Citrus Sinensis ID: 018336

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MDKQQPKTQFASNTDQSSTMAEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAEYKGLVQSGCCVEI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHccHHHHHHHccccHHHHHHHccccEEEEEEEEcccEEEccccccccccccEEEEEEcccccEEEccccccccccccccEEEEEEccEEEEEccccccccccccEEEEEEcccccEEEccccccccccEEEEEEccEEEEEEccccccccccEEEEEEcccccEEEccccccccccEEEEEEccEEEEEEccccccccccccEEEEEEcccccEEEcccccccccccccEEEEEEccEEEEEEcccccEEEcEEEEEEccEEEEEcccccccccEEEEEEcccccEEEEEccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHHHHHHHHccHHHcHHHHHHHHHHHHHHccHHHHHHHHHccccccEEEEEEEcccccccccccccccccEEEEEccccccEEEcccccccccccccccEEEEEccEEEEEEcccccccccccEEEEEcccccccEEccccccccccEEEEEEccEEEEEEccccccccccEEEEEccccccEEEcccccccccccEEEEEccEEEEEEcccccccccEcccEEEEccccccEEEccccccccccccccEEEEEccEEEEEEccccccEEEEEEEcccccEEEEEEccccccEEEEEEccccccEEEccccHHcccccEEEEEEEc
Coil and Loop (DISEMBL)
mdkqqpktqfasntdqsstmaefgelvpglpeeislECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQrkqsgkthkVACLVqsfpvhsgsgelkpmglsygvtvfdpvsltwdrlgpvpeypaglplfCQVASSQGklvvmggwdpasyspvshvfVYDFttrrwtrgknmpdnrsffaageLNGRViiagghdenktaLSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSgykterqgifdesaesyqlGTGEWKRAENawklsqcprsnvgvgregklFCWAETEAAVQFGTCRvelggctlvtgsgyqggpqefyvvegrngkfrkfdvpaeykglvqsgccvei
Flexible Loop (DISEMBL)
mdkqqpktqfasntdqsstmAEFGELVPGLPEEISLECLTRLHYSthrvatrvsrrwrQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTrrwtrgknmpdnrsfFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDvpaeykglvqsgccvei
Low Complexity Region (SEG)
MDKQQPKTQFASNTDQSSTMAEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAEYKGLVQSGCCVEI
Disordered region (IsUnstruct)
************************ELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAEYKGLVQSGCCV**
Disordered Region (DISOPRED)
****************************GLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAEYKGLVQSGCCVEI
Disordered Region (DISEMBL)
******************TMAEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQ********KVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAEYKGLVQSGCCVEI
Disordered Region (DISPRO)
************************ELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAEYKGLVQSGCCVEI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKQQPKTQFASNTDQSSTMAEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAEYKGLVQSGCCVEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
O80582	409	F-box/kelch-repeat protei	yes	no	0.756	0.662	0.36	2e-47
Q9LMR5	359	F-box/kelch-repeat protei	no	no	0.930	0.927	0.339	3e-46
Q9M8L2	354	F-box/kelch-repeat protei	no	no	0.670	0.677	0.403	1e-45
Q9M1Y1	418	F-box/kelch-repeat protei	no	no	0.765	0.655	0.351	4e-42
Q93W93	434	F-box/kelch-repeat protei	no	no	0.675	0.557	0.281	6e-18
Q9CAG8	376	F-box/kelch-repeat protei	no	no	0.729	0.694	0.252	6e-16
Q8LAW2	372	F-box protein AFR OS=Arab	no	no	0.715	0.688	0.267	8e-16
Q9C6Z0	398	F-box/kelch-repeat protei	no	no	0.628	0.565	0.236	9e-16
Q9M1W7	352	F-box/kelch-repeat protei	no	no	0.625	0.636	0.271	1e-15
Q8L736	467	F-box/kelch-repeat protei	no	no	0.650	0.498	0.248	1e-14

>sp|O80582|FBK46_ARATH F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana GN=At2g44130 PE=2 SV=2

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/300 (36%), Positives = 159/300 (53%), Gaps = 29/300 (9%)

Query: 25  ELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQ 84
           EL+PGLP E++LECL R+ +        V R WR L+    F  +R++ GKT  + CLVQ
Sbjct: 18  ELIPGLPSELALECLVRVPFQFQSAMRSVCRSWRSLLSDSSFIQERRRCGKTELLLCLVQ 77

Query: 85  SF--PVHSGSGELKPMGLS-----------------YGVTVFDPVSLTWDRLGPVPEYPA 125
               P+ +     + + +                  +G++V++    TW R+   PE   
Sbjct: 78  PLTPPIPASKSVDETLMVDEKKSEDESHPRVFCTPRFGLSVYNAAMSTWHRVA-FPE-EE 135

Query: 126 GLPLFCQ--VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAG 183
            +PLFC+  V    GK++++GGWDP +  P   V+V +F  R+W RG  M ++RSFFA  
Sbjct: 136 QIPLFCECVVLQDAGKILLIGGWDPETLQPTRDVYVLEFAGRKWRRGAPMKESRSFFACA 195

Query: 184 ELN-GRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECE--AVVIGSEFWVV 240
            ++  +V +AGGHD+ K AL SA  YD+ KDEW+ +  MT+ RDEC+  AV +G  F V+
Sbjct: 196 SVSPTKVYVAGGHDDQKNALRSAEVYDVEKDEWSSVTPMTEGRDECQGFAVGMGLRFCVL 255

Query: 241 SGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQC-PRSNVG--VGREGKLFCWAETE 297
           SGY TE QG F    E Y   T  W R +N W+     PR            L+C+ +T+
Sbjct: 256 SGYGTESQGRFRSDGEIYDPATDSWSRIDNVWRFPDTSPRGRTAGDFRSSSTLWCFTDTD 315

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMR5|FK126_ARATH F-box/kelch-repeat protein At1g15670 OS=Arabidopsis thaliana GN=At1g15670 PE=2 SV=1

 Score =  186 bits (471), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 176/359 (49%), Gaps = 26/359 (7%)

Query: 25  ELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQ 84
           EL+P LPE ++ ECL R  Y    +   V + W++ I   DF+  RK SG + ++  L Q
Sbjct: 2   ELIPDLPETVAYECLLRSSYKQFPLMASVCKLWQREISLSDFFRHRKASGHSQELVVLSQ 61

Query: 85  SF--PVHS-GSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLV 141
           +   PV    SG        Y ++V +  +     L PVP +  GLPLFC++ S    LV
Sbjct: 62  ARVDPVKELVSGNKTIPTPVYRISVLELGTGLRSELPPVPGHSNGLPLFCRLVSVGSDLV 121

Query: 142 VMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN-RSFFAAGELNGR-VIIAGGHDENK 199
           V+ G DP ++     VFV+ F T  W  GK+MP   RSFFA    + R V +AGGHDE+K
Sbjct: 122 VLCGLDPVTWRTSDSVFVFSFLTSTWRVGKSMPGGPRSFFACASDSQRNVFVAGGHDEDK 181

Query: 200 TALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQ 259
            A+ SA  YD+ +D W  L  M +ERDEC A+    +F V+ GY TE QG F ++AES+ 
Sbjct: 182 NAMMSALVYDVAEDRWAFLPDMGRERDECTAIFHAGKFHVIGGYSTEEQGQFSKTAESFD 241

Query: 260 LGTGEWK-------------------RAENAWKLSQCPRSNVGVGREGKLFCWAETEAAV 300
           + T  W                      EN   L  C R ++ + ++   +      A V
Sbjct: 242 VTTWRWSPQGEEFLSSEMTMWPPICAAGENG-DLYACCRRDLMMMKDDTWYKVGNLPADV 300

Query: 301 -QFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAEYKGLVQSGCCVEI 358
                  +   G  +V GS   G P   Y  +  N ++ K +   +Y+G VQ+GC +EI
Sbjct: 301 CNVSYVAIRRSGNLVVIGSARYGEPSVGYNWDMSNSRWLKLETHDKYEGHVQAGCFLEI 359

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M8L2|FBK30_ARATH F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana GN=At1g80440 PE=2 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 140/243 (57%), Gaps = 3/243 (1%)

Query: 25  ELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQ 84
           EL+P LP++++ ECL R  Y    V   V R W + +    F +QRK S  + ++  L Q
Sbjct: 2   ELIPNLPDDVARECLLRSSYQQFPVIASVCRAWNREVSLSQFLHQRKASRHSQELLILSQ 61

Query: 85  SFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMG 144
           +    +GSG++      Y ++V +  S  W  L P+P    GLPLFC++ S    L+V+G
Sbjct: 62  ARVDPAGSGKIIATP-EYRISVLESGSGLWTELPPIPGQTKGLPLFCRLVSVGSDLIVLG 120

Query: 145 GWDPASYSPVSHVFVYDFTTRRWTRGKNMPD-NRSFFAAGELNGR-VIIAGGHDENKTAL 202
           G DP ++     VFV+ F T +W  G  MP   RSFF     + R V++AGGH+E K AL
Sbjct: 121 GLDPITWQAHDSVFVFSFLTSKWRVGATMPGVRRSFFGCASDSDRTVLVAGGHNEEKCAL 180

Query: 203 SSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGT 262
           +SA  YD+ +D+WT L  M +ERDEC+AV     F V+ GY TE QG F ++AES+ + T
Sbjct: 181 TSAMVYDVSEDKWTFLPDMARERDECKAVFHAGRFHVIGGYATEEQGQFSKTAESFDVST 240

Query: 263 GEW 265
            EW
Sbjct: 241 WEW 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1Y1|SKI20_ARATH F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana GN=SKIP20 PE=1 SV=1

 Score =  172 bits (435), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 114/324 (35%), Positives = 158/324 (48%), Gaps = 50/324 (15%)

Query: 24  GELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLV 83
           G+L+PGLPEE+++ECL R+ +  H     V R W+ +I SR F  +R   GK   + CLV
Sbjct: 13  GDLIPGLPEELAIECLVRVPFQFHSSIKSVCRSWKCVISSRSFIKERIGFGKAESLLCLV 72

Query: 84  QSF-----PVHSGSGELKPMGLS----------------------YGVTVFDPVSLTWDR 116
           Q       P     GE+                            YG++V++    TW R
Sbjct: 73  QPLTSPPSPAMMEGGEMSQKKKEEEEGESQMTQQLLQPRITGTPLYGLSVYNATLDTWHR 132

Query: 117 LGPVPEYPAGLPLFCQVASSQ--GKLVVMGGWDPASYSPVSHVFVYDF-----TTRRWTR 169
           +      P  +PLFC+  + Q  GK++++GGWDP +  PV  VFV DF     + RR+ R
Sbjct: 133 VA----IPERIPLFCECVAIQDAGKVLLIGGWDPETLQPVRDVFVLDFFAGEGSGRRFRR 188

Query: 170 GKNMPDNRSFFAAGELNG-RVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDEC 228
           G+ M   RSFFA   +   +V +AGGHD+ K AL SA  YD+ KDEW+ L  MT+ RDEC
Sbjct: 189 GRPMSAARSFFACASVGSTKVYVAGGHDDQKNALRSAEVYDVEKDEWSMLPPMTEGRDEC 248

Query: 229 EAVVIGSE--FWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQC-PRSNVGVG 285
               + ++  F V+SGY TE QG F    E Y   T  W   EN W      PR      
Sbjct: 249 HGFSMATDPGFCVLSGYGTETQGQFRSDGEIYDPITNSWSTIENVWPFPDLSPRGRTAAA 308

Query: 286 --------REGKLFCWAETEAAVQ 301
                   R  +L+C+ ++E   Q
Sbjct: 309 AAEFPGDFRGCRLWCFIDSERQSQ 332

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W93|FBK22_ARATH F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 115/263 (43%), Gaps = 21/263 (7%)

Query: 5   QPKTQFASNTDQSSTMAEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSR 64
            P      N+ +  T  +   L+PGLP+++++ CL R+  + HR    V +RW +L    
Sbjct: 58  NPNAHRRKNSKRERTRIQ-PPLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGN 116

Query: 65  DFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVP-EY 123
            FY QRK  G + +   + +        G++           FDP+S  W  L PVP EY
Sbjct: 117 FFYSQRKLLGMSEEWVYVFK----RDRDGKI-------SWNTFDPISQLWQPLPPVPREY 165

Query: 124 PAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAG 183
              +   C V S    L + GG DP   S +  V  Y+  T +W R  +M   R FF   
Sbjct: 166 SEAVGFGCAVLSG-CHLYLFGGKDPLRGS-MRRVIFYNARTNKWHRAPDMLRKRHFFGCC 223

Query: 184 ELNGRVIIAGGHDEN-KTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSG 242
            +N  + +AGG  E  +  L SA  YD  K+ W+ +A M+        VV   + W + G
Sbjct: 224 VINNCLYVAGGECEGIQRTLRSAEVYDPNKNRWSFIADMSTAMVPLIGVVYDKK-WFLKG 282

Query: 243 YKTERQGIFDESAESYQLGTGEW 265
             + +  +    +E+Y      W
Sbjct: 283 LGSHQLVM----SEAYDPEVNSW 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 130/285 (45%), Gaps = 24/285 (8%)

Query: 13  NTDQSSTMAE-FGE--LVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQ 69
           N D  S ++E F +  L+PGLP++++ +CL  +  +       V ++WR ++QS++F   
Sbjct: 23  NLDLGSRLSENFMDDPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITV 82

Query: 70  RKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPL 129
           R+ +G   +    +    +++G  + +          ++ +     +L  +P  P     
Sbjct: 83  RRLAGMLEE---WLYVLTMNAGGKDNR----------WEVMDCLGQKLSSLPPMPGPAKT 129

Query: 130 FCQVASSQGKLVVMGGWDPASYSPVS--HVFVYDFTTRRWTRGKNMPDNRSFFAAGELNG 187
             +V    GKL+V+ G    + S V+   V+ YD     W+R  ++   R  FA  E+NG
Sbjct: 130 GFKVVVVDGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAEVNG 189

Query: 188 RVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTER 247
            V + GGH  +  +LSSA  YD     WT +  + + R  C A     + +V+ G     
Sbjct: 190 HVYVVGGHGVDGESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYVMGGRSNFT 249

Query: 248 QGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFC 292
            G   +  + Y    G W  ++N   +     ++V VG+  KLFC
Sbjct: 250 IG-NSKLLDVYNTQCGSWHGSKNGLTMVT---AHVEVGK--KLFC 288

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAW2|AFR_ARATH F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2

 Score = 85.1 bits (209), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 119/280 (42%), Gaps = 24/280 (8%)

Query: 1   MDKQQPKTQFASNTDQSS--TMAEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWR 58
           M +Q+  +   +  DQ+   T  +   L+ GLP +I+  CL RL Y  H +   VS  W 
Sbjct: 1   MAEQETTSNINTINDQAEEETRTKSQPLISGLPNDIAELCLLRLPYPYHALYRSVSSSWN 60

Query: 59  QLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLG 118
           + I +  F +  KQS         V +F   +   + + + L+ G          W  L 
Sbjct: 61  KTITNPRFLFS-KQSLSISSPYLFVFAFNKSTARIQWQSLDLASG---------RWFVLP 110

Query: 119 PVP----EYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMP 174
           P+P    +  +   L C     QGKL V+GG D  + S V    VY   T RW+    M 
Sbjct: 111 PMPNSFTKISSPHALSCASMPRQGKLFVLGGGD-VNRSAV----VYTALTNRWSCISPMM 165

Query: 175 DNRSFFAAGELNGRVIIAGGH-DENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI 233
             R++F +G +NG+++  GG    N  A +   +YD   D WT + ++     + ++ VI
Sbjct: 166 SPRTYFVSGNVNGKIMAVGGSVGGNGEATTEVESYDPDNDTWTVVKKLPMVLAKYDSAVI 225

Query: 234 GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWK 273
           G E  V  G+      +F    + Y    G W+      K
Sbjct: 226 GKEMCVTEGWAWPF--MFPPMGQVYDSDEGTWREMSGGMK 263

Component of SCF (ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyls elongation in response to red and far-red light exposure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6Z0|FBK17_ARATH F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 103/241 (42%), Gaps = 16/241 (6%)

Query: 26  LVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQS 85
           L+PGLP++++L CL R+   +H  +  V +RW  L  +++ ++ +++          V  
Sbjct: 53  LIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVVG 112

Query: 86  FPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS--SQGKLVVM 143
           F   +G  + K         V D  +LTW  +  +P      P   +  S   +G + V 
Sbjct: 113 FSRCTGKIQWK---------VLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREGTMFVC 163

Query: 144 GGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALS 203
           GG    S  P+  V  YD     WT    M   RSFFA+G ++G +  AGG+  +   L 
Sbjct: 164 GGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYELD 223

Query: 204 SAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSG-----YKTERQGIFDESAESY 258
            A   + +   W  ++ M       +  V+  +  V  G     + + R  ++D   + +
Sbjct: 224 CAEVLNPLDGNWRPVSNMVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTDQW 283

Query: 259 Q 259
           +
Sbjct: 284 E 284

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1W7|SKI30_ARATH F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 111/258 (43%), Gaps = 34/258 (13%)

Query: 26  LVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQS 85
           L+ G+PE ++L CL  +    H     VSR WR  I+S + +  RK+   +  + C+   
Sbjct: 11  LLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVCAF 70

Query: 86  FPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGG 145
            P +                V+ P    W  L  +P     L  F  V ++ G L V+GG
Sbjct: 71  DPENIWQ-------------VYSPNCDRWLTLPLLPSRIRHLAHFGAVTTA-GMLFVLGG 116

Query: 146 WDPASYSPVS----------HVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGH 195
              A  SPV+           V+ YDF  R+WT   +M   R+ FA   L G++++AGG 
Sbjct: 117 GSDA-VSPVTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGF 175

Query: 196 DENKTALSSAWAYDLIKDEWTELARMTQERDE-CEAVVIGSEFWVVSGYKTERQGIFDES 254
              + ++S A  YD   D WT +  + Q  +  C  +V+  +  V+    +  Q +    
Sbjct: 176 TTCRKSISGAEMYDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVL---- 231

Query: 255 AESYQLGTGEWKRAENAW 272
            ES +LG   W   +  W
Sbjct: 232 -ESVKLG---WDVKDYGW 245

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L736|SKI11_ARATH F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 110/270 (40%), Gaps = 37/270 (13%)

Query: 3   KQQPKTQFASNTDQSSTMAEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQ 62
           +Q+ ++ F  N   SS   +   L+  +  + S++CL R   S +     ++R +R L++
Sbjct: 97  EQEQQSDFNDNGGDSS---DSHSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVK 153

Query: 63  SRDFYYQRKQSGKTHK---VACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGP 119
           S + Y  R+Q+G        +C +  +                    FDPV   W +L  
Sbjct: 154 SGEIYRLRRQNGFVEHWVYFSCQLLEW------------------VAFDPVERRWMQL-- 193

Query: 120 VPEYPAGLPLFCQVASSQG---KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN 176
            P  P+ +   C    S      L+V+G  D +S+     ++ Y   T  W+ G  M   
Sbjct: 194 -PTMPSSVTFMCADKESLAVGTDLLVLGKDDFSSHV----IYRYSLLTNSWSSGMKMNSP 248

Query: 177 RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSE 236
           R  F +  L    I AGG D     L  A  Y+     W  L RM + R  C  V +  +
Sbjct: 249 RCLFGSASLGEIAIFAGGCDSQGKILDFAEMYNSELQTWITLPRMNKPRKMCSGVFMDGK 308

Query: 237 FWVVSGY-KTERQGIFDESAESYQLGTGEW 265
           F+V+ G    + +G+     E Y L T +W
Sbjct: 309 FYVIGGIGGADSKGL--TCGEEYDLETKKW 336

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
224091544	337	f-box family protein [Populus trichocarp	0.932	0.991	0.650	1e-133
359482148	355	PREDICTED: F-box/kelch-repeat protein At	0.946	0.954	0.644	1e-128
147803378	343	hypothetical protein VITISV_015116 [Viti	0.946	0.988	0.644	1e-128
255581552	337	Protein AFR, putative [Ricinus communis]	0.927	0.985	0.617	1e-121
449448824	347	PREDICTED: F-box/kelch-repeat protein At	0.944	0.974	0.578	1e-117
224052968	345	predicted protein [Populus trichocarpa]	0.938	0.973	0.582	1e-115
224073168	345	f-box family protein [Populus trichocarp	0.932	0.968	0.578	1e-114
315440441	345	f-box family protein [Cicer arietinum] g	0.930	0.965	0.556	1e-108
356512487	385	PREDICTED: F-box/kelch-repeat protein At	0.955	0.888	0.547	1e-107
357518839	341	F-box/kelch-repeat protein [Medicago tru	0.932	0.979	0.560	1e-106

>gi|224091544|ref|XP_002309282.1| f-box family protein [Populus trichocarpa] gi|222855258|gb|EEE92805.1| f-box family protein [Populus trichocarpa]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 218/335 (65%), Positives = 276/335 (82%), Gaps = 1/335 (0%)

Query: 25  ELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQ 84
           EL+P LP+EI+LECL RLHY+THRVA++V +RWR ++QSRDFYYQRKQ+G THK ACL+Q
Sbjct: 3   ELIPSLPDEIALECLFRLHYTTHRVASQVCKRWRPVLQSRDFYYQRKQNGLTHKAACLIQ 62

Query: 85  SFPVHSGSGELKPMGL-SYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVM 143
           + P  +GS + KP+G   YGV++FD V+ +WDR+ PVP YP GLPLFCQV SS+GKLV++
Sbjct: 63  AIPDQNGSSQPKPIGPPKYGVSIFDSVNGSWDRVDPVPAYPDGLPLFCQVTSSEGKLVLL 122

Query: 144 GGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALS 203
           GGWDP  Y P+S VFVY+FTTR+W RGK+MP+NRSFFA GELNGR+IIAGGHDENK AL 
Sbjct: 123 GGWDPVKYEPLSQVFVYEFTTRQWRRGKDMPENRSFFAVGELNGRIIIAGGHDENKNALK 182

Query: 204 SAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTG 263
           +AW YD+I+DEW EL +M+QERDECE VVIGSEFWVVSGY+T+ QG F+ SAES +LG  
Sbjct: 183 TAWVYDVIQDEWAELPQMSQERDECEGVVIGSEFWVVSGYRTDSQGGFEGSAESIELGAS 242

Query: 264 EWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG 323
           +WKR E+AWK SQCPRS++GVG + KLF WAE+++A++ G   V LG  T V+GS ++GG
Sbjct: 243 KWKRVEDAWKASQCPRSSLGVGSDEKLFSWAESDSALKVGASSVHLGEKTFVSGSAHEGG 302

Query: 324 PQEFYVVEGRNGKFRKFDVPAEYKGLVQSGCCVEI 358
           PQ F++V+G+NGK+ K +V  E+ G VQSGCCVEI
Sbjct: 303 PQGFFLVDGQNGKWEKLNVTGEFCGFVQSGCCVEI 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482148|ref|XP_002281267.2| PREDICTED: F-box/kelch-repeat protein At2g44130 [Vitis vinifera]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/343 (64%), Positives = 268/343 (78%), Gaps = 4/343 (1%)

Query: 20  MAEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKV 79
           MA+F EL+PGLPEEI+LEC TRL Y++HRVA +V RRW +L+Q ++FYY RKQ+G THK 
Sbjct: 13  MAQFTELIPGLPEEIALECFTRLPYTSHRVAAQVCRRWGELLQGKEFYYLRKQTGFTHKA 72

Query: 80  ACLVQSFPVHSGSGELKPM-GLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQG 138
           ACLVQ+ PV S S   KP+   SYG++VFD VS TW+R+ PVP+YP GLPLFCQV SS+G
Sbjct: 73  ACLVQALPVLSESDGRKPVRPPSYGISVFDSVSRTWERIAPVPKYPDGLPLFCQVTSSEG 132

Query: 139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDEN 198
           KLVVMGGWDP SY PV  VFVYDFTTRRW +G++MP  RSFFAAGEL GR+ +AGGHD++
Sbjct: 133 KLVVMGGWDPESYDPVKDVFVYDFTTRRWKQGRDMPSKRSFFAAGELEGRIFVAGGHDDS 192

Query: 199 KTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESY 258
           K ALS+AW YD+ +DEW+EL RM+ ERDEC+ VVIGSEFWVVSGY TE QG F +SAES 
Sbjct: 193 KNALSTAWVYDVRRDEWSELTRMSDERDECQGVVIGSEFWVVSGYGTESQGGFVKSAESL 252

Query: 259 QLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGS 318
            L TG W R + AW  +QCPRS VGVG++GKLF WAE++ AV  G C V+LG  TL+TGS
Sbjct: 253 DLETGRWSRVDEAWGTNQCPRSCVGVGKDGKLFSWAESDTAVGVGACAVDLGDWTLLTGS 312

Query: 319 GYQGGPQEFYVV---EGRNGKFRKFDVPAEYKGLVQSGCCVEI 358
            YQG PQ F++V   EG+NGK  + +V   + G VQSGCCVEI
Sbjct: 313 AYQGAPQGFFLVERKEGQNGKLERIEVGDGFSGFVQSGCCVEI 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147803378|emb|CAN71047.1| hypothetical protein VITISV_015116 [Vitis vinifera]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/343 (64%), Positives = 268/343 (78%), Gaps = 4/343 (1%)

Query: 20  MAEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKV 79
           MA+F EL+PGLPEEI+LEC TRL Y++HRVA +V RRW +L+Q ++FYY RKQ+G THK 
Sbjct: 1   MAQFTELIPGLPEEIALECFTRLPYTSHRVAAQVCRRWGELLQGKEFYYXRKQTGFTHKA 60

Query: 80  ACLVQSFPVHSGSGELKPM-GLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQG 138
           ACLVQ+ PV S S   KP+   SYG++VFD VS TW+R+ PVP+YP GLPLFCQV SS+G
Sbjct: 61  ACLVQALPVLSESDGRKPVRPPSYGISVFDSVSRTWERIAPVPKYPDGLPLFCQVTSSEG 120

Query: 139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDEN 198
           KLVVMGGWDP SY PV  VFVYDFTTRRW +G++MP  RSFFAAGEL GR+ +AGGHD++
Sbjct: 121 KLVVMGGWDPESYDPVKDVFVYDFTTRRWKQGRDMPSKRSFFAAGELEGRIFVAGGHDDS 180

Query: 199 KTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESY 258
           K ALS+AW YD+ +DEW+EL RM+ ERDEC+ VVIGSEFWVVSGY TE QG F +SAES 
Sbjct: 181 KNALSTAWVYDVRRDEWSELTRMSDERDECQGVVIGSEFWVVSGYGTESQGGFVKSAESL 240

Query: 259 QLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGS 318
            L TG W R + AW  +QCPRS VGVG++GKLF WAE++ AV  G C V+LG  TL+TGS
Sbjct: 241 DLETGRWSRVDEAWGTNQCPRSCVGVGKDGKLFSWAESDTAVGVGACAVDLGDWTLLTGS 300

Query: 319 GYQGGPQEFYVV---EGRNGKFRKFDVPAEYKGLVQSGCCVEI 358
            YQG PQ F++V   EG+NGK  + +V   + G VQSGCCVEI
Sbjct: 301 AYQGAPQGFFLVERKEGQNGKLERIEVGDGFSGFVQSGCCVEI 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581552|ref|XP_002531581.1| Protein AFR, putative [Ricinus communis] gi|223528777|gb|EEF30784.1| Protein AFR, putative [Ricinus communis]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/337 (61%), Positives = 262/337 (77%), Gaps = 5/337 (1%)

Query: 25  ELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQ 84
           EL+P LPEEI+L+CLTRLHY+TH VA+RV + W  L+QS+ FYY RKQS +THK ACL+Q
Sbjct: 3   ELIPDLPEEIALDCLTRLHYTTHPVASRVCKNWNHLLQSKHFYYHRKQSSQTHKAACLIQ 62

Query: 85  SFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMG 144
             P  S S  + P    YGVT+ DP++  W+R  PVPEYP GLPLFCQV SS+GKL+V+G
Sbjct: 63  LLPAISASKPVCPP--RYGVTLCDPINGIWERFEPVPEYPDGLPLFCQVTSSEGKLLVIG 120

Query: 145 GWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSS 204
           GWDP SY PVS+VFVYDF T  W +GK+MP++RSFFA GELNGRVIIAGGH+ NKTALSS
Sbjct: 121 GWDPVSYEPVSYVFVYDFITGIWRQGKDMPESRSFFAVGELNGRVIIAGGHNMNKTALSS 180

Query: 205 AWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE 264
           AW+YD+ +DEWTEL RM+QERDECE VVIGSEFWVVSGY+T+ QG F+ SAE  + G  E
Sbjct: 181 AWSYDVSQDEWTELPRMSQERDECEGVVIGSEFWVVSGYQTDSQGRFEGSAEVIESGASE 240

Query: 265 WKRAENAWK---LSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQ 321
           W+R E+AWK   +++ P+S +GV + GKL  WAE ++ V+FG C V+ G   LV+GS YQ
Sbjct: 241 WRRVEDAWKDAAVNRSPKSCIGVDKGGKLLSWAEADSEVKFGACGVQSGEWALVSGSAYQ 300

Query: 322 GGPQEFYVVEGRNGKFRKFDVPAEYKGLVQSGCCVEI 358
           GG Q F++ EG++GK+++ +VP E+ G VQSGC VEI
Sbjct: 301 GGAQGFFLKEGQDGKWKRLNVPEEFSGFVQSGCSVEI 337

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448824|ref|XP_004142165.1| PREDICTED: F-box/kelch-repeat protein At2g44130-like [Cucumis sativus]

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/342 (57%), Positives = 258/342 (75%), Gaps = 4/342 (1%)

Query: 21  AEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVA 80
           + F E +PGLPEE+SL+C+TRL Y++HR+A+ V RRW+QLI S DFYY R++SG T  ++
Sbjct: 6   SNFTEFIPGLPEELSLDCITRLPYTSHRLASAVCRRWQQLISSPDFYYHRRKSGATTLLS 65

Query: 81  CLVQSFP-VHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGK 139
           C +Q+ P   S +G      L+YG+TVFD +S +WDR+  +P+YP GLPLFC +AS++GK
Sbjct: 66  CFIQALPPAFSTTGWKLCTSLAYGLTVFDSLSQSWDRIPSIPQYPDGLPLFCHIASTEGK 125

Query: 140 LVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENK 199
           LV+MGGWDPA+Y P+  VFVYDFT   W +GK+MP  RSFFA G  +GRV I+GGHDE+K
Sbjct: 126 LVLMGGWDPATYDPIIDVFVYDFTQGAWRKGKDMPSKRSFFAIGASDGRVYISGGHDESK 185

Query: 200 TALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQ 259
            AL SAW YDL  DEWTEL +M+Q RDECE +++G EFWVVSGY TERQG+FD SAE Y 
Sbjct: 186 NALKSAWVYDLRTDEWTELPQMSQGRDECEGLMVGREFWVVSGYDTERQGMFDASAEVYD 245

Query: 260 LGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSG 319
           L +GEW+  + AW+  +CPR+ +G+ ++GKL  W+E+  AV+ G C + +G  TLVTGS 
Sbjct: 246 LDSGEWRVVDQAWEEGRCPRACIGMDKDGKLTNWSESAPAVRVGACGMVMGSRTLVTGSE 305

Query: 320 YQGGPQEFYVVE---GRNGKFRKFDVPAEYKGLVQSGCCVEI 358
           YQGGPQ FYV+E   G+NGK RK +VP EY G VQSGCCVE+
Sbjct: 306 YQGGPQNFYVMEGEGGQNGKMRKINVPEEYGGYVQSGCCVEV 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052968|ref|XP_002297641.1| predicted protein [Populus trichocarpa] gi|222844899|gb|EEE82446.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/340 (58%), Positives = 249/340 (73%), Gaps = 4/340 (1%)

Query: 23  FGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACL 82
           F E +P LP+E+ LEC+TRL Y+ HRVA++V ++WR+L++S+DFYY RK+ G THKVACL
Sbjct: 6   FTEFIPSLPQELGLECMTRLPYTAHRVASQVCKQWRELLESKDFYYHRKKLGYTHKVACL 65

Query: 83  VQSFPVHSGSGELKP-MGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLV 141
           VQ+      S   KP    S+G+TVFD VS TW RL PVP+YP GLPLFCQ+AS +GKLV
Sbjct: 66  VQAAHRADVSQGSKPGNSPSFGITVFDSVSQTWQRLDPVPKYPNGLPLFCQLASCEGKLV 125

Query: 142 VMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTA 201
           VMGGWDP SY  VSHVFVYDFTTR+W  GK MP  RSFFA G  +GR+ + GGHDENK A
Sbjct: 126 VMGGWDPVSYEQVSHVFVYDFTTRKWREGKEMPSKRSFFAIGAYSGRIYVVGGHDENKNA 185

Query: 202 LSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLG 261
           L + W YDL K+EWTEL +M+QERDECE VVIG EFW VSGY+T+ QG F+ESAE Y+  
Sbjct: 186 LKTGWVYDLSKEEWTELNQMSQERDECEGVVIGDEFWAVSGYRTDNQGEFEESAEVYEFR 245

Query: 262 TGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQ 321
           +G+W+R + AW   +CPRS+VG G++G+L  WA+ + AV+     +  G   +V GS   
Sbjct: 246 SGQWRRVKEAWIPGRCPRSSVGAGKDGRLMSWADLDPAVRVAVRGIMFGFRVMVAGSDSP 305

Query: 322 GGPQEFYVVE---GRNGKFRKFDVPAEYKGLVQSGCCVEI 358
           G PQ FY+VE   G+NG+  K +VP E+ G VQSGCCVEI
Sbjct: 306 GAPQGFYMVEMKDGQNGQLEKINVPEEFSGFVQSGCCVEI 345

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073168|ref|XP_002304005.1| f-box family protein [Populus trichocarpa] gi|222841437|gb|EEE78984.1| f-box family protein [Populus trichocarpa]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/342 (57%), Positives = 249/342 (72%), Gaps = 8/342 (2%)

Query: 23  FGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACL 82
           F EL+P LP+E+ LEC+TRL Y+ HRVA++V ++W  L++S+DFYY RK+ G THKVACL
Sbjct: 6   FTELIPSLPQELGLECMTRLPYTAHRVASQVCKQWCDLLESKDFYYHRKKLGYTHKVACL 65

Query: 83  VQSFPVHSGS---GELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGK 139
           VQ+  VH      G  +     +G++VFD  S TW+RL PVP YP  LPLFCQ+AS +GK
Sbjct: 66  VQA--VHGADVLQGSKQGNSPCFGISVFDSASQTWERLDPVPNYPIELPLFCQLASCEGK 123

Query: 140 LVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENK 199
           LVVMGGWDP SY  VSHVFVYDFTTR+W  GK MP  RSFFA G  +GRV + GGHDENK
Sbjct: 124 LVVMGGWDPVSYEQVSHVFVYDFTTRKWREGKEMPSKRSFFAIGSYSGRVYVVGGHDENK 183

Query: 200 TALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQ 259
            AL + W YDL KDEWTELA+M+QERDECE VVIG EFWVVSGY T+ QG F+ +AE Y+
Sbjct: 184 NALRTGWVYDLSKDEWTELAQMSQERDECEGVVIGDEFWVVSGYGTDNQGAFEGNAEVYE 243

Query: 260 LGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSG 319
            G+G+W++ + AW   +CPRS VGVG++G+L  WA+ +  V+ G   + LG   ++TG  
Sbjct: 244 FGSGQWRQVKKAWIPGRCPRSCVGVGKDGRLMSWADLDPMVRAGVRGIPLGSRVMLTGLD 303

Query: 320 YQGGPQEFYVVE---GRNGKFRKFDVPAEYKGLVQSGCCVEI 358
            QG P+EFY++E   G+NGK  K  VP E+ G VQSGCCVEI
Sbjct: 304 NQGSPEEFYLIEMKDGQNGKLEKIIVPDEFSGFVQSGCCVEI 345

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315440441|gb|ADU20205.1| f-box family protein [Cicer arietinum] gi|315440447|gb|ADU20208.1| f-box family protein [Cicer arietinum]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/345 (55%), Positives = 247/345 (71%), Gaps = 12/345 (3%)

Query: 21  AEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVA 80
           ++F  L+PGLP E+ LECLTRL +S HRVA RV  +WR+L+QS +FY+ RK++G T KVA
Sbjct: 6   SDFIGLIPGLPSELGLECLTRLPHSAHRVALRVCNQWRRLLQSDEFYHHRKKTGHTKKVA 65

Query: 81  CLVQSFPVHSGSGELKPMGL---SYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQ 137
           CLVQ+      S   KP G    SY +TVFDP +++WDR+ PVPEYP+GLPLFC +AS +
Sbjct: 66  CLVQAHEQPRQSEAEKPTGSTQPSYDITVFDPENMSWDRVDPVPEYPSGLPLFCHLASCE 125

Query: 138 GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDE 197
           GKLVVMGGWDP+SY P++ VFVYDF T  W RGK+MP+ RSFFA G  +GRV +AGGHDE
Sbjct: 126 GKLVVMGGWDPSSYGPLTAVFVYDFRTNVWRRGKDMPEMRSFFATGSGHGRVYVAGGHDE 185

Query: 198 NKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAES 257
           NK AL++AWAYD   DEWT +A M++ERDECE VV+G EFWVVSGY TE QG+FD SAE 
Sbjct: 186 NKNALNTAWAYDPRSDEWTAVAPMSEERDECEGVVVGGEFWVVSGYGTESQGMFDGSAEV 245

Query: 258 YQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTG 317
             +G+G+W++ E  W+  +CPRS V +   G++      +  ++ G C V +G  +LVTG
Sbjct: 246 LDIGSGQWRKVEGVWEAGRCPRSCVDMRENGRVM-----DPGLRIGVCSVRVGSRSLVTG 300

Query: 318 SGYQGGPQEFYVVEGRNGKFRKF----DVPAEYKGLVQSGCCVEI 358
           S Y+G P  FY+VE  +G+ RK      VP  + G VQSGCCVEI
Sbjct: 301 SEYEGAPYGFYLVENEDGQKRKLIKIRTVPDGFSGFVQSGCCVEI 345

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512487|ref|XP_003524950.1| PREDICTED: F-box/kelch-repeat protein At1g15670-like [Glycine max]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/349 (54%), Positives = 242/349 (69%), Gaps = 7/349 (2%)

Query: 13  NTDQSSTMAEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQ 72
           + +  S + +F +L+P LP E+ LECLTRL +S HRVA RV  +W  L+QS  FY  RK+
Sbjct: 41  DNNTISDLIQFNDLIPKLPSELGLECLTRLPHSAHRVALRVCSQWHCLLQSDAFYSHRKK 100

Query: 73  SGKTHKVACLVQSF---PVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPL 129
           +G T KV CLVQ+    P+   +     +   YG++VFDP S+TWDR+ PVP+YP+GLPL
Sbjct: 101 TGHTRKVTCLVQAREDQPLQEKNN--ASVASVYGISVFDPESMTWDRVDPVPDYPSGLPL 158

Query: 130 FCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRV 189
           FCQ+AS  GKLV+MGGWDPASY P++ VFVYDF T  W RGK+MP+ RSFFA G   GRV
Sbjct: 159 FCQLASCDGKLVLMGGWDPASYEPLTAVFVYDFRTSEWRRGKDMPEKRSFFAIGAGVGRV 218

Query: 190 IIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQG 249
            +AGGHDENK ALS+AWAYD   DEW  L  M +ERDECE VVIG EFWVVSGY TERQG
Sbjct: 219 YVAGGHDENKNALSTAWAYDPRSDEWAGLDPMGRERDECEGVVIGDEFWVVSGYSTERQG 278

Query: 250 IFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVEL 309
           +FD SAE   +G+G W+     W+  QCPRS VGVG++G+L  W   +  ++ G C V +
Sbjct: 279 MFDGSAEVLDIGSGGWREENGFWEEGQCPRSCVGVGKDGRLVNWRGWDPGLRVGVCGVAV 338

Query: 310 GGCTLVTGSGYQGGPQEFYVVEGRNGKFRKFDVPAEYKGLVQSGCCVEI 358
           G   +++GS Y+G P  FY+V+ R  K  K +VP  + G VQSGCCVEI
Sbjct: 339 GSRVVLSGSDYEGAPHGFYLVDNR--KLTKINVPEGFSGFVQSGCCVEI 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518839|ref|XP_003629708.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355523730|gb|AET04184.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/346 (56%), Positives = 237/346 (68%), Gaps = 12/346 (3%)

Query: 20  MAEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKV 79
           M EF EL+PGLP E+ LECLTRL  S+HRVA RV  +WR+L  S +FY  RK +G T KV
Sbjct: 1   MDEFIELIPGLPSELGLECLTRLSNSSHRVALRVCNQWRRLFLSDEFYSHRKNTGHTRKV 60

Query: 80  ACLVQSFPVHSGSGELKPMGL---SYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS 136
           ACLVQ+      S   K  G    SY +TVFDP S++WDR+ PVPEYP+GLPLFCQ+ S 
Sbjct: 61  ACLVQAHEQQPHSEFDKQTGSTPPSYDITVFDPESMSWDRVDPVPEYPSGLPLFCQLTSC 120

Query: 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHD 196
           +GKLVVMGGWDPASY P++ VFVYDF    W RGK+MP+ RSFFA G    RV +AGGHD
Sbjct: 121 EGKLVVMGGWDPASYEPLTAVFVYDFRMNIWWRGKDMPEKRSFFATGSGYDRVFVAGGHD 180

Query: 197 ENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAE 256
           ENK AL +AWAYD   DEWT LA M+Q+RDECE  V+G EFWVVSGY TE QG+FD+SAE
Sbjct: 181 ENKNALKTAWAYDPKIDEWTMLAPMSQDRDECEGTVVGGEFWVVSGYATESQGMFDDSAE 240

Query: 257 SYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVT 316
              +G+G+W+R E  W+  +CPRS V +   GK+      +  ++ G C V +G    VT
Sbjct: 241 VLDIGSGQWRRVEGVWEAGRCPRSCVDIRENGKV-----VDPGLRIGVCSVRVGSRKWVT 295

Query: 317 GSGYQGGPQEFYVVEGRNGKFRKFD----VPAEYKGLVQSGCCVEI 358
           GS Y+G P  FY+VE   G+ RK +    VP  + G VQSGCCVEI
Sbjct: 296 GSEYEGAPYGFYLVENDEGQNRKLNKISSVPDGFAGFVQSGCCVEI 341

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2051879	409	AT2G44130 "AT2G44130" [Arabido	0.541	0.474	0.406	8.7e-51
TAIR|locus:2198958	354	AT1G80440 "AT1G80440" [Arabido	0.670	0.677	0.403	6e-48
TAIR|locus:2036119	359	AT1G15670 "AT1G15670" [Arabido	0.667	0.665	0.399	9.8e-48
TAIR|locus:2080432	418	AT3G59940 "AT3G59940" [Arabido	0.547	0.468	0.388	1.1e-46
TAIR|locus:2035696	434	AT1G55270 "AT1G55270" [Arabido	0.796	0.656	0.283	6.1e-19
TAIR|locus:2046683	372	AFR "ATTENUATED FAR-RED RESPON	0.723	0.696	0.267	4.6e-16
TAIR|locus:2008773	376	AT1G67480 "AT1G67480" [Arabido	0.729	0.694	0.252	1.5e-15
TAIR|locus:2030601	475	AT1G22040 "AT1G22040" [Arabido	0.405	0.305	0.289	2.4e-15
TAIR|locus:2198304	398	AT1G30090 "AT1G30090" [Arabido	0.586	0.527	0.276	4e-14
TAIR|locus:2077299	352	AT3G63220 "AT3G63220" [Arabido	0.622	0.633	0.277	7.5e-14

TAIR|locus:2051879 AT2G44130 "AT2G44130" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 8.7e-51, Sum P(2) = 8.7e-51
 Identities = 83/204 (40%), Positives = 119/204 (58%)

Query:   102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQ--VASSQGKLVVMGGWDPASYSPVSHVFV 159
             +G++V++    TW R+   PE    +PLFC+  V    GK++++GGWDP +  P   V+V
Sbjct:   114 FGLSVYNAAMSTWHRVA-FPEEEQ-IPLFCECVVLQDAGKILLIGGWDPETLQPTRDVYV 171

Query:   160 YDFTTRRWTRGKNMPDNRSFFAAGELNG-RVIIAGGHDENKTALSSAWAYDLIKDEWTEL 218
              +F  R+W RG  M ++RSFFA   ++  +V +AGGHD+ K AL SA  YD+ KDEW+ +
Sbjct:   172 LEFAGRKWRRGAPMKESRSFFACASVSPTKVYVAGGHDDQKNALRSAEVYDVEKDEWSSV 231

Query:   219 ARMTQERDECE--AVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQ 276
               MT+ RDEC+  AV +G  F V+SGY TE QG F    E Y   T  W R +N W+   
Sbjct:   232 TPMTEGRDECQGFAVGMGLRFCVLSGYGTESQGRFRSDGEIYDPATDSWSRIDNVWRFPD 291

Query:   277 C-PRSNV-GVGREGK-LFCWAETE 297
               PR    G  R    L+C+ +T+
Sbjct:   292 TSPRGRTAGDFRSSSTLWCFTDTD 315

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2198958 AT1G80440 "AT1G80440" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
 Identities = 98/243 (40%), Positives = 141/243 (58%)

Query:    25 ELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQ 84
             EL+P LP++++ ECL R  Y    V   V R W + +    F +QRK S  + ++  L Q
Sbjct:     2 ELIPNLPDDVARECLLRSSYQQFPVIASVCRAWNREVSLSQFLHQRKASRHSQELLILSQ 61

Query:    85 SFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMG 144
             +    +GSG++      Y ++V +  S  W  L P+P    GLPLFC++ S    L+V+G
Sbjct:    62 ARVDPAGSGKIIATP-EYRISVLESGSGLWTELPPIPGQTKGLPLFCRLVSVGSDLIVLG 120

Query:   145 GWDPASYSPVSHVFVYDFTTRRWTRGKNMPD-NRSFFA-AGELNGRVIIAGGHDENKTAL 202
             G DP ++     VFV+ F T +W  G  MP   RSFF  A + +  V++AGGH+E K AL
Sbjct:   121 GLDPITWQAHDSVFVFSFLTSKWRVGATMPGVRRSFFGCASDSDRTVLVAGGHNEEKCAL 180

Query:   203 SSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGT 262
             +SA  YD+ +D+WT L  M +ERDEC+AV     F V+ GY TE QG F ++AES+ + T
Sbjct:   181 TSAMVYDVSEDKWTFLPDMARERDECKAVFHAGRFHVIGGYATEEQGQFSKTAESFDVST 240

Query:   263 GEW 265
              EW
Sbjct:   241 WEW 243

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2036119 AT1G15670 "AT1G15670" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
 Identities = 99/248 (39%), Positives = 140/248 (56%)

Query:    25 ELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQ 84
             EL+P LPE ++ ECL R  Y    +   V + W++ I   DF+  RK SG + ++  L Q
Sbjct:     2 ELIPDLPETVAYECLLRSSYKQFPLMASVCKLWQREISLSDFFRHRKASGHSQELVVLSQ 61

Query:    85 SF--PVH---SGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGK 139
             +   PV    SG+  + P  + Y ++V +  +     L PVP +  GLPLFC++ S    
Sbjct:    62 ARVDPVKELVSGNKTI-PTPV-YRISVLELGTGLRSELPPVPGHSNGLPLFCRLVSVGSD 119

Query:   140 LVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN-RSFFA-AGELNGRVIIAGGHDE 197
             LVV+ G DP ++     VFV+ F T  W  GK+MP   RSFFA A +    V +AGGHDE
Sbjct:   120 LVVLCGLDPVTWRTSDSVFVFSFLTSTWRVGKSMPGGPRSFFACASDSQRNVFVAGGHDE 179

Query:   198 NKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAES 257
             +K A+ SA  YD+ +D W  L  M +ERDEC A+    +F V+ GY TE QG F ++AES
Sbjct:   180 DKNAMMSALVYDVAEDRWAFLPDMGRERDECTAIFHAGKFHVIGGYSTEEQGQFSKTAES 239

Query:   258 YQLGTGEW 265
             + + T  W
Sbjct:   240 FDVTTWRW 247

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080432 AT3G59940 "AT3G59940" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
 Identities = 85/219 (38%), Positives = 118/219 (53%)

Query:   102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQ--GKLVVMGGWDPASYSPVSHVFV 159
             YG++V++    TW R+  +PE    +PLFC+  + Q  GK++++GGWDP +  PV  VFV
Sbjct:   118 YGLSVYNATLDTWHRVA-IPER---IPLFCECVAIQDAGKVLLIGGWDPETLQPVRDVFV 173

Query:   160 YDF-----TTRRWTRGKNMPDNRSFFAAGELNG-RVIIAGGHDENKTALSSAWAYDLIKD 213
              DF     + RR+ RG+ M   RSFFA   +   +V +AGGHD+ K AL SA  YD+ KD
Sbjct:   174 LDFFAGEGSGRRFRRGRPMSAARSFFACASVGSTKVYVAGGHDDQKNALRSAEVYDVEKD 233

Query:   214 EWTELARMTQERDECEAVVIGSE--FWVVSGYKTERQGIFDESAESYQLGTGEWKRAENA 271
             EW+ L  MT+ RDEC    + ++  F V+SGY TE QG F    E Y   T  W   EN 
Sbjct:   234 EWSMLPPMTEGRDECHGFSMATDPGFCVLSGYGTETQGQFRSDGEIYDPITNSWSTIENV 293

Query:   272 WKLSQC-PRSNVGVG--------REGKLFCWAETEAAVQ 301
             W      PR              R  +L+C+ ++E   Q
Sbjct:   294 WPFPDLSPRGRTAAAAAEFPGDFRGCRLWCFIDSERQSQ 332

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035696 AT1G55270 "AT1G55270" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 6.1e-19, P = 6.1e-19
 Identities = 90/317 (28%), Positives = 140/317 (44%)

Query:     6 PKTQFASNTDQSSTMAEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRD 65
             P      N+ +  T  +   L+PGLP+++++ CL R+  + HR    V +RW +L     
Sbjct:    59 PNAHRRKNSKRERTRIQ-PPLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNF 117

Query:    66 FYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVP-EYP 124
             FY QRK  G + +    V  F      G++     S+    FDP+S  W  L PVP EY 
Sbjct:   118 FYSQRKLLGMSEE---WVYVFK-RDRDGKI-----SWNT--FDPISQLWQPLPPVPREYS 166

Query:   125 AGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE 184
               +   C V S    L + GG DP   S +  V  Y+  T +W R  +M   R FF    
Sbjct:   167 EAVGFGCAVLSGC-HLYLFGGKDPLRGS-MRRVIFYNARTNKWHRAPDMLRKRHFFGCCV 224

Query:   185 LNGRVIIAGGHDEN-KTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGY 243
             +N  + +AGG  E  +  L SA  YD  K+ W+ +A M+        VV   + W + G 
Sbjct:   225 INNCLYVAGGECEGIQRTLRSAEVYDPNKNRWSFIADMSTAMVPLIGVVYDKK-WFLKGL 283

Query:   244 KTERQGIFDESAESYQLGTGEWKRAENA----WKLSQCPRSN---VGVG-REG-KLFCWA 294
              + +  +    +E+Y      W    +     W+ + C   N    G+  R+G KL  + 
Sbjct:   284 GSHQLVM----SEAYDPEVNSWSPVSDGMVAGWR-NPCTSLNGRLYGLDCRDGCKLRVFD 338

Query:   295 E-TEAAVQFGTCRVELG 310
             E T++  +F   +  LG
Sbjct:   339 ESTDSWNKFMDSKAHLG 355

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2046683 AFR "ATTENUATED FAR-RED RESPONSE" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 4.6e-16, P = 4.6e-16
 Identities = 74/277 (26%), Positives = 120/277 (43%)

Query:     1 MDKQQPKTQFASNTDQSS--TMAEFGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWR 58
             M +Q+  +   +  DQ+   T  +   L+ GLP +I+  CL RL Y  H +   VS  W 
Sbjct:     1 MAEQETTSNINTINDQAEEETRTKSQPLISGLPNDIAELCLLRLPYPYHALYRSVSSSWN 60

Query:    59 QLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVT-VFDPVSLTWDRL 117
             + I +  F +  KQS         V +F   +   + + + L+ G   V  P+  ++ ++
Sbjct:    61 KTITNPRFLFS-KQSLSISSPYLFVFAFNKSTARIQWQSLDLASGRWFVLPPMPNSFTKI 119

Query:   118 GPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNR 177
                P       L C     QGKL V+GG D  + S V    VY   T RW+    M   R
Sbjct:   120 SS-PH-----ALSCASMPRQGKLFVLGGGD-VNRSAV----VYTALTNRWSCISPMMSPR 168

Query:   178 SFFAAGELNGRVIIAGGH-DENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSE 236
             ++F +G +NG+++  GG    N  A +   +YD   D WT + ++     + ++ VIG E
Sbjct:   169 TYFVSGNVNGKIMAVGGSVGGNGEATTEVESYDPDNDTWTVVKKLPMVLAKYDSAVIGKE 228

Query:   237 FWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWK 273
               V  G+      +F    + Y    G W+      K
Sbjct:   229 MCVTEGWAWPF--MFPPMGQVYDSDEGTWREMSGGMK 263

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009585 "red, far-red light phototransduction" evidence=IMP

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2008773 AT1G67480 "AT1G67480" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 72/285 (25%), Positives = 131/285 (45%)

Query:    13 NTDQSSTMAE-FGE--LVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQ 69
             N D  S ++E F +  L+PGLP++++ +CL  +  +       V ++WR ++QS++F   
Sbjct:    23 NLDLGSRLSENFMDDPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITV 82

Query:    70 RKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPL 129
             R+ +G   +   ++    +++G  + +          ++ +     +L  +P  P     
Sbjct:    83 RRLAGMLEEWLYVLT---MNAGGKDNR----------WEVMDCLGQKLSSLPPMPGPAKT 129

Query:   130 FCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTT--RRWTRGKNMPDNRSFFAAGELNG 187
               +V    GKL+V+ G    + S V+   VY + T    W+R  ++   R  FA  E+NG
Sbjct:   130 GFKVVVVDGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAEVNG 189

Query:   188 RVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTER 247
              V + GGH  +  +LSSA  YD     WT +  + + R  C A     + +V+ G     
Sbjct:   190 HVYVVGGHGVDGESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYVMGGRSNFT 249

Query:   248 QGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFC 292
              G   +  + Y    G W  ++N   +     ++V VG+  KLFC
Sbjct:   250 IGN-SKLLDVYNTQCGSWHGSKNGLTMVT---AHVEVGK--KLFC 288

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2030601 AT1G22040 "AT1G22040" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
 Identities = 46/159 (28%), Positives = 70/159 (44%)

Query:   108 DPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRW 167
             DPVS  W RL P+P           V   + +  + G W+  + S      V  F  RR 
Sbjct:   114 DPVSTKWQRLPPMPVV---------VYEEESRKSLSGLWNMITPSFNVGAIVRSFLGRR- 163

Query:   168 TRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDE 227
                + MP      A G ++G + + GG   +KT +S  W +D I + W+E++ M   R  
Sbjct:   164 DSSEQMPFCGC--AIGAVDGGLYVIGGLSRSKT-VSCVWRFDPILNSWSEVSSMLASRAY 220

Query:   228 CEAVVIGSEFWVVSGYKTERQGIFD-ESAESYQLGTGEW 265
              +  V+  + +VV G    R G+   +SAE Y   T  W
Sbjct:   221 SKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAW 259

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2198304 AT1G30090 "AT1G30090" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 4.0e-14, P = 4.0e-14
 Identities = 62/224 (27%), Positives = 101/224 (45%)

Query:    24 GE-LVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRD-FYYQRKQSGKTHKVAC 81
             GE L+PGLP++++L CL R+   +H  +  V +RW  L  +++ F+ +RK+ G       
Sbjct:    50 GEPLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLF 109

Query:    82 LVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPL-FCQVASS-QGK 139
             +V  F   +G  + K         V D  +LTW  +  +P      P  F  V+   +G 
Sbjct:   110 VV-GFSRCTGKIQWK---------VLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREGT 159

Query:   140 LVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENK 199
             + V GG    S  P+  V  YD     WT    M   RSFFA+G ++G +  AGG+  + 
Sbjct:   160 MFVCGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADL 219

Query:   200 TALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGY 243
               L  A   + +   W  ++ M       +  V+  +  V  G+
Sbjct:   220 YELDCAEVLNPLDGNWRPVSNMVAHMASYDTAVLNGKLLVTEGW 263

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077299 AT3G63220 "AT3G63220" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 7.5e-14, P = 7.5e-14
 Identities = 72/259 (27%), Positives = 112/259 (43%)

Query:    26 LVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQS 85
             L+ G+PE ++L CL  +    H     VSR WR  I+S + +  RK+   +  + C+   
Sbjct:    11 LLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVCAF 70

Query:    86 FPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGG 145
              P +                V+ P    W  L  +P     L  F  V ++ G L V+GG
Sbjct:    71 DPENIWQ-------------VYSPNCDRWLTLPLLPSRIRHLAHFGAVTTA-GMLFVLGG 116

Query:   146 WDPASYSPVS--H--------VFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGH 195
                A  SPV+  H        V+ YDF  R+WT   +M   R+ FA   L G++++AGG 
Sbjct:   117 GSDA-VSPVTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGF 175

Query:   196 DENKTALSSAWAYDLIKDEWTELARMTQERDE-CEAVVIGSEFWVV-SGYKTERQGIFDE 253
                + ++S A  YD   D WT +  + Q  +  C  +V+  +  V+  G  T       +
Sbjct:   176 TTCRKSISGAEMYDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTV------Q 229

Query:   254 SAESYQLGTGEWKRAENAW 272
               ES +LG   W   +  W
Sbjct:   230 VLESVKLG---WDVKDYGW 245

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009062 "fatty acid catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
pfam01344	46	pfam01344, Kelch_1, Kelch motif	6e-08
smart00612	47	smart00612, Kelch, Kelch domain	7e-07
pfam01344	46	pfam01344, Kelch_1, Kelch motif	8e-07
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	1e-06
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	2e-06
pfam00646	48	pfam00646, F-box, F-box domain	2e-06
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	3e-06
smart00612	47	smart00612, Kelch, Kelch domain	3e-05
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	3e-05
PHA02713	557	PHA02713, PHA02713, hypothetical protein; Provisio	3e-05
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	8e-05
pfam13964	50	pfam13964, Kelch_6, Kelch motif	9e-05
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	1e-04
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	2e-04
pfam12937	47	pfam12937, F-box-like, F-box-like	4e-04
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	0.003
pfam13964	50	pfam13964, Kelch_6, Kelch motif	0.004

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 177 RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMT 222
           RS      L G++ + GG+D    +LSS   YD   + W++L  M 
Sbjct: 2   RSGAGVVVLGGKIYVIGGYDGG-QSLSSVEVYDPETNTWSKLPSMP 46

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 45.2 bits (108), Expect = 7e-07
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNG 187
           K+ V+GG+D      +  V VYD  T +WT   +MP  RS      +NG
Sbjct: 1   KIYVVGGFDGGQR--LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47

Length = 47

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 133 VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMP 174
           V    GK+ V+GG+D       S V VYD  T  W++  +MP
Sbjct: 7   VVVLGGKIYVIGGYDGGQSL--SSVEVYDPETNTWSKLPSMP 46

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 16/146 (10%)

Query: 143 MGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTAL 202
           +GG +  +   V+ V  YD  T+ W +   +   R        N R+ + GG   N  +L
Sbjct: 300 IGGMNKNNL-SVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIY-NSISL 357

Query: 203 SSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESA---ESYQ 259
           ++  ++   + +W E   +   R     V + +  +V+ G         DE     E + 
Sbjct: 358 NTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISK-----NDELLKTVECFS 412

Query: 260 LGTGEWKRAENAWKLSQCPRSNVGVG 285
           L T +W       K S  P S+ G  
Sbjct: 413 LNTNKW------SKGSPLPISHYGGC 432

Length = 534

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI 233
            G++ + GG  +  T L+  W YDL  + W +L  +   R    A VI
Sbjct: 1   GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48

Length = 48

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 30 LPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFY 67
          LP+++ LE L+RL        + VS+RWR L+ S   +
Sbjct: 6  LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLW 43

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 43.2 bits (103), Expect = 3e-06
 Identities = 17/41 (41%), Positives = 25/41 (60%)

Query: 30 LPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQR 70
          LP+EI  E L++L         +VSR+WR LI S DF+++ 
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 188 RVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG 234
           ++ + GG D     L S   YD   ++WT L  M   R      VI 
Sbjct: 1   KIYVVGGFD-GGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46

Length = 47

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 36/167 (21%), Positives = 68/167 (40%), Gaps = 14/167 (8%)

Query: 104 VTVFDPVSLTWDRLGPV--PEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYD 161
           V  + P    W    P+  P Y         V +    + V+GG    +   +  V  + 
Sbjct: 360 VESWKPGESKWREEPPLIFPRYNPC------VVNVNNLIYVIGGIS-KNDELLKTVECFS 412

Query: 162 FTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGG--HDENKTALSSAWAYDLIKDEWTELA 219
             T +W++G  +P +     A   +G++ + GG  + +N    +   +Y+ + ++WTEL+
Sbjct: 413 LNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472

Query: 220 RMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWK 266
            +   R      +  ++ +VV G K E     +E  E Y   T  W 
Sbjct: 473 SLNFPRINASLCIFNNKIYVVGGDKYEYY--INEI-EVYDDKTNTWT 516

Length = 534

>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 157 VFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWT 216
           + VY+  T  ++    +P++   +A+  ++  +IIAGG++ N  +L+  +  ++      
Sbjct: 274 ILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV 333

Query: 217 ELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWK 266
           EL  M + R      VI    + + G   +     + + E Y +G  +WK
Sbjct: 334 ELPPMIKNRCRFSLAVIDDTIYAIGG---QNGTNVERTIECYTMGDDKWK 380

Length = 557

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 177 RSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM 221
           R++  +  + +GR+ + GG +E+ + LS  W +DL  + WT L  +
Sbjct: 2   RAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47

Length = 49

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 128 PLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNR 177
                  S  GK+ V GG+   S    + V VYD  T  W +   +P  R
Sbjct: 2   RTGHSAVSVGGKIYVFGGYSNGSK-ASNKVLVYDPETGSWEKLPPLPTPR 50

Length = 50

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 133 VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPD 175
            +   G+L + GG +    S +S V+V+D +T  WTR  ++P 
Sbjct: 8   TSIGDGRLYLFGGENE-DGSVLSDVWVFDLSTNTWTRLPSLPS 49

Length = 49

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 28/141 (19%), Positives = 49/141 (34%), Gaps = 15/141 (10%)

Query: 147 DPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAW 206
              S    +++  Y   +   T           F +  LN  +   GG ++N  +++S  
Sbjct: 257 ITMSIFTYNYITNYSPLSEINTIIDI--HYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVV 314

Query: 207 AYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWK 266
           +YD     W ++  +   R      V  +  +V+ G       I   + ES       WK
Sbjct: 315 SYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGG---IYNSISLNTVES-------WK 364

Query: 267 RAENAWKLS---QCPRSNVGV 284
             E+ W+       PR N  V
Sbjct: 365 PGESKWREEPPLIFPRYNPCV 385

Length = 534

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 30 LPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQ 69
          LP+EI L+  + L          V RRWR+L      + +
Sbjct: 4  LPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRR 43

This is an F-box-like family. Length = 47

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 138 GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAA 182
           GK+ V GG      + ++ ++VYD  T  W +  ++P  R+  AA
Sbjct: 2   GKIYVFGGLGD-GGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAA 45

Length = 48

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 177 RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQER 225
           R+  +A  + G++ + GG+     A +    YD     W +L  +   R
Sbjct: 2   RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50

Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
PLN02193	470	nitrile-specifier protein	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PHA03098	534	kelch-like protein; Provisional	99.98
PLN02153	341	epithiospecifier protein	99.97
PLN02193	470	nitrile-specifier protein	99.97
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.97
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.97
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.97
PHA02790	480	Kelch-like protein; Provisional	99.97
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.97
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.96
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.94
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.93
KOG1230	521	consensus Protein containing repeated kelch motifs	99.92
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.91
KOG1230	521	consensus Protein containing repeated kelch motifs	99.9
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.86
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.8
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.73
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.6
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.4
PF13964	50	Kelch_6: Kelch motif	99.29
PF13964	50	Kelch_6: Kelch motif	99.24
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.09
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.02
PF13415	49	Kelch_3: Galactose oxidase, central domain	99.0
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.96
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.96
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.92
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.88
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.88
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.86
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.84
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.76
smart00612	47	Kelch Kelch domain.	98.73
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.72
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	98.71
smart00612	47	Kelch Kelch domain.	98.71
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.65
PLN02772	398	guanylate kinase	98.59
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.54
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.46
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.42
PF13854	42	Kelch_5: Kelch motif	98.4
PLN02772	398	guanylate kinase	98.31
PF13854	42	Kelch_5: Kelch motif	98.3
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.03
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.93
PF03089	337	RAG2: Recombination activating protein 2; InterPro	97.56
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.56
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.34
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.3
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.2
PF12768	281	Rax2: Cortical protein marker for cell polarity	97.18
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.03
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.97
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.95
PF03089	337	RAG2: Recombination activating protein 2; InterPro	96.91
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.81
PF12768	281	Rax2: Cortical protein marker for cell polarity	96.48
KOG2997	366	consensus F-box protein FBX9 [General function pre	96.47
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.38
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.26
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	96.14
PRK04792	448	tolB translocation protein TolB; Provisional	95.6
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.36
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	95.28
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.24
KOG2055	514	consensus WD40 repeat protein [General function pr	95.16
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	95.1
KOG2055	514	consensus WD40 repeat protein [General function pr	95.05
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	94.91
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.91
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	94.81
PRK04792	448	tolB translocation protein TolB; Provisional	94.75
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	94.5
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	93.93
PRK00178	430	tolB translocation protein TolB; Provisional	93.85
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	93.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	93.44
PRK05137	435	tolB translocation protein TolB; Provisional	93.36
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	93.29
PRK04922	433	tolB translocation protein TolB; Provisional	93.22
smart00284	255	OLF Olfactomedin-like domains.	92.88
PRK04043	419	tolB translocation protein TolB; Provisional	92.87
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	92.63
PRK04922	433	tolB translocation protein TolB; Provisional	92.59
PRK05137	435	tolB translocation protein TolB; Provisional	92.42
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	92.33
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	92.31
PRK00178	430	tolB translocation protein TolB; Provisional	92.2
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	92.18
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	92.03
smart00284	255	OLF Olfactomedin-like domains.	91.87
KOG0289	506	consensus mRNA splicing factor [General function p	91.69
PRK03629	429	tolB translocation protein TolB; Provisional	91.43
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	91.33
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	91.06
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	90.94
KOG0316	307	consensus Conserved WD40 repeat-containing protein	90.84
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	90.58
KOG0310	487	consensus Conserved WD40 repeat-containing protein	90.45
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	90.32
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	89.22
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	88.2
PRK13684	334	Ycf48-like protein; Provisional	88.11
PRK02889	427	tolB translocation protein TolB; Provisional	88.11
PRK04043	419	tolB translocation protein TolB; Provisional	87.53
PRK03629	429	tolB translocation protein TolB; Provisional	87.45
PRK11028	330	6-phosphogluconolactonase; Provisional	86.35
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	86.13
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	85.39
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	85.2
COG4946	668	Uncharacterized protein related to the periplasmic	84.45
PTZ00421	493	coronin; Provisional	83.81
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	83.07
PLN00181	793	protein SPA1-RELATED; Provisional	82.87
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	82.54
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	81.01
PTZ00420	568	coronin; Provisional	80.27
KOG0310	487	consensus Conserved WD40 repeat-containing protein	80.24

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=5.9e-40  Score=308.65  Aligned_cols=307  Identities=23%  Similarity=0.367  Sum_probs=237.9

Q ss_pred             CCCCcHHHHHHHhccCCcch-hhhH---HhhcHhHHHhhcChh-hHHHHHhcC-CccceEEEEeeccCCCCCCCCCCCCC
Q 018336           27 VPGLPEEISLECLTRLHYST-HRVA---TRVSRRWRQLIQSRD-FYYQRKQSG-KTHKVACLVQSFPVHSGSGELKPMGL  100 (358)
Q Consensus        27 ~~~Lp~d~~~~il~rlp~~~-~~~~---~~v~k~w~~l~~s~~-f~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~  100 (358)
                      ++-||+..+.+++...+.-. -..+   -.-.|.|..+..... ....+.... .....|+++||......        .
T Consensus       228 ~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~--------~  299 (571)
T KOG4441|consen  228 LPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQ--------S  299 (571)
T ss_pred             ccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCc--------c
Confidence            46677777777777665111 0111   111223332222111 111111111 34567888998754111        4


Q ss_pred             cceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          101 SYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       101 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      ...+..|||.++.|..+++||.++.    .++++++++.||++||.+. ....++++++||+.+++|..+++|+.+|..+
T Consensus       300 ~~~ve~yd~~~~~w~~~a~m~~~r~----~~~~~~~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~  374 (571)
T KOG4441|consen  300 LRSVECYDPKTNEWSSLAPMPSPRC----RVGVAVLNGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPMNTKRSDF  374 (571)
T ss_pred             cceeEEecCCcCcEeecCCCCcccc----cccEEEECCEEEEEccccC-CCcccceEEEecCCCCceeccCCccCccccc
Confidence            5689999999999999999998653    5689999999999999984 2235899999999999999999999999999


Q ss_pred             eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336          181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQL  260 (358)
Q Consensus       181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~  260 (358)
                      ++++++|.||++||.+.. ..++++++||+.+++|..+++|+..|.++++++++|+||++||......  .+.++++|||
T Consensus       375 ~v~~l~g~iYavGG~dg~-~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~--~l~sve~YDP  451 (571)
T KOG4441|consen  375 GVAVLDGKLYAVGGFDGE-KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN--CLNSVECYDP  451 (571)
T ss_pred             eeEEECCEEEEEeccccc-cccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc--ccceEEEEcC
Confidence            999999999999999954 5688999999999999999999999999999999999999999876542  5789999999


Q ss_pred             CCCceEEcCCccccCCCCCceeee-----------------------eecCccCceeccccc--eeeceEEEEeCCeEEE
Q 018336          261 GTGEWKRAENAWKLSQCPRSNVGV-----------------------GREGKLFCWAETEAA--VQFGTCRVELGGCTLV  315 (358)
Q Consensus       261 ~~~~W~~~~~~p~~~~~~~~~~~~-----------------------~~d~~~~~W~~lp~~--~r~~~~~~~~~~~i~v  315 (358)
                      .+++|+.+++|+.    +|..+++                       .||+++++|..++++  .|...+++..+++||+
T Consensus       452 ~t~~W~~~~~M~~----~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~  527 (571)
T KOG4441|consen  452 ETNTWTLIAPMNT----RRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYA  527 (571)
T ss_pred             CCCceeecCCccc----ccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEE
Confidence            9999999999964    3333333                       799999999888766  4688899999999999


Q ss_pred             ECCCCCCCC-ceEEEEECCCCceEee-cCCCCccCceeeeeEE
Q 018336          316 TGSGYQGGP-QEFYVVEGRNGKFRKF-DVPAEYKGLVQSGCCV  356 (358)
Q Consensus       316 ~gG~~~~~~-~~i~~yd~~~~~W~~~-~~p~~~~~~~~~~~~~  356 (358)
                      +||+..... +.+.+|||++++|+.. + |....+.  ++|++
T Consensus       528 vGG~~~~~~l~~ve~ydp~~d~W~~~~~-~~~~~~~--~~~~~  567 (571)
T KOG4441|consen  528 VGGFDGNNNLNTVECYDPETDTWTEVTE-PESGRGG--AGVAV  567 (571)
T ss_pred             EecccCccccceeEEcCCCCCceeeCCC-ccccccC--cceEE
Confidence            999766655 8999999999999999 5 5444444  55543

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=287.78  Aligned_cols=229  Identities=11%  Similarity=0.182  Sum_probs=191.9

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAA  182 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~  182 (358)
                      .+++|||.+++|..++++|.++    ..+++++.++.||++||..... ...+++++||+.+++|..+++||.+|..+++
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r----~~~~~a~l~~~IYviGG~~~~~-~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~  347 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHI----INYASAIVDNEIIIAGGYNFNN-PSLNKVYKINIENKIHVELPPMIKNRCRFSL  347 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccc----cceEEEEECCEEEEEcCCCCCC-CccceEEEEECCCCeEeeCCCCcchhhceeE
Confidence            5789999999999999999865    3457888999999999975222 2467899999999999999999999999999


Q ss_pred             EEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCC--------------
Q 018336          183 GELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQ--------------  248 (358)
Q Consensus       183 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~--------------  248 (358)
                      ++++++||++||.+.. ...+++++||+.+++|+.+++||.+|..+++++++|+||++||......              
T Consensus       348 ~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        348 AVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             EEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence            9999999999998654 3467899999999999999999999999999999999999999864210              


Q ss_pred             -CceeeeeEEEECCCCceEEcCCccccCCCCCceeee---------------------eecCcc-Cceeccccc--eeec
Q 018336          249 -GIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV---------------------GREGKL-FCWAETEAA--VQFG  303 (358)
Q Consensus       249 -~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~---------------------~~d~~~-~~W~~lp~~--~r~~  303 (358)
                       ....+.+++|||.+++|+.+++|+.+. .....+.+                     .||+++ ++|..++++  .|..
T Consensus       427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~  505 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNIWETLPNFWTGT-IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA  505 (557)
T ss_pred             cccccceEEEECCCCCeEeecCCCCccc-ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence             112568999999999999999986532 11111111                     799999 899888776  4688


Q ss_pred             eEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336          304 TCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       304 ~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                      +++++++|+||++||.+..  ..+++||+.+++|+.+
T Consensus       506 ~~~~~~~~~iyv~Gg~~~~--~~~e~yd~~~~~W~~~  540 (557)
T PHA02713        506 LHTILHDNTIMMLHCYESY--MLQDTFNVYTYEWNHI  540 (557)
T ss_pred             ceeEEECCEEEEEeeecce--eehhhcCcccccccch
Confidence            9999999999999998643  4789999999999998

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=3.3e-34  Score=273.04  Aligned_cols=229  Identities=14%  Similarity=0.203  Sum_probs=189.8

Q ss_pred             ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcc
Q 018336           76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVS  155 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~  155 (358)
                      .+..+|++||......        ...+++.||+.+++|..+++++.++    ..+++++.++.||++||....  ...+
T Consensus       293 ~~~~lyv~GG~~~~~~--------~~~~v~~yd~~~~~W~~~~~~~~~R----~~~~~~~~~~~lyv~GG~~~~--~~~~  358 (534)
T PHA03098        293 LNNVIYFIGGMNKNNL--------SVNSVVSYDTKTKSWNKVPELIYPR----KNPGVTVFNNRIYVIGGIYNS--ISLN  358 (534)
T ss_pred             ECCEEEEECCCcCCCC--------eeccEEEEeCCCCeeeECCCCCccc----ccceEEEECCEEEEEeCCCCC--Eecc
Confidence            4567889988643221        3457999999999999999998765    356888899999999998633  2467


Q ss_pred             eeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECC
Q 018336          156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGS  235 (358)
Q Consensus       156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~  235 (358)
                      ++++||+.+++|+.++++|.+|..++++.++++||++||.......++.+++||+.+++|+.++++|.+|.+++++++++
T Consensus       359 ~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~  438 (534)
T PHA03098        359 TVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDG  438 (534)
T ss_pred             eEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECC
Confidence            89999999999999999999999999999999999999986655557899999999999999999999999999999999


Q ss_pred             EEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEE
Q 018336          236 EFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLV  315 (358)
Q Consensus       236 ~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v  315 (358)
                      +||++||..........+.+++||+.+++|+.++.+|.    +                      |..++++.++++|||
T Consensus       439 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~----~----------------------r~~~~~~~~~~~iyv  492 (534)
T PHA03098        439 KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF----P----------------------RINASLCIFNNKIYV  492 (534)
T ss_pred             EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc----c----------------------cccceEEEECCEEEE
Confidence            99999998654322224569999999999999987753    2                      333455778999999


Q ss_pred             ECCCCCCC-CceEEEEECCCCceEee-cCCC
Q 018336          316 TGSGYQGG-PQEFYVVEGRNGKFRKF-DVPA  344 (358)
Q Consensus       316 ~gG~~~~~-~~~i~~yd~~~~~W~~~-~~p~  344 (358)
                      +||..... .+.+++||+++++|+.+ .+|+
T Consensus       493 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~  523 (534)
T PHA03098        493 VGGDKYEYYINEIEVYDDKTNTWTLFCKFPK  523 (534)
T ss_pred             EcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence            99987554 27999999999999999 5444

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=1.5e-33  Score=263.03  Aligned_cols=207  Identities=17%  Similarity=0.252  Sum_probs=175.0

Q ss_pred             ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcc
Q 018336           76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVS  155 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~  155 (358)
                      .+..+|++||.....         ....++.|||.+++|..+++|+.++.    .+++++.+++||++||.+.     .+
T Consensus       270 ~~~~lyviGG~~~~~---------~~~~v~~Ydp~~~~W~~~~~m~~~r~----~~~~v~~~~~iYviGG~~~-----~~  331 (480)
T PHA02790        270 VGEVVYLIGGWMNNE---------IHNNAIAVNYISNNWIPIPPMNSPRL----YASGVPANNKLYVVGGLPN-----PT  331 (480)
T ss_pred             ECCEEEEEcCCCCCC---------cCCeEEEEECCCCEEEECCCCCchhh----cceEEEECCEEEEECCcCC-----CC
Confidence            345788888753211         24578899999999999999998653    4578889999999999752     25


