KPDVAVFLTDVDGIYSK--DPKRNPDAVLLRDIDTNITFDRVQNDVTGGIGKKFESMVKM 216
Query: 323 SLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356
+ +I+G + +I ++ GT+I
Sbjct: 217 KSSVKNGVY-LINGNHPER-IGDIGKESFIGTVI 248
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-07
Identities = 45/381 (11%), Positives = 96/381 (25%), Gaps = 117/381 (30%)
Query: 41 HVENFASNHRTEITKSSRS-LTSAATAVTDTQTPAEFRVDILSESLPFIQKFRGKTIVVK 99
E + T + R L + L ++L + R V+
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL---LELRPAKNVLI 155
Query: 100 YGGAAMKPNQKDNLLASVVKDLVLLSV---------VG------------------LRPV 132
G + + K + V + + + P
Sbjct: 156 DG---VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 133 LV----HGGGPEINF-----WLKRFGIEPVFRDGLRVTD-------ANTMEIVSMVLVGR 176
H ++ L+R + + L V N + +L+
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 177 VNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGH 236
K + ++ A T + L T + + P + V + +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSM-TLTPDEV-----KSLLLKYLDCRPQDLPREVLTTN 326
Query: 237 IP-VIASVAA---DEFG--QSY-NINADTVAGELAAALGA----------EKL-ILLTDV 278
P ++ +A D ++ ++N D + + ++L ++L +
Sbjct: 327 -PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 279 ---AGILE------NREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQG-- 327
+L + D M +V + SL +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNK------------------------LHKYSLVEKQP 421
Query: 328 -VRTASIIDGRVEHSLLLEIL 347
T SI S+ LE+
Sbjct: 422 KESTISI------PSIYLELK 436
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 4e-06
Identities = 46/315 (14%), Positives = 81/315 (25%), Gaps = 84/315 (26%)
Query: 41 HVENFASNHRTEITKSSRSLTSAATAVTDTQ----------TPAE----FR--VDILSES 84
F + + +T + +T +A T T TP E +D +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 85 LPFIQKFRGKTIVVKYGGAAMK--PNQKDNL-------LASVVKDLVLLSVVGLRPVLVH 135
LP + + +++ DN L ++++ S+ L P
Sbjct: 318 LP-REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE----SSLNVLEP---- 368
Query: 136 GGGPEINFWLKRFGIEPVFRDGLRVTDANTMEI---------VSMVLVGRVNKSLVSLIN 186
E R + F + + + V +V+ SLV
Sbjct: 369 ---AEYRKMFDRLSV---FPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 187 KAGATAVGLSGMDGRLFTARPSPNSDKL--GFVGE---VARVDPTVIEPLVNSG------ 235
K ++ L N L V D + P
Sbjct: 422 KESTISI----PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 236 --HIPVI-ASVAADEFGQSY--------NINADTVAGELAAALGAEKLILLTDVAG---- 280
H+ I F + I D+ A + ++ L L +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI----LNTLQQLKFYKPY 533
Query: 281 ILENREDPMSLVKEI 295
I +N LV I
Sbjct: 534 ICDNDPKYERLVNAI 548
|
| >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A Length = 367 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 22/141 (15%)
Query: 228 IEPLVNSGHIPVIA---SVAADE--FGQSYNINADTVAGELAAALGAEKLILLTDVAGIL 282
+ L+++ +PVI +VA E G N D ++ A GA+KL+LLTD G+
Sbjct: 121 LRALLDNNVVPVINENDAVATAEIKVGD----N-DNLSALAAILAGADKLLLLTDQKGLY 175
Query: 283 EN--REDP----MSLVKEIDIKGVKKMIEDG--KVG-GGMIPKVNCCIRSLAQGVRTASI 333
R +P + V ID ++ + D +G GGM K+ + G+ T I
Sbjct: 176 TADPRSNPQAELIKDVYGID-DALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTI-I 233
Query: 334 IDGRVEHSLLLEILTDAGAGT 354
G + +++ GT
Sbjct: 234 AAGSKPGV-IGDVMEGISVGT 253
|
| >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 6e-06
Identities = 41/270 (15%), Positives = 74/270 (27%), Gaps = 42/270 (15%)
Query: 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153
V+K GG ++ + + +V ++V + ++ G G R
Sbjct: 37 DATVIKIGGQSVIDRGRAAVY-PLVDEIVAARK-NHKLLIGTGAG---TRA--RHLYSIA 89
Query: 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLIN-KAGATAVGLSGMDGRLFTARPSPNSD 212
GL + V+ N + G+ +
Sbjct: 90 AGLGLPAGVLAQLGS------------SVADQNAAMLGQLLAKHGIPVVGGAGLSAVPLS 137
Query: 213 KLGFVGEVARVDP--TVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAE 270
V P + G IP D LA G +
Sbjct: 138 LAEVNAVVFSGMPPYKLWMRPAAEGVIP----------PYR----TDAGCFLLAEQFGCK 183
Query: 271 KLILLTDVAGILENREDPMSL--VKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGV 328
++I + D G+ +P + I V +M G + V ++S
Sbjct: 184 QMIFVKDEDGLYT--ANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVR 241
Query: 329 RTASIIDGRVEHSLLLEILTDAGAGTMITG 358
+++G V + L L GT+IT
Sbjct: 242 EVQ-VVNGLVPGN-LTRALAGEHVGTIITA 269
|
| >2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 Length = 251 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 4e-05
Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 24/143 (16%)
Query: 228 IEPLVNSGHIPVIA---SVAADE--FGQSYNINADTVAGELAAALGAEKLILLTDVAGIL 282
I+ ++N G +P+I + A +E FG N D+++ A+ L++L+D+ G
Sbjct: 114 IDMMINLGILPIINENDATAIEEIVFGD----N-DSLSAYATHFFDADLLVILSDIDGFY 168
Query: 283 EN--REDP----MSLVKEIDIKGVKKMIED--GKVG-GGMIPKVNCCIRSLAQGVRTASI 333
+ E + + I + + + G GG++ K+ L + +
Sbjct: 169 DKNPSEFSDAKRLEKITHIK-EEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMF-L 226
Query: 334 IDGRVEHSLLLEILTDAGA--GT 354
G L + GT
Sbjct: 227 ASGFDLSV-AKTFLLEDKQIGGT 248
|
| >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 51/271 (18%), Positives = 79/271 (29%), Gaps = 47/271 (17%)
Query: 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153
VVK GG M + +V++L L R +++ G G R
Sbjct: 40 WLQVVKIGGRVMDRGAD--AILPLVEELRKLLP-EHRLLILTGAG---VRA--RHVFSVG 91
Query: 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDK 213
GL V + G + L +++ G + V A
Sbjct: 92 LDLGLPVGSLAPLAASEAGQNGHI---LAAMLASEGVSYVEHP------TVADQLAIHLS 142
Query: 214 LGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLI 273
V P IP ADT A LA A GA L
Sbjct: 143 ATRA-VVGSAFPPYHHHEFPGSRIP----------PHR----ADTGAFLLADAFGAAGLT 187
Query: 274 LLTDVAGILENREDPMS-------LVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQ 326
++ +V GI DP + E + K V ++ + + A+
Sbjct: 188 IVENVDGIYT--ADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVM-----ATAR 240
Query: 327 GVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357
+ +++G V L L GT+I
Sbjct: 241 HIERVQVVNGLVPGR-LTAALRGEHVGTLIR 270
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| 2rd5_A | 298 | Acetylglutamate kinase-like protein; protein-prote | 100.0 | |
| 2ap9_A | 299 | NAG kinase, acetylglutamate kinase, AGK; structura | 100.0 | |
| 2v5h_A | 321 | Acetylglutamate kinase; amino-acid biosynthesis, t | 100.0 | |
| 2buf_A | 300 | Acetylglutamate kinase; acetyglutamate kinase, ADP | 100.0 | |
| 2bty_A | 282 | Acetylglutamate kinase; N-acetyl-L-glutamate kinas | 100.0 | |
| 3zzh_A | 307 | Acetylglutamate kinase; transferase, arginine bios | 100.0 | |
| 3d2m_A | 456 | Putative acetylglutamate synthase; protein-COA-Glu | 100.0 | |
| 3s6g_A | 460 | N-acetylglutamate kinase / N-acetylglutamate SYNT; | 100.0 | |
| 4ab7_A | 464 | Protein Arg5,6, mitochondrial; transferase, argini | 100.0 | |
| 3l86_A | 279 | Acetylglutamate kinase; ARGB, amino-acid biosynthe | 100.0 | |
| 3s6k_A | 467 | Acetylglutamate kinase; synthase, transferase; 2.8 | 100.0 | |
| 2egx_A | 269 | Putative acetylglutamate kinase; struc genomics, N | 100.0 | |
| 1gs5_A | 258 | Acetylglutamate kinase; carbamate kinase, amino ac | 100.0 | |
| 3ll9_A | 269 | Isopentenyl phosphate kinase; mevalonate biosynthe | 100.0 | |
| 3k4o_A | 266 | Isopentenyl phosphate kinase; small molecule kinas | 100.0 | |
| 2e9y_A | 316 | Carbamate kinase; transferase, structural genomics | 100.0 | |
| 3ll5_A | 249 | Gamma-glutamyl kinase related protein; alternate m | 100.0 | |
| 3d40_A | 286 | FOMA protein; fosfomycin, antibiotic resistance, k | 100.0 | |
| 2we5_A | 310 | Carbamate kinase 1; arginine catabolism, arginine | 100.0 | |
| 1e19_A | 314 | Carbamate kinase-like carbamoylphosphate synthetas | 100.0 | |
| 2ogx_A | 276 | Molybdenum storage protein subunit alpha; open alp | 100.0 | |
| 2ako_A | 251 | Glutamate 5-kinase; structural genomics, PSI, prot | 100.0 | |
| 2j5v_A | 367 | Glutamate 5-kinase; proline biosynthesis, gamma gl | 100.0 | |
| 2j4j_A | 226 | Uridylate kinase; transferase, nucleoside monophos | 100.0 | |
| 4a7w_A | 240 | Uridylate kinase; transferase; HET: GTP; 1.80A {He | 100.0 | |
| 4axs_A | 332 | Carbamate kinase; oxidoreductase; 2.50A {Mycoplasm | 100.0 | |
| 2ogx_B | 270 | Molybdenum storage protein subunit beta; open alph | 100.0 | |
| 2ij9_A | 219 | Uridylate kinase; structural genomics, protein str | 100.0 | |
| 2brx_A | 244 | Uridylate kinase; UMP kinase, amino acid kinase, p | 100.0 | |
| 3ek6_A | 243 | Uridylate kinase; UMPK unique GTP B site, alloster | 100.0 | |
| 1z9d_A | 252 | Uridylate kinase, UK, UMP kinase; structural genom | 100.0 | |
| 1ybd_A | 239 | Uridylate kinase; alpha/beta/alpha fold, hexamer, | 100.0 | |
| 2va1_A | 256 | Uridylate kinase; UMPK, transferase, pyrimidine bi | 100.0 | |
| 2a1f_A | 247 | Uridylate kinase; PYRH, structural genomics, PSI, | 100.0 | |
| 3kzf_A | 317 | Carbamate kinase; arginine dihydrolase pathway, gi | 100.0 | |
| 2jjx_A | 255 | Uridylate kinase, UMP kinase; structural genomics, | 100.0 | |
| 3nwy_A | 281 | Uridylate kinase; allosterically activated form, A | 100.0 | |
| 3ab4_A | 421 | Aspartokinase; aspartate kinase, concerted inhibit | 100.0 | |
| 3l76_A | 600 | Aspartokinase; allostery, ACT domains, kinase tran | 99.96 | |
| 3c1m_A | 473 | Probable aspartokinase; allosteric inhibition, thr | 99.95 | |
| 2cdq_A | 510 | Aspartokinase; aspartate kinase, amino acid metabo | 99.92 | |
| 2j0w_A | 449 | Lysine-sensitive aspartokinase 3; feedback inhibit | 99.91 | |
| 3tvi_A | 446 | Aspartokinase; structural genomics, ACT domains, r | 99.83 |
| >2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-60 Score=457.47 Aligned_cols=288 Identities=80% Similarity=1.180 Sum_probs=266.3
Q ss_pred cCCCCChhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHH
Q 018330 68 TDTQTPAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKR 147 (358)
Q Consensus 68 ~~~~~~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~ 147 (358)
.+...++.++++||+||+|||++|+++++||||||+++++ ++....++++|+.|++.|+++|||||||++++.++++
T Consensus 11 ~~~~~~~~~~~~~~~~a~pyi~~~~~k~iVIKlGGs~l~~---~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~ 87 (298)
T 2rd5_A 11 TGNAPSPDYRVEILSESLPFIQKFRGKTIVVKYGGAAMTS---PELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQ 87 (298)
T ss_dssp -------CHHHHHHHHTHHHHHHTTTCEEEEEECTHHHHC---HHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHHHHhcCCEEEEEECchhhCC---hhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHH
Confidence 3334466899999999999999999999999999999999 7666889999999999999999999999999999999
Q ss_pred cCCCccccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHH
Q 018330 148 FGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTV 227 (358)
Q Consensus 148 ~gi~~~~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~ 227 (358)
++++++|.+|+|+|+++.++.+.++++|++|..++..|+++|++++++++.+++++++++.+..+|++++|+++.++.+.
T Consensus 88 ~~~~~~~~~g~R~t~~~~l~~~~~~~~G~~n~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~~~ 167 (298)
T 2rd5_A 88 LNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSV 167 (298)
T ss_dssp TTCCCCEETTEECBCHHHHHHHHHHHHHTHHHHHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECGGG
T ss_pred cCCCccccCCcccCCHHHHHHHHHHHhchHHHHHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECHHH
Confidence 99999999999999999999999988899999999999999999999999999999998765334788999999999999
Q ss_pred HHHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCC
Q 018330 228 IEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307 (358)
Q Consensus 228 I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~ 307 (358)
|+.+|++|.|||+++++.++.|+.+++|+|++|+++|.+|+||+|+|+|||||||+++|+|.++|++|+++|+++++..+
T Consensus 168 i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~~a~~i~~is~~e~~~~~~~g 247 (298)
T 2rd5_A 168 LRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDG 247 (298)
T ss_dssp HHHHHHTTCEEEEESEEECTTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSCTTSEECEEEHHHHHHHHHTT
T ss_pred HHHHHhCCCEEEEcCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCCCCCCcccCCHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999877678899999999999999888
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 308 ~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+++|||.+|+++|..+++.|+++++|+||+.|++|+.++|+++++||+|.+
T Consensus 248 ~~~gGM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 248 KVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp SSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred CCCCchHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 999999999999999999999999999999999988899999999999975
|
| >2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-59 Score=449.33 Aligned_cols=281 Identities=44% Similarity=0.777 Sum_probs=265.5
Q ss_pred ChhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCc
Q 018330 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEP 152 (358)
Q Consensus 73 ~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~ 152 (358)
++.++++||+||+|||++|+++++||||||+++++ +.....++++|+.|++.|+++|||||||++++.+++++++++
T Consensus 5 ~~~~~~~~~~~a~pyi~~~~~k~iViKlGGs~l~~---~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~ 81 (299)
T 2ap9_A 5 PTHIKAQVLAEALPWLKQLHGKVVVVKYGGNAMTD---DTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEG 81 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCEEEEEECTHHHHS---HHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCC
T ss_pred ChhhHHHHHHHHHHHHHHhCCCeEEEEECchhhCC---chHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCcc
Confidence 56899999999999999999999999999999999 766688999999999999999999999999999999999999
Q ss_pred cccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCC-----CCCCCCcccceeecCHHH
Q 018330 153 VFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSP-----NSDKLGFVGEVARVDPTV 227 (358)
Q Consensus 153 ~~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~-----~~~d~g~~g~v~~i~~~~ 227 (358)
+|.+|+|+|+.++++++.++++|++|..|+++|+++|++++++++.|++++++++.. +..|+|++|+|..++.+.
T Consensus 82 ~~~~g~R~t~~~~l~~~~~~~~G~l~~~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~ 161 (299)
T 2ap9_A 82 DFKGGFRVTTPEVLDVARMVLFGQVGRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAA 161 (299)
T ss_dssp CCSSSSCCBCHHHHHHHHHHHHHTHHHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHH
T ss_pred cccCCcccCCHHHHHHHHHHHhhHHHHHHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHH
Confidence 999999999999999999999999999999999999999999999999999988753 246899999999999999
Q ss_pred HHHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCC
Q 018330 228 IEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307 (358)
Q Consensus 228 I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~ 307 (358)
|+.+|++|.|||++|++.+++|+.+++|+|++|+.+|.+|+||+|+|+|||||||+++|+++++|++|+++|+++++.
T Consensus 162 i~~lL~~g~IpVv~~v~~~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~~~~~i~~is~~e~~~l~~-- 239 (299)
T 2ap9_A 162 MLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDRDSLVSEIDTGTLAQLLP-- 239 (299)
T ss_dssp HHHHHHTTCEEEEESEEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTCTTCEESEEEHHHHHHHGG--
T ss_pred HHHHHhCCCeEEECCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCCCCcChhhcCHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999998766678999999999999976
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 308 ~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.++|||.||+++|..+++.|+++++|+||+.|++|+.++|+++++||+|.+
T Consensus 240 ~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~ 290 (299)
T 2ap9_A 240 TLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVR 290 (299)
T ss_dssp GSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEEC
T ss_pred hhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEec
Confidence 789999999999999999999999999999999988999999999999964
|
| >2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-59 Score=449.58 Aligned_cols=281 Identities=66% Similarity=1.061 Sum_probs=265.8
Q ss_pred hhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcc
Q 018330 74 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153 (358)
Q Consensus 74 ~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~ 153 (358)
..++++||+||+|||++|+++++|||+||+++++ ++....++++|+.|++.|+++|||||||++++..++++|++++
T Consensus 30 ~~~~~~~~~~a~pyi~~~~~k~iVIKlGGs~l~~---~~~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~ 106 (321)
T 2v5h_A 30 AADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQ---EELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQ 106 (321)
T ss_dssp CCCHHHHHHHTHHHHHHTTTCEEEEEECTHHHHS---HHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCC
T ss_pred hhhHHHHHHHHHHHHHHhCCCeEEEEECchhhCC---chHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCcc
Confidence 3589999999999999999999999999999999 7666889999999999999999999999999999999999999
Q ss_pred ccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh
Q 018330 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN 233 (358)
Q Consensus 154 ~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~ 233 (358)
|.+|+|+|++..++.+.++++|++|..++.+|+++|++++++++.+++++.+++.. .+|++++|++..++.+.|+.+|+
T Consensus 107 ~~~g~Rvt~~~~l~~~~~~~~G~in~~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~-~~d~g~~g~v~~v~~~~i~~lL~ 185 (321)
T 2v5h_A 107 FHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHD-QEGIGFVGEVNSVNSEVIEPLLE 185 (321)
T ss_dssp BSSSSBCBCHHHHHHHHHHHHHTHHHHHHHHHHHHTCCEEEECTTGGGSEEEEECS-SCSSBSBEEEEEECGGGTHHHHH
T ss_pred ccCCcccCCHHHHHHHHHHHhChHHHHHHHHHHhCCCCeeeeChhhccEEEeecCC-CccccccceeEEecHHHHHHHHH
Confidence 99999999999999999988899999999999999999999999999999998765 46899999999999999999999
Q ss_pred CCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCc
Q 018330 234 SGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGM 313 (358)
Q Consensus 234 ~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM 313 (358)
+|.|||+++++.++.|+.+++|+|++|+.+|.+|+||+|+|+|||||||+++|++.++|++|+++|+++++..+.++|||
T Consensus 186 ~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~~a~~i~~is~~e~~~l~~~g~~~gGM 265 (321)
T 2v5h_A 186 RGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGM 265 (321)
T ss_dssp TTCEEEEESEEECTTSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTCTTCBCCEEEHHHHHHHHHTTSSCTTH
T ss_pred CCCeEEEeCceECCCCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCCCCeeeeEEcHHHHHHHHhCCCCcCcH
Confidence 99999999999999999999999999999999999999999999999999866667899999999999999888899999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 314 IPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 314 ~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+|+++|..+++.|+++++|+||+.|++|+.++|++++.||+|.+
T Consensus 266 ~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~ 310 (321)
T 2v5h_A 266 IPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVG 310 (321)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEEC
Confidence 999999999999999999999999999998999999999999963
|
| >2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-57 Score=437.19 Aligned_cols=279 Identities=48% Similarity=0.822 Sum_probs=262.4
Q ss_pred hhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcc
Q 018330 74 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153 (358)
Q Consensus 74 ~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~ 153 (358)
+.++++||+||+|||++|+++++|||+||+++++ +.....++++|+.|++.|+++|||||||++++..+++++++++
T Consensus 7 ~~~~~~~~~~a~pyi~~~~~k~iVIKlGGs~l~~---~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~ 83 (300)
T 2buf_A 7 AAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMES---EELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESH 83 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTS---SHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHhHHHHHhcCCeEEEEECchhhCC---chHHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCcc
Confidence 4589999999999999999999999999999999 6656789999999999999999999999999999999999999
Q ss_pred ccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCC-----------CCCCCcccceee
Q 018330 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPN-----------SDKLGFVGEVAR 222 (358)
Q Consensus 154 ~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~-----------~~d~g~~g~v~~ 222 (358)
|.+|+|+|++++++.+.++++|++|..|+++|+++|++++++++.|++++.+++... ..|++++|+|+.
T Consensus 84 ~~~g~rvt~~~~l~~~~~~~~G~~~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~ 163 (300)
T 2buf_A 84 FIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTG 163 (300)
T ss_dssp BSSSSBCBCHHHHHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEE
T ss_pred ccCCeecCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEE
Confidence 999999999999999999988999999999999999999999999999999886431 127899999999
Q ss_pred cCHHHHHHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHH
Q 018330 223 VDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKK 302 (358)
Q Consensus 223 i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~ 302 (358)
++.+.|+.+|++|.|||+++++.++.|+.+++|+|++|+++|.+|+||+|+|+|||||||++ +.++|++++++|+++
T Consensus 164 v~~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~---~a~~i~~i~~~e~~~ 240 (300)
T 2buf_A 164 VNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDK---QGQVLTGLSTEQVNE 240 (300)
T ss_dssp ECHHHHHHHHHTTCEEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCT---TSCBCCEECHHHHHH
T ss_pred ECHHHHHHHHHCCCEEEEcCceeCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECC---CCcChhhCCHHHHHH
Confidence 99999999999999999999998999999999999999999999999999999999999986 478999999999999
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 303 MIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 303 l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
++..+.++|||.+|+++|..+++.|+++++|+||+.|++|+.++|++++.||+|.+
T Consensus 241 ~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~ 296 (300)
T 2buf_A 241 LIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISN 296 (300)
T ss_dssp HHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEEC
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEe
Confidence 99888899999999999999999999999999999999988999999999999963
|
| >2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=434.14 Aligned_cols=277 Identities=48% Similarity=0.837 Sum_probs=261.2
Q ss_pred hhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccc
Q 018330 75 EFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVF 154 (358)
Q Consensus 75 ~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~ 154 (358)
.++++|||||+|||++|+++++||||||+++++ ++....++++|+.|++.|+++|||||||++++.++++++++++|
T Consensus 3 ~~~~~~~~~~~pyi~~~~~~~iViKlGGs~l~~---~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~~~~~~ 79 (282)
T 2bty_A 3 IDTVNVLLEALPYIKEFYGKTFVIKFGGSAMKQ---ENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVF 79 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEECSHHHHS---HHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCB
T ss_pred hHHHHHHHHHHHHHHHhcCCeEEEEECchhhCC---hhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCCccc
Confidence 468999999999999999999999999999998 76668899999999999999999999999999999999999999
Q ss_pred cCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhC
Q 018330 155 RDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNS 234 (358)
Q Consensus 155 ~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~ 234 (358)
.+|+|+|+++.++.+.++++|++|..++++|+++|++++++++.+++++.+++.....|++++|+++.++.+.|+.+|++
T Consensus 80 ~~g~r~t~~~~l~~~~~~~~G~~~~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~~~i~~ll~~ 159 (282)
T 2bty_A 80 KNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIEN 159 (282)
T ss_dssp SSSSBCBCHHHHHHHHHHHHHTHHHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHT
T ss_pred cCCcccCCHHHHHHHHHHHhhHHHHHHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecHHHHHHHHHC
Confidence 99999999999999999988999999999999999999999999999999887532347899999999999999999999
Q ss_pred CCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcH
Q 018330 235 GHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMI 314 (358)
Q Consensus 235 G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~ 314 (358)
|.|||++|++.++.|+.+++|+|++|+.+|.+|+||+|+|+|||||||++ | ++|++++++|+++++..+.++|||.