Q ss_pred             eeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECC
Q 018336          156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGS  235 (358)
Q Consensus       156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~  235 (358)
                      ++++||+.+++|..+++||.+|..+++++++++||++||.+..   ...+++||+.+++|+.+++|+.+|..+++++++|
T Consensus       332 sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~  408 (480)
T PHA02790        332 SVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR  408 (480)
T ss_pred             ceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCccccceEEEECC
Confidence            6899999999999999999999999999999999999998643   3679999999999999999999999999999999


Q ss_pred             EEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEE
Q 018336          236 EFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLV  315 (358)
Q Consensus       236 ~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v  315 (358)
                      +||++||.           +++||+.+++|+.+++|+.    +                      |..+++++++|+|||
T Consensus       409 ~IYv~GG~-----------~e~ydp~~~~W~~~~~m~~----~----------------------r~~~~~~v~~~~IYv  451 (480)
T PHA02790        409 RLFLVGRN-----------AEFYCESSNTWTLIDDPIY----P----------------------RDNPELIIVDNKLLL  451 (480)
T ss_pred             EEEEECCc-----------eEEecCCCCcEeEcCCCCC----C----------------------ccccEEEEECCEEEE
Confidence            99999973           3689999999999998853    3                      344556899999999


Q ss_pred             ECCCCCCCC-ceEEEEECCCCceEee
Q 018336          316 TGSGYQGGP-QEFYVVEGRNGKFRKF  340 (358)
Q Consensus       316 ~gG~~~~~~-~~i~~yd~~~~~W~~~  340 (358)
                      +||.+.... +.+++||+++++|+..
T Consensus       452 iGG~~~~~~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        452 IGGFYRGSYIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             ECCcCCCcccceEEEEECCCCeEEec
Confidence            999864432 7899999999999874

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=5.6e-33  Score=249.63  Aligned_cols=233  Identities=18%  Similarity=0.314  Sum_probs=178.7

Q ss_pred             ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcc
Q 018336           76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVS  155 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~  155 (358)
                      .+..||++||......       ....+++.||+.+++|..+++++..+...+..+++++++++||++||.....  .++
T Consensus        31 ~~~~iyv~GG~~~~~~-------~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~--~~~  101 (341)
T PLN02153         31 VGDKLYSFGGELKPNE-------HIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR--EFS  101 (341)
T ss_pred             ECCEEEEECCccCCCC-------ceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC--ccC
Confidence            4568999998642111       0235799999999999998876532211123567889999999999986443  367


Q ss_pred             eeEEEECCCCcEEeCCCC-----CCCceeeeeEEECCEEEEEcCcCCCC-----CCCCeEEEEECCCCceEecCCCc---
Q 018336          156 HVFVYDFTTRRWTRGKNM-----PDNRSFFAAGELNGRVIIAGGHDENK-----TALSSAWAYDLIKDEWTELARMT---  222 (358)
Q Consensus       156 ~~~~yd~~t~~W~~~~~~-----~~~~~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~~p---  222 (358)
                      ++++||+.+++|+.+++|     |.+|..|+++.++++|||+||.+...     ..+.++++||+++++|+.++.+.   
T Consensus       102 ~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~  181 (341)
T PLN02153        102 DFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF  181 (341)
T ss_pred             cEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC
Confidence            999999999999999877     78899999999999999999986432     13568999999999999998653   


Q ss_pred             cCcCceeEEEECCEEEEEeCcccCC-----CCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccc
Q 018336          223 QERDECEAVVIGSEFWVVSGYKTER-----QGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETE  297 (358)
Q Consensus       223 ~~~~~~~~~~~~~~lyv~gG~~~~~-----~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp  297 (358)
                      .+|..+++++++++||++||.....     .+...+.+++||+.+++|+.+..... .+.+                   
T Consensus       182 ~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~-~P~~-------------------  241 (341)
T PLN02153        182 EKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA-KPSA-------------------  241 (341)
T ss_pred             CCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC-CCCC-------------------
Confidence            6888889999999999999975321     11225689999999999999875311 1123                   


Q ss_pred             cceeeceEEEEeCCeEEEECCCCCC--------C--CceEEEEECCCCceEee
Q 018336          298 AAVQFGTCRVELGGCTLVTGSGYQG--------G--PQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       298 ~~~r~~~~~~~~~~~i~v~gG~~~~--------~--~~~i~~yd~~~~~W~~~  340 (358)
                         |..++++.++++|||+||....        .  .+++|+||+++++|+.+
T Consensus       242 ---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~  291 (341)
T PLN02153        242 ---RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL  291 (341)
T ss_pred             ---cceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence               3445568899999999997421        1  16899999999999988

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=2.3e-32  Score=254.35  Aligned_cols=228  Identities=17%  Similarity=0.262  Sum_probs=179.7

Q ss_pred             ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcc
Q 018336           76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVS  155 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~  155 (358)
                      .+..+|++||......       ....++++||+.+++|..++.+...+...+..+++++++++||++||.....  .++
T Consensus       174 ~~~~iyv~GG~~~~~~-------~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~--~~n  244 (470)
T PLN02193        174 VGNKIYSFGGEFTPNQ-------PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR--QYN  244 (470)
T ss_pred             ECCEEEEECCcCCCCC-------CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC--CCc
Confidence            4578999998632111       0234799999999999987654322111134567888999999999986543  478


Q ss_pred             eeEEEECCCCcEEeCCCC---CCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCC---CccCcCcee
Q 018336          156 HVFVYDFTTRRWTRGKNM---PDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELAR---MTQERDECE  229 (358)
Q Consensus       156 ~~~~yd~~t~~W~~~~~~---~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~---~p~~~~~~~  229 (358)
                      ++++||+.+++|+.++++   |.+|..|+++..+++||++||.+.. ....++++||+.+++|+.++.   +|.+|..+.
T Consensus       245 dv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~  323 (470)
T PLN02193        245 GFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAG  323 (470)
T ss_pred             cEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCCCCCcE
Confidence            999999999999999887   7899999999999999999998764 356889999999999999874   667888899


Q ss_pred             EEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEe
Q 018336          230 AVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVEL  309 (358)
Q Consensus       230 ~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~  309 (358)
                      +++++++||++||....    ..+++++||+.+++|+.+..+.. .+.+                      |..++++.+
T Consensus       324 ~~~~~gkiyviGG~~g~----~~~dv~~yD~~t~~W~~~~~~g~-~P~~----------------------R~~~~~~~~  376 (470)
T PLN02193        324 LEVVQGKVWVVYGFNGC----EVDDVHYYDPVQDKWTQVETFGV-RPSE----------------------RSVFASAAV  376 (470)
T ss_pred             EEEECCcEEEEECCCCC----ccCceEEEECCCCEEEEeccCCC-CCCC----------------------cceeEEEEE
Confidence            99999999999997643    26789999999999999876521 1133                      344556889


Q ss_pred             CCeEEEECCCCCC--------C-C-ceEEEEECCCCceEee
Q 018336          310 GGCTLVTGSGYQG--------G-P-QEFYVVEGRNGKFRKF  340 (358)
Q Consensus       310 ~~~i~v~gG~~~~--------~-~-~~i~~yd~~~~~W~~~  340 (358)
                      +++|||+||....        . . +++++||+.+++|+++
T Consensus       377 ~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~  417 (470)
T PLN02193        377 GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL  417 (470)
T ss_pred             CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence            9999999998531        1 1 6899999999999998

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=5.1e-33  Score=261.80  Aligned_cols=207  Identities=24%  Similarity=0.380  Sum_probs=182.0

Q ss_pred             EECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          135 SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       135 ~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ...+.||++||..+ .....+.+.+||+.+++|..+++||.+|..++++++++.||++||++.....++.+++||+.+++
T Consensus       282 ~~~~~l~~vGG~~~-~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNR-QGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCCeEEEECCCCC-CCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc
Confidence            55788999999875 22457899999999999999999999999999999999999999999534568999999999999


Q ss_pred             eEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee----------
Q 018336          215 WTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV----------  284 (358)
Q Consensus       215 W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~----------  284 (358)
                      |+.+++|+.+|..+++++++|.||++||+++..   ...++++||+.+++|+.+++|+.    +|..+++          
T Consensus       361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~---~l~svE~YDp~~~~W~~va~m~~----~r~~~gv~~~~g~iYi~  433 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK---SLNSVECYDPVTNKWTPVAPMLT----RRSGHGVAVLGGKLYII  433 (571)
T ss_pred             eeccCCccCccccceeEEECCEEEEEecccccc---ccccEEEecCCCCcccccCCCCc----ceeeeEEEEECCEEEEE
Confidence            999999999999999999999999999998554   57899999999999999999863    4444433          


Q ss_pred             --------------eecCccCceeccccc--eeeceEEEEeCCeEEEECCCCCCCC-ceEEEEECCCCceEee-cCCCCc
Q 018336          285 --------------GREGKLFCWAETEAA--VQFGTCRVELGGCTLVTGSGYQGGP-QEFYVVEGRNGKFRKF-DVPAEY  346 (358)
Q Consensus       285 --------------~~d~~~~~W~~lp~~--~r~~~~~~~~~~~i~v~gG~~~~~~-~~i~~yd~~~~~W~~~-~~p~~~  346 (358)
                                    .||+.+++|..+|++  .|.++++++++++||++||.+.... ..+++|||.+++|+.+ +++.++
T Consensus       434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r  513 (571)
T KOG4441|consen  434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR  513 (571)
T ss_pred             cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence                          899999999999998  5788999999999999999987333 7799999999999999 677776


Q ss_pred             cCc
Q 018336          347 KGL  349 (358)
Q Consensus       347 ~~~  349 (358)
                      +..
T Consensus       514 s~~  516 (571)
T KOG4441|consen  514 SAV  516 (571)
T ss_pred             ccc
Confidence            655

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=5.4e-32  Score=241.56  Aligned_cols=243  Identities=16%  Similarity=0.198  Sum_probs=180.1

Q ss_pred             ccceEEEEeeccCCCCCCCC-CCCCCcceEEEEe-CCC-CCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCC
Q 018336           76 THKVACLVQSFPVHSGSGEL-KPMGLSYGVTVFD-PVS-LTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYS  152 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~d-~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~  152 (358)
                      .+..|+++||.+....+... ..+....+++.|+ +.. .+|..++++|.++    .+++++++++.||++||.....  
T Consensus        12 ~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r----~~~~~~~~~~~lyviGG~~~~~--   85 (323)
T TIGR03548        12 IGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEA----AYGASVSVENGIYYIGGSNSSE--   85 (323)
T ss_pred             ECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccc----cceEEEEECCEEEEEcCCCCCC--
Confidence            46789999997543211000 0011334677774 433 3799999998865    3456788899999999986433  


Q ss_pred             CcceeEEEECCCCcE----EeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCcc-CcCc
Q 018336          153 PVSHVFVYDFTTRRW----TRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ-ERDE  227 (358)
Q Consensus       153 ~~~~~~~yd~~t~~W----~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~~~~  227 (358)
                      .++++++||+.+++|    +.+++||.+|..+++++++++||++||.... ...+++++||+.+++|+.++++|. +|..
T Consensus        86 ~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r~~  164 (323)
T TIGR03548        86 RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPRVQ  164 (323)
T ss_pred             CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCCCc
Confidence            478999999999998    7789999999999999999999999997543 346899999999999999998885 7888


Q ss_pred             eeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEE
Q 018336          228 CEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRV  307 (358)
Q Consensus       228 ~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~  307 (358)
                      +.+++++++|||+||.....    ..++++||+.+++|+.++.++... .++..                   +..++++
T Consensus       165 ~~~~~~~~~iYv~GG~~~~~----~~~~~~yd~~~~~W~~~~~~~~~~-~p~~~-------------------~~~~~~~  220 (323)
T TIGR03548       165 PVCVKLQNELYVFGGGSNIA----YTDGYKYSPKKNQWQKVADPTTDS-EPISL-------------------LGAASIK  220 (323)
T ss_pred             ceEEEECCEEEEEcCCCCcc----ccceEEEecCCCeeEECCCCCCCC-Cceec-------------------cceeEEE
Confidence            88889999999999985432    356789999999999998764211 12111                   1223345


Q ss_pred             EeCCeEEEECCCCCCC---------------------------------CceEEEEECCCCceEee-cCCC-CccCc
Q 018336          308 ELGGCTLVTGSGYQGG---------------------------------PQEFYVVEGRNGKFRKF-DVPA-EYKGL  349 (358)
Q Consensus       308 ~~~~~i~v~gG~~~~~---------------------------------~~~i~~yd~~~~~W~~~-~~p~-~~~~~  349 (358)
                      ..+++|||+||.+...                                 .+.+++||+.+++|+.+ ++|. .+.++
T Consensus       221 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~  297 (323)
T TIGR03548       221 INESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGA  297 (323)
T ss_pred             ECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCch
Confidence            5689999999986321                                 15799999999999999 6663 34343

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=7.4e-31  Score=236.72  Aligned_cols=237  Identities=19%  Similarity=0.225  Sum_probs=174.5

Q ss_pred             ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeC--CCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCC---
Q 018336           76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDP--VSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPAS---  150 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~---  150 (358)
                      .+..+|++||..             ...++.||+  .+++|..+++||..+   +..+++++++++||++||.....   
T Consensus        16 ~~~~vyv~GG~~-------------~~~~~~~d~~~~~~~W~~l~~~p~~~---R~~~~~~~~~~~iYv~GG~~~~~~~~   79 (346)
T TIGR03547        16 IGDKVYVGLGSA-------------GTSWYKLDLKKPSKGWQKIADFPGGP---RNQAVAAAIDGKLYVFGGIGKANSEG   79 (346)
T ss_pred             ECCEEEEEcccc-------------CCeeEEEECCCCCCCceECCCCCCCC---cccceEEEECCEEEEEeCCCCCCCCC
Confidence            467888888752             236788885  678999999998421   34568889999999999975321   


Q ss_pred             -CCCcceeEEEECCCCcEEeCC-CCCCCceeeeeE-EECCEEEEEcCcCCCC----------------------------
Q 018336          151 -YSPVSHVFVYDFTTRRWTRGK-NMPDNRSFFAAG-ELNGRVIIAGGHDENK----------------------------  199 (358)
Q Consensus       151 -~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~~-~~~~~iyv~GG~~~~~----------------------------  199 (358)
                       ...++++++||+.+++|+.++ ++|.++..++++ .++++||++||.+...                            
T Consensus        80 ~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (346)
T TIGR03547        80 SPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQ  159 (346)
T ss_pred             cceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCC
Confidence             124678999999999999997 456666666666 6899999999986320                            


Q ss_pred             -----CCCCeEEEEECCCCceEecCCCcc-CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEE--CCCCceEEcCCc
Q 018336          200 -----TALSSAWAYDLIKDEWTELARMTQ-ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQ--LGTGEWKRAENA  271 (358)
Q Consensus       200 -----~~~~~~~~yd~~t~~W~~~~~~p~-~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd--~~~~~W~~~~~~  271 (358)
                           ...+.+++||+.+++|+.+++||. +|..+++++++++|||+||.....  .....++.||  +++++|+.++.|
T Consensus       160 ~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~y~~~~~~~~W~~~~~m  237 (346)
T TIGR03547       160 PPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPG--LRTAEVKQYLFTGGKLEWNKLPPL  237 (346)
T ss_pred             ChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCC--ccchheEEEEecCCCceeeecCCC
Confidence                 013689999999999999999986 688888899999999999985432  1123455555  567799999988


Q ss_pred             cccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC------------------CceEEEEECC
Q 018336          272 WKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG------------------PQEFYVVEGR  333 (358)
Q Consensus       272 p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~------------------~~~i~~yd~~  333 (358)
                      |.+....+..                   +..++++.++++|||+||.....                  ...+++||++
T Consensus       238 ~~~r~~~~~~-------------------~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~  298 (346)
T TIGR03547       238 PPPKSSSQEG-------------------LAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD  298 (346)
T ss_pred             CCCCCCcccc-------------------ccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec
Confidence            6431000000                   12344678999999999975211                  0368899999


Q ss_pred             CCceEee-cCCCCccCc
Q 018336          334 NGKFRKF-DVPAEYKGL  349 (358)
Q Consensus       334 ~~~W~~~-~~p~~~~~~  349 (358)
                      +++|+.+ ++|.++..+
T Consensus       299 ~~~W~~~~~lp~~~~~~  315 (346)
T TIGR03547       299 NGKWSKVGKLPQGLAYG  315 (346)
T ss_pred             CCcccccCCCCCCceee
Confidence            9999999 888776544

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=7.2e-32  Score=255.15  Aligned_cols=227  Identities=14%  Similarity=0.167  Sum_probs=178.3

Q ss_pred             hhcHhHHHhhcChhhHHHHHhcCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCcee
Q 018336           52 RVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFC  131 (358)
Q Consensus        52 ~v~k~w~~l~~s~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~  131 (358)
                      ...+.|..+...|.-.. .......+..+|++||......        ....++.|||.+++|..+++|+.++    ..+
T Consensus       279 ~~~~~W~~l~~mp~~r~-~~~~a~l~~~IYviGG~~~~~~--------~~~~v~~Yd~~~n~W~~~~~m~~~R----~~~  345 (557)
T PHA02713        279 INTMEYSVISTIPNHII-NYASAIVDNEIIIAGGYNFNNP--------SLNKVYKINIENKIHVELPPMIKNR----CRF  345 (557)
T ss_pred             CCCCeEEECCCCCcccc-ceEEEEECCEEEEEcCCCCCCC--------ccceEEEEECCCCeEeeCCCCcchh----hce
Confidence            33456766655443211 2223345678999998632111        2457999999999999999999865    356


Q ss_pred             EEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCC------------
Q 018336          132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENK------------  199 (358)
Q Consensus       132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~------------  199 (358)
                      ++++++++||++||.++..  ..+++++|||.+++|..+++||.+|..+++++++++||++||.+...            
T Consensus       346 ~~~~~~g~IYviGG~~~~~--~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~  423 (557)
T PHA02713        346 SLAVIDDTIYAIGGQNGTN--VERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSID  423 (557)
T ss_pred             eEEEECCEEEEECCcCCCC--CCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccc
Confidence            8899999999999986443  36789999999999999999999999999999999999999986421            


Q ss_pred             -----CCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCC-CceEEcCCccc
Q 018336          200 -----TALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGT-GEWKRAENAWK  273 (358)
Q Consensus       200 -----~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~-~~W~~~~~~p~  273 (358)
                           ...+.+++|||++++|+.+++|+.+|..+++++++|+||++||.....  .....+++|||.+ ++|+.+++||.
T Consensus       424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~--~~~~~ve~Ydp~~~~~W~~~~~m~~  501 (557)
T PHA02713        424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEK--NVKTCIFRYNTNTYNGWELITTTES  501 (557)
T ss_pred             ccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCC--ccceeEEEecCCCCCCeeEccccCc
Confidence                 125789999999999999999999999999999999999999986432  2245689999999 89999999874


Q ss_pred             cCCCCCceeee--------------------eecCccCceeccccc
Q 018336          274 LSQCPRSNVGV--------------------GREGKLFCWAETEAA  299 (358)
Q Consensus       274 ~~~~~~~~~~~--------------------~~d~~~~~W~~lp~~  299 (358)
                          +|..+++                    .||+.+++|..+.+.
T Consensus       502 ----~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~  543 (557)
T PHA02713        502 ----RLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQ  543 (557)
T ss_pred             ----ccccceeEEECCEEEEEeeecceeehhhcCcccccccchhhh
Confidence                3332222                    799999999887765

>PHA03098 kelch-like protein; Provisional

Probab=99.98  E-value=1.3e-30  Score=248.40  Aligned_cols=212  Identities=14%  Similarity=0.188  Sum_probs=175.6

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAA  182 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~  182 (358)
                      .+..|++..++|..+++.+.     +..+++++.++.||++||..... ...+++++||+.+++|..+++|+.+|..+++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~lyv~GG~~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~  338 (534)
T PHA03098        265 NYITNYSPLSEINTIIDIHY-----VYCFGSVVLNNVIYFIGGMNKNN-LSVNSVVSYDTKTKSWNKVPELIYPRKNPGV  338 (534)
T ss_pred             eeeecchhhhhcccccCccc-----cccceEEEECCEEEEECCCcCCC-CeeccEEEEeCCCCeeeECCCCCcccccceE
Confidence            45578888999988876654     22357888999999999986433 2457899999999999999999999999999


Q ss_pred             EEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCC
Q 018336          183 GELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGT  262 (358)
Q Consensus       183 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~  262 (358)
                      +.++++||++||.+.. ...+++++||+.+++|+.++++|.+|..+++++++|+||++||.....  ...+.+++||+.+
T Consensus       339 ~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~--~~~~~v~~yd~~t  415 (534)
T PHA03098        339 TVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKND--ELLKTVECFSLNT  415 (534)
T ss_pred             EEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCC--cccceEEEEeCCC
Confidence            9999999999998743 457889999999999999999999999999999999999999975432  2367899999999


Q ss_pred             CceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC----CceEEEEECCCCceE
Q 018336          263 GEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG----PQEFYVVEGRNGKFR  338 (358)
Q Consensus       263 ~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~----~~~i~~yd~~~~~W~  338 (358)
                      ++|+.++.+|.+                          |..++++..+++|||+||.....    .+.+++||+.+++|+
T Consensus       416 ~~W~~~~~~p~~--------------------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~  469 (534)
T PHA03098        416 NKWSKGSPLPIS--------------------------HYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT  469 (534)
T ss_pred             CeeeecCCCCcc--------------------------ccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCcee
Confidence            999999887532                          33445688999999999986432    156999999999999


Q ss_pred             ee-cCCCCccCc
Q 018336          339 KF-DVPAEYKGL  349 (358)
Q Consensus       339 ~~-~~p~~~~~~  349 (358)
                      .+ ++|.++..+
T Consensus       470 ~~~~~~~~r~~~  481 (534)
T PHA03098        470 ELSSLNFPRINA  481 (534)
T ss_pred             eCCCCCcccccc
Confidence            99 677665544

>PLN02153 epithiospecifier protein

Probab=99.97  E-value=1.7e-29  Score=226.99  Aligned_cols=213  Identities=18%  Similarity=0.242  Sum_probs=164.0

Q ss_pred             CCCCCeeecCC----CCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCC-CCc---eee
Q 018336          109 PVSLTWDRLGP----VPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMP-DNR---SFF  180 (358)
Q Consensus       109 ~~~~~W~~~~~----~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~~---~~~  180 (358)
                      +...+|..+..    +|.++    ..++++++++.|||+||.........+++++||+.+++|..+++++ .++   ..+
T Consensus         4 ~~~~~W~~~~~~~~~~P~pR----~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~   79 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGPR----CSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGV   79 (341)
T ss_pred             ccCCeEEEecCCCCCCCCCC----CcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCce
Confidence            46778999876    45543    4568888999999999985432233578999999999999988764 344   367


Q ss_pred             eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCC-----ccCcCceeEEEECCEEEEEeCcccCCC---Ccee
Q 018336          181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM-----TQERDECEAVVIGSEFWVVSGYKTERQ---GIFD  252 (358)
Q Consensus       181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-----p~~~~~~~~~~~~~~lyv~gG~~~~~~---~~~~  252 (358)
                      ++++++++||++||.... ...+++++||+.+++|+.++++     |.+|..+++++++++|||+||......   ...+
T Consensus        80 ~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  158 (341)
T PLN02153         80 RMVAVGTKLYIFGGRDEK-REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF  158 (341)
T ss_pred             EEEEECCEEEEECCCCCC-CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc
Confidence            888999999999998754 3467899999999999999876     788999999999999999999864321   1134


Q ss_pred             eeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCC--------C-
Q 018336          253 ESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQG--------G-  323 (358)
Q Consensus       253 ~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~--------~-  323 (358)
                      +++++||+++++|+.++.+... +.+                      |..++++.++++|||+||....        . 
T Consensus       159 ~~v~~yd~~~~~W~~l~~~~~~-~~~----------------------r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~  215 (341)
T PLN02153        159 RTIEAYNIADGKWVQLPDPGEN-FEK----------------------RGGAGFAVVQGKIWVVYGFATSILPGGKSDYE  215 (341)
T ss_pred             ceEEEEECCCCeEeeCCCCCCC-CCC----------------------CCcceEEEECCeEEEEeccccccccCCcccee
Confidence            6899999999999998865321 122                      4455568899999999986421        1 


Q ss_pred             CceEEEEECCCCceEee-c---CCCCccCc
Q 018336          324 PQEFYVVEGRNGKFRKF-D---VPAEYKGL  349 (358)
Q Consensus       324 ~~~i~~yd~~~~~W~~~-~---~p~~~~~~  349 (358)
                      .+++++||+.+++|+++ .   +|.++..+
T Consensus       216 ~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~  245 (341)
T PLN02153        216 SNAVQFFDPASGKWTEVETTGAKPSARSVF  245 (341)
T ss_pred             cCceEEEEcCCCcEEeccccCCCCCCccee
Confidence            26899999999999998 2   46666555

>PLN02193 nitrile-specifier protein

Probab=99.97  E-value=2.8e-29  Score=233.74  Aligned_cols=217  Identities=16%  Similarity=0.238  Sum_probs=168.2

Q ss_pred             ceEEEEeCCC----CCeeecCCC---CCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCC-
Q 018336          102 YGVTVFDPVS----LTWDRLGPV---PEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNM-  173 (358)
Q Consensus       102 ~~~~~~d~~~----~~W~~~~~~---~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~-  173 (358)
                      ..++.+++.+    ++|..+.++   |.+    +..|+++++++.||++||.........+++|+||+.+++|..++++ 
T Consensus       137 ig~y~~~~~~~~~~~~W~~~~~~~~~P~p----R~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g  212 (470)
T PLN02193        137 LGAYISLPSTPKLLGKWIKVEQKGEGPGL----RCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG  212 (470)
T ss_pred             eEEEEecCCChhhhceEEEcccCCCCCCC----ccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCC
Confidence            3455567655    899998764   443    4567888999999999997533222346899999999999987643 


Q ss_pred             --CC-CceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCC---ccCcCceeEEEECCEEEEEeCcccCC
Q 018336          174 --PD-NRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM---TQERDECEAVVIGSEFWVVSGYKTER  247 (358)
Q Consensus       174 --~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~~~~~~~~~~~~~lyv~gG~~~~~  247 (358)
                        |. .|..++++.++++||++||.+.. ...+++++||+.+++|+.++++   |.+|..|++++++++|||+||.....
T Consensus       213 ~~P~~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~  291 (470)
T PLN02193        213 DVPHLSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA  291 (470)
T ss_pred             CCCCCcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC
Confidence              33 24678888999999999998754 3578999999999999999877   78999999999999999999986432


Q ss_pred             CCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceE
Q 018336          248 QGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEF  327 (358)
Q Consensus       248 ~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i  327 (358)
                         ....+++||+.+++|+.++.... .+.+                      |..++++.++++|||+||......+++
T Consensus       292 ---~~~~~~~yd~~t~~W~~~~~~~~-~~~~----------------------R~~~~~~~~~gkiyviGG~~g~~~~dv  345 (470)
T PLN02193        292 ---RLKTLDSYNIVDKKWFHCSTPGD-SFSI----------------------RGGAGLEVVQGKVWVVYGFNGCEVDDV  345 (470)
T ss_pred             ---CcceEEEEECCCCEEEeCCCCCC-CCCC----------------------CCCcEEEEECCcEEEEECCCCCccCce
Confidence               36789999999999998875311 1122                      444556889999999999754333899


Q ss_pred             EEEECCCCceEee-cC---CCCccCc
Q 018336          328 YVVEGRNGKFRKF-DV---PAEYKGL  349 (358)
Q Consensus       328 ~~yd~~~~~W~~~-~~---p~~~~~~  349 (358)
                      ++||+++++|+.+ .+   |.++..+
T Consensus       346 ~~yD~~t~~W~~~~~~g~~P~~R~~~  371 (470)
T PLN02193        346 HYYDPVQDKWTQVETFGVRPSERSVF  371 (470)
T ss_pred             EEEECCCCEEEEeccCCCCCCCccee
Confidence            9999999999998 43   5555544

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.97  E-value=1.4e-29  Score=230.15  Aligned_cols=238  Identities=18%  Similarity=0.248  Sum_probs=172.7

Q ss_pred             ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCC--CCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCC---
Q 018336           76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPV--SLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPAS---  150 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~---  150 (358)
                      .+..+|++++..             ...++.||..  +++|..++++|..+   +..++++++++.||++||.....   
T Consensus        37 ~~~~iyv~gG~~-------------~~~~~~~d~~~~~~~W~~l~~~p~~~---r~~~~~v~~~~~IYV~GG~~~~~~~~  100 (376)
T PRK14131         37 DNNTVYVGLGSA-------------GTSWYKLDLNAPSKGWTKIAAFPGGP---REQAVAAFIDGKLYVFGGIGKTNSEG  100 (376)
T ss_pred             ECCEEEEEeCCC-------------CCeEEEEECCCCCCCeEECCcCCCCC---cccceEEEECCEEEEEcCCCCCCCCC
Confidence            467888887752             1257788876  57899999887422   44567889999999999975411   


Q ss_pred             -CCCcceeEEEECCCCcEEeCCC-CCCCceeeeeEE-ECCEEEEEcCcCCCC----------------------------
Q 018336          151 -YSPVSHVFVYDFTTRRWTRGKN-MPDNRSFFAAGE-LNGRVIIAGGHDENK----------------------------  199 (358)
Q Consensus       151 -~~~~~~~~~yd~~t~~W~~~~~-~~~~~~~~~~~~-~~~~iyv~GG~~~~~----------------------------  199 (358)
                       ...++++++||+.+++|+.+++ +|.++..+++++ .+++||++||.....                            
T Consensus       101 ~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~  180 (376)
T PRK14131        101 SPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDK  180 (376)
T ss_pred             ceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcC
Confidence             1236789999999999999985 466666677666 799999999975310                            


Q ss_pred             -----CCCCeEEEEECCCCceEecCCCcc-CcCceeEEEECCEEEEEeCcccCCCCceeeee--EEEECCCCceEEcCCc
Q 018336          200 -----TALSSAWAYDLIKDEWTELARMTQ-ERDECEAVVIGSEFWVVSGYKTERQGIFDESA--ESYQLGTGEWKRAENA  271 (358)
Q Consensus       200 -----~~~~~~~~yd~~t~~W~~~~~~p~-~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i--~~yd~~~~~W~~~~~~  271 (358)
                           ...+.+++||+.+++|+.++++|. ++..++++.++++|||+||......  ....+  ..||+++++|+.+..+
T Consensus       181 ~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~--~~~~~~~~~~~~~~~~W~~~~~~  258 (376)
T PRK14131        181 KPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGL--RTDAVKQGKFTGNNLKWQKLPDL  258 (376)
T ss_pred             ChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCc--CChhheEEEecCCCcceeecCCC
Confidence                 014689999999999999999996 6778888899999999999754321  12233  3567789999999988


Q ss_pred             cccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC---------------C---ceEEEEECC
Q 018336          272 WKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG---------------P---QEFYVVEGR  333 (358)
Q Consensus       272 p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~---------------~---~~i~~yd~~  333 (358)
                      |.+    |.....              ..+..+.++.++++|||+||.....               .   ..+++||++
T Consensus       259 p~~----~~~~~~--------------~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~  320 (376)
T PRK14131        259 PPA----PGGSSQ--------------EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALV  320 (376)
T ss_pred             CCC----CcCCcC--------------CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEec
Confidence            642    110000              0011223567899999999976321               0   246789999


Q ss_pred             CCceEee-cCCCCccCc
Q 018336          334 NGKFRKF-DVPAEYKGL  349 (358)
Q Consensus       334 ~~~W~~~-~~p~~~~~~  349 (358)
                      +++|+.+ .+|.++..+
T Consensus       321 ~~~W~~~~~lp~~r~~~  337 (376)
T PRK14131        321 NGKWQKVGELPQGLAYG  337 (376)
T ss_pred             CCcccccCcCCCCccce
Confidence            9999999 888887655

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.97  E-value=4.9e-29  Score=224.88  Aligned_cols=246  Identities=17%  Similarity=0.209  Sum_probs=171.1

Q ss_pred             hcHhHHHhhcChhhHHHHHhcCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCC-CCCCCCCCCcee
Q 018336           53 VSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGP-VPEYPAGLPLFC  131 (358)
Q Consensus        53 v~k~w~~l~~s~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~~~~~~~~~~~~  131 (358)
                      ..++|..+...|...+........+..||++||.......   ........++.|||.+++|..++. +|..    +..+
T Consensus        39 ~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~---~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~----~~~~  111 (346)
T TIGR03547        39 PSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSE---GSPQVFDDVYRYDPKKNSWQKLDTRSPVG----LLGA  111 (346)
T ss_pred             CCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCC---CcceecccEEEEECCCCEEecCCCCCCCc----ccce
Confidence            3467887766553222222333456789999986432100   000124579999999999999973 3332    2233


Q ss_pred             EEE-EECCEEEEEcCcCCCCC--------------------------------CCcceeEEEECCCCcEEeCCCCCC-Cc
Q 018336          132 QVA-SSQGKLVVMGGWDPASY--------------------------------SPVSHVFVYDFTTRRWTRGKNMPD-NR  177 (358)
Q Consensus       132 ~~~-~~~~~lyv~Gg~~~~~~--------------------------------~~~~~~~~yd~~t~~W~~~~~~~~-~~  177 (358)
                      +++ +.+++||++||......                                ...+++++|||.+++|+.+++||. +|
T Consensus       112 ~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r  191 (346)
T TIGR03547       112 SGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGT  191 (346)
T ss_pred             eEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcC
Confidence            444 68999999999753200                                013689999999999999999996 68


Q ss_pred             eeeeeEEECCEEEEEcCcCCCCCCCCeEEEEE--CCCCceEecCCCccCcC-------ceeEEEECCEEEEEeCcccCCC
Q 018336          178 SFFAAGELNGRVIIAGGHDENKTALSSAWAYD--LIKDEWTELARMTQERD-------ECEAVVIGSEFWVVSGYKTERQ  248 (358)
Q Consensus       178 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd--~~t~~W~~~~~~p~~~~-------~~~~~~~~~~lyv~gG~~~~~~  248 (358)
                      ..++++.++++||++||..........+++|+  +.+++|+.+++||.+|.       .+.+++++|+||++||......
T Consensus       192 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~  271 (346)
T TIGR03547       192 AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGA  271 (346)
T ss_pred             CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCc
Confidence            88888999999999999865432334566665  46789999999987652       3446789999999999753210


Q ss_pred             -------------C-ceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEE
Q 018336          249 -------------G-IFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTL  314 (358)
Q Consensus       249 -------------~-~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~  314 (358)
                                   + .....+++||+++++|+.+..+|.+                          |..++++.++++||
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~--------------------------~~~~~~~~~~~~iy  325 (346)
T TIGR03547       272 QENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG--------------------------LAYGVSVSWNNGVL  325 (346)
T ss_pred             hhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC--------------------------ceeeEEEEcCCEEE
Confidence                         0 0124689999999999999988632                          33445678999999


Q ss_pred             EECCCCCCCC--ceEEEEE
Q 018336          315 VTGSGYQGGP--QEFYVVE  331 (358)
Q Consensus       315 v~gG~~~~~~--~~i~~yd  331 (358)
                      |+||.+..+.  ++++.|-
T Consensus       326 v~GG~~~~~~~~~~v~~~~  344 (346)
T TIGR03547       326 LIGGENSGGKAVTDVYLLS  344 (346)
T ss_pred             EEeccCCCCCEeeeEEEEE
Confidence            9999876543  6776653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.97  E-value=3.2e-29  Score=202.63  Aligned_cols=224  Identities=15%  Similarity=0.268  Sum_probs=181.1

Q ss_pred             CceeEEEEECCEEEEEcCcCCCC-CC--CcceeEEEECCCCcEEeCCC-------------CCCCceeeeeEEECCEEEE
Q 018336          128 PLFCQVASSQGKLVVMGGWDPAS-YS--PVSHVFVYDFTTRRWTRGKN-------------MPDNRSFFAAGELNGRVII  191 (358)
Q Consensus       128 ~~~~~~~~~~~~lyv~Gg~~~~~-~~--~~~~~~~yd~~t~~W~~~~~-------------~~~~~~~~~~~~~~~~iyv  191 (358)
                      +.-|++++++..||-+||+.... .+  -.-++.++|..+-+|.++++             .|..|+.|+.+.+++++|+
T Consensus        14 RVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yv   93 (392)
T KOG4693|consen   14 RVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYV   93 (392)
T ss_pred             cccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEE
Confidence            55678999999999999975322 11  22379999999999999875             3566899999999999999


Q ss_pred             EcCcCCCCCCCCeEEEEECCCCceEecC---CCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEc
Q 018336          192 AGGHDENKTALSSAWAYDLIKDEWTELA---RMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRA  268 (358)
Q Consensus       192 ~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~  268 (358)
                      .||.++....-+.+++||++++.|.+..   -.|.+|.+|+++++++.+|+|||+....+ .+.+++.++|..+.+|..+
T Consensus        94 WGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~-~FS~d~h~ld~~TmtWr~~  172 (392)
T KOG4693|consen   94 WGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQ-RFSQDTHVLDFATMTWREM  172 (392)
T ss_pred             EcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHH-hhhccceeEeccceeeeeh
Confidence            9999987677789999999999999764   67999999999999999999999875432 4678999999999999998


Q ss_pred             CCccccCCCCCceeee--------------------------------eecCccCceeccccc-----eeeceEEEEeCC
Q 018336          269 ENAWKLSQCPRSNVGV--------------------------------GREGKLFCWAETEAA-----VQFGTCRVELGG  311 (358)
Q Consensus       269 ~~~p~~~~~~~~~~~~--------------------------------~~d~~~~~W~~lp~~-----~r~~~~~~~~~~  311 (358)
                      ...-.+ +..|.++..                                .+|.++..|...|+.     -|..+++.+.++
T Consensus       173 ~Tkg~P-prwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng  251 (392)
T KOG4693|consen  173 HTKGDP-PRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNG  251 (392)
T ss_pred             hccCCC-chhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcc
Confidence            764322 134444433                                689999999666544     367899999999


Q ss_pred             eEEEECCCCCCCC---ceEEEEECCCCceEee----cCCCCccCceeeeeE
Q 018336          312 CTLVTGSGYQGGP---QEFYVVEGRNGKFRKF----DVPAEYKGLVQSGCC  355 (358)
Q Consensus       312 ~i~v~gG~~~~~~---~~i~~yd~~~~~W~~~----~~p~~~~~~~~~~~~  355 (358)
                      +||+|||++..-.   +++|+|||.+..|+.|    ..|.+++.+  ++|.
T Consensus       252 ~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRq--C~~v  300 (392)
T KOG4693|consen  252 KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQ--CSVV  300 (392)
T ss_pred             eEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccce--eEEE
Confidence            9999999975533   9999999999999999    567776666  5554

>PHA02790 Kelch-like protein; Provisional

Probab=99.97  E-value=1.3e-28  Score=229.77  Aligned_cols=173  Identities=13%  Similarity=0.261  Sum_probs=148.5

Q ss_pred             EEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCC
Q 018336          133 VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIK  212 (358)
Q Consensus       133 ~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t  212 (358)
                      ++..++.||++||.++.  ...+.+++|||.+++|..+++|+.+|..+++++++++||++||.+..    ..++.||+.+
T Consensus       267 ~~~~~~~lyviGG~~~~--~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~  340 (480)
T PHA02790        267 STHVGEVVYLIGGWMNN--EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGD  340 (480)
T ss_pred             eEEECCEEEEEcCCCCC--CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCC
Confidence            45589999999997543  34678999999999999999999999999999999999999997532    5699999999


Q ss_pred             CceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCc
Q 018336          213 DEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFC  292 (358)
Q Consensus       213 ~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~  292 (358)
                      ++|..+++||.+|..+++++++|+||++||....     ...+++|||.+++|+.+++++.+                  
T Consensus       341 n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~~~m~~~------------------  397 (480)
T PHA02790        341 AAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-----DTTTEYLLPNHDQWQFGPSTYYP------------------  397 (480)
T ss_pred             CeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-----CccEEEEeCCCCEEEeCCCCCCc------------------
Confidence            9999999999999999999999999999997532     35789999999999999888632                  


Q ss_pred             eeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee-cCCCCccCc
Q 018336          293 WAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF-DVPAEYKGL  349 (358)
Q Consensus       293 W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~-~~p~~~~~~  349 (358)
                              |..+++++++|+|||+||.       +.+||+++++|+.+ ++|.++..+
T Consensus       398 --------r~~~~~~~~~~~IYv~GG~-------~e~ydp~~~~W~~~~~m~~~r~~~  440 (480)
T PHA02790        398 --------HYKSCALVFGRRLFLVGRN-------AEFYCESSNTWTLIDDPIYPRDNP  440 (480)
T ss_pred             --------cccceEEEECCEEEEECCc-------eEEecCCCCcEeEcCCCCCCcccc
Confidence                    3344568899999999983       57899999999999 777766555

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.97  E-value=5.7e-29  Score=226.09  Aligned_cols=253  Identities=16%  Similarity=0.167  Sum_probs=177.7

Q ss_pred             cHhHHHhhcChhhHHHHHhcCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCC-CCCCCCCCceeE
Q 018336           54 SRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPV-PEYPAGLPLFCQ  132 (358)
Q Consensus        54 ~k~w~~l~~s~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-~~~~~~~~~~~~  132 (358)
                      .++|..+...|...+........+..+|++||......   ........++++||+.+++|..++.+ |.+    +..++
T Consensus        61 ~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~---~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~----~~~~~  133 (376)
T PRK14131         61 SKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNS---EGSPQVFDDVYKYDPKTNSWQKLDTRSPVG----LAGHV  133 (376)
T ss_pred             CCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCC---CCceeEcccEEEEeCCCCEEEeCCCCCCCc----ccceE
Confidence            35787666554322222233345678999998643100   00001246799999999999999853 332    23345


Q ss_pred             EEE-ECCEEEEEcCcCCCC--------------------------------CCCcceeEEEECCCCcEEeCCCCCC-Cce
Q 018336          133 VAS-SQGKLVVMGGWDPAS--------------------------------YSPVSHVFVYDFTTRRWTRGKNMPD-NRS  178 (358)
Q Consensus       133 ~~~-~~~~lyv~Gg~~~~~--------------------------------~~~~~~~~~yd~~t~~W~~~~~~~~-~~~  178 (358)
                      +++ .+++||++||.....                                ....+++++||+.+++|..++++|. +|.
T Consensus       134 ~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~  213 (376)
T PRK14131        134 AVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTA  213 (376)
T ss_pred             EEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCC
Confidence            555 799999999975310                                0124689999999999999999996 678


Q ss_pred             eeeeEEECCEEEEEcCcCCCCCCCCeEE--EEECCCCceEecCCCccCcCc--------eeEEEECCEEEEEeCcccCCC
Q 018336          179 FFAAGELNGRVIIAGGHDENKTALSSAW--AYDLIKDEWTELARMTQERDE--------CEAVVIGSEFWVVSGYKTERQ  248 (358)
Q Consensus       179 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~--~yd~~t~~W~~~~~~p~~~~~--------~~~~~~~~~lyv~gG~~~~~~  248 (358)
                      .++++.++++||++||..........++  .||+++++|+.+++||.+|..        +.+++++++||++||......
T Consensus       214 ~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~  293 (376)
T PRK14131        214 GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGA  293 (376)
T ss_pred             cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCC
Confidence            8888889999999999754433334444  457789999999999877642        225678999999999763210


Q ss_pred             ------Cc--------eeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEE
Q 018336          249 ------GI--------FDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTL  314 (358)
Q Consensus       249 ------~~--------~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~  314 (358)
                            +.        ....+++||+++++|+.+..+|.+                          |..++++.++++||
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~--------------------------r~~~~av~~~~~iy  347 (376)
T PRK14131        294 RENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG--------------------------LAYGVSVSWNNGVL  347 (376)
T ss_pred             hhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC--------------------------ccceEEEEeCCEEE
Confidence                  00        113578999999999999888643                          33445788999999


Q ss_pred             EECCCCCCCC--ceEEEEECCCCceEe
Q 018336          315 VTGSGYQGGP--QEFYVVEGRNGKFRK  339 (358)
Q Consensus       315 v~gG~~~~~~--~~i~~yd~~~~~W~~  339 (358)
                      |+||......  +++++|+++.+++..
T Consensus       348 v~GG~~~~~~~~~~v~~~~~~~~~~~~  374 (376)
T PRK14131        348 LIGGETAGGKAVSDVTLLSWDGKKLTV  374 (376)
T ss_pred             EEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence            9999865433  899999999888765

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.96  E-value=5.3e-28  Score=215.89  Aligned_cols=225  Identities=16%  Similarity=0.208  Sum_probs=163.0

Q ss_pred             hHHHhhcChhhHHHHHhcCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCe----eecCCCCCCCCCCCcee
Q 018336           56 RWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTW----DRLGPVPEYPAGLPLFC  131 (358)
Q Consensus        56 ~w~~l~~s~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~~~~~~~~~~~~  131 (358)
                      +|..+...|..... ......+..||++||.....         ...+++.||+.+++|    ..++++|.++    ..+
T Consensus        52 ~W~~~~~lp~~r~~-~~~~~~~~~lyviGG~~~~~---------~~~~v~~~d~~~~~w~~~~~~~~~lp~~~----~~~  117 (323)
T TIGR03548        52 KWVKDGQLPYEAAY-GASVSVENGIYYIGGSNSSE---------RFSSVYRITLDESKEELICETIGNLPFTF----ENG  117 (323)
T ss_pred             eEEEcccCCccccc-eEEEEECCEEEEEcCCCCCC---------CceeEEEEEEcCCceeeeeeEcCCCCcCc----cCc
Confidence            46655544432211 11223467889998863221         346899999999998    6788888764    345


Q ss_pred             EEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCC-CceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEEC
Q 018336          132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPD-NRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDL  210 (358)
Q Consensus       132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~  210 (358)
                      ++++.+++||++||....  ...+++++||+.+++|+.++++|. +|..++++.++++||++||.+..  ...++++||+
T Consensus       118 ~~~~~~~~iYv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~  193 (323)
T TIGR03548       118 SACYKDGTLYVGGGNRNG--KPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSP  193 (323)
T ss_pred             eEEEECCEEEEEeCcCCC--ccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEec
Confidence            788899999999997433  236899999999999999999884 78888888999999999998643  2356899999


Q ss_pred             CCCceEecCCCc-----cCcCceeE-EEECCEEEEEeCcccCCC-----------------------------Cceeeee
Q 018336          211 IKDEWTELARMT-----QERDECEA-VVIGSEFWVVSGYKTERQ-----------------------------GIFDESA  255 (358)
Q Consensus       211 ~t~~W~~~~~~p-----~~~~~~~~-~~~~~~lyv~gG~~~~~~-----------------------------~~~~~~i  255 (358)
                      ++++|+.+++++     ..+..+.+ ++.+++||++||.+....                             ..+.+.+
T Consensus       194 ~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  273 (323)
T TIGR03548       194 KKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKI  273 (323)
T ss_pred             CCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceE
Confidence            999999998753     23333333 455799999999864210                             0123568


Q ss_pred             EEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC
Q 018336          256 ESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG  323 (358)
Q Consensus       256 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~  323 (358)
                      ++||+.+++|+.++.+|..   +                      |..++++.++++||++||....+
T Consensus       274 ~~yd~~~~~W~~~~~~p~~---~----------------------r~~~~~~~~~~~iyv~GG~~~pg  316 (323)
T TIGR03548       274 LIYNVRTGKWKSIGNSPFF---A----------------------RCGAALLLTGNNIFSINGELKPG  316 (323)
T ss_pred             EEEECCCCeeeEccccccc---c----------------------cCchheEEECCEEEEEeccccCC
Confidence            8899998889888866421   2                      44556789999999999986554

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.94  E-value=1.9e-25  Score=180.88  Aligned_cols=208  Identities=19%  Similarity=0.299  Sum_probs=164.4

Q ss_pred             cceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecC---CCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCC
Q 018336           77 HKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLG---PVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSP  153 (358)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~  153 (358)
                      +..+|+.|+.+...+        ..+.+++|||.+++|++..   .+|..    +..|++++.++.+|++||+.....+-
T Consensus        88 ~d~~yvWGGRND~eg--------aCN~Ly~fDp~t~~W~~p~v~G~vPga----RDGHsAcV~gn~MyiFGGye~~a~~F  155 (392)
T KOG4693|consen   88 QDKAYVWGGRNDDEG--------ACNLLYEFDPETNVWKKPEVEGFVPGA----RDGHSACVWGNQMYIFGGYEEDAQRF  155 (392)
T ss_pred             cceEEEEcCccCccc--------ccceeeeeccccccccccceeeecCCc----cCCceeeEECcEEEEecChHHHHHhh
Confidence            346778888765443        5678999999999997653   24444    45678999999999999997666566


Q ss_pred             cceeEEEECCCCcEEeCC---CCCCCceeeeeEEECCEEEEEcCcCCCC--------CCCCeEEEEECCCCceEecCC--
Q 018336          154 VSHVFVYDFTTRRWTRGK---NMPDNRSFFAAGELNGRVIIAGGHDENK--------TALSSAWAYDLIKDEWTELAR--  220 (358)
Q Consensus       154 ~~~~~~yd~~t~~W~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~~~~--------~~~~~~~~yd~~t~~W~~~~~--  220 (358)
                      .+++.++|..|.+|+.+.   ..|.-|..|++.++++.+|++||..+..        .+-+.+..+|..|+.|...++  
T Consensus       156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~  235 (392)
T KOG4693|consen  156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT  235 (392)
T ss_pred             hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence            789999999999999875   3455578899999999999999986532        234678899999999998874  


Q ss_pred             -CccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccc
Q 018336          221 -MTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAA  299 (358)
Q Consensus       221 -~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~  299 (358)
                       .|..|..|++.+.|+++|+|||+.+.- +...+++++|||.+..|..+..--. .+++                     
T Consensus       236 ~~P~GRRSHS~fvYng~~Y~FGGYng~l-n~HfndLy~FdP~t~~W~~I~~~Gk-~P~a---------------------  292 (392)
T KOG4693|consen  236 MKPGGRRSHSTFVYNGKMYMFGGYNGTL-NVHFNDLYCFDPKTSMWSVISVRGK-YPSA---------------------  292 (392)
T ss_pred             cCCCcccccceEEEcceEEEecccchhh-hhhhcceeecccccchheeeeccCC-CCCc---------------------
Confidence             477899999999999999999997643 3457899999999999999886421 1122                     


Q ss_pred             eeeceEEEEeCCeEEEECCCC
Q 018336          300 VQFGTCRVELGGCTLVTGSGY  320 (358)
Q Consensus       300 ~r~~~~~~~~~~~i~v~gG~~  320 (358)
                       |....+++.++++|+|||..
T Consensus       293 -RRRqC~~v~g~kv~LFGGTs  312 (392)
T KOG4693|consen  293 -RRRQCSVVSGGKVYLFGGTS  312 (392)
T ss_pred             -ccceeEEEECCEEEEecCCC
Confidence             34445678999999999975

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.93  E-value=6.8e-24  Score=197.15  Aligned_cols=231  Identities=20%  Similarity=0.311  Sum_probs=186.4

Q ss_pred             ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcc
Q 018336           76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVS  155 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~  155 (358)
                      ...-++++||.......       ...+++++|..+..|.........+ ..+.++.+++++++||++||.... ....+
T Consensus        69 ~~~~~~vfGG~~~~~~~-------~~~dl~~~d~~~~~w~~~~~~g~~p-~~r~g~~~~~~~~~l~lfGG~~~~-~~~~~  139 (482)
T KOG0379|consen   69 IGNKLYVFGGYGSGDRL-------TDLDLYVLDLESQLWTKPAATGDEP-SPRYGHSLSAVGDKLYLFGGTDKK-YRNLN  139 (482)
T ss_pred             ECCEEEEECCCCCCCcc-------ccceeEEeecCCcccccccccCCCC-CcccceeEEEECCeEEEEccccCC-CCChh
Confidence            36678888886443321       1126999999999998775533322 125677889999999999998752 23578


Q ss_pred             eeEEEECCCCcEEeCC---CCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecC---CCccCcCcee
Q 018336          156 HVFVYDFTTRRWTRGK---NMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA---RMTQERDECE  229 (358)
Q Consensus       156 ~~~~yd~~t~~W~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~~~~~~  229 (358)
                      +++.||+.|++|..+.   .+|.+|.+|+++++++++||+||.+......+++++||+++.+|.++.   ..|.+|.+|+
T Consensus       140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~  219 (482)
T KOG0379|consen  140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHA  219 (482)
T ss_pred             heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCce
Confidence            9999999999999864   468899999999999999999999887667899999999999999985   6788999999


Q ss_pred             EEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEe
Q 018336          230 AVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVEL  309 (358)
Q Consensus       230 ~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~  309 (358)
                      +++++++++++||..  ..+.++++++.+|+.+.+|..+..... .+.+                      |.+|..+..
T Consensus       220 ~~~~~~~~~v~gG~~--~~~~~l~D~~~ldl~~~~W~~~~~~g~-~p~~----------------------R~~h~~~~~  274 (482)
T KOG0379|consen  220 MVVVGNKLLVFGGGD--DGDVYLNDVHILDLSTWEWKLLPTGGD-LPSP----------------------RSGHSLTVS  274 (482)
T ss_pred             EEEECCeEEEEeccc--cCCceecceEeeecccceeeeccccCC-CCCC----------------------cceeeeEEE
Confidence            999999999999987  334579999999999999996665432 1233                      455556799


Q ss_pred             CCeEEEECCCCCC---CCceEEEEECCCCceEee
Q 018336          310 GGCTLVTGSGYQG---GPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       310 ~~~i~v~gG~~~~---~~~~i~~yd~~~~~W~~~  340 (358)
                      +.+++|+||....   ...++|.||.+++.|..+
T Consensus       275 ~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~  308 (482)
T KOG0379|consen  275 GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKV  308 (482)
T ss_pred             CCEEEEEcCCcccccccccccccccccccceeee
Confidence            9999999998874   238899999999999999

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.92  E-value=3.7e-24  Score=183.14  Aligned_cols=273  Identities=16%  Similarity=0.238  Sum_probs=190.3

Q ss_pred             CCCcHHHHHHHhccCCcchhhhHH------hhcHhHHHhhcChhhHHHHHhcCCccceEEEEeeccCCCCCCCCCCCCCc
Q 018336           28 PGLPEEISLECLTRLHYSTHRVAT------RVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLS  101 (358)
Q Consensus        28 ~~Lp~d~~~~il~rlp~~~~~~~~------~v~k~w~~l~~s~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  101 (358)
                      ..|-++.|.+|+..|..+.....-      ..|+.=.+|...|           ...-|+++||...+..-+.     .-
T Consensus        34 ~e~de~~i~~~iq~~eaK~~e~~~e~~~~~PspRsn~sl~~nP-----------ekeELilfGGEf~ngqkT~-----vY   97 (521)
T KOG1230|consen   34 EELDEADIAEIIQSLEAKQIEHVVETSVPPPSPRSNPSLFANP-----------EKEELILFGGEFYNGQKTH-----VY   97 (521)
T ss_pred             cccchHHHHHHHHhhhhhccceeeeccCCCCCCCCCcceeecc-----------CcceeEEecceeecceeEE-----Ee
Confidence            345577888898888877631111      1111111122221           2336777777543322100     23


Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCC----CCCCcceeEEEECCCCcEEeCC--CCC
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPA----SYSPVSHVFVYDFTTRRWTRGK--NMP  174 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~----~~~~~~~~~~yd~~t~~W~~~~--~~~  174 (358)
                      ++++.||...+.|+.+.....|+.  +..|+++++ .+.+|++||.-..    ..-...++|+||..|++|.++.  .-|
T Consensus        98 ndLy~Yn~k~~eWkk~~spn~P~p--Rsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P  175 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVSPNAPPP--RSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP  175 (521)
T ss_pred             eeeeEEeccccceeEeccCCCcCC--CccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence            689999999999998854332221  445566555 5899999995221    1234679999999999999974  578


Q ss_pred             CCceeeeeEEECCEEEEEcCcCCCC---CCCCeEEEEECCCCceEecCC---CccCcCceeEEEE-CCEEEEEeCcccC-
Q 018336          175 DNRSFFAAGELNGRVIIAGGHDENK---TALSSAWAYDLIKDEWTELAR---MTQERDECEAVVI-GSEFWVVSGYKTE-  246 (358)
Q Consensus       175 ~~~~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~t~~W~~~~~---~p~~~~~~~~~~~-~~~lyv~gG~~~~-  246 (358)
                      .+|++|-+++...+|++|||+.+..   .+.+++++||+.|-+|.++.+   -|.+|++|...+. +|.|||.||+... 
T Consensus       176 S~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~  255 (521)
T KOG1230|consen  176 SPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQR  255 (521)
T ss_pred             CCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhh
Confidence            9999999999999999999975542   358999999999999999864   4789999998877 9999999998743 


Q ss_pred             -----CCCceeeeeEEEECCC-----CceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEE
Q 018336          247 -----RQGIFDESAESYQLGT-----GEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVT  316 (358)
Q Consensus       247 -----~~~~~~~~i~~yd~~~-----~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~  316 (358)
                           ..|...++++.+++..     -.|..+.+.-. .+.+|+.+.+                     ++.-+++-|.|
T Consensus       256 ~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~-kPspRsgfsv---------------------~va~n~kal~F  313 (521)
T KOG1230|consen  256 VKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGV-KPSPRSGFSV---------------------AVAKNHKALFF  313 (521)
T ss_pred             hhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCC-CCCCCCceeE---------------------EEecCCceEEe
Confidence                 2345577899999987     35777765421 1244444333                     34456799999


Q ss_pred             CCCCC-CCC---------ceEEEEECCCCceEee
Q 018336          317 GSGYQ-GGP---------QEFYVVEGRNGKFRKF  340 (358)
Q Consensus       317 gG~~~-~~~---------~~i~~yd~~~~~W~~~  340 (358)
                      ||.-+ ...         +++|.||...++|.+.
T Consensus       314 GGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  314 GGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             cceecccccchhhhhhhhhhhhheecccchhhHh
Confidence            99865 111         8999999999999887

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=188.74  Aligned_cols=200  Identities=21%  Similarity=0.363  Sum_probs=165.7

Q ss_pred             CceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCC---CCCCCceeeeeEEECCEEEEEcCcCCCCCCCCe
Q 018336          128 PLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGK---NMPDNRSFFAAGELNGRVIIAGGHDENKTALSS  204 (358)
Q Consensus       128 ~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~---~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~  204 (358)
                      +..|+++.+++++||+||..........++|++|..+..|....   ..|.+|..|.++.++++||++||.+......++
T Consensus        61 R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~  140 (482)
T KOG0379|consen   61 RAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNE  140 (482)
T ss_pred             hhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhh
Confidence            45678888899999999976544312226999999999998753   567899999999999999999999875556889


Q ss_pred             EEEEECCCCceEecC---CCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCce
Q 018336          205 AWAYDLIKDEWTELA---RMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSN  281 (358)
Q Consensus       205 ~~~yd~~t~~W~~~~---~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~  281 (358)
                      ++.||+.|++|..+.   ..|.+|.+|+++++++++||+||.....+  ..+++++||+++.+|.++...... +.+   
T Consensus       141 l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~--~~ndl~i~d~~~~~W~~~~~~g~~-P~p---  214 (482)
T KOG0379|consen  141 LHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD--SLNDLHIYDLETSTWSELDTQGEA-PSP---  214 (482)
T ss_pred             eEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc--ceeeeeeeccccccceecccCCCC-CCC---
Confidence            999999999999875   56889999999999999999999876653  589999999999999999875321 123   


Q ss_pred             eeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCC--ceEEEEECCCCceEee----cCCCCccCceee
Q 018336          282 VGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGP--QEFYVVEGRNGKFRKF----DVPAEYKGLVQS  352 (358)
Q Consensus       282 ~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~--~~i~~yd~~~~~W~~~----~~p~~~~~~~~~  352 (358)
                                         |.+|+++.++++++|+||......  +++|.+|+.+.+|.++    .+|.++.+|...
T Consensus       215 -------------------R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~  272 (482)
T KOG0379|consen  215 -------------------RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLT  272 (482)
T ss_pred             -------------------CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeE
Confidence                               667778999999999999873333  9999999999999977    678888887544

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.90  E-value=4.2e-22  Score=170.63  Aligned_cols=190  Identities=18%  Similarity=0.339  Sum_probs=150.1

Q ss_pred             CCEEEEEcCc--CCCCCCCcceeEEEECCCCcEEeC--CCCCCCceeeeeEEE-CCEEEEEcCcCCCCC-----CCCeEE
Q 018336          137 QGKLVVMGGW--DPASYSPVSHVFVYDFTTRRWTRG--KNMPDNRSFFAAGEL-NGRVIIAGGHDENKT-----ALSSAW  206 (358)
Q Consensus       137 ~~~lyv~Gg~--~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~-----~~~~~~  206 (358)
                      .+.|+++||.  ++......+++++||..+++|+.+  |..|.||+.|.++++ .+.+|++||--...+     ...++|
T Consensus        78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W  157 (521)
T KOG1230|consen   78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLW  157 (521)
T ss_pred             cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhhee
Confidence            4689999995  222223568999999999999986  678899999988876 589999999533211     246899


Q ss_pred             EEECCCCceEecC--CCccCcCceeEEEECCEEEEEeCcccCC-CCceeeeeEEEECCCCceEEcCCccccCCCCCceee
Q 018336          207 AYDLIKDEWTELA--RMTQERDECEAVVIGSEFWVVSGYKTER-QGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVG  283 (358)
Q Consensus       207 ~yd~~t~~W~~~~--~~p~~~~~~~~~~~~~~lyv~gG~~~~~-~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~  283 (358)
                      .||..+++|+++.  .-|.+|++|.+++...+|++|||+.... +..|.+++++||+++-+|+.+.. +...+.+|+.+.
T Consensus       158 ~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga~PtpRSGcq  236 (521)
T KOG1230|consen  158 LFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGAGPTPRSGCQ  236 (521)
T ss_pred             eeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCCCCCCCCcce
Confidence            9999999999986  5688999999999999999999997653 34688999999999999999997 443456665544


Q ss_pred             eeecCccCceeccccceeeceEEEEe-CCeEEEECCCCCCCC----------ceEEEEECCC-----CceEee----cCC
Q 018336          284 VGREGKLFCWAETEAAVQFGTCRVEL-GGCTLVTGSGYQGGP----------QEFYVVEGRN-----GKFRKF----DVP  343 (358)
Q Consensus       284 ~~~d~~~~~W~~lp~~~r~~~~~~~~-~~~i~v~gG~~~~~~----------~~i~~yd~~~-----~~W~~~----~~p  343 (358)
                                            +.+. +|.|||.||+.....          +++|++++..     -.|.++    .-|
T Consensus       237 ----------------------~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kP  294 (521)
T KOG1230|consen  237 ----------------------FSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKP  294 (521)
T ss_pred             ----------------------EEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCC
Confidence                                  4545 999999999974211          8999999998     568888    356


Q ss_pred             CCccCc
Q 018336          344 AEYKGL  349 (358)
Q Consensus       344 ~~~~~~  349 (358)
                      .++.++
T Consensus       295 spRsgf  300 (521)
T KOG1230|consen  295 SPRSGF  300 (521)
T ss_pred             CCCCce
Confidence            667666

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.86  E-value=8.8e-21  Score=166.61  Aligned_cols=237  Identities=14%  Similarity=0.209  Sum_probs=175.4

Q ss_pred             CCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe---CCCCCCCceeeeeEEE
Q 018336          109 PVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR---GKNMPDNRSFFAAGEL  185 (358)
Q Consensus       109 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~---~~~~~~~~~~~~~~~~  185 (358)
                      +..-.|+++.....|-...++.|.++++...|.+|||-+..-   .+++.+||..+|+|..   ..++|.+-..|+.+..
T Consensus        14 ~~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGi---iDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvcd   90 (830)
T KOG4152|consen   14 KNVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGI---IDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCD   90 (830)
T ss_pred             hcccceEEEecccCCCCCccccchheeeeeeEEEecCCcccc---hhhhhhhccccceeecchhcCCCCCchhhcceEec
Confidence            344578887544333222366788999999999999865433   6899999999999975   3578888888899889


Q ss_pred             CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecC-------CCccCcCceeEEEECCEEEEEeCcccCCCC------cee
Q 018336          186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA-------RMTQERDECEAVVIGSEFWVVSGYKTERQG------IFD  252 (358)
Q Consensus       186 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-------~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~------~~~  252 (358)
                      +.+||+|||..+.+.+.++++.+...-=.|+++.       .+|.+|.+|+...++++-|+|||...+.++      .|+
T Consensus        91 GtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYL  170 (830)
T KOG4152|consen   91 GTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYL  170 (830)
T ss_pred             CceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhh
Confidence            9999999999888887777754444444566663       468899999999999999999998765432      578


Q ss_pred             eeeEEEECCCC----ceEEcCCccccCCCCCceeee----------------------------eecCccCce-----ec
Q 018336          253 ESAESYQLGTG----EWKRAENAWKLSQCPRSNVGV----------------------------GREGKLFCW-----AE  295 (358)
Q Consensus       253 ~~i~~yd~~~~----~W~~~~~~p~~~~~~~~~~~~----------------------------~~d~~~~~W-----~~  295 (358)
                      ++++..++..+    .|......- ..+.+|-.+..                            .+|.++.+|     .-
T Consensus       171 nDlY~leL~~Gsgvv~W~ip~t~G-v~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G  249 (830)
T KOG4152|consen  171 NDLYILELRPGSGVVAWDIPITYG-VLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSG  249 (830)
T ss_pred             cceEEEEeccCCceEEEecccccC-CCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccC
Confidence            89999888754    487654311 11233433322                            567888899     33


Q ss_pred             cccceeeceEEEEeCCeEEEECCCCC----CC-------C----ceEEEEECCCCceEee--------cCCCCccCc
Q 018336          296 TEAAVQFGTCRVELGGCTLVTGSGYQ----GG-------P----QEFYVVEGRNGKFRKF--------DVPAEYKGL  349 (358)
Q Consensus       296 lp~~~r~~~~~~~~~~~i~v~gG~~~----~~-------~----~~i~~yd~~~~~W~~~--------~~p~~~~~~  349 (358)
                      +++.+|.-|++..++|++|||||+--    +.       .    +.+-++++++.+|+.+        .+|.++.+|
T Consensus       250 ~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGH  326 (830)
T KOG4152|consen  250 VAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGH  326 (830)
T ss_pred             CCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccc
Confidence            56778999999999999999999741    10       0    5677889999999988        367777777

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.80  E-value=8.7e-19  Score=154.19  Aligned_cols=238  Identities=14%  Similarity=0.211  Sum_probs=174.3

Q ss_pred             ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecC---CCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCC
Q 018336           76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLG---PVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYS  152 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~  152 (358)
                      -.+++.+|||.+.+.          ...+.+||..+++|..-.   ++|.+    ...++.++.+.+||+|||+.... +
T Consensus        41 ikELiviFGGGNEGi----------iDELHvYNTatnqWf~PavrGDiPpg----cAA~GfvcdGtrilvFGGMvEYG-k  105 (830)
T KOG4152|consen   41 IKELIVIFGGGNEGI----------IDELHVYNTATNQWFAPAVRGDIPPG----CAAFGFVCDGTRILVFGGMVEYG-K  105 (830)
T ss_pred             eeeeEEEecCCcccc----------hhhhhhhccccceeecchhcCCCCCc----hhhcceEecCceEEEEccEeeec-c
Confidence            456777888876653          357899999999997542   23321    23456778899999999986443 3


Q ss_pred             CcceeEEEECCCCcEEeCC-------CCCCCceeeeeEEECCEEEEEcCcCCC--------CCCCCeEEEEECCCC----
Q 018336          153 PVSHVFVYDFTTRRWTRGK-------NMPDNRSFFAAGELNGRVIIAGGHDEN--------KTALSSAWAYDLIKD----  213 (358)
Q Consensus       153 ~~~~~~~yd~~t~~W~~~~-------~~~~~~~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~yd~~t~----  213 (358)
                      ..+++|........|+++.       ++|-||-.|+...++++-|+|||...+        ..+++++++.++..+    
T Consensus       106 YsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv  185 (830)
T KOG4152|consen  106 YSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVV  185 (830)
T ss_pred             ccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceE
Confidence            4678877777777788863       367889999999999999999996432        235889999988744    


Q ss_pred             ceEec---CCCccCcCceeEEEE------CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee
Q 018336          214 EWTEL---ARMTQERDECEAVVI------GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV  284 (358)
Q Consensus       214 ~W~~~---~~~p~~~~~~~~~~~------~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~  284 (358)
                      .|...   ...|.+|..|.++.+      -.++||+||..+..    +.++|.+|+++.+|.+.... ...+.+|+.+..
T Consensus       186 ~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R----LgDLW~Ldl~Tl~W~kp~~~-G~~PlPRSLHsa  260 (830)
T KOG4152|consen  186 AWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR----LGDLWTLDLDTLTWNKPSLS-GVAPLPRSLHSA  260 (830)
T ss_pred             EEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc----ccceeEEecceeeccccccc-CCCCCCcccccc
Confidence            48764   367889999998866      23699999998776    78999999999999987532 112355555433


Q ss_pred             -------------------------------------eecCccCceecc---------ccceeeceEEEEeCCeEEEECC
Q 018336          285 -------------------------------------GREGKLFCWAET---------EAAVQFGTCRVELGGCTLVTGS  318 (358)
Q Consensus       285 -------------------------------------~~d~~~~~W~~l---------p~~~r~~~~~~~~~~~i~v~gG  318 (358)
                                                           .+|..++.|..|         -+..|.+|.++.++.++|+-.|
T Consensus       261 ~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSG  340 (830)
T KOG4152|consen  261 TTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSG  340 (830)
T ss_pred             eeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEec
Confidence                                                 678889999332         2234688999999999999999


Q ss_pred             CCCCCC--------ceEEEEECC
Q 018336          319 GYQGGP--------QEFYVVEGR  333 (358)
Q Consensus       319 ~~~~~~--------~~i~~yd~~  333 (358)
                      .+.-..        .++|.+|.+
T Consensus       341 RDGYrKAwnnQVCCkDlWyLdTe  363 (830)
T KOG4152|consen  341 RDGYRKAWNNQVCCKDLWYLDTE  363 (830)
T ss_pred             cchhhHhhccccchhhhhhhccc
Confidence            863221        566766643

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.73  E-value=2.2e-16  Score=133.92  Aligned_cols=227  Identities=17%  Similarity=0.236  Sum_probs=160.0

Q ss_pred             eEEEEeC--CCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCC---CCCcceeEEEECCCCcEEeCCC-CCCC
Q 018336          103 GVTVFDP--VSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPAS---YSPVSHVFVYDFTTRRWTRGKN-MPDN  176 (358)
Q Consensus       103 ~~~~~d~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~---~~~~~~~~~yd~~t~~W~~~~~-~~~~  176 (358)
                      .++..|.  ....|+++...|...   +.....+.++++||++||.....   -+..+++++|||.+|+|+++.. .|..
T Consensus        59 afy~ldL~~~~k~W~~~a~FpG~~---rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~g  135 (381)
T COG3055          59 AFYVLDLKKPGKGWTKIADFPGGA---RNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTG  135 (381)
T ss_pred             cceehhhhcCCCCceEcccCCCcc---cccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccc
Confidence            4445444  446899999988654   44557788999999999975332   2356899999999999999854 4556


Q ss_pred             ceeeeeEEECC-EEEEEcCcCCC---------------------------------CCCCCeEEEEECCCCceEecCCCc
Q 018336          177 RSFFAAGELNG-RVIIAGGHDEN---------------------------------KTALSSAWAYDLIKDEWTELARMT  222 (358)
Q Consensus       177 ~~~~~~~~~~~-~iyv~GG~~~~---------------------------------~~~~~~~~~yd~~t~~W~~~~~~p  222 (358)
                      ...+..+.+++ .||++||++..                                 ......+..|+++++.|+.+...|
T Consensus       136 l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~p  215 (381)
T COG3055         136 LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENP  215 (381)
T ss_pred             cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCc
Confidence            67777777877 99999997642                                 112457899999999999998777


Q ss_pred             c-CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECC--CCceEEcCCccccCCCCCceeee---------------
Q 018336          223 Q-ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLG--TGEWKRAENAWKLSQCPRSNVGV---------------  284 (358)
Q Consensus       223 ~-~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~--~~~W~~~~~~p~~~~~~~~~~~~---------------  284 (358)
                      . ++++.+.+.-++++.++-|+.....  ....+..++..  .-+|..+..+|.+.......+.-               
T Consensus       216 f~~~aGsa~~~~~n~~~lInGEiKpGL--Rt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GG  293 (381)
T COG3055         216 FYGNAGSAVVIKGNKLTLINGEIKPGL--RTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGG  293 (381)
T ss_pred             ccCccCcceeecCCeEEEEcceecCCc--cccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecC
Confidence            6 5566555566777999988875542  23445556665  55899998877543222211111               


Q ss_pred             ----------------------------eecCccCce---eccccceeeceEEEEeCCeEEEECCCCCCCC--ceEEEEE
Q 018336          285 ----------------------------GREGKLFCW---AETEAAVQFGTCRVELGGCTLVTGSGYQGGP--QEFYVVE  331 (358)
Q Consensus       285 ----------------------------~~d~~~~~W---~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~--~~i~~yd  331 (358)
                                                  +|=...+.|   .+||. ...+...+..++.||+|||+++++.  ..++.+-
T Consensus       294 AnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~-~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~  372 (381)
T COG3055         294 ANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQ-GLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLS  372 (381)
T ss_pred             CCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccCC-CccceEEEecCCcEEEEccccCCCeeeeeEEEEE
Confidence                                        333348899   77887 4567777889999999999998876  5555554


Q ss_pred             CCCC
Q 018336          332 GRNG  335 (358)
Q Consensus       332 ~~~~  335 (358)
                      ...+
T Consensus       373 ~~gk  376 (381)
T COG3055         373 WDGK  376 (381)
T ss_pred             EcCc
Confidence            4433

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.60  E-value=8.1e-15  Score=124.51  Aligned_cols=222  Identities=16%  Similarity=0.190  Sum_probs=149.6

Q ss_pred             ecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCC--CcEEeCCCCCC-CceeeeeEEECCEEEEE
Q 018336          116 RLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTT--RRWTRGKNMPD-NRSFFAAGELNGRVIIA  192 (358)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~-~~~~~~~~~~~~~iyv~  192 (358)
                      .+|.+|.+-..   . +.+.+++.+||--|..+      ...++.|...  ..|+++...|. +|....+++++++||++
T Consensus        29 ~lPdlPvg~Kn---G-~Ga~ig~~~YVGLGs~G------~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvF   98 (381)
T COG3055          29 QLPDLPVGFKN---G-AGALIGDTVYVGLGSAG------TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVF   98 (381)
T ss_pred             cCCCCCccccc---c-ccceecceEEEEeccCC------ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEe
Confidence            45666664321   1 44566789998877443      3567777654  58999998874 57888888999999999


Q ss_pred             cCcCCCCC----CCCeEEEEECCCCceEecC-CCccCcCceeEEEECC-EEEEEeCcccCCCCceeeeeEEEECCCCceE
Q 018336          193 GGHDENKT----ALSSAWAYDLIKDEWTELA-RMTQERDECEAVVIGS-EFWVVSGYKTERQGIFDESAESYQLGTGEWK  266 (358)
Q Consensus       193 GG~~~~~~----~~~~~~~yd~~t~~W~~~~-~~p~~~~~~~~~~~~~-~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~  266 (358)
                      ||......    ..++++.||+.+++|+++. ..|....++..+.+++ ++|++||.+....+.++.++-.-+-+...|.
T Consensus        99 gG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~  178 (381)
T COG3055          99 GGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVD  178 (381)
T ss_pred             eccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHH
Confidence            99865432    3689999999999999987 5577777888888888 8999999886654444444444444444444


Q ss_pred             EcCCccccCCCCCce---eeeeecCccCce---eccccceeeceEEEEeCCeEEEECCCCCCCC--ceEEEEECC--CCc
Q 018336          267 RAENAWKLSQCPRSN---VGVGREGKLFCW---AETEAAVQFGTCRVELGGCTLVTGSGYQGGP--QEFYVVEGR--NGK  336 (358)
Q Consensus       267 ~~~~~p~~~~~~~~~---~~~~~d~~~~~W---~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~--~~i~~yd~~--~~~  336 (358)
                      .+...-...+..-.+   -...||+.++.|   ...|...+.+.+++.-+|++.+|-|+-..+.  ..++++|..  ..+
T Consensus       179 ~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~  258 (381)
T COG3055         179 KIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLK  258 (381)
T ss_pred             HHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCcee
Confidence            443211000000111   112577777777   3445556677777777888999999876664  667777665  455


Q ss_pred             eEee-cCCCCcc
Q 018336          337 FRKF-DVPAEYK  347 (358)
Q Consensus       337 W~~~-~~p~~~~  347 (358)
                      |..+ .+|.+..
T Consensus       259 w~~l~~lp~~~~  270 (381)
T COG3055         259 WLKLSDLPAPIG  270 (381)
T ss_pred             eeeccCCCCCCC
Confidence            9999 7776544

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.40  E-value=1.8e-13  Score=120.85  Aligned_cols=210  Identities=15%  Similarity=0.203  Sum_probs=145.1

Q ss_pred             CCCCCeeecCCCCC------CCCCCCceeEEEEECC--EEEEEcCcCCCCCCCcceeEEEECCCCcEEeC---CCCCCCc
Q 018336          109 PVSLTWDRLGPVPE------YPAGLPLFCQVASSQG--KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRG---KNMPDNR  177 (358)
Q Consensus       109 ~~~~~W~~~~~~~~------~~~~~~~~~~~~~~~~--~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~---~~~~~~~  177 (358)
                      +..-+|.++++-..      ...+.+.+|.++...+  .||++||+++..  .+.++|.|+...+.|..+   ...|..|
T Consensus       236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~--~l~DFW~Y~v~e~~W~~iN~~t~~PG~R  313 (723)
T KOG2437|consen  236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ--DLADFWAYSVKENQWTCINRDTEGPGAR  313 (723)
T ss_pred             cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch--hHHHHHhhcCCcceeEEeecCCCCCcch
Confidence            45567877765331      1223356778887754  899999998765  388999999999999886   3578899


Q ss_pred             eeeeeEEEC--CEEEEEcCcCCC-----CCCCCeEEEEECCCCceEecC------CCccCcCceeEEEECCE--EEEEeC
Q 018336          178 SFFAAGELN--GRVIIAGGHDEN-----KTALSSAWAYDLIKDEWTELA------RMTQERDECEAVVIGSE--FWVVSG  242 (358)
Q Consensus       178 ~~~~~~~~~--~~iyv~GG~~~~-----~~~~~~~~~yd~~t~~W~~~~------~~p~~~~~~~~~~~~~~--lyv~gG  242 (358)
                      .+|-++...  .++|+.|-+-..     ....++++.||..++.|.-+.      .=|...+.|.+++..++  +||+||
T Consensus       314 sCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGG  393 (723)
T KOG2437|consen  314 SCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGG  393 (723)
T ss_pred             hhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecC
Confidence            999988754  489999976432     123578999999999999875      23566778889999888  999999


Q ss_pred             cccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCC
Q 018336          243 YKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQG  322 (358)
Q Consensus       243 ~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~  322 (358)
                      .....+......++.||.....|..+..-.... .+.  +..           ........+-.+.-++.+|++||....
T Consensus       394 r~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~-~~v--vE~-----------~~sR~ghcmE~~~~n~~ly~fggq~s~  459 (723)
T KOG2437|consen  394 RILTCNEPQFSGLYAFNCQCQTWKLLREDSCNA-GPV--VED-----------IQSRIGHCMEFHSKNRCLYVFGGQRSK  459 (723)
T ss_pred             eeccCCCccccceEEEecCCccHHHHHHHHhhc-Ccc--hhH-----------HHHHHHHHHHhcCCCCeEEeccCcccc
Confidence            876544344678999999999999887532110 110  000           000011233446678899999997655


Q ss_pred             CC-ceEEEEECCC
Q 018336          323 GP-QEFYVVEGRN  334 (358)
Q Consensus       323 ~~-~~i~~yd~~~  334 (358)
                      .. +-.+.||+..
T Consensus       460 ~El~L~f~y~I~~  472 (723)
T KOG2437|consen  460 TELNLFFSYDIDS  472 (723)
T ss_pred             eEEeehhcceecc
Confidence            43 4445565443

>PF13964 Kelch_6: Kelch motif

Probab=99.29  E-value=1.1e-11  Score=77.89  Aligned_cols=50  Identities=24%  Similarity=0.374  Sum_probs=45.7

Q ss_pred             CceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCc
Q 018336          176 NRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQER  225 (358)
Q Consensus       176 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~  225 (358)
                      ||..+++++++++||++||........+++++||+++++|+.+++||.+|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence            58889999999999999999885567899999999999999999999876

>PF13964 Kelch_6: Kelch motif

Probab=99.24  E-value=3.3e-11  Score=75.64  Aligned_cols=49  Identities=29%  Similarity=0.383  Sum_probs=42.9

Q ss_pred             CceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCc
Q 018336          128 PLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNR  177 (358)
Q Consensus       128 ~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~  177 (358)
                      +..+++++++++||++||.... ....+++++||+.|++|+.+++||.+|
T Consensus         2 R~~~s~v~~~~~iyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    2 RYGHSAVVVGGKIYVFGGYDNS-GKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CccCEEEEECCEEEEECCCCCC-CCccccEEEEcCCCCcEEECCCCCCCC
Confidence            4567889999999999998764 346889999999999999999999887

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.09  E-value=1.4e-10  Score=71.85  Aligned_cols=47  Identities=32%  Similarity=0.448  Sum_probs=42.8

Q ss_pred             CceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCc
Q 018336          176 NRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMT  222 (358)
Q Consensus       176 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p  222 (358)
                      +|..+++++++++||++||.+......+.+++||+.+++|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            58899999999999999999986677899999999999999999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.02  E-value=5.7e-10  Score=99.05  Aligned_cols=158  Identities=15%  Similarity=0.193  Sum_probs=118.6

Q ss_pred             CCCCcEEeCCC----------CCCCceeeeeEEEC--CEEEEEcCcCCCCCCCCeEEEEECCCCceEecC---CCccCcC
Q 018336          162 FTTRRWTRGKN----------MPDNRSFFAAGELN--GRVIIAGGHDENKTALSSAWAYDLIKDEWTELA---RMTQERD  226 (358)
Q Consensus       162 ~~t~~W~~~~~----------~~~~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~~~  226 (358)
                      +.+-+|.++++          -|..|.+|.++...  +.+|+.||+++. ..+.+++.|+...+.|..+.   ..|..|.
T Consensus       236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~-~~l~DFW~Y~v~e~~W~~iN~~t~~PG~Rs  314 (723)
T KOG2437|consen  236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGT-QDLADFWAYSVKENQWTCINRDTEGPGARS  314 (723)
T ss_pred             cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccc-hhHHHHHhhcCCcceeEEeecCCCCCcchh
Confidence            45667887653          24568889998865  489999999986 45789999999999999875   5788999


Q ss_pred             ceeEEEECC--EEEEEeCcccCCCC---ceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceecccccee
Q 018336          227 ECEAVVIGS--EFWVVSGYKTERQG---IFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQ  301 (358)
Q Consensus       227 ~~~~~~~~~--~lyv~gG~~~~~~~---~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r  301 (358)
                      .|.+|....  ++|++|-+-+....   ....++|+||..++.|..+..-...    -+..+                .-
T Consensus       315 CHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~----dGGP~----------------~v  374 (723)
T KOG2437|consen  315 CHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAA----DGGPK----------------LV  374 (723)
T ss_pred             hhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccc----cCCcc----------------ee
Confidence            888886555  89999965433211   2356899999999999988743211    11111                13


Q ss_pred             eceEEEEeCCe--EEEECCCCCCCC----ceEEEEECCCCceEee
Q 018336          302 FGTCRVELGGC--TLVTGSGYQGGP----QEFYVVEGRNGKFRKF  340 (358)
Q Consensus       302 ~~~~~~~~~~~--i~v~gG~~~~~~----~~i~~yd~~~~~W~~~  340 (358)
                      +.|++++.+.+  |||+||..-.-.    .++|.||.....|+.+
T Consensus       375 fDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l  419 (723)
T KOG2437|consen  375 FDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL  419 (723)
T ss_pred             ecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHH
Confidence            66778999988  999999864432    7899999999999886

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=99.00  E-value=1.4e-09  Score=67.74  Aligned_cols=49  Identities=35%  Similarity=0.596  Sum_probs=43.0

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL  185 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~  185 (358)
                      +++|||+||........++++|+||+.+++|++++++|.+|..|+++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i   49 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI   49 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence            5789999999844446789999999999999999999999999998763

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.96  E-value=1.8e-09  Score=66.79  Aligned_cols=47  Identities=28%  Similarity=0.474  Sum_probs=40.9

Q ss_pred             CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCcc
Q 018336          224 ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAW  272 (358)
Q Consensus       224 ~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p  272 (358)
                      +|..+++++++++||++||....  ....+++++||+.+++|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~--~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGN--NQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBEST--SSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeeccc--CceeeeEEEEeCCCCEEEEcCCCC
Confidence            47889999999999999999872  346899999999999999999875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.96  E-value=1.4e-07  Score=80.10  Aligned_cols=173  Identities=14%  Similarity=0.124  Sum_probs=105.8

Q ss_pred             EECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCce---e--eeeEEE----CCEEEEEcCcCCCCCCCCeE
Q 018336          135 SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRS---F--FAAGEL----NGRVIIAGGHDENKTALSSA  205 (358)
Q Consensus       135 ~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~---~--~~~~~~----~~~iyv~GG~~~~~~~~~~~  205 (358)
                      .++|.|++..+         ..+.++||.|++|+.+|+.+.++.   .  .+.+..    +.++..+...... .....+
T Consensus         3 sCnGLlc~~~~---------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-~~~~~~   72 (230)
T TIGR01640         3 PCDGLICFSYG---------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-RNQSEH   72 (230)
T ss_pred             ccceEEEEecC---------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-CCCccE
Confidence            45777765532         379999999999999986554311   1  111111    2345555432111 134579


Q ss_pred             EEEECCCCceEecCCCccC-cCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEE-cCCccccCCCCCceee
Q 018336          206 WAYDLIKDEWTELARMTQE-RDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKR-AENAWKLSQCPRSNVG  283 (358)
Q Consensus       206 ~~yd~~t~~W~~~~~~p~~-~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~-~~~~p~~~~~~~~~~~  283 (358)
                      ++|+..+++|+.+...+.. ......+.+||.+|.+.......   ....|..||+.+++|.. ++ +|......     
T Consensus        73 ~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~-~P~~~~~~-----  143 (230)
T TIGR01640        73 QVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIP-LPCGNSDS-----  143 (230)
T ss_pred             EEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeee-cCcccccc-----
Confidence            9999999999998743321 11223778999999997443211   11379999999999995 43 33211000     


Q ss_pred             eeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEE-CCCCceEee-cCC
Q 018336          284 VGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVE-GRNGKFRKF-DVP  343 (358)
Q Consensus       284 ~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd-~~~~~W~~~-~~p  343 (358)
                                       .....++.++|+|.++........-+||+.+ -+.++|+++ .++
T Consensus       144 -----------------~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~  188 (230)
T TIGR01640       144 -----------------VDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVP  188 (230)
T ss_pred             -----------------ccceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEc
Confidence                             1123457788999988764322225788885 446679988 554

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.92  E-value=4.6e-09  Score=65.43  Aligned_cols=47  Identities=30%  Similarity=0.591  Sum_probs=41.1

Q ss_pred             CceeeeeEEECCEEEEEcCc--CCCCCCCCeEEEEECCCCceEecCCCc
Q 018336          176 NRSFFAAGELNGRVIIAGGH--DENKTALSSAWAYDLIKDEWTELARMT  222 (358)
Q Consensus       176 ~~~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~t~~W~~~~~~p  222 (358)
                      +|..|++++++++||++||+  .......+++++||+++++|+.++++|
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            57889999999999999999  444456889999999999999998775

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.88  E-value=6.1e-09  Score=64.85  Aligned_cols=47  Identities=28%  Similarity=0.625  Sum_probs=42.2

Q ss_pred             CCEEEEEcCcC-CCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE
Q 018336          186 NGRVIIAGGHD-ENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV  232 (358)
Q Consensus       186 ~~~iyv~GG~~-~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~  232 (358)
                      ++++||+||.+ ......+++++||+.+++|++++++|.+|.+|++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV   48 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence            57899999998 445678999999999999999999999999999875

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.88  E-value=2.5e-09  Score=66.74  Aligned_cols=47  Identities=26%  Similarity=0.575  Sum_probs=31.9

Q ss_pred             CceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCc
Q 018336          176 NRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMT  222 (358)
Q Consensus       176 ~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p  222 (358)
                      ||.+|+++.+ ++.||++||.+..+...+++++||+++++|++++++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            5888999988 5899999999887678899999999999999998877

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.86  E-value=1.7e-06  Score=73.46  Aligned_cols=204  Identities=10%  Similarity=0.037  Sum_probs=117.3

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCc-eeEEEE---EC-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCC-
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPL-FCQVAS---SQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN-  176 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~-~~~~~~---~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-  176 (358)
                      .+.++||.|++|..+|+.+.+...... ..+...   .+ -+|..+......  .....+.+|+..+++|+.+...+.. 
T Consensus        15 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~--~~~~~~~Vys~~~~~Wr~~~~~~~~~   92 (230)
T TIGR01640        15 RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN--RNQSEHQVYTLGSNSWRTIECSPPHH   92 (230)
T ss_pred             cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC--CCCccEEEEEeCCCCccccccCCCCc
Confidence            688999999999999875542111011 011111   11 144444332111  1235789999999999998743322 


Q ss_pred             ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEe-cCCCccCc----CceeEEEECCEEEEEeCcccCCCCce
Q 018336          177 RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTE-LARMTQER----DECEAVVIGSEFWVVSGYKTERQGIF  251 (358)
Q Consensus       177 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~~----~~~~~~~~~~~lyv~gG~~~~~~~~~  251 (358)
                      ......+.++|.+|.+...... .....+..||..+++|+. ++ +|...    ....++.++|+|.++.......    
T Consensus        93 ~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~----  166 (230)
T TIGR01640        93 PLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDTN----  166 (230)
T ss_pred             cccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCCC----
Confidence            1122367789999998743321 111279999999999995 54 34332    2345678899998887543211    


Q ss_pred             eeeeEEEE-CCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEE
Q 018336          252 DESAESYQ-LGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVV  330 (358)
Q Consensus       252 ~~~i~~yd-~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~y  330 (358)
                      .-.|++.+ .....|+++-.++... ....                ..  ......+..+++|++.......  ..+..|
T Consensus       167 ~~~IWvl~d~~~~~W~k~~~i~~~~-~~~~----------------~~--~~~~~~~~~~g~I~~~~~~~~~--~~~~~y  225 (230)
T TIGR01640       167 NFDLWVLNDAGKQEWSKLFTVPIPP-LPDL----------------VD--DNFLSGFTDKGEIVLCCEDENP--FYIFYY  225 (230)
T ss_pred             cEEEEEECCCCCCceeEEEEEcCcc-hhhh----------------hh--heeEeEEeeCCEEEEEeCCCCc--eEEEEE
Confidence            23566664 3355798766553210 0000                00  0113356678999988764111  348899


Q ss_pred             ECCCC
Q 018336          331 EGRNG  335 (358)
Q Consensus       331 d~~~~  335 (358)
                      |++++
T Consensus       226 ~~~~~  230 (230)
T TIGR01640       226 NVGEN  230 (230)
T ss_pred             eccCC
Confidence            99875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.84  E-value=1.1e-08  Score=63.76  Aligned_cols=49  Identities=22%  Similarity=0.378  Sum_probs=40.9

Q ss_pred             CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCcc
Q 018336          224 ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAW  272 (358)
Q Consensus       224 ~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p  272 (358)
                      +|..|++++++++|||+||..........+++++||+++++|+.++.+|
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            4788999999999999999933333456889999999999999998763

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.76  E-value=9.3e-09  Score=63.39  Aligned_cols=42  Identities=29%  Similarity=0.529  Sum_probs=36.8

Q ss_pred             CCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHH
Q 018336           27 VPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYY   68 (358)
Q Consensus        27 ~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~   68 (358)
                      |..||+|++.+||..|+..++.++..|||+|+.++.++.+++
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~   42 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR   42 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence            678999999999999999999999999999999998886554

>smart00612 Kelch Kelch domain

Probab=98.73  E-value=2.3e-08  Score=61.71  Aligned_cols=47  Identities=30%  Similarity=0.520  Sum_probs=41.1

Q ss_pred             EEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECC
Q 018336          188 RVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGS  235 (358)
Q Consensus       188 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~  235 (358)
                      +||++||.... ...+++++||+.+++|+.+++||.+|..+++++++|
T Consensus         1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            48999998753 457899999999999999999999999999888775

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.72  E-value=1.8e-08  Score=62.86  Aligned_cols=43  Identities=14%  Similarity=0.473  Sum_probs=29.0

Q ss_pred             eeceEEEEe-CCeEEEECCCCCCCC--ceEEEEECCCCceEee-cCC
Q 018336          301 QFGTCRVEL-GGCTLVTGSGYQGGP--QEFYVVEGRNGKFRKF-DVP  343 (358)
Q Consensus       301 r~~~~~~~~-~~~i~v~gG~~~~~~--~~i~~yd~~~~~W~~~-~~p  343 (358)
                      |.+++++.+ +++|||+||......  +++|+||+++++|+++ .+|
T Consensus         2 R~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    2 RYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             -BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             cceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            667777777 599999999987643  8999999999999998 555

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=98.71  E-value=1.4e-05  Score=71.06  Aligned_cols=38  Identities=24%  Similarity=0.312  Sum_probs=34.4

Q ss_pred             CCCCCcHHHHHHHhccC-CcchhhhHHhhcHhHHHhhcC
Q 018336           26 LVPGLPEEISLECLTRL-HYSTHRVATRVSRRWRQLIQS   63 (358)
Q Consensus        26 ~~~~Lp~d~~~~il~rl-p~~~~~~~~~v~k~w~~l~~s   63 (358)
                      .|+.||+|++..|..|| ...++.+++.||++||+.+..
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            58999999999999999 577899999999999987764

>smart00612 Kelch Kelch domain

Probab=98.71  E-value=2.9e-08  Score=61.24  Aligned_cols=47  Identities=38%  Similarity=0.603  Sum_probs=40.4

Q ss_pred             EEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECC
Q 018336          139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNG  187 (358)
Q Consensus       139 ~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~  187 (358)
                      +||++||....  ...+++++||+.+++|+.+++|+.+|..++++.+++
T Consensus         1 ~iyv~GG~~~~--~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGG--QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCC--ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            48999998642  347899999999999999999999999999887764

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.65  E-value=1.8e-06  Score=72.47  Aligned_cols=162  Identities=16%  Similarity=0.174  Sum_probs=102.8

Q ss_pred             cceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCC----CceEecC-CCccCcCce
Q 018336          154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIK----DEWTELA-RMTQERDEC  228 (358)
Q Consensus       154 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t----~~W~~~~-~~p~~~~~~  228 (358)
                      .....+||+.|++++.+....-..+...+..-+|++.++||....   ...+..|++.+    ..|.+.+ .|..+|...
T Consensus        45 ~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYp  121 (243)
T PF07250_consen   45 PAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYP  121 (243)
T ss_pred             eEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcccccCCCccc
Confidence            345688999999999876433333333333358999999998653   35678888865    6798876 588899988


Q ss_pred             eEEE-ECCEEEEEeCcccCCCCceeeeeEEEECCC-C-----ceEEcCCccccCCCCCceeeeeecCccCceecccccee
Q 018336          229 EAVV-IGSEFWVVSGYKTERQGIFDESAESYQLGT-G-----EWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQ  301 (358)
Q Consensus       229 ~~~~-~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~-~-----~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r  301 (358)
                      +++. -||+++|+||....       ..+ |-|.. .     .|..+......  .+.                    .-
T Consensus       122 T~~~L~DG~vlIvGG~~~~-------t~E-~~P~~~~~~~~~~~~~l~~~~~~--~~~--------------------nl  171 (243)
T PF07250_consen  122 TATTLPDGRVLIVGGSNNP-------TYE-FWPPKGPGPGPVTLPFLSQTSDT--LPN--------------------NL  171 (243)
T ss_pred             cceECCCCCEEEEeCcCCC-------ccc-ccCCccCCCCceeeecchhhhcc--Ccc--------------------cc
Confidence            8774 58899999998622       122 33331 1     11111111000  000                    01


Q ss_pred             eceEEEEeCCeEEEECCCCCCCCceEEEEECCCCce-Eee-cCCCCccCceeeee
Q 018336          302 FGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKF-RKF-DVPAEYKGLVQSGC  354 (358)
Q Consensus       302 ~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W-~~~-~~p~~~~~~~~~~~  354 (358)
                      +.+....-+|+||+++..      .-.+||+.++++ +.+ .+|...+..-.+|.
T Consensus       172 YP~~~llPdG~lFi~an~------~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgs  220 (243)
T PF07250_consen  172 YPFVHLLPDGNLFIFANR------GSIIYDYKTNTVVRTLPDLPGGPRNYPASGS  220 (243)
T ss_pred             CceEEEcCCCCEEEEEcC------CcEEEeCCCCeEEeeCCCCCCCceecCCCcc
Confidence            233456678999999985      566789999987 666 78876544433443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN02772 guanylate kinase

Probab=98.59  E-value=4.4e-07  Score=80.88  Aligned_cols=83  Identities=17%  Similarity=0.216  Sum_probs=68.8

Q ss_pred             CCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecC---CCccCcCceeEEEE-CCEEEEEeCcccCCCCc
Q 018336          175 DNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA---RMTQERDECEAVVI-GSEFWVVSGYKTERQGI  250 (358)
Q Consensus       175 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~~~~~~~~~~-~~~lyv~gG~~~~~~~~  250 (358)
                      .++..++++.+++++||+||.++.....+.+++||..+++|....   ..|.+|.+|+++++ +++|+|+++....    
T Consensus        23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~----   98 (398)
T PLN02772         23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP----   98 (398)
T ss_pred             CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC----
Confidence            377889999999999999998876546789999999999999754   77889999999988 6789999876544    


Q ss_pred             eeeeeEEEECCC
Q 018336          251 FDESAESYQLGT  262 (358)
Q Consensus       251 ~~~~i~~yd~~~  262 (358)
                       ..++|.+.+.|
T Consensus        99 -~~~~w~l~~~t  109 (398)
T PLN02772         99 -DDSIWFLEVDT  109 (398)
T ss_pred             -ccceEEEEcCC
Confidence             35777777765

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.54  E-value=4.1e-06  Score=70.33  Aligned_cols=149  Identities=16%  Similarity=0.201  Sum_probs=99.6

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCC----CcEEeCC-CCCCCc
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTT----RRWTRGK-NMPDNR  177 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t----~~W~~~~-~~~~~~  177 (358)
                      .-..||+.+++++.+.....   . .+..++..-+|.+.+.||..+.    .+.+-.|++.+    ..|.+.+ .|..+|
T Consensus        47 ~s~~yD~~tn~~rpl~v~td---~-FCSgg~~L~dG~ll~tGG~~~G----~~~ir~~~p~~~~~~~~w~e~~~~m~~~R  118 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLTVQTD---T-FCSGGAFLPDGRLLQTGGDNDG----NKAIRIFTPCTSDGTCDWTESPNDMQSGR  118 (243)
T ss_pred             EEEEEecCCCcEEeccCCCC---C-cccCcCCCCCCCEEEeCCCCcc----ccceEEEecCCCCCCCCceECcccccCCC
Confidence            45569999999987754322   1 1222334458899999997543    45677888876    6798875 599999


Q ss_pred             eeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCC-----CceEecCC----CccCcCceeEEEECCEEEEEeCcccCC
Q 018336          178 SFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIK-----DEWTELAR----MTQERDECEAVVIGSEFWVVSGYKTER  247 (358)
Q Consensus       178 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t-----~~W~~~~~----~p~~~~~~~~~~~~~~lyv~gG~~~~~  247 (358)
                      .+.++..+ +|+++|+||....     ..+.+....     ..|..+..    .+...+-+..+.-+|+||+++..    
T Consensus       119 WYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~----  189 (243)
T PF07250_consen  119 WYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR----  189 (243)
T ss_pred             ccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC----
Confidence            99999887 7999999997732     233333321     12222221    23334444556679999999864    


Q ss_pred             CCceeeeeEEEECCCCce-EEcCCcccc
Q 018336          248 QGIFDESAESYQLGTGEW-KRAENAWKL  274 (358)
Q Consensus       248 ~~~~~~~i~~yd~~~~~W-~~~~~~p~~  274 (358)
                            ....||+.++++ ..++.+|..
T Consensus       190 ------~s~i~d~~~n~v~~~lP~lPg~  211 (243)
T PF07250_consen  190 ------GSIIYDYKTNTVVRTLPDLPGG  211 (243)
T ss_pred             ------CcEEEeCCCCeEEeeCCCCCCC
Confidence                  346799999987 788888753

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.46  E-value=8.2e-08  Score=59.52  Aligned_cols=44  Identities=32%  Similarity=0.488  Sum_probs=37.2

Q ss_pred             CCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHHHH
Q 018336           27 VPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQR   70 (358)
Q Consensus        27 ~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~~~   70 (358)
                      |..||+|++.+|+.+|+..++.+++.|||+|++++.++.+....
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            56799999999999999999999999999999999999876543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.42  E-value=2.5e-07  Score=55.17  Aligned_cols=39  Identities=46%  Similarity=0.765  Sum_probs=36.5

Q ss_pred             CcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHH
Q 018336           30 LPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYY   68 (358)
Q Consensus        30 Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~   68 (358)
                      ||+|++.+|+.+|+..++.+++.|||+|+.++..+.+.+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999887654

>PF13854 Kelch_5: Kelch motif

Probab=98.40  E-value=9.5e-07  Score=52.75  Aligned_cols=40  Identities=23%  Similarity=0.298  Sum_probs=35.7

Q ss_pred             CCCCceeeeeEEECCEEEEEcCcCC-CCCCCCeEEEEECCC
Q 018336          173 MPDNRSFFAAGELNGRVIIAGGHDE-NKTALSSAWAYDLIK  212 (358)
Q Consensus       173 ~~~~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t  212 (358)
                      +|.+|..|++++++++||++||.+. .....+++++||+.+
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence            4789999999999999999999984 556789999999976

>PLN02772 guanylate kinase

Probab=98.31  E-value=5.4e-06  Score=74.03  Aligned_cols=86  Identities=16%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             cCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceee
Q 018336          223 QERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQF  302 (358)
Q Consensus       223 ~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~  302 (358)
                      .++..+.++.+++++||+||....  +...+.+++||..+.+|.....+-.                       +|.+|.
T Consensus        23 ~~~~~~tav~igdk~yv~GG~~d~--~~~~~~v~i~D~~t~~W~~P~V~G~-----------------------~P~~r~   77 (398)
T PLN02772         23 KPKNRETSVTIGDKTYVIGGNHEG--NTLSIGVQILDKITNNWVSPIVLGT-----------------------GPKPCK   77 (398)
T ss_pred             CCCCcceeEEECCEEEEEcccCCC--ccccceEEEEECCCCcEecccccCC-----------------------CCCCCC
Confidence            366778899999999999997652  3357899999999999998776521                       122355


Q ss_pred             ceEEEEe-CCeEEEECCCCCCCCceEEEEECCC
Q 018336          303 GTCRVEL-GGCTLVTGSGYQGGPQEFYVVEGRN  334 (358)
Q Consensus       303 ~~~~~~~-~~~i~v~gG~~~~~~~~i~~yd~~~  334 (358)
                      +++++++ +++|+|+++..... .++|.+..++
T Consensus        78 GhSa~v~~~~rilv~~~~~~~~-~~~w~l~~~t  109 (398)
T PLN02772         78 GYSAVVLNKDRILVIKKGSAPD-DSIWFLEVDT  109 (398)
T ss_pred             cceEEEECCceEEEEeCCCCCc-cceEEEEcCC
Confidence            5666766 68999998754332 7888887654

>PF13854 Kelch_5: Kelch motif

Probab=98.30  E-value=2.3e-06  Score=51.08  Aligned_cols=41  Identities=20%  Similarity=0.421  Sum_probs=35.2

Q ss_pred             CccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCC
Q 018336          221 MTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGT  262 (358)
Q Consensus       221 ~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~  262 (358)
                      +|.+|.+|++++++++||++||... ......+++++||+.+
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence            4788999999999999999999985 3345689999999876

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.03  E-value=4.4e-05  Score=65.51  Aligned_cols=43  Identities=16%  Similarity=0.403  Sum_probs=39.5

Q ss_pred             CCCCc----HHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHHH
Q 018336           27 VPGLP----EEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQ   69 (358)
Q Consensus        27 ~~~Lp----~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~~   69 (358)
                      +..||    +++.+.||+.|...+++.+.+|||+|+.+++.+..++.
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk  121 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK  121 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence            45689    99999999999999999999999999999999988654

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.93  E-value=0.00095  Score=59.98  Aligned_cols=135  Identities=17%  Similarity=0.199  Sum_probs=90.8

Q ss_pred             ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCC----CeEEEE--E
Q 018336          136 SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTAL----SSAWAY--D  209 (358)
Q Consensus       136 ~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~----~~~~~y--d  209 (358)
                      .+.+|+.++..        ....+||..|..-...|.+..+.....++.++++||++..........    ..++++  +
T Consensus        75 ~gskIv~~d~~--------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~  146 (342)
T PF07893_consen   75 HGSKIVAVDQS--------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYR  146 (342)
T ss_pred             cCCeEEEEcCC--------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccc
Confidence            48899998663        358999999999988888888887788888899999998764332110    144554  4


Q ss_pred             C--------CCCceEecCCCccCcCc-------eeEEEE-CCEEEEEe-CcccCCCCceeeeeEEEECCCCceEEcCC--
Q 018336          210 L--------IKDEWTELARMTQERDE-------CEAVVI-GSEFWVVS-GYKTERQGIFDESAESYQLGTGEWKRAEN--  270 (358)
Q Consensus       210 ~--------~t~~W~~~~~~p~~~~~-------~~~~~~-~~~lyv~g-G~~~~~~~~~~~~i~~yd~~~~~W~~~~~--  270 (358)
                      .        ..-.|+.+++.|.....       .+-+++ +..|+|.. +..        ...++||.++.+|+.+..  
T Consensus       147 ~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~GdW~  218 (342)
T PF07893_consen  147 PPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHGDWM  218 (342)
T ss_pred             cccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeecccee
Confidence            1        23368888876654332       233455 44588743 221        236899999999999986  


Q ss_pred             ccccCCCCCceeeeeecCccCce
Q 018336          271 AWKLSQCPRSNVGVGREGKLFCW  293 (358)
Q Consensus       271 ~p~~~~~~~~~~~~~~d~~~~~W  293 (358)
                      ||..+   +    ..|+++.+.|
T Consensus       219 LPF~G---~----a~y~~el~~W  234 (342)
T PF07893_consen  219 LPFHG---Q----AEYVPELDLW  234 (342)
T ss_pred             cCcCC---c----cEECCCcCeE
Confidence            55322   2    2477788888

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=97.56  E-value=0.016  Score=49.01  Aligned_cols=107  Identities=14%  Similarity=0.222  Sum_probs=71.5

Q ss_pred             EEEEE-cCcCCCCCCCcceeEEEECCCCc--------EE---eCCCCCCCceeeeeEEE----CCEEEEEcCcCCCC---
Q 018336          139 KLVVM-GGWDPASYSPVSHVFVYDFTTRR--------WT---RGKNMPDNRSFFAAGEL----NGRVIIAGGHDENK---  199 (358)
Q Consensus       139 ~lyv~-Gg~~~~~~~~~~~~~~yd~~t~~--------W~---~~~~~~~~~~~~~~~~~----~~~iyv~GG~~~~~---  199 (358)
                      .-|++ ||..+ +.+-.+.+|+....+..        .+   .+..+|.+|+.|++.++    +...+++||.+.-.   
T Consensus        39 ~~YlIHGGrTP-NNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q  117 (337)
T PF03089_consen   39 EQYLIHGGRTP-NNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ  117 (337)
T ss_pred             eeEEecCCcCC-CcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccc
Confidence            45666 45443 33455677777654433        11   13578999999988765    23478889865311   


Q ss_pred             ----------CCCCeEEEEECCCCceEe--cCCCccCcCceeEEEECCEEEEEeCcccC
Q 018336          200 ----------TALSSAWAYDLIKDEWTE--LARMTQERDECEAVVIGSEFWVVSGYKTE  246 (358)
Q Consensus       200 ----------~~~~~~~~yd~~t~~W~~--~~~~p~~~~~~~~~~~~~~lyv~gG~~~~  246 (358)
                                .....|+..|++-+..+.  ++.+....+.|.+.+-++.+|++||..-.
T Consensus       118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~  176 (337)
T PF03089_consen  118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLE  176 (337)
T ss_pred             cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEcc
Confidence                      124467888988776653  55677777888888999999999998643

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.56  E-value=0.0066  Score=54.59  Aligned_cols=130  Identities=12%  Similarity=0.081  Sum_probs=80.9

Q ss_pred             ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCc--eeeeeEEE--EC
Q 018336          185 LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGI--FDESAESY--QL  260 (358)
Q Consensus       185 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~--~~~~i~~y--d~  260 (358)
                      .+.+|+.++..       ..+.+||.++..-...|.++.+.....++.++++||++..........  ....++++  ++
T Consensus        75 ~gskIv~~d~~-------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~  147 (342)
T PF07893_consen   75 HGSKIVAVDQS-------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRP  147 (342)
T ss_pred             cCCeEEEEcCC-------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccc
Confidence            48888888543       448999999999998888877766667778899999998765432110  00033343  31


Q ss_pred             ------CC--CceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEe-CCeEEE-ECCCCCCCCceEEEE
Q 018336          261 ------GT--GEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVEL-GGCTLV-TGSGYQGGPQEFYVV  330 (358)
Q Consensus       261 ------~~--~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~-~~~i~v-~gG~~~~~~~~i~~y  330 (358)
                            ..  -.|+.++..|... ..+..                  .+...+.+++ |..|+| +-+..    ..-|.|
T Consensus       148 ~~~~~~~~~~w~W~~LP~PPf~~-~~~~~------------------~~~i~sYavv~g~~I~vS~~~~~----~GTysf  204 (342)
T PF07893_consen  148 PPDDPSPEESWSWRSLPPPPFVR-DRRYS------------------DYRITSYAVVDGRTIFVSVNGRR----WGTYSF  204 (342)
T ss_pred             ccccccCCCcceEEcCCCCCccc-cCCcc------------------cceEEEEEEecCCeEEEEecCCc----eEEEEE
Confidence                  11  2456655543211 00000                  0003345566 778888 55432    368999


Q ss_pred             ECCCCceEee---cCCC
Q 018336          331 EGRNGKFRKF---DVPA  344 (358)
Q Consensus       331 d~~~~~W~~~---~~p~  344 (358)
                      |.++.+|+++   .||.
T Consensus       205 Dt~~~~W~~~GdW~LPF  221 (342)
T PF07893_consen  205 DTESHEWRKHGDWMLPF  221 (342)
T ss_pred             EcCCcceeeccceecCc
Confidence            9999999999   6774

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.34  E-value=0.075  Score=44.96  Aligned_cols=171  Identities=18%  Similarity=0.243  Sum_probs=101.3

Q ss_pred             ceEEEEeCCCCC--eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EE-eCCCCCC-
Q 018336          102 YGVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WT-RGKNMPD-  175 (358)
Q Consensus       102 ~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~-~~~~~~~-  175 (358)
                      ..+.++|+.+++  |+.-.  +.+     ........++.||+...        .+.++.+|..+.+  |+ .....+. 
T Consensus        46 ~~l~~~d~~tG~~~W~~~~--~~~-----~~~~~~~~~~~v~v~~~--------~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   46 GNLYALDAKTGKVLWRFDL--PGP-----ISGAPVVDGGRVYVGTS--------DGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             SEEEEEETTTSEEEEEEEC--SSC-----GGSGEEEETTEEEEEET--------TSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             CEEEEEECCCCCEEEEeec--ccc-----ccceeeecccccccccc--------eeeeEecccCCcceeeeecccccccc
Confidence            478999998886  55443  321     11234677889988863        2379999987764  87 3433222 


Q ss_pred             -CceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc--eEecCCCccCcC--------ceeEEEECCEEEEEeCcc
Q 018336          176 -NRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE--WTELARMTQERD--------ECEAVVIGSEFWVVSGYK  244 (358)
Q Consensus       176 -~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~~~--------~~~~~~~~~~lyv~gG~~  244 (358)
                       .......+..++.+|+...       ...+.++|+++++  |+.-...+....        ....+..++.+|+..+..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g  183 (238)
T PF13360_consen  111 GVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG  183 (238)
T ss_dssp             STB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred             ccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence             2233344445777777643       3569999998764  775433433211        123334467888886542


Q ss_pred             cCCCCceeeeeEEEECCCCc--eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCC
Q 018336          245 TERQGIFDESAESYQLGTGE--WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQG  322 (358)
Q Consensus       245 ~~~~~~~~~~i~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~  322 (358)
                               .+..+|..+++  |+....-.                              .......++.||+.. ..  
T Consensus       184 ---------~~~~~d~~tg~~~w~~~~~~~------------------------------~~~~~~~~~~l~~~~-~~--  221 (238)
T PF13360_consen  184 ---------RVVAVDLATGEKLWSKPISGI------------------------------YSLPSVDGGTLYVTS-SD--  221 (238)
T ss_dssp             ---------SEEEEETTTTEEEEEECSS-E------------------------------CECEECCCTEEEEEE-TT--
T ss_pred             ---------eEEEEECCCCCEEEEecCCCc------------------------------cCCceeeCCEEEEEe-CC--
Confidence                     24566999886  84431110                              011345677777777 32  


Q ss_pred             CCceEEEEECCCCc--eE
Q 018336          323 GPQEFYVVEGRNGK--FR  338 (358)
Q Consensus       323 ~~~~i~~yd~~~~~--W~  338 (358)
                        ..++.+|+.+++  |+
T Consensus       222 --~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  222 --GRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             --TEEEEEETTTTEEEEE
T ss_pred             --CEEEEEECCCCCEEeE
Confidence              589999999887  65

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.30  E-value=0.14  Score=47.18  Aligned_cols=202  Identities=13%  Similarity=0.121  Sum_probs=109.3

Q ss_pred             eEEEEeCCCCC--eeecCCCCCC---C-CCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCC--cEEeCCCCC
Q 018336          103 GVTVFDPVSLT--WDRLGPVPEY---P-AGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTR--RWTRGKNMP  174 (358)
Q Consensus       103 ~~~~~d~~~~~--W~~~~~~~~~---~-~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~  174 (358)
                      .+.++|..+++  |+.-..-...   . .........+..++.||+.+.        ...++.+|..|.  .|+.-.+  
T Consensus        80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~--------~g~l~ald~~tG~~~W~~~~~--  149 (394)
T PRK11138         80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE--------KGQVYALNAEDGEVAWQTKVA--  149 (394)
T ss_pred             eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC--------CCEEEEEECCCCCCcccccCC--
Confidence            68899987665  8653221100   0 000112235566888887543        236999999876  4765322  


Q ss_pred             CCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc--eEecCCCcc--CcCceeEEEECCEEEEEeCcccCCCCc
Q 018336          175 DNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE--WTELARMTQ--ERDECEAVVIGSEFWVVSGYKTERQGI  250 (358)
Q Consensus       175 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--~~~~~~~~~~~~~lyv~gG~~~~~~~~  250 (358)
                      .+ ...+.++.++.+|+..+       ...++.+|.++++  |+.-...|.  .+...+-++.++.+|+..+        
T Consensus       150 ~~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~--------  213 (394)
T PRK11138        150 GE-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD--------  213 (394)
T ss_pred             Cc-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC--------
Confidence            11 12223456788887532       2469999998775  886443222  1122334456777777543        


Q ss_pred             eeeeeEEEECCCC--ceEEcCCcccc----------CCCC-----Ccee------eeeecCccC--ceec-cccceeece
Q 018336          251 FDESAESYQLGTG--EWKRAENAWKL----------SQCP-----RSNV------GVGREGKLF--CWAE-TEAAVQFGT  304 (358)
Q Consensus       251 ~~~~i~~yd~~~~--~W~~~~~~p~~----------~~~~-----~~~~------~~~~d~~~~--~W~~-lp~~~r~~~  304 (358)
                       ...+..+|..++  .|+.-...|..          ...+     +.++      ...+|.++.  .|.. ++    ...
T Consensus       214 -~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~----~~~  288 (394)
T PRK11138        214 -NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG----SVN  288 (394)
T ss_pred             -CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC----Ccc
Confidence             224677888876  47642211100          0000     0000      014565543  4632 22    112


Q ss_pred             EEEEeCCeEEEECCCCCCCCceEEEEECCCCc--eEee
Q 018336          305 CRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK--FRKF  340 (358)
Q Consensus       305 ~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~--W~~~  340 (358)
                      ..+..+++||+....     ..++.+|+.+++  |+.-
T Consensus       289 ~~~~~~~~vy~~~~~-----g~l~ald~~tG~~~W~~~  321 (394)
T PRK11138        289 DFAVDGGRIYLVDQN-----DRVYALDTRGGVELWSQS  321 (394)
T ss_pred             CcEEECCEEEEEcCC-----CeEEEEECCCCcEEEccc
Confidence            456678899987654     589999998765  8653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.20  E-value=0.15  Score=47.13  Aligned_cols=134  Identities=17%  Similarity=0.266  Sum_probs=77.6

Q ss_pred             eEEEEeCCCCC--eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCC--C
Q 018336          103 GVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPD--N  176 (358)
Q Consensus       103 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~  176 (358)
                      .+.++|..+++  |+.-..  ..     .....+..++.+|+..+        ...++.+|+.+.+  |+.-...+.  .
T Consensus       131 ~l~ald~~tG~~~W~~~~~--~~-----~~ssP~v~~~~v~v~~~--------~g~l~ald~~tG~~~W~~~~~~~~~~~  195 (394)
T PRK11138        131 QVYALNAEDGEVAWQTKVA--GE-----ALSRPVVSDGLVLVHTS--------NGMLQALNESDGAVKWTVNLDVPSLTL  195 (394)
T ss_pred             EEEEEECCCCCCcccccCC--Cc-----eecCCEEECCEEEEECC--------CCEEEEEEccCCCEeeeecCCCCcccc
Confidence            68899987764  764322  11     11233455788887544        2369999998875  766433221  1


Q ss_pred             ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceEecCCCccC--------cCceeEEEECCEEEEEeCcccC
Q 018336          177 RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD--EWTELARMTQE--------RDECEAVVIGSEFWVVSGYKTE  246 (358)
Q Consensus       177 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~--------~~~~~~~~~~~~lyv~gG~~~~  246 (358)
                      +...+.+..++.+|+..+       ...+..+|.+++  .|+.-...|..        .....-++.++.+|+.+.    
T Consensus       196 ~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~----  264 (394)
T PRK11138        196 RGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY----  264 (394)
T ss_pred             cCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc----
Confidence            122233445677776532       135888888876  48743211211        011234567899998752    


Q ss_pred             CCCceeeeeEEEECCCCc--eEE
Q 018336          247 RQGIFDESAESYQLGTGE--WKR  267 (358)
Q Consensus       247 ~~~~~~~~i~~yd~~~~~--W~~  267 (358)
                           ...+.++|+.+++  |+.
T Consensus       265 -----~g~l~ald~~tG~~~W~~  282 (394)
T PRK11138        265 -----NGNLVALDLRSGQIVWKR  282 (394)
T ss_pred             -----CCeEEEEECCCCCEEEee
Confidence                 2357899998874  875

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=97.18  E-value=0.011  Score=51.27  Aligned_cols=122  Identities=18%  Similarity=0.318  Sum_probs=72.6

Q ss_pred             EEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecC
Q 018336          141 VVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA  219 (358)
Q Consensus       141 yv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~  219 (358)
                      ||-|-+.....-....+..||..+.+|.....--.. .-..+... ++++|+.|-....+.....+-.||..+++|..++
T Consensus         2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~   80 (281)
T PF12768_consen    2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLG   80 (281)
T ss_pred             EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecC
Confidence            455544433211356899999999999987543111 11222223 6788888765544334577999999999999887


Q ss_pred             C-C----ccCcCceeEEEECC-EEEEEeCcccCCCCceeeeeEEEECCCCceEEcCC
Q 018336          220 R-M----TQERDECEAVVIGS-EFWVVSGYKTERQGIFDESAESYQLGTGEWKRAEN  270 (358)
Q Consensus       220 ~-~----p~~~~~~~~~~~~~-~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~  270 (358)
                      . .    |.+.........++ ++++.|.. ...    ...+..|  +..+|+.+..
T Consensus        81 ~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~-~~g----~~~l~~~--dGs~W~~i~~  130 (281)
T PF12768_consen   81 GGSSNSIPGPVTALTFISNDGSNFWVAGRS-ANG----STFLMKY--DGSSWSSIGS  130 (281)
T ss_pred             CcccccCCCcEEEEEeeccCCceEEEecee-cCC----CceEEEE--cCCceEeccc
Confidence            5 2    33322111112233 46766655 222    3345566  5668999987

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.03  E-value=0.075  Score=45.45  Aligned_cols=188  Identities=15%  Similarity=0.134  Sum_probs=100.6

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCC-----
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMP-----  174 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-----  174 (358)
                      ..++.+|+.++.-..+.... +       .+++..  ++.+|+...         ....++|+.+++++.+...+     
T Consensus        22 ~~i~~~~~~~~~~~~~~~~~-~-------~G~~~~~~~g~l~v~~~---------~~~~~~d~~~g~~~~~~~~~~~~~~   84 (246)
T PF08450_consen   22 GRIYRVDPDTGEVEVIDLPG-P-------NGMAFDRPDGRLYVADS---------GGIAVVDPDTGKVTVLADLPDGGVP   84 (246)
T ss_dssp             TEEEEEETTTTEEEEEESSS-E-------EEEEEECTTSEEEEEET---------TCEEEEETTTTEEEEEEEEETTCSC
T ss_pred             CEEEEEECCCCeEEEEecCC-C-------ceEEEEccCCEEEEEEc---------CceEEEecCCCcEEEEeeccCCCcc
Confidence            47899999988765432222 1       133333  688888765         24567799999998876542     


Q ss_pred             CCceeeeeEEECCEEEEEcCcCCCCCCC--CeEEEEECCCCceEecC-CCccCcCceeEE-EECC-EEEEEeCcccCCCC
Q 018336          175 DNRSFFAAGELNGRVIIAGGHDENKTAL--SSAWAYDLIKDEWTELA-RMTQERDECEAV-VIGS-EFWVVSGYKTERQG  249 (358)
Q Consensus       175 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~--~~~~~yd~~t~~W~~~~-~~p~~~~~~~~~-~~~~-~lyv~gG~~~~~~~  249 (358)
                      ..+.+-.++.-+|.+|+.--........  ..++.+++. ++.+.+. .+..   ..+++ .-++ .||+.--.      
T Consensus        85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~---pNGi~~s~dg~~lyv~ds~------  154 (246)
T PF08450_consen   85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF---PNGIAFSPDGKTLYVADSF------  154 (246)
T ss_dssp             TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS---EEEEEEETTSSEEEEEETT------
T ss_pred             cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc---ccceEECCcchheeecccc------
Confidence            2233334444578888864322111111  568999998 5555443 2211   12233 3344 47776432      


Q ss_pred             ceeeeeEEEECCCC--ceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceE
Q 018336          250 IFDESAESYQLGTG--EWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEF  327 (358)
Q Consensus       250 ~~~~~i~~yd~~~~--~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i  327 (358)
                        ...|++||+...  ++.......... ....                    .-...++-.+|+|||..-..    ..|
T Consensus       155 --~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~g--------------------~pDG~~vD~~G~l~va~~~~----~~I  207 (246)
T PF08450_consen  155 --NGRIWRFDLDADGGELSNRRVFIDFP-GGPG--------------------YPDGLAVDSDGNLWVADWGG----GRI  207 (246)
T ss_dssp             --TTEEEEEEEETTTCCEEEEEEEEE-S-SSSC--------------------EEEEEEEBTTS-EEEEEETT----TEE
T ss_pred             --cceeEEEeccccccceeeeeeEEEcC-CCCc--------------------CCCcceEcCCCCEEEEEcCC----CEE
Confidence              346888888643  243222210000 0000                    00112344578999973211    589


Q ss_pred             EEEECCCCceEeecCC
Q 018336          328 YVVEGRNGKFRKFDVP  343 (358)
Q Consensus       328 ~~yd~~~~~W~~~~~p  343 (358)
                      ++||++...-..+.+|
T Consensus       208 ~~~~p~G~~~~~i~~p  223 (246)
T PF08450_consen  208 VVFDPDGKLLREIELP  223 (246)
T ss_dssp             EEEETTSCEEEEEE-S
T ss_pred             EEECCCccEEEEEcCC
Confidence            9999996667777777

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.97  E-value=0.19  Score=42.51  Aligned_cols=182  Identities=19%  Similarity=0.225  Sum_probs=103.4

Q ss_pred             eEEEEeCCCCC--eeecCCCCCCCCCCCceeE-EEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCCc
Q 018336          103 GVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQ-VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDNR  177 (358)
Q Consensus       103 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~-~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~  177 (358)
                      .+.++|+.+++  |+.-.  ....   ..... .+..++.+|+..+        ...++++|+.+.+  |+.-.  +.+.
T Consensus         4 ~l~~~d~~tG~~~W~~~~--~~~~---~~~~~~~~~~~~~v~~~~~--------~~~l~~~d~~tG~~~W~~~~--~~~~   68 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDL--GPGI---GGPVATAVPDGGRVYVASG--------DGNLYALDAKTGKVLWRFDL--PGPI   68 (238)
T ss_dssp             EEEEEETTTTEEEEEEEC--SSSC---SSEEETEEEETTEEEEEET--------TSEEEEEETTTSEEEEEEEC--SSCG
T ss_pred             EEEEEECCCCCEEEEEEC--CCCC---CCccceEEEeCCEEEEEcC--------CCEEEEEECCCCCEEEEeec--cccc
Confidence            57788887775  76522  1111   11111 3447889999854        4589999998875  55433  2222


Q ss_pred             eeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceE-ecCCCccC--cCceeEEEECCEEEEEeCcccCCCCcee
Q 018336          178 SFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD--EWT-ELARMTQE--RDECEAVVIGSEFWVVSGYKTERQGIFD  252 (358)
Q Consensus       178 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~-~~~~~p~~--~~~~~~~~~~~~lyv~gG~~~~~~~~~~  252 (358)
                      ... ....++.+|+...       ...++.+|..++  .|+ .....+..  .......+.++.+|+...         .
T Consensus        69 ~~~-~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~  131 (238)
T PF13360_consen   69 SGA-PVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS---------S  131 (238)
T ss_dssp             GSG-EEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET---------C
T ss_pred             cce-eeecccccccccc-------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec---------c
Confidence            111 4667899988852       137999998766  598 34332222  222334455777777753         2


Q ss_pred             eeeEEEECCCCc--eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEE
Q 018336          253 ESAESYQLGTGE--WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVV  330 (358)
Q Consensus       253 ~~i~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~y  330 (358)
                      ..+.++|+.+++  |+.-...+... .. ....                .......+..++.+|+..+..     .+..+
T Consensus       132 g~l~~~d~~tG~~~w~~~~~~~~~~-~~-~~~~----------------~~~~~~~~~~~~~v~~~~~~g-----~~~~~  188 (238)
T PF13360_consen  132 GKLVALDPKTGKLLWKYPVGEPRGS-SP-ISSF----------------SDINGSPVISDGRVYVSSGDG-----RVVAV  188 (238)
T ss_dssp             SEEEEEETTTTEEEEEEESSTT-SS----EEEE----------------TTEEEEEECCTTEEEEECCTS-----SEEEE
T ss_pred             CcEEEEecCCCcEEEEeecCCCCCC-cc-eeee----------------cccccceEEECCEEEEEcCCC-----eEEEE
Confidence            367899999874  77644332110 00 0000                011233445578999988763     36666


Q ss_pred             ECCCCc--eEe
Q 018336          331 EGRNGK--FRK  339 (358)
Q Consensus       331 d~~~~~--W~~  339 (358)
                      |..+++  |+.
T Consensus       189 d~~tg~~~w~~  199 (238)
T PF13360_consen  189 DLATGEKLWSK  199 (238)
T ss_dssp             ETTTTEEEEEE
T ss_pred             ECCCCCEEEEe
Confidence            999887  844

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.00051  Score=58.52  Aligned_cols=43  Identities=21%  Similarity=0.287  Sum_probs=38.8

Q ss_pred             CCCCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhH
Q 018336           25 ELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFY   67 (358)
Q Consensus        25 ~~~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~   67 (358)
                      ..|-+||||+++.||+.|+.+.+.++..|||+|+.+..+...+
T Consensus        96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW  138 (419)
T KOG2120|consen   96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW  138 (419)
T ss_pred             CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence            3478999999999999999999999999999999998877653

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=96.91  E-value=0.22  Score=42.40  Aligned_cols=127  Identities=20%  Similarity=0.293  Sum_probs=73.9

Q ss_pred             CCCCCCCCCCCceeEEEEE--CC--EEEEEcCcCC--------CCC----CCcceeEEEECCCCcEE--eCCCCCCCcee
Q 018336          118 GPVPEYPAGLPLFCQVASS--QG--KLVVMGGWDP--------ASY----SPVSHVFVYDFTTRRWT--RGKNMPDNRSF  179 (358)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~--~~--~lyv~Gg~~~--------~~~----~~~~~~~~yd~~t~~W~--~~~~~~~~~~~  179 (358)
                      ..+|.+    |+.|.+.++  .|  -+.+|||..-        .+|    ++.-.++..|+.-+-..  .+|.+......
T Consensus        82 GdvP~a----RYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SF  157 (337)
T PF03089_consen   82 GDVPEA----RYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSF  157 (337)
T ss_pred             CCCCcc----cccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEE
Confidence            455654    445555444  33  3678888631        111    23346788888877664  37788888999


Q ss_pred             eeeEEECCEEEEEcCcCCCCC-CCCeEEEEEC--CC-CceEecCCCccCcCceeEE---EECCEEEEEeCcccCCC
Q 018336          180 FAAGELNGRVIIAGGHDENKT-ALSSAWAYDL--IK-DEWTELARMTQERDECEAV---VIGSEFWVVSGYKTERQ  248 (358)
Q Consensus       180 ~~~~~~~~~iyv~GG~~~~~~-~~~~~~~yd~--~t-~~W~~~~~~p~~~~~~~~~---~~~~~lyv~gG~~~~~~  248 (358)
                      |.+..-++.+|++||..-..+ ....++....  -- .-...+.-++......++.   .-...+.++||+....+
T Consensus       158 Hvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQ  233 (337)
T PF03089_consen  158 HVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQ  233 (337)
T ss_pred             EEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccce
Confidence            999999999999999864322 2333433322  11 1223333344443333332   22356888899876654

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.81  E-value=0.39  Score=43.93  Aligned_cols=170  Identities=19%  Similarity=0.266  Sum_probs=91.6

Q ss_pred             eEEEEeCCCCC--eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCC--C
Q 018336          103 GVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPD--N  176 (358)
Q Consensus       103 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--~  176 (358)
                      .++++|+.+++  |+.-..  ..     .....+..++.+|+..+        ...++.+|+.+.+  |+.-...+.  .
T Consensus       116 ~l~ald~~tG~~~W~~~~~--~~-----~~~~p~v~~~~v~v~~~--------~g~l~a~d~~tG~~~W~~~~~~~~~~~  180 (377)
T TIGR03300       116 EVIALDAEDGKELWRAKLS--SE-----VLSPPLVANGLVVVRTN--------DGRLTALDAATGERLWTYSRVTPALTL  180 (377)
T ss_pred             EEEEEECCCCcEeeeeccC--ce-----eecCCEEECCEEEEECC--------CCeEEEEEcCCCceeeEEccCCCceee
Confidence            56777776554  643221  10     11122334666666433        2368899987664  765322211  1


Q ss_pred             ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceEecCCCccCc--------CceeEEEECCEEEEEeCcccC
Q 018336          177 RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD--EWTELARMTQER--------DECEAVVIGSEFWVVSGYKTE  246 (358)
Q Consensus       177 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~~--------~~~~~~~~~~~lyv~gG~~~~  246 (358)
                      +.....+..++.+|+. ..      ...+..+|++++  .|+.-...+...        .....+..++.+|+...    
T Consensus       181 ~~~~sp~~~~~~v~~~-~~------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~----  249 (377)
T TIGR03300       181 RGSASPVIADGGVLVG-FA------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY----  249 (377)
T ss_pred             cCCCCCEEECCEEEEE-CC------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc----
Confidence            1122334456665543 21      136889998776  486432222110        11233456888888652    


Q ss_pred             CCCceeeeeEEEECCCCc--eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCC
Q 018336          247 RQGIFDESAESYQLGTGE--WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGP  324 (358)
Q Consensus       247 ~~~~~~~~i~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~  324 (358)
                           ...+++||+++++  |..-...                               ....+..+++||+....     
T Consensus       250 -----~g~l~a~d~~tG~~~W~~~~~~-------------------------------~~~p~~~~~~vyv~~~~-----  288 (377)
T TIGR03300       250 -----QGRVAALDLRSGRVLWKRDASS-------------------------------YQGPAVDDNRLYVTDAD-----  288 (377)
T ss_pred             -----CCEEEEEECCCCcEEEeeccCC-------------------------------ccCceEeCCEEEEECCC-----
Confidence                 2357889998764  7543110                               00124568899887643     


Q ss_pred             ceEEEEECCCCc--eEe
Q 018336          325 QEFYVVEGRNGK--FRK  339 (358)
Q Consensus       325 ~~i~~yd~~~~~--W~~  339 (358)
                      ..++.+|..+++  |+.
T Consensus       289 G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       289 GVVVALDRRSGSELWKN  305 (377)
T ss_pred             CeEEEEECCCCcEEEcc
Confidence            478899987664  865

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=96.48  E-value=0.11  Score=45.20  Aligned_cols=78  Identities=9%  Similarity=0.213  Sum_probs=50.3

Q ss_pred             EEEcCcCCCCC-CCCeEEEEECCCCceEecCCCccCcCceeEEEE-CCEEEEEeCcccCCCCceeeeeEEEECCCCceEE
Q 018336          190 IIAGGHDENKT-ALSSAWAYDLIKDEWTELARMTQERDECEAVVI-GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKR  267 (358)
Q Consensus       190 yv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~  267 (358)
                      ||-|-.+..+. .-..+..||+.+.+|..+..--.. .-..+... +++||+.|-+....  .....+..||.++.+|+.
T Consensus         2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~--~~~~~la~yd~~~~~w~~   78 (281)
T PF12768_consen    2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNG--TNSSNLATYDFKNQTWSS   78 (281)
T ss_pred             EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECC--CCceeEEEEecCCCeeee
Confidence            44444444332 346799999999999987643111 11223333 77788888665332  125578899999999998


Q ss_pred             cCC
Q 018336          268 AEN  270 (358)
Q Consensus       268 ~~~  270 (358)
                      +..
T Consensus        79 ~~~   81 (281)
T PF12768_consen   79 LGG   81 (281)
T ss_pred             cCC
Confidence            876

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=96.47  E-value=0.0025  Score=54.61  Aligned_cols=45  Identities=11%  Similarity=0.216  Sum_probs=39.4

Q ss_pred             CCCCcHHHHHHHhccCC-----cchhhhHHhhcHhHHHhhcChhhHHHHH
Q 018336           27 VPGLPEEISLECLTRLH-----YSTHRVATRVSRRWRQLIQSRDFYYQRK   71 (358)
Q Consensus        27 ~~~Lp~d~~~~il~rlp-----~~~~~~~~~v~k~w~~l~~s~~f~~~~~   71 (358)
                      |+-||+|++++||.++-     ..++.++.+|||.|.-....|+++....
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC  156 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC  156 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence            45799999999999864     4889999999999999999999987643

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.38  E-value=0.49  Score=40.39  Aligned_cols=110  Identities=12%  Similarity=0.032  Sum_probs=74.6

Q ss_pred             EEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEEC
Q 018336          132 QVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDL  210 (358)
Q Consensus       132 ~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~  210 (358)
                      ++.. .++.+|.--|..+     .+.+..||+.|++-....++|..-..=+.+.++++||.+=      -......+||.
T Consensus        49 GL~~~~~g~LyESTG~yG-----~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLT------Wk~~~~f~yd~  117 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLYG-----QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLT------WKEGTGFVYDP  117 (264)
T ss_dssp             EEEEEETTEEEEEECSTT-----EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEE------SSSSEEEEEET
T ss_pred             cEEecCCCEEEEeCCCCC-----cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEE------ecCCeEEEEcc
Confidence            4444 5788888877543     4589999999998776667777667777888999999982      12467899999


Q ss_pred             CCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          211 IKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       211 ~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      .+  .+.+..++.+..+-+++.-+..|++.-|.         +.++..||++-
T Consensus       118 ~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDGS---------~~L~~~dP~~f  159 (264)
T PF05096_consen  118 NT--LKKIGTFPYPGEGWGLTSDGKRLIMSDGS---------SRLYFLDPETF  159 (264)
T ss_dssp             TT--TEEEEEEE-SSS--EEEECSSCEEEE-SS---------SEEEEE-TTT-
T ss_pred             cc--ceEEEEEecCCcceEEEcCCCEEEEECCc---------cceEEECCccc
Confidence            76  56666666655666777767778888773         46778888754

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.26  E-value=0.91  Score=41.53  Aligned_cols=180  Identities=17%  Similarity=0.144  Sum_probs=97.0

Q ss_pred             eEEEEeCCCCC--eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCCce
Q 018336          103 GVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDNRS  178 (358)
Q Consensus       103 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~  178 (358)
                      .+.+||+.+++  |+.-..-..       ..+.+..++.+|+.+.        ...++.+|..+.+  |+.-..  .. .
T Consensus        76 ~v~a~d~~tG~~~W~~~~~~~~-------~~~p~v~~~~v~v~~~--------~g~l~ald~~tG~~~W~~~~~--~~-~  137 (377)
T TIGR03300        76 TVVALDAETGKRLWRVDLDERL-------SGGVGADGGLVFVGTE--------KGEVIALDAEDGKELWRAKLS--SE-V  137 (377)
T ss_pred             eEEEEEccCCcEeeeecCCCCc-------ccceEEcCCEEEEEcC--------CCEEEEEECCCCcEeeeeccC--ce-e
Confidence            68999988775  764322211       1134455777886543        2379999987764  765321  11 1


Q ss_pred             eeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceEecCCCcc--CcCceeEEEECCEEEEEeCcccCCCCceeee
Q 018336          179 FFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD--EWTELARMTQ--ERDECEAVVIGSEFWVVSGYKTERQGIFDES  254 (358)
Q Consensus       179 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~--~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~  254 (358)
                      ....+..++.+|+..+       ...++++|++++  .|+.-...+.  .+.....++.++.+|+ +..        ...
T Consensus       138 ~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~--------~g~  201 (377)
T TIGR03300       138 LSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFA--------GGK  201 (377)
T ss_pred             ecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECC--------CCE
Confidence            2223445777777532       245899999876  4875332221  1122334566776554 321        235


Q ss_pred             eEEEECCCC--ceEEcCCccccCC-CCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEE
Q 018336          255 AESYQLGTG--EWKRAENAWKLSQ-CPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVE  331 (358)
Q Consensus       255 i~~yd~~~~--~W~~~~~~p~~~~-~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd  331 (358)
                      +..+|+.++  .|+.-...+.... ..+.                   .....+....++.||+....     ..++.||
T Consensus       202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~-------------------~~~~~~p~~~~~~vy~~~~~-----g~l~a~d  257 (377)
T TIGR03300       202 LVALDLQTGQPLWEQRVALPKGRTELERL-------------------VDVDGDPVVDGGQVYAVSYQ-----GRVAALD  257 (377)
T ss_pred             EEEEEccCCCEeeeeccccCCCCCchhhh-------------------hccCCccEEECCEEEEEEcC-----CEEEEEE
Confidence            788999876  4764322111000 0000                   00111234567888886543     4789999


Q ss_pred             CCCCc--eEee
Q 018336          332 GRNGK--FRKF  340 (358)
Q Consensus       332 ~~~~~--W~~~  340 (358)
                      +++++  |+.-
T Consensus       258 ~~tG~~~W~~~  268 (377)
T TIGR03300       258 LRSGRVLWKRD  268 (377)
T ss_pred             CCCCcEEEeec
Confidence            88765  7653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=96.14  E-value=0.073  Score=40.49  Aligned_cols=89  Identities=10%  Similarity=0.173  Sum_probs=60.0

Q ss_pred             EEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeC
Q 018336          231 VVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELG  310 (358)
Q Consensus       231 ~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~  310 (358)
                      +.+||.+|..+.....    ....|.+||..+++|+.+..+.... ..                      .....++.++
T Consensus         2 icinGvly~~a~~~~~----~~~~IvsFDv~~E~f~~i~~P~~~~-~~----------------------~~~~~L~~~~   54 (129)
T PF08268_consen    2 ICINGVLYWLAWSEDS----DNNVIVSFDVRSEKFRFIKLPEDPY-SS----------------------DCSSTLIEYK   54 (129)
T ss_pred             EEECcEEEeEEEECCC----CCcEEEEEEcCCceEEEEEeeeeec-cc----------------------cCccEEEEeC
Confidence            5689999988866211    2568999999999998777530000 11                      1234568899


Q ss_pred             CeEEEECCCCCCC--CceEEEE-ECCCCceEee--cCCCCc
Q 018336          311 GCTLVTGSGYQGG--PQEFYVV-EGRNGKFRKF--DVPAEY  346 (358)
Q Consensus       311 ~~i~v~gG~~~~~--~~~i~~y-d~~~~~W~~~--~~p~~~  346 (358)
                      |+|.++.-.....  .-++|++ |.++++|.+.  .+|...
T Consensus        55 G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~~~lp~~~   95 (129)
T PF08268_consen   55 GKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKHIVLPPSW   95 (129)
T ss_pred             CeEEEEEecCCCCcceEEEEEeeccccceEEEEEEECChHH
Confidence            9999986654332  2688888 5667889887  466543

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=95.60  E-value=2.1  Score=40.31  Aligned_cols=104  Identities=14%  Similarity=0.149  Sum_probs=59.5

Q ss_pred             ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336          155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG  234 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~  234 (358)
                      ..+|++|..+++-+.+...+..........-+..|++....+.    ...++.+|..++..+.+...... .......-+
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~-~~~p~wSpD  316 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAI-DTEPSWHPD  316 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCC-ccceEECCC
Confidence            4799999998887776654432222222122445665532221    25799999999988877643211 111122335


Q ss_pred             CE-EEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336          235 SE-FWVVSGYKTERQGIFDESAESYQLGTGEWKRAE  269 (358)
Q Consensus       235 ~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~  269 (358)
                      |+ |++.....    +  ...++.+|..+++++.+.
T Consensus       317 G~~I~f~s~~~----g--~~~Iy~~dl~~g~~~~Lt  346 (448)
T PRK04792        317 GKSLIFTSERG----G--KPQIYRVNLASGKVSRLT  346 (448)
T ss_pred             CCEEEEEECCC----C--CceEEEEECCCCCEEEEe
Confidence            55 44443221    1  246888999998888764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.36  E-value=2.8  Score=40.31  Aligned_cols=119  Identities=17%  Similarity=0.223  Sum_probs=69.1

Q ss_pred             EEEECCEEEEEcCcCCCCCCCcceeEEEECCCC--cEEeCCCCCCC--------ceeeeeEEECCEEEEEcCcCCCCCCC
Q 018336          133 VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTR--RWTRGKNMPDN--------RSFFAAGELNGRVIIAGGHDENKTAL  202 (358)
Q Consensus       133 ~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~--------~~~~~~~~~~~~iyv~GG~~~~~~~~  202 (358)
                      -+..++.||+...        ...++.+|..|.  .|+.-...+..        ....+.++.++++|+...       -
T Consensus        65 Pvv~~g~vyv~s~--------~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------d  129 (527)
T TIGR03075        65 PLVVDGVMYVTTS--------YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------D  129 (527)
T ss_pred             CEEECCEEEEECC--------CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------C
Confidence            4456899998654        236888888875  47754332211        112234566788887521       2


Q ss_pred             CeEEEEECCCCc--eEecC-CCccC-cCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc--eEEcC
Q 018336          203 SSAWAYDLIKDE--WTELA-RMTQE-RDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE--WKRAE  269 (358)
Q Consensus       203 ~~~~~yd~~t~~--W~~~~-~~p~~-~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~~~  269 (358)
                      ..+.++|.+|++  |+.-. ..... ....+-++.+++||+-......   .....+.+||.++++  |+.-.
T Consensus       130 g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~---~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       130 ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEF---GVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeeccccc---CCCcEEEEEECCCCceeEeccC
Confidence            469999998774  87532 22211 1122345778888775422111   124578999999875  77544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>cd00094 HX Hemopexin-like repeats

Probab=95.28  E-value=1.4  Score=36.21  Aligned_cols=153  Identities=12%  Similarity=0.084  Sum_probs=80.0

Q ss_pred             EEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcE--EeC----CCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCe
Q 018336          132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRW--TRG----KNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSS  204 (358)
Q Consensus       132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W--~~~----~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~  204 (358)
                      ++....+.+|++-|         +.+|+++......  +.+    +.+|.+ ...+.... ++++|++-|        +.
T Consensus        11 A~~~~~g~~y~FkG---------~~~w~~~~~~~~~~p~~I~~~w~~~p~~-IDAa~~~~~~~~~yfFkg--------~~   72 (194)
T cd00094          11 AVTTLRGELYFFKG---------RYFWRLSPGKPPGSPFLISSFWPSLPSP-VDAAFERPDTGKIYFFKG--------DK   72 (194)
T ss_pred             eEEEeCCEEEEEeC---------CEEEEEeCCCCCCCCeEhhhhCCCCCCC-ccEEEEECCCCEEEEECC--------CE
Confidence            55566799999976         2688888652111  112    112221 11122222 378999855        35


Q ss_pred             EEEEECCCCceE---ecC--CCccCcCce-eEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCC
Q 018336          205 AWAYDLIKDEWT---ELA--RMTQERDEC-EAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQ  276 (358)
Q Consensus       205 ~~~yd~~t~~W~---~~~--~~p~~~~~~-~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~  276 (358)
                      .+.|+..+..+.   .+.  ..|...... ++...  ++++|++.|.          ..+.||..+++...  ..|    
T Consensus        73 yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~----------~y~ry~~~~~~v~~--~yP----  136 (194)
T cd00094          73 YWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD----------KYWRYDEKTQKMDP--GYP----  136 (194)
T ss_pred             EEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC----------EEEEEeCCCccccC--CCC----
Confidence            777776542221   111  111100111 22233  6889999864          34678876554321  111    


Q ss_pred             CCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          277 CPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       277 ~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                        +.        -.+.|..+|..  ..++....++++|++-|      +..|+||..+++
T Consensus       137 --~~--------i~~~w~g~p~~--idaa~~~~~~~~yfF~g------~~y~~~d~~~~~  178 (194)
T cd00094         137 --KL--------IETDFPGVPDK--VDAAFRWLDGYYYFFKG------DQYWRFDPRSKE  178 (194)
T ss_pred             --cc--------hhhcCCCcCCC--cceeEEeCCCcEEEEEC------CEEEEEeCccce
Confidence              10        11245445432  22333444589999998      589999998876

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.24  E-value=0.65  Score=39.68  Aligned_cols=110  Identities=12%  Similarity=0.054  Sum_probs=73.0

Q ss_pred             eeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEE
Q 018336          181 AAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQ  259 (358)
Q Consensus       181 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd  259 (358)
                      +... .++.+|.--|..+    .+.+..||+++++-....++|...++-+++.++++||.+-=.        .....+||
T Consensus        49 GL~~~~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk--------~~~~f~yd  116 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK--------EGTGFVYD  116 (264)
T ss_dssp             EEEEEETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS--------SSEEEEEE
T ss_pred             cEEecCCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec--------CCeEEEEc
Confidence            3444 4788888766543    368999999999887777888888888899999999999632        23567899


Q ss_pred             CCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCC
Q 018336          260 LGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNG  335 (358)
Q Consensus       260 ~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~  335 (358)
                      .++  .+.+...+...                          .+=+++..+..|++--|.     +.++.+||++-
T Consensus       117 ~~t--l~~~~~~~y~~--------------------------EGWGLt~dg~~Li~SDGS-----~~L~~~dP~~f  159 (264)
T PF05096_consen  117 PNT--LKKIGTFPYPG--------------------------EGWGLTSDGKRLIMSDGS-----SRLYFLDPETF  159 (264)
T ss_dssp             TTT--TEEEEEEE-SS--------------------------S--EEEECSSCEEEE-SS-----SEEEEE-TTT-
T ss_pred             ccc--ceEEEEEecCC--------------------------cceEEEcCCCEEEEECCc-----cceEEECCccc
Confidence            875  56666554321                          122346677788888776     58888888753

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=95.16  E-value=1.1  Score=40.79  Aligned_cols=135  Identities=13%  Similarity=0.110  Sum_probs=75.3

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCE-EEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCC----
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGK-LVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN----  176 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~----  176 (358)
                      ..++..|-..+.  .+..+.....  +...+...-+|. ..+.+|.       ..-++.||..+.+-.++.++-..    
T Consensus       237 lrifqvDGk~N~--~lqS~~l~~f--Pi~~a~f~p~G~~~i~~s~r-------rky~ysyDle~ak~~k~~~~~g~e~~~  305 (514)
T KOG2055|consen  237 LRIFQVDGKVNP--KLQSIHLEKF--PIQKAEFAPNGHSVIFTSGR-------RKYLYSYDLETAKVTKLKPPYGVEEKS  305 (514)
T ss_pred             EEEEEecCccCh--hheeeeeccC--ccceeeecCCCceEEEeccc-------ceEEEEeeccccccccccCCCCcccch
Confidence            456667777665  3333222111  122233333444 6666653       34689999999998887654321    


Q ss_pred             ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeE
Q 018336          177 RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAE  256 (358)
Q Consensus       177 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~  256 (358)
                      ...|.....+. +.++-|..      ..+......|+.|..--.++..........-...||+.||.         ..|+
T Consensus       306 ~e~FeVShd~~-fia~~G~~------G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~---------GeV~  369 (514)
T KOG2055|consen  306 MERFEVSHDSN-FIAIAGNN------GHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT---------GEVY  369 (514)
T ss_pred             hheeEecCCCC-eEEEcccC------ceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC---------ceEE
Confidence            23344444445 44444443      34888888888887544444433333333333447777764         3678


Q ss_pred             EEECCCC
Q 018336          257 SYQLGTG  263 (358)
Q Consensus       257 ~yd~~~~  263 (358)
                      +||+..+
T Consensus       370 v~nl~~~  376 (514)
T KOG2055|consen  370 VWNLRQN  376 (514)
T ss_pred             EEecCCc
Confidence            9999887

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=95.10  E-value=2.8  Score=38.84  Aligned_cols=147  Identities=14%  Similarity=0.070  Sum_probs=77.7

Q ss_pred             ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336          155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG  234 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~  234 (358)
                      ..++++|..+++-..+...+..........-+..|++....+.    ...++.+|..++..+.+......... ....-+
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~~~-~~~s~d  288 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGIDTE-PSWSPD  288 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCCCC-EEECCC
Confidence            5799999998877666544332222221112345665533221    25799999998887776543321111 112235


Q ss_pred             CE-EEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeE
Q 018336          235 SE-FWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCT  313 (358)
Q Consensus       235 ~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i  313 (358)
                      |+ |++.....+      ...++.+|..++.++.+.....   .   ...                     .....+++.
T Consensus       289 g~~l~~~s~~~g------~~~iy~~d~~~~~~~~l~~~~~---~---~~~---------------------~~~spdg~~  335 (417)
T TIGR02800       289 GKSIAFTSDRGG------SPQIYMMDADGGEVRRLTFRGG---Y---NAS---------------------PSWSPDGDL  335 (417)
T ss_pred             CCEEEEEECCCC------CceEEEEECCCCCEEEeecCCC---C---ccC---------------------eEECCCCCE
Confidence            55 444432211      2368889998888776643210   0   000                     112334555


Q ss_pred             EEECCCCCCCCceEEEEECCCCceEee
Q 018336          314 LVTGSGYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       314 ~v~gG~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                      +++..... ....++++|+.++.++.+
T Consensus       336 i~~~~~~~-~~~~i~~~d~~~~~~~~l  361 (417)
T TIGR02800       336 IAFVHREG-GGFNIAVMDLDGGGERVL  361 (417)
T ss_pred             EEEEEccC-CceEEEEEeCCCCCeEEc
Confidence            55544322 225788999888766665

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=95.05  E-value=0.44  Score=43.24  Aligned_cols=147  Identities=18%  Similarity=0.118  Sum_probs=84.4

Q ss_pred             CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee---eeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          138 GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF---FAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       138 ~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~---~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      --+.+.+|.++.     -.++-.|-.+|.  .+.++-..++-   ...+..+....+++|..      .-++.||.++.+
T Consensus       225 ~plllvaG~d~~-----lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr------ky~ysyDle~ak  291 (514)
T KOG2055|consen  225 APLLLVAGLDGT-----LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR------KYLYSYDLETAK  291 (514)
T ss_pred             CceEEEecCCCc-----EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccc------eEEEEeeccccc
Confidence            457788887642     255666666665  44443332222   22222334366666644      349999999999


Q ss_pred             eEecCCCcc---CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccC
Q 018336          215 WTELARMTQ---ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLF  291 (358)
Q Consensus       215 W~~~~~~p~---~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~  291 (358)
                      -.++.++..   .-...-.+..++.+.++.|..        .-|......+++|-.--.++  +   +.           
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~--------G~I~lLhakT~eli~s~Kie--G---~v-----------  347 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN--------GHIHLLHAKTKELITSFKIE--G---VV-----------  347 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCCeEEEcccC--------ceEEeehhhhhhhhheeeec--c---EE-----------
Confidence            888875432   112222456677777777764        34566777777774322221  1   00           


Q ss_pred             ceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          292 CWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       292 ~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                                ........+-.|+++||.     ..||++|..++.
T Consensus       348 ----------~~~~fsSdsk~l~~~~~~-----GeV~v~nl~~~~  377 (514)
T KOG2055|consen  348 ----------SDFTFSSDSKELLASGGT-----GEVYVWNLRQNS  377 (514)
T ss_pred             ----------eeEEEecCCcEEEEEcCC-----ceEEEEecCCcc
Confidence                      111223345567788887     489999999885