T Consensus 160 g~IpVi~~v~~~~~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~---~-~~i~~i~~~e~~~~~~~g~~~gGM~ 235 (282)
T 2bty_A 160 DYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD---G-KLISTLTPDEAEELIRDGTVTGGMI 235 (282)
T ss_dssp TCEEEEESEEECSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET---T-EECCEECHHHHHHHHTTTCSCTTHH
T ss_pred CCEEEECCCccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC---c-hhhhhCCHHHHHHHHHcCCCCCcHH
Confidence 99999999999999999999999999999999999999999999999997 5 9999999999999988888999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 315 PKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 315 ~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+|+++|..+++.|+++++|+||+.|++|+.++|++++.||+|.+
T Consensus 236 ~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~ 279 (282)
T 2bty_A 236 PKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKE 279 (282)
T ss_dssp HHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECC
T ss_pred HHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEe
Confidence 99999999999999989999999999988899999999999964
|
| >3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=415.75 Aligned_cols=262 Identities=32% Similarity=0.504 Sum_probs=237.6
Q ss_pred HHhhhHHHHhhcC----CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccC
Q 018330 81 LSESLPFIQKFRG----KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRD 156 (358)
Q Consensus 81 l~~a~pyi~~~~~----k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~ 156 (358)
+||++||+++|++ +++|||+||+++++ . .++++++|++|+..|.++|||||||++++.+++++|++++|.+
T Consensus 32 ~re~~~yi~~f~~~~~~~~iViK~GGsv~~~---~--~~~~~~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~~~~ 106 (307)
T 3zzh_A 32 KREVEQYLKYFTSVSQQQFAVIKVGGAIISD---N--LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYID 106 (307)
T ss_dssp HHHHHHHHHHHHCCCCSCCEEEEECHHHHHH---S--HHHHHHHHHHHHHBTCCEEEEECCHHHHHHHHHHTTCCCCEET
T ss_pred hhhHHHHHHHHhCCCCCCEEEEEEChHHhhc---h--HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHcCCCccccC
Confidence 4789999999999 99999999998876 2 4789999999999999999999999999999999999999999
Q ss_pred CcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCC
Q 018330 157 GLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGH 236 (358)
Q Consensus 157 g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~ 236 (358)
|+|+|++++|+++.|++ +++|+.++++|+++|++++++++ +++++++.. +.||||+|+|++++.+.|+.+|++|+
T Consensus 107 G~RvTd~~~l~vv~m~~-~~vn~~lv~~L~~~G~~Av~l~g---g~~~a~~~~-~~d~g~~G~i~~v~~~~i~~lL~~g~ 181 (307)
T 3zzh_A 107 GIRITDEHTMAVVRKCF-LEQNLKLVTALEQLGVRARPITS---GVFTADYLD-KDKYKLVGNIKSVTKEPIEASIKAGA 181 (307)
T ss_dssp TEECBCHHHHHHHHHHH-HHHHHHHHHHHHHTTCCEEEECS---SSEEEEESC-HHHHBSBEEEEEECCHHHHHHHHHTC
T ss_pred CeecCCHHHHHHHHHHH-HHHHHHHHHHHHhCCCCeeEEcC---CcEEEEecC-ccccCccccccccCHHHHHHHHHCCC
Confidence 99999999999999995 68999999999999999999986 566888743 56899999999999999999999999
Q ss_pred eEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHH-HHHHHhCCCCCCCcHH
Q 018330 237 IPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKG-VKKMIEDGKVGGGMIP 315 (358)
Q Consensus 237 IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e-~~~l~~~~~vtGGM~~ 315 (358)
|||++|++++.+|+++|+|+|++|+++|.+|+||+|+|+|||||||++ +++++|+++++.| +++++.+++++|||.|
T Consensus 182 IpVi~~~g~~~~G~~~~i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~--~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~ 259 (307)
T 3zzh_A 182 LPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING--STGEKISMINLDEEYDDLMKQSWVKYGTKL 259 (307)
T ss_dssp EEEECCCEECTTCBEEBCCHHHHHHHHHHHHCCSEEEEECSSCSCEET--TTTEECCEEEHHHHHHHHHTSTTSCHHHHH
T ss_pred EEEEeCCeECCCCcEEecCHHHHHHHHHHhCCCCEEEEEeCCcceecC--CCCcCCcccCHHHHHHHHHhCCCCCCcHHH
Confidence 999999998888999999999999999999999999999999999986 2357999999975 7888888889999999
Q ss_pred HHHH---HHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 316 KVNC---CIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 316 Kv~a---A~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
||++ |.++++.|.. ++|++ +++|+.|+|+++++||+|.+
T Consensus 260 Kl~aa~~a~~~v~~g~~-v~I~~---~~~ll~elft~~g~GT~I~~ 301 (307)
T 3zzh_A 260 KIREIKELLDYLPRSSS-VAIIN---VQDLQKELFTDSGAGTMIRR 301 (307)
T ss_dssp HHHHHHHHHHHSCTTCC-EEEEC---GGGHHHHHHSCCCCSEEEEC
T ss_pred HHHHHHHHHHHhccCeE-EEEeC---ccHHHHHHhcCCCCcEEEec
Confidence 9985 4444445755 99998 88988999999999999964
|
| >3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-53 Score=428.28 Aligned_cols=273 Identities=25% Similarity=0.417 Sum_probs=251.5
Q ss_pred hhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccc
Q 018330 75 EFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVF 154 (358)
Q Consensus 75 ~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~ 154 (358)
.+++++|+||+|||++|+++++|||+||+++++ ++ +..++++|+.|++.|+++|||||||++++..+++++++++|
T Consensus 25 ~~~~~~~~~~~~yi~~~~~~~iViK~GG~~l~~---~~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~~~~~~~ 100 (456)
T 3d2m_A 25 DSFVAHFREAAPYIRQMRGTTLVAGIDGRLLEG---GT-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHY 100 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEEEEEECGGGGTS---TH-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTTTCCCCC
T ss_pred hHHHHHHHHhHHHHHHhcCCEEEEEEChHHhcC---ch-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHCCCCCEe
Confidence 678999999999999999999999999999998 55 47899999999999999999999999999999999999999
Q ss_pred cCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCee----EeecCCCccEEEeecCC--CCCCCCcccceeecCHHHH
Q 018330 155 RDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATA----VGLSGMDGRLFTARPSP--NSDKLGFVGEVARVDPTVI 228 (358)
Q Consensus 155 ~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~a----v~lsg~d~~ll~a~~~~--~~~d~g~~g~v~~i~~~~I 228 (358)
.+|+|+|+++.++.+.++. |++|..++++|+ +|+++ +++++.|++++++++.+ +++|++++|+|+.++.+.|
T Consensus 101 ~~g~r~t~~~~l~~~~~~~-G~~~~~l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i 178 (456)
T 3d2m_A 101 CRGLRVTDETSLGQAQQFA-GTVRSRFEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAAL 178 (456)
T ss_dssp GGGCCCBCHHHHHHHHHHH-HHHHHHHHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECHHHH
T ss_pred eCCeecCCHHHHHHHHHHH-hHHHHHHHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECHHHH
Confidence 9999999999999998885 999999999998 99998 99999999999998864 2357899999999999999
Q ss_pred HHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCC
Q 018330 229 EPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGK 308 (358)
Q Consensus 229 ~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~ 308 (358)
+.+|++|.|||++|++.+.+|+++|+|+|++|+.+|.+|+||+|+|+|||||||++ +.++|++|+++|+.+++..+.
T Consensus 179 ~~lL~~g~ipIi~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~---~~~~i~~i~~~e~~~~~~~g~ 255 (456)
T 3d2m_A 179 RFQLDAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRP---DGTLAETLSAQEAQSLAEHAA 255 (456)
T ss_dssp HHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCT---TSCBCSEEEHHHHHHHHTTCC
T ss_pred HHHHHCCCeEEECCcccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCC---CCCccccCCHHHHHHHHhccC
Confidence 99999999999999998999999999999999999999999999999999999986 368999999999999987653
Q ss_pred CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 309 VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 309 vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
|||.||+++|..+++.|+++++|+||+.|++|+.++|++++.||+|.+
T Consensus 256 --ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~ 303 (456)
T 3d2m_A 256 --SETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAK 303 (456)
T ss_dssp --HHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEEC
T ss_pred --CChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeec
Confidence 999999999999999999999999999999998999999999999963
|
| >3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-53 Score=426.42 Aligned_cols=265 Identities=31% Similarity=0.478 Sum_probs=244.7
Q ss_pred HHHhhhHHHHhhcC----CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcccc
Q 018330 80 ILSESLPFIQKFRG----KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFR 155 (358)
Q Consensus 80 ~l~~a~pyi~~~~~----k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~ 155 (358)
.+||++|||++|++ +++|||+||+++++ + +++++++|+.|+..|.++|||||||++++.+++++|++++|+
T Consensus 41 ~~re~~pyi~~f~~~~~~~~iViK~GGsv~~~---~--l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~ 115 (460)
T 3s6g_A 41 DGKEIREYLHRFSGIDQERFAVIKVGGAVIQD---D--LPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAADIPTERV 115 (460)
T ss_dssp THHHHHHHHHHTSSSCGGGSEEEEECHHHHHH---C--HHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHHSCCCCCC
T ss_pred CHHHHHHHHHHHhCCCCCCEEEEEEChHHhhh---H--HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCcccc
Confidence 45799999999998 89999999997775 2 388999999999999999999999999999999999999999
Q ss_pred CCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCC
Q 018330 156 DGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSG 235 (358)
Q Consensus 156 ~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G 235 (358)
+|+|+|++++|+++.|++ +++|..++++|+++|+++++++| +.+++++.. +.|||++|+|++++.+.|+.+|++|
T Consensus 116 ~G~RvTd~~~l~vv~~~l-g~vn~~lv~aL~~~G~~Av~lsg---~~~~a~~~~-~~d~g~~G~I~~v~~~~i~~lL~~g 190 (460)
T 3s6g_A 116 DGLRVTRDEAMPIIRDTL-TQANLALVDAIRDAGGRAAAVPR---GVFEADIVD-ADKLGRVGEPRHIHLDLVGSAARAG 190 (460)
T ss_dssp SSSCCBCTTTHHHHHHHH-HHHHHHHHHHHHHTTCCEEEECS---SSEEEEESC-TTTTBSEEEEEEECCHHHHHHHHTT
T ss_pred CCccCCCHHHHHHHHHHH-HHHHHHHHHHHHhCCCCceEEec---CeEEEEEec-CcccCccCcceEEcHHHHHHHHHCC
Confidence 999999999999999997 69999999999999999999996 444777654 5789999999999999999999999
Q ss_pred CeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHH-HHHHHHhCCCCCCCcH
Q 018330 236 HIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIK-GVKKMIEDGKVGGGMI 314 (358)
Q Consensus 236 ~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~-e~~~l~~~~~vtGGM~ 314 (358)
.|||++|++.+.+|+++|+|+|++|+.+|.+|+||+|+|+|||+|||++ .+++|++|+.. |++.++..++++|||.
T Consensus 191 ~IpVi~p~g~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~---~~~lI~~i~~~~e~~~l~~~~~~tGGM~ 267 (460)
T 3s6g_A 191 QAAILACLGETPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDE---DGDILSSINLATDFGDLMQADWVNGGMR 267 (460)
T ss_dssp CEEEEECEEECTTCCEEEECHHHHHHHHHHHHCCSEEEEECSSCSCBCT---TSSBCCEEEHHHHHHHHHHCSSSCHHHH
T ss_pred cEEEEECceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCCccccCC---CCeecceeCcHHHHHHHHhcCCCCCcHH
Confidence 9999999988889999999999999999999999999999999999985 36899999995 8999988888999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 315 PKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 315 ~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+||++|..+++ |+++++|++|+.|++|+.+||+++++||+|.+
T Consensus 268 ~Kl~aa~~a~~-gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~ 310 (460)
T 3s6g_A 268 LKLEEIKRLLD-DLPLSSSVSITRPSELARELFTHAGSGTLIRR 310 (460)
T ss_dssp HHHHHHHHHHH-TSCTTCEEEEECGGGHHHHHHSSCCSSEEEEC
T ss_pred HHHHHHHHHHh-CCCcEEEEEeCCCcHHHHHHhcCCCCceEEEc
Confidence 99999998887 66669999999999999999999999999964
|
| >4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-52 Score=421.99 Aligned_cols=265 Identities=31% Similarity=0.500 Sum_probs=226.5
Q ss_pred HHHHHhhhHHHHhhcC----CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcc
Q 018330 78 VDILSESLPFIQKFRG----KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPV 153 (358)
Q Consensus 78 ~~~l~~a~pyi~~~~~----k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~ 153 (358)
+...||++||+++|++ +++|||+||+++++ . .++++++|++|+..|.++|||||||++++.+++++|++++
T Consensus 29 ~~~~re~~~yl~~F~~~~~~~~iVIK~GGsv~~~---~--l~~la~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~ 103 (464)
T 4ab7_A 29 ISTKREVEQYLKYFTSVSQQQFAVIKVGGAIISD---N--LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPD 103 (464)
T ss_dssp --------------------CCEEEEECHHHHHH---C--HHHHHHHHHHHHHTTCCCEEEECCCHHHHHHHHHTTCCCC
T ss_pred cCChhhHHHHHHHHhCCCCCceEEEEECHHHhhc---h--HHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCcc
Confidence 3456899999999998 89999999999876 2 3789999999999999999999999999999999999999
Q ss_pred ccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHh
Q 018330 154 FRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVN 233 (358)
Q Consensus 154 ~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~ 233 (358)
|++|+|+|++++|++++|++ +++|+.++++|+++|+++++++| +++++++.. ++|||++|+|++++.+.|+.+|+
T Consensus 104 f~~G~RvTd~~tl~vv~mv~-~~vn~~lv~~L~~~G~~Avglsg---g~~~a~~~~-~~d~g~vG~I~~v~~~~I~~lL~ 178 (464)
T 4ab7_A 104 YIDGIRITDEHTMAVVRKCF-LEQNLKLVTALEQLGVRARPITS---GVFTADYLD-KDKYKLVGNIKSVTKEPIEASIK 178 (464)
T ss_dssp EETTEECBCHHHHHHHHHHH-HHHHHHHHHHHHHTTCCEEEECS---SSEEEEESC-TTTTBSBEEEEEECCHHHHHHHH
T ss_pred ccCCeecCCHHHHHHHHHHH-HHHHHHHHHHHHhCCCCeEEECC---CcEEEEecC-ccccCCcCcccccCHHHHHHHHH
Confidence 99999999999999999996 68999999999999999999985 567888753 67999999999999999999999
Q ss_pred CCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHH-HHHHHhCCCCCCC
Q 018330 234 SGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKG-VKKMIEDGKVGGG 312 (358)
Q Consensus 234 ~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e-~~~l~~~~~vtGG 312 (358)
+|.|||++|++.+.+|+++|+|+|++|+.+|.+|+|++|+|+|||+|||++ +++++|++|+.+| +++++.++.++||
T Consensus 179 ~G~IPVi~~~g~~~~G~~~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~--~~~~lI~~it~~e~~~~li~~~~~tgG 256 (464)
T 4ab7_A 179 AGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING--STGEKISMINLDEEYDDLMKQSWVKYG 256 (464)
T ss_dssp TTCEEEEESEEECTTCBEEECCHHHHHHHHHHHHCCSEEEEEESSCSEECT--TTCCEECEEEHHHHHHHHHTCSSCCHH
T ss_pred CCcEEEEcCCcCCCCCCEEEecHHHHHHHHHHHcCCCEEEEEecccccccC--CCCcCCcccCHHHHHHHHHhcCCCCCc
Confidence 999999999998889999999999999999999999999999999999986 3468999999975 7888888889999
Q ss_pred cHHHHHHHHHHHH---cCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 313 MIPKVNCCIRSLA---QGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 313 M~~Kv~aA~~al~---~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
|.|||+++..+++ .| ..++|++ +++|+.|+|+++++||+|.+
T Consensus 257 M~pKl~aa~aa~~~v~~g-~~v~I~~---~~~ll~eLft~~g~GT~I~~ 301 (464)
T 4ab7_A 257 TKLKIREIKELLDYLPRS-SSVAIIN---VQDLQKELFTDSGAGTMIRR 301 (464)
T ss_dssp HHHHHHHHHHHHTTSCTT-CEEEEEE---STTHHHHTTSSSTTSEEEEC
T ss_pred HHHHHHHHHHHHHhcccC-cEEEEec---ChHHHHHHhcCCCCceEEec
Confidence 9999995544443 36 5699998 78888999999999999964
|
| >3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-52 Score=392.02 Aligned_cols=234 Identities=33% Similarity=0.489 Sum_probs=223.1
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVL 173 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~vl 173 (358)
|++||||||+++++ . ..+++++|+.|+..|+++|||||||++++..++++|++++|.+|+|+|++++++++++++
T Consensus 37 k~iVIKiGGs~l~~---~--~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg~~~~~~~G~Rvtd~~~l~~v~~~l 111 (279)
T 3l86_A 37 DIIVIKIGGVASQQ---L--SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQVPVKKINGLRVTSKDDMVLVSHAL 111 (279)
T ss_dssp CEEEEEECTTGGGS---C--CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHHHHHHHH
T ss_pred ceEEEEEChHHHHh---H--HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcCCCCccCCCcccCcHHHHHHHHHHH
Confidence 79999999999987 2 468999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCccc
Q 018330 174 VGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYN 253 (358)
Q Consensus 174 ~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~ 253 (358)
+|++|+.|+++|+++|+++++++|.|+++++++++ ++.||+++|+|++++.+.|+.+|++|+|||++|++++++|+.+|
T Consensus 112 ~G~ln~~i~~~L~~~G~~a~~l~g~dg~llta~~~-~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi~~v~~~~~G~~~~ 190 (279)
T 3l86_A 112 LDLVGKNLQEKLRQAGVSCQQLKSDIKHVVAADYL-DKDTYGYVGDVTHINKRVIEEFLENRQIPILASLGYSKEGDMLN 190 (279)
T ss_dssp HHTTHHHHHHHHHHTTCCEEECSGGGGGTEEEEES-CHHHHBSBEEEEEECHHHHHHHHHTTCEEEEESEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCcCCEEEeecc-CccccCcccccchhhHHHHHHHHhCCcEEEECCcEECCCCCEee
Confidence 99999999999999999999999999999999987 46689999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEE
Q 018330 254 INADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASI 333 (358)
Q Consensus 254 i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~I 333 (358)
+|+|++|+++|.+|+||+|+|+|||||||++ +++|++++++|+++++..++++|||.+|+++|..+++.|++++||
T Consensus 191 i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~d----~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~Gv~~v~I 266 (279)
T 3l86_A 191 INADYLATAVAVALAADKLILMTNVKGVLEN----GAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLI 266 (279)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEECSSSSCEET----TEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEE
T ss_pred cCHHHHHHHHHHHcCCCEEEEEeCCCccccC----CEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999953 689999999999999988889999999999999999999999999
Q ss_pred EeCC
Q 018330 334 IDGR 337 (358)
Q Consensus 334 i~G~ 337 (358)
+|+.
T Consensus 267 ~~~~ 270 (279)
T 3l86_A 267 GDNL 270 (279)
T ss_dssp ESSS
T ss_pred eccC
Confidence 9964
|
| >3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-52 Score=419.21 Aligned_cols=263 Identities=33% Similarity=0.518 Sum_probs=241.9
Q ss_pred HhhhHHHHhhcC----CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCC
Q 018330 82 SESLPFIQKFRG----KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDG 157 (358)
Q Consensus 82 ~~a~pyi~~~~~----k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g 157 (358)
||++|||++|++ +++|||+||+++++ + +++++++|+.|+..|.++|||||||++++.+++++|++++|++|
T Consensus 46 re~~pyi~~f~~~~~~~~iViK~GG~v~~~---~--l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~~~gi~~~f~~G 120 (467)
T 3s6k_A 46 KEISQYLKRFSQLDAKRFAVVKVGGAVLRD---D--LEALTSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEKQTVNG 120 (467)
T ss_dssp HHHHHHHHSSSSSCSTTSCCCCCCHHHHTT---C--CHHHHHHHHHHHTTSCCCCCCCCCCHHHHHHHHTTSCCCCCCSS
T ss_pred HHHHHHHHHHhCCCCCcEEEEEEChHHhhh---H--HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCC
Confidence 599999999998 89999999997776 2 37899999999999999999999999999999999999999999
Q ss_pred cccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCe
Q 018330 158 LRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHI 237 (358)
Q Consensus 158 ~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~I 237 (358)
+|+|++++|+++.|++ +++|..|+++|+++|+++++++| +.+++++.. +.|||++|+|+.++.+.|+.+|++|.|
T Consensus 121 ~RvTd~~~l~vv~~~~-g~vn~~Lv~aL~~~G~~Av~lsg---~~~~a~~~~-~~d~g~~G~I~~v~~~~i~~lL~~g~I 195 (467)
T 3s6k_A 121 LRVTSPHALAIVRKVF-QASNLKLVEALQQNGARATSITG---GVFEAEYLN-RDTYGLVGEVKAVNLAPIEASLQAGSI 195 (467)
T ss_dssp SCCBCHHHHHHHHHHH-HHHHHHHHHHHHHHTCCBCCCCS---SSBCCCBSC-SSSSBSBBCCCCBCCHHHHTHHHHTCB
T ss_pred ccCCCHHHHHHHHHHH-HHHHHHHHHHHHhCCCCceEEcC---ccEEEEecc-CcccCccceEEEEcHHHHHHHHHCCCE
Confidence 9999999999999996 69999999999999999999986 334666543 578999999999999999999999999
Q ss_pred EEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHH-HHHHHHhCCCCCCCcHHH
Q 018330 238 PVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIK-GVKKMIEDGKVGGGMIPK 316 (358)
Q Consensus 238 PVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~-e~~~l~~~~~vtGGM~~K 316 (358)
||++|++.+.+|+++|+|+|++|+.+|.+|+||+|+|+|||+|||++ .+++|++++.. |++.++..++++|||.+|
T Consensus 196 pVi~pvg~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~---~~~lI~~i~~~~e~~~l~~~~~~tGGM~~K 272 (467)
T 3s6k_A 196 PVITSLGETPSGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDA---EGKLIDSINLSTEYDHLMQQPWINGGMRVK 272 (467)
T ss_dssp CCCCSCCCCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCSSCSCCCS---SCCCCCCCCTTTTTHHHHTSSSCCSHHHHH
T ss_pred EEEECceECCCCcEEecCHHHHHHHHHHhcCCCEEEEEecccceeCC---CCCCccccChHHHHHHHHhcCCCCCchHHH
Confidence 99999988889999999999999999999999999999999999985 36899999985 889998888899999999
Q ss_pred HHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 317 v~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
|++|..+++ |+++++|++|+.|++|+.+||+++++||+|.+
T Consensus 273 l~aa~~a~~-gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~ 313 (467)
T 3s6k_A 273 IEQIKDLLD-RLPLESSVSITRPADLAKELFTHKGSGTLVRR 313 (467)
T ss_dssp HHHHHHHHT-TSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCC
T ss_pred HHHHHHHHh-CCCcEEEEEeCCchHHHHHHhcCCCcceEEeC
Confidence 999988876 66669999999999999999999999999864
|
| >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=360.07 Aligned_cols=254 Identities=32% Similarity=0.491 Sum_probs=235.0
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCC-eEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGL-RPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMV 172 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~-~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~v 172 (358)
+++||||||+++++ ++.+.+++++|+.+...|. ++|||||||++++.++++++++..+.+|+|+|+.++++.++++
T Consensus 3 ~~~ViK~GGs~l~~---~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~~~~~glr~t~~~~l~~~~~~ 79 (258)
T 1gs5_A 3 NPLIIKLGGVLLDS---EEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGA 79 (258)
T ss_dssp CCEEEEECGGGGGC---HHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCEETTEECBCHHHHHHHHHH
T ss_pred ccEEEEEChhHhCC---hHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCcceeCCEeeCCHHHHHHHHHH
Confidence 57999999999999 7767899999998876655 5899999999999999999999889999999999999999999
Q ss_pred HhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCcc
Q 018330 173 LVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSY 252 (358)
Q Consensus 173 l~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~ 252 (358)
+.+++|+.+++.|+++|++++++++.+++++++++.. .|++++|+++.++.+.|+.+|++|.|||++|++.+.+|+++
T Consensus 80 l~~~~n~~l~~~l~~~G~~a~~l~~~~~~~~~~~~~~--~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g~~~~g~~~ 157 (258)
T 1gs5_A 80 LAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLD--EELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLM 157 (258)
T ss_dssp HHTHHHHHHHHHHHHTTCCEEEECTTGGGCEEEEECC--GGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTTSCEE
T ss_pred HhccchHHHHHHHHHCCCCeEEEeecCCCEEEEEEcC--CCCCCcCceeEECHHHHHHHHHCCCEEEEeCCcCCCCCcEE
Confidence 9999999999999999999999999999999999864 57889999999999999999999999999999888999999
Q ss_pred ccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEE
Q 018330 253 NINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTAS 332 (358)
Q Consensus 253 ~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~ 332 (358)
|+|+|++|+.+|.+|+|| |+|+|||||||+++ +++|++++++|+++++..+.++|||.+|+++|.++++.+..+++
T Consensus 158 ~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d---~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~~~v~ 233 (258)
T 1gs5_A 158 NVNADQAATALAATLGAD-LILLSDVSGILDGK---GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVD 233 (258)
T ss_dssp ECCHHHHHHHHHHHHTCE-EEEEESSSSCBCTT---SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEE
T ss_pred EecHHHHHHHHHHHhCCc-EEEEeCCCceECCC---CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999999 99999999999862 58999999999999998889999999999999999876434599
Q ss_pred EEeCCCcchHHHHHHcCCCCceEEc
Q 018330 333 IIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 333 Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
|+||+.|+.| .++|+++++||+|.
T Consensus 234 I~~~~~~~~l-~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 234 IASWRHAEQL-PALFNGMPMGTRIL 257 (258)
T ss_dssp EEESSCGGGH-HHHHTTCCSSEEEC
T ss_pred EecCCCchHH-HHHhcCCCCcEEEe
Confidence 9999999985 78999999999996
|
| >3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=360.47 Aligned_cols=240 Identities=22% Similarity=0.315 Sum_probs=196.9
Q ss_pred CCeEEEEECCcccCCCCh------hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcccc---------CC
Q 018330 93 GKTIVVKYGGAAMKPNQK------DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFR---------DG 157 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~------~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~---------~g 157 (358)
||++||||||++|++++. +..+.+++++|+.++ +.++|||||||++++.+++++|++++|. .|
T Consensus 2 ~k~iVIKlGG~~l~~~~~~~~~~~~~~l~~l~~~i~~l~--~~~~vlVhGGG~~~~~~~~~~gi~~~~~~~~g~~~~~~G 79 (269)
T 3ll9_A 2 SHMIILKLGGSVITRKDSEEPAIDRDNLERIASEIGNAS--PSSLMIVHGAGSFGHPFAGEYRIGSEIENEEDLRRRRFG 79 (269)
T ss_dssp -CCEEEEECHHHHEECCSSSCEECHHHHHHHHHHHHHHC--CSSEEEEECCGGGTHHHHHHHTTTSCCCSHHHHHHHHHH
T ss_pred CCEEEEEEChhheecCccccccccHHHHHHHHHHHHHhc--CCCEEEEECCcHHHHHHHHHcCCCcccccCcccccccch
Confidence 689999999999998652 123467888888775 6899999999999999999999999886 67
Q ss_pred cccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCe
Q 018330 158 LRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHI 237 (358)
Q Consensus 158 ~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~I 237 (358)
+|+|+.++ .++|+.++++|+++|++++++++.+..++. +|+++.++.+.|+.+|++|+|
T Consensus 80 ~rvT~~~~---------~~ln~~l~~~L~~~G~~a~~l~g~~~~~~~------------~g~v~~v~~~~i~~lL~~g~i 138 (269)
T 3ll9_A 80 FALTQNWV---------KKLNSHVCDALLAEGIPAVSMQPSAFIRAH------------AGRISHADISLIRSYLEEGMV 138 (269)
T ss_dssp HHHHHHHH---------HHHHHHHHHHHHHTTCCEEECCGGGTEEEE------------TTEEEEECCHHHHHHHHTTCE
T ss_pred hhHHHHHH---------HHHHHHHHHHHHHCCCcEEEEcchHcCeEe------------cCeeeeecHHHHHHHHHCCCE
Confidence 77776654 378999999999999999999998876654 578889999999999999999
Q ss_pred EEEcC-CccCCC--CCccccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHh---CCC
Q 018330 238 PVIAS-VAADEF--GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIE---DGK 308 (358)
Q Consensus 238 PVi~g-v~~~~~--G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~---~~~ 308 (358)
||++| ++.+.+ |+.+|+|+|++|+++|.+|+||+|+|+|||||||+++|. |+ ++|+++++.|+++++. .++
T Consensus 139 pVi~~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~ 218 (269)
T 3ll9_A 139 PVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTD 218 (269)
T ss_dssp EEEECEEEEBSCTTTSEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC--------------
T ss_pred EEECCCEEecccccCcceecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCc
Confidence 99999 677777 899999999999999999999999999999999987552 44 6899999999988765 457
Q ss_pred CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCC-ceEEc
Q 018330 309 VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGA-GTMIT 357 (358)
Q Consensus 309 vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~-GT~I~ 357 (358)
++|||.+||++|+.+++.|+ ++||+||+.|++|+ ++|+++++ ||+|.