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=94.91  E-value=1.6  Score=37.26  Aligned_cols=160  Identities=17%  Similarity=0.175  Sum_probs=89.2

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCC-----CcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTT-----RRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLI  211 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t-----~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~  211 (358)
                      .+++|++.+..+      +.+..|....     ++....-.+|.+..+.+.++++|.+|.--.      ....+..||+.
T Consensus        30 ~~~iy~~~~~~~------~~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~------~s~~IvkydL~   97 (250)
T PF02191_consen   30 SEKIYVTSGFSG------NTVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLT   97 (250)
T ss_pred             CCCEEEECccCC------CEEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec------CCceEEEEECc
Confidence            456888877543      2556654332     223333346666677778889999998632      35789999999


Q ss_pred             CCceE---ecCCC------ccCcCce---eEEEECCEEEEEeCcccCCCCceeeeeEEEECCC----CceEEcCCccccC
Q 018336          212 KDEWT---ELARM------TQERDEC---EAVVIGSEFWVVSGYKTERQGIFDESAESYQLGT----GEWKRAENAWKLS  275 (358)
Q Consensus       212 t~~W~---~~~~~------p~~~~~~---~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~----~~W~~~~~~p~~~  275 (358)
                      +++-.   .++..      |....++   ..++-++-|+|+=.......   .-.+-..|+.+    .+|..--..    
T Consensus        98 t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g---~ivvskld~~tL~v~~tw~T~~~k----  170 (250)
T PF02191_consen   98 TRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG---NIVVSKLDPETLSVEQTWNTSYPK----  170 (250)
T ss_pred             CCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC---cEEEEeeCcccCceEEEEEeccCc----
Confidence            87644   45422      1111111   12333344666643322211   12344455554    346532111    


Q ss_pred             CCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336          276 QCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       276 ~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                                               +....++.+=|.||++.........-.+.||..+++=+.+
T Consensus       171 -------------------------~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~  210 (250)
T PF02191_consen  171 -------------------------RSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDV  210 (250)
T ss_pred             -------------------------hhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceece
Confidence                                     1122345555899999877654445668899998876666

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.91  E-value=2.1  Score=36.57  Aligned_cols=209  Identities=11%  Similarity=0.078  Sum_probs=107.5

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCc--ee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNR--SF  179 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~--~~  179 (358)
                      .+-..||.+++=...+.-....     -|.+++ -++..++.-+        ...+-++|+.+..-++.+ +|..+  .+
T Consensus        84 aiGhLdP~tGev~~ypLg~Ga~-----Phgiv~gpdg~~Witd~--------~~aI~R~dpkt~evt~f~-lp~~~a~~n  149 (353)
T COG4257          84 AIGHLDPATGEVETYPLGSGAS-----PHGIVVGPDGSAWITDT--------GLAIGRLDPKTLEVTRFP-LPLEHADAN  149 (353)
T ss_pred             cceecCCCCCceEEEecCCCCC-----CceEEECCCCCeeEecC--------cceeEEecCcccceEEee-cccccCCCc
Confidence            3445777777765554322211     122222 2455555533        236888888877665543 23333  23


Q ss_pred             eeeEEEC--CEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE-EECCEEEEEeCcccCCCCceeeeeE
Q 018336          180 FAAGELN--GRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV-VIGSEFWVVSGYKTERQGIFDESAE  256 (358)
Q Consensus       180 ~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~  256 (358)
                      .-.++++  +.+++.|-....+       .+|+.++.-+..+ .|+......+| .-||.+|+..=.        -+.|.
T Consensus       150 let~vfD~~G~lWFt~q~G~yG-------rLdPa~~~i~vfp-aPqG~gpyGi~atpdGsvwyasla--------gnaia  213 (353)
T COG4257         150 LETAVFDPWGNLWFTGQIGAYG-------RLDPARNVISVFP-APQGGGPYGICATPDGSVWYASLA--------GNAIA  213 (353)
T ss_pred             ccceeeCCCccEEEeeccccce-------ecCcccCceeeec-cCCCCCCcceEECCCCcEEEEecc--------ccceE
Confidence            3334453  6777776432221       4566666555444 33433334444 567888877321        12234


Q ss_pred             EEECCCCceEEcCCccc-c--------CCCCCc-------eeeeeecCccCceec--cccc-eeeceEEEEeCCeEEEEC
Q 018336          257 SYQLGTGEWKRAENAWK-L--------SQCPRS-------NVGVGREGKLFCWAE--TEAA-VQFGTCRVELGGCTLVTG  317 (358)
Q Consensus       257 ~yd~~~~~W~~~~~~p~-~--------~~~~~~-------~~~~~~d~~~~~W~~--lp~~-~r~~~~~~~~~~~i~v~g  317 (358)
                      ..|+.+..=+++...-. .        .+..|.       .....||+...+|.+  ||.. .|-+..-+---+++++--
T Consensus       214 ridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~se  293 (353)
T COG4257         214 RIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSE  293 (353)
T ss_pred             EcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeec
Confidence            45555443333322110 0        001111       111279999999955  4444 344444444556676632


Q ss_pred             CCCCCCCceEEEEECCCCceEeecCCCC
Q 018336          318 SGYQGGPQEFYVVEGRNGKFRKFDVPAE  345 (358)
Q Consensus       318 G~~~~~~~~i~~yd~~~~~W~~~~~p~~  345 (358)
                      -..    +.|.+||+++.+.+++++|.+
T Consensus       294 a~a----gai~rfdpeta~ftv~p~pr~  317 (353)
T COG4257         294 ADA----GAIGRFDPETARFTVLPIPRP  317 (353)
T ss_pred             ccc----CceeecCcccceEEEecCCCC
Confidence            211    689999999999999866644

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=94.81  E-value=3.4  Score=39.65  Aligned_cols=43  Identities=26%  Similarity=0.502  Sum_probs=38.5

Q ss_pred             CCCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHH
Q 018336           26 LVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYY   68 (358)
Q Consensus        26 ~~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~   68 (358)
                      .++.||.++...||..|+.+++..++.||+.|+.++.+-....
T Consensus       107 fi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~  149 (537)
T KOG0274|consen  107 FLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW  149 (537)
T ss_pred             hhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence            4678999999999999999999999999999999987776554

>PRK04792 tolB translocation protein TolB; Provisional

Probab=94.75  E-value=3.7  Score=38.60  Aligned_cols=149  Identities=13%  Similarity=0.068  Sum_probs=79.3

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      ..++.+|..+++-..+...+...     ......- +..|++....++     ..+++++|..+++.+.+..-.......
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g~~-----~~~~wSPDG~~La~~~~~~g-----~~~Iy~~dl~tg~~~~lt~~~~~~~~p  311 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPGIN-----GAPRFSPDGKKLALVLSKDG-----QPEIYVVDIATKALTRITRHRAIDTEP  311 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCCCc-----CCeeECCCCCEEEEEEeCCC-----CeEEEEEECCCCCeEECccCCCCccce
Confidence            35778888877766665544311     1112222 345655433221     347999999999888775432211111


Q ss_pred             eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336          181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQL  260 (358)
Q Consensus       181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~  260 (358)
                      ....-+..|++......    ...++.+|..++.++.+..-. .........-+|+.+++.+....     ...++.+|+
T Consensus       312 ~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~g-----~~~I~~~dl  381 (448)
T PRK04792        312 SWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTNG-----KFNIARQDL  381 (448)
T ss_pred             EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecCC-----ceEEEEEEC
Confidence            11112344555532221    257999999999888775211 11111223335554333332211     236888999


Q ss_pred             CCCceEEcCC
Q 018336          261 GTGEWKRAEN  270 (358)
Q Consensus       261 ~~~~W~~~~~  270 (358)
                      .+++.+.+..
T Consensus       382 ~~g~~~~lt~  391 (448)
T PRK04792        382 ETGAMQVLTS  391 (448)
T ss_pred             CCCCeEEccC
Confidence            9988777653

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=94.50  E-value=2.2  Score=36.36  Aligned_cols=113  Identities=17%  Similarity=0.040  Sum_probs=66.9

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++.||+..-.       ...++.+|+.+.+-..+....    ..+++..  ++.+|+...        .....+|+.+++
T Consensus        11 ~g~l~~~D~~-------~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~   71 (246)
T PF08450_consen   11 DGRLYWVDIP-------GGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGK   71 (246)
T ss_dssp             TTEEEEEETT-------TTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET--------TCEEEEETTTTE
T ss_pred             CCEEEEEEcC-------CCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc--------CceEEEecCCCc
Confidence            5778887532       358999999998765532222    3334443  688888853        235667999999


Q ss_pred             eEecCCCcc-----CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336          215 WTELARMTQ-----ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAE  269 (358)
Q Consensus       215 W~~~~~~p~-----~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~  269 (358)
                      ++.+...+.     .+..-.++--+|+||+..-............++++++. ++...+.
T Consensus        72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~  130 (246)
T PF08450_consen   72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA  130 (246)
T ss_dssp             EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE
T ss_pred             EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe
Confidence            998775532     22222233447888887532221111111678999999 6655544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=93.93  E-value=0.88  Score=34.49  Aligned_cols=84  Identities=8%  Similarity=0.023  Sum_probs=56.2

Q ss_pred             EEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCC---ccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEE-
Q 018336          183 GELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM---TQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESY-  258 (358)
Q Consensus       183 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~y-  258 (358)
                      +.++|.+|...-..  ......+.+||..+++|+.+..+   ........++.++|+|-++.-.....  ...-.+++. 
T Consensus         2 icinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLe   77 (129)
T PF08268_consen    2 ICINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLE   77 (129)
T ss_pred             EEECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC--cceEEEEEee
Confidence            45788899887651  22357899999999999987642   33445567789999998876443221  113456666 


Q ss_pred             ECCCCceEEcCC
Q 018336          259 QLGTGEWKRAEN  270 (358)
Q Consensus       259 d~~~~~W~~~~~  270 (358)
                      |.++.+|++...
T Consensus        78 D~~k~~Wsk~~~   89 (129)
T PF08268_consen   78 DYEKQEWSKKHI   89 (129)
T ss_pred             ccccceEEEEEE
Confidence            455678987654

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=93.85  E-value=5.6  Score=37.08  Aligned_cols=147  Identities=11%  Similarity=0.085  Sum_probs=77.7

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEEC-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~  181 (358)
                      .++.+|..+++-..+...+...     ......-+ ..|++....++     ..+++++|..++..+.+..-+..-....
T Consensus       224 ~l~~~~l~~g~~~~l~~~~g~~-----~~~~~SpDG~~la~~~~~~g-----~~~Iy~~d~~~~~~~~lt~~~~~~~~~~  293 (430)
T PRK00178        224 RIFVQNLDTGRREQITNFEGLN-----GAPAWSPDGSKLAFVLSKDG-----NPEIYVMDLASRQLSRVTNHPAIDTEPF  293 (430)
T ss_pred             EEEEEECCCCCEEEccCCCCCc-----CCeEECCCCCEEEEEEccCC-----CceEEEEECCCCCeEEcccCCCCcCCeE
Confidence            5777788777766665443211     11112223 44544332211     2479999999998887754322111111


Q ss_pred             eEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCE-EEEEeCcccCCCCceeeeeEEEEC
Q 018336          182 AGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSE-FWVVSGYKTERQGIFDESAESYQL  260 (358)
Q Consensus       182 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~-lyv~gG~~~~~~~~~~~~i~~yd~  260 (358)
                      ...-+..|++......    ...++.+|..++.++.+.... .........-+|+ |++.....    +  ...++.+|+
T Consensus       294 ~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~----~--~~~l~~~dl  362 (430)
T PRK00178        294 WGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQD----G--NFHVAAQDL  362 (430)
T ss_pred             ECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccC----C--ceEEEEEEC
Confidence            1112345665532211    247899999988887765221 1111112233444 54443221    1  235889999


Q ss_pred             CCCceEEcCC
Q 018336          261 GTGEWKRAEN  270 (358)
Q Consensus       261 ~~~~W~~~~~  270 (358)
                      .++..+.+..
T Consensus       363 ~tg~~~~lt~  372 (430)
T PRK00178        363 QRGSVRILTD  372 (430)
T ss_pred             CCCCEEEccC
Confidence            9988877754

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.54  E-value=4.6  Score=35.02  Aligned_cols=181  Identities=14%  Similarity=0.105  Sum_probs=98.0

Q ss_pred             ecCCCCCCCCCCCceeEEEEECCEEEEEcCcC-------CC-C-------CCCcceeEEEECCCCcEEeC--CCCCCCce
Q 018336          116 RLGPVPEYPAGLPLFCQVASSQGKLVVMGGWD-------PA-S-------YSPVSHVFVYDFTTRRWTRG--KNMPDNRS  178 (358)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~-------~~-~-------~~~~~~~~~yd~~t~~W~~~--~~~~~~~~  178 (358)
                      .+.+.|..  +--.+.++..+++.||. ||+-       +. .       .+..+.+..||..+++-+.+  ..+-.+..
T Consensus        27 lvG~~P~S--GGDTYNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~  103 (339)
T PF09910_consen   27 LVGPPPTS--GGDTYNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTK  103 (339)
T ss_pred             eccCCCCC--CCccceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccc
Confidence            44444433  22346677777888875 5541       10 0       02356789999998874432  12222222


Q ss_pred             eeeeE---E---ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCcee
Q 018336          179 FFAAG---E---LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFD  252 (358)
Q Consensus       179 ~~~~~---~---~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~  252 (358)
                      ..+-+   .   +++.+++.=+-.   ...--++..|..++.=+.+..-|...   ...+.|-.+|-+  .....   -.
T Consensus       104 WaGEVSdIlYdP~~D~LLlAR~DG---h~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~~---g~  172 (339)
T PF09910_consen  104 WAGEVSDILYDPYEDRLLLARADG---HANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFHK---GV  172 (339)
T ss_pred             cccchhheeeCCCcCEEEEEecCC---cceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--ccccc---CC
Confidence            22211   1   367888874322   22345788888888888877665542   244445445533  11111   16


Q ss_pred             eeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEEC
Q 018336          253 ESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEG  332 (358)
Q Consensus       253 ~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~  332 (358)
                      ..+++||+.+++|.. ...+.....-.                -+...+...+++...|++|.+-+      ..+.+.||
T Consensus       173 ~~i~~~Dli~~~~~~-e~f~~~~s~Dg----------------~~~~~~~~G~~~s~ynR~faF~r------GGi~vgnP  229 (339)
T PF09910_consen  173 SGIHCLDLISGKWVI-ESFDVSLSVDG----------------GPVIRPELGAMASAYNRLFAFVR------GGIFVGNP  229 (339)
T ss_pred             ceEEEEEccCCeEEE-EecccccCCCC----------------CceEeeccccEEEEeeeEEEEEe------ccEEEeCC
Confidence            689999999999933 32221110000                11112455667888888888743      25677777


Q ss_pred             C
Q 018336          333 R  333 (358)
Q Consensus       333 ~  333 (358)
                      .
T Consensus       230 ~  230 (339)
T PF09910_consen  230 Y  230 (339)
T ss_pred             C
Confidence            6

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=93.44  E-value=4.8  Score=36.36  Aligned_cols=192  Identities=17%  Similarity=0.121  Sum_probs=95.3

Q ss_pred             cceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECC--CCcEEeCCCCCCCce
Q 018336          101 SYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT--TRRWTRGKNMPDNRS  178 (358)
Q Consensus       101 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~--t~~W~~~~~~~~~~~  178 (358)
                      ....+.||..++++..+........  +.+.+...-++.||+......    ....+..|...  +.+.+.+...+..-.
T Consensus        14 gI~~~~~d~~~g~l~~~~~~~~~~~--Ps~l~~~~~~~~LY~~~e~~~----~~g~v~~~~i~~~~g~L~~~~~~~~~g~   87 (345)
T PF10282_consen   14 GIYVFRFDEETGTLTLVQTVAEGEN--PSWLAVSPDGRRLYVVNEGSG----DSGGVSSYRIDPDTGTLTLLNSVPSGGS   87 (345)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEESSS--ECCEEE-TTSSEEEEEETTSS----TTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred             cEEEEEEcCCCCCceEeeeecCCCC--CceEEEEeCCCEEEEEEcccc----CCCCEEEEEECCCcceeEEeeeeccCCC
Confidence            4567778889999987654322111  223233335678999876420    12355555544  457777655442222


Q ss_pred             eeeeEEE---CCEEEEEcCcCCCCCCCCeEEEEECCCC-ceEecC---------CCc--cC-cCceeEEEE-CCE-EEEE
Q 018336          179 FFAAGEL---NGRVIIAGGHDENKTALSSAWAYDLIKD-EWTELA---------RMT--QE-RDECEAVVI-GSE-FWVV  240 (358)
Q Consensus       179 ~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~---------~~p--~~-~~~~~~~~~-~~~-lyv~  240 (358)
                      ..+...+   +..+|+.- +.     ...+.+|++..+ +-....         +-+  +. ...|.+..- +++ +|+.
T Consensus        88 ~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~  161 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP  161 (345)
T ss_dssp             CEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred             CcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence            2233333   45566652 11     246888888763 322221         111  11 112334333 444 6665


Q ss_pred             eCcccCCCCceeeeeEEEECCCCc--eEEcCCc--cccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEE
Q 018336          241 SGYKTERQGIFDESAESYQLGTGE--WKRAENA--WKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVT  316 (358)
Q Consensus       241 gG~~~~~~~~~~~~i~~yd~~~~~--W~~~~~~--p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~  316 (358)
                      . ..       .+.|.+|+.....  .......  |. +..||..                       ....-+..+||+
T Consensus       162 d-lG-------~D~v~~~~~~~~~~~l~~~~~~~~~~-G~GPRh~-----------------------~f~pdg~~~Yv~  209 (345)
T PF10282_consen  162 D-LG-------ADRVYVYDIDDDTGKLTPVDSIKVPP-GSGPRHL-----------------------AFSPDGKYAYVV  209 (345)
T ss_dssp             E-TT-------TTEEEEEEE-TTS-TEEEEEEEECST-TSSEEEE-----------------------EE-TTSSEEEEE
T ss_pred             e-cC-------CCEEEEEEEeCCCceEEEeecccccc-CCCCcEE-----------------------EEcCCcCEEEEe
Confidence            3 11       4567778777654  6553322  11 1122211                       112234578888


Q ss_pred             CCCCCCCCceEEEEECC--CCceEee
Q 018336          317 GSGYQGGPQEFYVVEGR--NGKFRKF  340 (358)
Q Consensus       317 gG~~~~~~~~i~~yd~~--~~~W~~~  340 (358)
                      ....    +.|.+|+..  +.+++.+
T Consensus       210 ~e~s----~~v~v~~~~~~~g~~~~~  231 (345)
T PF10282_consen  210 NELS----NTVSVFDYDPSDGSLTEI  231 (345)
T ss_dssp             ETTT----TEEEEEEEETTTTEEEEE
T ss_pred             cCCC----CcEEEEeecccCCceeEE
Confidence            7665    566666555  7777776

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=93.36  E-value=7  Score=36.60  Aligned_cols=104  Identities=13%  Similarity=0.072  Sum_probs=58.3

Q ss_pred             ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336          155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG  234 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~  234 (358)
                      ..++++|..+++.+.+...+..........-+..|++....+.    ...++.+|..++.-+.+...+.... .....-+
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spD  300 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPD  300 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCccC-ceeEcCC
Confidence            5899999999988877655433222222222345555432221    3579999999888777764332111 1222335


Q ss_pred             CE-EEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336          235 SE-FWVVSGYKTERQGIFDESAESYQLGTGEWKRAE  269 (358)
Q Consensus       235 ~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~  269 (358)
                      |+ |++.....    +  ...++.+|..+++.+.+.
T Consensus       301 G~~i~f~s~~~----g--~~~Iy~~d~~g~~~~~lt  330 (435)
T PRK05137        301 GSQIVFESDRS----G--SPQLYVMNADGSNPRRIS  330 (435)
T ss_pred             CCEEEEEECCC----C--CCeEEEEECCCCCeEEee
Confidence            55 44332111    1  236788898877766654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=93.29  E-value=4.4  Score=36.15  Aligned_cols=101  Identities=16%  Similarity=0.167  Sum_probs=64.8

Q ss_pred             ceeEEEECCCC-----cEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc-eEecCCCccCcCce
Q 018336          155 SHVFVYDFTTR-----RWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE-WTELARMTQERDEC  228 (358)
Q Consensus       155 ~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~p~~~~~~  228 (358)
                      ..+.+|+....     +.+.+.....+-.-.+.+.+++++.+..|        ..+.+|+..... +.....+..+....
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~~~i~  133 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSPFYIT  133 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BSSSEE
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecceEEEE
Confidence            67999999885     55555443333334566667888766654        468899998777 88877666655666


Q ss_pred             eEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCC
Q 018336          229 EAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAEN  270 (358)
Q Consensus       229 ~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~  270 (358)
                      .+.++++.|++-.-..       .-.+..|+....+-..++.
T Consensus       134 sl~~~~~~I~vgD~~~-------sv~~~~~~~~~~~l~~va~  168 (321)
T PF03178_consen  134 SLSVFKNYILVGDAMK-------SVSLLRYDEENNKLILVAR  168 (321)
T ss_dssp             EEEEETTEEEEEESSS-------SEEEEEEETTTE-EEEEEE
T ss_pred             EEeccccEEEEEEccc-------CEEEEEEEccCCEEEEEEe
Confidence            6778888766554332       1234567776666666664

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PRK04922 tolB translocation protein TolB; Provisional

Probab=93.22  E-value=7.3  Score=36.44  Aligned_cols=104  Identities=13%  Similarity=0.050  Sum_probs=57.2

Q ss_pred             ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336          155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG  234 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~  234 (358)
                      ..++++|..+++-+.+...+..........-+..|++....+.    ...++++|+.++.-+.+........ .....-+
T Consensus       228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~spD  302 (433)
T PRK04922        228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFGIDT-EPTWAPD  302 (433)
T ss_pred             cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCCCcc-ceEECCC
Confidence            4799999998888777655432211111112345655432221    2579999999887776653322111 1122335


Q ss_pred             CE-EEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336          235 SE-FWVVSGYKTERQGIFDESAESYQLGTGEWKRAE  269 (358)
Q Consensus       235 ~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~  269 (358)
                      |+ |++.....+      ...++.+|..+++.+.+.
T Consensus       303 G~~l~f~sd~~g------~~~iy~~dl~~g~~~~lt  332 (433)
T PRK04922        303 GKSIYFTSDRGG------RPQIYRVAASGGSAERLT  332 (433)
T ss_pred             CCEEEEEECCCC------CceEEEEECCCCCeEEee
Confidence            55 444432211      236788898888877664

>smart00284 OLF Olfactomedin-like domains

Probab=92.88  E-value=5.5  Score=34.05  Aligned_cols=144  Identities=9%  Similarity=-0.050  Sum_probs=82.3

Q ss_pred             CCEEEEEcCcCCCCCCCCeEEEEEC----CCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECC
Q 018336          186 NGRVIIAGGHDENKTALSSAWAYDL----IKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLG  261 (358)
Q Consensus       186 ~~~iyv~GG~~~~~~~~~~~~~yd~----~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~  261 (358)
                      ++++|++.+....   ...+..|..    ..+.+.+.-.+|.+-.+.+.++.||.+|.--..        ...|.+||+.
T Consensus        34 ~~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~--------s~~iiKydL~  102 (255)
T smart00284       34 KSLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFN--------SHDICRFDLT  102 (255)
T ss_pred             CceEEEEccccCC---CcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecC--------CccEEEEECC
Confidence            4567877655311   244666643    344444444577778888899999999986533        4578999999


Q ss_pred             CCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCC-CCceEEEEECCCCc----
Q 018336          262 TGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQG-GPQEFYVVEGRNGK----  336 (358)
Q Consensus       262 ~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~-~~~~i~~yd~~~~~----  336 (358)
                      +++-.....+|...-..+...         .|.     .....-+++-++-|+||=....+ +.-.|-.+|+.+-+    
T Consensus       103 t~~v~~~~~Lp~a~y~~~~~Y---------~~~-----~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~t  168 (255)
T smart00284      103 TETYQKEPLLNGAGYNNRFPY---------AWG-----GFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENT  168 (255)
T ss_pred             CCcEEEEEecCcccccccccc---------ccC-----CCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEE
Confidence            997655454543210000000         000     00122346677888887444333 22445578887655    


Q ss_pred             eEeecCCCCccCceeeeeE
Q 018336          337 FRKFDVPAEYKGLVQSGCC  355 (358)
Q Consensus       337 W~~~~~p~~~~~~~~~~~~  355 (358)
                      |.. .+|....+-+|-.|.
T Consensus       169 W~T-~~~k~sa~naFmvCG  186 (255)
T smart00284      169 WIT-TYNKRSASNAFMICG  186 (255)
T ss_pred             EEc-CCCcccccccEEEee
Confidence            555 466666666666664

>PRK04043 tolB translocation protein TolB; Provisional

Probab=92.87  E-value=8.1  Score=36.00  Aligned_cols=105  Identities=10%  Similarity=0.075  Sum_probs=61.2

Q ss_pred             ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336          155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG  234 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~  234 (358)
                      .++|++|..+++=+.+...+..-.......-+.+|.+.-....    ...++.+|..++.++.+...+.. .......-|
T Consensus       213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~SPD  287 (419)
T PRK04043        213 PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPGI-DVNGNFVED  287 (419)
T ss_pred             CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCCc-cCccEECCC
Confidence            3789999988877776543322111111112335555433221    36899999999999988755431 111223334


Q ss_pred             C-EEEEEeCcccCCCCceeeeeEEEECCCCceEEcCC
Q 018336          235 S-EFWVVSGYKTERQGIFDESAESYQLGTGEWKRAEN  270 (358)
Q Consensus       235 ~-~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~  270 (358)
                      | +||+.....+      ...++.+|..+++.+++..
T Consensus       288 G~~I~F~Sdr~g------~~~Iy~~dl~~g~~~rlt~  318 (419)
T PRK04043        288 DKRIVFVSDRLG------YPNIFMKKLNSGSVEQVVF  318 (419)
T ss_pred             CCEEEEEECCCC------CceEEEEECCCCCeEeCcc
Confidence            4 5776654321      3478999999988876653

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=92.63  E-value=4.2  Score=34.83  Aligned_cols=143  Identities=10%  Similarity=0.007  Sum_probs=83.7

Q ss_pred             CCEEEEEcCcCCCCCCCCeEEEEECC-----CCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336          186 NGRVIIAGGHDENKTALSSAWAYDLI-----KDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQL  260 (358)
Q Consensus       186 ~~~iyv~GG~~~~~~~~~~~~~yd~~-----t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~  260 (358)
                      ++++|++.+....     .++.|...     .+.....-.+|.+-.+.+.++.||.+|.--..        ...|.+||+
T Consensus        30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~--------s~~IvkydL   96 (250)
T PF02191_consen   30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYN--------SRNIVKYDL   96 (250)
T ss_pred             CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEecC--------CceEEEEEC
Confidence            3568888775542     45555432     33334444577777788889999999988642        568899999


Q ss_pred             CCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCC-ceEEEEECCCCc---
Q 018336          261 GTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGP-QEFYVVEGRNGK---  336 (358)
Q Consensus       261 ~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~-~~i~~yd~~~~~---  336 (358)
                      .++.-..-..+|......+.....              ......-+++-++-|+||-...++.. -.|-.+|+.+-.   
T Consensus        97 ~t~~v~~~~~L~~A~~~n~~~y~~--------------~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~  162 (250)
T PF02191_consen   97 TTRSVVARRELPGAGYNNRFPYYW--------------SGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQ  162 (250)
T ss_pred             cCCcEEEEEECCccccccccceec--------------CCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEE
Confidence            998655333333222110000000              00122335667888888866554432 455567877644   


Q ss_pred             -eEeecCCCCccCceeeeeEE
Q 018336          337 -FRKFDVPAEYKGLVQSGCCV  356 (358)
Q Consensus       337 -W~~~~~p~~~~~~~~~~~~~  356 (358)
                       |.. .++....+.+|-.|.+
T Consensus       163 tw~T-~~~k~~~~naFmvCGv  182 (250)
T PF02191_consen  163 TWNT-SYPKRSAGNAFMVCGV  182 (250)
T ss_pred             EEEe-ccCchhhcceeeEeeE
Confidence             654 4666666667777743

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PRK04922 tolB translocation protein TolB; Provisional

Probab=92.59  E-value=9  Score=35.83  Aligned_cols=147  Identities=13%  Similarity=0.057  Sum_probs=76.7

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~  181 (358)
                      .++.+|..+++-..+...+...     ......- +..|++....++     ..+++++|..++..+.+..-........
T Consensus       229 ~l~~~dl~~g~~~~l~~~~g~~-----~~~~~SpDG~~l~~~~s~~g-----~~~Iy~~d~~~g~~~~lt~~~~~~~~~~  298 (433)
T PRK04922        229 AIYVQDLATGQRELVASFRGIN-----GAPSFSPDGRRLALTLSRDG-----NPEIYVMDLGSRQLTRLTNHFGIDTEPT  298 (433)
T ss_pred             EEEEEECCCCCEEEeccCCCCc-----cCceECCCCCEEEEEEeCCC-----CceEEEEECCCCCeEECccCCCCccceE
Confidence            5777888777776665543311     1112222 345654432221     2479999999988776644322111111


Q ss_pred             eEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCE-EEEEeCcccCCCCceeeeeEEEEC
Q 018336          182 AGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSE-FWVVSGYKTERQGIFDESAESYQL  260 (358)
Q Consensus       182 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~-lyv~gG~~~~~~~~~~~~i~~yd~  260 (358)
                      ...-+..|++......    ...++.+|..++..+.+..-. .........-+|+ |++..+..    +  ...++.+|+
T Consensus       299 ~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~~~~~----~--~~~I~v~d~  367 (433)
T PRK04922        299 WAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG-NYNARASVSPDGKKIAMVHGSG----G--QYRIAVMDL  367 (433)
T ss_pred             ECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC-CCccCEEECCCCCEEEEEECCC----C--ceeEEEEEC
Confidence            1112334555432221    246889999888887765221 1111112233454 55544321    1  237889999


Q ss_pred             CCCceEEcCC
Q 018336          261 GTGEWKRAEN  270 (358)
Q Consensus       261 ~~~~W~~~~~  270 (358)
                      .+++...+..
T Consensus       368 ~~g~~~~Lt~  377 (433)
T PRK04922        368 STGSVRTLTP  377 (433)
T ss_pred             CCCCeEECCC
Confidence            9888876653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=92.42  E-value=9.5  Score=35.70  Aligned_cols=147  Identities=10%  Similarity=0.021  Sum_probs=75.9

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECC-EEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQG-KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      ..++.+|..++....+...+...     .....+-++ .|++....++     ..++|++|..+...+.+...+......
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g~~-----~~~~~SPDG~~la~~~~~~g-----~~~Iy~~d~~~~~~~~Lt~~~~~~~~~  295 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPGMT-----FAPRFSPDGRKVVMSLSQGG-----NTDIYTMDLRSGTTTRLTDSPAIDTSP  295 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCCcc-----cCcEECCCCCEEEEEEecCC-----CceEEEEECCCCceEEccCCCCccCce
Confidence            36788888888777766544321     111222233 4544433221     357999999998877775433221111


Q ss_pred             eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCE-EEEEeCcccCCCCceeeeeEEEE
Q 018336          181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSE-FWVVSGYKTERQGIFDESAESYQ  259 (358)
Q Consensus       181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~-lyv~gG~~~~~~~~~~~~i~~yd  259 (358)
                      ....-+..|++......    ...++++|..++..+.+...... .......-+|+ |++.. ....     ...+..+|
T Consensus       296 ~~spDG~~i~f~s~~~g----~~~Iy~~d~~g~~~~~lt~~~~~-~~~~~~SpdG~~ia~~~-~~~~-----~~~i~~~d  364 (435)
T PRK05137        296 SYSPDGSQIVFESDRSG----SPQLYVMNADGSNPRRISFGGGR-YSTPVWSPRGDLIAFTK-QGGG-----QFSIGVMK  364 (435)
T ss_pred             eEcCCCCEEEEEECCCC----CCeEEEEECCCCCeEEeecCCCc-ccCeEECCCCCEEEEEE-cCCC-----ceEEEEEE
Confidence            11112344554432111    25789999888777766532211 11112233555 44433 2111     23678889


Q ss_pred             CCCCceEEcC
Q 018336          260 LGTGEWKRAE  269 (358)
Q Consensus       260 ~~~~~W~~~~  269 (358)
                      +.++....+.
T Consensus       365 ~~~~~~~~lt  374 (435)
T PRK05137        365 PDGSGERILT  374 (435)
T ss_pred             CCCCceEecc
Confidence            8776655544

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=92.33  E-value=11  Score=36.04  Aligned_cols=106  Identities=19%  Similarity=0.150  Sum_probs=54.6

Q ss_pred             eEEEEeCCCCC--eeecCCCCCCCCCCC-ceeEEEEEC-CEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCC
Q 018336          103 GVTVFDPVSLT--WDRLGPVPEYPAGLP-LFCQVASSQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDN  176 (358)
Q Consensus       103 ~~~~~d~~~~~--W~~~~~~~~~~~~~~-~~~~~~~~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~  176 (358)
                      .+.++|..+++  |+.-...+....... ....++..+ +.||+...        ...++.+|..|.+  |+.-......
T Consensus        72 ~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~--------~g~v~AlD~~TG~~~W~~~~~~~~~  143 (488)
T cd00216          72 ALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF--------DGRLVALDAETGKQVWKFGNNDQVP  143 (488)
T ss_pred             cEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC--------CCeEEEEECCCCCEeeeecCCCCcC
Confidence            68899988765  875433221000000 111234445 78887543        2478999988764  7654322110


Q ss_pred             c---eeeeeEEECCEEEEEcCcCCCC---CCCCeEEEEECCCC--ceEe
Q 018336          177 R---SFFAAGELNGRVIIAGGHDENK---TALSSAWAYDLIKD--EWTE  217 (358)
Q Consensus       177 ~---~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~t~--~W~~  217 (358)
                      .   ...+.++.++.+|+ |......   .....++++|.+|+  .|+.
T Consensus       144 ~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~  191 (488)
T cd00216         144 PGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF  191 (488)
T ss_pred             cceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence            1   11223445666554 4322110   12357899999876  4875

The alignment model contains an 8-bladed beta-propeller.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=92.31  E-value=6.9  Score=33.84  Aligned_cols=100  Identities=14%  Similarity=0.067  Sum_probs=51.0

Q ss_pred             EEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCC-CCCceeeeeEE-EC-CEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNM-PDNRSFFAAGE-LN-GRVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       139 ~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~~~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      .+|+.++.+       ..+.+||+.+++-...-.. ..++   .++. -+ ..+|+.++.+      ..+.+||..+++.
T Consensus         2 ~~~~s~~~d-------~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~~------~~v~~~d~~~~~~   65 (300)
T TIGR03866         2 KAYVSNEKD-------NTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASDS------DTIQVIDLATGEV   65 (300)
T ss_pred             cEEEEecCC-------CEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECCC------CeEEEEECCCCcE
Confidence            466666532       3788899887764332111 1111   2222 23 4567776432      4588999988766


Q ss_pred             EecCCCccCcCceeEE-EECCE-EEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          216 TELARMTQERDECEAV-VIGSE-FWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       216 ~~~~~~p~~~~~~~~~-~~~~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      ...-.....  ....+ .-+++ +|+.++.        ...+..||+.+.+
T Consensus        66 ~~~~~~~~~--~~~~~~~~~g~~l~~~~~~--------~~~l~~~d~~~~~  106 (300)
T TIGR03866        66 IGTLPSGPD--PELFALHPNGKILYIANED--------DNLVTVIDIETRK  106 (300)
T ss_pred             EEeccCCCC--ccEEEECCCCCEEEEEcCC--------CCeEEEEECCCCe
Confidence            432111111  11222 22344 6665432        2357888987753

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=92.20  E-value=10  Score=35.44  Aligned_cols=104  Identities=12%  Similarity=0.080  Sum_probs=58.2

Q ss_pred             ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336          155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG  234 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~  234 (358)
                      ..++++|..+++-+.+...+..-.......-+..|++....++    ...++++|..++..+.+...+..-. .....-+
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~~~-~~~~spD  297 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAIDT-EPFWGKD  297 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCCcC-CeEECCC
Confidence            4799999999888777654422111111112345554432111    2579999999998887764332111 1122335


Q ss_pred             CE-EEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336          235 SE-FWVVSGYKTERQGIFDESAESYQLGTGEWKRAE  269 (358)
Q Consensus       235 ~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~  269 (358)
                      |+ |++.....+      ...++.+|..+++++.+.
T Consensus       298 g~~i~f~s~~~g------~~~iy~~d~~~g~~~~lt  327 (430)
T PRK00178        298 GRTLYFTSDRGG------KPQIYKVNVNGGRAERVT  327 (430)
T ss_pred             CCEEEEEECCCC------CceEEEEECCCCCEEEee
Confidence            54 555432211      236888999888887764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=92.18  E-value=12  Score=36.15  Aligned_cols=106  Identities=19%  Similarity=0.187  Sum_probs=57.8

Q ss_pred             eEEEEeCCCCC--eeecCCCCCCCCC----CCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeC-CCC
Q 018336          103 GVTVFDPVSLT--WDRLGPVPEYPAG----LPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRG-KNM  173 (358)
Q Consensus       103 ~~~~~d~~~~~--W~~~~~~~~~~~~----~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~-~~~  173 (358)
                      .+.++|..+++  |+.-...+.....    ......++..+++||+...        ...++.+|..|.+  |+.- ...
T Consensus        80 ~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--------dg~l~ALDa~TGk~~W~~~~~~~  151 (527)
T TIGR03075        80 RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--------DARLVALDAKTGKVVWSKKNGDY  151 (527)
T ss_pred             cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC--------CCEEEEEECCCCCEEeecccccc
Confidence            68899988764  7654433211100    0011234556788887543        2379999998875  6542 222


Q ss_pred             CCC-ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc--eEe
Q 018336          174 PDN-RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE--WTE  217 (358)
Q Consensus       174 ~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~  217 (358)
                      ... ....+.++.++.+|+-....+. .....+..||.+|++  |+.
T Consensus       152 ~~~~~~tssP~v~~g~Vivg~~~~~~-~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       152 KAGYTITAAPLVVKGKVITGISGGEF-GVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             cccccccCCcEEECCEEEEeeccccc-CCCcEEEEEECCCCceeEec
Confidence            111 1112334568877765322111 123579999998874  774

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=92.03  E-value=7.4  Score=33.62  Aligned_cols=133  Identities=18%  Similarity=0.073  Sum_probs=64.1

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~  181 (358)
                      .+..||+.+++-...-.....    ........-+..+|+.++.       .+.+.+||..+.+... ++....+   ..
T Consensus        12 ~v~~~d~~t~~~~~~~~~~~~----~~~l~~~~dg~~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~---~~   77 (300)
T TIGR03866        12 TISVIDTATLEVTRTFPVGQR----PRGITLSKDGKLLYVCASD-------SDTIQVIDLATGEVIGTLPSGPDP---EL   77 (300)
T ss_pred             EEEEEECCCCceEEEEECCCC----CCceEECCCCCEEEEEECC-------CCeEEEEECCCCcEEEeccCCCCc---cE
Confidence            678889887764332221111    1111111123457777652       3468999998877644 3221111   12


Q ss_pred             eEE-E-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE-EECCEEEEEeCcccCCCCceeeeeEEE
Q 018336          182 AGE-L-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV-VIGSEFWVVSGYKTERQGIFDESAESY  258 (358)
Q Consensus       182 ~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~y  258 (358)
                      .+. - ++.+|+.++.+      ..+.+||+.+.+-  +..++.......++ .-++++++++...       ...+..|
T Consensus        78 ~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~-------~~~~~~~  142 (300)
T TIGR03866        78 FALHPNGKILYIANEDD------NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSET-------TNMAHFI  142 (300)
T ss_pred             EEECCCCCEEEEEcCCC------CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecC-------CCeEEEE
Confidence            222 2 34566664322      3689999987542  12122111112222 3466776666432       1134557


Q ss_pred             ECCCCc
Q 018336          259 QLGTGE  264 (358)
Q Consensus       259 d~~~~~  264 (358)
                      |..+.+
T Consensus       143 d~~~~~  148 (300)
T TIGR03866       143 DTKTYE  148 (300)
T ss_pred             eCCCCe
Confidence            776553

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>smart00284 OLF Olfactomedin-like domains

Probab=91.87  E-value=7.4  Score=33.27  Aligned_cols=76  Identities=11%  Similarity=0.043  Sum_probs=47.6

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEEC----CCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDF----TTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIK  212 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~----~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t  212 (358)
                      ++++|++.+...    ..+.++.|..    ...++.+.-.+|.+..+.+.++++|.+|.--.      ....+..||+.+
T Consensus        34 ~~~~wv~~~~~~----~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~------~s~~iiKydL~t  103 (255)
T smart00284       34 KSLYWYMPLNTR----VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF------NSHDICRFDLTT  103 (255)
T ss_pred             CceEEEEccccC----CCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec------CCccEEEEECCC
Confidence            466888765421    1345666643    23333333356777778888899999998632      236799999999


Q ss_pred             CceEecCCCc
Q 018336          213 DEWTELARMT  222 (358)
Q Consensus       213 ~~W~~~~~~p  222 (358)
                      ++-.....+|
T Consensus       104 ~~v~~~~~Lp  113 (255)
T smart00284      104 ETYQKEPLLN  113 (255)
T ss_pred             CcEEEEEecC
Confidence            8764333333

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=91.69  E-value=5.2  Score=36.39  Aligned_cols=124  Identities=12%  Similarity=0.225  Sum_probs=68.6

Q ss_pred             eeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE-CCEEEEEeCcccCCCCceeeeeE
Q 018336          179 FFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI-GSEFWVVSGYKTERQGIFDESAE  256 (358)
Q Consensus       179 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~~~i~  256 (358)
                      ..+++.. +|.|+..|-.+      ..+.+||+.+..  .+..+|..-.....+.+ +|-.|+.-+.+       -.++.
T Consensus       350 ~ts~~fHpDgLifgtgt~d------~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad-------d~~V~  414 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPD------GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD-------DGSVK  414 (506)
T ss_pred             eEEeeEcCCceEEeccCCC------ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec-------CCeEE
Confidence            3444443 67777776433      458999998876  66667764333334433 33344444332       22478


Q ss_pred             EEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          257 SYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       257 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                      .||.....  .+...+...  ......                     -.+-..|+.++++|.+    -.||.|+-.+..
T Consensus       415 lwDLRKl~--n~kt~~l~~--~~~v~s---------------------~~fD~SGt~L~~~g~~----l~Vy~~~k~~k~  465 (506)
T KOG0289|consen  415 LWDLRKLK--NFKTIQLDE--KKEVNS---------------------LSFDQSGTYLGIAGSD----LQVYICKKKTKS  465 (506)
T ss_pred             EEEehhhc--ccceeeccc--ccccee---------------------EEEcCCCCeEEeecce----eEEEEEeccccc
Confidence            88887543  222211111  000111                     1233457888888753    456777888999


Q ss_pred             eEee-cCCCCc
Q 018336          337 FRKF-DVPAEY  346 (358)
Q Consensus       337 W~~~-~~p~~~  346 (358)
                      |+++ .++...
T Consensus       466 W~~~~~~~~~s  476 (506)
T KOG0289|consen  466 WTEIKELADHS  476 (506)
T ss_pred             ceeeehhhhcc
Confidence            9999 655443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=91.43  E-value=12  Score=34.92  Aligned_cols=148  Identities=11%  Similarity=0.068  Sum_probs=76.2

Q ss_pred             ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336          155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG  234 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~  234 (358)
                      ..++++|..+++-+.+...+..-.......-+..|++......    ...++.+|..++..+.+..-.... ......-+
T Consensus       223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~~-~~~~wSPD  297 (429)
T PRK03629        223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSNN-TEPTWFPD  297 (429)
T ss_pred             cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCCc-CceEECCC
Confidence            4799999988877776654432221111112345665532221    246999999998887765432211 11122335


Q ss_pred             CEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEE
Q 018336          235 SEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTL  314 (358)
Q Consensus       235 ~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~  314 (358)
                      |+.+++.....   +  ...++.+|+.++.-..+.....    ...                       .....-+|+.+
T Consensus       298 G~~I~f~s~~~---g--~~~Iy~~d~~~g~~~~lt~~~~----~~~-----------------------~~~~SpDG~~I  345 (429)
T PRK03629        298 SQNLAYTSDQA---G--RPQVYKVNINGGAPQRITWEGS----QNQ-----------------------DADVSSDGKFM  345 (429)
T ss_pred             CCEEEEEeCCC---C--CceEEEEECCCCCeEEeecCCC----Ccc-----------------------CEEECCCCCEE
Confidence            55333332111   1  2367888888876665532210    000                       01122344433


Q ss_pred             EECCCCCCCCceEEEEECCCCceEee
Q 018336          315 VTGSGYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       315 v~gG~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                      ++.+...+ ...++++|+++++++.+
T Consensus       346 a~~~~~~g-~~~I~~~dl~~g~~~~L  370 (429)
T PRK03629        346 VMVSSNGG-QQHIAKQDLATGGVQVL  370 (429)
T ss_pred             EEEEccCC-CceEEEEECCCCCeEEe
Confidence            33332211 25788899988888876

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=91.33  E-value=2.3  Score=33.77  Aligned_cols=85  Identities=14%  Similarity=0.148  Sum_probs=51.3

Q ss_pred             EEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEE-EEe
Q 018336          231 VVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCR-VEL  309 (358)
Q Consensus       231 ~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~-~~~  309 (358)
                      +.+||.+|-++.......   ...|.+||+.+++++..-.+|.........                      ..+ ++.
T Consensus         2 V~vnG~~hW~~~~~~~~~---~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~----------------------~~L~~v~   56 (164)
T PF07734_consen    2 VFVNGALHWLAYDENNDE---KDFILSFDLSTEKFGRSLPLPFCNDDDDDS----------------------VSLSVVR   56 (164)
T ss_pred             EEECCEEEeeEEecCCCC---ceEEEEEeccccccCCEECCCCccCccCCE----------------------EEEEEec
Confidence            678999999986543321   226999999999994444444332101111                      122 344


Q ss_pred             CCeEEEECCCCCCCCceEEEEEC---CCCceEee
Q 018336          310 GGCTLVTGSGYQGGPQEFYVVEG---RNGKFRKF  340 (358)
Q Consensus       310 ~~~i~v~gG~~~~~~~~i~~yd~---~~~~W~~~  340 (358)
                      +++|.++--......-+||+.+-   ....|+++
T Consensus        57 ~~~L~~~~~~~~~~~~~IWvm~~~~~~~~SWtK~   90 (164)
T PF07734_consen   57 GDCLCVLYQCDETSKIEIWVMKKYGYGKESWTKL   90 (164)
T ss_pred             CCEEEEEEeccCCccEEEEEEeeeccCcceEEEE
Confidence            77888884332222268888762   36779999

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=91.06  E-value=11  Score=33.90  Aligned_cols=116  Identities=12%  Similarity=0.099  Sum_probs=60.5

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECC--CCcEEeC---CCCCCCc----eeeeeEEE--CCEEEEEcCcCCCCCCCCeE
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFT--TRRWTRG---KNMPDNR----SFFAAGEL--NGRVIIAGGHDENKTALSSA  205 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~--t~~W~~~---~~~~~~~----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~  205 (358)
                      +..+|+....       .+.+.+|+..  +.+++.+   +.+|...    .....+..  +..+|+.-.      ..+.+
T Consensus       203 g~~~Yv~~e~-------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr------~~~sI  269 (345)
T PF10282_consen  203 GKYAYVVNEL-------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR------GSNSI  269 (345)
T ss_dssp             SSEEEEEETT-------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC------TTTEE
T ss_pred             cCEEEEecCC-------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec------cCCEE
Confidence            4678998764       3456666555  6666553   3343221    12222222  456787632      24567


Q ss_pred             EEEEC--CCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCC
Q 018336          206 WAYDL--IKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAEN  270 (358)
Q Consensus       206 ~~yd~--~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~  270 (358)
                      .+|++  .+++.+.+...+..-.....+.+  +|+..+++.....     .-.++..|.+++.+..+..
T Consensus       270 ~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~-----~v~vf~~d~~tG~l~~~~~  333 (345)
T PF10282_consen  270 SVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN-----TVSVFDIDPDTGKLTPVGS  333 (345)
T ss_dssp             EEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT-----EEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC-----eEEEEEEeCCCCcEEEecc
Confidence            78876  55677766655442222233333  5664444433211     1233444677888887764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=90.94  E-value=15  Score=35.03  Aligned_cols=122  Identities=13%  Similarity=0.104  Sum_probs=65.8

Q ss_pred             EEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCC----CCc-eeeeeEEEC-CEEEEEcCcCCCCCCCC
Q 018336          132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMP----DNR-SFFAAGELN-GRVIIAGGHDENKTALS  203 (358)
Q Consensus       132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~----~~~-~~~~~~~~~-~~iyv~GG~~~~~~~~~  203 (358)
                      ..+..++.||+...        ...++.+|..|.+  |+.-...+    .+. .....+..+ +.+|+...       ..
T Consensus        56 sPvv~~g~vy~~~~--------~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g  120 (488)
T cd00216          56 TPLVVDGDMYFTTS--------HSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DG  120 (488)
T ss_pred             CCEEECCEEEEeCC--------CCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CC
Confidence            34566889998754        2368888988654  87633222    111 111234446 78887532       24


Q ss_pred             eEEEEECCCC--ceEecCCCcc-C--cCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc--eEEc
Q 018336          204 SAWAYDLIKD--EWTELARMTQ-E--RDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE--WKRA  268 (358)
Q Consensus       204 ~~~~yd~~t~--~W~~~~~~p~-~--~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~~  268 (358)
                      .++++|.+|+  .|+.-...+. .  ....+.++.++.+|+-..............++++|..+++  |+.-
T Consensus       121 ~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~  192 (488)
T cd00216         121 RLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY  192 (488)
T ss_pred             eEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence            6999999865  4886432221 0  0122345666666653211100000123578999998774  8753

The alignment model contains an 8-bladed beta-propeller.

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=90.84  E-value=8.7  Score=32.16  Aligned_cols=203  Identities=13%  Similarity=0.109  Sum_probs=107.3

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAA  182 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~  182 (358)
                      .+..+||..+.-.+.-.-...    ..--+..+.++.-++.||-       -..+.+||..|.+--+-  +......-.+
T Consensus        40 tvrLWNp~rg~liktYsghG~----EVlD~~~s~Dnskf~s~Gg-------Dk~v~vwDV~TGkv~Rr--~rgH~aqVNt  106 (307)
T KOG0316|consen   40 TVRLWNPLRGALIKTYSGHGH----EVLDAALSSDNSKFASCGG-------DKAVQVWDVNTGKVDRR--FRGHLAQVNT  106 (307)
T ss_pred             eEEeecccccceeeeecCCCc----eeeeccccccccccccCCC-------CceEEEEEcccCeeeee--cccccceeeE
Confidence            566677777654333221110    1111223334433444432       35799999999764221  1111111222


Q ss_pred             EEEC--CEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336          183 GELN--GRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQL  260 (358)
Q Consensus       183 ~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~  260 (358)
                      +.++  ..+.+-|+.+      ..+.++|-.+++.+.+.-+...+.+...+.+.+...+.|..++        .+..||+
T Consensus       107 V~fNeesSVv~SgsfD------~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG--------tvRtydi  172 (307)
T KOG0316|consen  107 VRFNEESSVVASGSFD------SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG--------TVRTYDI  172 (307)
T ss_pred             EEecCcceEEEecccc------ceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC--------cEEEEEe
Confidence            3343  3455555544      4599999999999988888888888888899999888876532        3567887


Q ss_pred             CCCceEE--cCCcccc--CCCCCceeee---------eecCccCce-eccccc--eeeceEEEEeCCeEEEECCCCCCCC
Q 018336          261 GTGEWKR--AENAWKL--SQCPRSNVGV---------GREGKLFCW-AETEAA--VQFGTCRVELGGCTLVTGSGYQGGP  324 (358)
Q Consensus       261 ~~~~W~~--~~~~p~~--~~~~~~~~~~---------~~d~~~~~W-~~lp~~--~r~~~~~~~~~~~i~v~gG~~~~~~  324 (358)
                      ..++-..  +.. |..  ....-+.+.+         .+|.++.+- +...-.  .-+-.-++..+..-.|++|..++  
T Consensus       173 R~G~l~sDy~g~-pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG--  249 (307)
T KOG0316|consen  173 RKGTLSSDYFGH-PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG--  249 (307)
T ss_pred             ecceeehhhcCC-cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc--
Confidence            6654321  111 000  0000111111         445554443 111100  11333455566667788887654  


Q ss_pred             ceEEEEECCCCc
Q 018336          325 QEFYVVEGRNGK  336 (358)
Q Consensus       325 ~~i~~yd~~~~~  336 (358)
                       -++.||....+
T Consensus       250 -~Vy~wdLvd~~  260 (307)
T KOG0316|consen  250 -KVYFWDLVDET  260 (307)
T ss_pred             -eEEEEEeccce
Confidence             68888877554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=90.58  E-value=6  Score=35.23  Aligned_cols=63  Identities=17%  Similarity=0.141  Sum_probs=35.7

Q ss_pred             cceEEEEeCCCCCeeecCCCCCC-CC--CC-CceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe
Q 018336          101 SYGVTVFDPVSLTWDRLGPVPEY-PA--GL-PLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR  169 (358)
Q Consensus       101 ~~~~~~~d~~~~~W~~~~~~~~~-~~--~~-~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~  169 (358)
                      ..-+..||+.+.+-..--.+|.. |.  .. +...++..-+..+||..-      .+..++-+-|...++...
T Consensus        66 tDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~------TPa~SVtVVDl~~~kvv~  132 (342)
T PF06433_consen   66 TDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF------TPATSVTVVDLAAKKVVG  132 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE------SSSEEEEEEETTTTEEEE
T ss_pred             eeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc------CCCCeEEEEECCCCceee
Confidence            45688999999864332222321 21  11 112222223456777643      357799999999988754

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=90.45  E-value=13  Score=34.35  Aligned_cols=139  Identities=14%  Similarity=0.170  Sum_probs=72.5

Q ss_pred             ceEEEEeCCCCCeee-cCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcE-EeCCCCCCCcee
Q 018336          102 YGVTVFDPVSLTWDR-LGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRW-TRGKNMPDNRSF  179 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~~  179 (358)
                      -.+..|+..+.+-.. +..+..     ..+.+....+|.++..|+..       ..+-+||..++.- +.+..-..|...
T Consensus        48 ~rvqly~~~~~~~~k~~srFk~-----~v~s~~fR~DG~LlaaGD~s-------G~V~vfD~k~r~iLR~~~ah~apv~~  115 (487)
T KOG0310|consen   48 VRVQLYSSVTRSVRKTFSRFKD-----VVYSVDFRSDGRLLAAGDES-------GHVKVFDMKSRVILRQLYAHQAPVHV  115 (487)
T ss_pred             cEEEEEecchhhhhhhHHhhcc-----ceeEEEeecCCeEEEccCCc-------CcEEEeccccHHHHHHHhhccCceeE
Confidence            467888887765433 222222     22333344579999999853       3689999444221 111121222221


Q ss_pred             eeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceE-ecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEE
Q 018336          180 FAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWT-ELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESY  258 (358)
Q Consensus       180 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~y  258 (358)
                      --....++.+++.|+-+.      .+..+|..+..-+ .+..........+....++.|.+.||+++        .|-.|
T Consensus       116 ~~f~~~d~t~l~s~sDd~------v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg--------~vrl~  181 (487)
T KOG0310|consen  116 TKFSPQDNTMLVSGSDDK------VVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDG--------KVRLW  181 (487)
T ss_pred             EEecccCCeEEEecCCCc------eEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCc--------eEEEE
Confidence            222236788888876432      2444454444311 11111111111233467889999999853        46778


Q ss_pred             ECCCC-ceE
Q 018336          259 QLGTG-EWK  266 (358)
Q Consensus       259 d~~~~-~W~  266 (358)
                      |..+. .|.
T Consensus       182 DtR~~~~~v  190 (487)
T KOG0310|consen  182 DTRSLTSRV  190 (487)
T ss_pred             EeccCCcee
Confidence            88876 443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=90.32  E-value=15  Score=33.97  Aligned_cols=149  Identities=13%  Similarity=0.048  Sum_probs=78.9

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEEC-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      ..++.+|..+++-..+.......     ......-+ ..|++.....+     ...++++|..++..+.+..........
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~~~-----~~~~~spDg~~l~~~~~~~~-----~~~i~~~d~~~~~~~~l~~~~~~~~~~  283 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPGMN-----GAPAFSPDGSKLAVSLSKDG-----NPDIYVMDLDGKQLTRLTNGPGIDTEP  283 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCCCc-----cceEECCCCCEEEEEECCCC-----CccEEEEECCCCCEEECCCCCCCCCCE
Confidence            35778888877666554433211     11122223 34655433221     347999999998877775433221111


Q ss_pred             eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336          181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQL  260 (358)
Q Consensus       181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~  260 (358)
                      ....-+..|++......    ...++.+|..++.++.+....... ......-+|+.+++......     ...++.+|+
T Consensus       284 ~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~~~~-~~~~~spdg~~i~~~~~~~~-----~~~i~~~d~  353 (417)
T TIGR02800       284 SWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRGGYN-ASPSWSPDGDLIAFVHREGG-----GFNIAVMDL  353 (417)
T ss_pred             EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCCCc-cCeEECCCCCEEEEEEccCC-----ceEEEEEeC
Confidence            11112344555432221    247899999888887665321111 11122345665555543221     346889999


Q ss_pred             CCCceEEcCC
Q 018336          261 GTGEWKRAEN  270 (358)
Q Consensus       261 ~~~~W~~~~~  270 (358)
                      .++.++.+..
T Consensus       354 ~~~~~~~l~~  363 (417)
T TIGR02800       354 DGGGERVLTD  363 (417)
T ss_pred             CCCCeEEccC
Confidence            9877776654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=89.22  E-value=27  Score=35.34  Aligned_cols=121  Identities=13%  Similarity=0.201  Sum_probs=62.2

Q ss_pred             EEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCCc-----eeeee------------------EEEC
Q 018336          132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDNR-----SFFAA------------------GELN  186 (358)
Q Consensus       132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~-----~~~~~------------------~~~~  186 (358)
                      .-+.+++.||+...        .+.++.+|..|.+  |+.-+..+..-     .+-+.                  +..+
T Consensus       189 TPlvvgg~lYv~t~--------~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~  260 (764)
T TIGR03074       189 TPLKVGDTLYLCTP--------HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCA  260 (764)
T ss_pred             CCEEECCEEEEECC--------CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccC
Confidence            44567999999865        3467777777654  76544332110     00011                  1234


Q ss_pred             CEEEEEcCcCCCCCCCCeEEEEECCCCc--eEe-----------cCCCccCc--CceeEEEECCEEEEEeCcccC--CCC
Q 018336          187 GRVIIAGGHDENKTALSSAWAYDLIKDE--WTE-----------LARMTQER--DECEAVVIGSEFWVVSGYKTE--RQG  249 (358)
Q Consensus       187 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~-----------~~~~p~~~--~~~~~~~~~~~lyv~gG~~~~--~~~  249 (358)
                      ++||+. ..+      ..++.+|.+|++  |..           +.+.+...  ....-++.++.+|+ |+....  ...
T Consensus       261 ~rV~~~-T~D------g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~  332 (764)
T TIGR03074       261 RRIILP-TSD------ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTD  332 (764)
T ss_pred             CEEEEe-cCC------CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-Eeccccccccc
Confidence            456553 211      347777777654  532           11222111  12233577887777 432111  111


Q ss_pred             ceeeeeEEEECCCCc--eEEc
Q 018336          250 IFDESAESYQLGTGE--WKRA  268 (358)
Q Consensus       250 ~~~~~i~~yd~~~~~--W~~~  268 (358)
                      .....|..||.++++  |+.-
T Consensus       333 ~~~G~I~A~Da~TGkl~W~~~  353 (764)
T TIGR03074       333 EPSGVIRAFDVNTGALVWAWD  353 (764)
T ss_pred             CCCcEEEEEECCCCcEeeEEe
Confidence            224578999999885  7654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=88.20  E-value=38  Score=35.82  Aligned_cols=161  Identities=12%  Similarity=0.045  Sum_probs=84.7

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCC----------CC--Ccee-eeeEEE--CCEEEEEcCcCCCCCC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNM----------PD--NRSF-FAAGEL--NGRVIIAGGHDENKTA  201 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~----------~~--~~~~-~~~~~~--~~~iyv~GG~~~~~~~  201 (358)
                      ++.+|+....       .+.+++||+.++....+..-          ..  .... .+.+..  ++.||+....      
T Consensus       694 ~g~LyVad~~-------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------  760 (1057)
T PLN02919        694 NEKVYIAMAG-------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------  760 (1057)
T ss_pred             CCeEEEEECC-------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------
Confidence            6789988542       35799999987765433210          00  0011 122222  3469988532      


Q ss_pred             CCeEEEEECCCCceEecC---C-Ccc--------------C-cCc-eeEE-EECCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336          202 LSSAWAYDLIKDEWTELA---R-MTQ--------------E-RDE-CEAV-VIGSEFWVVSGYKTERQGIFDESAESYQL  260 (358)
Q Consensus       202 ~~~~~~yd~~t~~W~~~~---~-~p~--------------~-~~~-~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~yd~  260 (358)
                      .+.+.+||+.++.-..+.   + .+.              . ... .+++ .-+|.+||....        ...|.+||+
T Consensus       761 n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~--------N~rIrviD~  832 (1057)
T PLN02919        761 SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY--------NHKIKKLDP  832 (1057)
T ss_pred             CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC--------CCEEEEEEC
Confidence            257999999876533211   0 000              0 001 1222 345779988643        457899999


Q ss_pred             CCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceE-EEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          261 GTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTC-RVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       261 ~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~-~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                      .++....+......+ .. .            ...++........ ++.-+|+|||.-..+    +.|.++|..+++
T Consensus       833 ~tg~v~tiaG~G~~G-~~-d------------G~~~~a~l~~P~GIavd~dG~lyVaDt~N----n~Irvid~~~~~  891 (1057)
T PLN02919        833 ATKRVTTLAGTGKAG-FK-D------------GKALKAQLSEPAGLALGENGRLFVADTNN----SLIRYLDLNKGE  891 (1057)
T ss_pred             CCCeEEEEeccCCcC-CC-C------------CcccccccCCceEEEEeCCCCEEEEECCC----CEEEEEECCCCc
Confidence            988777655321100 00 0            0000000111122 233478899986554    689999998876

>PRK13684 Ycf48-like protein; Provisional

Probab=88.11  E-value=19  Score=32.33  Aligned_cols=90  Identities=10%  Similarity=0.147  Sum_probs=45.6

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEE-EECCCCce
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWA-YDLIKDEW  215 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-yd~~t~~W  215 (358)
                      ++.+++.|.        ...+++-+-.-.+|+.+...... .-+.+....+..|++.|...      .++. .+....+|
T Consensus       142 ~~~~~~~g~--------~G~i~~S~DgG~tW~~~~~~~~g-~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW  206 (334)
T PRK13684        142 PGTAEMATN--------VGAIYRTTDGGKNWEALVEDAAG-VVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAW  206 (334)
T ss_pred             CCcceeeec--------cceEEEECCCCCCceeCcCCCcc-eEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeE
Confidence            344666654        22466656566799987643322 22333333333344433221      2332 24455679


Q ss_pred             EecCCCccCcCceeEE-EECCEEEEEeC
Q 018336          216 TELARMTQERDECEAV-VIGSEFWVVSG  242 (358)
Q Consensus       216 ~~~~~~p~~~~~~~~~-~~~~~lyv~gG  242 (358)
                      +.+.. +....-..++ .-+++++++|.
T Consensus       207 ~~~~~-~~~~~l~~i~~~~~g~~~~vg~  233 (334)
T PRK13684        207 TPHQR-NSSRRLQSMGFQPDGNLWMLAR  233 (334)
T ss_pred             EEeeC-CCcccceeeeEcCCCCEEEEec
Confidence            98754 3333333433 34677888863

>PRK02889 tolB translocation protein TolB; Provisional

Probab=88.11  E-value=23  Score=33.12  Aligned_cols=104  Identities=15%  Similarity=0.066  Sum_probs=53.9

Q ss_pred             ceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336          155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG  234 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~  234 (358)
                      ..++++|..+.+=+.+...+..........-+..|++....+.    ...++.+|..++..+.+..-.. ........-|
T Consensus       220 ~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSpD  294 (427)
T PRK02889        220 PVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQSSG-IDTEPFFSPD  294 (427)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCCCC-CCcCeEEcCC
Confidence            4699999988876666544322111111112345555433222    3578999998877666643221 1111223445


Q ss_pred             CE-EEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336          235 SE-FWVVSGYKTERQGIFDESAESYQLGTGEWKRAE  269 (358)
Q Consensus       235 ~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~  269 (358)
                      |+ |++.....  .    ...++.+|..++..+.+.
T Consensus       295 G~~l~f~s~~~--g----~~~Iy~~~~~~g~~~~lt  324 (427)
T PRK02889        295 GRSIYFTSDRG--G----APQIYRMPASGGAAQRVT  324 (427)
T ss_pred             CCEEEEEecCC--C----CcEEEEEECCCCceEEEe
Confidence            65 44433211  1    235777887777666554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=87.53  E-value=24  Score=32.85  Aligned_cols=153  Identities=12%  Similarity=0.082  Sum_probs=86.9

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEEC-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      ..++.+|..+++=+.+...+..     ......+-+ .+|.+.....+     ..++|++|..++.++.+...+..-...
T Consensus       213 ~~Iyv~dl~tg~~~~lt~~~g~-----~~~~~~SPDG~~la~~~~~~g-----~~~Iy~~dl~~g~~~~LT~~~~~d~~p  282 (419)
T PRK04043        213 PTLYKYNLYTGKKEKIASSQGM-----LVVSDVSKDGSKLLLTMAPKG-----QPDIYLYDTNTKTLTQITNYPGIDVNG  282 (419)
T ss_pred             CEEEEEECCCCcEEEEecCCCc-----EEeeEECCCCCEEEEEEccCC-----CcEEEEEECCCCcEEEcccCCCccCcc
Confidence            3788999988877777653331     111122223 35554433221     358999999999998886554311112


Q ss_pred             eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCC-CCceeeeeEEEE
Q 018336          181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTER-QGIFDESAESYQ  259 (358)
Q Consensus       181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~-~~~~~~~i~~yd  259 (358)
                      ....-+..||+.....+    ...++++|..++..+++.....  .. ....-+|+..++....... .+.....++.+|
T Consensus       283 ~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~--~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d  355 (419)
T PRK04043        283 NFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK--NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLIS  355 (419)
T ss_pred             EECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC--cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEE
Confidence            22223456777653321    3579999999998877653211  12 2344466643443322111 001135789999


Q ss_pred             CCCCceEEcCCc
Q 018336          260 LGTGEWKRAENA  271 (358)
Q Consensus       260 ~~~~~W~~~~~~  271 (358)
                      +.++.++.+..-
T Consensus       356 ~~~g~~~~LT~~  367 (419)
T PRK04043        356 TNSDYIRRLTAN  367 (419)
T ss_pred             CCCCCeEECCCC
Confidence            999998887653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=87.45  E-value=25  Score=32.87  Aligned_cols=148  Identities=9%  Similarity=0.041  Sum_probs=74.2

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEEC-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~  181 (358)
                      .++.+|..+++-..+...+...     ......-+ ..|++.....+     ..+++++|..+++.+.+...........
T Consensus       224 ~i~i~dl~~G~~~~l~~~~~~~-----~~~~~SPDG~~La~~~~~~g-----~~~I~~~d~~tg~~~~lt~~~~~~~~~~  293 (429)
T PRK03629        224 ALVIQTLANGAVRQVASFPRHN-----GAPAFSPDGSKLAFALSKTG-----SLNLYVMDLASGQIRQVTDGRSNNTEPT  293 (429)
T ss_pred             EEEEEECCCCCeEEccCCCCCc-----CCeEECCCCCEEEEEEcCCC-----CcEEEEEECCCCCEEEccCCCCCcCceE
Confidence            4556666666555554433311     11122223 34555433211     2469999999988877754332211111


Q ss_pred             eEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECC
Q 018336          182 AGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLG  261 (358)
Q Consensus       182 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~  261 (358)
                      ...-+..|++......    ...++.+|+.++.-+.+...... .......-+|+.+++.+....     ...++.+|+.
T Consensus       294 wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~~~-~~~~~~SpDG~~Ia~~~~~~g-----~~~I~~~dl~  363 (429)
T PRK03629        294 WFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEGSQ-NQDADVSSDGKFMVMVSSNGG-----QQHIAKQDLA  363 (429)
T ss_pred             ECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCCCC-ccCEEECCCCCEEEEEEccCC-----CceEEEEECC
Confidence            1112334544432111    24788889988776665422111 111222345654444332211     2367889999


Q ss_pred             CCceEEcCC
Q 018336          262 TGEWKRAEN  270 (358)
Q Consensus       262 ~~~W~~~~~  270 (358)
                      +++++.+..
T Consensus       364 ~g~~~~Lt~  372 (429)
T PRK03629        364 TGGVQVLTD  372 (429)
T ss_pred             CCCeEEeCC
Confidence            998887764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=86.35  E-value=24  Score=31.48  Aligned_cols=137  Identities=15%  Similarity=0.055  Sum_probs=63.2

Q ss_pred             eEEEEeCCC-CCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECC-CCcEEeCCCCCCCce-e
Q 018336          103 GVTVFDPVS-LTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT-TRRWTRGKNMPDNRS-F  179 (358)
Q Consensus       103 ~~~~~d~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~~~-~  179 (358)
                      .+..||..+ +++..+...+....  +...+...-+..||+.+..       ...+.+|+.. +.++..+...+.+.. .
T Consensus        13 ~I~~~~~~~~g~l~~~~~~~~~~~--~~~l~~spd~~~lyv~~~~-------~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028         13 QIHVWNLNHEGALTLLQVVDVPGQ--VQPMVISPDKRHLYVGVRP-------EFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             CEEEEEECCCCceeeeeEEecCCC--CccEEECCCCCEEEEEECC-------CCcEEEEEECCCCceEEeeeecCCCCce
Confidence            567777753 46655544433211  1111122224567775441       2457777775 456665543332221 2


Q ss_pred             eeeEEECC-EEEEEcCcCCCCCCCCeEEEEECCCC-ce-EecCCCccCcCceeEE-EECCE-EEEEeCcccCCCCceeee
Q 018336          180 FAAGELNG-RVIIAGGHDENKTALSSAWAYDLIKD-EW-TELARMTQERDECEAV-VIGSE-FWVVSGYKTERQGIFDES  254 (358)
Q Consensus       180 ~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~-~W-~~~~~~p~~~~~~~~~-~~~~~-lyv~gG~~~~~~~~~~~~  254 (358)
                      +.+..-++ .+|+.. +.     .+.+.+|+..++ .- +.+...+.....+.++ .-+++ +|+.. ..       .+.
T Consensus        84 ~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~-~~-------~~~  149 (330)
T PRK11028         84 HISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC-LK-------EDR  149 (330)
T ss_pred             EEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee-CC-------CCE
Confidence            22222234 566663 22     246788887643 11 1222222211223332 22444 55544 21       356


Q ss_pred             eEEEECCC
Q 018336          255 AESYQLGT  262 (358)
Q Consensus       255 i~~yd~~~  262 (358)
                      +.+||..+
T Consensus       150 v~v~d~~~  157 (330)
T PRK11028        150 IRLFTLSD  157 (330)
T ss_pred             EEEEEECC
Confidence            88899876

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=86.13  E-value=21  Score=30.78  Aligned_cols=60  Identities=10%  Similarity=0.209  Sum_probs=40.0

Q ss_pred             CeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCc
Q 018336          203 SSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENA  271 (358)
Q Consensus       203 ~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~  271 (358)
                      ..++.||+.+..|.+.+ +|......-...+  .|++++.--        -.+.|..||+++.+++.++..
T Consensus       254 g~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~sea--------~agai~rfdpeta~ftv~p~p  315 (353)
T COG4257         254 GSLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLSEA--------DAGAIGRFDPETARFTVLPIP  315 (353)
T ss_pred             ceeeEeCcccccceeee-CCCCCCCcceeeeccCCcEEeecc--------ccCceeecCcccceEEEecCC
Confidence            47899999999999876 3332222233334  445665421        145789999999999988753

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=85.39  E-value=26  Score=31.01  Aligned_cols=202  Identities=13%  Similarity=0.139  Sum_probs=84.3

Q ss_pred             EEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCC-CCCCCceeeee
Q 018336          104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGK-NMPDNRSFFAA  182 (358)
Q Consensus       104 ~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~~~~~~~~  182 (358)
                      ++.=+-.-.+|.....-...... .+...+...++..|++|..        .-++.-.-.-.+|++++ +.+.+-..+..
T Consensus        39 il~T~DGG~tW~~~~~~~~~~~~-~~l~~I~f~~~~g~ivG~~--------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i  109 (302)
T PF14870_consen   39 ILKTTDGGKTWQPVSLDLDNPFD-YHLNSISFDGNEGWIVGEP--------GLLLHTTDGGKTWERVPLSSKLPGSPFGI  109 (302)
T ss_dssp             EEEESSTTSS-EE-----S------EEEEEEEETTEEEEEEET--------TEEEEESSTTSS-EE----TT-SS-EEEE
T ss_pred             EEEECCCCccccccccCCCccce-eeEEEEEecCCceEEEcCC--------ceEEEecCCCCCcEEeecCCCCCCCeeEE
Confidence            34344444679877532221111 2233455567888988742        23444444567899985 23334333444


Q ss_pred             EE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE-ECCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336          183 GE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV-IGSEFWVVSGYKTERQGIFDESAESYQL  260 (358)
Q Consensus       183 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~-~~~~lyv~gG~~~~~~~~~~~~i~~yd~  260 (358)
                      .. -++.+++++..       ..++.=.-.-.+|+.+..-... ....+.. -+|++++++ ..+.       .....|+
T Consensus       110 ~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~~vavs-~~G~-------~~~s~~~  173 (302)
T PF14870_consen  110 TALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETSG-SINDITRSSDGRYVAVS-SRGN-------FYSSWDP  173 (302)
T ss_dssp             EEEETTEEEEEETT---------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEE-TTSS-------EEEEE-T
T ss_pred             EEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCcEEEEE-Cccc-------EEEEecC
Confidence            33 45677776532       2355544456689986532221 1122333 355555454 2211       2345677


Q ss_pred             CCCceEEcCCccccCCCCCceeeeeec--------------------CccCceec--ccccee-ec-eEEE-EeCCeEEE
Q 018336          261 GTGEWKRAENAWKLSQCPRSNVGVGRE--------------------GKLFCWAE--TEAAVQ-FG-TCRV-ELGGCTLV  315 (358)
Q Consensus       261 ~~~~W~~~~~~p~~~~~~~~~~~~~~d--------------------~~~~~W~~--lp~~~r-~~-~~~~-~~~~~i~v  315 (358)
                      ....|+.....     ..+....+.|+                    ....+|.+  .|.... ++ ..++ .-++.+++
T Consensus       174 G~~~w~~~~r~-----~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa  248 (302)
T PF14870_consen  174 GQTTWQPHNRN-----SSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWA  248 (302)
T ss_dssp             T-SS-EEEE-------SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEE
T ss_pred             CCccceEEccC-----ccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEE
Confidence            77778877654     22333333222                    24455633  343222 22 2233 34688999


Q ss_pred             ECCCCCCCCceEEEEECCCCceEee
Q 018336          316 TGSGYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       316 ~gG~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                      .||..     .+++=.=.-++|++.
T Consensus       249 ~gg~G-----~l~~S~DgGktW~~~  268 (302)
T PF14870_consen  249 VGGSG-----TLLVSTDGGKTWQKD  268 (302)
T ss_dssp             EESTT------EEEESSTTSS-EE-
T ss_pred             EeCCc-----cEEEeCCCCccceEC
Confidence            99862     444333445669988

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=85.20  E-value=22  Score=31.82  Aligned_cols=37  Identities=16%  Similarity=-0.045  Sum_probs=25.9

Q ss_pred             cCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCC
Q 018336           73 SGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPE  122 (358)
Q Consensus        73 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~  122 (358)
                      ++..+.++|+....             +..++-+.|...++-...-+.|.
T Consensus       102 ls~dgk~~~V~N~T-------------Pa~SVtVVDl~~~kvv~ei~~PG  138 (342)
T PF06433_consen  102 LSADGKFLYVQNFT-------------PATSVTVVDLAAKKVVGEIDTPG  138 (342)
T ss_dssp             E-TTSSEEEEEEES-------------SSEEEEEEETTTTEEEEEEEGTS
T ss_pred             EccCCcEEEEEccC-------------CCCeEEEEECCCCceeeeecCCC
Confidence            34467788887765             45689999999998765544443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=84.45  E-value=25  Score=32.71  Aligned_cols=103  Identities=14%  Similarity=0.278  Sum_probs=64.7

Q ss_pred             CCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCce
Q 018336          202 LSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSN  281 (358)
Q Consensus       202 ~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~  281 (358)
                      ...+|+=.....+++++-+|+....  .-+.+++++|.+.-..+.+      .++.-|++.+--.+..++..-  .+|  
T Consensus       205 rGklWis~d~g~tFeK~vdl~~~vS--~PmIV~~RvYFlsD~eG~G------nlYSvdldGkDlrrHTnFtdY--Y~R--  272 (668)
T COG4946         205 RGKLWISSDGGKTFEKFVDLDGNVS--SPMIVGERVYFLSDHEGVG------NLYSVDLDGKDLRRHTNFTDY--YPR--  272 (668)
T ss_pred             cceEEEEecCCcceeeeeecCCCcC--CceEEcceEEEEecccCcc------ceEEeccCCchhhhcCCchhc--ccc--
Confidence            4566765555567888777776544  3467899999997655433      456666665544444443221  111  