T Consensus 219 ~tgGM~~Kl~aa~~a~~~Gv-~v~I~~g~~~~~l~-~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 219 VTGGMVGKIRELLLLAEKGV-ESEIINAAVPGNIE-RALLGEEVRGTRIT 266 (269)
T ss_dssp -----SHHHHHHHHHHHTTC-CEEEEESSSTTHHH-HHHHTCCCSSEEC-
T ss_pred CcCCcHHHHHHHHHHHhCCC-eEEEEeCCCchHHH-HHHCCCCCCcEEEE
Confidence 89999999999999999999 59999999999985 89999999 99986
|
| >3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=334.23 Aligned_cols=236 Identities=22% Similarity=0.281 Sum_probs=200.9
Q ss_pred hcCC-eEEEEECCcccCCCCh-----hHHHHHHHHHHHHhHhCC------CeEEEEECChHHHhHHHHHcCCCcc----c
Q 018330 91 FRGK-TIVVKYGGAAMKPNQK-----DNLLASVVKDLVLLSVVG------LRPVLVHGGGPEINFWLKRFGIEPV----F 154 (358)
Q Consensus 91 ~~~k-~iVIKlGGs~l~~k~~-----~~l~~~~~~~Ia~L~~~G------~~vVLVhGgg~~i~~~l~~~gi~~~----~ 154 (358)
|+|. ++|||+||++|++++. +..+.+++++|+.++..| .++|||||||++++.+++++|+++. |
T Consensus 3 ~~~~m~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~i~~l~~~G~~~~~~~~vVlVhGGG~~~~~~~~~lgi~~~~~~~~ 82 (266)
T 3k4o_A 3 HGGSMLTILKLGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYLKIEDGKKIF 82 (266)
T ss_dssp ----CEEEEEECTTSSCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHGGGEEECSSSEEE
T ss_pred CCCceEEEEEEchHHeeCCCccCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEeCchHHHHHHHHHcCCCcccCccc
Confidence 6774 5999999999998531 235688999999988878 9999999999999999999999887 7
Q ss_pred c---CCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHH
Q 018330 155 R---DGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPL 231 (358)
Q Consensus 155 ~---~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~l 231 (358)
. .|+|+|+.+++ ++|+.|+++|+++|++++++++.|..++. .| ++++.+.|+.+
T Consensus 83 ~~~~~G~r~T~~a~~---------~ln~~l~~~l~~~G~~a~~l~~~d~~~~~------------~g--~~v~~~~i~~l 139 (266)
T 3k4o_A 83 INMEKGFWEIQRAMR---------RFNNIIIDTLQSYDIPAVSIQPSSFVVFG------------DK--LIFDTSAIKEM 139 (266)
T ss_dssp CCHHHHHHHHHHHHH---------HHHHHHHHHHHTTTCCEEEECGGGTCEES------------SS--CBCCCHHHHHH
T ss_pred ccccCceeHHHHHHH---------HHHHHHHHHHHHCCCcEEEeeHHHcCccc------------Cc--eEecHHHHHHH
Confidence 6 78888776643 68999999999999999999987765542 12 56789999999
Q ss_pred HhCCCeEEEcC-CccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhC----
Q 018330 232 VNSGHIPVIAS-VAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIED---- 306 (358)
Q Consensus 232 L~~G~IPVi~g-v~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~---- 306 (358)
|++|.|||+++ ++.+.+|+.+|+|+|++|+++|.+|+||+|+|+||||||| + || +++++++.+|++++.+.
T Consensus 140 L~~g~ipVi~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~--d~-~~i~~~~~~e~~~l~~~~~~~ 215 (266)
T 3k4o_A 140 LKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVL-I--DN-KPIKRIDKNNIYKILNYLSGS 215 (266)
T ss_dssp HHTTCEEEEECEEEEESSSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSSB-S--SS-SBCSEECTTTHHHHHHHHHST
T ss_pred HHCCCEEEEeCCEEEcCCCCeeeeCHHHHHHHHHHHcCCCEEEEEecCCeEE-e--CC-eecCcCCHHHHHHHHHHhccc
Confidence 99999999999 6777788899999999999999999999999999999999 4 33 78999998777776543
Q ss_pred --CCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 307 --GKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 307 --~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
++++|||.+||++|..+++ +++|+||+.|+.| .++|+++++||+|.+
T Consensus 216 ~~~~~tGGM~~Kv~aa~~a~~----~v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 264 (266)
T 3k4o_A 216 NSIDVTGGMKYKIEMIRKNKC----RGFVFNGNKANNI-YKALLGEVEGTEIDF 264 (266)
T ss_dssp TCSCCSSHHHHHHHHHHHTTC----EEEEEETTSTTHH-HHHHTTCCCSEEEEC
T ss_pred cCCcccCCHHHHHHHHHHHhc----CEEEEeCCCccHH-HHHhCCCCCceEEEe
Confidence 5789999999999998887 6999999999985 789999999999975
|
| >2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=332.88 Aligned_cols=256 Identities=22% Similarity=0.292 Sum_probs=209.1
Q ss_pred cCCeEEEEECCcccCCCCh---h----HHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHH
Q 018330 92 RGKTIVVKYGGAAMKPNQK---D----NLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDAN 164 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~---~----~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~ 164 (358)
+++++|||+||++|++++. . +.+..++++|+.|++.|+++|||||||++++.++++++++++| |++.
T Consensus 3 ~~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~~~~~------t~~~ 76 (316)
T 2e9y_A 3 SGRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEALPPE------RPRQ 76 (316)
T ss_dssp -CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHTSCTT------SCCC
T ss_pred CCCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCCCCCC------CCHH
Confidence 3689999999999995431 0 3557899999999999999999999999999999999988754 6666
Q ss_pred HHHHHHHHHhhhh----HHHHHHHHHHcCCee--------EeecCCCccEEEeecC-C---C-------CCCCCcc--cc
Q 018330 165 TMEIVSMVLVGRV----NKSLVSLINKAGATA--------VGLSGMDGRLFTARPS-P---N-------SDKLGFV--GE 219 (358)
Q Consensus 165 ~~~~v~~vl~g~l----n~~lv~~L~~~Gi~a--------v~lsg~d~~ll~a~~~-~---~-------~~d~g~~--g~ 219 (358)
.|+.+.++.+|++ +..|.+.|.++|+++ +++++.|++++.+++. + + ..+++|+ |+
T Consensus 77 ~l~~~~~~~~G~i~~~l~~~l~~~l~~~g~~a~~~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~ 156 (316)
T 2e9y_A 77 PLYIATAMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRD 156 (316)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEEC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCccccceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeecc
Confidence 7888877767766 467778888999987 7999988765433310 0 0 0123443 33
Q ss_pred --------------eeecCHHHHHHHHhCCCeEEEc-----CCccCCCC----CccccChHHHHHHHHHHcCCCeEEEee
Q 018330 220 --------------VARVDPTVIEPLVNSGHIPVIA-----SVAADEFG----QSYNINADTVAGELAAALGAEKLILLT 276 (358)
Q Consensus 220 --------------v~~i~~~~I~~lL~~G~IPVi~-----gv~~~~~G----~~~~i~sD~~Aa~lA~~L~AdkLi~lT 276 (358)
++.++.+.|+.||++|.|||++ +++.+++| ..+|+|+|++|+++|.+|+||+|+|+|
T Consensus 157 ~g~g~r~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~~~~~g~~~g~~~~id~D~~Aa~lA~~l~Ad~LiilT 236 (316)
T 2e9y_A 157 PRGGFRRVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADLLVILT 236 (316)
T ss_dssp TTSSEEEEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEEECTTSCEEECSCCCCHHHHHHHHHHHTTCSEEEEEE
T ss_pred ccccceecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCeeECCCCCeecceeeeCHHHHHHHHHHHcCCCEEEEEe
Confidence 6678999999999999999999 56678888 778899999999999999999999999
Q ss_pred ccccccccccccC-cccccccHHHHHHHHhCCC-CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCce
Q 018330 277 DVAGILENREDPM-SLVKEIDIKGVKKMIEDGK-VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGT 354 (358)
Q Consensus 277 DV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~-vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT 354 (358)
||||||+++++|+ ++|++++++|+++++..+. .+|||.+|+++|..+++.|+++++|++ ++. +.++|++ +.||
T Consensus 237 dVdGVy~dp~~p~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~-l~~~l~g-~~GT 311 (316)
T 2e9y_A 237 DVPGVAVNYGREGERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGS---LEE-ARQVLSL-QAGT 311 (316)
T ss_dssp SSSSCEETTTSTTCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEE---STT-HHHHHTT-SSSE
T ss_pred CchHhhCCCCCCCCcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECc---HHH-HHHHHcC-CCCe
Confidence 9999999766675 7999999999999987665 459999999999999999997799997 444 4788987 8999
Q ss_pred EEcC
Q 018330 355 MITG 358 (358)
Q Consensus 355 ~I~~ 358 (358)
+|.+
T Consensus 312 ~i~~ 315 (316)
T 2e9y_A 312 VVML 315 (316)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9964
|
| >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=321.58 Aligned_cols=234 Identities=20% Similarity=0.273 Sum_probs=186.1
Q ss_pred CeEEEEECCcccCCCCh-----hHHHHHHHHHHHHhHhCCCeEE-EEECChHHHhHHHHHcCCCccccCCcccCCHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK-----DNLLASVVKDLVLLSVVGLRPV-LVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTME 167 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~-----~~l~~~~~~~Ia~L~~~G~~vV-LVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~ 167 (358)
|++||||||+++++++. +..+.+++++|+. |+++| ||||||++++.+++++|+++.|.+ ++...|.
T Consensus 4 k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~----G~~vv~lVhGGG~~~~~~~~~~gi~~~~~~----~d~~gl~ 75 (249)
T 3ll5_A 4 TMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSFGHIKAMEFGLPGPKNP----RSSIGYS 75 (249)
T ss_dssp CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT----CTTEEEEEECCGGGTHHHHHHHTCSEECCH----HHHHHHH
T ss_pred eEEEEEECccEEecCcccccchHHHHHHHHHHHhc----CCceEEEEECccHHHHHHHHHhCCCcCCCc----cccccHH
Confidence 79999999999998531 1345667777764 99999 999999999999999999987643 5667788
Q ss_pred HHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccC
Q 018330 168 IVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAAD 246 (358)
Q Consensus 168 ~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~ 246 (358)
+..+++ .++|+.++++|+++|++++++++.|. +++|++ +.+.|+.+|++|.|||++| ...+
T Consensus 76 ~t~~~~-~~ln~~~v~~l~~~G~~a~~l~~~~~--------------~~~g~v---~~~~i~~ll~~g~ipVi~~~~~~~ 137 (249)
T 3ll5_A 76 IVHRDM-ENLDLMVIDAMIEMGMRPISVPISAL--------------RYDGRF---DYTPLIRYIDAGFVPVSYGDVYIK 137 (249)
T ss_dssp HHHHHH-HHHHHHHHHHHHHTTCCEEECCGGGS--------------CBSSSB---CCHHHHHHHHTTCEEEEECEEEEE
T ss_pred HHHHHH-HHHHHHHHHHHHHCCCcEEEEcHHHc--------------ccccEE---cHHHHHHHHHCCCEEEECCCEEEc
Confidence 777773 58999999999999999999987543 345666 8899999999999999998 3445
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
.+|+.+|+|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|+++. +++......++++|||.+|+++|+.+
T Consensus 138 ~~~~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~~~~~~~~~tGgM~~Kl~aA~~a 216 (249)
T 3ll5_A 138 DEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNITFDRVQNDVTGGIGKKFESMVKM 216 (249)
T ss_dssp ETTEEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC-------------HHHHHHHHHH
T ss_pred CCCceeeecHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHhcccCCCeeECCHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999755 565 5899994 34444445567899999999999999
Q ss_pred -HHcCCCEEEEEeCCCcchHHHHHHcCCCC-ceEEc
Q 018330 324 -LAQGVRTASIIDGRVEHSLLLEILTDAGA-GTMIT 357 (358)
Q Consensus 324 -l~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~-GT~I~ 357 (358)
++.|+ +++|+||+.|++|+. |.++++ ||+|.
T Consensus 217 ~~~~Gv-~v~I~~g~~~~~l~~--l~g~~~~GT~i~ 249 (249)
T 3ll5_A 217 KSSVKN-GVYLINGNHPERIGD--IGKESFIGTVIR 249 (249)
T ss_dssp HTTCTT-CEEEEETTSGGGGGG--TTSTTCCSEEEC
T ss_pred HHhcCC-EEEEEeCCChhHHHH--hCCCCCCCEEeC
Confidence 88899 599999999999876 667888 99984
|
| >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-43 Score=332.21 Aligned_cols=246 Identities=20% Similarity=0.275 Sum_probs=192.1
Q ss_pred HHHHhhcCCeEEEEECCcccCCCCh-----hHHHHHHHHHHHHhHhCCC-eEEEEECChHHHhHHHHHcCCCccccCCcc
Q 018330 86 PFIQKFRGKTIVVKYGGAAMKPNQK-----DNLLASVVKDLVLLSVVGL-RPVLVHGGGPEINFWLKRFGIEPVFRDGLR 159 (358)
Q Consensus 86 pyi~~~~~k~iVIKlGGs~l~~k~~-----~~l~~~~~~~Ia~L~~~G~-~vVLVhGgg~~i~~~l~~~gi~~~~~~g~r 159 (358)
.|++.+++ ++||||||+++++++. .+.+..++++|+.|++.|+ ++|||||||++++.+++++++++.+.
T Consensus 17 ~~~~~~~~-~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l~~~~~~~~~~---- 91 (286)
T 3d40_A 17 RGSHMTPD-FLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHDSTHAFS---- 91 (286)
T ss_dssp CSTTSCCS-EEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC------------CCT----
T ss_pred hhhccCCC-EEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHcCCCcccc----
Confidence 37777754 9999999999998531 2355889999999988898 79999999999999998888775432
Q ss_pred cCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEE
Q 018330 160 VTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPV 239 (358)
Q Consensus 160 vt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPV 239 (358)
.. ...+. .+++|..|+++|+++|++++++++.+.++ + . .| ++.++.+.|+.+|++|.|||
T Consensus 92 ---~~-~~~vt---~g~l~~~l~~~l~~~G~~a~~l~~~~~~~-t-~----------dg-~~~~~~~~i~~lL~~g~IpV 151 (286)
T 3d40_A 92 ---LA-GLTEA---TFEVKKRWAEKLRGIGVDAFPLQLAAMCT-L-R----------NG-IPQLRSEVLRDVLDHGALPV 151 (286)
T ss_dssp ---TH-HHHHH---HHHHHHHHHHHHHHTTCCEEECCGGGTEE-E-E----------TT-EEEECCSHHHHHHHTTCEEE
T ss_pred ---hh-cchhh---HHHHHHHHHHHHHHcCCcEEEEEeecCCc-c-c----------CC-eEEehHHHHHHHHHCcCEEE
Confidence 11 11112 36789999999999999999999887775 2 1 13 67788999999999999999
Q ss_pred EcC-CccCCCCCccccChHHHHHHHHHH-cCCCeEEEeeccccccccccccCcccccccHHHHHHHHh------CCCCCC
Q 018330 240 IAS-VAADEFGQSYNINADTVAGELAAA-LGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIE------DGKVGG 311 (358)
Q Consensus 240 i~g-v~~~~~G~~~~i~sD~~Aa~lA~~-L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~------~~~vtG 311 (358)
++| ++.+.+|+.+++|+|++|+++|.+ |+||+|+|+|||||||+++|++.++|++|++.|++++.+ .++++|
T Consensus 152 i~gd~~~~~~g~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~~a~~i~~is~~e~~~l~~~~~~~~~~~~tg 231 (286)
T 3d40_A 152 LAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAGGDTILPEVDARSPEQAYAALWGSSEWDATG 231 (286)
T ss_dssp EECEEEEBTTSCEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC---CEECCEEETTSCHHHHHHHHHSCC----C
T ss_pred EcCCeEEcCCCCEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCCCCcCCcccCHHHHHHHHHhhccccCCcccC
Confidence 999 777888988999999999999999 999999999999999998544368999999987666643 456899
Q ss_pred CcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcC-----CCC-ceEEcC
Q 018330 312 GMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTD-----AGA-GTMITG 358 (358)
Q Consensus 312 GM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~-----~g~-GT~I~~ 358 (358)
||.+|+++|..+++.|++ ++|+||+.|++| .++|++ +.+ ||.|.+
T Consensus 232 gM~~Kl~Aa~~a~~~gv~-v~I~~g~~p~~l-~~l~t~~~~~~~~~~~t~i~~ 282 (286)
T 3d40_A 232 AMHTKLDALVTCARRGAE-CFIMRGDPGSDL-EFLTAPFSSWPAHVRSTRITT 282 (286)
T ss_dssp HHHHHHHHHHHHHHTTCE-EEEEECCTTCCC-GGGGSCGGGSCTTCCCEEEEC
T ss_pred cHHHHHHHHHHHHHCCCc-EEEEeCCCCCcH-HHHhcCcccCcccccceeeee
Confidence 999999999999999998 999999999998 889998 776 999964
|
| >2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-41 Score=324.28 Aligned_cols=256 Identities=23% Similarity=0.302 Sum_probs=202.8
Q ss_pred CCeEEEEECCcccCCCC-h-h---HHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQ-K-D---NLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTME 167 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~-~-~---~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~ 167 (358)
++++|||+||++++++. . + +.+..++++|+.|++.|+++|||||||++++.++++++++++| +++.+.++
T Consensus 2 ~k~iVIKlGGs~l~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~~~~~~~~-----~~~~~~l~ 76 (310)
T 2we5_A 2 GKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSE-----KNPAMPLD 76 (310)
T ss_dssp CCEEEEECCGGGGCCSSCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTCSS-----SSCCCCHH
T ss_pred CcEEEEEEChHHhcCCCCChHHHHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhHHHHHcCCCCCC-----CCCHHHHH
Confidence 57999999999998621 1 1 4557899999999999999999999999999999998877654 46777799
Q ss_pred HHHHHHhhhhHHHHH----HHHHHcCCee--------EeecCCCcc------------------EEEeecC--CCCCCCC
Q 018330 168 IVSMVLVGRVNKSLV----SLINKAGATA--------VGLSGMDGR------------------LFTARPS--PNSDKLG 215 (358)
Q Consensus 168 ~v~~vl~g~ln~~lv----~~L~~~Gi~a--------v~lsg~d~~------------------ll~a~~~--~~~~d~g 215 (358)
++.++.+|+++..+. ..|...|++. .+++..|.. ++.+... ......+
T Consensus 77 ~~~a~~~G~l~~~i~~al~~~l~~~g~~~~v~~~l~~~~v~~~d~~f~~~~~~vg~~~t~~da~~l~~~~~~~~~~~~~~ 156 (310)
T 2we5_A 77 TCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRG 156 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCHHHHSCCEEEEEEECHHHHHHHHTTTCCEEECTTSC
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcCCchhhHhhhhhhcccccchhhcccCceeEEeccHHHHHHHHhccccccccCCcc
Confidence 998888898876555 4577788763 344333332 1111000 0000122
Q ss_pred cc---c---ceeecCHHHHHHHHhCCCeEEEc-----CC-ccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccc
Q 018330 216 FV---G---EVARVDPTVIEPLVNSGHIPVIA-----SV-AADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILE 283 (358)
Q Consensus 216 ~~---g---~v~~i~~~~I~~lL~~G~IPVi~-----gv-~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~ 283 (358)
|. | +++.++.+.|+.+|++|+|||++ |+ ..+..|+.+|+|+|++|+++|.+|+||+|+|+|||||||+
T Consensus 157 ~~~vv~sp~~i~~v~~~~i~~lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~ 236 (310)
T 2we5_A 157 WRKVVPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCI 236 (310)
T ss_dssp EEEEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEETTTTEECCCCCCHHHHHHHHHHHTTCSEEEEECSCSSCEE
T ss_pred eeeccCCcccceeehHHHHHHHHHCCCEEEEECCCCCCCcCCCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeCchHhhC
Confidence 31 3 55668999999999999999999 44 4556788999999999999999999999999999999999
Q ss_pred cccccC-cccccccHHHHHHHHhCCCCC-CCcHHHHHHHHHHHHcCCC-EEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 284 NREDPM-SLVKEIDIKGVKKMIEDGKVG-GGMIPKVNCCIRSLAQGVR-TASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 284 ~~~dp~-~lI~~I~~~e~~~l~~~~~vt-GGM~~Kv~aA~~al~~Gv~-~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
++++|+ ++|++++++|+++++..+.++ |||.+|+++|..+++.|+. +++|++ ++. +.++|++++.||+|.
T Consensus 237 dp~~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~-l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 237 NYGKPDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS---LEN-LGSMSGDEIVGTVVT 309 (310)
T ss_dssp STTSTTCEECCEEEHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGG-GGGCBTTBCCSEEEE
T ss_pred CCCCCCCeECCEEcHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECc---HHH-HHHHHcCCCCCeEEe
Confidence 766674 799999999999998877666 9999999999999999994 899997 445 468899989999996
|
| >1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=322.96 Aligned_cols=256 Identities=23% Similarity=0.358 Sum_probs=204.5
Q ss_pred cCCeEEEEECCcccCCCCh-------hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHH
Q 018330 92 RGKTIVVKYGGAAMKPNQK-------DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDAN 164 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~-------~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~ 164 (358)
+++++||||||++|++++. .+.+.+++++|+.|++.|+++|||||||++++.++.++++.++| + +++..
T Consensus 1 m~k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~~~-~---~~~~~ 76 (314)
T 1e19_A 1 MGKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQAT-Y---GIPAQ 76 (314)
T ss_dssp -CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHH-H---CCCCC
T ss_pred CCCEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCcccc-C---CCChh
Confidence 3689999999999996431 13457899999999999999999999999999999888877655 2 45666
Q ss_pred HHHHHHHHHhhhhH----HHHHHHHHHcCCee--------EeecCCCccE----------EE---eecCCCCCCCCcc--
Q 018330 165 TMEIVSMVLVGRVN----KSLVSLINKAGATA--------VGLSGMDGRL----------FT---ARPSPNSDKLGFV-- 217 (358)
Q Consensus 165 ~~~~v~~vl~g~ln----~~lv~~L~~~Gi~a--------v~lsg~d~~l----------l~---a~~~~~~~d~g~~-- 217 (358)
.++++.++++|++| ..|.+.|.++|+++ +++++.|+.+ ++ +++.. .|+||+
T Consensus 77 ~l~~~~a~~~G~i~~~l~~~l~~~l~~~gi~a~~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~--~~~g~~~~ 154 (314)
T 1e19_A 77 PMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLA--REKGWIVK 154 (314)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHH--HHHCCEEE
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHcCCchhhhhhheeeeecccchhhccccccccceecHHHhhhhh--hhcCcccc
Confidence 78888888778655 45557888999986 6788888533 31 11100 023332
Q ss_pred cc--------------eeecCHHHHHHHHhCCCeEEEc-----CCccCCC---CCccccChHHHHHHHHHHcCCCeEEEe
Q 018330 218 GE--------------VARVDPTVIEPLVNSGHIPVIA-----SVAADEF---GQSYNINADTVAGELAAALGAEKLILL 275 (358)
Q Consensus 218 g~--------------v~~i~~~~I~~lL~~G~IPVi~-----gv~~~~~---G~~~~i~sD~~Aa~lA~~L~AdkLi~l 275 (358)
|+ ++.++.+.|+.||++|+|||++ |++.+.+ |..+|+|+|++|+.+|.+|+||+|+|+
T Consensus 155 g~~~~~~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li~l 234 (314)
T 1e19_A 155 EDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMIL 234 (314)
T ss_dssp ECTTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEE
T ss_pred ccccccccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeEECCCCcceeEEeccHHHHHHHHHHHcCCCEEEEe
Confidence 22 6778999999999999999998 5555555 567899999999999999999999999
Q ss_pred eccccccccccccC-cccccccHHHHHHHHhCCC-CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCc
Q 018330 276 TDVAGILENREDPM-SLVKEIDIKGVKKMIEDGK-VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAG 353 (358)
Q Consensus 276 TDV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~-vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~G 353 (358)
|||||||+++|+|+ ++|++++++|+++++..+. .+|||.+||++|.++++.++.+++|+++ +. +.++|++ +.|
T Consensus 235 TdVdGvy~~~p~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~---~~-l~~~~~g-~~G 309 (314)
T 1e19_A 235 TDVNGAALYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHL---EK-AVEALEG-KTG 309 (314)
T ss_dssp ESSSSCEETTTSTTCEECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEG---GG-HHHHHTT-SSS
T ss_pred ccCCEEECCCCCCCCeECCEECHHHHHHHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecH---HH-HHHHHcC-CCC
Confidence 99999999877774 6999999999999987664 5699999999999999988778999984 33 5789987 699
Q ss_pred eEEcC
Q 018330 354 TMITG 358 (358)
Q Consensus 354 T~I~~ 358 (358)
|+|.+
T Consensus 310 T~i~~ 314 (314)
T 1e19_A 310 TQVLP 314 (314)
T ss_dssp EEEEC
T ss_pred eEEcC
Confidence 99975
|
| >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=301.60 Aligned_cols=233 Identities=19% Similarity=0.184 Sum_probs=187.2
Q ss_pred HHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCccc
Q 018330 81 LSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRV 160 (358)
Q Consensus 81 l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rv 160 (358)
=.+++|||+.|++ ++||||||+ +++++ +..+.+++++|+.|+ .|+++|||||||++++.+++ ++.+ .|+
T Consensus 28 ~~~~~pyi~~~~~-~iVIKiGGs-l~~~~-~~~l~~l~~~I~~l~-~G~~vVlV~GGg~~~~~~~~-~~~~----~gl-- 96 (276)
T 2ogx_A 28 PVAGKRPIRLLPW-LQVVKIGGR-VMDRG-ADAILPLVEELRKLL-PEHRLLILTGAGVRARHVFS-VGLD----LGL-- 96 (276)
T ss_dssp ---CCCCCCSSTT-EEEEEECHH-HHTTT-HHHHHHHHHHHHHHT-TTCEEEEEECCTHHHHHHHH-HHHH----TTC--
T ss_pred hcccCchhhhcCC-eEEEEEChh-hcCCC-HHHHHHHHHHHHHHh-CCCeEEEEECcHHHHHHHHh-ccCc----CCC--
Confidence 3589999999999 999999999 88743 345689999999998 79999999999999987766 4432 233
Q ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHH-HcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEE
Q 018330 161 TDANTMEIVSMVLVGRVNKSLVSLIN-KAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPV 239 (358)
Q Consensus 161 t~~~~~~~v~~vl~g~ln~~lv~~L~-~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPV 239 (358)
+..+++.+.+. .+++|..+++.|. .+|++++++ ..+.+.|+.+|++|.|||
T Consensus 97 -~~~~l~~v~~~-~~~~n~~l~~~ll~~~g~~~v~~--------------------------~~~~~~i~~lL~~g~IpV 148 (276)
T 2ogx_A 97 -PVGSLAPLAAS-EAGQNGHILAAMLASEGVSYVEH--------------------------PTVADQLAIHLSATRAVV 148 (276)
T ss_dssp -CHHHHHHHHHH-HHHHHHHHHHHHHGGGTCCBCCH--------------------------HHHHHHHHHHHHHSSEEE
T ss_pred -CHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCcccc--------------------------cChHHHHHHHHhCCCEEE
Confidence 34577877776 4788998887766 777754211 126788999999999999
Q ss_pred EcCC-ccC--CC-CC-ccccChHHHHHHHHHHcCCCeEEEeecccccccccc----ccC-cccccccHHHHHHHHhCCCC
Q 018330 240 IASV-AAD--EF-GQ-SYNINADTVAGELAAALGAEKLILLTDVAGILENRE----DPM-SLVKEIDIKGVKKMIEDGKV 309 (358)
Q Consensus 240 i~gv-~~~--~~-G~-~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~----dp~-~lI~~I~~~e~~~l~~~~~v 309 (358)
++|+ +.+ +. |. .+++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.++. .
T Consensus 149 i~~~~~~~~~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~----g 224 (276)
T 2ogx_A 149 GSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSE----G 224 (276)
T ss_dssp EESSCTTGGGCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSC----S
T ss_pred EcCCcccccccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHh----C
Confidence 9993 343 32 33 489999999999999999999999999999999754 233 799999999998885 5
Q ss_pred CCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 310 GGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 310 tGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+|||.+|+.++..+++.|+ +++|+||+.|++| .++|++++.||+|.+
T Consensus 225 ~ggM~~K~~~~~~~~~~~~-~v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 271 (276)
T 2ogx_A 225 PLPVDRALLDVMATARHIE-RVQVVNGLVPGRL-TAALRGEHVGTLIRT 271 (276)
T ss_dssp CCSSCHHHHHHHHTCSSCC-EEEEEETTSTTHH-HHHHTTCCCSEEEEC
T ss_pred cCChHHHHHHHHHHhcCCC-eEEEEECCCccHH-HHHHcCCCCceEEcc
Confidence 7999999988877766676 5999999999998 567788899999963
|
| >2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=295.36 Aligned_cols=233 Identities=16% Similarity=0.180 Sum_probs=184.7
Q ss_pred CeEEEEECCcccCCCC---hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQ---KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~---~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
|++||||||++++ ++ .++.+..++++|+.+++. +++|||||||++ ..+.+++++. .++++.+++..+.
T Consensus 2 k~iViKlGGs~l~-~~~~~~~~~~~~~~~~i~~l~~~-~~vVlVhgGg~~--~~~~~~g~~~-----~~~~~~~~l~~~~ 72 (251)
T 2ako_A 2 KRIVVKVGSHVIS-EENTLSFERLKNLVAFLAKLMEK-YEVILVTSAAIS--AGHTKLDIDR-----KNLINKQVLAAIG 72 (251)
T ss_dssp CEEEEEECHHHHB-CSSSBCHHHHHHHHHHHHHHHHH-SEEEEEECCHHH--HHHHHCCCCS-----SSHHHHHHHHHHH
T ss_pred CEEEEEeCcceeC-CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCHHH--HHHHHhCCcc-----CCchHHHHHHHHH
Confidence 6899999999999 32 145568899999999877 999999999955 5677888875 2555544333332
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCH-HHHHHHHhCCCeEEEcC---CccC
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDP-TVIEPLVNSGHIPVIAS---VAAD 246 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~-~~I~~lL~~G~IPVi~g---v~~~ 246 (358)
...++..+.++|.++|+++..+ ...+ .| +.+++++++. +.|+.+|++|+|||+++ ++.
T Consensus 73 ---q~~l~~~~~~~l~~~G~~~~~i-------~~~~-----~~--~~~~~~~~~~~~~i~~ll~~g~ipVi~~~d~v~~- 134 (251)
T 2ako_A 73 ---QPFLISVYNELLAKFNKLGGQI-------LLTG-----KD--FDSRKATKHAKNAIDMMINLGILPIINENDATAI- 134 (251)
T ss_dssp ---HHHHHHHHHHHHGGGTCCEEEE-------EECT-----GG--GGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCC-
T ss_pred ---HHHHHHHHHHHHHHcCCcEEEE-------Eecc-----ch--hcCcceEehHHHHHHHHHHCCCEEEEeCCCceee-
Confidence 3467888999999999987533 2221 12 4677777776 99999999999999994 433
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHH--HHHHHHh---CCCCCCCcHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIK--GVKKMIE---DGKVGGGMIPKVN 318 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~--e~~~l~~---~~~vtGGM~~Kv~ 318 (358)
++.+++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++ |+.+++. .+.++|||.+|++
T Consensus 135 --~~~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~ 212 (251)
T 2ako_A 135 --EEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLK 212 (251)
T ss_dssp --HHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHH
T ss_pred --cceeecCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHH
Confidence 33478999999999999999999999999999999654 244 799999998 9988876 4578999999999
Q ss_pred HHHHHHHcCCCEEEEEeCCCcchHHHH--HHcCCCCceEEc
Q 018330 319 CCIRSLAQGVRTASIIDGRVEHSLLLE--ILTDAGAGTMIT 357 (358)
Q Consensus 319 aA~~al~~Gv~~v~Ii~G~~~~~Ll~e--l~~~~g~GT~I~ 357 (358)
+|..+++.|++ ++|+||+.|++| .+ +|+++++||+|.
T Consensus 213 aa~~a~~~gv~-v~I~~g~~~~~l-~~~~~~~g~~~GT~i~ 251 (251)
T 2ako_A 213 AAKFLLEHNKK-MFLASGFDLSVA-KTFLLEDKQIGGTLFE 251 (251)
T ss_dssp HHHHHHHTTCE-EEEEESSSCHHH-HHHHHSCCCCSSEEEC
T ss_pred HHHHHHHCCCe-EEEEeCCChhhh-hhhHHhcCCCCceEeC
Confidence 99999999998 999999999998 67 899999999984
|
| >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=303.81 Aligned_cols=242 Identities=20% Similarity=0.307 Sum_probs=166.1
Q ss_pred CCeEEEEECCcccCCCCh---hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQK---DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIV 169 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~---~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v 169 (358)
.+++||||||+++++++. ...+..++++|+.|++.|+++|||||||.+.+ +.+++++. +..+.+.++.+
T Consensus 4 ~k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGgi~~g--~~~lg~~~------~~~~l~~~qa~ 75 (367)
T 2j5v_A 4 SQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAG--REHLGYPE------LPATIASKQLL 75 (367)
T ss_dssp CCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHH--HHHHTSCC------CCSSHHHHHHH
T ss_pred CCEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHH--HHHcCCCC------CCCCHHHHHHH
Confidence 379999999999998531 24558899999999999999999999996644 46777764 23333344444
Q ss_pred HHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCH-HHHHHHHhCCCeEEEcCCccCCC
Q 018330 170 SMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDP-TVIEPLVNSGHIPVIASVAADEF 248 (358)
Q Consensus 170 ~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~-~~I~~lL~~G~IPVi~gv~~~~~ 248 (358)
..+....++..|.+.|+++|+++. +++.... | +.++.++++. +.|+.||++|.|||+++...-..
T Consensus 76 aavGq~~l~~~~~~~l~~~G~~~~-------qvllt~~-----d--~~~~~r~~n~~~~i~~LL~~g~IPIv~end~v~~ 141 (367)
T 2j5v_A 76 AAVGQSRLIQLWEQLFSIYGIHVG-------QMLLTRA-----D--MEDRERFLNARDTLRALLDNNVVPVINENDAVAT 141 (367)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCEE-------EEEECGG-----G--GSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCceE-------EEEEecc-----c--ccCceEEEhHHHHHHHHHHCCCEEEECCCCceec
Confidence 333334578899999999999974 4433331 2 3566677775 89999999999999995322123
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccH--HHHHHHHhC---CCCCCCcHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDI--KGVKKMIED---GKVGGGMIPKVNCC 320 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~--~e~~~l~~~---~~vtGGM~~Kv~aA 320 (358)
++..++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|+++++ +|+++++.. +..+|||.+|+++|
T Consensus 142 ~el~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa 221 (367)
T 2j5v_A 142 AEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAA 221 (367)
T ss_dssp GGGCCCSHHHHHHHHHHHHTCSEEEEEECC------------------------------------------CHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHH
Confidence 45789999999999999999999999999999999754 444 69999999 899998764 46899999999999
Q ss_pred HHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 321 IRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 321 ~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
..+++.|++ ++|+||+.|+.| .++|++++.||+|.+
T Consensus 222 ~~a~~~Gv~-v~I~~g~~~~~L-~~~l~g~~~GT~i~~ 257 (367)
T 2j5v_A 222 DVACRAGID-TIIAAGSKPGVI-GDVMEGISVGTLFHA 257 (367)
T ss_dssp HHHHHTTCE-EEEEETTSTTHH-HHHHHTCCCSEEECC
T ss_pred HHHHHcCCC-EEEEcCCCchHH-HHHhcCCCCcEEEEc
Confidence 999999998 999999999997 789999999999964
|
| >2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-37 Score=281.99 Aligned_cols=215 Identities=18% Similarity=0.251 Sum_probs=174.9
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHH---HHHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW---LKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~---l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
+++||||||+++++++ ++.+..++++|+.+++.|+++|||||||++++.+ ++++++++ .+++.+.
T Consensus 1 ~~iViK~GGs~l~~~~-~~~~~~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~~g~~~-----------~~~~~~~ 68 (226)
T 2j4j_A 1 MNIILKISGKFFDEDN-VDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGE-----------AYLDLLG 68 (226)
T ss_dssp CEEEEEECTHHHHTCC-HHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTTCCH-----------HHHHHHH
T ss_pred CeEEEEeccccccCCC-HHHHHHHHHHHHHHHhCCCeEEEEECcchHhchhHHHHHHhCCCc-----------ccHHHHH
Confidence 4799999999999431 5566899999999988899999999999999885 67777653 3455554
Q ss_pred HHHhhhhHHHHH-HHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCC
Q 018330 171 MVLVGRVNKSLV-SLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFG 249 (358)
Q Consensus 171 ~vl~g~ln~~lv-~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G 249 (358)
+. ...+|..+. ..|+++|+++ . .++.+.++.+|+.|.|||++| |
T Consensus 69 ~~-~~~~~~~l~~~~l~~~g~~~-------------~---------------~~~~~~i~~ll~~g~ipVi~g------g 113 (226)
T 2j4j_A 69 IW-ASRLNAYLVMFSLQDLAYMH-------------V---------------PQSLEEFIQDWSHGKVVVTGG------F 113 (226)
T ss_dssp HH-HHHHHHHHHHHHHTTSBCSC-------------C---------------CSSHHHHHHHHTTSSBEEECC------C
T ss_pred HH-HHHHHHHHHHHHHHHhCCCC-------------C---------------cCCHHHHHHHHHCCCEEEEcC------C
Confidence 43 567888886 4888888743 0 135778999999999999999 2
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhC-CCCCCCc--HHHHHHHHHH
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIED-GKVGGGM--IPKVNCCIRS 323 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~-~~vtGGM--~~Kv~aA~~a 323 (358)
..++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.+++.. +..+||| .+|+++|..+
T Consensus 114 -~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~~a~~~a 192 (226)
T 2j4j_A 114 -QPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIV 192 (226)
T ss_dssp -STTSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC----------CCSCHHHHHHH
T ss_pred -CCCCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchHHHHHHH
Confidence 348999999999999999999999999999999754 344 79999999999999765 6678999 9999999999
Q ss_pred HHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 324 LAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+.|++ ++|+||+.|+.| .++|+++++||+|.+
T Consensus 193 ~~~gi~-v~I~~~~~~~~l-~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 193 ERSKIR-VIVMNYRKLNRI-IDILKGEEVSSIIEP 225 (226)
T ss_dssp HHTTCE-EEEEEGGGGGGH-HHHHTTCSSCEEEEC
T ss_pred HHCCCe-EEEEeCCChhHH-HHHHcCCCCceEEee
Confidence 999998 999999999998 789999999999975
|
| >4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-37 Score=284.31 Aligned_cols=226 Identities=17% Similarity=0.178 Sum_probs=179.0
Q ss_pred cCCeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCC-cccCCHHHH
Q 018330 92 RGKTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDG-LRVTDANTM 166 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g-~rvt~~~~~ 166 (358)
+.|++|||+||++|++++ .++.+++++++|+.++..|+++|||||||+.++.+... ..| ++.+ ..
T Consensus 6 ~~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~~~-------~~G~~~~~---~~ 75 (240)
T 4a7w_A 6 KNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAA-------QGGIIRRT---SG 75 (240)
T ss_dssp CCCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC----------------CCCHH---HH
T ss_pred CCCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhHHH-------hcCCCCCC---CH
Confidence 358999999999999632 25667899999999999999999999999887544321 124 3333 33
Q ss_pred HHHHHHHhhhhHHHHH-HHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCcc
Q 018330 167 EIVSMVLVGRVNKSLV-SLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAA 245 (358)
Q Consensus 167 ~~v~~vl~g~ln~~lv-~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~ 245 (358)
+.+.| +++.+|..++ ++|+++|++++++++.|.... ....+.+.+..+|++|.|||+++.
T Consensus 76 ~~~~~-la~~~n~~l~~~~l~~~G~~av~lt~~d~~~~----------------~~~~~~~~i~~lL~~g~ipVi~~~-- 136 (240)
T 4a7w_A 76 DYMGM-LATVINAVAMQEALEHIGLDTRVQSAIEIKEI----------------CESYIYRKAIRHLEKGRVVIFGAG-- 136 (240)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTTCCEEEEESSCCTTT----------------SEECCHHHHHHHHHTTCEEEEEST--
T ss_pred HHHHH-HHHHHHHHHHHHHHHHCCCCEEEecHHHcCcc----------------cCcCcHHHHHHHHHCCCEEEEeCC--
Confidence 44444 4678899876 899999999999997665321 133578899999999999999982
Q ss_pred CCCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 018330 246 DEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIR 322 (358)
Q Consensus 246 ~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~ 322 (358)
.|.. ++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.+. ..++| |+++|..
T Consensus 137 --~g~~-~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~-----g~~~m--~~~a~~~ 206 (240)
T 4a7w_A 137 --TGNP-FFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG-----DIEVM--DDTAISL 206 (240)
T ss_dssp --TSCT-TSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHHHS-----SCCSS--CHHHHHH
T ss_pred --CCCC-CCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHHhc-----Ccccc--HHHHHHH
Confidence 3443 6899999999999999999999999999999865 455 69999999988764 35788 5789999
Q ss_pred HHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 323 SLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 323 al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.+.|++ +||+||+.|++|+.++++++++||+|.
T Consensus 207 a~~~gv~-v~I~~g~~~~~l~~~l~g~~g~GT~i~ 240 (240)
T 4a7w_A 207 AKDNKLP-IVVCNMFKKGNLLQVIKHQQGVFSMVK 240 (240)
T ss_dssp HHHTTCC-EEEEESSSTTHHHHHHHHSCSSCEEEC
T ss_pred HHHCCCe-EEEECCCCccHHHHHHCCCCCCceeeC
Confidence 9999998 999999999999888888889999984
|
| >4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=290.53 Aligned_cols=260 Identities=18% Similarity=0.252 Sum_probs=186.9
Q ss_pred CeEEEEECCcccCCCChh--HHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKD--NLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSM 171 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~--~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~ 171 (358)
|+|||||||++|.++..+ ++...++++|+.|++.|+++|||||||||++.++.+++....+..+.+......+....+
T Consensus 25 kRIVIklGGnAL~~~~~~q~~~~~~~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~~~~~~~~~~l~~~~a~tq 104 (332)
T 4axs_A 25 SRIVIALGGNALGDNPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAEAGGMSQ 104 (332)
T ss_dssp -CEEEEECGGGGCSSHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTTTTSCCCCCCHHHHHHHHH
T ss_pred ceEEEEEChhhcCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhccccCCCCCchhHHHHHHHH
Confidence 689999999999874322 344678999999999999999999999999887766544433334444444443333332
Q ss_pred HH-hhhhHHHHHHHHHHcCCee--------EeecCCCccEEE-eecC-------------------------CCCCCCCc
Q 018330 172 VL-VGRVNKSLVSLINKAGATA--------VGLSGMDGRLFT-ARPS-------------------------PNSDKLGF 216 (358)
Q Consensus 172 vl-~g~ln~~lv~~L~~~Gi~a--------v~lsg~d~~ll~-a~~~-------------------------~~~~d~g~ 216 (358)
-. ...++..|...|.++|+.. +.++..|..+.. .++. +.+.+..+
T Consensus 105 g~ig~~l~~~l~~~l~~~gi~~~v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~~~~~~~~~~~~~g~rrvV~s 184 (332)
T 4axs_A 105 GYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEANNPNSVIVEDAGRGFRKVVAS 184 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEECCCEEEECTTCHHHHSCCEECSCCCC--------CTTSCCC--------CEECC
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceeeeeeeeeecccchhhhCcCceeccccCHHHHHHHHhcCCEEEEccCCCceEECCC
Confidence 21 1234566777788887642 333333311110 0000 00112234
Q ss_pred ccceeecCHHHHHHHHhCCCeEEEcCC--------ccCCCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccccc
Q 018330 217 VGEVARVDPTVIEPLVNSGHIPVIASV--------AADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDP 288 (358)
Q Consensus 217 ~g~v~~i~~~~I~~lL~~G~IPVi~gv--------~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp 288 (358)
.+.+..++.+.|..|+++|+|||.++. ..+..|..+|+|+|++|+.+|..|+||+|||||||||||+++++|
T Consensus 185 p~p~~ive~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~~ 264 (332)
T 4axs_A 185 PIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNKP 264 (332)
T ss_dssp CCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTST
T ss_pred CCCceeecHHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEEEEecCCceEcCCCCc
Confidence 455567899999999999999887641 123357889999999999999999999999999999999988777
Q ss_pred C-cccccccHHHHHHHHhCCCC-CCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 289 M-SLVKEIDIKGVKKMIEDGKV-GGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 289 ~-~lI~~I~~~e~~~l~~~~~v-tGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+ ++|++++.+|+++++..+.+ +|||.||+++|+++++.|+.+++|+. + ++.+ .+++.|+ .||+|.
T Consensus 265 ~~~~i~~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~-~-~~~~-~~~l~g~-~GT~Iv 331 (332)
T 4axs_A 265 TQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIA-D-LSKV-EDALKGL-SGTKII 331 (332)
T ss_dssp TCEECSSCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEE-C-STTH-HHHTTTS-SSEEEB
T ss_pred chhhcccCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEEC-C-HHHH-HHHHCCC-CCcEEe
Confidence 7 58999999999999988765 69999999999999999887777774 2 3344 6777764 899995
|
| >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-37 Score=288.13 Aligned_cols=238 Identities=16% Similarity=0.186 Sum_probs=185.8
Q ss_pred HHHHHhhhHHHHh--hcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCcccc
Q 018330 78 VDILSESLPFIQK--FRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFR 155 (358)
Q Consensus 78 ~~~l~~a~pyi~~--~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~ 155 (358)
-..|.+++||+++ ++.+++|||+||+++++++ ++.+.+++++|+.+++. +++|||||||++++. +.++++..
T Consensus 19 ~~~~~~~~~~~~~~~~m~~~iVIKlGGs~l~~~~-~~~~~~la~~I~~l~~~-~~vVlVhGGg~~~~~-~~~~~~~~--- 92 (270)
T 2ogx_B 19 DPQLQAAAAAAADFRILPDATVIKIGGQSVIDRG-RAAVYPLVDEIVAARKN-HKLLIGTGAGTRARH-LYSIAAGL--- 92 (270)
T ss_dssp CHHHHHHHHTSCCCCSSTTEEEEEECTTTTGGGC-HHHHHHHHHHHHHHTTT-CEEEEEECCCHHHHH-HHHHHHHT---
T ss_pred chhhhhhhcccchhhhccCeEEEEechHHhCCCC-HHHHHHHHHHHHHHhcC-CcEEEEECChHHHHH-HHHHHHhc---
Confidence 4568999999977 5556999999999999843 34568899999999876 999999999997644 33433321
Q ss_pred CCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCC
Q 018330 156 DGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSG 235 (358)
Q Consensus 156 ~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G 235 (358)
|+ +...++...+..+|+.+..+.++|+++|++. ++..+.+.++.+|++|
T Consensus 93 -g~---~~~~~~~~~~~a~G~~~l~~~~~l~~~G~~~---------------------------vt~~d~~~i~~lL~~g 141 (270)
T 2ogx_B 93 -GL---PAGVLAQLGSSVADQNAAMLGQLLAKHGIPV---------------------------VGGAGLSAVPLSLAEV 141 (270)
T ss_dssp -TC---CHHHHHHHHHHHHHHHHHHHHHHHGGGTCCB---------------------------CCSSTTCHHHHHCTTC
T ss_pred -CC---ChHHHHHHHHHHHHHHHHHHHHHHHhcCCce---------------------------ecHhhHHHHHHHHhCC
Confidence 22 3444555555556766666777788888762 1122344699999999
Q ss_pred CeEEEcCC-ccC--C----CCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHh
Q 018330 236 HIPVIASV-AAD--E----FGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIE 305 (358)
Q Consensus 236 ~IPVi~gv-~~~--~----~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~ 305 (358)
.|||++|+ +++ + .|...++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.++..
T Consensus 142 ~ipVi~g~~g~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~ 221 (270)
T 2ogx_B 142 NAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGL 221 (270)
T ss_dssp CEEEEECSCTTGGGCCCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTC
T ss_pred CEEEEeCCccccccccccccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhc
Confidence 99999985 332 2 355677999999999999999999999999999999754 344 6999999999999876
Q ss_pred CC-CCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 306 DG-KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 306 ~~-~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+ .+.|||.+|+++|. .++ +++|+||+.|++| .++|+++++||+|.+
T Consensus 222 ~g~~~~ggm~~kl~aa~----~~~-~v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 222 HDSILEFPVLDLLQSAQ----HVR-EVQVVNGLVPGNL-TRALAGEHVGTIITA 269 (270)
T ss_dssp CCTTSCHHHHHHHHHCS----SCC-EEEEEETTSTTHH-HHHHTTCCCSEEEEC
T ss_pred CCCcccHHHHHHHHHhh----cCC-cEEEEeCCCchHH-HHHHcCCCCCeEecC
Confidence 54 56799999999875 345 5999999999998 789999999999964
|
| >2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-36 Score=272.87 Aligned_cols=212 Identities=16% Similarity=0.218 Sum_probs=171.2
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhH---HHHHcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINF---WLKRFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~---~l~~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
+++||||||++++++ +..+.+++++|+.+++ |+++|||||||++++. +++++|++ +.+++.+.
T Consensus 1 ~~iViK~GGs~l~~~--~~~~~~~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~~g~~-----------~~~l~~~~ 66 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNE--SEKIREFAKTIESVAQ-QNQVFVVVGGGKLAREYIKSARELGAS-----------ETFCDYIG 66 (219)
T ss_dssp CEEEEEECSSTTTTC--HHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHHTTCC-----------HHHHHHHH
T ss_pred CeEEEEeChhhhCCh--HHHHHHHHHHHHHHcC-CCEEEEEECcchHhcchHHHHHHcCCC-----------ccchHHHH
Confidence 579999999999984 3455789999999988 9999999999999998 56777764 34566666
Q ss_pred HHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCC
Q 018330 171 MVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQ 250 (358)
Q Consensus 171 ~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~ 250 (358)
++ .+.+|..+++.+.++++ .+ ..++.+.++.+|++|.|||++| |.
T Consensus 67 ~~-~~~~~~~l~~~~~~~~~---------~~-------------------~~~~~~~i~~ll~~g~ipVi~~------g~ 111 (219)
T 2ij9_A 67 IA-ATRLNAMLLISAIPSAA---------KK-------------------VPVDFMEAEELSKLYRVVVMGG------TF 111 (219)
T ss_dssp HH-HHHHHHHHHHHHCTTBC---------SS-------------------CCSSHHHHHHHHTTCSEEEECC------CS
T ss_pred HH-HHHHHHHHHHHHHHHhc---------CC-------------------CcCCHHHHHHHHHCCCEEEEeC------CC
Confidence 65 66788887765544331 00 1246788999999999999999 45
Q ss_pred ccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhC-CCCCCCcHHHHHHHHHHHHc
Q 018330 251 SYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIED-GKVGGGMIPKVNCCIRSLAQ 326 (358)
Q Consensus 251 ~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~-~~vtGGM~~Kv~aA~~al~~ 326 (358)
.++ |+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.+++.. +..+|||.+|..+|.++++.
T Consensus 112 ~~~-~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~~~a~~~~~~ 190 (219)
T 2ij9_A 112 PGH-TTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIER 190 (219)
T ss_dssp SSS-CTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHH
T ss_pred CCC-CchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchHHHHHHHHHH
Confidence 566 99999999999999999999999999999754 344 79999999999999776 56689988888888888876
Q ss_pred CCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 327 GVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 327 Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+..+++|+|| .|+.| .++|+++++||+|.
T Consensus 191 ~~~~v~I~~g-~~~~l-~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 191 SKIKTYVILG-TPENI-MKAVKGEAVGTVIA 219 (219)
T ss_dssp HTCCEEEEEC-CHHHH-HHHHTTCCCSEEEC
T ss_pred CCCeEEEEEC-CHhHH-HHHHcCCCCCeEeC
Confidence 5555999999 99998 68999999999985
|
| >2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=280.73 Aligned_cols=216 Identities=19% Similarity=0.263 Sum_probs=172.3
Q ss_pred CeEEEEECCcccCCCC-hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhH---HHHHcCCCccccCCcccCCHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQ-KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINF---WLKRFGIEPVFRDGLRVTDANTMEIV 169 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~-~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~---~l~~~gi~~~~~~g~rvt~~~~~~~v 169 (358)
|++||||||+++++++ .++.+..++++|+.+++ |+++|||||||++++. ++++++++ ..+++.+
T Consensus 20 k~iViKlGGs~l~~~~~~~~~i~~~~~~i~~l~~-g~~vViV~GgG~~~~~~~~~~~~~gl~-----------~~~~~~~ 87 (244)
T 2brx_A 20 MRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSS-----------ETFKDFI 87 (244)
T ss_dssp CEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTCC-----------HHHHHHH
T ss_pred cEEEEEechhhcCCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECccHHHhchHHHHHHcCCC-----------cccHHHH
Confidence 7999999999999531 04556889999999988 9999999999999988 45665553 3456666
Q ss_pred HHHHhhhhHHHHHH-HHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCC
Q 018330 170 SMVLVGRVNKSLVS-LINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEF 248 (358)
Q Consensus 170 ~~vl~g~ln~~lv~-~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~ 248 (358)
.++ ...+|..+++ .|.++|++. ..++.+.+..+|++|.|||++|
T Consensus 88 ~~~-~~~~~~~l~~~~l~~~g~~~----------------------------~~~~~~~i~~lL~~g~IpVi~g------ 132 (244)
T 2brx_A 88 GIQ-ITRANAMLLIAALREKAYPV----------------------------VVEDFWEAWKAVQLKKIPVMGG------ 132 (244)
T ss_dssp HHH-HHHHHHHHHHHHHGGGBCSS----------------------------CBCSHHHHHHHHHTTCBCEECC------
T ss_pred HHH-HHHHHHHHHHHHHHHcCCCC----------------------------CcCCHHHHHHHHhCCCEEEEcC------
Confidence 665 5678888764 888888542 1236778899999999999999
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhC-CCCCCCcHHHHHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIED-GKVGGGMIPKVNCCIRSL 324 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~-~~vtGGM~~Kv~aA~~al 324 (358)
|..++ |+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++|+++|+.+++.. +..+|||.+|..+|.+++
T Consensus 133 g~~~~-~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~A~~~~ 211 (244)
T 2brx_A 133 THPGH-TTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKII 211 (244)
T ss_dssp CSTTC-CHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHH
T ss_pred CCCCC-CchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHHHHHHH
Confidence 44455 99999999999999999999999999999743 244 69999999999999776 567899999999999888
Q ss_pred HcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 325 AQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 325 ~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+.+..+++|+||+.|+.| .++|+++++||+|.+
T Consensus 212 ~~~~~~v~I~ng~~~~~l-~~~l~g~~~GT~i~~ 244 (244)
T 2brx_A 212 ARSGIKTIVIGKEDAKDL-FRVIKGDHNGTTIEP 244 (244)
T ss_dssp HHHTCCEEEECHHHHTCH-HHHHTTCSSSEEECC
T ss_pred HHCCCeEEEEeCCChhHH-HHHHcCCCCceEecC
Confidence 865555999999999998 789999999999975
|
| >3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=267.93 Aligned_cols=225 Identities=20% Similarity=0.224 Sum_probs=177.8
Q ss_pred cCCeEEEEECCcccCCCCh----hHHHHHHHHHHHHhHhCCCeEEEEECChHHH-hHHHHHcCCCccccCCcccCCHHHH
Q 018330 92 RGKTIVVKYGGAAMKPNQK----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEI-NFWLKRFGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i-~~~l~~~gi~~~~~~g~rvt~~~~~ 166 (358)
+.+++|||+||++|++++. +..+++++++|+.++..|+++|||||||+.. +..+.++|++. ...