Q ss_pred             eeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee--cCCCC
Q 018336          282 VGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF--DVPAE  345 (358)
Q Consensus       282 ~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~--~~p~~  345 (358)
                                              -+..+|+-.||.--     .+||.|||++++-+++  .||-.
T Consensus       273 ------------------------~~nsDGkrIvFq~~-----GdIylydP~td~lekldI~lpl~  309 (668)
T COG4946         273 ------------------------NANSDGKRIVFQNA-----GDIYLYDPETDSLEKLDIGLPLD  309 (668)
T ss_pred             ------------------------ccCCCCcEEEEecC-----CcEEEeCCCcCcceeeecCCccc
Confidence                                    24455665565332     3899999999999998  56644

>PTZ00421 coronin; Provisional

Probab=83.81  E-value=41  Score=32.12  Aligned_cols=107  Identities=11%  Similarity=0.099  Sum_probs=52.4

Q ss_pred             CEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeeeeE-EECCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          138 GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFAAG-ELNGRVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       138 ~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      +.+++.|+.+       ..+.+||..+.+-.. +......  -.+++ ..++.+++.|+.+      ..+.+||+.++.-
T Consensus       138 ~~iLaSgs~D-------gtVrIWDl~tg~~~~~l~~h~~~--V~sla~spdG~lLatgs~D------g~IrIwD~rsg~~  202 (493)
T PTZ00421        138 MNVLASAGAD-------MVVNVWDVERGKAVEVIKCHSDQ--ITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGTI  202 (493)
T ss_pred             CCEEEEEeCC-------CEEEEEECCCCeEEEEEcCCCCc--eEEEEEECCCCEEEEecCC------CEEEEEECCCCcE
Confidence            3566666643       368899988765321 2111111  11111 2356777777654      3588999987642


Q ss_pred             E-ecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          216 T-ELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       216 ~-~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      . .+...............++..++.+|.+...    ...+..||+.+.
T Consensus       203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~----Dr~VklWDlr~~  247 (493)
T PTZ00421        203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ----QRQIMLWDTRKM  247 (493)
T ss_pred             EEEEecCCCCcceEEEEcCCCCeEEEEecCCCC----CCeEEEEeCCCC
Confidence            2 2211111111111112244455555554322    235788888653

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=83.07  E-value=21  Score=28.19  Aligned_cols=83  Identities=14%  Similarity=0.170  Sum_probs=48.5

Q ss_pred             EEECCEEEEEcCcCCCCCCCCeEEEEECCCCce-EecCCCccCcC----ceeEE-EECCEEEEEeCcccCCCCceeeeeE
Q 018336          183 GELNGRVIIAGGHDENKTALSSAWAYDLIKDEW-TELARMTQERD----ECEAV-VIGSEFWVVSGYKTERQGIFDESAE  256 (358)
Q Consensus       183 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W-~~~~~~p~~~~----~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~  256 (358)
                      +.++|.+|.++...... ....+..||+.++++ +.++ +|....    ...+. +.+++|-++--....    ..-.|+
T Consensus         2 V~vnG~~hW~~~~~~~~-~~~~IlsFDl~~E~F~~~~~-lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~----~~~~IW   75 (164)
T PF07734_consen    2 VFVNGALHWLAYDENND-EKDFILSFDLSTEKFGRSLP-LPFCNDDDDDSVSLSVVRGDCLCVLYQCDET----SKIEIW   75 (164)
T ss_pred             EEECCEEEeeEEecCCC-CceEEEEEeccccccCCEEC-CCCccCccCCEEEEEEecCCEEEEEEeccCC----ccEEEE
Confidence            56899999987654432 112699999999999 5554 443322    22332 337787777432111    123455


Q ss_pred             EEE---CCCCceEEcCCc
Q 018336          257 SYQ---LGTGEWKRAENA  271 (358)
Q Consensus       257 ~yd---~~~~~W~~~~~~  271 (358)
                      +-+   ....+|+++-..
T Consensus        76 vm~~~~~~~~SWtK~~~i   93 (164)
T PF07734_consen   76 VMKKYGYGKESWTKLFTI   93 (164)
T ss_pred             EEeeeccCcceEEEEEEE
Confidence            544   236789987654

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PLN00181 protein SPA1-RELATED; Provisional

Probab=82.87  E-value=59  Score=33.21  Aligned_cols=101  Identities=15%  Similarity=0.190  Sum_probs=49.9

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE--ECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE--LNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++.+++.|+.+       ..+.+||..+..-..  .+.....-.+...  -++..++.|+.+      ..+.+||..+..
T Consensus       587 ~~~~L~Sgs~D-------g~v~iWd~~~~~~~~--~~~~~~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~  651 (793)
T PLN00181        587 DPTLLASGSDD-------GSVKLWSINQGVSIG--TIKTKANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPK  651 (793)
T ss_pred             CCCEEEEEcCC-------CEEEEEECCCCcEEE--EEecCCCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCC
Confidence            45677777643       368888887643211  1111111111111  246677777644      358999987642


Q ss_pred             --eEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCC
Q 018336          215 --WTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGT  262 (358)
Q Consensus       215 --W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~  262 (358)
                        ...+.....  .-..+...++..++.|+.+        ..+..||+..
T Consensus       652 ~~~~~~~~h~~--~V~~v~f~~~~~lvs~s~D--------~~ikiWd~~~  691 (793)
T PLN00181        652 LPLCTMIGHSK--TVSYVRFVDSSTLVSSSTD--------NTLKLWDLSM  691 (793)
T ss_pred             ccceEecCCCC--CEEEEEEeCCCEEEEEECC--------CEEEEEeCCC
Confidence              222211111  1112234466666666542        2466788764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.54  E-value=28  Score=29.45  Aligned_cols=50  Identities=16%  Similarity=0.213  Sum_probs=28.1

Q ss_pred             cCccCcee--ccccce-eeceEEEEeCCeEEEECCCCCCCCceEEEEECC-CCceEee
Q 018336          287 EGKLFCWA--ETEAAV-QFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGR-NGKFRKF  340 (358)
Q Consensus       287 d~~~~~W~--~lp~~~-r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~-~~~W~~~  340 (358)
                      +.+..+|+  .|-..+ -..+..-.+-|.|+.++|-+    +.+.++... .++|+++
T Consensus       241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd----Nkvtlwke~~~Gkw~~v  294 (299)
T KOG1332|consen  241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD----NKVTLWKENVDGKWEEV  294 (299)
T ss_pred             cCccCcccccccccCCcceEEEEEeccccEEEEecCC----cEEEEEEeCCCCcEEEc
Confidence            56678882  222211 23333444445555554433    678888766 4589998

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=81.01  E-value=32  Score=30.58  Aligned_cols=121  Identities=17%  Similarity=0.206  Sum_probs=73.1

Q ss_pred             ceEEEEeCCCC-----CeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc-EEeCCCCCC
Q 018336          102 YGVTVFDPVSL-----TWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR-WTRGKNMPD  175 (358)
Q Consensus       102 ~~~~~~d~~~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~  175 (358)
                      -.+..|+....     +...+.....+.   + -.+++..+++|.+..|         +.+.+|+...++ +.....+..
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g---~-V~ai~~~~~~lv~~~g---------~~l~v~~l~~~~~l~~~~~~~~  128 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKG---P-VTAICSFNGRLVVAVG---------NKLYVYDLDNSKTLLKKAFYDS  128 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-----EEEEEEETTEEEEEET---------TEEEEEEEETTSSEEEEEEE-B
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecC---c-ceEhhhhCCEEEEeec---------CEEEEEEccCcccchhhheecc
Confidence            46888888874     455443322211   1 2366777888666655         378999998888 877766655


Q ss_pred             CceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE-CCEEEEE
Q 018336          176 NRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI-GSEFWVV  240 (358)
Q Consensus       176 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~  240 (358)
                      +-......+.++.|++.--..     .-.+..|+.+..+-..++.-..++...++..+ ++..++.
T Consensus       129 ~~~i~sl~~~~~~I~vgD~~~-----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~  189 (321)
T PF03178_consen  129 PFYITSLSVFKNYILVGDAMK-----SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIV  189 (321)
T ss_dssp             SSSEEEEEEETTEEEEEESSS-----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEE
T ss_pred             eEEEEEEeccccEEEEEEccc-----CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEE
Confidence            556666667788666542211     12455678877777777755556665566666 6653333

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PTZ00420 coronin; Provisional

Probab=80.27  E-value=60  Score=31.61  Aligned_cols=104  Identities=11%  Similarity=0.189  Sum_probs=50.9

Q ss_pred             EEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceE-
Q 018336          139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWT-  216 (358)
Q Consensus       139 ~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-  216 (358)
                      .+++.|+.+       ..+.+||..+.+-..  .+..+..-.+++. .++.+++.++.+      ..+.+||+.++.=. 
T Consensus       139 ~iLaSgS~D-------gtIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~~i~  203 (568)
T PTZ00420        139 YIMCSSGFD-------SFVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQEIAS  203 (568)
T ss_pred             eEEEEEeCC-------CeEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEecC------CEEEEEECCCCcEEE
Confidence            455566643       368889988765211  1111111112222 367777766533      35899999875421 


Q ss_pred             ecCCCccCcCceeEEE-----ECCEEEEEeCcccCCCCceeeeeEEEECCC
Q 018336          217 ELARMTQERDECEAVV-----IGSEFWVVSGYKTERQGIFDESAESYQLGT  262 (358)
Q Consensus       217 ~~~~~p~~~~~~~~~~-----~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~  262 (358)
                      .+......+ ....+.     -++..++.+|++...    ...+..||..+
T Consensus       204 tl~gH~g~~-~s~~v~~~~fs~d~~~IlTtG~d~~~----~R~VkLWDlr~  249 (568)
T PTZ00420        204 SFHIHDGGK-NTKNIWIDGLGGDDNYILSTGFSKNN----MREMKLWDLKN  249 (568)
T ss_pred             EEecccCCc-eeEEEEeeeEcCCCCEEEEEEcCCCC----ccEEEEEECCC
Confidence            111111111 011111     255566666665432    23578888874

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=80.24  E-value=50  Score=30.68  Aligned_cols=104  Identities=14%  Similarity=0.227  Sum_probs=55.1

Q ss_pred             EECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCC-c--eeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336          135 SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN-R--SFFAAGELNGRVIIAGGHDENKTALSSAWAYDLI  211 (358)
Q Consensus       135 ~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-~--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~  211 (358)
                      ..++.+++.|+-+       ..+-.+|..+..- .+ .+... -  ...+....++.|++.|||++.      +..||+.
T Consensus       120 ~~d~t~l~s~sDd-------~v~k~~d~s~a~v-~~-~l~~htDYVR~g~~~~~~~hivvtGsYDg~------vrl~DtR  184 (487)
T KOG0310|consen  120 PQDNTMLVSGSDD-------KVVKYWDLSTAYV-QA-ELSGHTDYVRCGDISPANDHIVVTGSYDGK------VRLWDTR  184 (487)
T ss_pred             ccCCeEEEecCCC-------ceEEEEEcCCcEE-EE-EecCCcceeEeeccccCCCeEEEecCCCce------EEEEEec
Confidence            4578888888732       1334445544442 11 11111 1  112222346889999999864      8899998


Q ss_pred             CCceEecCCCccCcCceeEEEEC-CEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          212 KDEWTELARMTQERDECEAVVIG-SEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       212 t~~W~~~~~~p~~~~~~~~~~~~-~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      +.+ ..+-.+.....--.++.+. |.+++.+|-         +.+-+||..++
T Consensus       185 ~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG---------n~vkVWDl~~G  227 (487)
T KOG0310|consen  185 SLT-SRVVELNHGCPVESVLALPSGSLIASAGG---------NSVKVWDLTTG  227 (487)
T ss_pred             cCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC---------CeEEEEEecCC
Confidence            774 2223333322222344443 356665543         25677888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
2xn4_A	302	Crystal Structure Of The Kelch Domain Of Human Klhl		2e-08
2vpj_A	301	Crystal Structure Of The Kelch Domain Of Human Klhl		9e-08
2vpj_A	301	Crystal Structure Of The Kelch Domain Of Human Klhl		3e-06
2woz_A	318	The Novel Beta-Propeller Of The Btb-Kelch Protein K		2e-07
4asc_A	315	Crystal Structure Of The Kelch Domain Of Human Kbtb		4e-06
3ii7_A	306	Crystal Structure Of The Kelch Domain Of Human Klhl		6e-05
2dyh_A	318	Crystal Structure Of The Keap1 Protein In Complexed		4e-04
1x2j_A	316	Structural Basis For The Defects Of Human Lung Canc		4e-04
3av4_A	1330	Crystal Structure Of Mouse Dna Methyltransferase 1		6e-04
3pt9_A	873	Crystal Structure Of Mouse Dnmt1(731-1602) In The F		6e-04
3pt6_A	954	Crystal Structure Of Mouse Dnmt1(650-1602) In Compl		9e-04

>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD 213
           V  V  YD    +WT   NM D RS   A  LNG +   GG D   T LSS  AY++  +
Sbjct: 76  VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFD-GSTGLSSVEAYNIKSN 134
Query: 214 EWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKR-AENAW 272
           EW  +A M   R      V+G   + V GY    +     + E Y   T EW   AE + 
Sbjct: 135 EWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCL-STVECYNATTNEWTYIAEMST 193
Query: 273 KLSQCPRSNVGVGREGKLF 291
           +     RS  GVG    L 
Sbjct: 194 R-----RSGAGVGVLNNLL 207

>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 107 FDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR 166
           +DP    W  LG +     G  L      + G +  +GG+D    + ++ V  YD  T  
Sbjct: 133 YDPNIDQWSMLGDMQTAREGAGLVV----ASGVIYCLGGYD--GLNILNSVEKYDPHTGH 186
Query: 167 WTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERD 226
           WT    M   RS      LN  + + GG D     LSS  AY++  D WT +  MT  R 
Sbjct: 187 WTNVTPMATKRSGAGVALLNDHIYVVGGFD-GTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245
Query: 227 ECEAVVIGSEFWVVSGYK 244
              A V+    + ++GY 
Sbjct: 246 YVGATVLRGRLYAIAGYD 263

>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 140 LVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENK 199
           L+V+GG+  +  SP+  V  YD  T+ W+   ++   R + A+  L+ R+ + GG+D  +
Sbjct: 17  LLVVGGFG-SQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYD-GR 74
Query: 200 TALSSAWAYDLIKDE---WTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAE 256
           + LSS    D   DE   W  +A M   R    A  +G   +V  G+   R+     S E
Sbjct: 75  SRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRR---HTSME 131
Query: 257 SYQLGTGEWKRAENAWKLSQCPRSNVG-VGREGKLFC 292
            Y     +W    +     Q  R   G V   G ++C
Sbjct: 132 RYDPNIDQWSMLGDM----QTAREGAGLVVASGVIYC 164

>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 6/140 (4%)
Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
           V  +DPV+  W  +  +P    G      V S  G +  +GG         + VF+Y+  
Sbjct: 129 VLCYDPVAAKWSEVKNLPIKVYG----HNVISHNGMIYCLGG-KTDDKKCTNRVFIYNPK 183
Query: 164 TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ 223
              W     M   RS F      G+++IAGG  E+  + +S  A+DL  ++W  +    Q
Sbjct: 184 KGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLS-ASVEAFDLKTNKWEVMTEFPQ 242
Query: 224 ERDECEAVVIGSEFWVVSGY 243
           ER     V +    + + G+
Sbjct: 243 ERSSISLVSLAGSLYAIGGF 262

>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5 Length = 315

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 6/142 (4%)
Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
           V  +D +S  W    P+P    G         S   LV + G   +    ++ + VYD  
Sbjct: 119 VMCYDRLSFKWGESDPLPYVVYG-----HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPK 173
Query: 164 TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ 223
              W     M   RS F A   +GR+I+A G  +     SSA  Y +  ++W       Q
Sbjct: 174 KFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLT-SSAEVYSITDNKWAPFEAFPQ 232
Query: 224 ERDECEAVVIGSEFWVVSGYKT 245
           ER     V +    + + G+ T
Sbjct: 233 ERSSLSLVSLVGTLYAIGGFAT 254

>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7 Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 7/136 (5%)
Query: 134 ASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAG 193
            +++GK+   GG +  + S +     YD  T  W    +M   R      E NG + + G
Sbjct: 98  CAAEGKIYTSGGSEVGN-SALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCG 156
Query: 194 GHDENKTA---LSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGI 250
           G   N  +   L+S   YD   + WTEL  M + R     V +  + + V G +    G+
Sbjct: 157 GSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGG-QNGLGGL 215
Query: 251 FDESAESYQLGTGEWK 266
             ++ E Y +   EWK
Sbjct: 216 --DNVEYYDIKLNEWK 229

>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With The N-Terminal Region Of The Nrf2 Transcription Factor Length = 318

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 13/170 (7%)
Query: 100 LSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWD--PASYSPVSHV 157
           LSY +  ++P + +W RL  +    +GL   C V    G L  +GG +  P   +  S +
Sbjct: 32  LSY-LEAYNPSNGSWLRLADLQVPRSGLA-GCVVG---GLLYAVGGRNNSPDGNTDSSAL 86
Query: 158 FVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTE 217
             Y+  T +W+   +M   R+    G ++G +   GG        SS   Y+  +DEW  
Sbjct: 87  DCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGG-SHGCIHHSSVERYEPERDEWHL 145
Query: 218 LARMTQERDECEAVVIGSEFWVVSGYK-TERQGIFDESAESYQLGTGEWK 266
           +A M   R      V+    + V G+  T R      SAE Y     EW+
Sbjct: 146 VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL----NSAECYYPERNEWR 191

>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer Somatic Mutations In The Repression Activity Of Keap1 On Nrf2 Length = 316

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 13/170 (7%)
Query: 100 LSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWD--PASYSPVSHV 157
           LSY +  ++P + +W RL  +    +GL   C V    G L  +GG +  P   +  S +
Sbjct: 31  LSY-LEAYNPSNGSWLRLADLQVPRSGLA-GCVVG---GLLYAVGGRNNSPDGNTDSSAL 85
Query: 158 FVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTE 217
             Y+  T +W+   +M   R+    G ++G +   GG        SS   Y+  +DEW  
Sbjct: 86  DCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGG-SHGCIHHSSVERYEPERDEWHL 144
Query: 218 LARMTQERDECEAVVIGSEFWVVSGYK-TERQGIFDESAESYQLGTGEWK 266
           +A M   R      V+    + V G+  T R      SAE Y     EW+
Sbjct: 145 VAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL----NSAECYYPERNEWR 190

>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 Length = 1330

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 290 LFCWAETEAAVQF----GTCRVELGGCTLVTGSGY-QGGPQEFYVVEGRNGKFRKFDVPA 344
           +  W++ EA V F    G C VE G   L +   Y QGGP  FY +E  N K + F+ P 
Sbjct: 754 MLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDPP 813
Query: 345 EY 346
            +
Sbjct: 814 NH 815

>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free State Length = 873

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 289 KLFCWAETEAAVQF----GTCRVELGGCTLVTGSGY-QGGPQEFYVVEGRNGKFRKFDVP 343
            +  W++ EA V F    G C VE G   L +   Y QGGP  FY +E  N K + F+ P
Sbjct: 314 NMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDP 373
Query: 344 AEY 346
             +
Sbjct: 374 PNH 376

>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With Dna Length = 954

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 289 KLFCWAETEAAVQF----GTCRVELGGCTLVTGSGY-QGGPQEFYVVEGRNGKFRKFDVP 343
            +  W++ EA V F    G C VE G   L +   Y QGGP  FY +E  N K + F+ P
Sbjct: 395 NMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDP 454
Query: 344 AEY 346
             +
Sbjct: 455 PNH 457

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	8e-31
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-25
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-25
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	4e-18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	5e-18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-06
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	4e-30
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	1e-28
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	2e-23
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	1e-20
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-29
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	5e-25
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	1e-21
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-17
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	2e-07
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	3e-29
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	2e-28
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	6e-27
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	3e-24
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	4e-09
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	1e-08
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	6e-28
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	9e-26
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-25
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	1e-23
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	1e-22
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-27
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-26
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-24
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-21
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	3e-17
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	4e-17
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-15
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	3e-14
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	2e-11
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	3e-09
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	4e-14
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-13
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	6e-11
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	9e-08
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	1e-07
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	2e-06
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	3e-04

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  118 bits (297), Expect = 8e-31
 Identities = 42/189 (22%), Positives = 72/189 (38%), Gaps = 12/189 (6%)

Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
               D VS  W  L P+P           +     K+ V+ G D  + + +  V  YD  
Sbjct: 80  FFQLDNVSSEWVGLPPLPSARCLF----GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPV 135

Query: 164 TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ 223
             +W+  KN+P           NG +   GG  ++K   +  + Y+  K +W +LA M  
Sbjct: 136 AAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT 195

Query: 224 ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVG 283
            R      +   +  +  G      G+   S E++ L T +W+         Q  RS++ 
Sbjct: 196 PRSMFGVAIHKGKIVIAGGV--TEDGLSA-SVEAFDLKTNKWEVMTE---FPQ-ERSSIS 248

Query: 284 VG-REGKLF 291
           +    G L+
Sbjct: 249 LVSLAGSLY 257

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  103 bits (260), Expect = 1e-25
 Identities = 41/188 (21%), Positives = 64/188 (34%), Gaps = 22/188 (11%)

Query: 106 VFDPVSLTWDRLGPVPE--YPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
            +DPV+  W  +  +P   Y         V S  G +  +GG         + VF+Y+  
Sbjct: 131 CYDPVAAKWSEVKNLPIKVYGHN------VISHNGMIYCLGGKT-DDKKCTNRVFIYNPK 183

Query: 164 TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ 223
              W     M   RS F      G+++IAGG  E+    +S  A+DL  ++W  +    Q
Sbjct: 184 KGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGL-SASVEAFDLKTNKWEVMTEFPQ 242

Query: 224 ERDECEAVVIGSEFWVVSGY------KTERQGIFDESAESYQLGTGEWKRAENAWKLSQC 277
           ER     V +    + + G+        E           Y+    EW            
Sbjct: 243 ERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLK------E 296

Query: 278 PRSNVGVG 285
            R   G  
Sbjct: 297 IRYASGAS 304

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  102 bits (257), Expect = 3e-25
 Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 15/194 (7%)

Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASY----SPVSHVFV 159
              +DP+           + P        + + Q ++ V+GG             S+ F 
Sbjct: 26  AVAYDPMENECYLTALAEQIPRN---HSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQ 82

Query: 160 YDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHD-ENKTALSSAWAYDLIKDEWTEL 218
            D  +  W     +P  R  F  GE++ ++ +  G D + + +L S   YD +  +W+E+
Sbjct: 83  LDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV 142

Query: 219 ARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCP 278
             +  +      +      + + G  T+ +   +     Y    G+WK         + P
Sbjct: 143 KNLPIKVYGHNVISHNGMIYCLGGK-TDDKKCTN-RVFIYNPKKGDWKDLAPM----KTP 196

Query: 279 RSNVGVG-REGKLF 291
           RS  GV   +GK+ 
Sbjct: 197 RSMFGVAIHKGKIV 210

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 83.2 bits (206), Expect = 4e-18
 Identities = 24/165 (14%), Positives = 49/165 (29%), Gaps = 21/165 (12%)

Query: 135 SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFAAGELNGRVIIAG 193
             +  ++++           +    YD                R+  +      +V + G
Sbjct: 13  FVKDLILLVND---------TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVG 63

Query: 194 GHDEN-----KTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQ 248
           G   +     +   S  +  D +  EW  L  +   R       +  + +VV+G   + +
Sbjct: 64  GLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTE 123

Query: 249 GIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVG-REGKLFC 292
              D S   Y     +W   +N   L         V    G ++C
Sbjct: 124 ASLD-SVLCYDPVAAKWSEVKN---LPI-KVYGHNVISHNGMIYC 163

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 82.8 bits (205), Expect = 5e-18
 Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 20/139 (14%)

Query: 106 VFDPVSLTWDRLGP--VPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
           +++P    W  L P   P    G      VA  +GK+V+ GG         + V  +D  
Sbjct: 179 IYNPKKGDWKDLAPMKTPRSMFG------VAIHKGKIVIAGGVTEDGL--SASVEAFDLK 230

Query: 164 TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENK--------TALSSAWAYDLIKDEW 215
           T +W      P  RS  +   L G +   GG    +        T ++  W Y+  K EW
Sbjct: 231 TNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEW 290

Query: 216 TELARMTQERDECEAVVIG 234
             + +    R    A  + 
Sbjct: 291 AGMLKEI--RYASGASCLA 307

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 13/92 (14%)

Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWD-------PASYSPVSH 156
           V  FD  +  W+ +   P+  +       + S  G L  +GG+          + + V+ 
Sbjct: 224 VEAFDLKTNKWEVMTEFPQERSS----ISLVSLAGSLYAIGGFAMIQLESKEFAPTEVND 279

Query: 157 VFVYDFTTRRWTRGKNMPDNRSFFAAGELNGR 188
           ++ Y+   + W         R    A  L  R
Sbjct: 280 IWKYEDDKKEWAGMLKEI--RYASGASCLATR 309

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  115 bits (291), Expect = 4e-30
 Identities = 37/190 (19%), Positives = 57/190 (30%), Gaps = 13/190 (6%)

Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
              F+P   +W  +    E                 + ++GG       P+  +  Y+  
Sbjct: 26  CRYFNPKDYSWTDIRCPFEKRRD----AACVFWDNVVYILGGSQ---LFPIKRMDCYNVV 78

Query: 164 TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ 223
              W      P  R   AA    G++  +GG +   +AL     YD   + W     M  
Sbjct: 79  KDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT 138

Query: 224 ERDECEAVVIGSEFWVVSGYK-TERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNV 282
           +R     V      +V  G       G    S E Y   T  W             R N 
Sbjct: 139 QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP----MIEARKNH 194

Query: 283 GVG-REGKLF 291
           G+   + K+F
Sbjct: 195 GLVFVKDKIF 204

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  111 bits (280), Expect = 1e-28
 Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 17/183 (9%)

Query: 106 VFDPVSLTWDRLGPVPE--YPAGLPLFCQVASSQGKLVVMGGWDPASYSP--VSHVFVYD 161
            +D  + +W     +       G      +  + G + V GG    + S   ++   VYD
Sbjct: 122 CYDTRTESWHTKPSMLTQRCSHG------MVEANGLIYVCGGSLGNNVSGRVLNSCEVYD 175

Query: 162 FTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM 221
             T  WT    M + R       +  ++   GG +     L +   YD+  +EW  ++ M
Sbjct: 176 PATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGL-GGLDNVEYYDIKLNEWKMVSPM 234

Query: 222 TQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSN 281
             +    +   +GS  +V++G++    G        Y   T +W        +   P ++
Sbjct: 235 PWKGVTVKCAAVGSIVYVLAGFQG--VGRLG-HILEYNTETDKWVANSK---VRAFPVTS 288

Query: 282 VGV 284
             +
Sbjct: 289 CLI 291

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 97.4 bits (243), Expect = 2e-23
 Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 15/160 (9%)

Query: 134 ASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAG 193
                ++ + GG  P S         ++     WT  +   + R   A    +  V I G
Sbjct: 9   KKHDYRIALFGGSQPQS------CRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILG 62

Query: 194 GHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDE 253
           G       +     Y+++KD W         RD   A     + +   G           
Sbjct: 63  GSQLF--PIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGS-EVGNSALY- 118

Query: 254 SAESYQLGTGEWKRAENAWKLSQCPRSNVGVG-REGKLFC 292
             E Y   T  W    +   +    R + G+    G ++ 
Sbjct: 119 LFECYDTRTESWHTKPS---MLT-QRCSHGMVEANGLIYV 154

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 89.7 bits (223), Expect = 1e-20
 Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 11/132 (8%)

Query: 104 VTVFDPVSLTWDRLGP--VPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYD 161
             V+DP + TW  L P        G      +   + K+  +GG +      + +V  YD
Sbjct: 171 CEVYDPATETWTELCPMIEARKNHG------LVFVKDKIFAVGGQN--GLGGLDNVEYYD 222

Query: 162 FTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM 221
                W     MP          +   V +  G       L     Y+   D+W   +++
Sbjct: 223 IKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGV-GRLGHILEYNTETDKWVANSKV 281

Query: 222 TQERDECEAVVI 233
                    + +
Sbjct: 282 RAFPVTSCLICV 293

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score =  114 bits (287), Expect = 2e-29
 Identities = 45/205 (21%), Positives = 72/205 (35%), Gaps = 13/205 (6%)

Query: 89  HSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDP 148
              + + K   +S     FD +   W  + P+P           +  +   + V+GG + 
Sbjct: 54  LFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF----GLGEALNSIYVVGGREI 109

Query: 149 AS-YSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWA 207
                 +  V  YD  + +W     +P              V + GG   ++  L+    
Sbjct: 110 KDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCV 169

Query: 208 YDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKR 267
           YD  K EW ELA M   R    A V      V +G      G+   SAE Y +   +W  
Sbjct: 170 YDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGV--TDTGLTS-SAEVYSITDNKWAP 226

Query: 268 AENAWKLSQCPRSNVGVGR-EGKLF 291
            E      Q  RS++ +    G L+
Sbjct: 227 FEA---FPQ-ERSSLSLVSLVGTLY 247

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score =  102 bits (256), Expect = 5e-25
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 16/196 (8%)

Query: 103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASY----SPVSHVF 158
           G   +DP +          + P        + + + ++ V GG             ++  
Sbjct: 14  GAVAYDPAANECYCASLSSQVPK---NHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFL 70

Query: 159 VYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDE--NKTALSSAWAYDLIKDEWT 216
            +D     W     +P  R  F  GE    + + GG +    +  L S   YD +  +W 
Sbjct: 71  QFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG 130

Query: 217 ELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQ 276
           E   +         +      +V+ G  ++R+ +       Y     EWK         Q
Sbjct: 131 ESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL--NKMCVYDPKKFEWKELAPM----Q 184

Query: 277 CPRSNVGVG-REGKLF 291
             RS  G    +G++ 
Sbjct: 185 TARSLFGATVHDGRII 200

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 93.2 bits (232), Expect = 1e-21
 Identities = 31/151 (20%), Positives = 48/151 (31%), Gaps = 20/151 (13%)

Query: 104 VTVFDPVSLTWDRLGP--VPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYD 161
           + V+DP    W  L P        G           G+++V  G         S   VY 
Sbjct: 167 MCVYDPKKFEWKELAPMQTARSLFG------ATVHDGRIIVAAGVT--DTGLTSSAEVYS 218

Query: 162 FTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENK--------TALSSAWAYDLIKD 213
            T  +W   +  P  RS  +   L G +   GG    +        T L+  W Y+  + 
Sbjct: 219 ITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278

Query: 214 EWTELARMTQERDECEAVVIGSEFWVVSGYK 244
           +W  + R         A  +     V+   K
Sbjct: 279 KWEGVLREI--AYAAGATFLPVRLNVLRLTK 307

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 80.9 bits (200), Expect = 2e-17
 Identities = 20/162 (12%), Positives = 46/162 (28%), Gaps = 20/162 (12%)

Query: 137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRW-TRGKNMPDNRSFFAAGELNGRVIIAGGH 195
           Q  + ++                YD           +    ++  +      +V +AGG 
Sbjct: 4   QDLIFMISEEG---------AVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGL 54

Query: 196 DENK-----TALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGI 250
             N+        +    +D +  EW  +  +   R         +  +VV G + +    
Sbjct: 55  FYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGER 114

Query: 251 FDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVG-REGKLF 291
             +S   Y   + +W  ++    L         V      ++
Sbjct: 115 CLDSVMCYDRLSFKWGESDP---LPY-VVYGHTVLSHMDLVY 152

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 13/104 (12%), Positives = 30/104 (28%), Gaps = 13/104 (12%)

Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWD-------PASYSPVSH 156
             V+      W      P+  +       + S  G L  +GG+            + ++ 
Sbjct: 214 AEVYSITDNKWAPFEAFPQERSS----LSLVSLVGTLYAIGGFATLETESGELVPTELND 269

Query: 157 VFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKT 200
           ++ Y+   ++W              A  L  R+ +       + 
Sbjct: 270 IWRYNEEEKKWEGVLREI--AYAAGATFLPVRLNVLRLTKMAEN 311

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  113 bits (285), Expect = 3e-29
 Identities = 51/182 (28%), Positives = 71/182 (39%), Gaps = 12/182 (6%)

Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
           V  +D     W ++  +P           +    G +  +GG++      V  V  YD  
Sbjct: 32  VECYDFKEERWHQVAELPSRRCR----AGMVYMAGLVFAVGGFN--GSLRVRTVDSYDPV 85

Query: 164 TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ 223
             +WT   NM D RS   A  LNG +   GG D + T LSS  AY++  +EW  +A M  
Sbjct: 86  KDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVAPMNT 144

Query: 224 ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVG 283
            R      V+G   + V GY    +     + E Y   T EW             RS  G
Sbjct: 145 RRSSVGVGVVGGLLYAVGGYDVASRQCLS-TVECYNATTNEWTYIAEM----STRRSGAG 199

Query: 284 VG 285
           VG
Sbjct: 200 VG 201

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  111 bits (279), Expect = 2e-28
 Identities = 49/183 (26%), Positives = 65/183 (35%), Gaps = 15/183 (8%)

Query: 104 VTVFDPVSLTWDRLGPVPE--YPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYD 161
           V  ++  S  W  + P+       G      V    G L  +GG+D AS   +S V  Y+
Sbjct: 126 VEAYNIKSNEWFHVAPMNTRRSSVG------VGVVGGLLYAVGGYDVASRQCLSTVECYN 179

Query: 162 FTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM 221
            TT  WT    M   RS    G LN  +   GGHD       S   YD   + W ++A M
Sbjct: 180 ATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLV-RKSVEVYDPTTNAWRQVADM 238

Query: 222 TQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSN 281
              R       +    +VV G           S E Y   T +W    +        RS 
Sbjct: 239 NMCRRNAGVCAVNGLLYVVGGDDG---SCNLASVEYYNPTTDKWTVVSS---CMSTGRSY 292

Query: 282 VGV 284
            GV
Sbjct: 293 AGV 295

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  107 bits (269), Expect = 6e-27
 Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 14/182 (7%)

Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
           V  +DPV   W  +  + +  + L      A   G L  +GG+D ++   +S V  Y+  
Sbjct: 79  VDSYDPVKDQWTSVANMRDRRSTL----GAAVLNGLLYAVGGFDGSTG--LSSVEAYNIK 132

Query: 164 TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHD-ENKTALSSAWAYDLIKDEWTELARMT 222
           +  W     M   RS    G + G +   GG+D  ++  LS+   Y+   +EWT +A M+
Sbjct: 133 SNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS 192

Query: 223 QERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNV 282
             R      V+ +  + V G+         +S E Y   T  W++  +        R N 
Sbjct: 193 TRRSGAGVGVLNNLLYAVGGHDGPL---VRKSVEVYDPTTNAWRQVADM----NMCRRNA 245

Query: 283 GV 284
           GV
Sbjct: 246 GV 247

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  100 bits (250), Expect = 3e-24
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 11/160 (6%)

Query: 133 VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIA 192
              +  KL+V+ G    +   +  V  YDF   RW +   +P  R       + G V   
Sbjct: 10  TPMNLPKLMVVVGGQ--APKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAV 67

Query: 193 GGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFD 252
           GG +     + +  +YD +KD+WT +A M   R    A V+    + V G+  +      
Sbjct: 68  GGFN-GSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGF--DGSTGLS 124

Query: 253 ESAESYQLGTGEWKRAENAWKLSQCPRSNVGVG-REGKLF 291
            S E+Y + + EW        ++   RS+VGVG   G L+
Sbjct: 125 -SVEAYNIKSNEWFHVAP---MNT-RRSSVGVGVVGGLLY 159

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 56.1 bits (136), Expect = 4e-09
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 9/117 (7%)

Query: 177 RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSE 236
           R+         ++++  G    K A+ S   YD  ++ W ++A +   R     V +   
Sbjct: 5   RTRLRTPMNLPKLMVVVGGQAPK-AIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGL 63

Query: 237 FWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGR-EGKLFC 292
            + V G+          + +SY     +W    N   +    RS +G     G L+ 
Sbjct: 64  VFAVGGFN--GSLRVR-TVDSYDPVKDQWTSVAN---MRD-RRSTLGAAVLNGLLYA 113

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
           V V+DP +  W ++  +            V +  G L V+GG D +    ++ V  Y+ T
Sbjct: 222 VEVYDPTTNAWRQVADMNMCRRN----AGVCAVNGLLYVVGGDDGSCN--LASVEYYNPT 275

Query: 164 TRRWTR-GKNMPDNRSFFAAGELNGRV 189
           T +WT     M   RS+     ++ R+
Sbjct: 276 TDKWTVVSSCMSTGRSYAGVTVIDKRL 302

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  110 bits (276), Expect = 6e-28
 Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 18/183 (9%)

Query: 104 VTVFDPVSLTWDRLGPVPE--YPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYD 161
           +  +DP    W  LG +      AG      +  + G +  +GG+D    + ++ V  YD
Sbjct: 130 MERYDPNIDQWSMLGDMQTAREGAG------LVVASGVIYCLGGYD--GLNILNSVEKYD 181

Query: 162 FTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM 221
             T  WT    M   RS      LN  + + GG D     LSS  AY++  D WT +  M
Sbjct: 182 PHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAH-LSSVEAYNIRTDSWTTVTSM 240

Query: 222 TQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSN 281
           T  R    A V+    + ++GY  +   +   S E Y      W+   +        R +
Sbjct: 241 TTPRCYVGATVLRGRLYAIAGY--DGNSLLS-SIECYDPIIDSWEVVTS----MGTQRCD 293

Query: 282 VGV 284
            GV
Sbjct: 294 AGV 296

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  103 bits (260), Expect = 9e-26
 Identities = 46/187 (24%), Positives = 67/187 (35%), Gaps = 21/187 (11%)

Query: 104 VTVFDPVSLTWDRLGPVPE--YPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYD 161
           V  +DP +  W  L  +                S   ++ V+GG+D    S +S V   D
Sbjct: 33  VEKYDPKTQEWSFLPSITRKRRYVA------SVSLHDRIYVIGGYD--GRSRLSSVECLD 84

Query: 162 FTTRR---WTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTEL 218
           +T      W     M   R    A  L   + ++GG D +    +S   YD   D+W+ L
Sbjct: 85  YTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSML 143

Query: 219 ARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCP 278
             M   R+    VV     + + GY  +   I + S E Y   TG W             
Sbjct: 144 GDMQTAREGAGLVVASGVIYCLGGY--DGLNILN-SVEKYDPHTGHWTNVTP----MATK 196

Query: 279 RSNVGVG 285
           RS  GV 
Sbjct: 197 RSGAGVA 203

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  102 bits (256), Expect = 3e-25
 Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 18/192 (9%)

Query: 104 VTVFDPVS---LTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVY 160
           V   D  +     W  + P+              +    + V GG+D       + +  Y
Sbjct: 80  VECLDYTADEDGVWYSVAPMNVRRGLA----GATTLGDMIYVSGGFD--GSRRHTSMERY 133

Query: 161 DFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELAR 220
           D    +W+   +M   R        +G +   GG+D     L+S   YD     WT +  
Sbjct: 134 DPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYD-GLNILNSVEKYDPHTGHWTNVTP 192

Query: 221 MTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRS 280
           M  +R      ++    +VV G+  +       S E+Y + T  W    +       PR 
Sbjct: 193 MATKRSGAGVALLNDHIYVVGGF--DGTAHLS-SVEAYNIRTDSWTTVTSM----TTPRC 245

Query: 281 NVGVGR-EGKLF 291
            VG     G+L+
Sbjct: 246 YVGATVLRGRLY 257

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 98.1 bits (245), Expect = 1e-23
 Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 13/161 (8%)

Query: 135 SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGG 194
            +   L+V+GG+  +  SP+  V  YD  T+ W+   ++   R + A+  L+ R+ + GG
Sbjct: 12  GANEVLLVVGGFG-SQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGG 70

Query: 195 HDENKTALSSAWAYDLIKDE---WTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIF 251
           +D  ++ LSS    D   DE   W  +A M   R    A  +G   +V  G+  +     
Sbjct: 71  YD-GRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGF--DGSRRH 127

Query: 252 DESAESYQLGTGEWKRAENAWKLSQCPRSNVGVG-REGKLF 291
             S E Y     +W    +   +    R   G+    G ++
Sbjct: 128 T-SMERYDPNIDQWSMLGD---MQT-AREGAGLVVASGVIY 163

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 95.8 bits (239), Expect = 1e-22
 Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 7/131 (5%)

Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
           V  +DP +  W  + P+    +G      VA     + V+GG+D  ++  +S V  Y+  
Sbjct: 177 VEKYDPHTGHWTNVTPMATKRSGAG----VALLNDHIYVVGGFDGTAH--LSSVEAYNIR 230

Query: 164 TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ 223
           T  WT   +M   R +  A  L GR+    G+D N   LSS   YD I D W  +  M  
Sbjct: 231 TDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSL-LSSIECYDPIIDSWEVVTSMGT 289

Query: 224 ERDECEAVVIG 234
           +R +    V+ 
Sbjct: 290 QRCDAGVCVLR 300

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  108 bits (271), Expect = 3e-27
 Identities = 44/181 (24%), Positives = 62/181 (34%), Gaps = 18/181 (9%)

Query: 106 VFDPVSLTWDRLGPVPE--YPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
            ++P    W  + P+       G      VA     L  +GG+D  +   ++    Y   
Sbjct: 141 RYEPERDEWHLVAPMLTRRIGVG------VAVLNRLLYAVGGFDGTNR--LNSAECYYPE 192

Query: 164 TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ 223
              W     M   RS      L+  +  AGG+D     L+S   YD+  + WT +A M  
Sbjct: 193 RNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ-LNSVERYDVETETWTFVAPMKH 251

Query: 224 ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVG 283
            R      V     +V+ GY        D S E Y   T  W             RS VG
Sbjct: 252 RRSALGITVHQGRIYVLGGYDG--HTFLD-SVECYDPDTDTWSEVTRM----TSGRSGVG 304

Query: 284 V 284
           V
Sbjct: 305 V 305

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  105 bits (265), Expect = 2e-26
 Identities = 41/186 (22%), Positives = 65/186 (34%), Gaps = 18/186 (9%)

Query: 104 VTVFDPVSLTWDRLGPVPE--YPAGLPLFCQVASSQGKLVVMGGWD--PASYSPVSHVFV 159
           +  ++P + TW RL  +                   G L  +GG +  P   +  S +  
Sbjct: 41  LEAYNPSNGTWLRLADLQVPRSGLA------GCVVGGLLYAVGGRNNSPDGNTDSSALDC 94

Query: 160 YDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA 219
           Y+  T +W+    M   R+    G ++G +   GG        +S   Y+  +DEW  +A
Sbjct: 95  YNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVA 153

Query: 220 RMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPR 279
            M   R      V+    + V G+          SAE Y     EW+            R
Sbjct: 154 PMLTRRIGVGVAVLNRLLYAVGGFDGTN---RLNSAECYYPERNEWRMITA----MNTIR 206

Query: 280 SNVGVG 285
           S  GV 
Sbjct: 207 SGAGVC 212

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  100 bits (251), Expect = 2e-24
 Identities = 34/172 (19%), Positives = 61/172 (35%), Gaps = 14/172 (8%)

Query: 124 PAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAG 183
              +P           +   GG+       +S++  Y+ +   W R  ++   RS  A  
Sbjct: 11  SGLVPRGSHAPKVGRLIYTAGGYFR---QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGC 67

Query: 184 ELNGRVIIAGGHDEN---KTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVV 240
            + G +   GG + +    T  S+   Y+ + ++W+  A M+  R+     VI    + V
Sbjct: 68  VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAV 127

Query: 241 SGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVG-REGKLF 291
            G         + S E Y+    EW        +    R  VGV      L+
Sbjct: 128 GGS--HGCIHHN-SVERYEPERDEWHLVAP---MLT-RRIGVGVAVLNRLLY 172

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 91.6 bits (228), Expect = 3e-21
 Identities = 34/129 (26%), Positives = 48/129 (37%), Gaps = 7/129 (5%)

Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
              + P    W  +  +    +G      V      +   GG+D      ++ V  YD  
Sbjct: 186 AECYYPERNEWRMITAMNTIRSGAG----VCVLHNCIYAAGGYD--GQDQLNSVERYDVE 239

Query: 164 TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ 223
           T  WT    M   RS        GR+ + GG+D + T L S   YD   D W+E+ RMT 
Sbjct: 240 TETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH-TFLDSVECYDPDTDTWSEVTRMTS 298

Query: 224 ERDECEAVV 232
            R      V
Sbjct: 299 GRSGVGVAV 307

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 80.8 bits (199), Expect = 3e-17
 Identities = 30/190 (15%), Positives = 53/190 (27%), Gaps = 28/190 (14%)

Query: 107 FDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPAS---YSPVSHVFVYDFT 163
                  W  L   P  P         A   G L V GG    S       + V  Y+  
Sbjct: 38  TQAKDKKWTALAAFPGGPRD---QATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94

Query: 164 TRRWTR-GKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMT 222
           T  W +   + P   +       NG+  + GG ++N          +    + T + ++ 
Sbjct: 95  TNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQN-IFNGYFEDLNEAGKDSTAIDKIN 153

Query: 223 QERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNV 282
               + +A                    F++   S+   T +W  A           +  
Sbjct: 154 AHYFDKKAEDYF----------------FNKFLLSFDPSTQQWSYAGE---SPWYGTAGA 194

Query: 283 G-VGREGKLF 291
             V +  K +
Sbjct: 195 AVVNKGDKTW 204

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 80.4 bits (198), Expect = 4e-17
 Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 14/157 (8%)

Query: 120 VPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN-RS 178
           +PE P         A     + +  G          +        ++WT     P   R 
Sbjct: 3   LPETPVPFKSGT-GAIDNDTVYIGLGSA----GTAWYKLDTQAKDKKWTALAAFPGGPRD 57

Query: 179 FFAAGELNGRVIIAGGHDEN----KTALSSAWAYDLIKDEWTELA-RMTQERDECEAVVI 233
              +  ++G + + GG  +N        +    Y+   + W +L              V 
Sbjct: 58  QATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVH 117

Query: 234 GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAEN 270
             + +V  G     Q IF+   E       +    + 
Sbjct: 118 NGKAYVTGGV---NQNIFNGYFEDLNEAGKDSTAIDK 151

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 76.1 bits (187), Expect = 1e-15
 Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 24/169 (14%)

Query: 104 VTVFDPVSLTWDRLGPVPEYP-AGLPLFCQVASSQGKLVVMGGWD-PASYSPVSHVFVYD 161
           +  FDP +  W   G  P Y  AG      V +   K  ++ G   P   +       + 
Sbjct: 170 LLSFDPSTQQWSYAGESPWYGTAGAA----VVNKGDKTWLINGEAKPGLRTDAVFELDFT 225

Query: 162 FTTRRWTR--GKNMPDNRSFFAAGELNGRVIIAGGH----------------DENKTALS 203
               +W +    + PD  +   AG  N  +I AGG                  E      
Sbjct: 226 GNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSY 285

Query: 204 SAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFD 252
           S   +     +W +   ++Q R    ++   +   ++ G     + + D
Sbjct: 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTD 334

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 72.3 bits (177), Expect = 3e-14
 Identities = 28/239 (11%), Positives = 58/239 (24%), Gaps = 59/239 (24%)

Query: 106 VFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWD------------------ 147
            ++P + +W +L                    GK  V GG +                  
Sbjct: 90  KYNPKTNSWVKLMSHAPMGMA---GHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDS 146

Query: 148 --------------PASYSPVSHVFVYDFTTRRWTRGKNMPDN-RSFFAAGELNGRVIIA 192
                            Y     +  +D +T++W+     P    +  A      +  + 
Sbjct: 147 TAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLI 206

Query: 193 GGHDENKTALSSAWAY--DLIKDEWTELA--RMTQERDECEAVVIGSEFWVV-SGYKTER 247
            G  +      + +         +W +LA            A +                
Sbjct: 207 NGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGS 266

Query: 248 QGIFDE-------------SAESYQLGTGEWKRAENAWKLSQCPRSN-VGVGREGKLFC 292
           +  +               S + +    G+W ++     LSQ  R+  V +     L  
Sbjct: 267 RENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE---LSQ-GRAYGVSLPWNNSLLI 321

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 63.4 bits (154), Expect = 2e-11
 Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 24/153 (15%)

Query: 92  SGELKPMGLSYGVTVF--DPVSLTWDRLG--PVPEYPAGLPLFCQVASSQGKLVVMGGWD 147
           +GE KP   +  V        +L W++L     P+  AG         S   L+  GG  
Sbjct: 207 NGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG----GFAGISNDSLIFAGGAG 262

Query: 148 PAS---------------YSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIA 192
                                     ++ +   +W +   +   R++  +   N  ++I 
Sbjct: 263 FKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLII 322

Query: 193 GGHDENKTALSSAWAYDLIKDEWTELARMTQER 225
           GG      A++ +    + KD    +  +    
Sbjct: 323 GGETAGGKAVTDSVLITV-KDNKVTVQNLEHHH 354

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 56.9 bits (137), Expect = 3e-09
 Identities = 21/126 (16%), Positives = 33/126 (26%), Gaps = 14/126 (11%)

Query: 173 MPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDL--IKDEWTELARMTQE-RDECE 229
            P           N  V I  G         + +  D      +WT LA      RD+  
Sbjct: 6   TPVPFKSGTGAIDNDTVYIGLGSAGT-----AWYKLDTQAKDKKWTALAAFPGGPRDQAT 60

Query: 230 AVVIGSEFWVVSGY--KTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVG-R 286
           +  I    +V  G    +E           Y   T  W +  +    +    +       
Sbjct: 61  SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMS---HAPMGMAGHVTFVH 117

Query: 287 EGKLFC 292
            GK + 
Sbjct: 118 NGKAYV 123

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 72.9 bits (178), Expect = 4e-14
 Identities = 22/191 (11%), Positives = 52/191 (27%), Gaps = 27/191 (14%)

Query: 106 VFDPVSLTWDRLGPVPEYPAGLPLF--CQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
           +FD  +  W  +  +         F     +   G ++++GG           + +Y+ T
Sbjct: 472 IFDMKTREWSMIKSLSH-----TRFRHSACSLPDGNVLILGGVTEGPA-----MLLYNVT 521

Query: 164 TRRWTRGKNMPDN-------RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWT 216
              +       +                    +I+ GG  +  T    A  +    +  T
Sbjct: 522 EEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENAT 581

Query: 217 ELARMTQE-------RDECEAVVIGS-EFWVVSGYKTERQGIFDESAESYQLGTGEWKRA 268
           E   + ++       R   +   I   +  +V G           S  S    +      
Sbjct: 582 EPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSI 641

Query: 269 ENAWKLSQCPR 279
             + ++ +   
Sbjct: 642 PISRRIWEDHS 652

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 70.5 bits (172), Expect = 2e-13
 Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 16/163 (9%)

Query: 130 FCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWT------RGKNMPDNRSFFAAG 183
           F  V  +   +  MGG +P     V+ +        +            +P  R      
Sbjct: 390 FGDVDVAGNDVFYMGGSNP---YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFT 446

Query: 184 EL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVS 241
            +  N ++++ GG       LS  W +D+   EW+ +  ++  R    A  +     ++ 
Sbjct: 447 TISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLIL 506

Query: 242 GYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV 284
           G  TE       +   Y +    +K      +  Q    + G+
Sbjct: 507 GGVTE-----GPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGL 544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 62.8 bits (152), Expect = 6e-11
 Identities = 31/187 (16%), Positives = 65/187 (34%), Gaps = 17/187 (9%)

Query: 104 VTVFDPVSLTWDRLG-PVPEYPAGLPLFCQVA---SSQGKLVVMGGWDPASYSPVSHVFV 159
           +          D     V      +   C      S   +L+++GG   A +  +S  ++
Sbjct: 414 ILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRK-APHQGLSDNWI 472

Query: 160 YDFTTRRWTRGKNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTEL 218
           +D  TR W+  K++   R   +A  L +G V+I GG  E      +   Y++ ++ + ++
Sbjct: 473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG----PAMLLYNVTEEIFKDV 528

Query: 219 ARMTQERDE------CEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAW 272
               +           E   +  +  ++ G   + Q    + A  ++             
Sbjct: 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMD-QTTVSDKAIIFKYDAENATEPITVI 587

Query: 273 KLSQCPR 279
           K  Q P 
Sbjct: 588 KKLQHPL 594

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 52.7 bits (125), Expect = 9e-08
 Identities = 25/175 (14%), Positives = 49/175 (28%), Gaps = 19/175 (10%)

Query: 103 GVTVFDPVSLTWDRLGPVPEYPAGLP-LFCQVA----SSQGKLVVMGGWDPASYSP---- 153
               +   S      G         P   C  A    + +GK++  GG      S     
Sbjct: 371 MNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTN 430

Query: 154 VSHVFVYDFTTRRWT--RGKNMPDNRSFFAAGEL-NGRVIIAGGHDE-----NKTALSSA 205
              + + +  T   T      +   R+F  +  L +G   I GG        + T + + 
Sbjct: 431 AHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTP 490

Query: 206 WAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESY 258
             Y   +D + +    +  R      ++      +   G            A+ +
Sbjct: 491 EIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIF 545

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 52.3 bits (124), Expect = 1e-07
 Identities = 28/186 (15%), Positives = 50/186 (26%), Gaps = 12/186 (6%)

Query: 43  HYSTHRVATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSY 102
                  +    +                 +      +  V  +  +         G   
Sbjct: 160 INVFQASSYTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGIT 219

Query: 103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFC--QVASSQGKLVVMGGWDPASYSPVSHVFVY 160
             + +DP +                 +FC        G++VV GG D    S      +Y
Sbjct: 220 LTSSWDPSTGIVSDRTVTVTKH---DMFCPGISMDGNGQIVVTGGNDAKKTS------LY 270

Query: 161 DFTTRRWTRGKNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA 219
           D ++  W  G +M   R + ++  + +GRV   GG         +   Y      WT L 
Sbjct: 271 DSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP 330

Query: 220 RMTQER 225
                 
Sbjct: 331 NAKVNP 336

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 48.4 bits (114), Expect = 2e-06
 Identities = 24/191 (12%), Positives = 49/191 (25%), Gaps = 23/191 (12%)

Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDP---ASYSPVSHVFVY 160
             V+ P S TW  L      P        +  S     + G        +    +  + Y
Sbjct: 316 GEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYY 375

Query: 161 DFTTRRWTRGKNMPDNRSFFAAG---------ELNGRVIIAGG--HDENKTALSSAWAYD 209
              +           NR                + G+++  GG    ++  A ++A    
Sbjct: 376 TSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIIT 435

Query: 210 L-----IKDEWTELARMTQERDECEAVVIGS-EFWVVSGYKTERQGIFDE---SAESYQL 260
           L       +       +   R    +VV+     ++  G +            + E Y  
Sbjct: 436 LGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVP 495

Query: 261 GTGEWKRAENA 271
               + +    
Sbjct: 496 EQDTFYKQNPN 506

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 16 QSSTMAEFGELVPGLPEEISLECLTRL-HYSTHRVATRVSRRWRQLIQSRDFYYQR 70
          +    AE  E +  LPE + L  L  L      +    V  RW++L+     +  +
Sbjct: 40 EEEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLK 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.98
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.95
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.94
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.92
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.91
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.78
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.76
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.7
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.11
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.87
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.76
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.62
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.62
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.54
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.47
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.46
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.25
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.97
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	96.87
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.77
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	96.65
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.6
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	96.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.57
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.57
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.44
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.18
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	96.16
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	96.12
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	96.05
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.91
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.85
3jrp_A	379	Fusion protein of protein transport protein SEC13	95.82
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	95.79
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	95.71
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.61
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.59
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	95.58
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.58
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.57
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.5
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.49
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.46
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	95.42
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	95.29
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	95.28
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	95.24
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	95.24
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.2
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	95.05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	95.03
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	94.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	94.82
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	94.73
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	94.64
3jrp_A	379	Fusion protein of protein transport protein SEC13	94.63
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	94.61
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	94.59
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	94.52
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	94.46
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	94.44
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	94.44
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	94.39
4a2l_A	795	BT_4663, two-component system sensor histidine kin	94.26
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	94.23
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	94.17
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	94.13
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	94.12
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	94.06
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	93.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	93.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	93.87
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	93.85
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	93.84
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	93.8
3jro_A	753	Fusion protein of protein transport protein SEC13	93.79
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	93.77
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	93.6
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	93.6
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	93.56
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	93.54
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	93.49
3ow8_A	321	WD repeat-containing protein 61; structural genomi	93.45
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	93.44
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	93.36
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	93.31
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	93.24
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	93.07
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	93.05
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	93.01
3ow8_A	321	WD repeat-containing protein 61; structural genomi	92.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	92.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	92.89
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	92.85
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	92.81
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	92.72
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	92.63
2p4o_A	306	Hypothetical protein; putative lactonase, structur	92.62
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	92.6
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	92.5
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	92.45
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	92.4
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	92.33
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	92.27
3jro_A	753	Fusion protein of protein transport protein SEC13	92.21
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	92.14
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	92.14
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	92.13
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	91.97
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	91.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	91.91
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	91.87
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	91.83
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	91.79
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.59
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	91.5
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	91.3
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	91.29
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	91.26
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	91.24
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	91.19
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	91.14
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	91.06
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	91.06
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	90.98
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	90.98
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	90.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	90.95
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	90.9
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	90.88
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	90.73
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	90.69
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	90.69
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	90.62
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	90.59
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	90.47
2pm7_B	297	Protein transport protein SEC13, protein transport	90.24
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	90.22
3v65_B	386	Low-density lipoprotein receptor-related protein;	90.16
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	90.05
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	90.02
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	89.96
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	89.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	89.93
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	89.85
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	89.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	89.81
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	89.72
3oyo_A	225	Hemopexin fold protein CP4; seeds, plant protein;	89.67
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	89.47
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	89.34
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	89.13
3c7x_A	196	Matrix metalloproteinase-14; membrane protein inte	89.1
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	89.08
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	88.9
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	88.81
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	88.62
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	88.53
3ott_A	758	Two-component system sensor histidine kinase; beta	88.21
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	87.75
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	87.66
3v65_B	386	Low-density lipoprotein receptor-related protein;	87.51
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	87.35
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	87.3
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	87.19
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	87.05
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	87.05
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	86.93
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	86.93
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	86.85
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	86.79
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	86.71
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	86.67
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	86.63
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	86.61
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	86.59
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	86.37
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	86.07
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	86.04
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	85.93
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	85.91
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	85.88
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	85.65
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	85.56
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	85.52
1gen_A	218	Gelatinase A; hydrolase, hemopexin domain, metallo	85.48
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	85.48
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	85.43
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	85.35
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	85.22
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	85.16
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	85.08
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	84.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	84.7
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	84.69
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	84.59
2pm7_B	297	Protein transport protein SEC13, protein transport	84.43
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	84.28
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	84.17
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	84.04
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	83.86
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	83.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	83.66
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	83.59
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	83.41
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	83.13
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	83.07
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	82.98
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	82.69
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	82.15
3ott_A	758	Two-component system sensor histidine kinase; beta	81.26
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	81.21
3ba0_A	365	Macrophage metalloelastase; FULL-length MMP-12, he	80.95
3lp9_A	227	LS-24; SEED albumin, plant protein; HET: SPM; 2.20	80.91
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	80.88
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	80.81
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	80.79
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	80.72
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	80.58
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	80.26
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	80.2
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	80.09

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.4e-39  Score=288.11  Aligned_cols=254  Identities=17%  Similarity=0.176  Sum_probs=214.5

Q ss_pred             ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcc
Q 018336           76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVS  155 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~  155 (358)
                      ....+|++||...            ..+++.||+.+++|..++++|.++    ..+++++.++.||++||..   ....+
T Consensus        10 ~~~~l~~~GG~~~------------~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~lyv~GG~~---~~~~~   70 (306)
T 3ii7_A           10 KHDYRIALFGGSQ------------PQSCRYFNPKDYSWTDIRCPFEKR----RDAACVFWDNVVYILGGSQ---LFPIK   70 (306)
T ss_dssp             CCCEEEEEECCSS------------TTSEEEEETTTTEEEECCCCSCCC----BSCEEEEETTEEEEECCBS---SSBCC
T ss_pred             ccceEEEEeCCCC------------CceEEEecCCCCCEecCCCCCccc----ceeEEEEECCEEEEEeCCC---CCCcc
Confidence            3468889988633            357999999999999999988764    4568888999999999987   24578


Q ss_pred             eeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECC
Q 018336          156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGS  235 (358)
Q Consensus       156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~  235 (358)
                      ++++||+.+++|+.++++|.+|..|+++.++++||++||.+......+++++||+.+++|+.++++|.+|..++++++++
T Consensus        71 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~  150 (306)
T 3ii7_A           71 RMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANG  150 (306)
T ss_dssp             EEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred             eEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECC
Confidence            99999999999999999999999999999999999999987555668899999999999999999999999999999999


Q ss_pred             EEEEEeCcccCCC-CceeeeeEEEECCCCceEEcCCccccCCCCCceeee--------------------eecCccCcee
Q 018336          236 EFWVVSGYKTERQ-GIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV--------------------GREGKLFCWA  294 (358)
Q Consensus       236 ~lyv~gG~~~~~~-~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--------------------~~d~~~~~W~  294 (358)
                      +||++||...... +...+++++||+.+++|+.++.+|.+. ..++.+..                    .||+++++|.
T Consensus       151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  229 (306)
T 3ii7_A          151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEAR-KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWK  229 (306)
T ss_dssp             EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred             EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchh-hcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence            9999999865432 234789999999999999999876421 22222211                    7999999997


Q ss_pred             ccccc--eeeceEEEEeCCeEEEECCCCCCCC-ceEEEEECCCCceEee-cCCCCccCc
Q 018336          295 ETEAA--VQFGTCRVELGGCTLVTGSGYQGGP-QEFYVVEGRNGKFRKF-DVPAEYKGL  349 (358)
Q Consensus       295 ~lp~~--~r~~~~~~~~~~~i~v~gG~~~~~~-~~i~~yd~~~~~W~~~-~~p~~~~~~  349 (358)
                      .++..  .|..++++.++++|||+||...... +++++||+++++|+++ .+|..+.++
T Consensus       230 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~  288 (306)
T 3ii7_A          230 MVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTS  288 (306)
T ss_dssp             ECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTT
T ss_pred             ECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCccccccee
Confidence            77655  4678889999999999999865544 8999999999999999 888887777

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.8e-39  Score=285.64  Aligned_cols=260  Identities=20%  Similarity=0.277  Sum_probs=214.1

Q ss_pred             ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcc
Q 018336           76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVS  155 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~  155 (358)
                      .+..+|++||....          ...++++||+.+++|..++++|.++    ..++++..++.||++||..+..  ..+
T Consensus        14 ~~~~i~v~GG~~~~----------~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~lyv~GG~~~~~--~~~   77 (302)
T 2xn4_A           14 LPKLMVVVGGQAPK----------AIRSVECYDFKEERWHQVAELPSRR----CRAGMVYMAGLVFAVGGFNGSL--RVR   77 (302)
T ss_dssp             -CEEEEEECCBSSS----------BCCCEEEEETTTTEEEEECCCSSCC----BSCEEEEETTEEEEESCBCSSS--BCC
T ss_pred             CCCEEEEECCCCCC----------CCCcEEEEcCcCCcEeEcccCCccc----ccceEEEECCEEEEEeCcCCCc--ccc
Confidence            35678889886431          2457999999999999999888764    4567888899999999986542  478


Q ss_pred             eeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECC
Q 018336          156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGS  235 (358)
Q Consensus       156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~  235 (358)
                      ++++||+.+++|+.++++|.+|..|+++.++++||++||.+.. ...+++++||+.+++|+.++++|.+|..++++++++
T Consensus        78 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~  156 (302)
T 2xn4_A           78 TVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGG  156 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETT
T ss_pred             ceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecCCCCCcccCceEEEECC
Confidence            9999999999999999999999999999999999999998754 456889999999999999999999999999999999


Q ss_pred             EEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee--------------------eecCccCceec
Q 018336          236 EFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV--------------------GREGKLFCWAE  295 (358)
Q Consensus       236 ~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--------------------~~d~~~~~W~~  295 (358)
                      +||++||..... ....+++++||+.+++|+.++.+|.+. ..++.+..                    .||+++++|..
T Consensus       157 ~iyv~GG~~~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  234 (302)
T 2xn4_A          157 LLYAVGGYDVAS-RQCLSTVECYNATTNEWTYIAEMSTRR-SGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ  234 (302)
T ss_dssp             EEEEECCEETTT-TEECCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEE
T ss_pred             EEEEEeCCCCCC-CccccEEEEEeCCCCcEEECCCCcccc-ccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEee
Confidence            999999986542 134678999999999999998876421 22222211                    79999999977


Q ss_pred             cccc--eeeceEEEEeCCeEEEECCCCCCCC-ceEEEEECCCCceEee--cCCCCccCceeeeeEE
Q 018336          296 TEAA--VQFGTCRVELGGCTLVTGSGYQGGP-QEFYVVEGRNGKFRKF--DVPAEYKGLVQSGCCV  356 (358)
Q Consensus       296 lp~~--~r~~~~~~~~~~~i~v~gG~~~~~~-~~i~~yd~~~~~W~~~--~~p~~~~~~~~~~~~~  356 (358)
                      ++..  .|..++++.++++|||+||...... +++++||+++++|+.+  .+|.++..+  ++|.+
T Consensus       235 ~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r~~~--~~~~~  298 (302)
T 2xn4_A          235 VADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYA--GVTVI  298 (302)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCCBSC--EEEEE
T ss_pred             CCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCcccccc--eEEEe
Confidence            7654  4678889999999999999865443 8899999999999999  578777776  55544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=3.1e-39  Score=286.11  Aligned_cols=260  Identities=16%  Similarity=0.193  Sum_probs=214.7

Q ss_pred             CccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCC--CCCC
Q 018336           75 KTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDP--ASYS  152 (358)
Q Consensus        75 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~--~~~~  152 (358)
                      ..+..+|++||... .         ...++++||+.+++|..++++|.++    ..++++..++.||++||...  ....
T Consensus        22 ~~~~~i~v~GG~~~-~---------~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~lyv~GG~~~~~~~~~   87 (308)
T 1zgk_A           22 KVGRLIYTAGGYFR-Q---------SLSYLEAYNPSNGTWLRLADLQVPR----SGLAGCVVGGLLYAVGGRNNSPDGNT   87 (308)
T ss_dssp             CCCCCEEEECCBSS-S---------BCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEEEECCEEEETTEEE
T ss_pred             CCCCEEEEEeCcCC-C---------CcceEEEEcCCCCeEeECCCCCccc----ccceEEEECCEEEEECCCcCCCCCCe
Confidence            34668889988621 1         3467999999999999999888764    45688888999999999731  1113


Q ss_pred             CcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE
Q 018336          153 PVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV  232 (358)
Q Consensus       153 ~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~  232 (358)
                      ..+++++||+.+++|+.++++|.+|..|+++.++++||++||.+.. ...+++++||+.+++|+.++++|.+|..+++++
T Consensus        88 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  166 (308)
T 1zgk_A           88 DSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV  166 (308)
T ss_dssp             ECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred             ecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCccccceEEEE
Confidence            4678999999999999999999999999999999999999998764 457889999999999999999999999999999


Q ss_pred             ECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee--------------------eecCccCc
Q 018336          233 IGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV--------------------GREGKLFC  292 (358)
Q Consensus       233 ~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--------------------~~d~~~~~  292 (358)
                      ++++||++||.....   ..+++++||+.+++|+.++.+|.+. ..++.+..                    .||+++++
T Consensus       167 ~~~~iyv~GG~~~~~---~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~  242 (308)
T 1zgk_A          167 LNRLLYAVGGFDGTN---RLNSAECYYPERNEWRMITAMNTIR-SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET  242 (308)
T ss_dssp             ETTEEEEECCBCSSC---BCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ECCEEEEEeCCCCCC---cCceEEEEeCCCCeEeeCCCCCCcc-ccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence            999999999987543   3778999999999999999876421 22222111                    79999999


Q ss_pred             eeccccc--eeeceEEEEeCCeEEEECCCCCCCC-ceEEEEECCCCceEee-cCCCCccCceeeeeE
Q 018336          293 WAETEAA--VQFGTCRVELGGCTLVTGSGYQGGP-QEFYVVEGRNGKFRKF-DVPAEYKGLVQSGCC  355 (358)
Q Consensus       293 W~~lp~~--~r~~~~~~~~~~~i~v~gG~~~~~~-~~i~~yd~~~~~W~~~-~~p~~~~~~~~~~~~  355 (358)
                      |..+++.  .|..++++.++++|||+||...... +++++||+++++|+++ .+|.++..+  ++|+
T Consensus       243 W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~--~~~~  307 (308)
T 1zgk_A          243 WTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGV--GVAV  307 (308)
T ss_dssp             EEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC--EEEE
T ss_pred             EEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCCcccc--eeEe
Confidence            9777654  4678889999999999999875543 8999999999999999 899888777  4443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=281.36  Aligned_cols=260  Identities=18%  Similarity=0.264  Sum_probs=215.4

Q ss_pred             ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcc
Q 018336           76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVS  155 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~  155 (358)
                      .+..+|++||.....        ....++++||+.+++|..++.+|.++    ..++++..++.||++||..+.  ...+
T Consensus        13 ~~~~i~~~GG~~~~~--------~~~~~~~~~d~~~~~W~~~~~~p~~r----~~~~~~~~~~~l~v~GG~~~~--~~~~   78 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQ--------SPIDVVEKYDPKTQEWSFLPSITRKR----RYVASVSLHDRIYVIGGYDGR--SRLS   78 (301)
T ss_dssp             CCEEEEEECCEETTT--------EECCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEEEECCBCSS--CBCC
T ss_pred             CCCEEEEEeCccCCC--------cceeEEEEEcCCCCeEEeCCCCChhh----ccccEEEECCEEEEEcCCCCC--ccCc
Confidence            456788888832211        13568999999999999999888754    456888899999999998643  3578


Q ss_pred             eeEEEECCCCc---EEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE
Q 018336          156 HVFVYDFTTRR---WTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV  232 (358)
Q Consensus       156 ~~~~yd~~t~~---W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~  232 (358)
                      ++++||+.+++   |+.++++|.+|..|+++.++++||++||.... ...+++++||+.+++|+.++++|.+|..+++++
T Consensus        79 ~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  157 (301)
T 2vpj_A           79 SVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGS-RRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV  157 (301)
T ss_dssp             CEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSS-CBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE
T ss_pred             eEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCC-cccceEEEEcCCCCeEEECCCCCCCcccceEEE
Confidence            99999999999   99999999999999999999999999998754 457899999999999999999999999999999


Q ss_pred             ECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee--------------------eecCccCc
Q 018336          233 IGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV--------------------GREGKLFC  292 (358)
Q Consensus       233 ~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--------------------~~d~~~~~  292 (358)
                      ++++||++||.....   ..+++++||+.+++|+.++.+|.+. ..++.+..                    .||+++++
T Consensus       158 ~~~~iyv~GG~~~~~---~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  233 (301)
T 2vpj_A          158 ASGVIYCLGGYDGLN---ILNSVEKYDPHTGHWTNVTPMATKR-SGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS  233 (301)
T ss_dssp             ETTEEEEECCBCSSC---BCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ECCEEEEECCCCCCc---ccceEEEEeCCCCcEEeCCCCCccc-ccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence            999999999986543   4789999999999999998876421 12222211                    69999999


Q ss_pred             eeccccc--eeeceEEEEeCCeEEEECCCCCCCC-ceEEEEECCCCceEee-cCCCCccCceeeeeEE
Q 018336          293 WAETEAA--VQFGTCRVELGGCTLVTGSGYQGGP-QEFYVVEGRNGKFRKF-DVPAEYKGLVQSGCCV  356 (358)
Q Consensus       293 W~~lp~~--~r~~~~~~~~~~~i~v~gG~~~~~~-~~i~~yd~~~~~W~~~-~~p~~~~~~~~~~~~~  356 (358)
                      |..++..  .|..++++.++++|||+||...... +++++||+++++|+.+ .+|.++..+  ++|.+
T Consensus       234 W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~--~~~~~  299 (301)
T 2vpj_A          234 WTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDA--GVCVL  299 (301)
T ss_dssp             EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEEESC--EEEEE
T ss_pred             EEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCcccccc--eEEEe
Confidence            9777644  4678889999999999999865544 8999999999999999 888887777  55654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=3.2e-38  Score=280.51  Aligned_cols=250  Identities=15%  Similarity=0.176  Sum_probs=201.5

Q ss_pred             cceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcC----CCCCC
Q 018336           77 HKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWD----PASYS  152 (358)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~----~~~~~  152 (358)
                      +..++++|+.                ++++|||.+++|.. +++|.+.  .+..+++++.++.||++||..    .....
T Consensus         4 ~~~l~~~GG~----------------~~~~yd~~~~~W~~-~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~   64 (315)
T 4asc_A            4 QDLIFMISEE----------------GAVAYDPAANECYC-ASLSSQV--PKNHVSLVTKENQVFVAGGLFYNEDNKEDP   64 (315)
T ss_dssp             EEEEEEEETT----------------EEEEEETTTTEEEE-EECCCCS--CSSEEEEECTTCCEEEEEEEEECSSCSSSC
T ss_pred             ceEEEEEcCC----------------ceEEECCCCCeEec-CCCCCCC--CccceEEEEECCEEEEEcCcccCCCCCccc
Confidence            4578888873                78999999999986 5565432  156778888899999999962    22222


Q ss_pred             CcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCC--CCCCCCeEEEEECCCCceEecCCCccCcCceeE
Q 018336          153 PVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDE--NKTALSSAWAYDLIKDEWTELARMTQERDECEA  230 (358)
Q Consensus       153 ~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~  230 (358)
                      ..+++++||+.+++|+.++++|.+|..|+++.++++||++||.+.  .....+++++||+.+++|+.++++|.+|..+++
T Consensus        65 ~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  144 (315)
T 4asc_A           65 MSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTV  144 (315)
T ss_dssp             EEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred             cccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeE
Confidence            345699999999999999999999999999999999999999752  345678999999999999999999999999999


Q ss_pred             EEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee--------------------eecCcc
Q 018336          231 VVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV--------------------GREGKL  290 (358)
Q Consensus       231 ~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--------------------~~d~~~  290 (358)
                      ++++++||++||.....  ...+++++||+.+++|+.++.+|.+. ..++.+..                    .||+++
T Consensus       145 ~~~~~~iyv~GG~~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          145 LSHMDLVYVIGGKGSDR--KCLNKMCVYDPKKFEWKELAPMQTAR-SLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             EEETTEEEEECCBCTTS--CBCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred             EEECCEEEEEeCCCCCC--cccceEEEEeCCCCeEEECCCCCCch-hceEEEEECCEEEEEeccCCCCccceEEEEECCC
Confidence            99999999999984322  35789999999999999999886421 22222221                    799999


Q ss_pred             Cceeccccc--eeeceEEEEeCCeEEEECCCCCC----C------CceEEEEECCCCceEeecCCCCccCc
Q 018336          291 FCWAETEAA--VQFGTCRVELGGCTLVTGSGYQG----G------PQEFYVVEGRNGKFRKFDVPAEYKGL  349 (358)
Q Consensus       291 ~~W~~lp~~--~r~~~~~~~~~~~i~v~gG~~~~----~------~~~i~~yd~~~~~W~~~~~p~~~~~~  349 (358)
                      ++|..+++.  .|..++++.++++|||+||....    +      .+++++||+++++|+++ .|.++..+
T Consensus       222 ~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~r~~~  291 (315)
T 4asc_A          222 NKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV-LREIAYAA  291 (315)
T ss_dssp             TEEEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE-ESCSSCCS
T ss_pred             CeEEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh-ccCCcCcc
Confidence            999777654  57888999999999999998531    1      17899999999999999 45555555

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=3.5e-37  Score=274.19  Aligned_cols=252  Identities=15%  Similarity=0.219  Sum_probs=201.2

Q ss_pred             ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCC--C--C
Q 018336           76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPA--S--Y  151 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~--~--~  151 (358)
                      .+..++++|+.                .+++|||.+++|... +++.+.  .+..++++..++.||++||....  .  .
T Consensus        14 ~~~~i~~~GG~----------------~~~~yd~~~~~W~~~-~~~~~~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~~   74 (318)
T 2woz_A           14 VKDLILLVNDT----------------AAVAYDPMENECYLT-ALAEQI--PRNHSSIVTQQNQVYVVGGLYVDEENKDQ   74 (318)
T ss_dssp             EEEEEEEECSS----------------EEEEEETTTTEEEEE-EECTTS--CSSEEEEECSSSCEEEEESSCC-------
T ss_pred             ecchhhhcccc----------------ceEEECCCCCceecc-cCCccC--CccceEEEEECCEEEEECCcccCccccCC
Confidence            34578888874                578999999999883 444322  14567788889999999995311  1  1


Q ss_pred             CCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCC-CCCCCCeEEEEECCCCceEecCCCccCcCceeE
Q 018336          152 SPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDE-NKTALSSAWAYDLIKDEWTELARMTQERDECEA  230 (358)
Q Consensus       152 ~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~  230 (358)
                      ...+++++||+.+++|+.++++|.+|..|+++.++++||++||... .....+++++||+.+++|+.++++|.+|..+++
T Consensus        75 ~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  154 (318)
T 2woz_A           75 PLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNV  154 (318)
T ss_dssp             CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEE
T ss_pred             CccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEE
Confidence            1234599999999999999999999999999999999999999863 334578999999999999999999999999999