T Consensus 8 ~~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~~~~g~~~-----------~~~ 76 (243)
T 3ek6_A 8 SYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDR-----------VTG 76 (243)
T ss_dssp SCSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTTSCSSSCH-----------HHH
T ss_pred cCcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCCCC-----------CCH
Confidence 3589999999999998641 3566899999999999999999999998743 33333444432 112
Q ss_pred HHHHHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCcc
Q 018330 167 EIVSMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAA 245 (358)
Q Consensus 167 ~~v~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~ 245 (358)
+.+.|. ..++|.. +.++|+++|++++++++.+...+ ...++.+.+..+|++|.|||++|.
T Consensus 77 d~~g~l-~t~~N~~~l~~al~~~G~~a~~~~~~~~~~v----------------~~~~~~~~~~~lL~~g~IpVv~~~-- 137 (243)
T 3ek6_A 77 DHMGML-ATVINALAMQDALEKLGAKVRVMSAIKINDV----------------CEDFIRRRAIRHLEKGRIAIFAAG-- 137 (243)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHTTCCEEEEESSCBTTT----------------BEECCHHHHHHHHHTTCEEEEEST--
T ss_pred HHHHHH-HHHHHHHHHHHHHHHcCCCeEEechhhcCcc----------------cCcCCHHHHHHHHHCCcEEEEECC--
Confidence 223333 5689987 88899999999999997653211 023467889999999999999992
Q ss_pred CCCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 018330 246 DEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIR 322 (358)
Q Consensus 246 ~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~ 322 (358)
.|. .++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.+. + .+.| |+.+|..
T Consensus 138 --~g~-~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g--~~~~--~~~a~~~ 207 (243)
T 3ek6_A 138 --TGN-PFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQ---G--LEVM--DTAAFAL 207 (243)
T ss_dssp --TSS-TTCCHHHHHHHHHHHHTCSEEEEECSSSSCBSSCGGGCTTCCBCSEECHHHHHHH---T--CCSS--CHHHHHH
T ss_pred --CCC-CcCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceecccccHHHHHhC---C--chhH--HHHHHHH
Confidence 343 35899999999999999999999999999999865 354 69999999987663 2 2455 6789999
Q ss_pred HHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 323 SLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 323 al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+.+.|++ ++|+||+.|++| .++|+|+++||+|.+
T Consensus 208 a~~~gv~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 208 ARDSDLP-LRIFGMSEPGVL-LRILHGAQIGTLVQG 241 (243)
T ss_dssp HHHTTCC-EEEECCCSTTHH-HHHHTTCCCSEEECC
T ss_pred HHHCCCe-EEEEcCCCccHH-HHHHCCCCCceEEee
Confidence 9999998 999999999997 589999999999975
|
| >1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=267.20 Aligned_cols=224 Identities=17% Similarity=0.192 Sum_probs=178.7
Q ss_pred CCeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHH-HHHcCCCccccCCcccCCHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW-LKRFGIEPVFRDGLRVTDANTME 167 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~-l~~~gi~~~~~~g~rvt~~~~~~ 167 (358)
.+++||||||+++++++ .++.+..++++|+.++..|+++|||||||+++... ++++|+++.+ .+.+
T Consensus 7 ~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~~~~lg~~~~~--------~~~~- 77 (252)
T 1z9d_A 7 YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQ--------ADYT- 77 (252)
T ss_dssp CSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHH--------HHHH-
T ss_pred CCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccchHHHcCCCCCc--------hHHH-
Confidence 47999999999999632 13456889999999999999999999999876554 6777876521 1122
Q ss_pred HHHHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccC
Q 018330 168 IVSMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAAD 246 (358)
Q Consensus 168 ~v~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~ 246 (358)
+++.+.+|.. ++++|.++|++++++++.+...+. | ..++.+. ..+|+.|.|||++|.
T Consensus 78 ---~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~~--------~-------~~~~~~~-~~lL~~g~IpVi~~~--- 135 (252)
T 1z9d_A 78 ---GMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVA--------E-------PYIRGRA-LRHLEKNRIVVFGAG--- 135 (252)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTTB--------E-------ECCHHHH-HHHHHTTCEEEEEST---
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCCeEEEecccccccc--------C-------cchHHHH-HHHHhCCCEEEEeCC---
Confidence 2345678887 888999999999999875442110 0 1234444 899999999999982
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEee-cccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILLT-DVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIR 322 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lT-DV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~ 322 (358)
.| ..++|+|++|+++|.+|+||+|+|+| ||||||+++| +|+ ++|++|+++|+.+. ..++| |+++|..
T Consensus 136 -~g-~~~~~~D~~Aa~lA~~l~Ad~LiilT~DVdGvy~~dP~~~~~a~~i~~i~~~e~~~~-----~~~~m--k~~aa~~ 206 (252)
T 1z9d_A 136 -IG-SPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKR-----GLKIM--DATASTL 206 (252)
T ss_dssp -TS-CTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHTT-----TCCCS--CHHHHHH
T ss_pred -cC-CCCCChHHHHHHHHHhcCCCEEEEecCCCCeeeCCCCCCCCCCeEeeEecHHHHHhc-----ccccc--CHHHHHH
Confidence 23 35899999999999999999999999 9999999854 344 79999999988763 23788 8889999
Q ss_pred HHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 323 SLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 323 al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+.+.|++ ++|+||+.|+.| .++|+++++||+|.+
T Consensus 207 a~~~gv~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 240 (252)
T 1z9d_A 207 SMDNDID-LVVFNMNEAGNI-QRVVFGEHIGTTVSN 240 (252)
T ss_dssp HHHTTCE-EEEEETTSTTHH-HHHHTTCCCSEEEEC
T ss_pred HHHcCCe-EEEEeCCCchHH-HHHHcCCCCceEEec
Confidence 9999998 999999999997 789999999999964
|
| >1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-34 Score=262.45 Aligned_cols=224 Identities=17% Similarity=0.230 Sum_probs=177.7
Q ss_pred CCeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHH-HHHcCCCccccCCcccCCHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW-LKRFGIEPVFRDGLRVTDANTME 167 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~-l~~~gi~~~~~~g~rvt~~~~~~ 167 (358)
.+++||||||+++++++ ..+.+.+++++|+.+++.|+++|||||||+++... +++++++.. +.+
T Consensus 7 ~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~GgG~~~~g~~~~~~~~~~~-----------~~~ 75 (239)
T 1ybd_A 7 YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRA-----------TAD 75 (239)
T ss_dssp CSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTSCHH-----------HHH
T ss_pred CCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhchhHHHcCCCCc-----------cHH
Confidence 47999999999999742 13456789999999999999999999999987766 577777642 122
Q ss_pred HHHHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccC
Q 018330 168 IVSMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAAD 246 (358)
Q Consensus 168 ~v~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~ 246 (358)
.+.+ +...+|.. +.++|.++|+++.++++.+...+. .+ .++.+.+ .+|+.|.|||+++.
T Consensus 76 ~~~~-~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~-------~~--------~~~~~~~-~ll~~g~ipVv~g~--- 135 (239)
T 1ybd_A 76 YMGM-MATVMNALALKDAFETLGIKARVQSALSMQQIA-------ET--------YARPKAI-QYLEEGKVVIFAAG--- 135 (239)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSC-------EE--------CCHHHHH-HHHHTTCEEEEEST---
T ss_pred HHHH-HHHHHHHHHHHHHHHHcCCCeEEEeeecccccc-------cc--------hhHHHHH-HHHhCCcEEEEECC---
Confidence 2333 24567887 588999999999999876542210 01 2345666 78999999999952
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
.| ..++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.++ ..++| |+++|..+
T Consensus 136 -~g-~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~-----g~~~m--~~~a~~~a 206 (239)
T 1ybd_A 136 -TG-NPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK-----NLKVM--DATAFALC 206 (239)
T ss_dssp -TS-STTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT-----TCCSS--CHHHHHHH
T ss_pred -cc-CCCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh-----ccccc--CHHHHHHH
Confidence 33 346899999999999999999999999999999754 355 59999999998875 23788 66788999
Q ss_pred HHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 324 LAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.+.|++ ++|+||+.|+.| .++|+++++||+|.+
T Consensus 207 ~~~gv~-v~I~~~~~~~~l-~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 207 RERKLN-IVVFGIAKEGSL-KRVITGEDEGTLVHC 239 (239)
T ss_dssp HHTTCC-EEEECTTSTTHH-HHHHHTCSCSEEEEC
T ss_pred HHcCCc-EEEEeCCChhHH-HHHHcCCCCCeEEcC
Confidence 999999 999999999997 589999999999975
|
| >2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=268.32 Aligned_cols=230 Identities=15% Similarity=0.200 Sum_probs=175.9
Q ss_pred hHHHHhhc-CCeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHH-HHHcCCCccccCCc
Q 018330 85 LPFIQKFR-GKTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW-LKRFGIEPVFRDGL 158 (358)
Q Consensus 85 ~pyi~~~~-~k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~-l~~~gi~~~~~~g~ 158 (358)
.||...++ .|++||||||+++++++ .++.+..++++|+.|+ .|+++|||||||+++... ++++++++..
T Consensus 15 ~~~~~~~~~~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~-~g~~vVlVhGgG~~~~~~~~~~~g~~~~~---- 89 (256)
T 2va1_A 15 VPRGSHMMRKQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKIS-KKYIVSIVLGGGNIWRGSIAKELDMDRNL---- 89 (256)
T ss_dssp --------CCSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHT-TTSEEEEEECCTTTCCHHHHHHTTCCHHH----
T ss_pred cchhhhhhhcCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEECCcHHhccchHHHcCCCCCc----
Confidence 34544443 47999999999999752 1345688999999998 899999999999998765 7788876521
Q ss_pred ccCCHHHHHHHHHHHhhhhHHHH-HHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCe
Q 018330 159 RVTDANTMEIVSMVLVGRVNKSL-VSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHI 237 (358)
Q Consensus 159 rvt~~~~~~~v~~vl~g~ln~~l-v~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~I 237 (358)
...+ +++.+.+|..+ +++|.++|++++++++.+.. ++. . ..++.+. ..+|+.|.|
T Consensus 90 ----~~~~----~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~~-----------~~~---~-~~~~~~~-~~lL~~g~I 145 (256)
T 2va1_A 90 ----ADNM----GMMATIINGLALENALNHLNVNTIVLSAIKCD-----------KLV---H-ESSANNI-KKAIEKEQV 145 (256)
T ss_dssp ----HHHH----HHHHHHHHHHHHHHHHHTTTCCEEEEESSCCT-----------TTC---E-ECCHHHH-HHHHHTTCE
T ss_pred ----hhHH----HHHHHHHHHHHHHHHHHHcCCCeEEEeeeecc-----------ccc---c-hhhHHHH-HHHHhCCcE
Confidence 1112 34456788877 89999999999888865321 111 0 1234555 789999999
Q ss_pred EEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeec-ccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCc
Q 018330 238 PVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTD-VAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGM 313 (358)
Q Consensus 238 PVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTD-V~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM 313 (358)
||++| .+|. .++|+|++|+++|.+|+||+|+|+|| |||||+++| +|+ ++|++|+++|+.++ + .|+|
T Consensus 146 pVi~~----~~g~-~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~---~--~~~m 215 (256)
T 2va1_A 146 MIFVA----GTGF-PYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---N--LKVM 215 (256)
T ss_dssp EEEES----TTSS-SSCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHHHH---T--CCSS
T ss_pred EEEEC----CCCC-CCCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHHHh---c--cCCc
Confidence 99999 2343 35789999999999999999999999 999999754 344 69999999999887 2 3889
Q ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 314 IPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 314 ~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
|+++|..+.+.|++ ++|+||+.|++| .++|+++++||+|.
T Consensus 216 --k~~aa~~a~~~gv~-v~I~~g~~~~~l-~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 216 --DATALALCQENNIN-LLVFNIDKPNAI-VDVLEKKNKYTIVS 255 (256)
T ss_dssp --CHHHHHHHHHTTCE-EEEEESSSTTHH-HHHHTTCSCEEEEE
T ss_pred --cHHHHHHHHHCCCe-EEEEeCCCchHH-HHHHcCCCCeEEEe
Confidence 99999999999998 999999999998 58999999999996
|
| >2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=262.42 Aligned_cols=223 Identities=17% Similarity=0.189 Sum_probs=174.6
Q ss_pred CCeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHH-HHHcCCCccccCCcccCCHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW-LKRFGIEPVFRDGLRVTDANTME 167 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~-l~~~gi~~~~~~g~rvt~~~~~~ 167 (358)
.+++||||||+++++++ .++.+.+++++|+.+++.|+++|||||||+++... +.+++++.. ..+
T Consensus 8 ~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~~g~~~~-----------~~d 76 (247)
T 2a1f_A 8 YKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRV-----------VGD 76 (247)
T ss_dssp CSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHH-----------HHH
T ss_pred ccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHHcCCCCC-----------cHH
Confidence 47999999999999631 13456889999999998999999999999887555 677777642 122
Q ss_pred HHHHHHhhhhHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccC
Q 018330 168 IVSMVLVGRVNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAAD 246 (358)
Q Consensus 168 ~v~~vl~g~ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~ 246 (358)
.+. ++.+.+|.. ++++|.++|+++.++++.+...+ +. ..++.+ +..+|+.|.|||++|.
T Consensus 77 ~~~-~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~~---------~~------~~~~~~-~~~ll~~g~ipVi~~~--- 136 (247)
T 2a1f_A 77 HMG-MLATVMNGLAMRDSLFRADVNAKLMSAFQLNGI---------CD------TYNWSE-AIKMLREKRVVIFSAG--- 136 (247)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTT---------SE------ECCHHH-HHHHHHTTCEEEEEST---
T ss_pred HHH-HHHHHHHHHHHHHHHHHcCCCeEEecccccccc---------cc------hhhHHH-HHHHHhCCCEEEEeCC---
Confidence 222 335678887 78899999999999987654211 00 123344 4789999999999982
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
.|. .++|+|++|+.+|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.++ ..++| |+++|..+
T Consensus 137 -~g~-~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~dP~~~p~a~~i~~i~~~e~~~~-----g~~~m--~~~aa~~a 207 (247)
T 2a1f_A 137 -TGN-PFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK-----ELKVM--DLSAFTLA 207 (247)
T ss_dssp -TSC-SSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHHT-----TCCSS--CHHHHHHH
T ss_pred -cCC-CCCCcHHHHHHHHHhCCCCEEEEEeCCCcccCCCCCCCCCCeEcccCCHHHHHHc-----Ccccc--CHHHHHHH
Confidence 233 46899999999999999999999999999999754 344 79999999998875 23778 66788899
Q ss_pred HHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 324 LAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+.|++ ++|+||+.|+.| .++++|+.+||+|.
T Consensus 208 ~~~gv~-v~I~~~~~~~~l-~~~l~g~~~GT~~~ 239 (247)
T 2a1f_A 208 RDHGMP-IRVFNMGKPGAL-RQVVTGTEEGTTIC 239 (247)
T ss_dssp HHHTCC-EEEEETTSTTHH-HHHHTCSCSSEEEC
T ss_pred HHcCCc-EEEEeCCCchHH-HHHHcCCCCceEEe
Confidence 999999 999999999997 67889999999985
|
| >3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=273.14 Aligned_cols=256 Identities=20% Similarity=0.285 Sum_probs=175.0
Q ss_pred cCCeEEEEECCcccCCC----Chh-H--HHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHH
Q 018330 92 RGKTIVVKYGGAAMKPN----QKD-N--LLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDAN 164 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k----~~~-~--l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~ 164 (358)
++|++||+|||++|..+ ..+ + .....++.|+.|.+.|+++||+||+|||++.++........ ......-+
T Consensus 4 ~~~~ivvalgGnal~~~g~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~~---~~~~~pld 80 (317)
T 3kzf_A 4 AGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAG---VSPEMPLH 80 (317)
T ss_dssp CCCEEEEECCSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTTS---SSCCCCHH
T ss_pred CCCEEEEEcChhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccc---cCCCCCcc
Confidence 45899999999999542 111 2 23567888999888999999999999999876654332210 00111222
Q ss_pred HHHHHHHHHhhh-hHHHHHHHHHHcCCe--eEeecCCCccEEEe----------ecCC-------------C------CC
Q 018330 165 TMEIVSMVLVGR-VNKSLVSLINKAGAT--AVGLSGMDGRLFTA----------RPSP-------------N------SD 212 (358)
Q Consensus 165 ~~~~v~~vl~g~-ln~~lv~~L~~~Gi~--av~lsg~d~~ll~a----------~~~~-------------~------~~ 212 (358)
.+...+|-+.|. +...|...|.+.|+. +..+- .+.++. +|.+ . .+
T Consensus 81 ~~~A~sqG~igy~l~~al~~~l~~~g~~~~v~t~i---tq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~~~~~e 157 (317)
T 3kzf_A 81 VCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCV---TQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILRE 157 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBC---CEEEECTTCGGGTSCCEECC----------------------
T ss_pred ccCchhhHHHHHHHHHHHHHHHHhcCCCCceeEEE---EEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccCCeEee
Confidence 233333333333 224566777777764 11111 111110 0000 0 00
Q ss_pred C--CCcc------cceeecCHHHHHHHHhCCCeEEEc-----CCccC---CCCCccccChHHHHHHHHHHcCCCeEEEee
Q 018330 213 K--LGFV------GEVARVDPTVIEPLVNSGHIPVIA-----SVAAD---EFGQSYNINADTVAGELAAALGAEKLILLT 276 (358)
Q Consensus 213 d--~g~~------g~v~~i~~~~I~~lL~~G~IPVi~-----gv~~~---~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lT 276 (358)
| .+|. -.++.++.+.|+.||++|+|||++ |+..+ .+|..+|+|+|++|+.+|.+|+||+|+|+|
T Consensus 158 d~grg~RrvV~sP~P~~iVe~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLT 237 (317)
T 3kzf_A 158 DAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILT 237 (317)
T ss_dssp ----CCCCEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECC
T ss_pred cCCCCeeeecCCCCCcceECHHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEec
Confidence 0 0110 113468999999999999998887 44332 346778999999999999999999999999
Q ss_pred ccccccccccccC-cccccccHHHHHHHHhCCC-CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCce
Q 018330 277 DVAGILENREDPM-SLVKEIDIKGVKKMIEDGK-VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGT 354 (358)
Q Consensus 277 DV~GV~~~~~dp~-~lI~~I~~~e~~~l~~~~~-vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT 354 (358)
||||||+++.+|+ ++|++++.+|+++++..+. .+|||.+|+++|+++++.|+.++||++++ . +.++|+|+ .||
T Consensus 238 DVdGVy~dp~~p~a~~I~~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~~---~-l~~~l~G~-~GT 312 (317)
T 3kzf_A 238 DVLNACINYKKPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLS---T-AVDALNGK-CGT 312 (317)
T ss_dssp SSSSCEESSSCSSCEECCEEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCGG---G-HHHHHTTS-SSE
T ss_pred CCCeeeCCCCCCCCeECcCcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcchH---H-HHHHHCCC-CCe
Confidence 9999999766776 6999999999999987665 46999999999999999888889999963 3 46788887 899
Q ss_pred EEcC
Q 018330 355 MITG 358 (358)
Q Consensus 355 ~I~~ 358 (358)
+|.+
T Consensus 313 ~I~~ 316 (317)
T 3kzf_A 313 RIIK 316 (317)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9974
|
| >2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=258.25 Aligned_cols=224 Identities=15% Similarity=0.225 Sum_probs=173.6
Q ss_pred cCCeEEEEECCcccCCCC----hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHH-HHHcCCCccccCCcccCCHHHH
Q 018330 92 RGKTIVVKYGGAAMKPNQ----KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFW-LKRFGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~----~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~-l~~~gi~~~~~~g~rvt~~~~~ 166 (358)
+++++||||||+++++++ .++.+.+++++|+.+++.|+++|||||||+++... +++++++.. +.+.+
T Consensus 11 ~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~~~~~~~~~g~~~~--------~~~~~ 82 (255)
T 2jjx_A 11 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRV--------EADNI 82 (255)
T ss_dssp BCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHTTCCHH--------HHHHH
T ss_pred cCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHHhhhHHHHcCCCCC--------ChHHH
Confidence 468999999999999741 13455889999999988999999999999987544 677777631 11223
Q ss_pred HHHHHHHhhhhHHH-HHHHHHH-cCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCc
Q 018330 167 EIVSMVLVGRVNKS-LVSLINK-AGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVA 244 (358)
Q Consensus 167 ~~v~~vl~g~ln~~-lv~~L~~-~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~ 244 (358)
+ ++...+|.. +++.|++ +|+++.++++.+...+ .+ .++...+..+|+.|.|||++| +
T Consensus 83 ~----~~~~~~~~~ll~~~l~~~~Gi~a~~l~~~~~~~v--------------~~--~~~~~~~~~lL~~g~IpVi~g-g 141 (255)
T 2jjx_A 83 G----TLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAV--------------AE--PYIRLRAVHHLDNGYIVIFGG-G 141 (255)
T ss_dssp H----HHHHHHHHHHHHHHHHHHCSSCEEEEESSCCCSS--------------SE--ECCHHHHHHHHHTTCEEEEES-T
T ss_pred h----HHHHHHHHHHHHHHHHhhcCCceEEecHHHcCcc--------------cC--cccHHHHHHHHhCCcEEEEeC-C
Confidence 2 234578887 7889999 9999998887554321 11 234444558999999999998 2
Q ss_pred cCCCCCccccChHHHHHHHHHHcCCCeEEEee-cccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHH
Q 018330 245 ADEFGQSYNINADTVAGELAAALGAEKLILLT-DVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCC 320 (358)
Q Consensus 245 ~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lT-DV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA 320 (358)
+|.. ++++|++|+.+|.+|+||+|+|+| ||||||+++| +|+ ++|++|+++|+.++ .+|+|.+ +|
T Consensus 142 ---~g~~-~vttD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~-----G~~~m~~---~a 209 (255)
T 2jjx_A 142 ---NGQP-FVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ-----NIQVMDQ---AA 209 (255)
T ss_dssp ---TSCS-SCCSHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT-----TCCSSCH---HH
T ss_pred ---CCCC-ccchHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc-----CCccCHH---HH
Confidence 3443 578999999999999999999999 9999999854 344 79999999888875 3488975 35
Q ss_pred HHHHH-cCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 321 IRSLA-QGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 321 ~~al~-~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.++++ .|++ ++|+||+.|++| .++|++++.||+|.+
T Consensus 210 ~~~a~~~gi~-v~I~~~~~~~~l-~~~l~g~~~GT~I~~ 246 (255)
T 2jjx_A 210 LLLARDYNLP-AHVFNFDEPGVM-RRICLGEHVGTLIND 246 (255)
T ss_dssp HHHHHHHTCC-EEEEETTSTTHH-HHHHBTCCCSEEEES
T ss_pred HHHHHHcCCe-EEEEeCCCchHH-HHHhcCCCCceEEec
Confidence 55554 7998 999999999997 567799899999964
|
| >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=265.61 Aligned_cols=223 Identities=17% Similarity=0.289 Sum_probs=171.2
Q ss_pred CCeEEEEECCcccCCCC---hhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHH-HHcCCCccccCCcccCCHHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQ---KDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWL-KRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~---~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l-~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
.|++|||+||++|++++ .+..+.+++++|+.+++.|+++|||||||..+..+. ..+|+ +.+....+.
T Consensus 50 ~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~~~gl--------~~~~~d~~g- 120 (281)
T 3nwy_A 50 YSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGM--------ERTRSDYMG- 120 (281)
T ss_dssp CSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTTTTTC--------CHHHHHHHH-
T ss_pred CcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHHhcCC--------CccchhHHH-
Confidence 48999999999999754 245668899999999999999999999887654321 11222 222222233
Q ss_pred HHHHHhhhhHH-HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCC
Q 018330 169 VSMVLVGRVNK-SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247 (358)
Q Consensus 169 v~~vl~g~ln~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~ 247 (358)
+ +...+|. .|.++|+++|++++++++.+.+.+. + ..++.+.+ .+|++|.|||+++.
T Consensus 121 --~-lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~~~~-~--------------~~~~~~~l-~lL~~g~IpVv~g~---- 177 (281)
T 3nwy_A 121 --M-LGTVMNSLALQDFLEKEGIVTRVQTAITMGQVA-E--------------PYLPLRAV-RHLEKGRVVIFGAG---- 177 (281)
T ss_dssp --H-HHHHHHHHHHHHHHHHTTCCEEEEESSCCGGGS-E--------------ECCHHHHH-HHHHTTCEEEEEST----
T ss_pred --H-HHHHHHHHHHHHHHHHcCCCEEEEecccccccc-c--------------ccchHHHH-HHHHcCCeEEEECC----
Confidence 3 2456777 6778999999999888876544332 1 22345666 78999999999982
Q ss_pred CCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 018330 248 FGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSL 324 (358)
Q Consensus 248 ~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al 324 (358)
+|. .++|+|++|+++|.+|+||+|+|+|||||||+++| +|+ ++|++++++|+.+ .|+|..|+.+|..+.
T Consensus 178 ~g~-~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~-------~g~~v~k~~Aa~~a~ 249 (281)
T 3nwy_A 178 MGL-PYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLD-------RGLRVADATAFSLCM 249 (281)
T ss_dssp TSS-TTCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-----CCCCBCSEECHHHHHT-------TTCCSSCHHHHHHHH
T ss_pred CCC-CCCCHHHHHHHHHHHcCCCEEEEeeccCccccCCCCcCCCCeEcccccHHHHHH-------cCCCcHHHHHHHHHH
Confidence 343 45899999999999999999999999999999854 455 6999999988643 257888999999999
Q ss_pred HcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 325 AQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 325 ~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.|++ ++|+||+.|++| .++|+|+++||+|.
T Consensus 250 ~~Gi~-v~I~~g~~p~~l-~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 250 DNGMP-ILVFNLLTDGNI-ARAVRGEKIGTLVT 280 (281)
T ss_dssp TTTCC-EEEEETTSTTHH-HHHHHTCCCSEEEC
T ss_pred HCCCe-EEEecCCCchHH-HHHHcCCCCceEEe
Confidence 99998 999999999997 58999999999985
|
| >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-32 Score=269.96 Aligned_cols=230 Identities=20% Similarity=0.294 Sum_probs=167.7
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEEC-ChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHG-GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMV 172 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhG-gg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~v 172 (358)
+++|+||||+++.+ ++.+.+++++|+.+++.|+++||||| +|+.++.+++..+.... +. +...++.+..+
T Consensus 2 ~~iViK~GGssl~~---~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~-----~~-~~~~~d~~~a~ 72 (421)
T 3ab4_A 2 ALVVQKYGGSSLES---AERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNP-----VP-PAREMDMLLTA 72 (421)
T ss_dssp CEEEEEECSGGGSS---HHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCS-----SC-CHHHHHHHHHH
T ss_pred CeEEEEEChhHhCC---HHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhcc-----CC-CHHHHHHHHHH
Confidence 68999999999998 76678999999999989999999997 68888888776542211 22 35566666543
Q ss_pred Hhhh-hHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCC-ccCCC-
Q 018330 173 LVGR-VNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASV-AADEF- 248 (358)
Q Consensus 173 l~g~-ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv-~~~~~- 248 (358)
|+ +|.. +...|+++|+++.++++.+..++++++.. .+++..++.+.|+.+|+.|.|||++|+ +.+++
T Consensus 73 --Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~-------~~~v~~~~~~~i~~~l~~g~ipVv~g~~g~~~~~ 143 (421)
T 3ab4_A 73 --GERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHG-------NARIVDVTPGRVREALDEGKICIVAGFQGVNKET 143 (421)
T ss_dssp --HHHHHHHHHHHHHHHTTCCEEECCCC------------------------CCHHHHHHHHHTTCEEEC----------
T ss_pred --HHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCC-------CeeechhhHHHHHHHHhCCCEEEEeCCcCcCCCC
Confidence 54 7774 88899999999999999888777766532 377888899999999999999999996 78888
Q ss_pred CCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 018330 249 GQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIR 322 (358)
Q Consensus 249 G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~ 322 (358)
|+++++ ++|++|+.+|.+|+||+|+++|||||||+++|. |+ ++|++|+++|+.+++..| .+..|.+++..
T Consensus 144 g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~G----a~v~~~~a~~~ 219 (421)
T 3ab4_A 144 RDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVG----SKILVLRSVEY 219 (421)
T ss_dssp --------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTT----CCSSCHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcC----CcCchHHHHHH
Confidence 998888 999999999999999999999999999998542 33 799999999999998753 35567779999
Q ss_pred HHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 323 SLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 323 al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.+.|++ ++|.|+..| +.||+|.
T Consensus 220 a~~~gi~-v~I~n~~~~-----------~~GT~I~ 242 (421)
T 3ab4_A 220 ARAFNVP-LRVRSSYSN-----------DPGTLIA 242 (421)
T ss_dssp HHHTTCC-EEEEESSSC-----------CCCEEEC
T ss_pred HHHcCCC-EEEecCcCC-----------CCCeEEE
Confidence 9999999 999998775 6899886
|
| >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-28 Score=255.43 Aligned_cols=230 Identities=20% Similarity=0.256 Sum_probs=175.6
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECC-hHHHhHHHHHcCCCccccCCcccCCHHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGG-GPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMV 172 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGg-g~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~v 172 (358)
+++|+||||+++.+ ++.+.+++++|+.+++.|+++|||||| |..++.++.... .+. .|. +...++.+..
T Consensus 2 ~~iViK~GGssl~~---~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~---~~~--~~~-~~~~~d~l~s- 71 (600)
T 3l76_A 2 ALIVQKFGGTSVGT---VERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQ---QIS--PNP-CRREMDMLLS- 71 (600)
T ss_dssp CEEEEEECSGGGSS---HHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHH---HHC--SSC-CHHHHHHHHH-
T ss_pred ceEEEEeCCCCcCC---HHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHH---hhc--cCC-CHHHHHHHHH-
Confidence 58999999999999 777789999999999899999999999 888777664211 010 122 2344543322
Q ss_pred Hhhh-hHHH-HHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccCCCC
Q 018330 173 LVGR-VNKS-LVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAADEFG 249 (358)
Q Consensus 173 l~g~-ln~~-lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G 249 (358)
.|+ +|.. +..+|+++|++++++++.+..+++..... .+++..++.+.|+.+|+.|.|||++| .+.+++|
T Consensus 72 -~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~-------~~~~~~~~~~~i~~ll~~g~IpVv~Gf~g~~~~g 143 (600)
T 3l76_A 72 -TGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHS-------RARILEIRPDRLEHHLREGKVVVVAGFQGISSVE 143 (600)
T ss_dssp -HHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC--------------CCEEEECCHHHHHTTTCEEEEECEEEC----
T ss_pred -HhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCC-------CceeccccHHHHHHHHhCCCEEEEECCeecCCCC
Confidence 254 6665 56799999999999999888887755322 23456667789999999999999998 5778888
Q ss_pred --Ccccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHH
Q 018330 250 --QSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCI 321 (358)
Q Consensus 250 --~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~ 321 (358)
.+.++ ++|++|+.+|.+|+||+|+++|||||||+++|. |+ ++|++++++|+.+++.. .+|+|.| +++.
T Consensus 144 ~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~--G~~vm~p--~a~~ 219 (600)
T 3l76_A 144 HLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASL--GAKVLHP--RAVE 219 (600)
T ss_dssp CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGG--GTTTCCH--HHHH
T ss_pred CEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhC--CCCccHH--HHHH
Confidence 44443 599999999999999999999999999998652 43 69999999999998764 4599999 6888
Q ss_pred HHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 322 RSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 322 ~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+.+.|++ ++|.|+..+ ..||+|.
T Consensus 220 ~a~~~gip-v~I~n~~~~-----------~~GT~I~ 243 (600)
T 3l76_A 220 IARNYGIP-LVVRSSWSD-----------EPGTKVV 243 (600)
T ss_dssp HHHHHTCC-EEEEETTCC-----------SCCEEEE
T ss_pred HHHHCCCe-EEEEECCCC-----------CCCeEEe
Confidence 88999999 999997642 4688875
|
| >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=213.73 Aligned_cols=237 Identities=16% Similarity=0.225 Sum_probs=167.1
Q ss_pred cCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECCh-HHHhHHHHHcCC-------Ccccc--------
Q 018330 92 RGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGG-PEINFWLKRFGI-------EPVFR-------- 155 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg-~~i~~~l~~~gi-------~~~~~-------- 155 (358)
..+++|.||||+++.+ .+.+..+++.|... .++++|+|+++. ...+.+++.... ...+.
T Consensus 25 ~~~~~V~KFGGTSva~---~e~i~~va~iI~~~--~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~~~~~~~~~~~~~i~~ 99 (510)
T 2cdq_A 25 KGITCVMKFGGSSVAS---AERMKEVADLILTF--PEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKE 99 (510)
T ss_dssp CCCCEEEEECTGGGSS---HHHHHHHHHHHHHC--TTCCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCHHHHHHHH
T ss_pred CCCeEEEEECCcccCC---HHHHHHHHHHHHhc--cCCCEEEEEcCCCCCchHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4578999999999999 65556666666432 357889999884 444444321110 00000
Q ss_pred ---------------------------CCc---ccCCHHHHHHHHHHHhhh-hHH-HHHHHHHHcCCeeEeecCCCccEE
Q 018330 156 ---------------------------DGL---RVTDANTMEIVSMVLVGR-VNK-SLVSLINKAGATAVGLSGMDGRLF 203 (358)
Q Consensus 156 ---------------------------~g~---rvt~~~~~~~v~~vl~g~-ln~-~lv~~L~~~Gi~av~lsg~d~~ll 203 (358)
.|. ....+..++.+.+ .|+ ++. .+...|+++|++++++++.+.+++
T Consensus 100 ~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s--~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~ 177 (510)
T 2cdq_A 100 LHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVS--FGECLSTRIFAAYLNTIGVKARQYDAFEIGFI 177 (510)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH--HHHHHHHHHHHHHHHHTTCCEEEECGGGTTCE
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEE
Confidence 000 0001222333322 244 343 467899999999999999998888
Q ss_pred EeecCCCCCCCCcccceeec----CHHHHHH-HHhCCCeEEEcC-CccCC-CCCccccC---hHHHHHHHHHHcCCCeEE
Q 018330 204 TARPSPNSDKLGFVGEVARV----DPTVIEP-LVNSGHIPVIAS-VAADE-FGQSYNIN---ADTVAGELAAALGAEKLI 273 (358)
Q Consensus 204 ~a~~~~~~~d~g~~g~v~~i----~~~~I~~-lL~~G~IPVi~g-v~~~~-~G~~~~i~---sD~~Aa~lA~~L~AdkLi 273 (358)
+...+.. +++..+ ..+.+.. |++.|.|||++| ++.++ +|.+++++ +|++|+.+|..|+|++|+
T Consensus 178 t~~~~~~-------~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~ 250 (510)
T 2cdq_A 178 TTDDFTN-------GDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQ 250 (510)
T ss_dssp ECSCSTT-------CCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEE
T ss_pred EecCCCc-------cchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEE
Confidence 8664331 222222 2345554 779999999999 67788 89998886 999999999999999999
Q ss_pred Eeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCC
Q 018330 274 LLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDA 350 (358)
Q Consensus 274 ~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~ 350 (358)
++|||||||+.+| .|+ ++|++|+++|+.++... .+++|.|| ++..+.+.|++ ++|.|+..|+
T Consensus 251 i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~--Ga~vmh~~--a~~~a~~~gIp-v~I~n~~~p~---------- 315 (510)
T 2cdq_A 251 VWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYF--GAQVLHPQ--SMRPAREGEIP-VRVKNSYNPK---------- 315 (510)
T ss_dssp EEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHH--HSSCCCHH--HHHHHHHHTCC-EEEEETTSTT----------
T ss_pred EEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhc--CcchhHHH--HHHHHHHCCCe-EEEEccCcCC----------
Confidence 9999999999854 234 69999999999999753 34789886 66677788999 9999988773
Q ss_pred CCceEEc
Q 018330 351 GAGTMIT 357 (358)
Q Consensus 351 g~GT~I~ 357 (358)
..||+|.
T Consensus 316 ~~GT~I~ 322 (510)
T 2cdq_A 316 APGTIIT 322 (510)
T ss_dssp SCCEEEE
T ss_pred CCCeEEe
Confidence 5788885
|
| >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=211.40 Aligned_cols=230 Identities=17% Similarity=0.236 Sum_probs=159.7
Q ss_pred CCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCc----------c-------cc
Q 018330 93 GKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEP----------V-------FR 155 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~----------~-------~~ 155 (358)
.+++|.||||+++.+ .+.+..+++.|. ....++|+|+|+...++..|.++.... . ..
T Consensus 2 m~~~V~KFGGTSv~~---~e~i~~va~ii~---~~~~~~vVVvSA~g~~Td~L~~~~~~~~~~~~~~~i~~i~~~~~~i~ 75 (449)
T 2j0w_A 2 SEIVVSKFGGTSVAD---FDAMNRSADIVL---SDANVRLVVLSASAGITNLLVALAEGLEPGERFEKLDAIRNIQFAIL 75 (449)
T ss_dssp -CCEEEEECSGGGSS---HHHHHHHHHHHT---SCTTEEEEEECCCTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCccCCC---HHHHHHHHHHHH---hcCCCEEEEeCCCCchHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 357999999999999 654455555543 234589999999544544443332110 0 00
Q ss_pred CCcc-------------------------cCCHHHHHHHHHHHhhhh-HH-HHHHHHHHcCCeeEeecCCCccEEEeecC
Q 018330 156 DGLR-------------------------VTDANTMEIVSMVLVGRV-NK-SLVSLINKAGATAVGLSGMDGRLFTARPS 208 (358)
Q Consensus 156 ~g~r-------------------------vt~~~~~~~v~~vl~g~l-n~-~lv~~L~~~Gi~av~lsg~d~~ll~a~~~ 208 (358)
+.+. ...+..++.+.+ .|+. +. .++..|+++|++++++++.+. +++...
T Consensus 76 ~~l~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~l~s--~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~- 151 (449)
T 2j0w_A 76 ERLRYPNVIREEIERLLENITVLAEAAALATSPALTDELVS--HGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDR- 151 (449)
T ss_dssp TTSSSTHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--HHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSC-
T ss_pred HHhcccHHHHHHHHHHHHHHHHHhhhhccCcCHHHHHHHHH--HHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCC-
Confidence 0110 001223333333 2444 33 578899999999999999887 555332
Q ss_pred CCCCCCCcccceeec-----CHHHHHHHHhCCCeEEEcC-CccCCCCCccccC---hHHHHHHHHHHcCCCeEEEeeccc
Q 018330 209 PNSDKLGFVGEVARV-----DPTVIEPLVNSGHIPVIAS-VAADEFGQSYNIN---ADTVAGELAAALGAEKLILLTDVA 279 (358)
Q Consensus 209 ~~~~d~g~~g~v~~i-----~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i~---sD~~Aa~lA~~L~AdkLi~lTDV~ 279 (358)
|+. +++... ..+.++.|++.+ |||++| ++.+++|.+++++ +|++|+.+|.+|+|++|+++||||
T Consensus 152 -----~~~-~~~~~~~~~~~~~~~l~~l~~~~-IpVv~Gf~g~~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVd 224 (449)
T 2j0w_A 152 -----FGR-AEPDIAALAELAALQLLPRLNEG-LVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVP 224 (449)
T ss_dssp -----TTS-CCBCHHHHHHHHHHHTHHHHHHS-EEEEESSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred -----CCC-ccccHhHhHHHHHHHHHHHhcCC-EEEEeCCeeeCCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccC
Confidence 221 222221 234566666555 999998 6778999998887 999999999999999999999999
Q ss_pred ccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHH---HHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCc
Q 018330 280 GILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKV---NCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAG 353 (358)
Q Consensus 280 GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv---~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~G 353 (358)
|||+++| .|+ ++|++++++|+.+++..| +|+ +++..+.+.|++ ++|.|++.|+ +.|
T Consensus 225 Gv~~~DPr~~~~a~~i~~is~~e~~ela~~G-------~kvlh~~a~~~a~~~gi~-v~I~~~~~p~----------~~G 286 (449)
T 2j0w_A 225 GIYTTDPRVVSAAKRIDEIAFAEAAEMATFG-------AKVLHPATLLPAVRSDIP-VFVGSSKDPR----------AGG 286 (449)
T ss_dssp SEESSCTTTCTTCCEESEEEHHHHHHHHHTT-------CTTSCTTTHHHHHHHTCC-EEEEESSCTT----------SCC
T ss_pred CcCcCCCCCCCCCEEccCccHHHHHHHHhcC-------CccchHHHHHHHHHCCCe-EEEEECCCCC----------CCe
Confidence 9999855 244 699999999999997643 477 566678889998 9999998874 689
Q ss_pred eEEc
Q 018330 354 TMIT 357 (358)
Q Consensus 354 T~I~ 357 (358)
|+|.
T Consensus 287 T~I~ 290 (449)
T 2j0w_A 287 TLVC 290 (449)
T ss_dssp EEEE
T ss_pred eEEe
Confidence 9986
|
| >3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=186.08 Aligned_cols=123 Identities=18% Similarity=0.187 Sum_probs=100.9
Q ss_pred eeecCHHHHHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-ccc
Q 018330 220 VARVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLV 292 (358)
Q Consensus 220 v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI 292 (358)
+..++.+.+..+|+.|.|||++| ++.+++|.+.++ ++|++|+.+|.+|+|++++++|||||||+++|. |+ ++|
T Consensus 148 ~~~~~~~~l~~~l~~~~v~Vv~Gf~g~~~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i 227 (446)
T 3tvi_A 148 DEKKSYEKIKEKVLSCNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTI 227 (446)
T ss_dssp CHHHHHHHHHHHTTTCSSEECCCSEEECTTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBC
T ss_pred ehHhhHHHHHHHHhcCCeEEeeCceecCCCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEc
Confidence 34567889999999999999999 577888998877 599999999999999999999999999998542 44 699
Q ss_pred ccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 293 KEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 293 ~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
++++++|+.+++..| .+.| +.+++.-+.+.|++ ++|.|+..|+ ..||+|.
T Consensus 228 ~~is~~e~~ela~~G--a~vl--~~~a~~~a~~~~ip-i~i~~~~~p~----------~~GT~i~ 277 (446)
T 3tvi_A 228 SKISYKELRELSYMG--ATVL--HEEAIFPVKDSGIP-INIKNTNKPS----------DPGTLIL 277 (446)
T ss_dssp SEEEHHHHHHTTTC------C--CSTTTHHHHHSSCC-EEEEETTBTT----------SCCEEEE
T ss_pred ceeCHHHHHHHHhCC--CCcc--hHHHHHHHHHcCCe-EEEecCCCCC----------CCCEEEe
Confidence 999999999996533 3556 34577788889999 9999987763 5688875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 358 | ||||
| d2bufa1 | 300 | c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Ps | 3e-85 | |
| d2btya1 | 282 | c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Th | 6e-85 | |
| d2ap9a1 | 291 | c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {My | 2e-74 | |
| d1b7ba_ | 307 | c.73.1.1 (A:) Carbamate kinase {Enterococcus faeci | 8e-52 | |
| d1e19a_ | 313 | c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcu | 1e-45 | |
| d1gs5a_ | 258 | c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escheri | 3e-42 | |
| d2akoa1 | 250 | c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobact | 2e-06 |
| >d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]} Length = 300 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 258 bits (659), Expect = 3e-85
Identities = 134/295 (45%), Positives = 195/295 (66%), Gaps = 17/295 (5%)
Query: 74 AEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVL 133
A +LSE+LP+I++F GKT+V+KYGG AM+ + L A +D+VL+ VG+ PV+
Sbjct: 7 AAQVAKVLSEALPYIRRFVGKTLVIKYGGNAME---SEELKAGFARDVVLMKAVGINPVV 63
Query: 134 VHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAV 193
VHGGGP+I LKR IE F DG+RVTDA TM++V MVL G+VNK +V+LIN+ G +A+
Sbjct: 64 VHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAI 123
Query: 194 GLSGMDGRLFTARPSPNSDK-----------LGFVGEVARVDPTVIEPLVNSGHIPVIAS 242
GL+G D L A+ + + +G VGEV V+ ++ LV IPVIA
Sbjct: 124 GLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAP 183
Query: 243 VAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKK 302
+ G+SYNINAD VAG++A AL AEKL+LLT++AG+++ + + + + V +
Sbjct: 184 IGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDKQGQVL---TGLSTEQVNE 240
Query: 303 MIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357
+I DG + GGM+PK+ C + ++ GV +A IIDGRV +++LLEI TD+G GT+I+
Sbjct: 241 LIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLIS 295
|
| >d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Thermotoga maritima [TaxId: 2336]
Score = 257 bits (656), Expect = 6e-85
Identities = 132/281 (46%), Positives = 190/281 (67%), Gaps = 7/281 (2%)
Query: 77 RVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHG 136
V++L E+LP+I++F GKT V+K+GG+AMK ++N + ++D++LL G++P++VHG
Sbjct: 5 TVNVLLEALPYIKEFYGKTFVIKFGGSAMK---QENAKKAFIQDIILLKYTGIKPIIVHG 61
Query: 137 GGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLS 196
GGP I+ +K GIEPVF++G RVTD TMEIV MVLVG++NK +V +N G AVG+
Sbjct: 62 GGPAISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGIC 121
Query: 197 GMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINA 256
G D +L A +G+VG+V +V+P ++ L+ + +IPVIA V E G SYNINA
Sbjct: 122 GKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINA 181
Query: 257 DTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPK 316
DT A E+A +L AEKLILLTDV G+L++ L+ + +++I DG V GGMIPK
Sbjct: 182 DTAAAEIAKSLMAEKLILLTDVDGVLKD----GKLISTLTPDEAEELIRDGTVTGGMIPK 237
Query: 317 VNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357
V C + ++ GV II+G +EH++LLEI + G GTMI
Sbjct: 238 VECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIK 278
|
| >d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 230 bits (586), Expect = 2e-74
Identities = 124/290 (42%), Positives = 180/290 (62%), Gaps = 10/290 (3%)
Query: 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPV 132
P + +L+E+LP++++ GK +VVKYGG AM D L + D+ L G+ PV
Sbjct: 5 PTHIKAQVLAEALPWLKQLHGKVVVVKYGGNAMT---DDTLRRAFAADMAFLRNCGIHPV 61
Query: 133 LVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATA 192
+VHGGGP+I L+R GIE F+ G RVT +++ MVL G+V + LV+LIN G A
Sbjct: 62 VVHGGGPQITAMLRRLGIEGDFKGGFRVTTPEVLDVARMVLFGQVGRELVNLINAHGPYA 121
Query: 193 VGLSGMDGRLFTARPS-----PNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247
VG++G D +LFTA + +G VG+V +V+ + LV +G IPV++++A D
Sbjct: 122 VGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDA 181
Query: 248 FGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307
G +NINADT A +A ALGAEKL++LTD+ G+ D SLV EID + +++
Sbjct: 182 DGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDRDSLVSEIDTGTLAQLLPTL 241
Query: 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357
+ GM+PKV C+R++ GV +A IIDGRV H +L+E+ TDAG GT +
Sbjct: 242 E--LGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVV 289
|
| >d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Enterococcus faecium [TaxId: 1352]
Score = 172 bits (436), Expect = 8e-52
Identities = 51/310 (16%), Positives = 97/310 (31%), Gaps = 49/310 (15%)
Query: 93 GKTIVVKYGGAAM-----KPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKR 147
GK +VV GG A+ + + L LV L G R ++ HG GP++ L +
Sbjct: 1 GKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQ 60
Query: 148 FGIEPVFRDGLRVTDANTMEIV-----------------------SMVLVGRVNKSLVSL 184
++ D ++ +V
Sbjct: 61 QQAADSEKNPAMPLDTCVAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADE 120
Query: 185 INKAGATAVGLSGMDGRLFTARPSPNSDK----------LGFVGEVARVDPTVIEPLVNS 234
K +G + A + K + + + I L+ +
Sbjct: 121 AFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGWRKVVPSPKPIDIHEAETINTLIKN 180
Query: 235 GHIPVIASVAADEF------GQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDP 288
I + G I+ D + +LA + A+ L++LT V + N P
Sbjct: 181 DIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCINYGKP 240
Query: 289 MS-LVKEIDIKGVKKMIEDGKVG-GGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEI 346
+ + + +++ + G G M+PK+ I+ + +II L +
Sbjct: 241 DEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSL---ENLGSM 297
Query: 347 LTDAGAGTMI 356
D GT++
Sbjct: 298 SGDEIVGTVV 307
|
| >d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 156 bits (395), Expect = 1e-45
Identities = 52/316 (16%), Positives = 101/316 (31%), Gaps = 57/316 (18%)
Query: 93 GKTIVVKYGGAAM-KPNQKDNL------LASVVKDLVLLSVVGLRPVLVHGGGPEINFWL 145
GK +V+ GG A+ + QK + + + + + G V+ HG GP++ L
Sbjct: 1 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLL 60
Query: 146 KRFGIEPVFRDGLRVTDANTMEIVSMVLVGRVNKSL-------------VSLINKAGATA 192
+ + + ++L V++I +
Sbjct: 61 LHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDK 120
Query: 193 VGLSGMDGRLFTAR------------------------------PSPNSDKLGFVGEVAR 222
+ + PSP+ + +
Sbjct: 121 NDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKK 180
Query: 223 VDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGIL 282
+ + + + G + + G I+ D +LA + A+ ++LTDV G
Sbjct: 181 LVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAA 240
Query: 283 ENREDPMS-LVKEIDIKGVKKMIEDGKVG-GGMIPKVNCCIRSLAQGVRTASIIDGRVEH 340
++E+ ++ ++K E+G G M PKV IR + G A I +E
Sbjct: 241 LYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAII--AHLEK 298
Query: 341 SLLLEILTDAGAGTMI 356
+E L GT +
Sbjct: 299 --AVEALEG-KTGTQV 311
|
| >d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Escherichia coli [TaxId: 562]
Score = 146 bits (367), Expect = 3e-42
Identities = 76/264 (28%), Positives = 123/264 (46%), Gaps = 11/264 (4%)
Query: 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRP-VLVHGGGPEINFWLKRFGIEP 152
+++K GG + + L + LV RP V+VHGGG ++ +K +
Sbjct: 3 NPLIIKLGGVLLD---SEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPV 59
Query: 153 VFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSD 212
++GLRVT A+ ++I++ L G NK+L++ K AVGL DG +
Sbjct: 60 KKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQ--LDE 117
Query: 213 KLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKL 272
+LG VG P +I L+ +G++PV++S+ + GQ N+NAD A LAA LGA+ +
Sbjct: 118 ELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLI 177
Query: 273 ILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTAS 332
+L + + + E+ +++IE G + GMI KVN + + R
Sbjct: 178 LLSDVSGIL----DGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVD 233
Query: 333 IIDGRVEHSLLLEILTDAGAGTMI 356
I R L + GT I
Sbjct: 234 IASWRHAE-QLPALFNGMPMGTRI 256
|
| >d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Glutamate 5-kinase species: Campylobacter jejuni [TaxId: 197]
Score = 45.8 bits (107), Expect = 2e-06
Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 36/274 (13%)
Query: 94 KTIVVKYGGAAMKPNQKDNL--LASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIE 151
K IVVK G + + L ++V L L +LV I+ + I+
Sbjct: 1 KRIVVKVGSHVISEENTLSFERLKNLVAFLAKLM-EKYEVILVTSAA--ISAGHTKLDID 57
Query: 152 PVFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNS 211
+V A + V + K L + T
Sbjct: 58 RKNLINKQVLAAIGQPFLISVYNELLAKFNK-LGGQILLTGKDFDSRKATKHAKNAIDMM 116
Query: 212 DKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEK 271
LG + + D T I + + D+++ A+
Sbjct: 117 INLGILPIINENDATAI--------------------EEIVFGDNDSLSAYATHFFDADL 156
Query: 272 LILLTDVAGILENRED------PMSLVKEIDIKGVKKMIEDGKV--GGGMIPKVNCCIRS 323
L++L+D+ G + + + I + ++ I+ G GG++ K+
Sbjct: 157 LVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFL 216
Query: 324 LAQGVRTASIIDGRVEHSLLLEILTD-AGAGTMI 356
L + + G +L D GT+
Sbjct: 217 LEHNKKMF-LASGFDLSVAKTFLLEDKQIGGTLF 249
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| d2bufa1 | 300 | N-acetyl-l-glutamate kinase {Pseudomonas aeruginos | 100.0 | |
| d2btya1 | 282 | N-acetyl-l-glutamate kinase {Thermotoga maritima [ | 100.0 | |
| d2ap9a1 | 291 | N-acetyl-l-glutamate kinase {Mycobacterium tubercu | 100.0 | |
| d1e19a_ | 313 | Carbamate kinase {Archaeon Pyrococcus furiosus [Ta | 100.0 | |
| d1b7ba_ | 307 | Carbamate kinase {Enterococcus faecium [TaxId: 135 | 100.0 | |
| d1gs5a_ | 258 | N-acetyl-l-glutamate kinase {Escherichia coli [Tax | 100.0 | |
| d2akoa1 | 250 | Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1 | 100.0 | |
| d2brxa1 | 225 | Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: | 99.98 | |
| d2ij9a1 | 219 | Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax | 99.96 | |
| d1ybda1 | 236 | Uridylate kinase PyrH {Neisseria meningitidis [Tax | 99.95 | |
| d2a1fa1 | 236 | Uridylate kinase PyrH {Haemophilus influenzae [Tax | 99.95 | |
| d1z9da1 | 238 | Uridylate kinase PyrH {Streptococcus pyogenes [Tax | 99.92 | |
| d2hmfa1 | 302 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 99.85 | |
| d2cdqa1 | 304 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 99.84 | |
| d2j0wa1 | 292 | Aspartokinase {Escherichia coli [TaxId: 562]} | 99.82 |
| >d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=8.6e-63 Score=470.86 Aligned_cols=280 Identities=48% Similarity=0.822 Sum_probs=266.4
Q ss_pred ChhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCc
Q 018330 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEP 152 (358)
Q Consensus 73 ~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~ 152 (358)
...++++||+||+|||++||||++|||+||+++.+ +++..++++||+.|+..|.++|||||||++++.+++++++++
T Consensus 6 ~~~~~~~~l~~a~PYi~~~r~ktiVIKlGG~~l~~---~~~~~~~~~dIa~L~~~G~~vViVhGgg~~i~~~l~~~gi~~ 82 (300)
T d2bufa1 6 DAAQVAKVLSEALPYIRRFVGKTLVIKYGGNAMES---EELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIES 82 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTS---SHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEEEChHHhCC---hhHHHHHHHHHHHHHHcCCcEEEecChHHHHHHHHHhcccCc
Confidence 34789999999999999999999999999999999 777789999999999999999999999999999999999999
Q ss_pred cccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCC-----------CCCCCCccccee
Q 018330 153 VFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSP-----------NSDKLGFVGEVA 221 (358)
Q Consensus 153 ~~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~-----------~~~d~g~~g~v~ 221 (358)
+|.+|+|+|+.++|+++.+++.+++|+.+++.|+++|++++++++.|++++.+++.. ...|++|+|+|+
T Consensus 83 ~~~~g~RvT~~~~l~~~~~~~~g~vn~~lv~~l~~~g~~a~~l~~~d~~~i~~~~~~~~~~~~~~~~~~~id~g~~G~v~ 162 (300)
T d2bufa1 83 HFIDGMRVTDAATMDVVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVT 162 (300)
T ss_dssp CBSSSSBCBCHHHHHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEE
T ss_pred eecCCcccccchhHHHHHHHHHhHHHHHHHHHHHhcCCcccccCCCccceEEeecccccccCcccccccccccCccccee
Confidence 999999999999999999999999999999999999999999999999999887642 246899999999
Q ss_pred ecCHHHHHHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHH
Q 018330 222 RVDPTVIEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVK 301 (358)
Q Consensus 222 ~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~ 301 (358)
.++.+.|+.+|+.|+|||+++++++.+|+.+|+|+|.+|+.+|.+|+|++|||+|||||||++ +++++++++.++++
T Consensus 163 ~v~~~~i~~ll~~g~Ipvis~~~~~~~G~~~nin~D~~Aa~lA~~L~AdkLI~Ltdv~Gv~~~---~g~~~~~l~~~~~~ 239 (300)
T d2bufa1 163 GVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDK---QGQVLTGLSTEQVN 239 (300)
T ss_dssp EECHHHHHHHHHTTCEEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCT---TSCBCCEECHHHHH
T ss_pred ecchhHHHHHhcCCCeEEecccccCcccchhcccHHHHHHHHHHHcCCCeEEEEcCCCccccC---CCcchhhccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975 36789999999999
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 302 KMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 302 ~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
++++++.++|||++||++|.+|++.||++|||+||+.|++|+.|+|+++|+||+|+.