Q ss_pred             EEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee--------------------eecCcc
Q 018336          231 VVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV--------------------GREGKL  290 (358)
Q Consensus       231 ~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--------------------~~d~~~  290 (358)
                      ++++++||++||.....  ...+++++||+.+++|+.++.+|.+. ..++.+..                    .||+++
T Consensus       155 ~~~~~~iyv~GG~~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          155 ISHNGMIYCLGGKTDDK--KCTNRVFIYNPKKGDWKDLAPMKTPR-SMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             EEETTEEEEECCEESSS--CBCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             EEECCEEEEEcCCCCCC--CccceEEEEcCCCCEEEECCCCCCCc-ccceEEEECCEEEEEcCcCCCCccceEEEEECCC
Confidence            99999999999985332  34788999999999999999876321 22222111                    799999


Q ss_pred             Cceeccccc--eeeceEEEEeCCeEEEECCCCCC---------C-CceEEEEECCCCceEeecCCCCccCce
Q 018336          291 FCWAETEAA--VQFGTCRVELGGCTLVTGSGYQG---------G-PQEFYVVEGRNGKFRKFDVPAEYKGLV  350 (358)
Q Consensus       291 ~~W~~lp~~--~r~~~~~~~~~~~i~v~gG~~~~---------~-~~~i~~yd~~~~~W~~~~~p~~~~~~~  350 (358)
                      ++|..+++.  .|..++++.++++|||+||....         . .+++++||+++++|+++ +|..+..+.
T Consensus       232 ~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~r~~~~  302 (318)
T 2woz_A          232 NKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM-LKEIRYASG  302 (318)
T ss_dssp             CCEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE-ESCCGGGTT
T ss_pred             CeEEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh-ccccccccc
Confidence            999777654  47888999999999999998642         1 27899999999999999 677776663

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=4.5e-34  Score=258.21  Aligned_cols=247  Identities=13%  Similarity=0.137  Sum_probs=190.5

Q ss_pred             cceEEEEeeccCCCCCCCCCCCCCcceEEEEeCC--CCCeeecCCCC-CCCCCCCceeEEEEECCEEEEEcCc-C--CCC
Q 018336           77 HKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPV--SLTWDRLGPVP-EYPAGLPLFCQVASSQGKLVVMGGW-D--PAS  150 (358)
Q Consensus        77 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~W~~~~~~~-~~~~~~~~~~~~~~~~~~lyv~Gg~-~--~~~  150 (358)
                      +..+|++||..             ..++++||+.  +++|..++++| .+    +..+++++++++||++||. .  ...
T Consensus        19 ~~~iyv~GG~~-------------~~~~~~~d~~~~~~~W~~~~~~p~~~----R~~~~~~~~~~~lyv~GG~~~~~~~~   81 (357)
T 2uvk_A           19 NDTVYIGLGSA-------------GTAWYKLDTQAKDKKWTALAAFPGGP----RDQATSAFIDGNLYVFGGIGKNSEGL   81 (357)
T ss_dssp             TTEEEEECGGG-------------TTCEEEEETTSSSCCEEECCCCTTCC----CBSCEEEEETTEEEEECCEEECTTSC
T ss_pred             CCEEEEEeCcC-------------CCeEEEEccccCCCCeeECCCCCCCc----CccceEEEECCEEEEEcCCCCCCCcc
Confidence            67889999863             2378999998  49999999988 54    4567888999999999998 2  112


Q ss_pred             CCCcceeEEEECCCCcEEeCCCCC-CCceeeeeEEECCEEEEEcCcCCCC------------------------------
Q 018336          151 YSPVSHVFVYDFTTRRWTRGKNMP-DNRSFFAAGELNGRVIIAGGHDENK------------------------------  199 (358)
Q Consensus       151 ~~~~~~~~~yd~~t~~W~~~~~~~-~~~~~~~~~~~~~~iyv~GG~~~~~------------------------------  199 (358)
                      ...++++++||+.+++|+.+++++ .+|..|+++.++++||++||.+...                              
T Consensus        82 ~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (357)
T 2uvk_A           82 TQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA  161 (357)
T ss_dssp             EEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred             ceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence            235789999999999999999988 8899999999999999999976421                              


Q ss_pred             ---CCCCeEEEEECCCCceEecCCCccCcCc-eeEEEECCEEEEEeCcccCCCCceeeeeEEEEC--CCCceEEcCCccc
Q 018336          200 ---TALSSAWAYDLIKDEWTELARMTQERDE-CEAVVIGSEFWVVSGYKTERQGIFDESAESYQL--GTGEWKRAENAWK  273 (358)
Q Consensus       200 ---~~~~~~~~yd~~t~~W~~~~~~p~~~~~-~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~--~~~~W~~~~~~p~  273 (358)
                         ..++++++||+.+++|+.++++|.++.. +++++++++||++||.....  .....+++||+  .+++|+.+..+|.
T Consensus       162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~~d~d~~~~~W~~~~~~~~  239 (357)
T 2uvk_A          162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPG--LRTDAVFELDFTGNNLKWNKLAPVSS  239 (357)
T ss_dssp             GGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETT--EECCCEEEEECC---CEEEECCCSST
T ss_pred             cccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCC--cccCceEEEEecCCCCcEEecCCCCC
Confidence               1357999999999999999999986555 88899999999999986432  34678889987  8999999998754


Q ss_pred             cCCCCCcee----------------------------------------eeeecCccCceeccccc--eeeceEEEEeCC
Q 018336          274 LSQCPRSNV----------------------------------------GVGREGKLFCWAETEAA--VQFGTCRVELGG  311 (358)
Q Consensus       274 ~~~~~~~~~----------------------------------------~~~~d~~~~~W~~lp~~--~r~~~~~~~~~~  311 (358)
                      +  ..+..+                                        ..+||+++++|..++..  .|..++++.+++
T Consensus       240 ~--~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~  317 (357)
T 2uvk_A          240 P--DGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNN  317 (357)
T ss_dssp             T--TCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETT
T ss_pred             C--cccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCC
Confidence            3  222211                                        11588899999666543  467788899999


Q ss_pred             eEEEECCCCCCCC--ceEEEEECCCCceEee-cCCC
Q 018336          312 CTLVTGSGYQGGP--QEFYVVEGRNGKFRKF-DVPA  344 (358)
Q Consensus       312 ~i~v~gG~~~~~~--~~i~~yd~~~~~W~~~-~~p~  344 (358)
                      +|||+||.+..+.  +++++|+.++++|.+. ++|.
T Consensus       318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~  353 (357)
T 2uvk_A          318 SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHH  353 (357)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC----
T ss_pred             EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccc
Confidence            9999999876543  8999999999999998 5553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=2.8e-33  Score=247.82  Aligned_cols=215  Identities=17%  Similarity=0.224  Sum_probs=176.9

Q ss_pred             CceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcC---CCCCCCCe
Q 018336          128 PLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHD---ENKTALSS  204 (358)
Q Consensus       128 ~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~---~~~~~~~~  204 (358)
                      +..++++.+++.||++||..   ....+++++||+.+++|+.++++|.+|..|+++.++++||++||..   ......++
T Consensus        15 ~~~~~~~~~~~~i~v~GG~~---~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~   91 (308)
T 1zgk_A           15 PRGSHAPKVGRLIYTAGGYF---RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSA   91 (308)
T ss_dssp             ------CCCCCCEEEECCBS---SSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCC
T ss_pred             eCCccccCCCCEEEEEeCcC---CCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecce
Confidence            34557778899999999983   2357899999999999999999999999999999999999999984   22345788


Q ss_pred             EEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee
Q 018336          205 AWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV  284 (358)
Q Consensus       205 ~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~  284 (358)
                      +++||+.+++|+.++++|.+|..+++++++++||++||....   ...+++++||+.+++|+.++.+|... ..++.+..
T Consensus        92 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~  167 (308)
T 1zgk_A           92 LDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC---IHHNSVERYEPERDEWHLVAPMLTRR-IGVGVAVL  167 (308)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETT---EECCCEEEEETTTTEEEECCCCSSCC-BSCEEEEE
T ss_pred             EEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCC---cccccEEEECCCCCeEeECCCCCccc-cceEEEEE
Confidence            999999999999999999999999999999999999998653   24678999999999999999876421 22222221


Q ss_pred             --------------------eecCccCceeccccc--eeeceEEEEeCCeEEEECCCCCCCC-ceEEEEECCCCceEee-
Q 018336          285 --------------------GREGKLFCWAETEAA--VQFGTCRVELGGCTLVTGSGYQGGP-QEFYVVEGRNGKFRKF-  340 (358)
Q Consensus       285 --------------------~~d~~~~~W~~lp~~--~r~~~~~~~~~~~i~v~gG~~~~~~-~~i~~yd~~~~~W~~~-  340 (358)
                                          .||+++++|..+++.  .|..++++.++++|||+||...... +++++||+++++|+++ 
T Consensus       168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  247 (308)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence                                799999999777654  4788889999999999999875543 8999999999999999 


Q ss_pred             cCCCCccCc
Q 018336          341 DVPAEYKGL  349 (358)
Q Consensus       341 ~~p~~~~~~  349 (358)
                      ++|.++..+
T Consensus       248 ~~p~~r~~~  256 (308)
T 1zgk_A          248 PMKHRRSAL  256 (308)
T ss_dssp             CCSSCCBSC
T ss_pred             CCCCCccce
Confidence            788777666

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=3.7e-33  Score=247.88  Aligned_cols=261  Identities=17%  Similarity=0.174  Sum_probs=200.7

Q ss_pred             hhhHHhhcHhHHHhhcChhh-HHHHHhcCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCC
Q 018336           47 HRVATRVSRRWRQLIQSRDF-YYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPA  125 (358)
Q Consensus        47 ~~~~~~v~k~w~~l~~s~~f-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~  125 (358)
                      +..+....++|.. ...|.. .+........+..+|++||.......   .......+++.||+.+++|..++++|.++ 
T Consensus        15 ~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-   89 (315)
T 4asc_A           15 AVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDN---KEDPMSAYFLQFDHLDSEWLGMPPLPSPR-   89 (315)
T ss_dssp             EEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSC---SSSCEEEEEEEEETTTTEEEECCCBSSCE-
T ss_pred             eEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCC---CccccccceEEecCCCCeEEECCCCCcch-
Confidence            3445555667753 322211 11112223346778898885321100   00113456999999999999999998764 


Q ss_pred             CCCceeEEEEECCEEEEEcCcCC-CCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCe
Q 018336          126 GLPLFCQVASSQGKLVVMGGWDP-ASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSS  204 (358)
Q Consensus       126 ~~~~~~~~~~~~~~lyv~Gg~~~-~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~  204 (358)
                         ..++++.++++||++||... ......+++++||+.+++|+.++++|.+|..|+++.++++||++||.+......++
T Consensus        90 ---~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  166 (315)
T 4asc_A           90 ---CLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNK  166 (315)
T ss_dssp             ---ESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCC
T ss_pred             ---hceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccce
Confidence               45688889999999999752 12245789999999999999999999999999999999999999999655567899


Q ss_pred             EEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee
Q 018336          205 AWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV  284 (358)
Q Consensus       205 ~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~  284 (358)
                      +++||+.+++|+.++++|.+|..+++++++++||++||.....   ..+++++||+.+++|+.++.+|.+. ..++.+..
T Consensus       167 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~  242 (315)
T 4asc_A          167 MCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTG---LTSSAEVYSITDNKWAPFEAFPQER-SSLSLVSL  242 (315)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSS---EEEEEEEEETTTTEEEEECCCSSCC-BSCEEEEE
T ss_pred             EEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCC---ccceEEEEECCCCeEEECCCCCCcc-cceeEEEE
Confidence            9999999999999999999999999999999999999986543   5789999999999999999876421 11111111


Q ss_pred             -----------------------------eecCccCceeccccceeeceEEEEeCCeEEEECCC
Q 018336          285 -----------------------------GREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSG  319 (358)
Q Consensus       285 -----------------------------~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~  319 (358)
                                                   .||+++++|..+++.+|..++++.++++||++...
T Consensus       243 ~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~r~~~~~~~~~~~l~v~~~~  306 (315)
T 4asc_A          243 VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREIAYAAGATFLPVRLNVLRLT  306 (315)
T ss_dssp             TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEESCSSCCSSCEEEEEEECGGGSE
T ss_pred             CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhccCCcCccceEEeCCEEEEEEeh
Confidence                                         58999999998887789999999999999998653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=3e-32  Score=240.53  Aligned_cols=210  Identities=20%  Similarity=0.297  Sum_probs=174.2

Q ss_pred             EEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336          132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLI  211 (358)
Q Consensus       132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~  211 (358)
                      ..+..++.||++||.+..   ..+++++||+.+++|..++++|.+|..|+++.++++||++||.+.. ...+++++||+.
T Consensus        10 ~~~~~~~~i~v~GG~~~~---~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~d~~   85 (302)
T 2xn4_A           10 TPMNLPKLMVVVGGQAPK---AIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGS-LRVRTVDSYDPV   85 (302)
T ss_dssp             -----CEEEEEECCBSSS---BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSS-SBCCCEEEEETT
T ss_pred             cccCCCCEEEEECCCCCC---CCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCC-ccccceEEECCC
Confidence            345568899999997642   4678999999999999999999999999999999999999998754 457899999999


Q ss_pred             CCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee-------
Q 018336          212 KDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV-------  284 (358)
Q Consensus       212 t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-------  284 (358)
                      +++|+.++++|.+|..+++++++++||++||....   ...+++++||+.+++|+.++.+|.+. ..++.+..       
T Consensus        86 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~  161 (302)
T 2xn4_A           86 KDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS---TGLSSVEAYNIKSNEWFHVAPMNTRR-SSVGVGVVGGLLYAV  161 (302)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSS---CEEEEEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEE
T ss_pred             CCceeeCCCCCccccceEEEEECCEEEEEcCCCCC---ccCceEEEEeCCCCeEeecCCCCCcc-cCceEEEECCEEEEE
Confidence            99999999999999999999999999999998643   24789999999999999999886421 22221111       


Q ss_pred             ---------------eecCccCceeccccc--eeeceEEEEeCCeEEEECCCCCCCC-ceEEEEECCCCceEee-cCCCC
Q 018336          285 ---------------GREGKLFCWAETEAA--VQFGTCRVELGGCTLVTGSGYQGGP-QEFYVVEGRNGKFRKF-DVPAE  345 (358)
Q Consensus       285 ---------------~~d~~~~~W~~lp~~--~r~~~~~~~~~~~i~v~gG~~~~~~-~~i~~yd~~~~~W~~~-~~p~~  345 (358)
                                     .||+++++|..+++.  .|..++++.++++|||+||...... +++++||+++++|+.+ .+|.+
T Consensus       162 GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~  241 (302)
T 2xn4_A          162 GGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC  241 (302)
T ss_dssp             CCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred             eCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc
Confidence                           799999999776544  4688899999999999999865443 7999999999999999 78877


Q ss_pred             ccCc
Q 018336          346 YKGL  349 (358)
Q Consensus       346 ~~~~  349 (358)
                      +..+
T Consensus       242 r~~~  245 (302)
T 2xn4_A          242 RRNA  245 (302)
T ss_dssp             CBSC
T ss_pred             cccC
Confidence            7655

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=1.4e-32  Score=244.48  Aligned_cols=260  Identities=18%  Similarity=0.236  Sum_probs=198.4

Q ss_pred             hhhHHhhcHhHHHhhcChh-hHHHHHhcCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCC
Q 018336           47 HRVATRVSRRWRQLIQSRD-FYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPA  125 (358)
Q Consensus        47 ~~~~~~v~k~w~~l~~s~~-f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~  125 (358)
                      ...+....++|... ..+. ..+........+..+|++||......   .........++.||+.+++|..++++|.++ 
T Consensus        26 ~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~---~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-  100 (318)
T 2woz_A           26 AVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEE---NKDQPLQSYFFQLDNVSSEWVGLPPLPSAR-  100 (318)
T ss_dssp             EEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC----------CCCBEEEEEETTTTEEEECSCBSSCB-
T ss_pred             eEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCcccCcc---ccCCCccccEEEEeCCCCcEEECCCCCccc-
Confidence            34455666778652 2111 11111222335678889998532110   000012345899999999999999998865 


Q ss_pred             CCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeE
Q 018336          126 GLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSA  205 (358)
Q Consensus       126 ~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~  205 (358)
                         ..+++++++++||++||.........+++++||+.+++|+.++++|.+|..|+++.++++||++||........+++
T Consensus       101 ---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  177 (318)
T 2woz_A          101 ---CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRV  177 (318)
T ss_dssp             ---CSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCE
T ss_pred             ---cccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceE
Confidence               35688889999999999864333457899999999999999999999999999999999999999986655668899


Q ss_pred             EEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee-
Q 018336          206 WAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV-  284 (358)
Q Consensus       206 ~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-  284 (358)
                      ++||+.+++|+.++++|.+|..+++++++++||++||.....   ..+.+++||+.+++|+.+..+|.+. ..++.+.. 
T Consensus       178 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~  253 (318)
T 2woz_A          178 FIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG---LSASVEAFDLKTNKWEVMTEFPQER-SSISLVSLA  253 (318)
T ss_dssp             EEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTE---EEEEEEEEETTTCCEEECCCCSSCC-BSCEEEEET
T ss_pred             EEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCC---ccceEEEEECCCCeEEECCCCCCcc-cceEEEEEC
Confidence            999999999999999999999999999999999999987542   5789999999999999999887421 11111111 


Q ss_pred             ----------------------------eecCccCceeccccceeeceEEEEeCCeEEEECC
Q 018336          285 ----------------------------GREGKLFCWAETEAAVQFGTCRVELGGCTLVTGS  318 (358)
Q Consensus       285 ----------------------------~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG  318 (358)
                                                  .||+++++|..+.+..|+.++++.++++|||+..
T Consensus       254 ~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~r~~~~~~~~~~~iyi~~~  315 (318)
T 2woz_A          254 GSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRLNLFKL  315 (318)
T ss_dssp             TEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEEESCCGGGTTCEEEEEEEEGGGC
T ss_pred             CEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhhcccccccccceeeCCEEEEEEe
Confidence                                        5899999998886667888889999999999753

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=5.4e-32  Score=239.33  Aligned_cols=203  Identities=14%  Similarity=0.144  Sum_probs=173.2

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceE
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWT  216 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  216 (358)
                      .+.||++||...     .+++++||+.+++|+.++++|.+|..|+++.+++.||++||.+  ....+++++||+.+++|+
T Consensus        11 ~~~l~~~GG~~~-----~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~   83 (306)
T 3ii7_A           11 HDYRIALFGGSQ-----PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWY   83 (306)
T ss_dssp             CCEEEEEECCSS-----TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEE
T ss_pred             cceEEEEeCCCC-----CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEE
Confidence            578999999754     6789999999999999999999999999999999999999988  456789999999999999


Q ss_pred             ecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee------------
Q 018336          217 ELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV------------  284 (358)
Q Consensus       217 ~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~------------  284 (358)
                      .++++|.+|..+++++++++||++||....  ....+++++||+.+++|+.++.+|.+. ..++.+..            
T Consensus        84 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~--~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv~GG~~~  160 (306)
T 3ii7_A           84 SKLGPPTPRDSLAACAAEGKIYTSGGSEVG--NSALYLFECYDTRTESWHTKPSMLTQR-CSHGMVEANGLIYVCGGSLG  160 (306)
T ss_dssp             EEECCSSCCBSCEEEEETTEEEEECCBBTT--BSCCCCEEEEETTTTEEEEECCCSSCC-BSCEEEEETTEEEEECCEES
T ss_pred             ECCCCCccccceeEEEECCEEEEECCCCCC--CcEeeeEEEEeCCCCceEeCCCCcCCc-ceeEEEEECCEEEEECCCCC
Confidence            999999999999999999999999998622  234789999999999999999887431 22222111            


Q ss_pred             ------------eecCccCceeccccc--eeeceEEEEeCCeEEEECCCCCCCC-ceEEEEECCCCceEee-cCCCCccC
Q 018336          285 ------------GREGKLFCWAETEAA--VQFGTCRVELGGCTLVTGSGYQGGP-QEFYVVEGRNGKFRKF-DVPAEYKG  348 (358)
Q Consensus       285 ------------~~d~~~~~W~~lp~~--~r~~~~~~~~~~~i~v~gG~~~~~~-~~i~~yd~~~~~W~~~-~~p~~~~~  348 (358)
                                  .||+++++|..+++.  .|..++++.++++|||+||...... +++++||+.+++|+.+ ++|.++..
T Consensus       161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~  240 (306)
T 3ii7_A          161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT  240 (306)
T ss_dssp             CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred             CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence                        789999999777655  4688899999999999999865433 7899999999999999 88887766


Q ss_pred             c
Q 018336          349 L  349 (358)
Q Consensus       349 ~  349 (358)
                      +
T Consensus       241 ~  241 (306)
T 3ii7_A          241 V  241 (306)
T ss_dssp             C
T ss_pred             e
Confidence            6

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=7.3e-32  Score=243.70  Aligned_cols=224  Identities=14%  Similarity=0.134  Sum_probs=172.6

Q ss_pred             ecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECC--CCcEEeCCCCC-CCceeeeeEEECCEEEEE
Q 018336          116 RLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT--TRRWTRGKNMP-DNRSFFAAGELNGRVIIA  192 (358)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~--t~~W~~~~~~~-~~~~~~~~~~~~~~iyv~  192 (358)
                      .++++|.++.    .++++.++++||++||..      .+++++||+.  +++|+.++++| .+|..|++++++++||++
T Consensus         2 ~l~~lP~~r~----~~~~~~~~~~iyv~GG~~------~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~   71 (357)
T 2uvk_A            2 VLPETPVPFK----SGTGAIDNDTVYIGLGSA------GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVF   71 (357)
T ss_dssp             CSCCCSSCCC----SCEEEEETTEEEEECGGG------TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEE
T ss_pred             CCCCCCcccc----ceEEEEECCEEEEEeCcC------CCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEE
Confidence            4677787653    456777799999999975      3479999998  49999999999 899999999999999999


Q ss_pred             cCc-C---CCCCCCCeEEEEECCCCceEecCCCc-cCcCceeEEEECCEEEEEeCcccCCC-------------------
Q 018336          193 GGH-D---ENKTALSSAWAYDLIKDEWTELARMT-QERDECEAVVIGSEFWVVSGYKTERQ-------------------  248 (358)
Q Consensus       193 GG~-~---~~~~~~~~~~~yd~~t~~W~~~~~~p-~~~~~~~~~~~~~~lyv~gG~~~~~~-------------------  248 (358)
                      ||. .   .....++++++||+.+++|+.+++++ .+|..+++++++++||++||......                   
T Consensus        72 GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~  151 (357)
T 2uvk_A           72 GGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDK  151 (357)
T ss_dssp             CCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhh
Confidence            998 2   12345789999999999999999888 89999999999999999999753210                   


Q ss_pred             ------------CceeeeeEEEECCCCceEEcCCccccCCCCCceeee---------------------eecC--ccCce
Q 018336          249 ------------GIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV---------------------GREG--KLFCW  293 (358)
Q Consensus       249 ------------~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~---------------------~~d~--~~~~W  293 (358)
                                  ....+.+++||+.+++|+.+..+|.......+.+..                     .||.  ++++|
T Consensus       152 ~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W  231 (357)
T 2uvk_A          152 INAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKW  231 (357)
T ss_dssp             HHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEE
T ss_pred             hhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcE
Confidence                        013578999999999999998876432221222222                     4654  99999


Q ss_pred             eccccc----eeeceEEEEeCCeEEEECCCCCCC-----------------C-ceEEEEECCCCceEee-cCCCCccCc
Q 018336          294 AETEAA----VQFGTCRVELGGCTLVTGSGYQGG-----------------P-QEFYVVEGRNGKFRKF-DVPAEYKGL  349 (358)
Q Consensus       294 ~~lp~~----~r~~~~~~~~~~~i~v~gG~~~~~-----------------~-~~i~~yd~~~~~W~~~-~~p~~~~~~  349 (358)
                      ..++..    .+..++++.++++|||+||.....                 . .++++||+++++|+++ .+|.++..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~  310 (357)
T 2uvk_A          232 NKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYG  310 (357)
T ss_dssp             EECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSS
T ss_pred             EecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccc
Confidence            766543    246788999999999999974321                 1 5789999999999999 889887776

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.6e-31  Score=234.36  Aligned_cols=208  Identities=21%  Similarity=0.292  Sum_probs=174.9

Q ss_pred             EECCEEEEEcC-cCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          135 SSQGKLVVMGG-WDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       135 ~~~~~lyv~Gg-~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                      ..++.||++|| ....  ...+++++||+.+++|..++++|.+|..|+++.++++||++||.... ...+++++||+.++
T Consensus        12 ~~~~~i~~~GG~~~~~--~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~d~~~~   88 (301)
T 2vpj_A           12 GANEVLLVVGGFGSQQ--SPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGR-SRLSSVECLDYTAD   88 (301)
T ss_dssp             -CCEEEEEECCEETTT--EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS-CBCCCEEEEETTCC
T ss_pred             cCCCEEEEEeCccCCC--cceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCC-ccCceEEEEECCCC
Confidence            36889999999 4432  34789999999999999999999999999999999999999998743 45789999999999


Q ss_pred             c---eEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee------
Q 018336          214 E---WTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV------  284 (358)
Q Consensus       214 ~---W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~------  284 (358)
                      +   |+.++++|.+|..+++++++++||++||.....   ..+++++||+.+++|+.++.+|... ..++.+..      
T Consensus        89 ~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~---~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~~~~iyv  164 (301)
T 2vpj_A           89 EDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR---RHTSMERYDPNIDQWSMLGDMQTAR-EGAGLVVASGVIYC  164 (301)
T ss_dssp             TTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSC---BCCEEEEEETTTTEEEEEEECSSCC-BSCEEEEETTEEEE
T ss_pred             CCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCc---ccceEEEEcCCCCeEEECCCCCCCc-ccceEEEECCEEEE
Confidence            9   999999999999999999999999999987443   3678999999999999998876421 22222211      


Q ss_pred             --------------eecCccCceeccccc--eeeceEEEEeCCeEEEECCCCCCCC-ceEEEEECCCCceEee-cCCCCc
Q 018336          285 --------------GREGKLFCWAETEAA--VQFGTCRVELGGCTLVTGSGYQGGP-QEFYVVEGRNGKFRKF-DVPAEY  346 (358)
Q Consensus       285 --------------~~d~~~~~W~~lp~~--~r~~~~~~~~~~~i~v~gG~~~~~~-~~i~~yd~~~~~W~~~-~~p~~~  346 (358)
                                    .||+++++|..+++.  .|..++++..+++|||+||...... +++++||+++++|+.+ .+|.++
T Consensus       165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r  244 (301)
T 2vpj_A          165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR  244 (301)
T ss_dssp             ECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred             ECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcc
Confidence                          799999999777644  4678889999999999999876543 8999999999999999 788877


Q ss_pred             cCc
Q 018336          347 KGL  349 (358)
Q Consensus       347 ~~~  349 (358)
                      ..+
T Consensus       245 ~~~  247 (301)
T 2vpj_A          245 CYV  247 (301)
T ss_dssp             BSC
T ss_pred             cce
Confidence            666

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.98  E-value=5e-31  Score=256.93  Aligned_cols=224  Identities=13%  Similarity=0.191  Sum_probs=183.2

Q ss_pred             ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecC-C-----CCCCCCCCCceeEEEEE--CCEEEEEcCcC
Q 018336           76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLG-P-----VPEYPAGLPLFCQVASS--QGKLVVMGGWD  147 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~-----~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~  147 (358)
                      .+..+|++||... .         ...++++||+.+++|..++ +     +|.+    +.+|+++++  +++||++||..
T Consensus       396 ~~~~iyv~GG~~~-~---------~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~----R~~hs~~~~~~~~~lyv~GG~~  461 (695)
T 2zwa_A          396 AGNDVFYMGGSNP-Y---------RVNEILQLSIHYDKIDMKNIEVSSSEVPVA----RMCHTFTTISRNNQLLLIGGRK  461 (695)
T ss_dssp             CSSCEEEECCBSS-S---------BCCCEEEEEECSSCEEEEECCCCCSCCCCC----CBSCEEEEETTTTEEEEECCBS
T ss_pred             ECCEEEEECCCCC-C---------CcCcEEEEECCCCeEEEeccCCCCCCCCcc----ccceEEEEEccCCEEEEEcCCC
Confidence            3567888888643 1         3467999999999999998 6     3443    457788999  99999999986


Q ss_pred             CCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCC---Ccc
Q 018336          148 PASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELAR---MTQ  223 (358)
Q Consensus       148 ~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~---~p~  223 (358)
                      ... ..++++|+||+.+++|+.++++|.+|..|+++.+ +++||++||.+...    ++++||+.+++|+.+++   +|.
T Consensus       462 ~~~-~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~  536 (695)
T 2zwa_A          462 APH-QGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQ  536 (695)
T ss_dssp             STT-CBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGG
T ss_pred             CCC-CccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCC
Confidence            543 2578999999999999999999999999999996 99999999987653    89999999999999986   899


Q ss_pred             CcCceeEEEEC---CEEEEEeCcccCCCCceeeeeEEEECCCCc------eEEcCCccccCCCCCceeeeeecCccCcee
Q 018336          224 ERDECEAVVIG---SEFWVVSGYKTERQGIFDESAESYQLGTGE------WKRAENAWKLSQCPRSNVGVGREGKLFCWA  294 (358)
Q Consensus       224 ~~~~~~~~~~~---~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~------W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~  294 (358)
                      +|..+++++++   ++||++||..... ....+++++||+.+++      |+.+..+|.                     
T Consensus       537 ~r~~~~a~v~~~~~~~iyv~GG~~~~~-~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~---------------------  594 (695)
T 2zwa_A          537 NSLVSAGLEFDPVSKQGIILGGGFMDQ-TTVSDKAIIFKYDAENATEPITVIKKLQHPL---------------------  594 (695)
T ss_dssp             SCCBSCEEEEETTTTEEEEECCBCTTS-SCBCCEEEEEEECTTCSSCCEEEEEEEECGG---------------------
T ss_pred             cccceeEEEEeCCCCEEEEECCcCCCC-CeeeCcEEEEEccCCccccceEEEEcCCCCC---------------------
Confidence            99999988877   8999999985432 1357899999999999      666655421                     


Q ss_pred             ccccceeeceEEEEeC-CeEEEECCCCCCC----CceEEEEECCCCceEeecCCC
Q 018336          295 ETEAAVQFGTCRVELG-GCTLVTGSGYQGG----PQEFYVVEGRNGKFRKFDVPA  344 (358)
Q Consensus       295 ~lp~~~r~~~~~~~~~-~~i~v~gG~~~~~----~~~i~~yd~~~~~W~~~~~p~  344 (358)
                          ..|..++++.++ ++|||+||.....    .+++++||+.+++|+.+.+|.
T Consensus       595 ----~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~  645 (695)
T 2zwa_A          595 ----FQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISR  645 (695)
T ss_dssp             ----GCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCCH
T ss_pred             ----CCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeeccc
Confidence                125566778888 9999999986443    289999999999999876554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.96  E-value=1.1e-27  Score=233.38  Aligned_cols=186  Identities=16%  Similarity=0.310  Sum_probs=154.2

Q ss_pred             ceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCC-C-----CCCCceeeeeEEE--CCEEEEEcCcCCCCC
Q 018336          129 LFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGK-N-----MPDNRSFFAAGEL--NGRVIIAGGHDENKT  200 (358)
Q Consensus       129 ~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~-~-----~~~~~~~~~~~~~--~~~iyv~GG~~~~~~  200 (358)
                      .++++++.++.||++||...   ...+++++||+.+++|+.++ +     +|.+|..|+++++  +++||++||.+....
T Consensus       389 r~g~~~~~~~~iyv~GG~~~---~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~  465 (695)
T 2zwa_A          389 KFGDVDVAGNDVFYMGGSNP---YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQ  465 (695)
T ss_dssp             BSCEEEECSSCEEEECCBSS---SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTC
T ss_pred             ceeEEEEECCEEEEECCCCC---CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCC
Confidence            34456668999999999865   35789999999999999987 5     7899999999999  999999999987655


Q ss_pred             CCCeEEEEECCCCceEecCCCccCcCceeEEEE-CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCC---ccccCC
Q 018336          201 ALSSAWAYDLIKDEWTELARMTQERDECEAVVI-GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAEN---AWKLSQ  276 (358)
Q Consensus       201 ~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~---~p~~~~  276 (358)
                      .++++++||+.+++|+.++++|.+|..|+++++ +++|||+||.....      ++++||+.+++|+.+..   +|    
T Consensus       466 ~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~------~v~~yd~~t~~W~~~~~~g~~p----  535 (695)
T 2zwa_A          466 GLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP------AMLLYNVTEEIFKDVTPKDEFF----  535 (695)
T ss_dssp             BCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC------SEEEEETTTTEEEECCCSSGGG----
T ss_pred             ccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC------CEEEEECCCCceEEccCCCCCC----
Confidence            688999999999999999999999999999996 99999999986442      89999999999999986   33    


Q ss_pred             CCCceeeeeecCccCceeccccceeeceEEEEeC---CeEEEECCCCCCC---CceEEEEECCCCc------eEee-cCC
Q 018336          277 CPRSNVGVGREGKLFCWAETEAAVQFGTCRVELG---GCTLVTGSGYQGG---PQEFYVVEGRNGK------FRKF-DVP  343 (358)
Q Consensus       277 ~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~---~~i~v~gG~~~~~---~~~i~~yd~~~~~------W~~~-~~p  343 (358)
                      .+                      |..+++++++   ++|||+||...++   .+++++||+.+++      |+.+ ..|
T Consensus       536 ~~----------------------r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p  593 (695)
T 2zwa_A          536 QN----------------------SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP  593 (695)
T ss_dssp             GS----------------------CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG
T ss_pred             Cc----------------------ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC
Confidence            22                      3333444545   8999999986543   2899999999999      8988 543


Q ss_pred             -CCccCc
Q 018336          344 -AEYKGL  349 (358)
Q Consensus       344 -~~~~~~  349 (358)
                       .++.++
T Consensus       594 ~~~R~~~  600 (695)
T 2zwa_A          594 LFQRYGS  600 (695)
T ss_dssp             GGCCBSC
T ss_pred             CCCcccc
Confidence             445444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.95  E-value=4.3e-27  Score=228.80  Aligned_cols=288  Identities=15%  Similarity=0.100  Sum_probs=178.6

Q ss_pred             HHhhcHhHHHhhcChhhHHHHHhcCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCc
Q 018336           50 ATRVSRRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPL  129 (358)
Q Consensus        50 ~~~v~k~w~~l~~s~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~  129 (358)
                      +.....+|..+...|.... ...+...+..+|++|+........   .......+++||+.+++|..++.++.++..  .
T Consensus       171 ~dp~~~~W~~~~~~P~~~~-~~av~~~~g~l~v~GG~~~~~~~~---~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~--~  244 (656)
T 1k3i_A          171 PQPGLGRWGPTIDLPIVPA-AAAIEPTSGRVLMWSSYRNDAFGG---SPGGITLTSSWDPSTGIVSDRTVTVTKHDM--F  244 (656)
T ss_dssp             CCTTSCEEEEEEECSSCCS-EEEEETTTTEEEEEEECCCTTTCS---CCCSEEEEEEECTTTCCBCCCEEEECSCCC--S
T ss_pred             CCCCCCeeeeeccCCCCce-eEEEEecCCEEEEEeccccccccc---CCCCeEEEEEEeCCCCcEEeCcccCCCCCC--c
Confidence            3445567776666655111 011111166788888864321100   001234789999999999999888776542  2


Q ss_pred             eeEEE-EECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEE
Q 018336          130 FCQVA-SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWA  207 (358)
Q Consensus       130 ~~~~~-~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~  207 (358)
                      .++++ ..+++||++||...      .++++||+.+++|..+++|+.+|..|+++++ +++||++||.........++++
T Consensus       245 ~~~~~~~~~g~lyv~GG~~~------~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~  318 (656)
T 1k3i_A          245 CPGISMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV  318 (656)
T ss_dssp             SCEEEECTTSCEEEECSSST------TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred             cccccCCCCCCEEEeCCCCC------CceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceE
Confidence            22333 45899999999753      3799999999999999999999999999999 9999999996444456789999


Q ss_pred             EECCCCceEecC-----CCccCcCceeEEEECCEEEEEeCcccCCC-CceeeeeEEEECCCCc-----------------
Q 018336          208 YDLIKDEWTELA-----RMTQERDECEAVVIGSEFWVVSGYKTERQ-GIFDESAESYQLGTGE-----------------  264 (358)
Q Consensus       208 yd~~t~~W~~~~-----~~p~~~~~~~~~~~~~~lyv~gG~~~~~~-~~~~~~i~~yd~~~~~-----------------  264 (358)
                      ||+.+++|+.++     +++..+.. .++..++++|++||.++... ......++.||+.+++                 
T Consensus       319 yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~  397 (656)
T 1k3i_A          319 YSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD  397 (656)
T ss_dssp             EETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCC
T ss_pred             eCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCC
Confidence            999999999973     44444322 23334555555555432110 0012344444443221                 


Q ss_pred             ----eEEc----CC-ccc-cCC-------CCCce-eeeeecCccCceeccc--c--ceeeceEEEEe-CCeEEEECCCCC
Q 018336          265 ----WKRA----EN-AWK-LSQ-------CPRSN-VGVGREGKLFCWAETE--A--AVQFGTCRVEL-GGCTLVTGSGYQ  321 (358)
Q Consensus       265 ----W~~~----~~-~p~-~~~-------~~~~~-~~~~~d~~~~~W~~lp--~--~~r~~~~~~~~-~~~i~v~gG~~~  321 (358)
                          ...+    .. +-. .+.       ....+ ...+||++++.|..+.  .  ..|..++++.+ +++|||+||...
T Consensus       398 ~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~  477 (656)
T 1k3i_A          398 AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRR  477 (656)
T ss_dssp             CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSB
T ss_pred             CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCccc
Confidence                1110    00 000 000       00000 1114555555553332  1  13555666666 999999999763


Q ss_pred             CC-------CceEEEEECCCCceEee-cCCCCccCce
Q 018336          322 GG-------PQEFYVVEGRNGKFRKF-DVPAEYKGLV  350 (358)
Q Consensus       322 ~~-------~~~i~~yd~~~~~W~~~-~~p~~~~~~~  350 (358)
                      ..       ..++++||+++++|+.+ ++|.++..|.
T Consensus       478 ~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs  514 (656)
T 1k3i_A          478 GIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHS  514 (656)
T ss_dssp             CCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTE
T ss_pred             CcCcCCCCcccceEEEcCCCCceeecCCCCCcccccc
Confidence            21       17899999999999999 7888888773

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.94  E-value=2.8e-26  Score=223.16  Aligned_cols=234  Identities=14%  Similarity=0.151  Sum_probs=170.4

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCCC----CCcceeEEEECCCCcEEeCCCCCCC
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPASY----SPVSHVFVYDFTTRRWTRGKNMPDN  176 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~~----~~~~~~~~yd~~t~~W~~~~~~~~~  176 (358)
                      .+.+|||.+++|..++++|..      .++++..  +++||++||......    .....+++||+.+++|+.++.+|.+
T Consensus       167 ~~~~~dp~~~~W~~~~~~P~~------~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~  240 (656)
T 1k3i_A          167 SYTAPQPGLGRWGPTIDLPIV------PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK  240 (656)
T ss_dssp             CCCCCCTTSCEEEEEEECSSC------CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS
T ss_pred             ccccCCCCCCeeeeeccCCCC------ceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCC
Confidence            466789999999999888762      2244545  999999999754321    1345899999999999999998888


Q ss_pred             ceeee--eEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE-CCEEEEEeCcccCCCCcee
Q 018336          177 RSFFA--AGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI-GSEFWVVSGYKTERQGIFD  252 (358)
Q Consensus       177 ~~~~~--~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~  252 (358)
                      |..++  ++. .+++||++||....     ++++||+.+++|+++++||.+|..++++++ +|+||++||.....  ...
T Consensus       241 ~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~--~~~  313 (656)
T 1k3i_A          241 HDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGG--VFE  313 (656)
T ss_dssp             CCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSS--SCC
T ss_pred             CCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCC--ccc
Confidence            86654  333 58999999997643     699999999999999999999999999998 99999999953221  246


Q ss_pred             eeeEEEECCCCceEEcCC-----ccccCC------CCCc----------------eeeeeecCccCceec-cccce----
Q 018336          253 ESAESYQLGTGEWKRAEN-----AWKLSQ------CPRS----------------NVGVGREGKLFCWAE-TEAAV----  300 (358)
Q Consensus       253 ~~i~~yd~~~~~W~~~~~-----~p~~~~------~~~~----------------~~~~~~d~~~~~W~~-lp~~~----  300 (358)
                      .++++||+.+++|+.++.     ++....      ..+.                .....||++++.|.. +....    
T Consensus       314 ~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~  393 (656)
T 1k3i_A          314 KNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG  393 (656)
T ss_dssp             CCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE
T ss_pred             ccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccc
Confidence            789999999999999742     321100      0000                011168999999833 22111    


Q ss_pred             ----eeceEEE---EeCCeEEEECCCCCCC----Cc---eEEEEECCCCceEee---cCCCCccCc
Q 018336          301 ----QFGTCRV---ELGGCTLVTGSGYQGG----PQ---EFYVVEGRNGKFRKF---DVPAEYKGL  349 (358)
Q Consensus       301 ----r~~~~~~---~~~~~i~v~gG~~~~~----~~---~i~~yd~~~~~W~~~---~~p~~~~~~  349 (358)
                          +..++++   ..+++|||+||.....    .+   .+++||+.+++|.++   .+|.++..+
T Consensus       394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~  459 (656)
T 1k3i_A          394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH  459 (656)
T ss_dssp             ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC
T ss_pred             cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccC
Confidence                1223333   3589999999974311    13   789999999999987   567666555

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.92  E-value=9.5e-10  Score=68.97  Aligned_cols=45  Identities=22%  Similarity=0.397  Sum_probs=39.4

Q ss_pred             CCCCCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHH
Q 018336           24 GELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYY   68 (358)
Q Consensus        24 ~~~~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~   68 (358)
                      ...|..||+|++.+||++||..++.++++|||+|+.++.++.+.+
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~   50 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            456889999999999999999999999999999999999988754

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.91  E-value=8.1e-10  Score=94.34  Aligned_cols=50  Identities=24%  Similarity=0.413  Sum_probs=45.5

Q ss_pred             CCCCCCCcHHHHHHHhccCCcchhh-hHHhhcHhHHHhhcChhhHHHHHhc
Q 018336           24 GELVPGLPEEISLECLTRLHYSTHR-VATRVSRRWRQLIQSRDFYYQRKQS   73 (358)
Q Consensus        24 ~~~~~~Lp~d~~~~il~rlp~~~~~-~~~~v~k~w~~l~~s~~f~~~~~~~   73 (358)
                      ...+..||+|++++||+|||.++|. ++++|||+|+.|+.++.|.+.+...
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~   98 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQ   98 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhc
Confidence            4478899999999999999999999 9999999999999999998876543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.78  E-value=5.3e-06  Score=76.18  Aligned_cols=45  Identities=24%  Similarity=0.414  Sum_probs=40.7

Q ss_pred             CCCCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHHH
Q 018336           25 ELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQ   69 (358)
Q Consensus        25 ~~~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~~   69 (358)
                      ..+..||+|++.+||+.|+.+++.++..|||+|+.++.++.+.+.
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~   61 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWRE   61 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHH
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhh
Confidence            368899999999999999999999999999999999988876554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.76  E-value=6.6e-07  Score=82.65  Aligned_cols=42  Identities=29%  Similarity=0.561  Sum_probs=38.1

Q ss_pred             CCCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcC-hhhH
Q 018336           26 LVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQS-RDFY   67 (358)
Q Consensus        26 ~~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s-~~f~   67 (358)
                      .|+.||+|++.+||+.||.+++.++..|||+|+.++.+ +.+.
T Consensus        14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w   56 (464)
T 3v7d_B           14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLW   56 (464)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHH
T ss_pred             ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            46779999999999999999999999999999999988 6543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.70  E-value=1.7e-06  Score=79.32  Aligned_cols=43  Identities=19%  Similarity=0.356  Sum_probs=38.2

Q ss_pred             CCCCCcHH----HHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHH
Q 018336           26 LVPGLPEE----ISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYY   68 (358)
Q Consensus        26 ~~~~Lp~d----~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~   68 (358)
                      .++.||+|    ++.+||+.|+..++.++.+|||+|+.++.++.+.+
T Consensus        10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~   56 (435)
T 1p22_A           10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWK   56 (435)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred             hHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            45679999    99999999999999999999999999988776544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.11  E-value=0.00041  Score=57.67  Aligned_cols=158  Identities=15%  Similarity=0.013  Sum_probs=102.2

Q ss_pred             eeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEE
Q 018336          130 FCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYD  209 (358)
Q Consensus       130 ~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd  209 (358)
                      ..++...++.||+..|..+     .+.+.++|+.+++-..--+++......+.+..+++||++...      .+.+++||
T Consensus        23 tqGL~~~~~~LyestG~~g-----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~------~~~v~v~D   91 (243)
T 3mbr_X           23 TEGLFYLRGHLYESTGETG-----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR------NHEGFVYD   91 (243)
T ss_dssp             EEEEEEETTEEEEEECCTT-----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEE
T ss_pred             cccEEEECCEEEEECCCCC-----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee------CCEEEEEE
Confidence            4567777899999988643     358999999999876544555555556677789999998432      36799999


Q ss_pred             CCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceE-EcCCccccCCCCCceeeeeecC
Q 018336          210 LIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWK-RAENAWKLSQCPRSNVGVGREG  288 (358)
Q Consensus       210 ~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~-~~~~~p~~~~~~~~~~~~~~d~  288 (358)
                      +++.+-.  ..++.+..+.+++.-+++||+.-|         .+.+..+|+++.+-. .+..-.. . .+.         
T Consensus        92 ~~tl~~~--~ti~~~~~Gwglt~dg~~L~vSdg---------s~~l~~iDp~t~~~~~~I~V~~~-g-~~~---------  149 (243)
T 3mbr_X           92 LATLTPR--ARFRYPGEGWALTSDDSHLYMSDG---------TAVIRKLDPDTLQQVGSIKVTAG-G-RPL---------  149 (243)
T ss_dssp             TTTTEEE--EEEECSSCCCEEEECSSCEEEECS---------SSEEEEECTTTCCEEEEEECEET-T-EEC---------
T ss_pred             CCcCcEE--EEEeCCCCceEEeeCCCEEEEECC---------CCeEEEEeCCCCeEEEEEEEccC-C-ccc---------
Confidence            9886543  333333345555655667888865         236789999987532 2221100 0 000         


Q ss_pred             ccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          289 KLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       289 ~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                                  +...-+...+++||+---..    +.|.+.|+++++
T Consensus       150 ------------~~lNeLe~~~G~lyanvw~s----~~I~vIDp~tG~  181 (243)
T 3mbr_X          150 ------------DNLNELEWVNGELLANVWLT----SRIARIDPASGK  181 (243)
T ss_dssp             ------------CCEEEEEEETTEEEEEETTT----TEEEEECTTTCB
T ss_pred             ------------ccceeeEEeCCEEEEEECCC----CeEEEEECCCCC
Confidence                        01112344589998654332    689999999988

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.87  E-value=0.00046  Score=57.91  Aligned_cols=159  Identities=5%  Similarity=-0.082  Sum_probs=98.4

Q ss_pred             eEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEEC
Q 018336          131 CQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDL  210 (358)
Q Consensus       131 ~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~  210 (358)
                      .++...++.||+..|..+     .+.+.++|+.|.+-..--+++......+.+..+++||++-..      .+.+.+||+
T Consensus        46 qGL~~~~~~LyestG~~g-----~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~------~~~v~v~D~  114 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNG-----RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK------NGLGFVWNI  114 (262)
T ss_dssp             EEEEEETTEEEEEEEETT-----EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS------SSEEEEEET
T ss_pred             ceEEEECCEEEEECCCCC-----CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee------CCEEEEEEC
Confidence            455556889999988543     357999999998865433444444445567789999999432      357999999


Q ss_pred             CCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceE-EcCCccccCCCCCceeeeeecCc
Q 018336          211 IKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWK-RAENAWKLSQCPRSNVGVGREGK  289 (358)
Q Consensus       211 ~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~-~~~~~p~~~~~~~~~~~~~~d~~  289 (358)
                      ++.+-.  ..++.+..+.+++.-+++||+.-|         .+.+..+|+++.+-. .+..- .   .++..        
T Consensus       115 ~t~~~~--~ti~~~~eG~glt~dg~~L~~SdG---------s~~i~~iDp~T~~v~~~I~V~-~---~g~~~--------  171 (262)
T 3nol_A          115 RNLRQV--RSFNYDGEGWGLTHNDQYLIMSDG---------TPVLRFLDPESLTPVRTITVT-A---HGEEL--------  171 (262)
T ss_dssp             TTCCEE--EEEECSSCCCCEEECSSCEEECCS---------SSEEEEECTTTCSEEEEEECE-E---TTEEC--------
T ss_pred             ccCcEE--EEEECCCCceEEecCCCEEEEECC---------CCeEEEEcCCCCeEEEEEEec-c---CCccc--------
Confidence            886543  223333344455555566888765         236889999987533 22221 0   00000        


Q ss_pred             cCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceE
Q 018336          290 LFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFR  338 (358)
Q Consensus       290 ~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~  338 (358)
                                 ..-.-+...+++||+---..    +.|.+.|+++++=.
T Consensus       172 -----------~~lNELe~~~G~lyan~w~~----~~I~vIDp~tG~V~  205 (262)
T 3nol_A          172 -----------PELNELEWVDGEIFANVWQT----NKIVRIDPETGKVT  205 (262)
T ss_dssp             -----------CCEEEEEEETTEEEEEETTS----SEEEEECTTTCBEE
T ss_pred             -----------cccceeEEECCEEEEEEccC----CeEEEEECCCCcEE
Confidence                       00001233588998654322    68999999998843

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.76  E-value=0.016  Score=50.64  Aligned_cols=191  Identities=10%  Similarity=0.022  Sum_probs=110.9

Q ss_pred             ceEEEEeCCCCCeeecCCC--CCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcE-EeCCCCCCCce
Q 018336          102 YGVTVFDPVSLTWDRLGPV--PEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRW-TRGKNMPDNRS  178 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W-~~~~~~~~~~~  178 (358)
                      ..+..+|+.+++....-..  .....+ .....++..++++|+....       .+.+.++|+.|.+- ..++....|  
T Consensus        17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg-~~~~~i~~~~~~lyv~~~~-------~~~v~viD~~t~~~~~~i~~~~~p--   86 (328)
T 3dsm_A           17 ATLSYYDPATCEVENEVFYRANGFKLG-DVAQSMVIRDGIGWIVVNN-------SHVIFAIDINTFKEVGRITGFTSP--   86 (328)
T ss_dssp             BEEEEEETTTTEEECSHHHHHHSSCCB-SCEEEEEEETTEEEEEEGG-------GTEEEEEETTTCCEEEEEECCSSE--
T ss_pred             ceEEEEECCCCEEhhhhHhhhcCcccC-ccceEEEEECCEEEEEEcC-------CCEEEEEECcccEEEEEcCCCCCC--
Confidence            4789999999887542100  000000 1123566679999999752       35799999998876 335332222  


Q ss_pred             eeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCcc----CcCceeEEEECCEEEEEeCcccCCCCceee
Q 018336          179 FFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ----ERDECEAVVIGSEFWVVSGYKTERQGIFDE  253 (358)
Q Consensus       179 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~----~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~  253 (358)
                       ...+. .++++|+....      ...+.++|+.+++-...-+...    ......++..++++|+..-.       ..+
T Consensus        87 -~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~-------~~~  152 (328)
T 3dsm_A           87 -RYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS-------YQN  152 (328)
T ss_dssp             -EEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT-------TCC
T ss_pred             -cEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC-------CCC
Confidence             23333 67899998632      2579999999887543211111    00222344578899998521       134


Q ss_pred             eeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC------CceE
Q 018336          254 SAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG------PQEF  327 (358)
Q Consensus       254 ~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~------~~~i  327 (358)
                      .+.++|+.+++....-...   ..+..   +                     .+.-++++|+........      ...+
T Consensus       153 ~v~viD~~t~~~~~~i~~g---~~p~~---i---------------------~~~~dG~l~v~~~~~~~~~~~~~~~~~v  205 (328)
T 3dsm_A          153 RILKIDTETDKVVDELTIG---IQPTS---L---------------------VMDKYNKMWTITDGGYEGSPYGYEAPSL  205 (328)
T ss_dssp             EEEEEETTTTEEEEEEECS---SCBCC---C---------------------EECTTSEEEEEBCCBCTTCSSCBCCCEE
T ss_pred             EEEEEECCCCeEEEEEEcC---CCccc---e---------------------EEcCCCCEEEEECCCccCCccccCCceE
Confidence            6889999998754322211   01111   1                     233468888875322110      1589


Q ss_pred             EEEECCCCceEee-cCC
Q 018336          328 YVVEGRNGKFRKF-DVP  343 (358)
Q Consensus       328 ~~yd~~~~~W~~~-~~p  343 (358)
                      +++|+++++.... .+|
T Consensus       206 ~~id~~t~~v~~~~~~~  222 (328)
T 3dsm_A          206 YRIDAETFTVEKQFKFK  222 (328)
T ss_dssp             EEEETTTTEEEEEEECC
T ss_pred             EEEECCCCeEEEEEecC
Confidence            9999998886543 444

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.64  E-value=0.0033  Score=52.76  Aligned_cols=154  Identities=5%  Similarity=-0.099  Sum_probs=96.6

Q ss_pred             eEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEEC
Q 018336          131 CQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDL  210 (358)
Q Consensus       131 ~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~  210 (358)
                      .++...++.||+..|..       ..+.++|+.|++-..-- ++......+.+..+++||++...      .+.+.+||+
T Consensus        58 qGL~~~~~~Ly~stG~~-------g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~------~~~v~V~D~  123 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQ-------GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT------EGLLFTWSG  123 (268)
T ss_dssp             EEEEEETTEEEEEETTT-------TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS------SCEEEEEET
T ss_pred             ceEEEECCEEEEEcCCC-------CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc------CCEEEEEEC
Confidence            45666789999998853       24899999998753322 44433445567778999998432      357999999


Q ss_pred             CCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEE-cCCccccCCCCCceeeeeecCc
Q 018336          211 IKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKR-AENAWKLSQCPRSNVGVGREGK  289 (358)
Q Consensus       211 ~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~-~~~~p~~~~~~~~~~~~~~d~~  289 (358)
                      ++.+-.  ..++.+..+.+++.-+++||+.-|         .+.+..+|+++.+-.. +..- .   .++..        
T Consensus       124 ~Tl~~~--~ti~~~~eGwGLt~Dg~~L~vSdG---------s~~l~~iDp~T~~v~~~I~V~-~---~g~~v--------  180 (268)
T 3nok_A          124 MPPQRE--RTTRYSGEGWGLCYWNGKLVRSDG---------GTMLTFHEPDGFALVGAVQVK-L---RGQPV--------  180 (268)
T ss_dssp             TTTEEE--EEEECSSCCCCEEEETTEEEEECS---------SSEEEEECTTTCCEEEEEECE-E---TTEEC--------
T ss_pred             CcCcEE--EEEeCCCceeEEecCCCEEEEECC---------CCEEEEEcCCCCeEEEEEEeC-C---CCccc--------
Confidence            986543  223333345566677788999865         2367899999875432 2211 0   00000        


Q ss_pred             cCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          290 LFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       290 ~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                                 ....-+...+++||+---..    +.|.+.|+++++
T Consensus       181 -----------~~lNeLe~~dG~lyanvw~s----~~I~vIDp~TG~  212 (268)
T 3nok_A          181 -----------ELINELECANGVIYANIWHS----SDVLEIDPATGT  212 (268)
T ss_dssp             -----------CCEEEEEEETTEEEEEETTC----SEEEEECTTTCB
T ss_pred             -----------ccccccEEeCCEEEEEECCC----CeEEEEeCCCCc
Confidence                       00111234588988644222    689999999987

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.62  E-value=0.012  Score=51.29  Aligned_cols=183  Identities=11%  Similarity=-0.032  Sum_probs=103.2

Q ss_pred             ceEEEEeCCCCCe-eecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCC--CC
Q 018336          102 YGVTVFDPVSLTW-DRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMP--DN  176 (358)
Q Consensus       102 ~~~~~~d~~~~~W-~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~--~~  176 (358)
                      ..+.++|+.+.+- ..++....       ...++. .++++|+....       ...+.++|+.+++-.. ++.-.  ..
T Consensus        64 ~~v~viD~~t~~~~~~i~~~~~-------p~~i~~~~~g~lyv~~~~-------~~~v~~iD~~t~~~~~~i~~g~~~~~  129 (328)
T 3dsm_A           64 HVIFAIDINTFKEVGRITGFTS-------PRYIHFLSDEKAYVTQIW-------DYRIFIINPKTYEITGYIECPDMDME  129 (328)
T ss_dssp             TEEEEEETTTCCEEEEEECCSS-------EEEEEEEETTEEEEEEBS-------CSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred             CEEEEEECcccEEEEEcCCCCC-------CcEEEEeCCCeEEEEECC-------CCeEEEEECCCCeEEEEEEcCCcccc
Confidence            4788999998876 33432222       124444 67899998742       3579999999987543 22111  00


Q ss_pred             -ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE-EECCEEEEEeCcccCCC--Ccee
Q 018336          177 -RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV-VIGSEFWVVSGYKTERQ--GIFD  252 (358)
Q Consensus       177 -~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~lyv~gG~~~~~~--~~~~  252 (358)
                       ..-..++..++++|+..- .    ....+.++|+.+++....-+...  ....++ .-+|++|+.........  ..-.
T Consensus       130 ~~~p~~i~~~~~~lyv~~~-~----~~~~v~viD~~t~~~~~~i~~g~--~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~  202 (328)
T 3dsm_A          130 SGSTEQMVQYGKYVYVNCW-S----YQNRILKIDTETDKVVDELTIGI--QPTSLVMDKYNKMWTITDGGYEGSPYGYEA  202 (328)
T ss_dssp             TCBCCCEEEETTEEEEEEC-T----TCCEEEEEETTTTEEEEEEECSS--CBCCCEECTTSEEEEEBCCBCTTCSSCBCC
T ss_pred             CCCcceEEEECCEEEEEcC-C----CCCEEEEEECCCCeEEEEEEcCC--CccceEEcCCCCEEEEECCCccCCccccCC
Confidence             022234447899999842 0    13579999999987653222211  111222 33688888864321110  0002


Q ss_pred             eeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEe--CCeEEEECCCCCCCCceEEEE
Q 018336          253 ESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVEL--GGCTLVTGSGYQGGPQEFYVV  330 (358)
Q Consensus       253 ~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~--~~~i~v~gG~~~~~~~~i~~y  330 (358)
                      ..+.++|+.+++....-..+... .+                         ..++..  ++.||+..+       .++++
T Consensus       203 ~~v~~id~~t~~v~~~~~~~~g~-~p-------------------------~~la~~~d~~~lyv~~~-------~v~~~  249 (328)
T 3dsm_A          203 PSLYRIDAETFTVEKQFKFKLGD-WP-------------------------SEVQLNGTRDTLYWINN-------DIWRM  249 (328)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTC-CC-------------------------EEEEECTTSCEEEEESS-------SEEEE
T ss_pred             ceEEEEECCCCeEEEEEecCCCC-Cc-------------------------eeEEEecCCCEEEEEcc-------EEEEE
Confidence            57899999988765322222110 11                         112323  567888754       68899


Q ss_pred             ECCCCceE
Q 018336          331 EGRNGKFR  338 (358)
Q Consensus       331 d~~~~~W~  338 (358)
                      |+++++..
T Consensus       250 d~~t~~~~  257 (328)
T 3dsm_A          250 PVEADRVP  257 (328)
T ss_dssp             ETTCSSCC
T ss_pred             ECCCCcee
Confidence            99887753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.62  E-value=0.0018  Score=53.76  Aligned_cols=113  Identities=12%  Similarity=-0.037  Sum_probs=81.3

Q ss_pred             eeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEE
Q 018336          179 FFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESY  258 (358)
Q Consensus       179 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~y  258 (358)
                      -.++...++.+|+..|....    +.+.++|+++++=..--+++....+.+++..+++||++...        .+.+++|
T Consensus        23 tqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~--------~~~v~v~   90 (243)
T 3mbr_X           23 TEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR--------NHEGFVY   90 (243)
T ss_dssp             EEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS--------SSEEEEE
T ss_pred             cccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee--------CCEEEEE
Confidence            34667778999999886532    67999999999877655677666777788899999999643        3578899


Q ss_pred             ECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          259 QLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       259 d~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                      |+++.+-  +..++... .                         +-+++.-+++||+.-|.     +.++++|+++.+
T Consensus        91 D~~tl~~--~~ti~~~~-~-------------------------Gwglt~dg~~L~vSdgs-----~~l~~iDp~t~~  135 (243)
T 3mbr_X           91 DLATLTP--RARFRYPG-E-------------------------GWALTSDDSHLYMSDGT-----AVIRKLDPDTLQ  135 (243)
T ss_dssp             ETTTTEE--EEEEECSS-C-------------------------CCEEEECSSCEEEECSS-----SEEEEECTTTCC
T ss_pred             ECCcCcE--EEEEeCCC-C-------------------------ceEEeeCCCEEEEECCC-----CeEEEEeCCCCe
Confidence            9988653  22322111 1                         12345667889998774     589999999876

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.54  E-value=0.014  Score=49.23  Aligned_cols=157  Identities=12%  Similarity=-0.026  Sum_probs=93.2

Q ss_pred             eEEEEEC-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEE
Q 018336          131 CQVASSQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYD  209 (358)
Q Consensus       131 ~~~~~~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd  209 (358)
                      ++++..+ +.||+..|..+     .+.+.++|+.|++-..--+++......+.+..++.+|+..-      ..+.+.+||
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~-----~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~------~~~~v~viD   92 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYG-----RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW------LKNIGFIYD   92 (266)
T ss_dssp             EEEEECSTTEEEEEECSTT-----TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET------TCSEEEEEE
T ss_pred             ccEEEeCCCeEEEECCCCC-----CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe------cCCEEEEEE
Confidence            3555555 89999877422     35899999999886543333333344456667889999942      236799999


Q ss_pred             CCCCceEecCCCccC-cCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceE-EcCCccccCCCCCceeeeeec
Q 018336          210 LIKDEWTELARMTQE-RDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWK-RAENAWKLSQCPRSNVGVGRE  287 (358)
Q Consensus       210 ~~t~~W~~~~~~p~~-~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~-~~~~~p~~~~~~~~~~~~~~d  287 (358)
                      +.+.+=  +..++.+ ..+.+++.-++++|+..|         .+.+.++|+++.+-. .+..- .   .++.       
T Consensus        93 ~~t~~v--~~~i~~g~~~g~glt~Dg~~l~vs~g---------s~~l~viD~~t~~v~~~I~Vg-~---~~~p-------  150 (266)
T 2iwa_A           93 RRTLSN--IKNFTHQMKDGWGLATDGKILYGSDG---------TSILYEIDPHTFKLIKKHNVK-Y---NGHR-------  150 (266)
T ss_dssp             TTTTEE--EEEEECCSSSCCEEEECSSSEEEECS---------SSEEEEECTTTCCEEEEEECE-E---TTEE-------
T ss_pred             CCCCcE--EEEEECCCCCeEEEEECCCEEEEECC---------CCeEEEEECCCCcEEEEEEEC-C---CCcc-------
Confidence            987643  2223222 233344444556887753         346889999886532 22211 0   0000       


Q ss_pred             CccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          288 GKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       288 ~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                                  ......+...+++||+--...    +.|.+.|+++++
T Consensus       151 ------------~~~~nele~~dg~lyvn~~~~----~~V~vID~~tg~  183 (266)
T 2iwa_A          151 ------------VIRLNELEYINGEVWANIWQT----DCIARISAKDGT  183 (266)
T ss_dssp             ------------CCCEEEEEEETTEEEEEETTS----SEEEEEETTTCC
T ss_pred             ------------cccceeEEEECCEEEEecCCC----CeEEEEECCCCc
Confidence                        000112233488998765433    689999999887

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.47  E-value=0.027  Score=50.00  Aligned_cols=172  Identities=14%  Similarity=0.205  Sum_probs=100.7

Q ss_pred             ceEEEEeCCCCC--eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCC--
Q 018336          102 YGVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPD--  175 (358)
Q Consensus       102 ~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--  175 (358)
                      ..+.++|+.+++  |+.-..-..       ....+..++.||+...        ...++.+|+.+.+  |+.-...+.  
T Consensus       113 g~l~a~d~~tG~~~W~~~~~~~~-------~~~p~~~~~~v~v~~~--------~g~l~~~d~~tG~~~W~~~~~~~~~~  177 (376)
T 3q7m_A          113 AQVYALNTSDGTVAWQTKVAGEA-------LSRPVVSDGLVLIHTS--------NGQLQALNEADGAVKWTVNLDMPSLS  177 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCC-------CSCCEEETTEEEEECT--------TSEEEEEETTTCCEEEEEECCC----
T ss_pred             CEEEEEECCCCCEEEEEeCCCce-------EcCCEEECCEEEEEcC--------CCeEEEEECCCCcEEEEEeCCCCcee
Confidence            368999998775  654322111       1123455788887643        2379999998875  765432221  


Q ss_pred             CceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceEecCCCccCc--------CceeEEEECCEEEEEeCccc
Q 018336          176 NRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD--EWTELARMTQER--------DECEAVVIGSEFWVVSGYKT  245 (358)
Q Consensus       176 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~~--------~~~~~~~~~~~lyv~gG~~~  245 (358)
                      .+.....+..++.+|+. ..      ...+..||+.++  .|+.-...+...        .....+..++.+|+.+.   
T Consensus       178 ~~~~~~~~~~~~~v~~g-~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~---  247 (376)
T 3q7m_A          178 LRGESAPTTAFGAAVVG-GD------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY---  247 (376)
T ss_dssp             -CCCCCCEEETTEEEEC-CT------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT---
T ss_pred             ecCCCCcEEECCEEEEE-cC------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec---
Confidence            12223344557777763 21      246999999766  477543322111        12334567888888752   


Q ss_pred             CCCCceeeeeEEEECCCCc--eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC
Q 018336          246 ERQGIFDESAESYQLGTGE--WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG  323 (358)
Q Consensus       246 ~~~~~~~~~i~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~  323 (358)
                            ...+.++|+.+++  |+.-...                               ....+..++.||+....    
T Consensus       248 ------~g~l~~~d~~tG~~~w~~~~~~-------------------------------~~~~~~~~~~l~~~~~~----  286 (376)
T 3q7m_A          248 ------NGNLTALDLRSGQIMWKRELGS-------------------------------VNDFIVDGNRIYLVDQN----  286 (376)
T ss_dssp             ------TSCEEEEETTTCCEEEEECCCC-------------------------------EEEEEEETTEEEEEETT----
T ss_pred             ------CcEEEEEECCCCcEEeeccCCC-------------------------------CCCceEECCEEEEEcCC----
Confidence                  2357899998774  7643211                               01235568899887643    


Q ss_pred             CceEEEEECCCCc--eEee
Q 018336          324 PQEFYVVEGRNGK--FRKF  340 (358)
Q Consensus       324 ~~~i~~yd~~~~~--W~~~  340 (358)
                       ..++.||+.+++  |+.-
T Consensus       287 -g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          287 -DRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             -CCEEEEETTTCCEEEEEC
T ss_pred             -CeEEEEECCCCcEEEeec
Confidence             479999998776  7653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.46  E-value=3.8e-05  Score=64.96  Aligned_cols=47  Identities=13%  Similarity=0.145  Sum_probs=42.7

Q ss_pred             CCCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHHHHHh
Q 018336           26 LVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRKQ   72 (358)
Q Consensus        26 ~~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~~~~~   72 (358)
                      .|..||+|++..||+.|++++++++..|||.|+.+..++.+++....
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~   50 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLL   50 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHh
Confidence            35679999999999999999999999999999999999998876544

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.25  E-value=0.0028  Score=53.10  Aligned_cols=112  Identities=6%  Similarity=-0.134  Sum_probs=76.7

Q ss_pred             eeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEE
Q 018336          180 FAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQ  259 (358)
Q Consensus       180 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd  259 (358)
                      .++...++.+|+..|....    +.+.++|+++++=..--+++...++.+++..+++||+....        .+.+.+||
T Consensus        46 qGL~~~~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~--------~~~v~v~D  113 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNGR----SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK--------NGLGFVWN  113 (262)
T ss_dssp             EEEEEETTEEEEEEEETTE----EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS--------SSEEEEEE
T ss_pred             ceEEEECCEEEEECCCCCC----ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee--------CCEEEEEE
Confidence            4555568999999885432    57999999999866544566555566678899999999653        34688999


Q ss_pred             CCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          260 LGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       260 ~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                      +++.+-.  ..++... .                         +-+++.-++.||+.-|.     +.++.+|+++.+
T Consensus       114 ~~t~~~~--~ti~~~~-e-------------------------G~glt~dg~~L~~SdGs-----~~i~~iDp~T~~  157 (262)
T 3nol_A          114 IRNLRQV--RSFNYDG-E-------------------------GWGLTHNDQYLIMSDGT-----PVLRFLDPESLT  157 (262)
T ss_dssp             TTTCCEE--EEEECSS-C-------------------------CCCEEECSSCEEECCSS-----SEEEEECTTTCS
T ss_pred             CccCcEE--EEEECCC-C-------------------------ceEEecCCCEEEEECCC-----CeEEEEcCCCCe
Confidence            9887543  2222111 1                         11235556778887763     589999999866

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.04  E-value=0.15  Score=45.02  Aligned_cols=174  Identities=16%  Similarity=0.175  Sum_probs=99.4

Q ss_pred             ceEEEEeCCCCC--eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCCc
Q 018336          102 YGVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDNR  177 (358)
Q Consensus       102 ~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~  177 (358)
                      ..+.++|+.+++  |..-...+...  .......+..++.||+...        ...++.+|+.+.+  |+.-...+...
T Consensus       153 g~l~~~d~~tG~~~W~~~~~~~~~~--~~~~~~~~~~~~~v~~g~~--------~g~l~~~d~~tG~~~w~~~~~~~~~~  222 (376)
T 3q7m_A          153 GQLQALNEADGAVKWTVNLDMPSLS--LRGESAPTTAFGAAVVGGD--------NGRVSAVLMEQGQMIWQQRISQATGS  222 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECCC-------CCCCCCEEETTEEEECCT--------TTEEEEEETTTCCEEEEEECCC----
T ss_pred             CeEEEEECCCCcEEEEEeCCCCcee--ecCCCCcEEECCEEEEEcC--------CCEEEEEECCCCcEEEEEecccCCCC
Confidence            368899998876  76544322110  0111233445777776322        2368999998764  65532222111


Q ss_pred             --------eeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceEecCCCccCcCceeEEEECCEEEEEeCcccCC
Q 018336          178 --------SFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD--EWTELARMTQERDECEAVVIGSEFWVVSGYKTER  247 (358)
Q Consensus       178 --------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~  247 (358)
                              .....+..++.+|+.+.       ...+.++|+.++  .|+.-..     .....+..++.+|+...     
T Consensus       223 ~~~~~~~~~~~~p~~~~~~v~~~~~-------~g~l~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~l~~~~~-----  285 (376)
T 3q7m_A          223 TEIDRLSDVDTTPVVVNGVVFALAY-------NGNLTALDLRSGQIMWKRELG-----SVNDFIVDGNRIYLVDQ-----  285 (376)
T ss_dssp             -------CCCCCCEEETTEEEEECT-------TSCEEEEETTTCCEEEEECCC-----CEEEEEEETTEEEEEET-----
T ss_pred             cccccccccCCCcEEECCEEEEEec-------CcEEEEEECCCCcEEeeccCC-----CCCCceEECCEEEEEcC-----
Confidence                    12333456888888742       235899999876  4764321     12235567888998863     


Q ss_pred             CCceeeeeEEEECCCCc--eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCc
Q 018336          248 QGIFDESAESYQLGTGE--WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQ  325 (358)
Q Consensus       248 ~~~~~~~i~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~  325 (358)
                          ...+.+||+.+++  |+.-... ..     .                      ..+.+..++.||+....     .
T Consensus       286 ----~g~l~~~d~~tG~~~w~~~~~~-~~-----~----------------------~~~~~~~~~~l~v~~~~-----g  328 (376)
T 3q7m_A          286 ----NDRVMALTIDGGVTLWTQSDLL-HR-----L----------------------LTSPVLYNGNLVVGDSE-----G  328 (376)
T ss_dssp             ----TCCEEEEETTTCCEEEEECTTT-TS-----C----------------------CCCCEEETTEEEEECTT-----S
T ss_pred             ----CCeEEEEECCCCcEEEeecccC-CC-----c----------------------ccCCEEECCEEEEEeCC-----C
Confidence                2357899998875  7653211 00     0                      01124568888876542     4


Q ss_pred             eEEEEECCCCc--eEe
Q 018336          326 EFYVVEGRNGK--FRK  339 (358)
Q Consensus       326 ~i~~yd~~~~~--W~~  339 (358)
                      .+++||+.+++  |+.
T Consensus       329 ~l~~~d~~tG~~~~~~  344 (376)
T 3q7m_A          329 YLHWINVEDGRFVAQQ  344 (376)
T ss_dssp             EEEEEETTTCCEEEEE
T ss_pred             eEEEEECCCCcEEEEE
Confidence            79999998877  654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.97  E-value=0.00036  Score=61.32  Aligned_cols=44  Identities=23%  Similarity=0.360  Sum_probs=38.6

Q ss_pred             cCCCCCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhh
Q 018336           23 FGELVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDF   66 (358)
Q Consensus        23 ~~~~~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f   66 (358)
                      ....|..||+|++.+||.+|+..++.+++.|||+|+.+..++..
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~   48 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence            34578999999999999999999999999999999999877653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=96.87  E-value=0.14  Score=44.36  Aligned_cols=208  Identities=13%  Similarity=-0.020  Sum_probs=99.4

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCC-----
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPD-----  175 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-----  175 (358)
                      ..+..+|+.+.+-...-+....+    .. ....- ++.+|+.+..       ...+++||+.+.+-...-+.+.     
T Consensus        69 ~~v~~~d~~~~~~~~~~~~~~~~----~~-~~~s~dg~~l~v~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~~~  136 (353)
T 3vgz_A           69 GVVYRLDPVTLEVTQAIHNDLKP----FG-ATINNTTQTLWFGNTV-------NSAVTAIDAKTGEVKGRLVLDDRKRTE  136 (353)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCC----CS-EEEETTTTEEEEEETT-------TTEEEEEETTTCCEEEEEESCCCCCCS
T ss_pred             ccEEEEcCCCCeEEEEEecCCCc----ce-EEECCCCCEEEEEecC-------CCEEEEEeCCCCeeEEEEecCCCcccc
Confidence            47889999888754432222211    11 22233 3558887653       2479999999877533211111     


Q ss_pred             ---CceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE-EECCE-EEEEeCcccCCC
Q 018336          176 ---NRSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV-VIGSE-FWVVSGYKTERQ  248 (358)
Q Consensus       176 ---~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~-lyv~gG~~~~~~  248 (358)
                         +..-...+..  ++.+|+.+...     ...+++||+.+.+-...-+.... ....++ .-+++ +|+...      
T Consensus       137 ~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~------  204 (353)
T 3vgz_A          137 EVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGK-MSTGLALDSEGKRLYTTNA------  204 (353)
T ss_dssp             SCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCT-TCCCCEEETTTTEEEEECT------
T ss_pred             ccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCC-ccceEEECCCCCEEEEEcC------
Confidence               1112223332  45677775221     24699999987754332221111 112222 33444 665542      


Q ss_pred             CceeeeeEEEECCCCceEEcCCccccC-----------CCCCce-e-------eeeecCccCce-eccccceeeceEEEE
Q 018336          249 GIFDESAESYQLGTGEWKRAENAWKLS-----------QCPRSN-V-------GVGREGKLFCW-AETEAAVQFGTCRVE  308 (358)
Q Consensus       249 ~~~~~~i~~yd~~~~~W~~~~~~p~~~-----------~~~~~~-~-------~~~~d~~~~~W-~~lp~~~r~~~~~~~  308 (358)
                         ...+.+||+.+++-..........           +..+.. +       ...||.++.+. ..++.......+...
T Consensus       205 ---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~s~  281 (353)
T 3vgz_A          205 ---DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLAVLFNP  281 (353)
T ss_dssp             ---TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCEEEET
T ss_pred             ---CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCceEEECC
Confidence               125667888776532211110000           001100 0       01566665544 222222112222222


Q ss_pred             eCCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336          309 LGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       309 ~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                      -++.+|+.+...    ..+.+||..+.+....
T Consensus       282 dg~~l~v~~~~~----~~v~~~d~~~~~~~~~  309 (353)
T 3vgz_A          282 ARNEAYVTHRQA----GKVSVIDAKSYKVVKT  309 (353)
T ss_dssp             TTTEEEEEETTT----TEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEECCC----CeEEEEECCCCeEEEE
Confidence            244577776433    5899999988775443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.77  E-value=0.037  Score=49.06  Aligned_cols=135  Identities=13%  Similarity=0.031  Sum_probs=72.7