T Consensus 240 ~li~~~~i~gGM~~Kl~aa~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~~ 296 (300)
T d2bufa1 240 ELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISN 296 (300)
T ss_dssp HHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEEC
T ss_pred HHHHcCCcCchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHcCCCCceeEEec
Confidence 999999999999999999999999999999999999999999999999999999974
|
| >d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.1e-59 Score=439.81 Aligned_cols=277 Identities=48% Similarity=0.835 Sum_probs=265.2
Q ss_pred hhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccc
Q 018330 75 EFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVF 154 (358)
Q Consensus 75 ~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~ 154 (358)
.++++.||||+|||++||+|++|||+||+++++ +..+++++++|+.|++.|+++|||||||++++..+.++++++.+
T Consensus 3 ~~~~~~~~~~~pyi~~~r~k~iVIKlGgsvi~~---~~~~~~l~~dIa~L~~~G~~iVlVhGg~~~~~~~l~~~~i~~~~ 79 (282)
T d2btya1 3 IDTVNVLLEALPYIKEFYGKTFVIKFGGSAMKQ---ENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVF 79 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEECSHHHHS---HHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCB
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEEECchHhCC---hhHHHHHHHHHHHHHHCCCeEEEEECCCccchhhHHHcCCccee
Confidence 578999999999999999999999999999999 87778999999999999999999999999999999999999999
Q ss_pred cCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhC
Q 018330 155 RDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNS 234 (358)
Q Consensus 155 ~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~ 234 (358)
.++.|+|+.+.++++.+++.+++|..++..|+++|++++++++.+..+..+.......|++++|+++.+|.+.|+.+|++
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~n~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~d~~~~g~~~~v~~~~i~~lL~~ 159 (282)
T d2btya1 80 KNGHRVTDEKTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIEN 159 (282)
T ss_dssp SSSSBCBCHHHHHHHHHHHHHTHHHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHT
T ss_pred ccCccccchhhHHHHHHHHhchhhHHHHHHHHhcCCCeeeeeccccceeEeccccccccccccccccccChHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999988888777666789999999999999999999999
Q ss_pred CCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcH
Q 018330 235 GHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMI 314 (358)
Q Consensus 235 G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~ 314 (358)
|.|||++|++++.+|+.+|+|+|.+|+.+|.+++|++|||+||++|||++ ++++++++.+|++.+..+++++|||.
T Consensus 160 ~~ipvi~~~~~~~~g~~~nl~~d~~aa~iA~~l~AdkLI~ltdv~Gl~~d----~~~i~~~~~~~~~~~~~~~~~tgGM~ 235 (282)
T d2btya1 160 DYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD----GKLISTLTPDEAEELIRDGTVTGGMI 235 (282)
T ss_dssp TCEEEEESEEECSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET----TEECCEECHHHHHHHHTTTCSCTTHH
T ss_pred CCceeecCcccCCcceeeeccccchhHHHhhhcCCceeEEeccccceecC----ccccccCCHHHHHHHHHcCCcCchHH
Confidence 99999999999999999999999999999999999999999999999975 57999999999999999899999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 315 PKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 315 ~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+||++|.+|++.||++|||+||+.|++|+.|+|+++++||+|+.
T Consensus 236 ~Kl~aA~~A~~~GV~~v~I~~g~~~~~ll~elft~~g~GT~I~~ 279 (282)
T d2btya1 236 PKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKE 279 (282)
T ss_dssp HHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999963
|
| >d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2.4e-58 Score=437.81 Aligned_cols=281 Identities=44% Similarity=0.777 Sum_probs=265.5
Q ss_pred ChhhhHHHHHhhhHHHHhhcCCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCc
Q 018330 73 PAEFRVDILSESLPFIQKFRGKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEP 152 (358)
Q Consensus 73 ~~~~~~~~l~~a~pyi~~~~~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~ 152 (358)
+.+.|+++||||+|||++||+|++|||+||+++++ ++++.+++++|+.|++.|+++|||||||+++++.+.++++++
T Consensus 5 ~~~~~~~~l~~a~pYi~~~r~ktiVIKlGGsvl~~---~~~~~~l~~dia~L~~~G~~vVlVhGg~~~i~~~l~~~~~~~ 81 (291)
T d2ap9a1 5 PTHIKAQVLAEALPWLKQLHGKVVVVKYGGNAMTD---DTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEG 81 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCEEEEEECTHHHHS---HHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCC
T ss_pred ChhhHHHHHHHHhHHHHHhCCCEEEEEECcHHhcC---HHHHHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHcCCCc
Confidence 66899999999999999999999999999999999 877789999999999999999999999999999999999999
Q ss_pred cccCCcccCCHHHHHHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCC-----CCCCCCcccceeecCHHH
Q 018330 153 VFRDGLRVTDANTMEIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSP-----NSDKLGFVGEVARVDPTV 227 (358)
Q Consensus 153 ~~~~g~rvt~~~~~~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~-----~~~d~g~~g~v~~i~~~~ 227 (358)
+|.++.|+|+.++++.+.+++.+..|..+++.+.++|+.+.++.+.+.++..+.... ...|++++|.++.++.+.
T Consensus 82 ~~~~~~r~t~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~G~v~~v~~~~ 161 (291)
T d2ap9a1 82 DFKGGFRVTTPEVLDVARMVLFGQVGRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAA 161 (291)
T ss_dssp CCSSSSCCBCHHHHHHHHHHHHHTHHHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHH
T ss_pred ccccccccCcHHHHHHHHHhhhhHHHHHHHHHHHhcCCccccchhhhcccccccccccccccccccceeecccccchHHH
Confidence 999999999999999999998899999999999999999999999999988776532 245799999999999999
Q ss_pred HHHHHhCCCeEEEcCCccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCC
Q 018330 228 IEPLVNSGHIPVIASVAADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDG 307 (358)
Q Consensus 228 I~~lL~~G~IPVi~gv~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~ 307 (358)
|+.+|++|.|||++|++.+.+|+.+|+|+|.+|+.+|.+|+|++|||+|||||||++++++++++++++..|+++++.
T Consensus 162 I~~ll~~g~ipvi~~~~~~~~g~~~n~d~D~lAa~lA~~l~AdkLI~LTdv~Gv~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (291)
T d2ap9a1 162 MLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDRDSLVSEIDTGTLAQLLP-- 239 (291)
T ss_dssp HHHHHHTTCEEEEESEEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTCTTCEESEEEHHHHHHHGG--
T ss_pred HHHHHhcCCCcccCccccCCccccccccHHHHHHHHHHhcCCcEEEEeeccCcccccccccccccccCCHHHHHHHHh--
Confidence 999999999999999999999999999999999999999999999999999999998777778999999999999875
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 308 KVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 308 ~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
.++|||++|+++|.+|++.||+||||+||+.+++|+.|+|+++|+||+|.+
T Consensus 240 ~~~gGM~~Kl~aA~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~r 290 (291)
T d2ap9a1 240 TLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVR 290 (291)
T ss_dssp GSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEEC
T ss_pred hhhCchHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCceEEec
Confidence 578999999999999999999999999999999999999999999999964
|
| >d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.3e-42 Score=332.06 Aligned_cols=261 Identities=20% Similarity=0.240 Sum_probs=216.7
Q ss_pred CCeEEEEECCcccCCCCh----h---HHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHH
Q 018330 93 GKTIVVKYGGAAMKPNQK----D---NLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANT 165 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~----~---~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~ 165 (358)
||+||||+||++|++++. + ..+++++++|+.|+..|+++|||||||++++.++.++++.+.+.++.|+++..+
T Consensus 1 ~KrIVIKiGgs~l~~~~~~~~~~~~~~~l~~~~~~Ia~L~~~G~~vVlVhGGgpqi~~~l~~~~~~~~~~~~~~~~~~~~ 80 (313)
T d1e19a_ 1 GKRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQATYGIPAQPMDVA 80 (313)
T ss_dssp CCEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_pred CCEEEEEeChHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCCccccCCCcccccHHH
Confidence 799999999999998742 1 234688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHcCCeeEe-------------ecCCCccEEEeecCC--------------------C--
Q 018330 166 MEIVSMVLVGRVNKSLVSLINKAGATAVG-------------LSGMDGRLFTARPSP--------------------N-- 210 (358)
Q Consensus 166 ~~~v~~vl~g~ln~~lv~~L~~~Gi~av~-------------lsg~d~~ll~a~~~~--------------------~-- 210 (358)
+..+.+.+.+.++..+...+.+++++... +++.+.+..++..+. .
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 160 (313)
T d1e19a_ 81 GAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGW 160 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHhhHHHHhhhhhhHHHHhhccCceeehhhhhhHHHHHHhhcCceeeeccCccc
Confidence 99999988888899999998888876332 233344444433211 0
Q ss_pred CCCCCcccceeecCHHHHHHHHhCCCeEEEcCCcc--------CCCCCccccChHHHHHHHHHHcCCCeEEEeecccccc
Q 018330 211 SDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAA--------DEFGQSYNINADTVAGELAAALGAEKLILLTDVAGIL 282 (358)
Q Consensus 211 ~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~--------~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~ 282 (358)
+.+.+..+.++.++.+.|..++++|.+|++++.+. +.+|+.+|+|+|++|+.+|.+|+||+|||+|||||||
T Consensus 161 ~~~v~~~~~~~~v~~~~i~~~~~~~~i~vl~~~~~~~v~~~~~~~~G~~~ninaD~lAa~vA~~l~Ad~LIlLTdv~Gv~ 240 (313)
T d1e19a_ 161 RRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAA 240 (313)
T ss_dssp EEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCE
T ss_pred eeeccCCCceeEecccceeeccccchhhhhccCCCCCccccCCCcCceEEecchhHHHHHHHHHHHHHHHHhccCCccee
Confidence 11223455677889999999999999999997443 2368999999999999999999999999999999999
Q ss_pred ccccccC-cccccccHHHHHHHHhCCC-CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 283 ENREDPM-SLVKEIDIKGVKKMIEDGK-VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 283 ~~~~dp~-~lI~~I~~~e~~~l~~~~~-vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
++++||+ ++|++++.+|+++++..+. .+|||+||+++|+++++.|+.+|+|.+ ++.| .++|+|+ .||+|.|
T Consensus 241 ~~~~~~~~~~i~~l~~~e~~~li~~g~~~~GGM~~Kv~aA~~a~~~Gv~~v~I~~---~~~i-~~~l~g~-~GT~i~P 313 (313)
T d1e19a_ 241 LYYGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAH---LEKA-VEALEGK-TGTQVLP 313 (313)
T ss_dssp ETTTSTTCEECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEE---GGGH-HHHHTTS-SSEEEEC
T ss_pred ccCCCcccceeeeCCHHHHHHHhhCCCcccCChHHHHHHHHHHHHhCCCEEEECC---hHHH-HHHHCCC-CCCEEcC
Confidence 9877765 6999999999999998775 789999999999999999999999976 4555 6788874 8999986
|
| >d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Enterococcus faecium [TaxId: 1352]
Probab=100.00 E-value=4.7e-41 Score=319.61 Aligned_cols=260 Identities=20% Similarity=0.251 Sum_probs=193.8
Q ss_pred CCeEEEEECCcccCCCCh-----hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQK-----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTME 167 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~-----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~ 167 (358)
||++|||+||++|++++. .+.+.+++++|+.|+..|+++|||||||++++..+.+.+..+.+..+.|.++...+.
T Consensus 1 gk~iVIK~GGsal~~~~~~~~~~~~~l~~~~~~Ia~L~~~G~~vViVHGGgpqi~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (307)
T d1b7ba_ 1 GKKMVVALGGNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSEKNPAMPLDTCVAM 80 (307)
T ss_dssp CCEEEEEECHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTCSSSSCCCCHHHHHHH
T ss_pred CCEEEEEEChhhhCCCCCCchHHHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcCCCCcccccccccchHHHH
Confidence 799999999999998652 135578999999999999999999999999987776666555554444444444333
Q ss_pred HHHHHHhhhhHHHHHHHHHHc------------------------CCeeEeecCCCccEEEeecCC----------CCCC
Q 018330 168 IVSMVLVGRVNKSLVSLINKA------------------------GATAVGLSGMDGRLFTARPSP----------NSDK 213 (358)
Q Consensus 168 ~v~~vl~g~ln~~lv~~L~~~------------------------Gi~av~lsg~d~~ll~a~~~~----------~~~d 213 (358)
...+. ...+...+....... +..++++.+.+.....+.... .+.+
T Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (307)
T d1b7ba_ 81 TQGSI-GYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGWRKV 159 (307)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTTCCCEEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHTTTCCEEEETTTEEEEE
T ss_pred HHHHH-HHHHhhhhHHHHhhcccchhhhhhhhhhhHHHHHHHHHccCcceeeecccchHHHHHHhhcceeccccccceee
Confidence 33332 223333333333222 233444433322221111100 0112
Q ss_pred CCcccceeecCHHHHHHHHhCCCeEEEcCC------ccCCCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccc
Q 018330 214 LGFVGEVARVDPTVIEPLVNSGHIPVIASV------AADEFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRED 287 (358)
Q Consensus 214 ~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv------~~~~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d 287 (358)
.++.+.+..++.+.+..+++.+.+|++.+. +.+.+|+.+|+|+|++|+.+|.+|+||+|||+|||||||++++|
T Consensus 160 ~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~ninaD~lAa~iA~~l~Ad~Li~lTdv~Gv~~~~~~ 239 (307)
T d1b7ba_ 160 VPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCINYGK 239 (307)
T ss_dssp ECCCCEEEETTHHHHHHHHHTTEEEECSGGGCEEEETTTTEECSCCCCHHHHHHHHHHHHTCSEEEEECSSSSCEETTTS
T ss_pred cCcCceeeeechhhhhhhhhcCceeeccCCccccccccCCCCcEEecchhHHHHHHHHHhhhhheeeccccCceeeCCCc
Confidence 234556667899999999999999998763 46678999999999999999999999999999999999999877
Q ss_pred cC-cccccccHHHHHHHHhCCC-CCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEE
Q 018330 288 PM-SLVKEIDIKGVKKMIEDGK-VGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMI 356 (358)
Q Consensus 288 p~-~lI~~I~~~e~~~l~~~~~-vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I 356 (358)
|+ +++++++.+|+++++..+. .+|||+|||++|..|++.|++++||+++ +.. +.++|+++++||+|
T Consensus 240 ~~~~~i~~l~~~e~~~l~~~g~~~~GGM~pKl~aA~~al~~Gv~~~~ii~~--~~~-l~~l~~~~~~GT~I 307 (307)
T d1b7ba_ 240 PDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS--LEN-LGSMSGDEIVGTVV 307 (307)
T ss_dssp TTCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHTTSTTCEEEEEC--HHH-HTTCSSCSCEEECC
T ss_pred ccccccccCCHHHHHHHHHCCCcccCChHHHHHHHHHHHHcCCCeEEEECC--HHH-HHHHHcCCCCCCCC
Confidence 76 5899999999999998875 7899999999999999999999999986 333 57999999999987
|
| >d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-39 Score=297.29 Aligned_cols=255 Identities=32% Similarity=0.485 Sum_probs=229.8
Q ss_pred CCeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCe-EEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHH
Q 018330 93 GKTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLR-PVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSM 171 (358)
Q Consensus 93 ~k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~-vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~ 171 (358)
.++||||+||+++++ ++.+++++++|+.|++.|++ +|||||||++++.+++++++++++..|.++++.+++..+.+
T Consensus 2 m~~IVIKiGgs~lt~---~~~~~~~~~~ia~l~~~g~~~vvvvhG~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T d1gs5a_ 2 MNPLIIKLGGVLLDS---EEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITG 78 (258)
T ss_dssp CCCEEEEECGGGGGC---HHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCEETTEECBCHHHHHHHHH
T ss_pred CCCEEEEECchhccC---HHHHHHHHHHHHHHHHCCCceEEEECCCchhhhcchhhhccccccccccchhhHHHHHHHHH
Confidence 578999999999999 76678999999999999987 89999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCc
Q 018330 172 VLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQS 251 (358)
Q Consensus 172 vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~ 251 (358)
++.+.+|..++..+...|..+..+++.+.+....... ..++.+.+++..++...+..+++.+.+|++.+++.+.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~i~v~~~~~~~~~~~~ 156 (258)
T d1gs5a_ 79 ALAGTANKTLLAWAKKHQIAAVGLFLGDGDSVKVTQL--DEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQL 156 (258)
T ss_dssp HHHTHHHHHHHHHHHHTTCCEEEECTTGGGCEEEEEC--CGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTTSCE
T ss_pred HHHHHHHHHHHHHHhccCccccccccccccccccccc--cccccccccccccccchHHHHHhccccccccccccccCCcE
Confidence 9889999999999999999999998887777665543 24677889999999999999999999999999988889999
Q ss_pred cccChHHHHHHHHHHcCCCeEEEeeccccccccccccCcccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEE
Q 018330 252 YNINADTVAGELAAALGAEKLILLTDVAGILENREDPMSLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTA 331 (358)
Q Consensus 252 ~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~dp~~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v 331 (358)
+++++|.+++.+|..++|++ ++++|++|++..+ ...++.+...+...+...++++|||.+|+++|.++++.|+++|
T Consensus 157 ~~~~~~~~a~~~a~~l~a~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~~Gv~~v 232 (258)
T d1gs5a_ 157 MNVNADQAATALAATLGADL-ILLSDVSGILDGK---GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPV 232 (258)
T ss_dssp EECCHHHHHHHHHHHHTCEE-EEEESSSSCBCTT---SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCE
T ss_pred EEechhhhhhhHHHHHHhhh-hhhcccccccccc---cccccccchHHHHHHHhCCcccchHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999986 4668899998753 3567778888888888888999999999999999999999999
Q ss_pred EEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 332 SIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 332 ~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
||+||+.|+.| .++|++++.||+|.
T Consensus 233 ~I~~g~~~~~L-~~l~~g~~~GT~i~ 257 (258)
T d1gs5a_ 233 DIASWRHAEQL-PALFNGMPMGTRIL 257 (258)
T ss_dssp EEEESSCGGGH-HHHHTTCCSSEEEC
T ss_pred EEEeCCCchHH-HHHhcCCCCceEEe
Confidence 99999998875 78999999999984
|
| >d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Glutamate 5-kinase species: Campylobacter jejuni [TaxId: 197]
Probab=100.00 E-value=8.7e-33 Score=255.55 Aligned_cols=239 Identities=15% Similarity=0.184 Sum_probs=172.9
Q ss_pred CeEEEEECCcccCCCCh--hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK--DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTMEIVSM 171 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~--~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~~~v~~ 171 (358)
|++||||||+++++++. ...+.+++++|+.+++ |+++|||||||...+. ..+++... .... .+.+..
T Consensus 1 krIViKlGGs~it~k~~~~~~~l~~~~~~I~~l~~-~~~~vIV~gGa~~~G~--~~~~~~~~-----~~~~---~~~~~~ 69 (250)
T d2akoa1 1 KRIVVKVGSHVISEENTLSFERLKNLVAFLAKLME-KYEVILVTSAAISAGH--TKLDIDRK-----NLIN---KQVLAA 69 (250)
T ss_dssp CEEEEEECHHHHBCSSSBCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHH--HHCCCCSS-----SHHH---HHHHHH
T ss_pred CEEEEEeccCeeeCCCCcCHHHHHHHHHHHHHHHc-CCeEEEEEcCcccccc--cccccccc-----hhhh---hhhhhc
Confidence 68999999999999763 2445789999999876 8999999888633322 45565532 1111 222222
Q ss_pred HHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCCCc
Q 018330 172 VLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFGQS 251 (358)
Q Consensus 172 vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G~~ 251 (358)
+....++..+...|.++|+.+... +..... + ..........+.+..+++.+.+||+++......++.
T Consensus 70 ~g~~~~~~~~~~~l~~~~~~~~~~-------l~~~~~-----~-~~~~~~~~~~~~~~~~l~~~~ipv~~~~~~~~~~~~ 136 (250)
T d2akoa1 70 IGQPFLISVYNELLAKFNKLGGQI-------LLTGKD-----F-DSRKATKHAKNAIDMMINLGILPIINENDATAIEEI 136 (250)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEEEE-------EECTGG-----G-GCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCCHHH
T ss_pred ccchhHHHHHHHHhhhcccccccc-------cccccc-----h-hhhhhhhhhhHHHHHHHHhCcccccccCcccccccc
Confidence 222345566778889999886432 221110 1 122223445788999999999999998765566678
Q ss_pred cccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccH--HHHHHHHh---CCCCCCCcHHHHHHHHHH
Q 018330 252 YNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDI--KGVKKMIE---DGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 252 ~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~--~e~~~l~~---~~~vtGGM~~Kv~aA~~a 323 (358)
++.++|++|+++|..++|++|+++|||||||+++| +|+ ++|++|++ ++..++.. ....||||.+|+++|..+
T Consensus 137 ~~~~~D~~A~~lA~~~~a~~li~~tdVdGVyd~dP~~~~~Ak~i~~It~~~~~~~~~~~~~~s~~~tGGM~~Kl~aa~~~ 216 (250)
T d2akoa1 137 VFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFL 216 (250)
T ss_dssp HBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHhcccceeeeccCCCceeeCCCcccccccchhhccccchHHhhhhcccCCCCCCCchHHHHHHHHHH
Confidence 89999999999999999999999999999999865 344 59999987 44444432 123589999999999999
Q ss_pred HHcCCCEEEEEeCCCcchHHHHHHcCC-CCceEEc
Q 018330 324 LAQGVRTASIIDGRVEHSLLLEILTDA-GAGTMIT 357 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~~~Ll~el~~~~-g~GT~I~ 357 (358)
.+.|++ |+|+||+.|++|...+++++ ..||+|.
T Consensus 217 ~~~gi~-v~I~nG~~~~~l~~~l~~~~~~~GTv~~ 250 (250)
T d2akoa1 217 LEHNKK-MFLASGFDLSVAKTFLLEDKQIGGTLFE 250 (250)
T ss_dssp HHTTCE-EEEEESSSCHHHHHHHHSCCCCSSEEEC
T ss_pred HHCCCC-EEEecCCCccHHHHHHhCCCCCCceEeC
Confidence 999997 99999999999877676665 4799984
|
| >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.98 E-value=1.1e-31 Score=244.58 Aligned_cols=214 Identities=20% Similarity=0.308 Sum_probs=158.6
Q ss_pred CeEEEEECCcccCCCCh-hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHH---cCCCccccCCcccCCHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK-DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKR---FGIEPVFRDGLRVTDANTMEIV 169 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~-~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~---~gi~~~~~~g~rvt~~~~~~~v 169 (358)
+++||||||++|++++. .....+++++|+.+++ |+++|||||||.+++.+... ++.. ....+..
T Consensus 1 MrIViKiGGs~l~~~~~~~~~i~~l~~~I~~l~~-~~~~viV~ggG~~~~~~~~~~~~~~~~-----------~~~~~~~ 68 (225)
T d2brxa1 1 MRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSS-----------ETFKDFI 68 (225)
T ss_dssp CEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTCC-----------HHHHHHH
T ss_pred CeEEEEeehhhcCCCCCCHHHHHHHHHHHHHHHc-CCcEEEEECccHHHHHHHHhhhhcchh-----------hHHHHHh
Confidence 57999999999998653 3455788999988866 78999999999988765432 2221 1112222
Q ss_pred HHHHhhhhHHHH-HHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCC
Q 018330 170 SMVLVGRVNKSL-VSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEF 248 (358)
Q Consensus 170 ~~vl~g~ln~~l-v~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~ 248 (358)
+....++|..+ ...|.+.|++.. ..+......+++.+.|||+++..
T Consensus 69 -~~~~~~~~~~~~~~~l~~~~~~~~----------------------------~~~~~~~~~~l~~~~ipv~~~~~---- 115 (225)
T d2brxa1 69 -GIQITRANAMLLIAALREKAYPVV----------------------------VEDFWEAWKAVQLKKIPVMGGTH---- 115 (225)
T ss_dssp -HHHHHHHHHHHHHHHHGGGBCSSC----------------------------BCSHHHHHHHHHTTCBCEECCCS----
T ss_pred -hhhHHHHHHHHHHHHHHhhhcccc----------------------------cccHHHHHHHHHhcccccccCCC----
Confidence 12234556643 446666665531 01234455688999999998731
Q ss_pred CCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCC---CCCCcHHHHHHHHH
Q 018330 249 GQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGK---VGGGMIPKVNCCIR 322 (358)
Q Consensus 249 G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~---vtGGM~~Kv~aA~~ 322 (358)
.+.++|++|+.+|..|+||+|+|+|||||||+++| +|+ ++|++|+++|+.++...+. .+|||..|+ +|..
T Consensus 116 ---~~~~~D~lAa~lA~~l~Ad~lii~TDVdGVyt~dP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~g~gg~~~k~-Aa~~ 191 (225)
T d2brxa1 116 ---PGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPL-AAKI 191 (225)
T ss_dssp ---TTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHH-HHHH
T ss_pred ---CCcchhHHHHHHHHHhCchhhhhhhhhhhhhhcccccccccccceEEecchHHHHhccCccccCCCCcccHH-HHHH
Confidence 23479999999999999999999999999999865 344 5999999999999987553 579999998 7777
Q ss_pred HHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEcC
Q 018330 323 SLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMITG 358 (358)
Q Consensus 323 al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~~ 358 (358)
+.+.|++ ++|+||+.|+.| .++++|+.+||+|.|
T Consensus 192 a~~~gi~-v~I~ng~~~~~l-~~~l~ge~~GT~i~P 225 (225)
T d2brxa1 192 IARSGIK-TIVIGKEDAKDL-FRVIKGDHNGTTIEP 225 (225)
T ss_dssp HHHHTCC-EEEECHHHHTCH-HHHHTTCSSSEEECC
T ss_pred HHHCCCc-EEEEeCCCcchH-HHHHCCCCCCcEecC
Confidence 7888999 999999999997 578999999999987
|
| >d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=9.9e-29 Score=223.78 Aligned_cols=210 Identities=18% Similarity=0.268 Sum_probs=153.7
Q ss_pred CeEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHH---HcCCCccccCCcccCCHHHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLK---RFGIEPVFRDGLRVTDANTMEIVS 170 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~---~~gi~~~~~~g~rvt~~~~~~~v~ 170 (358)
+++|||+||++|+++ .+.+.+++++|+.+++. +++|||||||.+++.+.. ..++.. ...+.+.
T Consensus 1 MrIViKiGgs~l~~~--~~~i~~la~~i~~l~~~-~~~vIVvsgG~~ar~~~~~~~~~~~~~-----------~~~~~~~ 66 (219)
T d2ij9a1 1 MKVVLSLGGSVLSNE--SEKIREFAKTIESVAQQ-NQVFVVVGGGKLAREYIKSARELGASE-----------TFCDYIG 66 (219)
T ss_dssp CEEEEEECSSTTTTC--HHHHHHHHHHHHHHHHH-SEEEEEECCHHHHHHHHHHHHHTTCCH-----------HHHHHHH
T ss_pred CEEEEEecccccCCc--HHHHHHHHHHHHHHHcC-CcEEEEECCCccccchhhhhhhcCccH-----------HHHHHHH
Confidence 589999999999874 34457899999998764 599999999998765433 233321 1122221
Q ss_pred HHHhhhhHHHHH-HHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCCCC
Q 018330 171 MVLVGRVNKSLV-SLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADEFG 249 (358)
Q Consensus 171 ~vl~g~ln~~lv-~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~~G 249 (358)
+. ...+|..+. ..|...+.. ...+......+++.+.+||+.+.
T Consensus 67 ~~-~~~~~~~~~~~~l~~~~~~-----------------------------~~~~~~~~~~l~~~~~v~v~~~~------ 110 (219)
T d2ij9a1 67 IA-ATRLNAMLLISAIPSAAKK-----------------------------VPVDFMEAEELSKLYRVVVMGGT------ 110 (219)
T ss_dssp HH-HHHHHHHHHHHHCTTBCSS-----------------------------CCSSHHHHHHHHTTCSEEEECCC------
T ss_pred HH-HHHhhHHHHHHHhhhccch-----------------------------hhHHHHHHHHHhccCCceEECCC------
Confidence 11 233444332 222222211 22355667889999999987762
Q ss_pred CccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCC--CCCCCcHHHHHHHHHHH
Q 018330 250 QSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDG--KVGGGMIPKVNCCIRSL 324 (358)
Q Consensus 250 ~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~--~vtGGM~~Kv~aA~~al 324 (358)
.-+.++|++|+++|..++||.|+++|||||||+++| +|+ ++|++|+++|+.++...+ ..+|||..|+++|..+.
T Consensus 111 -~~~~stD~laa~vA~~l~Ad~liilTDVDGvYt~dP~~~~~A~~i~~is~~e~~~~~~~~~~~~~gg~~~k~~Aa~~a~ 189 (219)
T d2ij9a1 111 -FPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIE 189 (219)
T ss_dssp -SSSSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHH
T ss_pred -CCCCcccHHHHHHHHHcCchHhhhccCcccccccccccCcccccccccCHHHHHHHhhccCccCCCCCcchHHHHHHHH
Confidence 234579999999999999999999999999999865 354 699999999998886533 46799999999999999
Q ss_pred HcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 325 AQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 325 ~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.|++ ++|++|+ |++| .+++.|+.+||+|.
T Consensus 190 ~~gi~-~~I~~g~-~~ni-~~~l~Ge~vGT~Is 219 (219)
T d2ij9a1 190 RSKIK-TYVILGT-PENI-MKAVKGEAVGTVIA 219 (219)
T ss_dssp HHTCC-EEEEECC-HHHH-HHHHTTCCCSEEEC
T ss_pred HcCCc-EEEecCC-CcHH-HHHHCCCCCceEeC
Confidence 99999 9999996 6776 56889999999984
|
| >d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Neisseria meningitidis [TaxId: 487]
Probab=99.95 E-value=7.8e-26 Score=205.12 Aligned_cols=227 Identities=15% Similarity=0.156 Sum_probs=159.9
Q ss_pred hcCCeEEEEECCcccCCCCh----hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCCccccCCcccCCHHHH
Q 018330 91 FRGKTIVVKYGGAAMKPNQK----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 91 ~~~k~iVIKlGGs~l~~k~~----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~~~~~~g~rvt~~~~~ 166 (358)
++-|++|||+||+++++++. ...+.+++++|+.+++.|+++|+|+||+...+.........+ ....
T Consensus 2 mk~krIViKiGgs~l~~~~~~~i~~~~i~~la~~I~~l~~~g~~vviVssG~~~~~~~~~~~~~~~----------~~~~ 71 (236)
T d1ybda1 2 IKYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMD----------RATA 71 (236)
T ss_dssp CSCSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTSC----------HHHH
T ss_pred CCCCEEEEEECcceecCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccc----------cchh
Confidence 34589999999999987541 345689999999999999999999999877665443322111 1111
Q ss_pred HHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccC
Q 018330 167 EIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAAD 246 (358)
Q Consensus 167 ~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~ 246 (358)
....+......+......+...+........ ... ...........+...++.+.+|++...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 132 (236)
T d1ybda1 72 DYMGMMATVMNALALKDAFETLGIKARVQSA--------LSM--------QQIAETYARPKAIQYLEEGKVVIFAAG--- 132 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEES--------SCB--------SSSCEECCHHHHHHHHHTTCEEEEEST---
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcchhhhhh--------hhh--------hhhhhhHHHHHHHhhhccCceeccccc---
Confidence 1111111111222334445555555433221 100 011134567778888899988887653
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
++..+.|+|.+|+++|..++||.|+++|||||||+.+| +|+ ++++.++++|..+. .+|+|.+| +|..+
T Consensus 133 --~~~~~gdnD~laa~vA~~~~ad~liilTdVdGvy~~dP~~~~~a~~~~~~~~~e~~~~-----g~~~m~~~--Aa~~a 203 (236)
T d1ybda1 133 --TGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK-----NLKVMDAT--AFALC 203 (236)
T ss_dssp --TSSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT-----TCCSSCHH--HHHHH
T ss_pred --cccccccchHHHHHHHHHhCccceeeccCccchhhccccccccceeeccccHHHHHhc-----CchHHHHH--HHHHH
Confidence 24567799999999999999999999999999999865 343 58899998876653 46889665 78888
Q ss_pred HHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 324 LAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+.|++ ++|+||++|++| .++++|+.+||+|+
T Consensus 204 ~~~gi~-v~I~ng~~~~~i-~~~l~Ge~vGTlIh 235 (236)
T d1ybda1 204 RERKLN-IVVFGIAKEGSL-KRVITGEDEGTLVH 235 (236)
T ss_dssp HHTTCC-EEEECTTSTTHH-HHHHHTCSCSEEEE
T ss_pred HHCCCc-EEEEeCCCccHH-HHHHcCCCCCcEeC
Confidence 899999 999999999997 66889999999996
|
| >d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Haemophilus influenzae [TaxId: 727]
Probab=99.95 E-value=2.6e-26 Score=209.10 Aligned_cols=222 Identities=17% Similarity=0.204 Sum_probs=154.2
Q ss_pred CeEEEEECCcccCCCCh----hHHHHHHHHHHHHhHhCCCeEEEEECChHHHh-HHHHHcCCCccccCCcccCCHHHHHH
Q 018330 94 KTIVVKYGGAAMKPNQK----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEIN-FWLKRFGIEPVFRDGLRVTDANTMEI 168 (358)
Q Consensus 94 k~iVIKlGGs~l~~k~~----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~-~~l~~~gi~~~~~~g~rvt~~~~~~~ 168 (358)
|||||||||++|++++. ...+.+++++|+.+++.|+++++|+||+...+ ..+...+.+.. ....
T Consensus 6 kRIViKiGgs~l~~~~~~~i~~~~i~~la~~I~~l~~~g~~vivVssg~~~~~~~~l~~~~~~~~-----------~~~~ 74 (236)
T d2a1fa1 6 KRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRV-----------VGDH 74 (236)
T ss_dssp SEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHH-----------HHHH
T ss_pred cEEEEEEccceecCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecccccchhhhhhhcCCCch-----------hhHH
Confidence 89999999999997541 34568999999999999999999999975443 44444333211 1111
Q ss_pred HHHHHhhhhHHHHHH-HHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccCC
Q 018330 169 VSMVLVGRVNKSLVS-LINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAADE 247 (358)
Q Consensus 169 v~~vl~g~ln~~lv~-~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~~ 247 (358)
.... ....+..+.. .+........... .... ...........+..+++.+.+|++...
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 133 (236)
T d2a1fa1 75 MGML-ATVMNGLAMRDSLFRADVNAKLMS---------AFQL-------NGICDTYNWSEAIKMLREKRVVIFSAG---- 133 (236)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTTCCEEEEE---------SSCC-------TTTSEECCHHHHHHHHHTTCEEEEEST----
T ss_pred HHHH-HHHHHHHHHHHHHHhhccccchhh---------hhhh-------hhhHHHhhhhhhhhhhhhccccccccc----
Confidence 1111 1112222222 2222333322111 1100 111234566778888899999987764
Q ss_pred CCCccccChHHHHHHHHHHcCCCeEEEeecccccccccc--ccC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 018330 248 FGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRE--DPM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSL 324 (358)
Q Consensus 248 ~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~--dp~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al 324 (358)
++..+.|+|.+|+.+|.+++||.|+++|||||||+.+| +|+ +++++++++|+.+ .|+|..|+++|..|.
T Consensus 134 -~~~~~~dnD~laa~vA~~~~Ad~lii~TDVdGvyt~dP~~~~~A~~i~~i~~~e~l~-------~G~~v~k~~Aa~~a~ 205 (236)
T d2a1fa1 134 -TGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVID-------KELKVMDLSAFTLAR 205 (236)
T ss_dssp -TSCSSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHH-------TTCCSSCHHHHHHHH
T ss_pred -ccCCCCCCcHHHHHHHHHhchhHHHHhhcccccccccccccccccccccccHHHHHh-------cCCceeHHHHHHHHH
Confidence 23456699999999999999999999999999999865 344 5899999887655 277888999999999
Q ss_pred HcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 325 AQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 325 ~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+.|++ ++|+||+.|++| .++++|+.+||+|+
T Consensus 206 ~~gi~-v~I~ng~~~~~l-~~~l~Ge~~GTlI~ 236 (236)
T d2a1fa1 206 DHGMP-IRVFNMGKPGAL-RQVVTGTEEGTTIC 236 (236)
T ss_dssp HHTCC-EEEEETTSTTHH-HHHHTCSCSSEEEC
T ss_pred HCCCe-EEEEeCCCCcHH-HHHHcCCCCcceeC
Confidence 99998 999999999997 66889999999996
|
| >d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.92 E-value=1.6e-23 Score=188.88 Aligned_cols=226 Identities=15% Similarity=0.152 Sum_probs=151.8
Q ss_pred cCCeEEEEECCcccCCCCh----hHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHH-cCCCccccCCcccCCHHHH
Q 018330 92 RGKTIVVKYGGAAMKPNQK----DNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKR-FGIEPVFRDGLRVTDANTM 166 (358)
Q Consensus 92 ~~k~iVIKlGGs~l~~k~~----~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~-~gi~~~~~~g~rvt~~~~~ 166 (358)
+.|+||||+||++|++++. ...+.+++++|+.|+..|+++++|+||+...+..... .+.. ....
T Consensus 3 k~krIViKiGgs~lt~~~~~~l~~~~l~~ia~~I~~l~~~g~~Vv~v~~g~~~~~~~~~~~~~~~-----------~~~~ 71 (238)
T d1z9da1 3 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMD-----------RVQA 71 (238)
T ss_dssp SCSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCC-----------HHHH
T ss_pred CCCEEEEEECcceecCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecccccccceeccccCCc-----------chhH
Confidence 3489999999999997642 3456899999999999999999999998766543322 1211 1111
Q ss_pred HHHHHHHhhhhHHHHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcCCccC
Q 018330 167 EIVSMVLVGRVNKSLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIASVAAD 246 (358)
Q Consensus 167 ~~v~~vl~g~ln~~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~gv~~~ 246 (358)
...........+..+...+..+|+.......... . +.. ........+.... ....+.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~------~~~-~~~~~~~~i~~~~-~~~~~~~~~~--- 132 (238)
T d1z9da1 72 DYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPM--------Q------NVA-EPYIRGRALRHLE-KNRIVVFGAG--- 132 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCB--------T------TTB-EECCHHHHHHHHH-TTCEEEEEST---
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhh--------H------HHH-hhhhHHHHHhhhc-cccccceecc---
Confidence 1111221223334455677788887644432110 0 000 0112234444433 3333333332
Q ss_pred CCCCccccChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 018330 247 EFGQSYNINADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRS 323 (358)
Q Consensus 247 ~~G~~~~i~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~a 323 (358)
.+.....+.|.++..+|..++|+.++++|||||+|+.+|. |+ ++++.++..|... ..+++| |+.+|..+
T Consensus 133 -~~~~~~~~~d~~~~~~a~~~~a~~li~~tdVdGvy~~~P~~~~~a~~~~~~~~~~~~~-----~g~~~~--k~~Aa~~a 204 (238)
T d1z9da1 133 -IGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIK-----RGLKIM--DATASTLS 204 (238)
T ss_dssp -TSCTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHT-----TTCCCS--CHHHHHHH
T ss_pred -eeccCCCCchHHHHHHHHHhhhhhhcccccccceecccccccccchhhccccccchhc-----cCcchh--HHHHHHHH
Confidence 2344566899999999999999999999999999998652 33 5888888876443 234555 89999999
Q ss_pred HHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 324 LAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 324 l~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
.+.|++ ++|+||++|++| .++++|+.+||+|+
T Consensus 205 ~~~gi~-v~I~nG~~p~~i-~~~l~Ge~~GTlIt 236 (238)
T d1z9da1 205 MDNDID-LVVFNMNEAGNI-QRVVFGEHIGTTVS 236 (238)
T ss_dssp HHTTCE-EEEEETTSTTHH-HHHHTTCCCSEEEE
T ss_pred HHCCCc-EEEEeCCCcchH-HHHHCCCCCceEec
Confidence 999998 999999999997 56889999999996
|
| >d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=2.1e-20 Score=176.69 Aligned_cols=239 Identities=19% Similarity=0.279 Sum_probs=161.8
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHc------CCC-ccc---cCCc------
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRF------GIE-PVF---RDGL------ 158 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~------gi~-~~~---~~g~------ 158 (358)
+.|.||||+++.+ .+.+.++++-|......+.++|+|.++-..++..|.++ +-. ... .+.+
T Consensus 1 ~tV~KFGGTSvad---ae~i~~V~~II~~~~~~~~~~vVVVSA~ggvTn~L~~~~~~a~~~~~~~~~~~~l~~i~~~h~~ 77 (302)
T d2hmfa1 1 TTVMKFGGTSVGS---GERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYK 77 (302)
T ss_dssp CEEEEECTGGGSS---HHHHHHHHHHHHHHHHHCSCEEEEECCCTTHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCcccCCC---HHHHHHHHHHHHHHHhcCCCEEEEEeCCCCChhHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 4799999999999 65556777776666566788999999944343333221 000 000 0000
Q ss_pred ----ccCCHH----HHHHH-------------------------HHHH-hhhhHH--HHHHHHHHcCCeeEeecCCCccE
Q 018330 159 ----RVTDAN----TMEIV-------------------------SMVL-VGRVNK--SLVSLINKAGATAVGLSGMDGRL 202 (358)
Q Consensus 159 ----rvt~~~----~~~~v-------------------------~~vl-~g~ln~--~lv~~L~~~Gi~av~lsg~d~~l 202 (358)
-+.+.+ ..+.+ ..++ .|++-. .+...|++.|+++..+.+.+..+
T Consensus 78 ~i~~l~~~~~~~~~~~~~i~~~l~~L~~~l~~~~~~~e~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~i 157 (302)
T d2hmfa1 78 AIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGI 157 (302)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEECTTTTTE
T ss_pred HHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHhhhhhhHHhHHHHHHHHHcCCceEEeecccccc
Confidence 001110 00000 0111 244332 34567899999999999888877
Q ss_pred EEeecCCCCCCCCcccceeecC-HHHHHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeec
Q 018330 203 FTARPSPNSDKLGFVGEVARVD-PTVIEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLILLTD 277 (358)
Q Consensus 203 l~a~~~~~~~d~g~~g~v~~i~-~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTD 277 (358)
++....++ ..+.... .+.+..+++.+.|||++| ++.+.+|++.++ ++|+.|+.+|..|+|+++.++||
T Consensus 158 ~t~~~~~~-------a~~~~~~~~~~l~~~~~~~~v~Vv~GFig~~~~G~~ttLgRgGSD~tA~~la~~l~A~~~~i~td 230 (302)
T d2hmfa1 158 ITDNNFGS-------ARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTD 230 (302)
T ss_dssp EECSCTTS-------CCEEEECHHHHHHHHHHTTCEEEEESSEEECTTCCEEECCTTTHHHHHHHHHHHHTCSEEEEEES
T ss_pred ccCCccch-------hhhhhhhhHHHHHHHHhcCCeEEeecccccCCCCCEEEEeccCcccHHHHHHHHhccHHHHHHhc
Confidence 76554331 1223323 567888899999999999 588899998877 89999999999999999999999
Q ss_pred cccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCce
Q 018330 278 VAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGT 354 (358)
Q Consensus 278 V~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT 354 (358)
|+|||+.+|. |+ +.|++++|+|+.+|+..|. .-|.|| +..-+.+.|++ ++|.|... .+..||
T Consensus 231 v~gi~~~dP~~~~~a~~~~~~~y~ea~eLa~~g~--~v~h~~--~~~~~~~~~i~-i~v~~~~~----------~~~~gT 295 (302)
T d2hmfa1 231 VSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGA--KVLHPR--TIEPAMEKGIP-ILVKNTFE----------PESEGT 295 (302)
T ss_dssp SSSCBSSCTTTCTTCCBCSEEEHHHHHHHHHTTC--TTSCGG--GHHHHHHTTCC-EEEEETTS----------TTSCCE
T ss_pred cchhccchhhcCCCceEecccCHHHHHHHHhCCC--cccCHH--HHHHHHHcCCC-EEEeeCCC----------CCCCCC
Confidence 9999998542 33 5899999999999987542 113344 55556678999 99998543 357899
Q ss_pred EEcC
Q 018330 355 MITG 358 (358)
Q Consensus 355 ~I~~ 358 (358)
+|+.
T Consensus 296 ~i~~ 299 (302)
T d2hmfa1 296 LITN 299 (302)
T ss_dssp EEES
T ss_pred EEcC
Confidence 9963
|
| >d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.84 E-value=5.8e-20 Score=173.75 Aligned_cols=161 Identities=16% Similarity=0.240 Sum_probs=118.8
Q ss_pred HHHHHHHHcCCeeEeecCCCccEEEeecCCCCCCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccC-CCCCcccc---
Q 018330 180 SLVSLINKAGATAVGLSGMDGRLFTARPSPNSDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAAD-EFGQSYNI--- 254 (358)
Q Consensus 180 ~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~-~~G~~~~i--- 254 (358)
.+...|++.|+++..+.+.+..+++....++.. ... ..........+..+++.+.|||++| ++.+ ++|++.++
T Consensus 130 ll~~~L~~~gi~a~~~d~~~~~iit~~~~~~a~-~~~-~~~~~~~~~~~~~~~~~~~v~vv~Gfig~~~~~G~~ttLGRg 207 (304)
T d2cdqa1 130 IFAAYLNTIGVKARQYDAFEIGFITTDDFTNGD-ILE-ATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRG 207 (304)
T ss_dssp HHHHHHHHTTCCEEEECGGGTTCEECSCSTTCC-BCT-THHHHHHHHHHHHHHHSCCEEEEESSEEEETTTCCEEECCTT
T ss_pred HHHHHHHHcCCceEEEeeccccccccccccccc-ccc-cchhhhHHHHhhhhhccCcEEEeeccccccCcCCceeeeccC
Confidence 456788999999999998887777765433110 000 0011222445667788999999999 4665 68998877
Q ss_pred ChHHHHHHHHHHcCCCeEEEeeccccccccccc--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEE
Q 018330 255 NADTVAGELAAALGAEKLILLTDVAGILENRED--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTA 331 (358)
Q Consensus 255 ~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v 331 (358)
++|+.|+.+|..|+|+++.+||||||||+.+|. |+ +.|++|+|+|+.+|...| ..-+.|+ +..-+.+.+++ +
T Consensus 208 GSD~TAa~la~~l~A~~~~iwtDV~Gi~taDPr~v~~a~~i~~lsy~EA~ela~~G--akvlHp~--ti~p~~~~~Ip-i 282 (304)
T d2cdqa1 208 GSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGEIP-V 282 (304)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHH--SSCCCHH--HHHHHHHHTCC-E
T ss_pred ccccHHHHHHHHhCchHHHHhcCcchheeccccccCCceEcCccCHHHHHHHHhCC--CcccCHH--HHHHHHHCCCc-E
Confidence 899999999999999999999999999998542 33 589999999999997643 1234455 44556678999 9
Q ss_pred EEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 332 SIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 332 ~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
+|-|-..| +..||+|+
T Consensus 283 ~i~nt~~p----------~~~GT~I~ 298 (304)
T d2cdqa1 283 RVKNSYNP----------KAPGTIIT 298 (304)
T ss_dssp EEEETTST----------TSCCEEEE
T ss_pred EEecCCCC----------CCCCCEEe
Confidence 99985544 56899985
|
| >d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.3e-19 Score=170.47 Aligned_cols=236 Identities=16% Similarity=0.207 Sum_probs=147.3
Q ss_pred eEEEEECCcccCCCChhHHHHHHHHHHHHhHhCCCeEEEEECChHHHhHHHHHcCCC-cc--c--------------cCC
Q 018330 95 TIVVKYGGAAMKPNQKDNLLASVVKDLVLLSVVGLRPVLVHGGGPEINFWLKRFGIE-PV--F--------------RDG 157 (358)
Q Consensus 95 ~iVIKlGGs~l~~k~~~~l~~~~~~~Ia~L~~~G~~vVLVhGgg~~i~~~l~~~gi~-~~--~--------------~~g 157 (358)
++|.||||+++.+ .+.+.++++-| .+.+.++|+|.++-..++..|.++.-. .+ . .+.
T Consensus 2 ~iV~KFGGTSv~~---~~~i~~v~~ii---~~~~~~~vVVVSA~~gvTd~L~~~~~~~~~~~~~~~l~~i~~~h~~~~~~ 75 (292)
T d2j0wa1 2 IVVSKFGGTSVAD---FDAMNRSADIV---LSDANVRLVVLSASAGITNLLVALAEGLEPGERFEKLDAIRNIQFAILER 75 (292)
T ss_dssp CEEEEECSGGGSS---HHHHHHHHHHH---TSCTTEEEEEECCCTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEeeCccccCC---HHHHHHHHHHH---HhcCCCeEEEEeCCCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Confidence 6899999999998 54444544433 245678899999944444444332211 00 0 011
Q ss_pred cccC-------------------------CHHHHHHHHHHHhhhhHH--HHHHHHHHcCCeeEeecCCCccEEEeecCCC
Q 018330 158 LRVT-------------------------DANTMEIVSMVLVGRVNK--SLVSLINKAGATAVGLSGMDGRLFTARPSPN 210 (358)
Q Consensus 158 ~rvt-------------------------~~~~~~~v~~vl~g~ln~--~lv~~L~~~Gi~av~lsg~d~~ll~a~~~~~ 210 (358)
+... .+...+.+ +..|++.. .+...|++.|+++.-+++.+. +++......
T Consensus 76 l~~~~~~~~~l~~~~~~l~~l~~~~~~~~s~~~~d~I--ls~GE~lSa~lla~~L~~~Gi~a~~lda~~~-i~t~~~~~~ 152 (292)
T d2j0wa1 76 LRYPNVIREEIERLLENITVLAEAAALATSPALTDEL--VSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGR 152 (292)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH--HHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCTTS
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhcccChHHHHHH--HhhhHHHhHHHHHHHHHhcCCCccccchhhe-eecCCcccc
Confidence 1100 00001111 11355433 356688999999988887665 333222111
Q ss_pred CCCCCcccceeecCHHHHHHHHhCCCeEEEcC-CccCCCCCcccc---ChHHHHHHHHHHcCCCeEEEeecccccccccc
Q 018330 211 SDKLGFVGEVARVDPTVIEPLVNSGHIPVIAS-VAADEFGQSYNI---NADTVAGELAAALGAEKLILLTDVAGILENRE 286 (358)
Q Consensus 211 ~~d~g~~g~v~~i~~~~I~~lL~~G~IPVi~g-v~~~~~G~~~~i---~sD~~Aa~lA~~L~AdkLi~lTDV~GV~~~~~ 286 (358)
. .... -...+.....+...++.+ |||++| ++.+.+|++.++ ++|+.|+.+|..|+|+++.++|||||||+.+|
T Consensus 153 a-~~~~-~~~~~~~~~~~~~~~~~~-i~Vv~GFig~~~~G~~ttLGRgGSDytAa~~a~~l~A~~v~iwtDV~Gi~taDP 229 (292)
T d2j0wa1 153 A-EPDI-AALAELAALQLLPRLNEG-LVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDP 229 (292)
T ss_dssp C-CBCH-HHHHHHHHHHTHHHHHHS-EEEEESSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCT
T ss_pred c-cchh-hhhhhhhhhhhhhhhccc-ccccccccccccCCceEeeccCcccHHHHHHHHHhhcHHHHHhccCcceeechh
Confidence 0 0000 000111223334444554 899999 678899998877 89999999999999999999999999999854
Q ss_pred c--cC-cccccccHHHHHHHHhCCCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcchHHHHHHcCCCCceEEc
Q 018330 287 D--PM-SLVKEIDIKGVKKMIEDGKVGGGMIPKVNCCIRSLAQGVRTASIIDGRVEHSLLLEILTDAGAGTMIT 357 (358)
Q Consensus 287 d--p~-~lI~~I~~~e~~~l~~~~~vtGGM~~Kv~aA~~al~~Gv~~v~Ii~G~~~~~Ll~el~~~~g~GT~I~ 357 (358)
. |+ +.|++|+|+|+.+|...|. .=+.|| +..-+.+.+++ ++|.|-..| +..||+|+
T Consensus 230 ~~v~~A~~i~~lsy~EA~ela~~Ga--kVlhp~--ti~p~~~~~Ip-i~i~nt~~p----------~~~GT~I~ 288 (292)
T d2j0wa1 230 RVVSAAKRIDEIAFAEAAEMATFGA--KVLHPA--TLLPAVRSDIP-VFVGSSKDP----------RAGGTLVC 288 (292)
T ss_dssp TTCTTCCEESEEEHHHHHHHHHTTC--TTSCTT--THHHHHHHTCC-EEEEESSCT----------TSCCEEEE
T ss_pred hcCCCceEcceeCHHHHHHHHhCCc--cccCHH--HHHHHHHcCCc-EEEeeCCCC----------CCCCCeEe
Confidence 2 32 6999999999999986542 112233 44456678999 999885444 56899986
|