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF  179 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~  179 (358)
                      ..+..||..+++-...-....     . ..+++..  +..||+.++.       ...+.+||..+++....-..+.  .-
T Consensus        12 ~~v~v~d~~~~~~~~~~~~~~-----~-~~~~~~s~dg~~l~~~~~~-------d~~i~v~d~~~~~~~~~~~~~~--~v   76 (391)
T 1l0q_A           12 DNISVIDVTSNKVTATIPVGS-----N-PMGAVISPDGTKVYVANAH-------SNDVSIIDTATNNVIATVPAGS--SP   76 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSS-----S-EEEEEECTTSSEEEEEEGG-------GTEEEEEETTTTEEEEEEECSS--SE
T ss_pred             CEEEEEECCCCeEEEEeecCC-----C-cceEEECCCCCEEEEECCC-------CCeEEEEECCCCeEEEEEECCC--Cc
Confidence            368899998876543322221     1 1133332  3457777653       2479999998877644322222  11


Q ss_pred             eeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE-ECCE-EEEEeCcccCCCCceeeee
Q 018336          180 FAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV-IGSE-FWVVSGYKTERQGIFDESA  255 (358)
Q Consensus       180 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~-~~~~-lyv~gG~~~~~~~~~~~~i  255 (358)
                      ..++..  +..+|+.+..+      ..+.+||+.+++-...-...  .....++. -+++ +|+.++.        ...+
T Consensus        77 ~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~--------~~~v  140 (391)
T 1l0q_A           77 QGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNG--------DKTV  140 (391)
T ss_dssp             EEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETT--------TTEE
T ss_pred             cceEECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEeCC--CCcceEEECCCCCEEEEEeCC--------CCEE
Confidence            222222  34566665322      46999999987654332221  11122222 2444 6677643        2367


Q ss_pred             EEEECCCCceEE
Q 018336          256 ESYQLGTGEWKR  267 (358)
Q Consensus       256 ~~yd~~~~~W~~  267 (358)
                      ..||+.+++...
T Consensus       141 ~~~d~~~~~~~~  152 (391)
T 1l0q_A          141 SVINTVTKAVIN  152 (391)
T ss_dssp             EEEETTTTEEEE
T ss_pred             EEEECCCCcEEE
Confidence            889998876543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=96.65  E-value=0.14  Score=46.13  Aligned_cols=215  Identities=11%  Similarity=0.032  Sum_probs=106.7

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA  181 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~  181 (358)
                      ..+..+|.....-..+.....     ........-++..+++++.+..    ...++++|..+.+...+...+..  ..+
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~-----~v~~~~~Spdg~~la~~s~~~~----~~~i~~~d~~tg~~~~l~~~~~~--~~~  227 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQ-----PLMSPAWSPDGSKLAYVTFESG----RSALVIQTLANGAVRQVASFPRH--NGA  227 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESS-----CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEEEECCSSC--EEE
T ss_pred             ceEEEEcCCCCCCEEEeCCCC-----cceeeEEcCCCCEEEEEEecCC----CcEEEEEECCCCcEEEeecCCCc--ccC
Confidence            467788877654444332111     1111112224554444443321    34899999999887765443321  122


Q ss_pred             eEEE-CC-EEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE--ECCEEEEEeCcccCCCCceeeeeEE
Q 018336          182 AGEL-NG-RVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV--IGSEFWVVSGYKTERQGIFDESAES  257 (358)
Q Consensus       182 ~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~--~~~~lyv~gG~~~~~~~~~~~~i~~  257 (358)
                      .+.. ++ .|++.+..+.    ...++++|..++..+.+.....   ......  -+|+.+++++....     ...++.
T Consensus       228 ~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~~~---~~~~~~~spdg~~l~~~s~~~g-----~~~i~~  295 (415)
T 2hqs_A          228 PAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRS---NNTEPTWFPDSQNLAFTSDQAG-----RPQVYK  295 (415)
T ss_dssp             EEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCCSS---CEEEEEECTTSSEEEEEECTTS-----SCEEEE
T ss_pred             EEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCCCC---cccceEECCCCCEEEEEECCCC-----CcEEEE
Confidence            2222 44 4555544322    2579999999888776654321   112222  25654444332111     235777


Q ss_pred             EECCCCceEEcCCccc------cCCCCCcee----------eeeecCccCceeccccceeeceEEEEeCCeEEEECCCCC
Q 018336          258 YQLGTGEWKRAENAWK------LSQCPRSNV----------GVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQ  321 (358)
Q Consensus       258 yd~~~~~W~~~~~~p~------~~~~~~~~~----------~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~  321 (358)
                      +|..+++-..+.....      -.+..+...          ...+|.++.+...+............-+++.+++++...
T Consensus       296 ~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          296 VNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             EETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEET
T ss_pred             EECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEcCC
Confidence            8887766444322100      001111111          114566665554444332222223344677666665432


Q ss_pred             CCCceEEEEECCCCceEee
Q 018336          322 GGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       322 ~~~~~i~~yd~~~~~W~~~  340 (358)
                      + ...++++|...+..+.+
T Consensus       376 ~-~~~l~~~d~~g~~~~~l  393 (415)
T 2hqs_A          376 M-GSVLNLVSTDGRFKARL  393 (415)
T ss_dssp             T-EEEEEEEETTSCCEEEC
T ss_pred             C-ccEEEEEECCCCcEEEe
Confidence            1 25799999988877775

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.60  E-value=0.028  Score=47.09  Aligned_cols=109  Identities=8%  Similarity=-0.069  Sum_probs=74.5

Q ss_pred             eeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEE
Q 018336          180 FAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQ  259 (358)
Q Consensus       180 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd  259 (358)
                      .++...++.+|+..|...      .+.++|+++++=..-- ++...++.+++..+++||+....        .+.+.+||
T Consensus        58 qGL~~~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~--------~~~v~V~D  122 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQG------TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT--------EGLLFTWS  122 (268)
T ss_dssp             EEEEEETTEEEEEETTTT------EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS--------SCEEEEEE
T ss_pred             ceEEEECCEEEEEcCCCC------EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc--------CCEEEEEE
Confidence            455566899999987542      3999999998754433 55555556677888999999643        35789999


Q ss_pred             CCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          260 LGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       260 ~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                      +++.+-.  ..++... .                         +.+++.-+++||+.-|.     +.++.+|+++.+
T Consensus       123 ~~Tl~~~--~ti~~~~-e-------------------------GwGLt~Dg~~L~vSdGs-----~~l~~iDp~T~~  166 (268)
T 3nok_A          123 GMPPQRE--RTTRYSG-E-------------------------GWGLCYWNGKLVRSDGG-----TMLTFHEPDGFA  166 (268)
T ss_dssp             TTTTEEE--EEEECSS-C-------------------------CCCEEEETTEEEEECSS-----SEEEEECTTTCC
T ss_pred             CCcCcEE--EEEeCCC-c-------------------------eeEEecCCCEEEEECCC-----CEEEEEcCCCCe
Confidence            9886533  2222111 1                         11345667889998874     689999999876

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=96.59  E-value=0.21  Score=42.21  Aligned_cols=176  Identities=9%  Similarity=-0.010  Sum_probs=91.6

Q ss_pred             ceEEEEeCCCCC--eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCCc
Q 018336          102 YGVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDNR  177 (358)
Q Consensus       102 ~~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~  177 (358)
                      ..+.++|+.+++  |+.-..-..     ......+.-++.+++.+         .+.+.+||+ +.+  |+.-.+  ...
T Consensus        15 ~~v~~~d~~tG~~~w~~~~~~~~-----~~~~~~~~pdG~ilvs~---------~~~V~~~d~-~G~~~W~~~~~--~~~   77 (276)
T 3no2_A           15 NKIAIINKDTKEIVWEYPLEKGW-----ECNSVAATKAGEILFSY---------SKGAKMITR-DGRELWNIAAP--AGC   77 (276)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTC-----CCCEEEECTTSCEEEEC---------BSEEEEECT-TSCEEEEEECC--TTC
T ss_pred             CEEEEEECCCCeEEEEeCCCccC-----CCcCeEECCCCCEEEeC---------CCCEEEECC-CCCEEEEEcCC--CCc
Confidence            478889997775  654332111     11223333477787732         236899999 543  654332  111


Q ss_pred             eeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCC-ceEec-C-CCccC--cCceeEEEECCEEEEEeCcccCCCCce
Q 018336          178 SFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKD-EWTEL-A-RMTQE--RDECEAVVIGSEFWVVSGYKTERQGIF  251 (358)
Q Consensus       178 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~-~-~~p~~--~~~~~~~~~~~~lyv~gG~~~~~~~~~  251 (358)
                      ..+++.. .++.+++.....     ...++.+|+... .|+.- . ..+..  .........+|.+++....        
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~--------  144 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA--------  144 (276)
T ss_dssp             EEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT--------
T ss_pred             cccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC--------
Confidence            2233333 366666654321     135778887433 24421 1 11111  1112233456777766532        


Q ss_pred             eeeeEEEECCCC-ceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEE
Q 018336          252 DESAESYQLGTG-EWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVV  330 (358)
Q Consensus       252 ~~~i~~yd~~~~-~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~y  330 (358)
                      ...+.+||++-+ .|+.-...     .+.                        ......++.++|.+...    ..+..+
T Consensus       145 ~~~v~~~d~~G~~~w~~~~~~-----~~~------------------------~~~~~~~g~~~v~~~~~----~~v~~~  191 (276)
T 3no2_A          145 TSEVREIAPNGQLLNSVKLSG-----TPF------------------------SSAFLDNGDCLVACGDA----HCFVQL  191 (276)
T ss_dssp             TTEEEEECTTSCEEEEEECSS-----CCC------------------------EEEECTTSCEEEECBTT----SEEEEE
T ss_pred             CCEEEEECCCCCEEEEEECCC-----Ccc------------------------ceeEcCCCCEEEEeCCC----CeEEEE
Confidence            236889999822 36643321     111                        12234577888877653    469999


Q ss_pred             ECCCCc--eEee
Q 018336          331 EGRNGK--FRKF  340 (358)
Q Consensus       331 d~~~~~--W~~~  340 (358)
                      |+++++  |+.-
T Consensus       192 d~~tG~~~w~~~  203 (276)
T 3no2_A          192 NLESNRIVRRVN  203 (276)
T ss_dssp             CTTTCCEEEEEE
T ss_pred             eCcCCcEEEEec
Confidence            999666  7764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.57  E-value=0.26  Score=40.93  Aligned_cols=136  Identities=13%  Similarity=-0.092  Sum_probs=69.9

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      ..+..||+.+............     ...+++.. ++.+|+...        ...+++||+.+.....+...... .-.
T Consensus        46 ~~i~~~~~~~~~~~~~~~~~~~-----~p~~i~~~~~g~l~v~~~--------~~~i~~~d~~~~~~~~~~~~~~~-~p~  111 (270)
T 1rwi_B           46 GRVVKLATGSTGTTVLPFNGLY-----QPQGLAVDGAGTVYVTDF--------NNRVVTLAAGSNNQTVLPFDGLN-YPE  111 (270)
T ss_dssp             CEEEEECC-----EECCCCSCC-----SCCCEEECTTCCEEEEET--------TTEEEEECTTCSCCEECCCCSCS-SEE
T ss_pred             CcEEEecCCCcccceEeeCCcC-----CcceeEECCCCCEEEEcC--------CCEEEEEeCCCceEeeeecCCcC-CCc
Confidence            3678888877665544322111     11133333 567888764        13689999988765544321111 122


Q ss_pred             eeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE-CCEEEEEeCcccCCCCceeeeeEEE
Q 018336          181 AAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI-GSEFWVVSGYKTERQGIFDESAESY  258 (358)
Q Consensus       181 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~~~i~~y  258 (358)
                      +++.. ++.+|+....      ...+.+|+..+.......... ......++.- +|++|+....        ...+.+|
T Consensus       112 ~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~--------~~~i~~~  176 (270)
T 1rwi_B          112 GLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDNSGNVYVTDTD--------NNRVVKL  176 (270)
T ss_dssp             EEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCCS-CCSCCCEEECTTCCEEEEEGG--------GTEEEEE
T ss_pred             ceEECCCCCEEEEECC------CCEEEEEECCCceeEeecccc-CCCceeEEEeCCCCEEEEECC--------CCEEEEE
Confidence            33332 5778887432      246888887765544332111 1111223332 5788887643        2367889


Q ss_pred             ECCCCceE
Q 018336          259 QLGTGEWK  266 (358)
Q Consensus       259 d~~~~~W~  266 (358)
                      |+.+..-.
T Consensus       177 ~~~~~~~~  184 (270)
T 1rwi_B          177 EAESNNQV  184 (270)
T ss_dssp             CTTTCCEE
T ss_pred             ecCCCceE
Confidence            98876543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.57  E-value=0.038  Score=46.58  Aligned_cols=113  Identities=12%  Similarity=-0.003  Sum_probs=73.3

Q ss_pred             eeeEEEC-CEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEE
Q 018336          180 FAAGELN-GRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESY  258 (358)
Q Consensus       180 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~y  258 (358)
                      ++++... +.+|+..|...    .+.+.++|+++++=..--+++......+++..+++||+..-.        .+.+.+|
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~----~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~--------~~~v~vi   91 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYG----RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL--------KNIGFIY   91 (266)
T ss_dssp             EEEEECSTTEEEEEECSTT----TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT--------CSEEEEE
T ss_pred             ccEEEeCCCeEEEECCCCC----CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec--------CCEEEEE
Confidence            4555554 89999876422    267999999998765433444444445667778899999643        4568899


Q ss_pred             ECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          259 QLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       259 d~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                      |+.+.+  .+..++..  .+.                       +.+++.-++++|+..|.     +.++++|+++.+
T Consensus        92 D~~t~~--v~~~i~~g--~~~-----------------------g~glt~Dg~~l~vs~gs-----~~l~viD~~t~~  137 (266)
T 2iwa_A           92 DRRTLS--NIKNFTHQ--MKD-----------------------GWGLATDGKILYGSDGT-----SILYEIDPHTFK  137 (266)
T ss_dssp             ETTTTE--EEEEEECC--SSS-----------------------CCEEEECSSSEEEECSS-----SEEEEECTTTCC
T ss_pred             ECCCCc--EEEEEECC--CCC-----------------------eEEEEECCCEEEEECCC-----CeEEEEECCCCc
Confidence            998764  33333211  011                       11235556789987653     689999999866

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.44  E-value=0.1  Score=46.13  Aligned_cols=134  Identities=13%  Similarity=0.017  Sum_probs=72.2

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF  179 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~  179 (358)
                      ..+..+|..+++-......+..      -..++..  +..||+.+..       ...+.+||..+++........  ...
T Consensus        54 ~~i~v~d~~~~~~~~~~~~~~~------v~~~~~spdg~~l~~~~~~-------~~~v~v~d~~~~~~~~~~~~~--~~~  118 (391)
T 1l0q_A           54 NDVSIIDTATNNVIATVPAGSS------PQGVAVSPDGKQVYVTNMA-------SSTLSVIDTTSNTVAGTVKTG--KSP  118 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECSSS------EEEEEECTTSSEEEEEETT-------TTEEEEEETTTTEEEEEEECS--SSE
T ss_pred             CeEEEEECCCCeEEEEEECCCC------ccceEECCCCCEEEEEECC-------CCEEEEEECCCCeEEEEEeCC--CCc
Confidence            3688899988765443322221      1123332  3457776542       247999999988754432211  112


Q ss_pred             eeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE-CC-EEEEEeCcccCCCCceeeee
Q 018336          180 FAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI-GS-EFWVVSGYKTERQGIFDESA  255 (358)
Q Consensus       180 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~-~lyv~gG~~~~~~~~~~~~i  255 (358)
                      ...+..  +..+|+.++.+      ..+.+||..+++....-....  ....++.. ++ .+|+.++.        ...+
T Consensus       119 ~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~--------~~~v  182 (391)
T 1l0q_A          119 LGLALSPDGKKLYVTNNGD------KTVSVINTVTKAVINTVSVGR--SPKGIAVTPDGTKVYVANFD--------SMSI  182 (391)
T ss_dssp             EEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETT--------TTEE
T ss_pred             ceEEECCCCCEEEEEeCCC------CEEEEEECCCCcEEEEEecCC--CcceEEECCCCCEEEEEeCC--------CCEE
Confidence            233332  34577776432      469999998876654322211  11222222 34 46666543        2357


Q ss_pred             EEEECCCCceE
Q 018336          256 ESYQLGTGEWK  266 (358)
Q Consensus       256 ~~yd~~~~~W~  266 (358)
                      ..||+.+++..
T Consensus       183 ~~~d~~~~~~~  193 (391)
T 1l0q_A          183 SVIDTVTNSVI  193 (391)
T ss_dssp             EEEETTTTEEE
T ss_pred             EEEECCCCeEE
Confidence            88999887543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.18  E-value=0.002  Score=61.23  Aligned_cols=36  Identities=14%  Similarity=0.377  Sum_probs=29.2

Q ss_pred             CCCCCCcHHHHHHHhccCC-cchhhhHHhhcHhHHHh
Q 018336           25 ELVPGLPEEISLECLTRLH-YSTHRVATRVSRRWRQL   60 (358)
Q Consensus        25 ~~~~~Lp~d~~~~il~rlp-~~~~~~~~~v~k~w~~l   60 (358)
                      ..|+.||+|++.+||.+|| .++..+++.|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            3688999999999999999 99999999999999987

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=96.16  E-value=0.44  Score=39.42  Aligned_cols=133  Identities=11%  Similarity=-0.051  Sum_probs=70.8

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~  181 (358)
                      .+..||+.......+.....     .....++.. ++.+|+....       ...+++||..+............ .-.+
T Consensus        88 ~i~~~d~~~~~~~~~~~~~~-----~~p~~i~~~~~g~l~v~~~~-------~~~i~~~~~~~~~~~~~~~~~~~-~p~~  154 (270)
T 1rwi_B           88 RVVTLAAGSNNQTVLPFDGL-----NYPEGLAVDTQGAVYVADRG-------NNRVVKLAAGSKTQTVLPFTGLN-DPDG  154 (270)
T ss_dssp             EEEEECTTCSCCEECCCCSC-----SSEEEEEECTTCCEEEEEGG-------GTEEEEECTTCCSCEECCCCSCC-SCCC
T ss_pred             EEEEEeCCCceEeeeecCCc-----CCCcceEECCCCCEEEEECC-------CCEEEEEECCCceeEeeccccCC-Ccee
Confidence            67889988766544432111     112234333 5778887542       24688888776554433211111 1122


Q ss_pred             eEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEE
Q 018336          182 AGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESY  258 (358)
Q Consensus       182 ~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~y  258 (358)
                      .+.. ++.+|+....      ...+.+||+.+..-.......  ......+.+  +|.+|+....        ...+.+|
T Consensus       155 i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~g~l~v~~~~--------~~~v~~~  218 (270)
T 1rwi_B          155 VAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPFTD--ITAPWGIAVDEAGTVYVTEHN--------TNQVVKL  218 (270)
T ss_dssp             EEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCCSS--CCSEEEEEECTTCCEEEEETT--------TSCEEEE
T ss_pred             EEEeCCCCEEEEECC------CCEEEEEecCCCceEeecccC--CCCceEEEECCCCCEEEEECC--------CCcEEEE
Confidence            3332 5778887532      246899999876544332111  122223333  4578887642        2357889


Q ss_pred             ECCCCc
Q 018336          259 QLGTGE  264 (358)
Q Consensus       259 d~~~~~  264 (358)
                      |+....
T Consensus       219 ~~~~~~  224 (270)
T 1rwi_B          219 LAGSTT  224 (270)
T ss_dssp             CTTCSC
T ss_pred             cCCCCc
Confidence            887654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=96.12  E-value=0.51  Score=39.59  Aligned_cols=136  Identities=7%  Similarity=-0.009  Sum_probs=72.8

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCC-Cceee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPD-NRSFF  180 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-~~~~~  180 (358)
                      .+..||+. ++......... .   .....++. .++.+|+....       ...+++||+. .+.+.+. ++. ...-.
T Consensus        37 ~v~~~d~~-~~~~~~~~~~~-~---~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~-g~~~~~~-~~~~~~~~~  102 (299)
T 2z2n_A           37 MISCINLD-GKITEYPLPTP-D---AKVMCLTISSDGEVWFTENA-------ANKIGRITKK-GIIKEYT-LPNPDSAPY  102 (299)
T ss_dssp             EEEEECTT-CCEEEEECSST-T---CCEEEEEECTTSCEEEEETT-------TTEEEEECTT-SCEEEEE-CSSTTCCEE
T ss_pred             cEEEEcCC-CCeEEecCCcc-c---CceeeEEECCCCCEEEeCCC-------CCeEEEECCC-CcEEEEe-CCCcCCCce
Confidence            68889998 77765532111 1   11223333 36778887542       2368999986 4554432 121 11222


Q ss_pred             eeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE-CCEEEEEeCcccCCCCceeeeeEEE
Q 018336          181 AAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI-GSEFWVVSGYKTERQGIFDESAESY  258 (358)
Q Consensus       181 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~~~i~~y  258 (358)
                      +++.. ++.+|+....      ...+.+||+ +++...............++.- +|++|+....        ...+.+|
T Consensus       103 ~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--------~~~i~~~  167 (299)
T 2z2n_A          103 GITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ--------NNAIGRI  167 (299)
T ss_dssp             EEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT--------TTEEEEE
T ss_pred             eeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC--------CCEEEEE
Confidence            33332 5788887432      246889998 6666544311111111223322 5678887521        2357889


Q ss_pred             ECCCCceEEc
Q 018336          259 QLGTGEWKRA  268 (358)
Q Consensus       259 d~~~~~W~~~  268 (358)
                      |+ +++...+
T Consensus       168 ~~-~g~~~~~  176 (299)
T 2z2n_A          168 TE-SGDITEF  176 (299)
T ss_dssp             CT-TCCEEEE
T ss_pred             cC-CCcEEEe
Confidence            99 7776654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=96.05  E-value=0.54  Score=39.39  Aligned_cols=145  Identities=11%  Similarity=0.099  Sum_probs=73.2

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE--ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS--SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF  179 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~  179 (358)
                      ..+..||+....-..+...............++.  .++.+|+.+...      ...+.+||+....-..+...... .-
T Consensus        51 ~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~------~~~i~~~d~~g~~~~~~~~~~~~-~~  123 (286)
T 1q7f_A           51 HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP------THQIQIYNQYGQFVRKFGATILQ-HP  123 (286)
T ss_dssp             TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG------GCEEEEECTTSCEEEEECTTTCS-CE
T ss_pred             CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC------CCEEEEECCCCcEEEEecCccCC-Cc
Confidence            3678888875433333321111100011234444  368899886421      24789999654443334321111 11


Q ss_pred             eeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeE
Q 018336          180 FAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAE  256 (358)
Q Consensus       180 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~  256 (358)
                      .+++. -++.+|+....      ...+.+||+.......+... ........+.+  +|++|+....        ...|.
T Consensus       124 ~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~-~~~~~p~~i~~~~~g~l~v~~~~--------~~~i~  188 (286)
T 1q7f_A          124 RGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCS-KHLEFPNGVVVNDKQEIFISDNR--------AHCVK  188 (286)
T ss_dssp             EEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECT-TTCSSEEEEEECSSSEEEEEEGG--------GTEEE
T ss_pred             eEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCC-CccCCcEEEEECCCCCEEEEECC--------CCEEE
Confidence            23333 35778887532      24689999866544444211 11112223333  5788887643        34678


Q ss_pred             EEECCCCceEEc
Q 018336          257 SYQLGTGEWKRA  268 (358)
Q Consensus       257 ~yd~~~~~W~~~  268 (358)
                      +||+.......+
T Consensus       189 ~~~~~g~~~~~~  200 (286)
T 1q7f_A          189 VFNYEGQYLRQI  200 (286)
T ss_dssp             EEETTCCEEEEE
T ss_pred             EEcCCCCEEEEE
Confidence            899866543433

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.91  E-value=0.76  Score=45.21  Aligned_cols=180  Identities=13%  Similarity=0.097  Sum_probs=98.4

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCC----CCC
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNM----PDN  176 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~----~~~  176 (358)
                      ..+..||+.++++..+......... ..-.+++.. ++.|++...         ..+++||+.+++|+.....    ..+
T Consensus       427 ~Gl~~~d~~~~~~~~~~~~~~~l~~-~~v~~i~~d~~g~lwigt~---------~Gl~~~~~~~~~~~~~~~~~~~~~~~  496 (795)
T 4a2l_A          427 GGLSILHRNSGQVENFNQRNSQLVN-ENVYAILPDGEGNLWLGTL---------SALVRFNPEQRSFTTIEKEKDGTPVV  496 (795)
T ss_dssp             TEEEEEETTTCCEEEECTTTSCCSC-SCEEEEEECSSSCEEEEES---------SCEEEEETTTTEEEECCBCTTCCBCC
T ss_pred             CceeEEeCCCCcEEEeecCCCCcCC-CeeEEEEECCCCCEEEEec---------CceeEEeCCCCeEEEccccccccccC
Confidence            3577889888887776532111100 111122222 466776542         2589999999999887532    111


Q ss_pred             cee-eeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCC---c-cCcCceeEEEE--CCEEEEEeCcccCCC
Q 018336          177 RSF-FAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM---T-QERDECEAVVI--GSEFWVVSGYKTERQ  248 (358)
Q Consensus       177 ~~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~---p-~~~~~~~~~~~--~~~lyv~gG~~~~~~  248 (358)
                      ... .+... -++.|++...        .-+.+||+.++.+ .+...   + .+-.....+..  +|.|++-..      
T Consensus       497 ~~~i~~i~~d~~g~lWigt~--------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~------  561 (795)
T 4a2l_A          497 SKQITTLFRDSHKRLWIGGE--------EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR------  561 (795)
T ss_dssp             CCCEEEEEECTTCCEEEEES--------SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES------
T ss_pred             CceEEEEEECCCCCEEEEeC--------CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC------
Confidence            111 12222 2466776532        2388999988888 43311   1 11111122222  566776542      


Q ss_pred             CceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEE-EeCCeEEEECCCCCCCCceE
Q 018336          249 GIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRV-ELGGCTLVTGSGYQGGPQEF  327 (358)
Q Consensus       249 ~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~-~~~~~i~v~gG~~~~~~~~i  327 (358)
                          ..+.+||+.++++.......  + .+-..                     ..+++ ..+|+|++.+.      +.+
T Consensus       562 ----~Gl~~~d~~~~~~~~~~~~~--g-l~~~~---------------------i~~i~~d~~g~lWi~t~------~Gl  607 (795)
T 4a2l_A          562 ----EGFYCFNEKDKQIKRYNTTN--G-LPNNV---------------------VYGILEDSFGRLWLSTN------RGI  607 (795)
T ss_dssp             ----SCEEEEETTTTEEEEECGGG--T-CSCSC---------------------EEEEEECTTSCEEEEET------TEE
T ss_pred             ----CCceeECCCCCcEEEeCCCC--C-Cchhh---------------------eEEEEECCCCCEEEEcC------Cce
Confidence                24678999999888765321  0 00000                     01122 23577877664      589


Q ss_pred             EEEECCCCceEee
Q 018336          328 YVVEGRNGKFRKF  340 (358)
Q Consensus       328 ~~yd~~~~~W~~~  340 (358)
                      .+||+++++++..
T Consensus       608 ~~~~~~~~~~~~~  620 (795)
T 4a2l_A          608 SCFNPETEKFRNF  620 (795)
T ss_dssp             EEEETTTTEEEEE
T ss_pred             EEEcCCCCcEEEc
Confidence            9999999988876

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.85  E-value=0.55  Score=46.10  Aligned_cols=180  Identities=8%  Similarity=0.050  Sum_probs=100.2

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCC-----C
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMP-----D  175 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-----~  175 (358)
                      ..+..||+.++++........+.   ..-.+++.. ++.|++...         .-+++||+.+++|+.....+     .
T Consensus       427 ~Gl~~~~~~~~~~~~~~~~~~~~---~~v~~i~~d~~g~lwigt~---------~Gl~~~~~~~~~~~~~~~~~~~~~~~  494 (781)
T 3v9f_A          427 GNISYYNTRLKKFQIIELEKNEL---LDVRVFYEDKNKKIWIGTH---------AGVFVIDLASKKVIHHYDTSNSQLLE  494 (781)
T ss_dssp             EEEEEECSSSCEEEECCSTTTCC---CCEEEEEECTTSEEEEEET---------TEEEEEESSSSSCCEEECTTTSSCSC
T ss_pred             CCEEEEcCCCCcEEEeccCCCCC---CeEEEEEECCCCCEEEEEC---------CceEEEeCCCCeEEecccCccccccc
Confidence            46788999888887775321111   111223333 567777532         36899999998887654322     1


Q ss_pred             CceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCcc-CcCceeEEEE--CCEEEEEeCcccCCCCce
Q 018336          176 NRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ-ERDECEAVVI--GSEFWVVSGYKTERQGIF  251 (358)
Q Consensus       176 ~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~~~~~~~~~~--~~~lyv~gG~~~~~~~~~  251 (358)
                      ... .+.+. -++.|++.. ..      .-+.+||+.+++++.+..... +-.....+..  +|.|++-..         
T Consensus       495 ~~i-~~i~~d~~g~lWigt-~~------~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~---------  557 (781)
T 3v9f_A          495 NFV-RSIAQDSEGRFWIGT-FG------GGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG---------  557 (781)
T ss_dssp             SCE-EEEEECTTCCEEEEE-SS------SCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET---------
T ss_pred             cee-EEEEEcCCCCEEEEE-cC------CCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC---------
Confidence            111 12222 246676642 21      238889999998887653111 1111112222  566777542         


Q ss_pred             eeee-EEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEE
Q 018336          252 DESA-ESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVV  330 (358)
Q Consensus       252 ~~~i-~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~y  330 (358)
                       ..+ .+||+.++++........ . ....                     ....+...+|+|++.+.      +.+.+|
T Consensus       558 -~Glv~~~d~~~~~~~~~~~~~g-l-~~~~---------------------i~~i~~d~~g~lW~~t~------~Gl~~~  607 (781)
T 3v9f_A          558 -EGLVCFPSARNFDYQVFQRKEG-L-PNTH---------------------IRAISEDKNGNIWASTN------TGISCY  607 (781)
T ss_dssp             -TEEEEESCTTTCCCEEECGGGT-C-SCCC---------------------CCEEEECSSSCEEEECS------SCEEEE
T ss_pred             -CCceEEECCCCCcEEEccccCC-C-CCce---------------------EEEEEECCCCCEEEEcC------CceEEE
Confidence             234 789999988877653210 0 0000                     11112334678887764      479999


Q ss_pred             ECCCCceEee
Q 018336          331 EGRNGKFRKF  340 (358)
Q Consensus       331 d~~~~~W~~~  340 (358)
                      |+.+++++..
T Consensus       608 ~~~~~~~~~~  617 (781)
T 3v9f_A          608 ITSKKCFYTY  617 (781)
T ss_dssp             ETTTTEEEEE
T ss_pred             ECCCCceEEe
Confidence            9999988776

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=95.82  E-value=0.25  Score=43.10  Aligned_cols=135  Identities=14%  Similarity=0.158  Sum_probs=68.7

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-C--CEEEEEcCcCCCCCCCcceeEEEECCCCcEEe---CCCCCCC
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-Q--GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR---GKNMPDN  176 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~--~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~---~~~~~~~  176 (358)
                      .+..||..+++|..+..+.....  . -.+++.. +  +.+++.|+.+       ..+.+||..+..-..   +.....+
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~--~-v~~~~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~~~~~~~~~~~  149 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSA--S-VNSVQWAPHEYGPLLLVASSD-------GKVSVVEFKENGTTSPIIIDAHAIG  149 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSS--C-EEEEEECCGGGCSEEEEEETT-------SEEEEEECCTTSCCCEEEEECCTTC
T ss_pred             EEEEEEcCCCceeEeeeecCCCc--c-eEEEEeCCCCCCCEEEEecCC-------CcEEEEecCCCCceeeEEecCCCCc
Confidence            57888988888766544433211  1 1122222 3  5566666542       368889987763211   1111111


Q ss_pred             ceeeeeEEE--------------CCEEEEEcCcCCCCCCCCeEEEEECCCCc--eEecCCCccCcCceeEEEE--C---C
Q 018336          177 RSFFAAGEL--------------NGRVIIAGGHDENKTALSSAWAYDLIKDE--WTELARMTQERDECEAVVI--G---S  235 (358)
Q Consensus       177 ~~~~~~~~~--------------~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~~~~~~~~~~--~---~  235 (358)
                      .  .+.+..              ++..++.|+.+.      .+.+||..++.  +.....+.........+.+  +   +
T Consensus       150 v--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  221 (379)
T 3jrp_A          150 V--NSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR  221 (379)
T ss_dssp             E--EEEEECCCC----------CTTCEEEEEETTS------CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS
T ss_pred             e--EEEEEcCccccccccccCCCCCCEEEEEeCCC------eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC
Confidence            1  111111              466777776543      48888876543  4444333322222222322  3   6


Q ss_pred             EEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          236 EFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       236 ~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      ++++.|+.+        ..+..||..+.
T Consensus       222 ~~l~s~~~d--------g~i~iwd~~~~  241 (379)
T 3jrp_A          222 SYLASVSQD--------RTCIIWTQDNE  241 (379)
T ss_dssp             EEEEEEETT--------SCEEEEEESST
T ss_pred             CeEEEEeCC--------CEEEEEeCCCC
Confidence            777777653        24677888765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=95.79  E-value=0.42  Score=40.93  Aligned_cols=97  Identities=8%  Similarity=0.016  Sum_probs=52.9

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-EC-CEEEEEcCcCCCCCCCcceeEEEECCCCcE--EeCCCCCCCc
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRW--TRGKNMPDNR  177 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W--~~~~~~~~~~  177 (358)
                      ..+..||+.+++.......+..     .. .++. -+ ..+|+.+..       ...++++|+.+.+.  ..+.....+.
T Consensus        20 ~~v~~~d~~~~~~~~~~~~~~~-----~~-~~~~s~dg~~l~~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~   86 (331)
T 3u4y_A           20 RRISFFSTDTLEILNQITLGYD-----FV-DTAITSDCSNVVVTSDF-------CQTLVQIETQLEPPKVVAIQEGQSSM   86 (331)
T ss_dssp             TEEEEEETTTCCEEEEEECCCC-----EE-EEEECSSSCEEEEEEST-------TCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred             CeEEEEeCcccceeeeEEccCC-----cc-eEEEcCCCCEEEEEeCC-------CCeEEEEECCCCceeEEecccCCCCc
Confidence            4789999999987655443321     11 2322 23 457777652       24799999988774  2222211121


Q ss_pred             eeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEe
Q 018336          178 SFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTE  217 (358)
Q Consensus       178 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~  217 (358)
                        ++.+..  +..+| ++....   ....+.+||..+++-..
T Consensus        87 --~~~~~s~dg~~l~-~~~~~~---~~~~i~v~d~~~~~~~~  122 (331)
T 3u4y_A           87 --ADVDITPDDQFAV-TVTGLN---HPFNMQSYSFLKNKFIS  122 (331)
T ss_dssp             --CCEEECTTSSEEE-ECCCSS---SSCEEEEEETTTTEEEE
T ss_pred             --cceEECCCCCEEE-EecCCC---CcccEEEEECCCCCeEE
Confidence              212222  34566 432111   12379999998876544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=95.71  E-value=0.26  Score=42.01  Aligned_cols=186  Identities=13%  Similarity=0.134  Sum_probs=92.7

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCC--Cce
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPD--NRS  178 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~--~~~  178 (358)
                      ..++.||+.++.-..... +.     . -.+++.. ++.+++..+         ..+++||+.+++++.+.....  +..
T Consensus        35 ~~i~~~d~~~~~~~~~~~-~~-----~-~~~i~~~~dG~l~v~~~---------~~l~~~d~~~g~~~~~~~~~~~~~~~   98 (297)
T 3g4e_A           35 KKVCRWDSFTKQVQRVTM-DA-----P-VSSVALRQSGGYVATIG---------TKFCALNWKEQSAVVLATVDNDKKNN   98 (297)
T ss_dssp             TEEEEEETTTCCEEEEEC-SS-----C-EEEEEEBTTSSEEEEET---------TEEEEEETTTTEEEEEEECCTTCSSE
T ss_pred             CEEEEEECCCCcEEEEeC-CC-----c-eEEEEECCCCCEEEEEC---------CeEEEEECCCCcEEEEEecCCCCCCC
Confidence            468899999876544321 22     1 1133333 566666532         379999999998877643321  222


Q ss_pred             eeeeEE--ECCEEEEEcCcCCC-----CCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CC-EEEEEeCcccCCC
Q 018336          179 FFAAGE--LNGRVIIAGGHDEN-----KTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GS-EFWVVSGYKTERQ  248 (358)
Q Consensus       179 ~~~~~~--~~~~iyv~GG~~~~-----~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~-~lyv~gG~~~~~~  248 (358)
                      ......  -++.+|+..-....     ......++.+++.. +...+..   .........+  ++ .+|+....     
T Consensus        99 ~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~---~~~~pngi~~spdg~~lyv~~~~-----  169 (297)
T 3g4e_A           99 RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFD---QVDISNGLDWSLDHKIFYYIDSL-----  169 (297)
T ss_dssp             EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEE---EESBEEEEEECTTSCEEEEEEGG-----
T ss_pred             CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEee---ccccccceEEcCCCCEEEEecCC-----
Confidence            222222  35777764311110     01234688888753 3333211   1111122332  44 48887643     


Q ss_pred             CceeeeeEEEEC--CCCceEEcC---CccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC
Q 018336          249 GIFDESAESYQL--GTGEWKRAE---NAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG  323 (358)
Q Consensus       249 ~~~~~~i~~yd~--~~~~W~~~~---~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~  323 (358)
                         ...|++||.  .++......   .++...    .                    .-...++..+|+||+.....   
T Consensus       170 ---~~~i~~~~~d~~~G~~~~~~~~~~~~~~~----~--------------------~p~g~~~d~~G~lwva~~~~---  219 (297)
T 3g4e_A          170 ---SYSVDAFDYDLQTGQISNRRSVYKLEKEE----Q--------------------IPDGMCIDAEGKLWVACYNG---  219 (297)
T ss_dssp             ---GTEEEEEEECTTTCCEEEEEEEEECCGGG----C--------------------EEEEEEEBTTSCEEEEEETT---
T ss_pred             ---CCcEEEEeccCCCCcccCcEEEEECCCCC----C--------------------CCCeeEECCCCCEEEEEcCC---
Confidence               235677775  555543211   111000    0                    00111233467888875322   


Q ss_pred             CceEEEEECCCCceEee-cCC
Q 018336          324 PQEFYVVEGRNGKFRKF-DVP  343 (358)
Q Consensus       324 ~~~i~~yd~~~~~W~~~-~~p  343 (358)
                       ..|.+||+++++.... .+|
T Consensus       220 -~~v~~~d~~tG~~~~~i~~p  239 (297)
T 3g4e_A          220 -GRVIRLDPVTGKRLQTVKLP  239 (297)
T ss_dssp             -TEEEEECTTTCCEEEEEECS
T ss_pred             -CEEEEEcCCCceEEEEEECC
Confidence             4799999997765443 666

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.61  E-value=0.34  Score=43.34  Aligned_cols=96  Identities=15%  Similarity=0.100  Sum_probs=57.8

Q ss_pred             eeEEEECCCCcEEeCCCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCcc---CcCceeEE
Q 018336          156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ---ERDECEAV  231 (358)
Q Consensus       156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~---~~~~~~~~  231 (358)
                      .++++|+.+.+++.+..++......+++.. ++.+++.++.+      ..+.+||+.+++.........   .......+
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~  175 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETI  175 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCcccccccCCceeEE
Confidence            789999987766665443333222223322 67888887543      349999999887765433221   11122223


Q ss_pred             EE--CCEEEEEeCcccCCCCceeeeeEEEECCCCce
Q 018336          232 VI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEW  265 (358)
Q Consensus       232 ~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W  265 (358)
                      .+  ++++|+.++..        ..+.+||+.+++-
T Consensus       176 ~~~~~~~~~~s~~~d--------~~v~~~d~~~~~~  203 (433)
T 3bws_A          176 SIPEHNELWVSQMQA--------NAVHVFDLKTLAY  203 (433)
T ss_dssp             EEGGGTEEEEEEGGG--------TEEEEEETTTCCE
T ss_pred             EEcCCCEEEEEECCC--------CEEEEEECCCceE
Confidence            33  77888887642        3678899987653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.59  E-value=0.81  Score=37.91  Aligned_cols=190  Identities=9%  Similarity=-0.064  Sum_probs=94.3

Q ss_pred             eEEEEeCCC-CCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336          103 GVTVFDPVS-LTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~  181 (358)
                      .+..+|..+ ++...+.......   ........-++..+++++....   ....+|.+|..+...+.+.....   ...
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~---~~~  133 (297)
T 2ojh_A           63 LLYRLSLAGDPSPEKVDTGFATI---CNNDHGISPDGALYAISDKVEF---GKSAIYLLPSTGGTPRLMTKNLP---SYW  133 (297)
T ss_dssp             EEEEEESSSCCSCEECCCTTCCC---BCSCCEECTTSSEEEEEECTTT---SSCEEEEEETTCCCCEECCSSSS---EEE
T ss_pred             eEEEEeCCCCCCceEeccccccc---cccceEECCCCCEEEEEEeCCC---CcceEEEEECCCCceEEeecCCC---ccc
Confidence            688899988 7766654332111   1111222234544444442211   14589999988877655543322   122


Q ss_pred             eEEE-CC-EEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE-EECCE-EEEEeCcccCCCCceeeeeEE
Q 018336          182 AGEL-NG-RVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV-VIGSE-FWVVSGYKTERQGIFDESAES  257 (358)
Q Consensus       182 ~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~-lyv~gG~~~~~~~~~~~~i~~  257 (358)
                      .+.. ++ .+++.++.+.    ...++.++..++....+...+...  .... .-+++ |++.+....      ...++.
T Consensus       134 ~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~s~dg~~l~~~~~~~~------~~~i~~  201 (297)
T 2ojh_A          134 HGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTHGEGRN--DGPDYSPDGRWIYFNSSRTG------QMQIWR  201 (297)
T ss_dssp             EEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCCSSSCE--EEEEECTTSSEEEEEECTTS------SCEEEE
T ss_pred             eEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcccCCCcc--ccceECCCCCEEEEEecCCC------CccEEE
Confidence            2222 33 4555544322    135777778777776655433211  1122 22555 444443221      335677


Q ss_pred             EECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCC-------CCceEEEE
Q 018336          258 YQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQG-------GPQEFYVV  330 (358)
Q Consensus       258 yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~-------~~~~i~~y  330 (358)
                      ++...+....+.....       .                    ........+++.+++++....       ....++++
T Consensus       202 ~~~~~~~~~~~~~~~~-------~--------------------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~  254 (297)
T 2ojh_A          202 VRVDGSSVERITDSAY-------G--------------------DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLM  254 (297)
T ss_dssp             EETTSSCEEECCCCSE-------E--------------------EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEE
T ss_pred             ECCCCCCcEEEecCCc-------c--------------------cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEE
Confidence            7777766655543210       0                    001122335555555443211       11579999


Q ss_pred             ECCCCceEee
Q 018336          331 EGRNGKFRKF  340 (358)
Q Consensus       331 d~~~~~W~~~  340 (358)
                      |..+++...+
T Consensus       255 d~~~~~~~~~  264 (297)
T 2ojh_A          255 DMDGGNVETL  264 (297)
T ss_dssp             ETTSCSCEEE
T ss_pred             ecCCCCceee
Confidence            9998877666

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=95.58  E-value=1.2  Score=39.96  Aligned_cols=105  Identities=17%  Similarity=0.282  Sum_probs=56.2

Q ss_pred             EECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          135 SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       135 ~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ..++..++.|+.+       ..+.+||..+.+-...  +............++..++.|+.+      ..+.+||..++.
T Consensus       246 ~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d------~~i~i~d~~~~~  310 (445)
T 2ovr_B          246 QYDGRRVVSGAYD-------FMVKVWDPETETCLHT--LQGHTNRVYSLQFDGIHVVSGSLD------TSIRVWDVETGN  310 (445)
T ss_dssp             EECSSCEEEEETT-------SCEEEEEGGGTEEEEE--ECCCSSCEEEEEECSSEEEEEETT------SCEEEEETTTCC
T ss_pred             EECCCEEEEEcCC-------CEEEEEECCCCcEeEE--ecCCCCceEEEEECCCEEEEEeCC------CeEEEEECCCCC
Confidence            3366666666543       3688899877653221  111111122223366666776654      348999998765


Q ss_pred             eEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          215 WTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       215 W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      -...  +.........+..++.+++.|+.+        ..+..||..+++
T Consensus       311 ~~~~--~~~~~~~v~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~  350 (445)
T 2ovr_B          311 CIHT--LTGHQSLTSGMELKDNILVSGNAD--------STVKIWDIKTGQ  350 (445)
T ss_dssp             EEEE--ECCCCSCEEEEEEETTEEEEEETT--------SCEEEEETTTCC
T ss_pred             EEEE--EcCCcccEEEEEEeCCEEEEEeCC--------CeEEEEECCCCc
Confidence            3321  111122223344566666666543        356788887664

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.58  E-value=1.6  Score=42.08  Aligned_cols=119  Identities=17%  Similarity=0.157  Sum_probs=72.9

Q ss_pred             EEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCC--------ceeeeeEEECCEEEEEcCcCCCCCCC
Q 018336          133 VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDN--------RSFFAAGELNGRVIIAGGHDENKTAL  202 (358)
Q Consensus       133 ~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~--------~~~~~~~~~~~~iyv~GG~~~~~~~~  202 (358)
                      .++.++.||+...        ...++.+|..|.+  |+.-...+..        ....+.++.++.||+...       -
T Consensus        73 P~v~~g~vyv~~~--------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------d  137 (677)
T 1kb0_A           73 PVVVDGIMYVSAS--------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------D  137 (677)
T ss_dssp             CEEETTEEEEECG--------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------T
T ss_pred             CEEECCEEEEECC--------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------C
Confidence            3457999999865        3478999988764  8765432211        112345567889988732       2


Q ss_pred             CeEEEEECCCCc--eEecCC--Ccc-CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc--eEEcC
Q 018336          203 SSAWAYDLIKDE--WTELAR--MTQ-ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE--WKRAE  269 (358)
Q Consensus       203 ~~~~~yd~~t~~--W~~~~~--~p~-~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~~~  269 (358)
                      ..++++|..+++  |+.-..  .+. .......++.++.+|+..+....   .....+.+||..+++  |+.-.
T Consensus       138 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~---~~~g~v~a~D~~tG~~~W~~~~  208 (677)
T 1kb0_A          138 GRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY---GVRGYITAYDAETGERKWRWFS  208 (677)
T ss_dssp             SEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT---CCBCEEEEEETTTCCEEEEEES
T ss_pred             CEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccccc---CCCCEEEEEECCCCcEEEEecc
Confidence            469999998764  875432  111 11222345678888876532211   124578999999875  87644

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.57  E-value=0.87  Score=38.10  Aligned_cols=137  Identities=9%  Similarity=0.036  Sum_probs=73.6

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      ..+..||+. ++...+.. +...   .....++. .++.+|+....       ...+.+||+. .++...........-.
T Consensus        41 ~~v~~~~~~-~~~~~~~~-~~~~---~~~~~i~~~~~g~l~v~~~~-------~~~v~~~d~~-g~~~~~~~~~~~~~~~  107 (300)
T 2qc5_A           41 NKISSLDQS-GRIKEFEV-PTPD---AKVMCLIVSSLGDIWFTENG-------ANKIGKLSKK-GGFTEYPLPQPDSGPY  107 (300)
T ss_dssp             TEEEEECTT-SCEEEEEC-SSTT---CCEEEEEECTTSCEEEEETT-------TTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred             CeEEEECCC-CceEEEEC-CCCC---CcceeEEECCCCCEEEEecC-------CCeEEEECCC-CCeEEecCCCCCCCCc
Confidence            368889988 77665432 2111   11223333 35778887532       2469999988 6665442211112223


Q ss_pred             eeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEE
Q 018336          181 AAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAES  257 (358)
Q Consensus       181 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~  257 (358)
                      +++.. ++.+|+....      ...+..||+. ++..... ++........+.+  ++++|+....        ...+.+
T Consensus       108 ~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~--------~~~i~~  171 (300)
T 2qc5_A          108 GITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ--------NNSIGR  171 (300)
T ss_dssp             EEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT--------TTEEEE
T ss_pred             cceECCCCCEEEEccC------CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC--------CCeEEE
Confidence            33332 5788887432      2468899987 6655432 2211122222333  5778887532        235788


Q ss_pred             EECCCCceEEc
Q 018336          258 YQLGTGEWKRA  268 (358)
Q Consensus       258 yd~~~~~W~~~  268 (358)
                      ||+ +++...+
T Consensus       172 ~~~-~g~~~~~  181 (300)
T 2qc5_A          172 ITN-TGKLEEY  181 (300)
T ss_dssp             ECT-TCCEEEE
T ss_pred             ECC-CCcEEEe
Confidence            988 6666653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.50  E-value=0.62  Score=39.68  Aligned_cols=179  Identities=12%  Similarity=0.060  Sum_probs=88.5

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      ..+..||..+.+......+.....  . -..++.. ++..++.|+.+       ..+.+||..+.+....-...... -.
T Consensus       119 ~~i~~~d~~~~~~~~~~~~~~~~~--~-i~~~~~~~~~~~l~~~~~d-------g~v~~~d~~~~~~~~~~~~~~~~-i~  187 (337)
T 1gxr_A          119 STLSIWDLAAPTPRIKAELTSSAP--A-CYALAISPDSKVCFSCCSD-------GNIAVWDLHNQTLVRQFQGHTDG-AS  187 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECSSS--C-EEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEECCCSSC-EE
T ss_pred             CcEEEEECCCCCcceeeecccCCC--c-eEEEEECCCCCEEEEEeCC-------CcEEEEeCCCCceeeeeecccCc-eE
Confidence            367888988877443332222111  1 1122222 45566666532       36899999887643321111111 11


Q ss_pred             eeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE-EECCEEEEEeCcccCCCCceeeeeEEE
Q 018336          181 AAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV-VIGSEFWVVSGYKTERQGIFDESAESY  258 (358)
Q Consensus       181 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~y  258 (358)
                      +.+. -++..++.|+.+      ..+.+||..+.+-...-..+..  ...+. .-+++++++|+..        ..+..|
T Consensus       188 ~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~~--------~~i~~~  251 (337)
T 1gxr_A          188 CIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDFTSQ--IFSLGYCPTGEWLAVGMES--------SNVEVL  251 (337)
T ss_dssp             EEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECSSC--EEEEEECTTSSEEEEEETT--------SCEEEE
T ss_pred             EEEECCCCCEEEEEecC------CcEEEEECCCCceEeeecCCCc--eEEEEECCCCCEEEEEcCC--------CcEEEE
Confidence            2222 255566665533      4689999987654332222111  11222 2356666766542        357889


Q ss_pred             ECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceE
Q 018336          259 QLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFR  338 (358)
Q Consensus       259 d~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~  338 (358)
                      |..+.+-..+....    .  ..                     .......++++++.++.+    ..+.+||..+++-.
T Consensus       252 ~~~~~~~~~~~~~~----~--~v---------------------~~~~~~~~~~~l~~~~~d----g~i~~~~~~~~~~~  300 (337)
T 1gxr_A          252 HVNKPDKYQLHLHE----S--CV---------------------LSLKFAYCGKWFVSTGKD----NLLNAWRTPYGASI  300 (337)
T ss_dssp             ETTSSCEEEECCCS----S--CE---------------------EEEEECTTSSEEEEEETT----SEEEEEETTTCCEE
T ss_pred             ECCCCCeEEEcCCc----c--ce---------------------eEEEECCCCCEEEEecCC----CcEEEEECCCCeEE
Confidence            98876533222110    0  00                     011223356777777654    57888888876643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.49  E-value=0.69  Score=39.40  Aligned_cols=105  Identities=16%  Similarity=0.231  Sum_probs=54.7

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee-eeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF-AAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++..++.|+.+       ..+.+||..+.+......+....... ..+.. ++..++.|+.+      ..+.+||..+++
T Consensus       108 ~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~  174 (337)
T 1gxr_A          108 DGCTLIVGGEA-------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQT  174 (337)
T ss_dssp             TSSEEEEEESS-------SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTE
T ss_pred             CCCEEEEEcCC-------CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCc
Confidence            45556666532       47999999887754332222211111 22222 45566666543      358999998875


Q ss_pred             eEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          215 WTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       215 W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      ....-  .........+.+  +++.++.++.        ...+..||..+.+
T Consensus       175 ~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~--------dg~i~~~d~~~~~  216 (337)
T 1gxr_A          175 LVRQF--QGHTDGASCIDISNDGTKLWTGGL--------DNTVRSWDLREGR  216 (337)
T ss_dssp             EEEEE--CCCSSCEEEEEECTTSSEEEEEET--------TSEEEEEETTTTE
T ss_pred             eeeee--ecccCceEEEEECCCCCEEEEEec--------CCcEEEEECCCCc
Confidence            43321  111112222233  5666666654        2357889988764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.46  E-value=1.1  Score=40.00  Aligned_cols=145  Identities=12%  Similarity=0.034  Sum_probs=73.1

Q ss_pred             eEEEEeCCCCCeeecCCCCCC-CCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEY-PAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~-~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      .+..||..+++.......... .+. ..-..++. .++.+++.++.       ...+.+||..+.+....-.... ..-.
T Consensus       145 ~i~~~d~~~g~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~s~~~-------d~~v~~~d~~~~~~~~~~~~~~-~~~~  215 (433)
T 3bws_A          145 GMDVLDINSGQTVRLSPPEKYKKKL-GFVETISIPEHNELWVSQMQ-------ANAVHVFDLKTLAYKATVDLTG-KWSK  215 (433)
T ss_dssp             SEEEEETTTCCEEEECCCHHHHTTC-CEEEEEEEGGGTEEEEEEGG-------GTEEEEEETTTCCEEEEEECSS-SSEE
T ss_pred             eEEEEECCCCeEeeecCcccccccC-CceeEEEEcCCCEEEEEECC-------CCEEEEEECCCceEEEEEcCCC-CCee
Confidence            588899998877654332110 000 01112222 26788888763       2479999998765432211111 1112


Q ss_pred             eeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeE
Q 018336          181 AAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAE  256 (358)
Q Consensus       181 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~  256 (358)
                      ..+..  +..+|+.++.+      ..+.+||+.+++....-...  .. ...+.+  +++.+++++............+.
T Consensus       216 ~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~--~~-~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~  286 (433)
T 3bws_A          216 ILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKTDKI--GL-PRGLLLSKDGKELYIAQFSASNQESGGGRLG  286 (433)
T ss_dssp             EEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEECCCC--SE-EEEEEECTTSSEEEEEEEESCTTCSCCEEEE
T ss_pred             EEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEecCC--CC-ceEEEEcCCCCEEEEEECCCCccccCCCeEE
Confidence            22222  45677775432      36999999887654332221  11 222222  55554454432211000134788


Q ss_pred             EEECCCCce
Q 018336          257 SYQLGTGEW  265 (358)
Q Consensus       257 ~yd~~~~~W  265 (358)
                      +||+.+++-
T Consensus       287 ~~d~~~~~~  295 (433)
T 3bws_A          287 IYSMDKEKL  295 (433)
T ss_dssp             EEETTTTEE
T ss_pred             EEECCCCcE
Confidence            999987754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=95.42  E-value=0.42  Score=40.55  Aligned_cols=142  Identities=10%  Similarity=0.025  Sum_probs=71.7

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-EC-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeC-CCCCCC--c
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRG-KNMPDN--R  177 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~--~  177 (358)
                      .+..||+.++++..+......... .....++. .+ +.+|+...        .+.+++||+. ++...+ ......  .
T Consensus        47 ~i~~~d~~~g~~~~~~~~~~~~~~-~~~~~i~~~~~~g~l~v~~~--------~~~l~~~d~~-g~~~~~~~~~~~~~~~  116 (314)
T 1pjx_A           47 EILRIDLKTGKKTVICKPEVNGYG-GIPAGCQCDRDANQLFVADM--------RLGLLVVQTD-GTFEEIAKKDSEGRRM  116 (314)
T ss_dssp             EEEEECTTTCCEEEEECCEETTEE-CCEEEEEECSSSSEEEEEET--------TTEEEEEETT-SCEEECCSBCTTSCBC
T ss_pred             EEEEEeCCCCcEEEEEecccCCCC-CCCceEEEecCCCcEEEEEC--------CCCEEEEeCC-CCEEEEEeccCCCccc
Confidence            688999988888765331000000 01123333 24 78888764        1369999998 777665 332211  1


Q ss_pred             e-eeeeEE-ECCEEEEEcCcCC---------CCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE-----CC-EEEEE
Q 018336          178 S-FFAAGE-LNGRVIIAGGHDE---------NKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI-----GS-EFWVV  240 (358)
Q Consensus       178 ~-~~~~~~-~~~~iyv~GG~~~---------~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-----~~-~lyv~  240 (358)
                      . -...+. -++.+|+......         .......++.||+. ++...+..-  ......++..     ++ .+|+.
T Consensus       117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~~~~i~~~~~~d~dg~~l~v~  193 (314)
T 1pjx_A          117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQFPNGIAVRHMNDGRPYQLIVA  193 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ESSEEEEEEEECTTSCEEEEEEE
T ss_pred             cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CCCcceEEEecccCCCCCEEEEE
Confidence            1 122222 3578888754220         11112468889887 555543211  0111223333     34 46776


Q ss_pred             eCcccCCCCceeeeeEEEECC-CCce
Q 018336          241 SGYKTERQGIFDESAESYQLG-TGEW  265 (358)
Q Consensus       241 gG~~~~~~~~~~~~i~~yd~~-~~~W  265 (358)
                      ...        ...+.+||+. +++.
T Consensus       194 ~~~--------~~~i~~~~~~~~g~~  211 (314)
T 1pjx_A          194 ETP--------TKKLWSYDIKGPAKI  211 (314)
T ss_dssp             ETT--------TTEEEEEEEEETTEE
T ss_pred             ECC--------CCeEEEEECCCCCcc
Confidence            532        2357788875 4443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=95.29  E-value=0.26  Score=42.76  Aligned_cols=147  Identities=10%  Similarity=0.040  Sum_probs=74.4

Q ss_pred             cceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee-
Q 018336          101 SYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF-  179 (358)
Q Consensus       101 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~-  179 (358)
                      ...++.+|+.++++..+........  +.. .+..-+++||+.+....     ...+++||..+.+++.+..+...... 
T Consensus        17 ~i~v~~~d~~tg~~~~~~~~~~~~~--p~~-~a~spdg~l~~~~~~~~-----~~~v~~~~~~~g~~~~~~~~~~~~~~p   88 (347)
T 3hfq_A           17 GIYQGTLDTTAKTLTNDGLLAATQN--PTY-LALSAKDCLYSVDKEDD-----EGGIAAWQIDGQTAHKLNTVVAPGTPP   88 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEECSC--CCC-EEECTTCEEEEEEEETT-----EEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred             CEEEEEEcCCCCeEEEeeeeeccCC--cce-EEEccCCeEEEEEecCC-----CceEEEEEecCCcEEEeeeeecCCCCC
Confidence            3568888998888766432211110  111 22233677887764211     35799999988877665432211111 


Q ss_pred             eeeEE-ECC-EEEEEcCcCCCCCCCCeEEEEECC-CCceEecCCCcc------Cc---Ccee-EE-EECCEEEEEeCccc
Q 018336          180 FAAGE-LNG-RVIIAGGHDENKTALSSAWAYDLI-KDEWTELARMTQ------ER---DECE-AV-VIGSEFWVVSGYKT  245 (358)
Q Consensus       180 ~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~p~------~~---~~~~-~~-~~~~~lyv~gG~~~  245 (358)
                      ..++. -++ .+|+.+..      ...+.+|+.. ++..+.+.....      .+   .... ++ .-+|++|+.+..  
T Consensus        89 ~~~a~spdg~~l~~~~~~------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~--  160 (347)
T 3hfq_A           89 AYVAVDEARQLVYSANYH------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG--  160 (347)
T ss_dssp             SEEEEETTTTEEEEEETT------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT--
T ss_pred             EEEEECCCCCEEEEEeCC------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC--
Confidence            12222 244 57766421      2457888874 444443332211      01   0111 22 236777776532  


Q ss_pred             CCCCceeeeeEEEECC-CCceEEcC
Q 018336          246 ERQGIFDESAESYQLG-TGEWKRAE  269 (358)
Q Consensus       246 ~~~~~~~~~i~~yd~~-~~~W~~~~  269 (358)
                            ...+.+||.. +++...+.
T Consensus       161 ------~~~v~~~~~~~~g~~~~~~  179 (347)
T 3hfq_A          161 ------SDKVYVYNVSDAGQLSEQS  179 (347)
T ss_dssp             ------TTEEEEEEECTTSCEEEEE
T ss_pred             ------CCEEEEEEECCCCcEEEee
Confidence                  2357788887 56655443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=95.28  E-value=1.2  Score=37.79  Aligned_cols=133  Identities=17%  Similarity=0.270  Sum_probs=67.3

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFF  180 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~  180 (358)
                      .+..||..+++....-.-...    .. ..++. -++.+++.|+.+       ..+.+||..+.+-.. +..-. .. -.
T Consensus        46 ~i~iw~~~~~~~~~~~~~h~~----~v-~~~~~~~~~~~l~s~~~d-------~~i~vwd~~~~~~~~~~~~~~-~~-v~  111 (312)
T 4ery_A           46 LIKIWGAYDGKFEKTISGHKL----GI-SDVAWSSDSNLLVSASDD-------KTLKIWDVSSGKCLKTLKGHS-NY-VF  111 (312)
T ss_dssp             CEEEEETTTCCEEEEECCCSS----CE-EEEEECTTSSEEEEEETT-------SEEEEEETTTCCEEEEEECCS-SC-EE
T ss_pred             eEEEEeCCCcccchhhccCCC----ce-EEEEEcCCCCEEEEECCC-------CEEEEEECCCCcEEEEEcCCC-CC-EE
Confidence            577788877766443211110    11 12222 255666666643       378999988765322 11100 01 11


Q ss_pred             eeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEE
Q 018336          181 AAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAES  257 (358)
Q Consensus       181 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~  257 (358)
                      +.+. -++.+++.|+.+.      .+.+||..+++-..  .++........+.+  ++++++.|+.+        ..+..
T Consensus       112 ~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~  175 (312)
T 4ery_A          112 CCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDGSLIVSSSYD--------GLCRI  175 (312)
T ss_dssp             EEEECSSSSEEEEEETTS------CEEEEETTTCCEEE--EECCCSSCEEEEEECTTSSEEEEEETT--------SCEEE
T ss_pred             EEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEE--EecCCCCcEEEEEEcCCCCEEEEEeCC--------CcEEE
Confidence            1111 2455666666543      48999998765322  11111111222222  56677777653        35678


Q ss_pred             EECCCCce
Q 018336          258 YQLGTGEW  265 (358)
Q Consensus       258 yd~~~~~W  265 (358)
                      ||..+++-
T Consensus       176 wd~~~~~~  183 (312)
T 4ery_A          176 WDTASGQC  183 (312)
T ss_dssp             EETTTCCE
T ss_pred             EECCCCce
Confidence            99887654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=95.24  E-value=0.49  Score=41.11  Aligned_cols=97  Identities=14%  Similarity=0.204  Sum_probs=51.3

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCC-CCcee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMP-DNRSF  179 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~~~~  179 (358)
                      ..+..||..++++..+..+.....  ... +++.. ++.+++.|+.+       ..+.+||..+.++.....+. ....-
T Consensus        30 ~~v~i~~~~~~~~~~~~~~~~h~~--~v~-~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~v   99 (372)
T 1k8k_C           30 HEVHIYEKSGNKWVQVHELKEHNG--QVT-GVDWAPDSNRIVTCGTD-------RNAYVWTLKGRTWKPTLVILRINRAA   99 (372)
T ss_dssp             SEEEEEEEETTEEEEEEEEECCSS--CEE-EEEEETTTTEEEEEETT-------SCEEEEEEETTEEEEEEECCCCSSCE
T ss_pred             CEEEEEeCCCCcEEeeeeecCCCC--ccc-EEEEeCCCCEEEEEcCC-------CeEEEEECCCCeeeeeEEeecCCCce
Confidence            368889998887655544432211  111 23322 56666666532       36899999888765432221 11111


Q ss_pred             eeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          180 FAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       180 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      .+++. -++..++.|+.+      ..+.+||..+..
T Consensus       100 ~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~  129 (372)
T 1k8k_C          100 RCVRWAPNEKKFAVGSGS------RVISICYFEQEN  129 (372)
T ss_dssp             EEEEECTTSSEEEEEETT------SSEEEEEEETTT
T ss_pred             eEEEECCCCCEEEEEeCC------CEEEEEEecCCC
Confidence            22222 245566666543      347777776543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=95.24  E-value=1.3  Score=37.98  Aligned_cols=141  Identities=9%  Similarity=0.024  Sum_probs=73.4

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFF  180 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~  180 (358)
                      .+..||+.+++...+...+.     ..-.+++. -++.+|+.......   ....+++||+.+...+. +........-.
T Consensus        67 ~i~~~d~~~~~~~~~~~~~~-----~~~~~i~~~~dg~l~v~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  138 (333)
T 2dg1_A           67 NIFKINPETKEIKRPFVSHK-----ANPAAIKIHKDGRLFVCYLGDFK---STGGIFAATENGDNLQDIIEDLSTAYCID  138 (333)
T ss_dssp             EEEEECTTTCCEEEEEECSS-----SSEEEEEECTTSCEEEEECTTSS---SCCEEEEECTTSCSCEEEECSSSSCCCEE
T ss_pred             EEEEEeCCCCcEEEEeeCCC-----CCcceEEECCCCcEEEEeCCCCC---CCceEEEEeCCCCEEEEEEccCccCCccc
Confidence            68899999888766532111     01123333 36678877542211   12479999998887653 22211111112


Q ss_pred             eeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CC-EEEEEeCcccCCCCceeeeeE
Q 018336          181 AAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GS-EFWVVSGYKTERQGIFDESAE  256 (358)
Q Consensus       181 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~-~lyv~gG~~~~~~~~~~~~i~  256 (358)
                      ..+. -++.+|+.............++.||+.+++.+.+..-   ......+.+  ++ .+|+....        ...+.
T Consensus       139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~~--------~~~i~  207 (333)
T 2dg1_A          139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKVLWVTETT--------ANRLH  207 (333)
T ss_dssp             EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSEEEEEEGG--------GTEEE
T ss_pred             ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC---CCcccceEECCCCCEEEEEeCC--------CCeEE
Confidence            2222 2577887643211111235789999887776654311   111122222  44 47776532        23678


Q ss_pred             EEECCC
Q 018336          257 SYQLGT  262 (358)
Q Consensus       257 ~yd~~~  262 (358)
                      +||+.+
T Consensus       208 ~~d~~~  213 (333)
T 2dg1_A          208 RIALED  213 (333)
T ss_dssp             EEEECT
T ss_pred             EEEecC
Confidence            888864

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.20  E-value=1.5  Score=42.91  Aligned_cols=186  Identities=13%  Similarity=0.122  Sum_probs=93.9

Q ss_pred             eEEEEeCCCCCeeecCCCCC--CCCCCC--ceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCC---CC
Q 018336          103 GVTVFDPVSLTWDRLGPVPE--YPAGLP--LFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKN---MP  174 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~--~~~~~~--~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~---~~  174 (358)
                      .+..|++.+..+......+.  ......  .-.+++.. ++.|++-..        ..-+.+||+.+++++....   ++
T Consensus       334 Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~--------~~Gl~~~~~~~~~~~~~~~~~~~~  405 (781)
T 3v9f_A          334 GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTD--------GGGINVFENGKRVAIYNKENRELL  405 (781)
T ss_dssp             CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEB--------SSCEEEEETTEEEEECC-----CC
T ss_pred             eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeC--------CCcEEEEECCCCeEEEccCCCCCC
Confidence            46667777776665532211  000101  11122222 467776531        1248899998887776531   11


Q ss_pred             CCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCce
Q 018336          175 DNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIF  251 (358)
Q Consensus       175 ~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~  251 (358)
                      .. .-.+.+.. ++.|++ |...      .-+..||+.+++++.+............+..  +|.|++-..         
T Consensus       406 ~~-~v~~i~~d~~g~lWi-gt~~------~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~---------  468 (781)
T 3v9f_A          406 SN-SVLCSLKDSEGNLWF-GTYL------GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH---------  468 (781)
T ss_dssp             CS-BEEEEEECTTSCEEE-EETT------EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET---------
T ss_pred             Cc-ceEEEEECCCCCEEE-Eecc------CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC---------
Confidence            11 11222222 566766 3221      3589999999999887632111111122222  466776531         


Q ss_pred             eeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEE
Q 018336          252 DESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVE  331 (358)
Q Consensus       252 ~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd  331 (358)
                       ..+.+||+.+++|..+....... .....                    ....+...+++|+|-...     ..+++||
T Consensus       469 -~Gl~~~~~~~~~~~~~~~~~~~~-~~~~~--------------------i~~i~~d~~g~lWigt~~-----~Gl~~~~  521 (781)
T 3v9f_A          469 -AGVFVIDLASKKVIHHYDTSNSQ-LLENF--------------------VRSIAQDSEGRFWIGTFG-----GGVGIYT  521 (781)
T ss_dssp             -TEEEEEESSSSSCCEEECTTTSS-CSCSC--------------------EEEEEECTTCCEEEEESS-----SCEEEEC
T ss_pred             -CceEEEeCCCCeEEecccCcccc-cccce--------------------eEEEEEcCCCCEEEEEcC-----CCEEEEe
Confidence             24688999998887665332100 00000                    011123345677664321     3688888


Q ss_pred             CCCCceEee
Q 018336          332 GRNGKFRKF  340 (358)
Q Consensus       332 ~~~~~W~~~  340 (358)
                      +.+++++..
T Consensus       522 ~~~~~~~~~  530 (781)
T 3v9f_A          522 PDMQLVRKF  530 (781)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCCeEEEc
Confidence            888888776

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=95.05  E-value=1.2  Score=36.85  Aligned_cols=180  Identities=7%  Similarity=-0.125  Sum_probs=95.7

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF  179 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~  179 (358)
                      ..+..+|+....-..+.....     .....++..  ++.||+....       ...+.++|+....-+.+........ 
T Consensus        58 ~~I~~~~~~g~~~~~~~~~~~-----~~p~~ia~d~~~~~lyv~d~~-------~~~I~~~~~~g~~~~~~~~~~~~~P-  124 (267)
T 1npe_A           58 PSIGRASLHGGEPTTIIRQDL-----GSPEGIALDHLGRTIFWTDSQ-------LDRIEVAKMDGTQRRVLFDTGLVNP-  124 (267)
T ss_dssp             TEEEEEESSSCCCEEEECTTC-----CCEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEECSSCSSE-
T ss_pred             CEEEEEecCCCCcEEEEECCC-----CCccEEEEEecCCeEEEEECC-------CCEEEEEEcCCCCEEEEEECCCCCc-
Confidence            368888887654333221111     112244443  6799998642       3578999987544333322111121 


Q ss_pred             eeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE---CCEEEEEeCcccCCCCceeee
Q 018336          180 FAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI---GSEFWVVSGYKTERQGIFDES  254 (358)
Q Consensus       180 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~---~~~lyv~gG~~~~~~~~~~~~  254 (358)
                      ...+..  ++.+|+.....    ....++++++....-+.+....  ......+.+   +++||+....        .+.
T Consensus       125 ~~i~vd~~~g~lyv~~~~~----~~~~I~~~~~dg~~~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~--------~~~  190 (267)
T 1npe_A          125 RGIVTDPVRGNLYWTDWNR----DNPKIETSHMDGTNRRILAQDN--LGLPNGLTFDAFSSQLCWVDAG--------THR  190 (267)
T ss_dssp             EEEEEETTTTEEEEEECCS----SSCEEEEEETTSCCCEEEECTT--CSCEEEEEEETTTTEEEEEETT--------TTE
T ss_pred             cEEEEeeCCCEEEEEECCC----CCcEEEEEecCCCCcEEEEECC--CCCCcEEEEcCCCCEEEEEECC--------CCE
Confidence            233332  68999985321    1257888888654333332111  112223333   4679998643        346


Q ss_pred             eEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCC
Q 018336          255 AESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRN  334 (358)
Q Consensus       255 i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~  334 (358)
                      |.+||+....-..+...   .                         ....+++..++.||+.....    +.|.++|+.+
T Consensus       191 I~~~~~~g~~~~~~~~~---~-------------------------~~P~gi~~d~~~lyva~~~~----~~v~~~d~~~  238 (267)
T 1npe_A          191 AECLNPAQPGRRKVLEG---L-------------------------QYPFAVTSYGKNLYYTDWKT----NSVIAMDLAI  238 (267)
T ss_dssp             EEEEETTEEEEEEEEEC---C-------------------------CSEEEEEEETTEEEEEETTT----TEEEEEETTT
T ss_pred             EEEEecCCCceEEEecC---C-------------------------CCceEEEEeCCEEEEEECCC----CeEEEEeCCC
Confidence            88899875422211110   0                         01123455689999975433    6899999998


Q ss_pred             CceEee
Q 018336          335 GKFRKF  340 (358)
Q Consensus       335 ~~W~~~  340 (358)
                      ++-...
T Consensus       239 g~~~~~  244 (267)
T 1npe_A          239 SKEMDT  244 (267)
T ss_dssp             TEEEEE
T ss_pred             CCceEE
Confidence            765433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=95.03  E-value=1.3  Score=36.96  Aligned_cols=136  Identities=6%  Similarity=-0.053  Sum_probs=72.5

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~  181 (358)
                      .+..||+. ++...+. ++...   .....++.. ++.+|+....       ...+++||+ +.+..............+
T Consensus        79 ~i~~~~~~-g~~~~~~-~~~~~---~~~~~i~~~~~g~l~v~~~~-------~~~i~~~d~-~g~~~~~~~~~~~~~~~~  145 (299)
T 2z2n_A           79 KIGRITKK-GIIKEYT-LPNPD---SAPYGITEGPNGDIWFTEMN-------GNRIGRITD-DGKIREYELPNKGSYPSF  145 (299)
T ss_dssp             EEEEECTT-SCEEEEE-CSSTT---CCEEEEEECTTSCEEEEETT-------TTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred             eEEEECCC-CcEEEEe-CCCcC---CCceeeEECCCCCEEEEecC-------CceEEEECC-CCCEEEecCCCCCCCCce
Confidence            57888886 4554443 12111   112234433 5788887532       247899999 666654321111112223


Q ss_pred             eEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEE
Q 018336          182 AGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESY  258 (358)
Q Consensus       182 ~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~y  258 (358)
                      .+.. ++.+|+....      ...+.+||+ +++...+. .+........+.+  +|++|+....        ...+.+|
T Consensus       146 i~~~~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~--------~~~i~~~  209 (299)
T 2z2n_A          146 ITLGSDNALWFTENQ------NNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVEII--------GNKIGRI  209 (299)
T ss_dssp             EEECTTSCEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT--------TTEEEEE
T ss_pred             EEEcCCCCEEEEeCC------CCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEccC--------CceEEEE
Confidence            3332 5788886421      246899999 77776542 1211122223333  5678887532        2357889


Q ss_pred             ECCCCceEEc
Q 018336          259 QLGTGEWKRA  268 (358)
Q Consensus       259 d~~~~~W~~~  268 (358)
                      |+ +++...+
T Consensus       210 ~~-~g~~~~~  218 (299)
T 2z2n_A          210 TT-SGEITEF  218 (299)
T ss_dssp             CT-TCCEEEE
T ss_pred             CC-CCcEEEE
Confidence            99 7776654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=94.84  E-value=3  Score=40.17  Aligned_cols=108  Identities=21%  Similarity=0.187  Sum_probs=61.6

Q ss_pred             ceEEEEeCCCCC--eeecCCCCCCCC----CCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCC-
Q 018336          102 YGVTVFDPVSLT--WDRLGPVPEYPA----GLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKN-  172 (358)
Q Consensus       102 ~~~~~~d~~~~~--W~~~~~~~~~~~----~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~-  172 (358)
                      ..++++|..+++  |+.-...+....    .......++..++.||+...        ...++.+|..|.+  |+.-.. 
T Consensus        87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~--------dg~l~alD~~tG~~~W~~~~~~  158 (677)
T 1kb0_A           87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--------DGRLIALDAATGKEVWHQNTFE  158 (677)
T ss_dssp             GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT--------TSEEEEEETTTCCEEEEEETTT
T ss_pred             CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC--------CCEEEEEECCCCCEEeeecCCc
Confidence            368899998775  876544321000    00011234567888888743        2479999998775  765322 


Q ss_pred             -CCC-CceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc--eEec
Q 018336          173 -MPD-NRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE--WTEL  218 (358)
Q Consensus       173 -~~~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~  218 (358)
                       .+. .....+.++.++.+|+..+..+. .....+..||..|++  |+.-
T Consensus       159 ~~~~~~~~~~~p~v~~~~v~v~~~~~~~-~~~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          159 GQKGSLTITGAPRVFKGKVIIGNGGAEY-GVRGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             TCCSSCBCCSCCEEETTEEEECCBCTTT-CCBCEEEEEETTTCCEEEEEE
T ss_pred             CcCcCcccccCcEEECCEEEEEeccccc-CCCCEEEEEECCCCcEEEEec
Confidence             111 11222334568888876442221 124679999998775  8753

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=94.82  E-value=1.4  Score=36.36  Aligned_cols=145  Identities=10%  Similarity=-0.005  Sum_probs=76.2

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCC-CcEEeCCCCCCCceee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTT-RRWTRGKNMPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~~  180 (358)
                      ..+..+|..+++...+.....     ........-++..+++++        ...+++||..+ .+...+........-.
T Consensus        22 ~~i~~~d~~~~~~~~~~~~~~-----~v~~~~~spdg~~l~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~~~~   88 (297)
T 2ojh_A           22 SSIEIFNIRTRKMRVVWQTPE-----LFEAPNWSPDGKYLLLNS--------EGLLYRLSLAGDPSPEKVDTGFATICNN   88 (297)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-----CCEEEEECTTSSEEEEEE--------TTEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred             eeEEEEeCCCCceeeeccCCc-----ceEeeEECCCCCEEEEEc--------CCeEEEEeCCCCCCceEecccccccccc
Confidence            468889998887765543322     112122223555555553        23799999998 7776654333211111


Q ss_pred             eeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE-EECCE-EEEEeCcccCCCCceeeeeEE
Q 018336          181 AAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV-VIGSE-FWVVSGYKTERQGIFDESAES  257 (358)
Q Consensus       181 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~-lyv~gG~~~~~~~~~~~~i~~  257 (358)
                      ..+. -+++.+++++....  ....++.++..++.-+.+.....   ..... .-+++ |++.++...      ...++.
T Consensus        89 ~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~------~~~l~~  157 (297)
T 2ojh_A           89 DHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQ------VFDIYS  157 (297)
T ss_dssp             CCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETT------EEEEEE
T ss_pred             ceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCCC------ceEEEE
Confidence            2222 24554555443221  24678999988877665543321   11222 22555 444443321      236777


Q ss_pred             EECCCCceEEcCC
Q 018336          258 YQLGTGEWKRAEN  270 (358)
Q Consensus       258 yd~~~~~W~~~~~  270 (358)
                      +|..++....+..
T Consensus       158 ~~~~~~~~~~~~~  170 (297)
T 2ojh_A          158 MDIDSGVETRLTH  170 (297)
T ss_dssp             EETTTCCEEECCC
T ss_pred             EECCCCcceEccc
Confidence            7787777665543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=94.73  E-value=1.6  Score=36.63  Aligned_cols=138  Identities=10%  Similarity=-0.000  Sum_probs=72.1

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCC----
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN----  176 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~----  176 (358)
                      ..+..||+.++ ...+.....      ...+++. -++.+|+....       ...+.+||+.+.+.+.+......    
T Consensus        50 ~~i~~~~~~~~-~~~~~~~~~------~~~~l~~~~dg~l~v~~~~-------~~~i~~~d~~~g~~~~~~~~~~~~~~~  115 (296)
T 3e5z_A           50 NRTWAWSDDGQ-LSPEMHPSH------HQNGHCLNKQGHLIACSHG-------LRRLERQREPGGEWESIADSFEGKKLN  115 (296)
T ss_dssp             TEEEEEETTSC-EEEEESSCS------SEEEEEECTTCCEEEEETT-------TTEEEEECSTTCCEEEEECEETTEECC
T ss_pred             CEEEEEECCCC-eEEEECCCC------CcceeeECCCCcEEEEecC-------CCeEEEEcCCCCcEEEEeeccCCCCCC
Confidence            36889999987 555433211      1123333 35778776531       24799999988887765321111    


Q ss_pred             ceeeeeEEECCEEEEE----cCcCC-------CCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCc
Q 018336          177 RSFFAAGELNGRVIIA----GGHDE-------NKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGY  243 (358)
Q Consensus       177 ~~~~~~~~~~~~iyv~----GG~~~-------~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~  243 (358)
                      +....+..-++.+|+.    |....       .......++.|++. ++.+.+..-   ......+.+  ++++++....
T Consensus       116 ~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~---~~~~~gi~~s~dg~~lv~~~~  191 (296)
T 3e5z_A          116 SPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD---RVKPNGLAFLPSGNLLVSDTG  191 (296)
T ss_dssp             CCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC---CSSEEEEEECTTSCEEEEETT
T ss_pred             CCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC---CCCCccEEECCCCCEEEEeCC
Confidence            1111222236788886    43110       00113478899887 555543211   111122333  5666644422


Q ss_pred             ccCCCCceeeeeEEEECC-CCce
Q 018336          244 KTERQGIFDESAESYQLG-TGEW  265 (358)
Q Consensus       244 ~~~~~~~~~~~i~~yd~~-~~~W  265 (358)
                              ...+++||+. +++.
T Consensus       192 --------~~~i~~~~~~~~g~~  206 (296)
T 3e5z_A          192 --------DNATHRYCLNARGET  206 (296)
T ss_dssp             --------TTEEEEEEECSSSCE
T ss_pred             --------CCeEEEEEECCCCcC
Confidence                    2367888876 4555

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=94.64  E-value=1.6  Score=41.53  Aligned_cols=192  Identities=15%  Similarity=0.070  Sum_probs=100.1

Q ss_pred             ceEEEEeCCC------CCeeecC-CCCCCCCCCCceeEEEEECCE-EEEEcCcCCCCCC-CcceeEEEECC-CC---cEE
Q 018336          102 YGVTVFDPVS------LTWDRLG-PVPEYPAGLPLFCQVASSQGK-LVVMGGWDPASYS-PVSHVFVYDFT-TR---RWT  168 (358)
Q Consensus       102 ~~~~~~d~~~------~~W~~~~-~~~~~~~~~~~~~~~~~~~~~-lyv~Gg~~~~~~~-~~~~~~~yd~~-t~---~W~  168 (358)
                      ..++.+|..+      +.-..+. .-..     .......+-+++ |+... .+..... ...+++++|.. +.   ..+
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~SpDG~~la~~~-~~~~~~~~~~~~i~~~d~~~~g~~~~~~  234 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHR-----FVTGPRLSPDGRQAVWLA-WDHPRMPWEGTELKTARVTEDGRFADTR  234 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSS-----EECCCEECTTSSEEEEEE-ECTTCCTTTCEEEEEEEECTTSCEEEEE
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCC-----cccCceECCCCCEEEEEE-CCCCCCCCCCcEEEEEEECCCCcccccE
Confidence            5788889887      5655554 2111     011112223444 44433 2211100 13579999998 56   333


Q ss_pred             eCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCc----C---ceeEEEE-CCEEEE
Q 018336          169 RGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQER----D---ECEAVVI-GSEFWV  239 (358)
Q Consensus       169 ~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~----~---~~~~~~~-~~~lyv  239 (358)
                      .+..-. .......+. -++++|+.+..+.    ...++.+|..++.++.+.......    .   ....+.. ++++++
T Consensus       235 ~l~~~~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~  309 (662)
T 3azo_A          235 TLLGGP-EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV  309 (662)
T ss_dssp             EEEEET-TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred             EeCCCC-CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEE
Confidence            332211 111122222 2667777765432    247999999888898876432211    0   1123333 677777


Q ss_pred             EeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEE-EEeCCeEEEECC
Q 018336          240 VSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCR-VELGGCTLVTGS  318 (358)
Q Consensus       240 ~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~-~~~~~~i~v~gG  318 (358)
                      .+.. +      ...++.+|..+++.+.+....     .  .                     ...+ ...++.+++..+
T Consensus       310 ~~~~-~------~~~l~~~d~~~~~~~~l~~~~-----~--~---------------------~~~~~s~~~~~~~~~~~  354 (662)
T 3azo_A          310 VHGK-G------AAVLGILDPESGELVDAAGPW-----T--E---------------------WAATLTVSGTRAVGVAA  354 (662)
T ss_dssp             EEBS-S------SCEEEEEETTTTEEEECCSSC-----C--E---------------------EEEEEEEETTEEEEEEE
T ss_pred             EEEc-C------ccEEEEEECCCCcEEEecCCC-----C--e---------------------EEEEEecCCCEEEEEEc
Confidence            7654 2      346788898888776654321     0  0                     0112 334566666544


Q ss_pred             CCCCCCceEEEEECCCCceEee
Q 018336          319 GYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       319 ~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                      .. .....+|.+|..+++.+.+
T Consensus       355 ~~-~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          355 SP-RTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             ET-TEEEEEEEEETTTCCEEEE
T ss_pred             CC-CCCCEEEEEECCCCceEEe
Confidence            32 1115788889888887776

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=94.63  E-value=0.34  Score=42.17  Aligned_cols=106  Identities=8%  Similarity=0.141  Sum_probs=60.3

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE--C--CEEEEEcCcCCCCCCCCeEEEEECCC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL--N--GRVIIAGGHDENKTALSSAWAYDLIK  212 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~t  212 (358)
                      ++..++.|+.+       ..+.+||....+++.+..+............  +  +.+++.|+.+      ..+.+||..+
T Consensus        22 ~~~~l~~~~~d-------g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~   88 (379)
T 3jrp_A           22 YGKRLATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEEN   88 (379)
T ss_dssp             SSSEEEEEETT-------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SCEEEEEEET
T ss_pred             CCCEEEEEECC-------CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC------CEEEEEEcCC
Confidence            45566666533       3588888876666654433322222222222  2  5666666654      3589999999


Q ss_pred             CceEecCCCccCcCceeEEEE--C--CEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          213 DEWTELARMTQERDECEAVVI--G--SEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       213 ~~W~~~~~~p~~~~~~~~~~~--~--~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      +.|..+..+.........+.+  +  +.++++|+.+        ..+..||..+.
T Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~  135 (379)
T 3jrp_A           89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD--------GKVSVVEFKEN  135 (379)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT--------SEEEEEECCTT
T ss_pred             CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC--------CcEEEEecCCC
Confidence            988766544433333333333  2  5667776542        35678888766

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=94.61  E-value=0.014  Score=55.46  Aligned_cols=34  Identities=18%  Similarity=0.336  Sum_probs=31.6

Q ss_pred             CCCCcHHHHHHHhccC-CcchhhhHHhhcHhHHHh
Q 018336           27 VPGLPEEISLECLTRL-HYSTHRVATRVSRRWRQL   60 (358)
Q Consensus        27 ~~~Lp~d~~~~il~rl-p~~~~~~~~~v~k~w~~l   60 (358)
                      .+.||+|++.+||.+| |.++..+++.|||+|+.+
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            3579999999999999 899999999999999987

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=94.59  E-value=0.36  Score=42.38  Aligned_cols=106  Identities=13%  Similarity=0.158  Sum_probs=54.0

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE-EC-CEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LN-GRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++..++.|+.+       ..+.+||..+.+-...-...... -.+++. .+ +.+++.++.+.      .+.+||..+.+
T Consensus       150 dg~~l~sgs~d-------g~v~iwd~~~~~~~~~~~~h~~~-v~~v~~s~~~~~~~~s~~~dg------~v~~wd~~~~~  215 (357)
T 4g56_B          150 DGTQAVSGGKD-------FSVKVWDLSQKAVLKSYNAHSSE-VNCVAACPGKDTIFLSCGEDG------RILLWDTRKPK  215 (357)
T ss_dssp             SSSEEEEEETT-------SCEEEEETTTTEEEEEECCCSSC-EEEEEECTTCSSCEEEEETTS------CEEECCTTSSS
T ss_pred             CCCEEEEEeCC-------CeEEEEECCCCcEEEEEcCCCCC-EEEEEEccCCCceeeeeccCC------ceEEEECCCCc
Confidence            56666776643       36889999887643321111111 112222 12 34666666443      48889988765


Q ss_pred             eEecCCCccCcCceeEEEE---CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          215 WTELARMTQERDECEAVVI---GSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       215 W~~~~~~p~~~~~~~~~~~---~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      -...............+.+   ++.+++.|+.+        ..+..||..+.+
T Consensus       216 ~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d--------~~i~~wd~~~~~  260 (357)
T 4g56_B          216 PATRIDFCASDTIPTSVTWHPEKDDTFACGDET--------GNVSLVNIKNPD  260 (357)
T ss_dssp             CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS--------SCEEEEESSCGG
T ss_pred             eeeeeeeccccccccchhhhhcccceEEEeecc--------cceeEEECCCCc
Confidence            4332222222222223333   35577776542        356788887653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=94.52  E-value=0.67  Score=41.68  Aligned_cols=175  Identities=13%  Similarity=0.112  Sum_probs=87.6

Q ss_pred             EEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          134 ASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       134 ~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                      ...++..++.|+.+       ..+.+||..+.+-...-  ............++.+++.|+.+.      .+.+||..++
T Consensus       139 ~~~d~~~l~~g~~d-------g~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~l~sg~~dg------~i~vwd~~~~  203 (435)
T 1p22_A          139 LQYDDQKIVSGLRD-------NTIKIWDKNTLECKRIL--TGHTGSVLCLQYDERVIITGSSDS------TVRVWDVNTG  203 (435)
T ss_dssp             EECCSSEEEEEESS-------SCEEEEESSSCCEEEEE--CCCSSCEEEEECCSSEEEEEETTS------CEEEEESSSC
T ss_pred             EEECCCEEEEEeCC-------CeEEEEeCCCCeEEEEE--cCCCCcEEEEEECCCEEEEEcCCC------eEEEEECCCC
Confidence            34467777777643       36899998876643321  111111122233777777776543      4999999887


Q ss_pred             ceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEc-CCccccCCCC--------Cceeee
Q 018336          214 EWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRA-ENAWKLSQCP--------RSNVGV  284 (358)
Q Consensus       214 ~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~-~~~p~~~~~~--------~~~~~~  284 (358)
                      .-...  +.........+..++..++.|+.+        ..+..||..++.-... ..+.. ....        ...+..
T Consensus       204 ~~~~~--~~~h~~~v~~l~~~~~~l~s~s~d--------g~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~  272 (435)
T 1p22_A          204 EMLNT--LIHHCEAVLHLRFNNGMMVTCSKD--------RSIAVWDMASPTDITLRRVLVG-HRAAVNVVDFDDKYIVSA  272 (435)
T ss_dssp             CEEEE--ECCCCSCEEEEECCTTEEEEEETT--------SCEEEEECSSSSCCEEEEEECC-CSSCEEEEEEETTEEEEE
T ss_pred             cEEEE--EcCCCCcEEEEEEcCCEEEEeeCC--------CcEEEEeCCCCCCceeeeEecC-CCCcEEEEEeCCCEEEEE
Confidence            54321  222222233345566667776643        3567788876542111 11100 0000        000011


Q ss_pred             -------eecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceE
Q 018336          285 -------GREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFR  338 (358)
Q Consensus       285 -------~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~  338 (358)
                             .||.++.+-...-........+...++++++.|+.+    ..|.+||..+++-.
T Consensus       273 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~g~~d----g~i~iwd~~~~~~~  329 (435)
T 1p22_A          273 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSD----NTIRLWDIECGACL  329 (435)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETT----SCEEEEETTTCCEE
T ss_pred             eCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEEEeCC----CeEEEEECCCCCEE
Confidence                   333333211000001123455566677777777765    77888888776543

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=94.46  E-value=1.8  Score=36.03  Aligned_cols=181  Identities=7%  Similarity=0.000  Sum_probs=94.2

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCC-cee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN-RSF  179 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~-~~~  179 (358)
                      ..+..||+. ++...+.. +...   .....++.. ++.+|+....       ...+++||+. .+..... ++.. ..-
T Consensus        83 ~~v~~~d~~-g~~~~~~~-~~~~---~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~-g~~~~~~-~~~~~~~~  148 (300)
T 2qc5_A           83 NKIGKLSKK-GGFTEYPL-PQPD---SGPYGITEGLNGDIWFTQLN-------GDRIGKLTAD-GTIYEYD-LPNKGSYP  148 (300)
T ss_dssp             TEEEEECTT-SCEEEEEC-SSTT---CCEEEEEECSTTCEEEEETT-------TTEEEEECTT-SCEEEEE-CSSTTCCE
T ss_pred             CeEEEECCC-CCeEEecC-CCCC---CCCccceECCCCCEEEEccC-------CCeEEEECCC-CCEEEcc-CCCCCCCc
Confidence            368889988 76654422 1111   112233333 6788887542       2468999987 6655432 1211 112


Q ss_pred             eeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeE
Q 018336          180 FAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAE  256 (358)
Q Consensus       180 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~  256 (358)
                      ...+. -++.+|+....      ...+.+||+ +++...+. .+........+.+  +|.+|+....        ...+.
T Consensus       149 ~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~--------~~~i~  212 (300)
T 2qc5_A          149 AFITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYP-LPTNAAAPVGITSGNDGALWFVEIM--------GNKIG  212 (300)
T ss_dssp             EEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT--------TTEEE
T ss_pred             eeEEECCCCCEEEEecC------CCeEEEECC-CCcEEEee-CCCCCCCcceEEECCCCCEEEEccC--------CCEEE
Confidence            22333 25678886421      246899998 66666543 2222222233333  5678887532        23578


Q ss_pred             EEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          257 SYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       257 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                      +||+ ++++..... +...  . ....+                     +..-+++||+.....    +.|.+||+ +++
T Consensus       213 ~~~~-~g~~~~~~~-~~~~--~-~~~~i---------------------~~d~~g~l~v~~~~~----~~i~~~~~-~g~  261 (300)
T 2qc5_A          213 RITT-TGEISEYDI-PTPN--A-RPHAI---------------------TAGKNSEIWFTEWGA----NQIGRITN-DNT  261 (300)
T ss_dssp             EECT-TCCEEEEEC-SSTT--C-CEEEE---------------------EECSTTCEEEEETTT----TEEEEECT-TSC
T ss_pred             EEcC-CCcEEEEEC-CCCC--C-CceEE---------------------EECCCCCEEEeccCC----CeEEEECC-CCc
Confidence            8988 566655421 1100  0 00111                     223357788876322    57889998 456


Q ss_pred             eEeecCC
Q 018336          337 FRKFDVP  343 (358)
Q Consensus       337 W~~~~~p  343 (358)
                      .....+|
T Consensus       262 ~~~~~~~  268 (300)
T 2qc5_A          262 IQEYQLQ  268 (300)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            6555444

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=94.44  E-value=0.73  Score=41.51  Aligned_cols=135  Identities=7%  Similarity=0.035  Sum_probs=67.5

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE--ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCce-e
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS--SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRS-F  179 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~-~  179 (358)
                      .+..||..+.+-..+........  .. .+++.  .++.+++.|+.+       ..+.+||..++..+.+........ .
T Consensus       143 ~i~lWd~~~~~~~~~~~~~gH~~--~V-~~l~f~p~~~~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~~~~~~~~  212 (435)
T 4e54_B          143 DIMLWNFGIKDKPTFIKGIGAGG--SI-TGLKFNPLNTNQFYASSME-------GTTRLQDFKGNILRVFASSDTINIWF  212 (435)
T ss_dssp             CEEEECSSCCSCCEEECCCSSSC--CC-CEEEECSSCTTEEEEECSS-------SCEEEEETTSCEEEEEECCSSCSCCC
T ss_pred             EEEEEECCCCCceeEEEccCCCC--CE-EEEEEeCCCCCEEEEEeCC-------CEEEEeeccCCceeEEeccCCCCccE
Confidence            57888887765433322221111  11 13333  245666666643       358889998876655432221111 1


Q ss_pred             eeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CC-EEEEEeCcccCCCCceeeee
Q 018336          180 FAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GS-EFWVVSGYKTERQGIFDESA  255 (358)
Q Consensus       180 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~-~lyv~gG~~~~~~~~~~~~i  255 (358)
                      .+.+. -++.+++.|+.+      ..+.+||..+..-.   .+.........+.+  ++ .+++.|+.+        ..+
T Consensus       213 ~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~~~~---~~~~h~~~v~~v~~~p~~~~~~~s~s~d--------~~v  275 (435)
T 4e54_B          213 CSLDVSASSRMVVTGDNV------GNVILLNMDGKELW---NLRMHKKKVTHVALNPCCDWFLATASVD--------QTV  275 (435)
T ss_dssp             CCEEEETTTTEEEEECSS------SBEEEEESSSCBCC---CSBCCSSCEEEEEECTTCSSEEEEEETT--------SBC
T ss_pred             EEEEECCCCCEEEEEeCC------CcEeeeccCcceeE---EEecccceEEeeeecCCCceEEEEecCc--------cee
Confidence            22222 256677777654      35888998754322   22211122223333  33 366666543        245


Q ss_pred             EEEECCCCc
Q 018336          256 ESYQLGTGE  264 (358)
Q Consensus       256 ~~yd~~~~~  264 (358)
                      .+||..+.+
T Consensus       276 ~iwd~~~~~  284 (435)
T 4e54_B          276 KIWDLRQVR  284 (435)
T ss_dssp             CEEETTTCC
T ss_pred             eEEeccccc
Confidence            678877643

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=94.44  E-value=2.2  Score=36.74  Aligned_cols=133  Identities=14%  Similarity=0.015  Sum_probs=68.4

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCC--Ccee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPD--NRSF  179 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~--~~~~  179 (358)
                      ..++.||+.+++...+. .+.     .....+..-++.+++...         ..+++||+.+.+.+.+...+.  +...
T Consensus        71 ~~i~~~d~~~~~~~~~~-~~~-----~v~~i~~~~dg~l~v~~~---------~gl~~~d~~~g~~~~~~~~~~~~~~~~  135 (326)
T 2ghs_A           71 RELHELHLASGRKTVHA-LPF-----MGSALAKISDSKQLIASD---------DGLFLRDTATGVLTLHAELESDLPGNR  135 (326)
T ss_dssp             TEEEEEETTTTEEEEEE-CSS-----CEEEEEEEETTEEEEEET---------TEEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred             CEEEEEECCCCcEEEEE-CCC-----cceEEEEeCCCeEEEEEC---------CCEEEEECCCCcEEEEeeCCCCCCCCC
Confidence            36889999887655442 222     112222334777777642         259999999988876643321  1112


Q ss_pred             eeeEE--ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE-ECC-EEEEEeCcccCCCCceeeee
Q 018336          180 FAAGE--LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV-IGS-EFWVVSGYKTERQGIFDESA  255 (358)
Q Consensus       180 ~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~-~~~-~lyv~gG~~~~~~~~~~~~i  255 (358)
                      .....  -++.+|+.............++.|+  +++.+.+..  ........+. -++ .+|+....        ...|
T Consensus       136 ~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~lyv~~~~--------~~~I  203 (326)
T 2ghs_A          136 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGYFVDTK--------VNRL  203 (326)
T ss_dssp             EEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEEEEETT--------TCEE
T ss_pred             CCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEEEEECC--------CCEE
Confidence            22222  2577776432111111235788888  465554421  0011112222 245 47776532        2467


Q ss_pred             EEEECC
Q 018336          256 ESYQLG  261 (358)
Q Consensus       256 ~~yd~~  261 (358)
                      ++||..
T Consensus       204 ~~~d~~  209 (326)
T 2ghs_A          204 MRVPLD  209 (326)
T ss_dssp             EEEEBC
T ss_pred             EEEEcc
Confidence            888875

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=94.39  E-value=1.6  Score=35.04  Aligned_cols=154  Identities=11%  Similarity=0.094  Sum_probs=83.7

Q ss_pred             eeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe--C----CCCCCCceeeeeEE-E--CCEEEEEcCcCCCCC
Q 018336          130 FCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR--G----KNMPDNRSFFAAGE-L--NGRVIIAGGHDENKT  200 (358)
Q Consensus       130 ~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~--~----~~~~~~~~~~~~~~-~--~~~iyv~GG~~~~~~  200 (358)
                      .-+++...+.+|++-|         ..+|+++.....+..  +    +.+|..   ..+|. .  ++++|++-|      
T Consensus        26 fDAi~~~~g~~y~Fkg---------~~~wr~~~~~~~~~p~~I~~~wp~Lp~~---iDAa~~~~~~~~iyfFkG------   87 (207)
T 1pex_A           26 LDAITSLRGETMIFKD---------RFFWRLHPQQVDAELFLTKSFWPELPNR---IDAAYEHPSHDLIFIFRG------   87 (207)
T ss_dssp             CSEEEEETTEEEEEET---------TEEEEECSSSSCCEEEEHHHHCTTSCSS---CCEEEEETTTTEEEEEET------
T ss_pred             EeEEEeCCCcEEEEEC---------CEEEEEeCCCcCCCceehhHhccCCCCC---ccEEEEeccCCcEEEEcc------
Confidence            4466678999999976         257888765433321  1    334432   22222 2  589999965      


Q ss_pred             CCCeEEEEECCCCc---eEecCC--CccCcCceeEE-EE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCcc
Q 018336          201 ALSSAWAYDLIKDE---WTELAR--MTQERDECEAV-VI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAW  272 (358)
Q Consensus       201 ~~~~~~~yd~~t~~---W~~~~~--~p~~~~~~~~~-~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p  272 (358)
                        +.+++|+..+-.   =+.+..  +|.......++ ..  ++++|++-|.          ..++||..+++-.  ..  
T Consensus        88 --~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~----------~ywr~d~~~~~~d--~g--  151 (207)
T 1pex_A           88 --RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN----------QVWRYDDTNHIMD--KD--  151 (207)
T ss_dssp             --TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT----------EEEEEETTTTEEC--SS--
T ss_pred             --CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC----------EEEEEeCcCcccc--CC--
Confidence              346777643211   122222  33321122233 32  4899999764          3578988765311  11  


Q ss_pred             ccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceE
Q 018336          273 KLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFR  338 (358)
Q Consensus       273 ~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~  338 (358)
                          .++..        ...|..+|..  ..+ ++..++++|++-|      +..|+||..+++=.
T Consensus       152 ----yPr~i--------~~~~~Gip~~--iDa-Af~~~g~~YfFkg------~~y~rf~~~~~~v~  196 (207)
T 1pex_A          152 ----YPRLI--------EEDFPGIGDK--VDA-VYEKNGYIYFFNG------PIQFEYSIWSNRIV  196 (207)
T ss_dssp             ----CCCBH--------HHHSTTSCSC--CSE-EEEETTEEEEEET------TEEEEEETTTTEEE
T ss_pred             ----CCccH--------HHcCCCCCCC--ccE-EEEcCCcEEEEEC------CEEEEEeCCccEEe
Confidence                11110        1234444432  222 3346899999988      58999999887633

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=94.26  E-value=4.5  Score=39.68  Aligned_cols=142  Identities=8%  Similarity=0.093  Sum_probs=79.6

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCC-CCCCc-eee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKN-MPDNR-SFF  180 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~-~~~~~-~~~  180 (358)
                      .+..||+.+++...+......... .........++.|++...         ..+++||+.++++..+.. .+... ...
T Consensus       108 Gl~~yd~~~~~f~~~~~~~~~~~~-~i~~i~~d~~g~lwi~t~---------~gl~~~~~~~~~~~~~~~~~~~~~~i~~  177 (795)
T 4a2l_A          108 GLSRYDEEKDIFQNFFYEKNGKHL-QVNGIEEISPEQLLISTP---------EGLIMFDIKESKFIDDSFSTAMHKTIAS  177 (795)
T ss_dssp             CEEEEETTTTEEEEECCEETTEEC-CCCEEEEEETTEEEEEET---------TEEEEEETTTTEEECSSSCHHHHTCCEE
T ss_pred             chheeCCCCCeEEeccccccCCCc-eEEEEEECCCCCEEEEEC---------CceEEEECCCCEEEeccCCCCCCcceEE
Confidence            578899998888776442211100 011122334778887643         368999999988876543 11111 111


Q ss_pred             eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE-EECCEEEEEeCcccCCCCceeeeeEEEE
Q 018336          181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV-VIGSEFWVVSGYKTERQGIFDESAESYQ  259 (358)
Q Consensus       181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~yd  259 (358)
                      .....++.+|+. ...      ..+..||+.+++++.+...+.......+. --++.|++...         ...+.+||
T Consensus       178 i~~d~~g~lwig-t~~------~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~---------~~Gl~~~~  241 (795)
T 4a2l_A          178 TLYRQGDQIYIG-TST------DGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE---------GAGLFLIN  241 (795)
T ss_dssp             EEEEETTEEEEE-ESS------SCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB---------SSCEEEEE
T ss_pred             EEECCCCCEEEE-ECC------CCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC---------CCCeEEEe
Confidence            112237888874 211      24899999999998764332211112222 34677776431         12467899


Q ss_pred             CCCCceEEcCC
Q 018336          260 LGTGEWKRAEN  270 (358)
Q Consensus       260 ~~~~~W~~~~~  270 (358)
                      +.++++.....
T Consensus       242 ~~~~~~~~~~~  252 (795)
T 4a2l_A          242 PKTKEIKNYLH  252 (795)
T ss_dssp             TTTTEEEEECC
T ss_pred             CCCCeEEEeec
Confidence            99998887653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=94.23  E-value=1.5  Score=37.58  Aligned_cols=120  Identities=12%  Similarity=0.014  Sum_probs=65.5

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      ++.||+.+..       ...+++||+.+++.+.+..... ..-.+++. -++.+|+......  .....+.+||+.++..
T Consensus        55 ~g~l~~~~~~-------~~~i~~~d~~~~~~~~~~~~~~-~~~~~i~~~~dg~l~v~~~~~~--~~~~~i~~~d~~~~~~  124 (333)
T 2dg1_A           55 QGQLFLLDVF-------EGNIFKINPETKEIKRPFVSHK-ANPAAIKIHKDGRLFVCYLGDF--KSTGGIFAATENGDNL  124 (333)
T ss_dssp             TSCEEEEETT-------TCEEEEECTTTCCEEEEEECSS-SSEEEEEECTTSCEEEEECTTS--SSCCEEEEECTTSCSC
T ss_pred             CCCEEEEECC-------CCEEEEEeCCCCcEEEEeeCCC-CCcceEEECCCCcEEEEeCCCC--CCCceEEEEeCCCCEE
Confidence            5778887653       2479999999988776432111 11222333 2677887753221  1124799999988876


Q ss_pred             Eec-CCCccCcCceeEEE-ECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEc
Q 018336          216 TEL-ARMTQERDECEAVV-IGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRA  268 (358)
Q Consensus       216 ~~~-~~~p~~~~~~~~~~-~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~  268 (358)
                      +.+ ...........++. -+|++|+........  .....++.+|+.+++...+
T Consensus       125 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~--~~~~~l~~~~~~~~~~~~~  177 (333)
T 2dg1_A          125 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST--NPLGGVYYVSPDFRTVTPI  177 (333)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTT--BCCEEEEEECTTSCCEEEE
T ss_pred             EEEEccCccCCcccceEECCCCCEEEEecccccc--CCCceEEEEeCCCCEEEEe
Confidence            532 22211111112222 267788865321110  1135688899887766554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=94.17  E-value=2.2  Score=35.80  Aligned_cols=136  Identities=8%  Similarity=-0.006  Sum_probs=67.8

Q ss_pred             eEEEEeCCCCC--eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc-EEeC-C-CCCCC-
Q 018336          103 GVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR-WTRG-K-NMPDN-  176 (358)
Q Consensus       103 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~-W~~~-~-~~~~~-  176 (358)
                      .+..||+ +++  |+.-.+-..     .........++.+++.....      ...++.+|+.-+. |+.- . ..+.+ 
T Consensus        57 ~V~~~d~-~G~~~W~~~~~~~~-----~~~~~~~~~dG~~lv~~~~~------~~~v~~vd~~Gk~l~~~~~~~~~~~~~  124 (276)
T 3no2_A           57 GAKMITR-DGRELWNIAAPAGC-----EMQTARILPDGNALVAWCGH------PSTILEVNMKGEVLSKTEFETGIERPH  124 (276)
T ss_dssp             EEEEECT-TSCEEEEEECCTTC-----EEEEEEECTTSCEEEEEEST------TEEEEEECTTSCEEEEEEECCSCSSGG
T ss_pred             CEEEECC-CCCEEEEEcCCCCc-----cccccEECCCCCEEEEecCC------CCEEEEEeCCCCEEEEEeccCCCCccc
Confidence            6888999 554  654332111     11112223356666654321      2367888874432 3321 1 11111 


Q ss_pred             -ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCC-CceEecCCCccCcCceeEE-EECCEEEEEeCcccCCCCceee
Q 018336          177 -RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIK-DEWTELARMTQERDECEAV-VIGSEFWVVSGYKTERQGIFDE  253 (358)
Q Consensus       177 -~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~~p~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~~  253 (358)
                       .........++.+++....      ...+.+||++- ..|+.-..  .  ..+.+. ..+|.+++.+..        ..
T Consensus       125 ~~~~~v~~~~~G~~lv~~~~------~~~v~~~d~~G~~~w~~~~~--~--~~~~~~~~~~g~~~v~~~~--------~~  186 (276)
T 3no2_A          125 AQFRQINKNKKGNYLVPLFA------TSEVREIAPNGQLLNSVKLS--G--TPFSSAFLDNGDCLVACGD--------AH  186 (276)
T ss_dssp             GSCSCCEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECS--S--CCCEEEECTTSCEEEECBT--------TS
T ss_pred             ccccCceECCCCCEEEEecC------CCEEEEECCCCCEEEEEECC--C--CccceeEcCCCCEEEEeCC--------CC
Confidence             1112222345666665431      24699999972 23664322  1  112233 447788877643        23


Q ss_pred             eeEEEECCCCc--eEEc
Q 018336          254 SAESYQLGTGE--WKRA  268 (358)
Q Consensus       254 ~i~~yd~~~~~--W~~~  268 (358)
                      .+..||+.+++  |+.-
T Consensus       187 ~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          187 CFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EEEEECTTTCCEEEEEE
T ss_pred             eEEEEeCcCCcEEEEec
Confidence            58899999765  7654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.13  E-value=2.4  Score=36.97  Aligned_cols=155  Identities=7%  Similarity=-0.096  Sum_probs=78.7

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCE-EEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGK-LVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF  179 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~-lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~  179 (358)
                      ..++.+|..+++...+...+.     ........- ++. |++... ... ......++++|..+..++.+.. ..+...
T Consensus       168 ~~l~~~d~~~g~~~~~~~~~~-----~~~~~~~sp~dg~~l~~~~~-~~~-~~~~~~l~~~d~~~~~~~~l~~-~~~~~~  239 (396)
T 3c5m_A          168 CRLIKVDIETGELEVIHQDTA-----WLGHPIYRPFDDSTVGFCHE-GPH-DLVDARMWLVNEDGSNVRKIKE-HAEGES  239 (396)
T ss_dssp             EEEEEEETTTCCEEEEEEESS-----CEEEEEEETTEEEEEEEEEC-SCS-SSCSCCCEEEETTSCCCEESSC-CCTTEE
T ss_pred             ceEEEEECCCCcEEeeccCCc-----ccccceECCCCCCEEEEEec-CCC-CCCCceEEEEECCCCceeEeec-cCCCcc
Confidence            468889998888766643211     111122222 233 444432 111 0112579999998888777655 221211


Q ss_pred             ee-eEE-ECCE-EEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE-CCEEEEEeCcccC---C-----
Q 018336          180 FA-AGE-LNGR-VIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI-GSEFWVVSGYKTE---R-----  247 (358)
Q Consensus       180 ~~-~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~gG~~~~---~-----  247 (358)
                      .. .+. -+++ |++......  .....++++|+.++..+.+...+..  . ....- +|+++++++....   .     
T Consensus       240 ~~~~~~spdg~~l~~~~~~~~--~~~~~l~~~d~~~g~~~~l~~~~~~--~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~  314 (396)
T 3c5m_A          240 CTHEFWIPDGSAMAYVSYFKG--QTDRVIYKANPETLENEEVMVMPPC--S-HLMSNFDGSLMVGDGCDAPVDVADADSY  314 (396)
T ss_dssp             EEEEEECTTSSCEEEEEEETT--TCCEEEEEECTTTCCEEEEEECCSE--E-EEEECSSSSEEEEEECCC----------
T ss_pred             ccceEECCCCCEEEEEecCCC--CccceEEEEECCCCCeEEeeeCCCC--C-CCccCCCCceEEEecCCcceeecccccc
Confidence            21 222 2444 544432111  1123499999998887766544421  1 22233 7887766542100   0     


Q ss_pred             CCceeeeeEEEECCCCceEEcC
Q 018336          248 QGIFDESAESYQLGTGEWKRAE  269 (358)
Q Consensus       248 ~~~~~~~i~~yd~~~~~W~~~~  269 (358)
                      .......++.+|+.+++...+.
T Consensus       315 ~~~~~~~i~~~d~~~~~~~~l~  336 (396)
T 3c5m_A          315 NIENDPFLYVLNTKAKSAQKLC  336 (396)
T ss_dssp             CCCCCCEEEEEETTTTBCCEEE
T ss_pred             ccCCCCcEEEEecccCceEEcc
Confidence            0001346889999888765544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=94.12  E-value=0.58  Score=40.66  Aligned_cols=107  Identities=10%  Similarity=0.193  Sum_probs=59.0

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee-eeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF-FAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++.+++.|+.       ...+.+||..+.+++.+..+...... .+++.. ++..++.|+.+      ..+.+||..++.
T Consensus        19 ~~~~l~~~~~-------d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~   85 (372)
T 1k8k_C           19 DRTQIAICPN-------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD------RNAYVWTLKGRT   85 (372)
T ss_dssp             TSSEEEEECS-------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT------SCEEEEEEETTE
T ss_pred             CCCEEEEEeC-------CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC------CeEEEEECCCCe
Confidence            5566666654       24799999998876555433322211 222222 56666666543      358999998887


Q ss_pred             eEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          215 WTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       215 W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      +.....+.........+.+  +++++++|+.+        ..+..||..+..
T Consensus        86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~v~i~d~~~~~  129 (372)
T 1k8k_C           86 WKPTLVILRINRAARCVRWAPNEKKFAVGSGS--------RVISICYFEQEN  129 (372)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETT--------SSEEEEEEETTT
T ss_pred             eeeeEEeecCCCceeEEEECCCCCEEEEEeCC--------CEEEEEEecCCC
Confidence            7654332222222222322  56677776543        245667766543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=94.06  E-value=2.5  Score=36.13  Aligned_cols=137  Identities=9%  Similarity=0.004  Sum_probs=72.6

Q ss_pred             ceEEEEeCCCCCeeecCC-CCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCC--CCce
Q 018336          102 YGVTVFDPVSLTWDRLGP-VPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMP--DNRS  178 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~--~~~~  178 (358)
                      ..+..+|+.+.+-....+ .....    .......-++.+|+...        ...+.+||..+.+-......+  .+..
T Consensus       164 ~~i~~~d~~~~~~~~~~~~~~~~~----~~~~~s~dg~~l~~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~~~  231 (353)
T 3vgz_A          164 SVIWVVDGGNIKLKTAIQNTGKMS----TGLALDSEGKRLYTTNA--------DGELITIDTADNKILSRKKLLDDGKEH  231 (353)
T ss_dssp             CEEEEEETTTTEEEEEECCCCTTC----CCCEEETTTTEEEEECT--------TSEEEEEETTTTEEEEEEECCCSSSCC
T ss_pred             ceEEEEcCCCCceEEEecCCCCcc----ceEEECCCCCEEEEEcC--------CCeEEEEECCCCeEEEEEEcCCCCCCc
Confidence            358889998776433322 11111    11122223456777654        247889999887644321211  1122


Q ss_pred             ee-eeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCE-EEEEeCcccCCCCceeee
Q 018336          179 FF-AAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSE-FWVVSGYKTERQGIFDES  254 (358)
Q Consensus       179 ~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~-lyv~gG~~~~~~~~~~~~  254 (358)
                      .. +.+..  ++.+|+....      ...+.+||+.+++....-..+.+.  .....-+++ +|+....        ...
T Consensus       232 ~~~~~~~s~dg~~l~~~~~~------~~~v~~~d~~~~~~~~~~~~~~~~--~~~~s~dg~~l~v~~~~--------~~~  295 (353)
T 3vgz_A          232 FFINISLDTARQRAFITDSK------AAEVLVVDTRNGNILAKVAAPESL--AVLFNPARNEAYVTHRQ--------AGK  295 (353)
T ss_dssp             CEEEEEEETTTTEEEEEESS------SSEEEEEETTTCCEEEEEECSSCC--CEEEETTTTEEEEEETT--------TTE
T ss_pred             ccceEEECCCCCEEEEEeCC------CCEEEEEECCCCcEEEEEEcCCCc--eEEECCCCCEEEEEECC--------CCe
Confidence            22 22332  4567776421      257999999887765433333321  122233444 7777643        236


Q ss_pred             eEEEECCCCceE
Q 018336          255 AESYQLGTGEWK  266 (358)
Q Consensus       255 i~~yd~~~~~W~  266 (358)
                      +.+||..+++..
T Consensus       296 v~~~d~~~~~~~  307 (353)
T 3vgz_A          296 VSVIDAKSYKVV  307 (353)
T ss_dssp             EEEEETTTTEEE
T ss_pred             EEEEECCCCeEE
Confidence            788999887644

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=93.96  E-value=1.4  Score=38.15  Aligned_cols=146  Identities=12%  Similarity=0.284  Sum_probs=72.6

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee-
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF-  180 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~-  180 (358)
                      .+..||..+++|.....+...... .. .+++. -++..++.|+.+       ..+.+||..+..+..+..+....... 
T Consensus        39 ~i~iw~~~~~~~~~~~~~~~~h~~-~v-~~~~~sp~g~~l~s~s~D-------~~v~iw~~~~~~~~~~~~~~~h~~~v~  109 (345)
T 3fm0_A           39 RIRIWGTEGDSWICKSVLSEGHQR-TV-RKVAWSPCGNYLASASFD-------ATTCIWKKNQDDFECVTTLEGHENEVK  109 (345)
T ss_dssp             CEEEEEEETTEEEEEEEECSSCSS-CE-EEEEECTTSSEEEEEETT-------SCEEEEEECCC-EEEEEEECCCSSCEE
T ss_pred             eEEEEEcCCCcceeeeeeccccCC-cE-EEEEECCCCCEEEEEECC-------CcEEEEEccCCCeEEEEEccCCCCCce
Confidence            577788887776533222111111 11 12222 256666677643       35778888777665443332221111 


Q ss_pred             eeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCC-ceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeE
Q 018336          181 AAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKD-EWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAE  256 (358)
Q Consensus       181 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~  256 (358)
                      +++. -++.+++.|+.+.      .+.+||..+. .+..+..+.........+.+  ++++++.|+.+        ..+.
T Consensus       110 ~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d--------~~i~  175 (345)
T 3fm0_A          110 SVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD--------DTVK  175 (345)
T ss_dssp             EEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT--------SCEE
T ss_pred             EEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC--------CcEE
Confidence            2222 2566777776543      4888888654 23322222211111222222  56666666543        2467


Q ss_pred             EEECCCCceEEcCCc
Q 018336          257 SYQLGTGEWKRAENA  271 (358)
Q Consensus       257 ~yd~~~~~W~~~~~~  271 (358)
                      .||..++.|..+..+
T Consensus       176 ~w~~~~~~~~~~~~~  190 (345)
T 3fm0_A          176 LYREEEDDWVCCATL  190 (345)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             EEEecCCCEEEEEEe
Confidence            788888877655443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=93.91  E-value=0.22  Score=43.72  Aligned_cols=138  Identities=9%  Similarity=0.097  Sum_probs=63.3

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCc-EEeCCCCCCCceee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRR-WTRGKNMPDNRSFF  180 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~~  180 (358)
                      .+..||..++.|..+..+.....  .. .+++.. ++.+++.|+.+       ..+.+||..+.. |.....+.......
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~h~~--~v-~~~~~s~~~~~l~s~s~d-------~~v~vwd~~~~~~~~~~~~~~~~~~~v  103 (377)
T 3dwl_C           34 QVELYEQDGNGWKHARTFSDHDK--IV-TCVDWAPKSNRIVTCSQD-------RNAYVYEKRPDGTWKQTLVLLRLNRAA  103 (377)
T ss_dssp             CBCEEEEETTEEEECCCBCCCSS--CE-EEEEECTTTCCEEEEETT-------SSEEEC------CCCCEEECCCCSSCE
T ss_pred             EEEEEEccCCceEEEEEEecCCc--eE-EEEEEeCCCCEEEEEeCC-------CeEEEEEcCCCCceeeeeEecccCCce
Confidence            46678888887777666554221  11 122222 45666666643       368899988876 43322221111111


Q ss_pred             eeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCc-eEecCCCcc-CcCceeEEEE--CCEEEEEeCcccCCCCceeee
Q 018336          181 AAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDE-WTELARMTQ-ERDECEAVVI--GSEFWVVSGYKTERQGIFDES  254 (358)
Q Consensus       181 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~p~-~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~  254 (358)
                      ..+..  ++..++.|+.+      ..+.+||..++. |.....+.. .......+.+  ++++++.|+.+        ..
T Consensus       104 ~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--------~~  169 (377)
T 3dwl_C          104 TFVRWSPNEDKFAVGSGA------RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD--------RK  169 (377)
T ss_dssp             EEEECCTTSSCCEEEESS------SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS--------SC
T ss_pred             EEEEECCCCCEEEEEecC------CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC--------CE
Confidence            11222  45566666543      348888887664 433333322 1111222222  56677777653        24


Q ss_pred             eEEEECCCCc
Q 018336          255 AESYQLGTGE  264 (358)
Q Consensus       255 i~~yd~~~~~  264 (358)
                      +..||..+..
T Consensus       170 i~iwd~~~~~  179 (377)
T 3dwl_C          170 AYVLSAYVRD  179 (377)
T ss_dssp             EEEEEECCSS
T ss_pred             EEEEEEEecc
Confidence            6778876543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=93.87  E-value=0.18  Score=44.30  Aligned_cols=107  Identities=13%  Similarity=0.222  Sum_probs=53.5

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++.+++.|+.+       ..+.+||..++.|+.+..+............  ++..++.|+.+      ..+.+||..++.
T Consensus        22 ~g~~l~~~~~d-------~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~~~   88 (377)
T 3dwl_C           22 QRTEFVTTTAT-------NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRPDG   88 (377)
T ss_dssp             SSSEEECCCSS-------SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT------SSEEEC------
T ss_pred             CCCEEEEecCC-------CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCCCC
Confidence            55666666543       3688899998888777666543322222222  45666666644      348899998876


Q ss_pred             -eEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          215 -WTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       215 -W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                       |.....+.........+.+  ++++++.|+.+        ..+..||..+++
T Consensus        89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~  133 (377)
T 3dwl_C           89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA--------RVISVCYFEQEN  133 (377)
T ss_dssp             CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS--------SCEEECCC----
T ss_pred             ceeeeeEecccCCceEEEEECCCCCEEEEEecC--------CeEEEEEECCcc
Confidence             5443322222222222222  56666666542        246778887664

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=93.85  E-value=2.1  Score=37.85  Aligned_cols=149  Identities=12%  Similarity=0.108  Sum_probs=75.4

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                      ++.+++.|+.+       ..+.+||..+.+-.. +.....+.  .+++..  +..+++.||-..    -..+.+||..++
T Consensus       228 ~~~~l~s~~~d-------~~v~iwd~~~~~~~~~~~~~~~~v--~~~~~~p~~~~ll~~~~gs~----d~~i~i~d~~~~  294 (401)
T 4aez_A          228 DGLQLASGGND-------NVVQIWDARSSIPKFTKTNHNAAV--KAVAWCPWQSNLLATGGGTM----DKQIHFWNAATG  294 (401)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTCSSEEEEECCCSSCC--CEEEECTTSTTEEEEECCTT----TCEEEEEETTTC
T ss_pred             CCCEEEEEeCC-------CeEEEccCCCCCccEEecCCcceE--EEEEECCCCCCEEEEecCCC----CCEEEEEECCCC
Confidence            55666666643       368999988754322 22111111  122222  446777764221    146999999876


Q ss_pred             ceEecCCCccCcCceeEEEE--CCEEEEE-eCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCcc
Q 018336          214 EWTELARMTQERDECEAVVI--GSEFWVV-SGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKL  290 (358)
Q Consensus       214 ~W~~~~~~p~~~~~~~~~~~--~~~lyv~-gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~  290 (358)
                      .-...-...  . ....+.+  +++.++. +|..       ...+.+||..++.......+....  ..           
T Consensus       295 ~~~~~~~~~--~-~v~~~~~s~~~~~l~~~~g~~-------dg~i~v~~~~~~~~~~~~~~~~h~--~~-----------  351 (401)
T 4aez_A          295 ARVNTVDAG--S-QVTSLIWSPHSKEIMSTHGFP-------DNNLSIWSYSSSGLTKQVDIPAHD--TR-----------  351 (401)
T ss_dssp             CEEEEEECS--S-CEEEEEECSSSSEEEEEECTT-------TCEEEEEEEETTEEEEEEEEECCS--SC-----------
T ss_pred             CEEEEEeCC--C-cEEEEEECCCCCeEEEEeecC-------CCcEEEEecCCccceeEEEecCCC--CC-----------
Confidence            543322111  1 1122222  4444444 3432       236788888887666554432110  00           


Q ss_pred             CceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          291 FCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       291 ~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                                 ........+++.++.|+.+    ..|.+||..+++
T Consensus       352 -----------v~~~~~s~dg~~l~s~~~d----g~i~iw~~~~~~  382 (401)
T 4aez_A          352 -----------VLYSALSPDGRILSTAASD----ENLKFWRVYDGD  382 (401)
T ss_dssp             -----------CCEEEECTTSSEEEEECTT----SEEEEEECCC--
T ss_pred             -----------EEEEEECCCCCEEEEEeCC----CcEEEEECCCCc
Confidence                       0111233467777777764    578889988765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=93.84  E-value=2.4  Score=36.07  Aligned_cols=160  Identities=10%  Similarity=0.063  Sum_probs=77.8

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCC-CcEEeCC----CCCCCceeeeeEE-EC-CEEEEEcCcCCCCCCCCeEEEEE
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTT-RRWTRGK----NMPDNRSFFAAGE-LN-GRVIIAGGHDENKTALSSAWAYD  209 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t-~~W~~~~----~~~~~~~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd  209 (358)
                      +..+|+.+..       ...+.+||..+ .+...+.    ..+....-..++. -+ ..+|+.+..      ...+.+|+
T Consensus       140 g~~l~~~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~------~~~i~~~~  206 (343)
T 1ri6_A          140 NRTLWVPALK-------QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL------NSSVDVWE  206 (343)
T ss_dssp             SSEEEEEEGG-------GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT------TTEEEEEE
T ss_pred             CCEEEEecCC-------CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC------CCEEEEEE
Confidence            3467776522       34799999987 6654322    1111111112222 23 457777532      24688888


Q ss_pred             CC--CCceEec---CCCccC---cCceeEEEE--CC-EEEEEeCcccCCCCceeeeeEEEECC--CCceEEcCCccccCC
Q 018336          210 LI--KDEWTEL---ARMTQE---RDECEAVVI--GS-EFWVVSGYKTERQGIFDESAESYQLG--TGEWKRAENAWKLSQ  276 (358)
Q Consensus       210 ~~--t~~W~~~---~~~p~~---~~~~~~~~~--~~-~lyv~gG~~~~~~~~~~~~i~~yd~~--~~~W~~~~~~p~~~~  276 (358)
                      ..  ++.++..   ..++..   ......+.+  ++ .||+.+..        ...+.+||..  +++++.+...+... 
T Consensus       207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~--------~~~i~v~d~~~~~~~~~~~~~~~~~~-  277 (343)
T 1ri6_A          207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT--------ASLITVFSVSEDGSVLSKEGFQPTET-  277 (343)
T ss_dssp             SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT--------TTEEEEEEECTTSCCEEEEEEEECSS-
T ss_pred             ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC--------CCEEEEEEEcCCCCceEEeeeecCCC-
Confidence            84  4555432   223322   111222333  34 46665532        2356778877  56677665543221 


Q ss_pred             CCCceeeeeecCccCceeccccceeeceEEEEeCCe-EEEECCCCCCCCceEEEEECCCCceEee-cCCC
Q 018336          277 CPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGC-TLVTGSGYQGGPQEFYVVEGRNGKFRKF-DVPA  344 (358)
Q Consensus       277 ~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~-i~v~gG~~~~~~~~i~~yd~~~~~W~~~-~~p~  344 (358)
                      .+..   +                     ...-+++ ||+.++.. + .-.+|.+|+.+++++.+ .++.
T Consensus       278 ~~~~---~---------------------~~s~dg~~l~~~~~~~-~-~v~v~~~d~~~g~~~~~~~~~~  321 (343)
T 1ri6_A          278 QPRG---F---------------------NVDHSGKYLIAAGQKS-H-HISVYEIVGEQGLLHEKGRYAV  321 (343)
T ss_dssp             SCCC---E---------------------EECTTSSEEEEECTTT-C-EEEEEEEETTTTEEEEEEEEEC
T ss_pred             ccce---E---------------------EECCCCCEEEEecCCC-C-eEEEEEEcCCCceeeEcccccc
Confidence            1111   1                     1223444 65555332 1 12344558888889888 4443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=93.80  E-value=2.7  Score=35.48  Aligned_cols=179  Identities=15%  Similarity=0.163  Sum_probs=86.1

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~  181 (358)
                      .+..||..+++-...-  .....  ........-++.+++.|+.+       ..+.+||..+.+-.. +..-..+.  .+
T Consensus        88 ~i~vwd~~~~~~~~~~--~~~~~--~v~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~v--~~  154 (312)
T 4ery_A           88 TLKIWDVSSGKCLKTL--KGHSN--YVFCCNFNPQSNLIVSGSFD-------ESVRIWDVKTGKCLKTLPAHSDPV--SA  154 (312)
T ss_dssp             EEEEEETTTCCEEEEE--ECCSS--CEEEEEECSSSSEEEEEETT-------SCEEEEETTTCCEEEEECCCSSCE--EE
T ss_pred             EEEEEECCCCcEEEEE--cCCCC--CEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCEEEEEecCCCCcE--EE
Confidence            6788888776533221  11110  11111112245566666643       368999998765432 22111111  11


Q ss_pred             eEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE--EECCEEEEEeCcccCCCCceeeeeEEE
Q 018336          182 AGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV--VIGSEFWVVSGYKTERQGIFDESAESY  258 (358)
Q Consensus       182 ~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~--~~~~~lyv~gG~~~~~~~~~~~~i~~y  258 (358)
                      .+. .++.+++.|+.+      ..+.+||..+..-...-..... .....+  .-+++.++.|+.+        ..+..|
T Consensus       155 ~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d--------~~i~iw  219 (312)
T 4ery_A          155 VHFNRDGSLIVSSSYD------GLCRIWDTASGQCLKTLIDDDN-PPVSFVKFSPNGKYILAATLD--------NTLKLW  219 (312)
T ss_dssp             EEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCSSC-CCEEEEEECTTSSEEEEEETT--------TEEEEE
T ss_pred             EEEcCCCCEEEEEeCC------CcEEEEECCCCceeeEEeccCC-CceEEEEECCCCCEEEEEcCC--------CeEEEE
Confidence            111 256666776654      3489999987654321111111 111122  2356666666542        357889


Q ss_pred             ECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          259 QLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       259 d~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                      |..+.+-...-...  . ......                    .......++++++.|+.+    ..|.+||..+++
T Consensus       220 d~~~~~~~~~~~~~--~-~~~~~~--------------------~~~~~~~~~~~l~sg~~d----g~i~vwd~~~~~  270 (312)
T 4ery_A          220 DYSKGKCLKTYTGH--K-NEKYCI--------------------FANFSVTGGKWIVSGSED----NLVYIWNLQTKE  270 (312)
T ss_dssp             ETTTTEEEEEECSS--C-CSSSCC--------------------CEEEECSSSCEEEECCTT----SCEEEEETTTCC
T ss_pred             ECCCCcEEEEEEec--C-CceEEE--------------------EEEEEeCCCcEEEEECCC----CEEEEEECCCch
Confidence            98876432211100  0 000000                    011223456777777765    578889988765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=93.79  E-value=1.3  Score=43.36  Aligned_cols=95  Identities=12%  Similarity=0.274  Sum_probs=53.7

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-EC--CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQ--GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF  179 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~--~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~  179 (358)
                      .+..||....++..+..+.....  .. .+++. .+  +.+++.|+.+       ..+.+||..+++|..+..+......
T Consensus        32 ~I~vwd~~~~~~~~~~~l~~h~~--~V-~~l~~s~~~~~~~l~s~s~D-------g~I~vwd~~~~~~~~~~~~~~h~~~  101 (753)
T 3jro_A           32 TIKIFEVEGETHKLIDTLTGHEG--PV-WRVDWAHPKFGTILASCSYD-------GKVLIWKEENGRWSQIAVHAVHSAS  101 (753)
T ss_dssp             EEEEEEEETTEEEEEEEECCCSS--CE-EEEEECCTTSCSEEEEEETT-------SCEEEEEEETTEEEEEEEECCCSSC
T ss_pred             cEEEEecCCCCCccceeccCCcC--ce-EEEEecCCCCCCEEEEEeCC-------CeEEEEECCCCcccccccccCCCCC
Confidence            67788887666665544433211  11 12332 23  5666777643       3689999999887665443322222


Q ss_pred             eeeEEE--C--CEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          180 FAAGEL--N--GRVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       180 ~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                      ...+..  +  +.+++.|+.+      ..+.+||..++
T Consensus       102 V~~v~~sp~~~~~~l~sgs~d------g~I~vwdl~~~  133 (753)
T 3jro_A          102 VNSVQWAPHEYGPLLLVASSD------GKVSVVEFKEN  133 (753)
T ss_dssp             EEEEEECCGGGCSEEEEEETT------SEEEEEECCSS
T ss_pred             eEEEEECCCCCCCEEEEEeCC------CcEEEEEeecC
Confidence            222222  3  5667776644      35889998766

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=93.77  E-value=1  Score=39.25  Aligned_cols=105  Identities=11%  Similarity=0.071  Sum_probs=52.4

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee-eeeEE-E-CCEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF-FAAGE-L-NGRVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~-~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                      ++..++.|+.+       ..+.+||..+++-...  +...... .+.+. . +..+++.|+.+.      .+.+||..+.
T Consensus       138 dg~~l~sgs~d-------~~i~iwd~~~~~~~~~--~~~h~~~V~~~~~~~~~~~~l~s~s~D~------~v~iwd~~~~  202 (344)
T 4gqb_B          138 SGTQAVSGSKD-------ICIKVWDLAQQVVLSS--YRAHAAQVTCVAASPHKDSVFLSCSEDN------RILLWDTRCP  202 (344)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTTEEEEE--ECCCSSCEEEEEECSSCTTEEEEEETTS------CEEEEETTSS
T ss_pred             CCCEEEEEeCC-------CeEEEEECCCCcEEEE--EcCcCCceEEEEecCCCCCceeeecccc------cccccccccc
Confidence            56666666643       3688999988654321  1111111 11222 2 335677766543      4889999876


Q ss_pred             ceEecCCCccCcCceeEEEE---CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          214 EWTELARMTQERDECEAVVI---GSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       214 ~W~~~~~~p~~~~~~~~~~~---~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      +-...-...........+.+   ++++++.|+.+        ..|..||..+++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d--------g~v~~wd~~~~~  248 (344)
T 4gqb_B          203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN--------GTVSLVDTKSTS  248 (344)
T ss_dssp             SCEEECC----CCCEEEEEECSSCTTEEEEEETT--------SEEEEEESCC--
T ss_pred             ceeeeeecceeeccceeeeecCCCCcceEEeccC--------CcEEEEECCCCc
Confidence            54322111111111122222   45677777543        356788887653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=93.60  E-value=1.3  Score=38.46  Aligned_cols=155  Identities=10%  Similarity=0.147  Sum_probs=78.7

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCC--ceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDN--RSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~--~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                      ++.+++.|+.+       ..+.+||..+++|.....+...  ..-.+++. -++..++.|+.+.      .+.++|..++
T Consensus        27 ~g~~las~~~D-------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~------~v~iw~~~~~   93 (345)
T 3fm0_A           27 AGTLLASCGGD-------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA------TTCIWKKNQD   93 (345)
T ss_dssp             TSSCEEEEETT-------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECCC
T ss_pred             CCCEEEEEcCC-------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC------cEEEEEccCC
Confidence            45566666643       3588888888877532211111  11112222 2566667766543      4778888777


Q ss_pred             ceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCC-ceEEcCCccccCCCCCceeeeeecCcc
Q 018336          214 EWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTG-EWKRAENAWKLSQCPRSNVGVGREGKL  290 (358)
Q Consensus       214 ~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~-~W~~~~~~p~~~~~~~~~~~~~~d~~~  290 (358)
                      .++.+..+.........+.+  ++++++.|+.+        ..+..||..+. .+..+..+..    ....+        
T Consensus        94 ~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~----h~~~v--------  153 (345)
T 3fm0_A           94 DFECVTTLEGHENEVKSVAWAPSGNLLATCSRD--------KSVWVWEVDEEDEYECVSVLNS----HTQDV--------  153 (345)
T ss_dssp             -EEEEEEECCCSSCEEEEEECTTSSEEEEEETT--------SCEEEEEECTTSCEEEEEEECC----CCSCE--------
T ss_pred             CeEEEEEccCCCCCceEEEEeCCCCEEEEEECC--------CeEEEEECCCCCCeEEEEEecC----cCCCe--------
Confidence            66544433322222222322  56777777653        24677887654 3333322210    00000        


Q ss_pred             CceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336          291 FCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       291 ~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                                  ......-++++++.|+.+    ..+.+||..+++|..+
T Consensus       154 ------------~~~~~~p~~~~l~s~s~d----~~i~~w~~~~~~~~~~  187 (345)
T 3fm0_A          154 ------------KHVVWHPSQELLASASYD----DTVKLYREEEDDWVCC  187 (345)
T ss_dssp             ------------EEEEECSSSSCEEEEETT----SCEEEEEEETTEEEEE
T ss_pred             ------------EEEEECCCCCEEEEEeCC----CcEEEEEecCCCEEEE
Confidence                        011122356666666654    4677777777777644

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=93.60  E-value=3  Score=40.07  Aligned_cols=152  Identities=13%  Similarity=0.043  Sum_probs=76.3

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCE-EEEEcCcCCCCCCCcceeEEEECCCC-cEEeCCCCCCCc-
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGK-LVVMGGWDPASYSPVSHVFVYDFTTR-RWTRGKNMPDNR-  177 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~-lyv~Gg~~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~~-  177 (358)
                      ..++.+|..+++-..+.......   .....++. -++. |++.. .+...  ....++++|..+. ..+.+....... 
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~-~~~~~--~~~~v~~~d~~~g~~~~~~~~~~~~~~  308 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKE---KFLTNLSWSPDENILYVAE-VNRAQ--NECKVNAYDAETGRFVRTLFVETDKHY  308 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTT---CEEEEEEECTTSSEEEEEE-ECTTS--CEEEEEEEETTTCCEEEEEEEEECSSC
T ss_pred             eEEEEEECCCCceEeeccCCCCc---eeEeeEEEECCCCEEEEEE-eCCCC--CeeEEEEEECCCCceeeEEEEccCCCe
Confidence            56888999888765554321111   11112222 2454 44433 22211  2458999999988 665543111110 


Q ss_pred             e--eeeeEE-E--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CC-EEEEEeCcccCCCC
Q 018336          178 S--FFAAGE-L--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GS-EFWVVSGYKTERQG  249 (358)
Q Consensus       178 ~--~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~-~lyv~gG~~~~~~~  249 (358)
                      .  ....+. -  ++++++.+..+.    ...++.++......+.+..-....  ...+.+  ++ .||+.+.....   
T Consensus       309 ~~~~~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~~~~v--~~~~~~spdg~~l~~~~~~~~~---  379 (706)
T 2z3z_A          309 VEPLHPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKGEWEV--TNFAGFDPKGTRLYFESTEASP---  379 (706)
T ss_dssp             CCCCSCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCSSSCE--EEEEEECTTSSEEEEEESSSCT---
T ss_pred             ECccCCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCCCeEE--EeeeEEcCCCCEEEEEecCCCC---
Confidence            0  011122 2  677665554332    356888887777676664322111  111222  44 46666644221   


Q ss_pred             ceeeeeEEEECCCCceEEcC
Q 018336          250 IFDESAESYQLGTGEWKRAE  269 (358)
Q Consensus       250 ~~~~~i~~yd~~~~~W~~~~  269 (358)
                       ....++.+|..+++...+.
T Consensus       380 -~~~~l~~~d~~~~~~~~l~  398 (706)
T 2z3z_A          380 -LERHFYCIDIKGGKTKDLT  398 (706)
T ss_dssp             -TCBEEEEEETTCCCCEESC
T ss_pred             -ceEEEEEEEcCCCCceecc
Confidence             1346888898887766554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=93.56  E-value=3  Score=35.29  Aligned_cols=191  Identities=12%  Similarity=0.032  Sum_probs=92.9

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCC-CCc---
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMP-DNR---  177 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~~---  177 (358)
                      .++.||+ ++....+.....      ...+++. -++.+|+....       ...+.+||+. .+.+.+.... ..+   
T Consensus        68 ~i~~~~~-~g~~~~~~~~~~------~~~gl~~d~dG~l~v~~~~-------~~~v~~~~~~-g~~~~~~~~~~~~~~~~  132 (305)
T 3dr2_A           68 RVLGWRE-DGTVDVLLDATA------FTNGNAVDAQQRLVHCEHG-------RRAITRSDAD-GQAHLLVGRYAGKRLNS  132 (305)
T ss_dssp             EEEEEET-TSCEEEEEESCS------CEEEEEECTTSCEEEEETT-------TTEEEEECTT-SCEEEEECEETTEECSC
T ss_pred             EEEEEeC-CCCEEEEeCCCC------ccceeeECCCCCEEEEECC-------CCEEEEECCC-CCEEEEEeccCCCccCC
Confidence            6778888 444443322111      1123332 25778776431       2468899886 6665543211 111   


Q ss_pred             eeeeeEEECCEEEEE----cCcCC-------CCCCCCeEEEEECCCCceEecCCCccCcCceeEEE-ECCE-EEEEeCcc
Q 018336          178 SFFAAGELNGRVIIA----GGHDE-------NKTALSSAWAYDLIKDEWTELARMTQERDECEAVV-IGSE-FWVVSGYK  244 (358)
Q Consensus       178 ~~~~~~~~~~~iyv~----GG~~~-------~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~-~~~~-lyv~gG~~  244 (358)
                      .......-++.+|+.    |....       .......++.||+.+++.+.+.  ... ....++. -+++ ||+.....
T Consensus       133 ~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~-~p~gl~~spdg~~lyv~~~~~  209 (305)
T 3dr2_A          133 PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD-HPNGLAFSPDEQTLYVSQTPE  209 (305)
T ss_dssp             CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES-SEEEEEECTTSSEEEEEECCC
T ss_pred             CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC-CCcceEEcCCCCEEEEEecCC
Confidence            111222236788886    32211       0011357999999888887654  111 1112222 2454 78775421


Q ss_pred             cCCCCceeeeeEEEECCCCceEEcCCcccc-CCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC
Q 018336          245 TERQGIFDESAESYQLGTGEWKRAENAWKL-SQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG  323 (358)
Q Consensus       245 ~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~-~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~  323 (358)
                      ...   ....+++||+..+.......+... ...+.                        .-++..+++||+..+     
T Consensus       210 ~~~---~~~~i~~~~~~~~~l~~~~~~~~~~~~~pd------------------------gi~~d~~G~lwv~~~-----  257 (305)
T 3dr2_A          210 QGH---GSVEITAFAWRDGALHDRRHFASVPDGLPD------------------------GFCVDRGGWLWSSSG-----  257 (305)
T ss_dssp             ------CCCEEEEEEEETTEEEEEEEEECCSSSCCC------------------------SEEECTTSCEEECCS-----
T ss_pred             cCC---CCCEEEEEEecCCCccCCeEEEECCCCCCC------------------------eEEECCCCCEEEecC-----
Confidence            100   024688888876542211111000 00010                        012334577777653     


Q ss_pred             CceEEEEECCCCceEeecCCC
Q 018336          324 PQEFYVVEGRNGKFRKFDVPA  344 (358)
Q Consensus       324 ~~~i~~yd~~~~~W~~~~~p~  344 (358)
                       ..|++||++...-..+.+|.
T Consensus       258 -~gv~~~~~~g~~~~~~~~~~  277 (305)
T 3dr2_A          258 -TGVCVFDSDGQLLGHIPTPG  277 (305)
T ss_dssp             -SEEEEECTTSCEEEEEECSS
T ss_pred             -CcEEEECCCCCEEEEEECCC
Confidence             46899999766666665554

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=93.54  E-value=2.7  Score=36.40  Aligned_cols=99  Identities=10%  Similarity=-0.003  Sum_probs=49.5

Q ss_pred             cceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCccee--EEEECCCCcEEeCCCCCCCc
Q 018336          101 SYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHV--FVYDFTTRRWTRGKNMPDNR  177 (358)
Q Consensus       101 ~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~--~~yd~~t~~W~~~~~~~~~~  177 (358)
                      ...++.+|+.+++...+.......   +.+ .+..- +..||+.+.....    ...+  |.+|..+.+.+.+...+...
T Consensus        28 ~i~~~~~d~~~g~~~~~~~~~~~~---p~~-l~~spdg~~l~~~~~~~~~----~~~v~~~~~~~~~g~~~~~~~~~~~~   99 (361)
T 3scy_A           28 GIYTFRFNEETGESLPLSDAEVAN---PSY-LIPSADGKFVYSVNEFSKD----QAAVSAFAFDKEKGTLHLLNTQKTMG   99 (361)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSC---CCS-EEECTTSSEEEEEECCSST----TCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred             CEEEEEEeCCCCCEEEeecccCCC---Cce-EEECCCCCEEEEEEccCCC----CCcEEEEEEeCCCCcEEEeeEeccCC
Confidence            356777899988887765431111   111 12222 3457777653211    2244  55566657776664433221


Q ss_pred             -eeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          178 -SFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       178 -~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                       .....+.-+..+|+....      ...+.+|+..++
T Consensus       100 ~~p~~~~~dg~~l~~~~~~------~~~v~~~~~~~~  130 (361)
T 3scy_A          100 ADPCYLTTNGKNIVTANYS------GGSITVFPIGQD  130 (361)
T ss_dssp             SCEEEEEECSSEEEEEETT------TTEEEEEEBCTT
T ss_pred             CCcEEEEECCCEEEEEECC------CCEEEEEEeCCC
Confidence             122222333456665421      246888888643

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=93.49  E-value=4.1  Score=36.60  Aligned_cols=147  Identities=17%  Similarity=0.222  Sum_probs=79.7

Q ss_pred             ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          136 SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       136 ~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      .++.+++.|+.+       ..+.+||..+.+-...-....... .+.+. .++..++.|+.+      ..+.+||..+++
T Consensus       278 ~~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~sg~~d------g~i~vwd~~~~~  343 (464)
T 3v7d_B          278 GHGNIVVSGSYD-------NTLIVWDVAQMKCLYILSGHTDRI-YSTIYDHERKRCISASMD------TTIRIWDLENGE  343 (464)
T ss_dssp             EETTEEEEEETT-------SCEEEEETTTTEEEEEECCCSSCE-EEEEEETTTTEEEEEETT------SCEEEEETTTTE
T ss_pred             CCCCEEEEEeCC-------CeEEEEECCCCcEEEEecCCCCCE-EEEEEcCCCCEEEEEeCC------CcEEEEECCCCc
Confidence            344555555533       368999998765432211111111 12222 245566666544      349999998764


Q ss_pred             eEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCcee
Q 018336          215 WTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWA  294 (358)
Q Consensus       215 W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~  294 (358)
                      -.  ..+.........+..++..++.|+.+        ..+.+||+.+..-......     ..                
T Consensus       344 ~~--~~~~~h~~~v~~~~~~~~~l~s~s~d--------g~v~vwd~~~~~~~~~~~~-----~~----------------  392 (464)
T 3v7d_B          344 LM--YTLQGHTALVGLLRLSDKFLVSAAAD--------GSIRGWDANDYSRKFSYHH-----TN----------------  392 (464)
T ss_dssp             EE--EEECCCSSCEEEEEECSSEEEEEETT--------SEEEEEETTTCCEEEEEEC-----TT----------------
T ss_pred             EE--EEEeCCCCcEEEEEEcCCEEEEEeCC--------CcEEEEECCCCceeeeecC-----CC----------------
Confidence            32  22222222334456677777777653        3578899987642211111     00                


Q ss_pred             ccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceE
Q 018336          295 ETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFR  338 (358)
Q Consensus       295 ~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~  338 (358)
                            .........++++++.|+.     ..+.+||..+++--
T Consensus       393 ------~~~~~~~~~~~~~l~~~~d-----g~i~iwd~~~g~~~  425 (464)
T 3v7d_B          393 ------LSAITTFYVSDNILVSGSE-----NQFNIYNLRSGKLV  425 (464)
T ss_dssp             ------CCCEEEEEECSSEEEEEET-----TEEEEEETTTCCEE
T ss_pred             ------CccEEEEEeCCCEEEEecC-----CeEEEEECCCCcEE
Confidence                  0112245567788787773     58999999988644

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=93.45  E-value=2.4  Score=36.35  Aligned_cols=103  Identities=8%  Similarity=0.127  Sum_probs=53.3

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++.+++.|+.+       ..+.+||..+.+-.. +..-+...  .+++. -++..++.|+.+      ..+.+||..++.
T Consensus        91 ~~~~l~s~s~D-------~~i~lWd~~~~~~~~~~~~~~~~~--~~~~~spdg~~l~~g~~d------g~v~i~~~~~~~  155 (321)
T 3ow8_A           91 TLPIAASSSLD-------AHIRLWDLENGKQIKSIDAGPVDA--WTLAFSPDSQYLATGTHV------GKVNIFGVESGK  155 (321)
T ss_dssp             SSSEEEEEETT-------SEEEEEETTTTEEEEEEECCTTCC--CCEEECTTSSEEEEECTT------SEEEEEETTTCS
T ss_pred             CCCEEEEEeCC-------CcEEEEECCCCCEEEEEeCCCccE--EEEEECCCCCEEEEEcCC------CcEEEEEcCCCc
Confidence            44566666543       368899988765432 21111111  11222 255666666543      358889987764


Q ss_pred             eEecCCCccCcCceeEE--EECCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          215 WTELARMTQERDECEAV--VIGSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       215 W~~~~~~p~~~~~~~~~--~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      -...-  .........+  .-++++++.|+.+        ..+..||..+++
T Consensus       156 ~~~~~--~~~~~~v~~~~~spdg~~lasg~~d--------g~i~iwd~~~~~  197 (321)
T 3ow8_A          156 KEYSL--DTRGKFILSIAYSPDGKYLASGAID--------GIINIFDIATGK  197 (321)
T ss_dssp             EEEEE--ECSSSCEEEEEECTTSSEEEEEETT--------SCEEEEETTTTE
T ss_pred             eeEEe--cCCCceEEEEEECCCCCEEEEEcCC--------CeEEEEECCCCc
Confidence            32211  1111111122  2366777777653        356789988764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=93.44  E-value=1.5  Score=37.42  Aligned_cols=111  Identities=12%  Similarity=0.007  Sum_probs=53.0

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECC--CCcEEeCCCCCCCceeeeeEE-ECC-EEEEEcCcCCCCCCCCeEEEEECCC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFT--TRRWTRGKNMPDNRSFFAAGE-LNG-RVIIAGGHDENKTALSSAWAYDLIK  212 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~--t~~W~~~~~~~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t  212 (358)
                      +..||+.+..       ...+.+|+..  +.+++.+..++....-...+. -++ .+|+.+..      ...+.+||...
T Consensus        49 g~~l~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------~~~i~~~d~~~  115 (343)
T 1ri6_A           49 KRYLYVGVRP-------EFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN------AGNVSVTRLED  115 (343)
T ss_dssp             SSEEEEEETT-------TTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT------TTEEEEEEEET
T ss_pred             CCEEEEeecC-------CCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecC------CCeEEEEECCC
Confidence            3456666542       1367777766  777776543332221122222 234 46666431      14588888742


Q ss_pred             Cc-eEecCCCccCcCceeEE-EECC-EEEEEeCcccCCCCceeeeeEEEECCC-CceEEc
Q 018336          213 DE-WTELARMTQERDECEAV-VIGS-EFWVVSGYKTERQGIFDESAESYQLGT-GEWKRA  268 (358)
Q Consensus       213 ~~-W~~~~~~p~~~~~~~~~-~~~~-~lyv~gG~~~~~~~~~~~~i~~yd~~~-~~W~~~  268 (358)
                      +. .+.+...+.......++ .-++ .+|+.+..        ...+.+||..+ ++...+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--------~~~v~~~d~~~~~~~~~~  167 (343)
T 1ri6_A          116 GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK--------QDRICLFTVSDDGHLVAQ  167 (343)
T ss_dssp             TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG--------GTEEEEEEECTTSCEEEE
T ss_pred             CccccccccccCCCCceEEEECCCCCEEEEecCC--------CCEEEEEEecCCCceeee
Confidence            22 22222222111112222 2244 46665422        23578899887 666543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=93.36  E-value=0.43  Score=41.02  Aligned_cols=68  Identities=15%  Similarity=0.154  Sum_probs=39.8

Q ss_pred             ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECC-EEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          136 SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNG-RVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       136 ~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                      .++.+|+.++.       ...++++|..+.+....-+.+........+. -++ .+|+.+..      ...+.+||+.++
T Consensus         9 ~~~~~~v~~~~-------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~------~~~i~~~d~~t~   75 (349)
T 1jmx_B            9 AGHEYMIVTNY-------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH------YGDIYGIDLDTC   75 (349)
T ss_dssp             TTCEEEEEEET-------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT------TTEEEEEETTTT
T ss_pred             CCCEEEEEeCC-------CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC------CCcEEEEeCCCC
Confidence            36677877753       3479999999887643222222001122222 234 57777532      246999999887


Q ss_pred             ceE
Q 018336          214 EWT  216 (358)
Q Consensus       214 ~W~  216 (358)
                      +-.
T Consensus        76 ~~~   78 (349)
T 1jmx_B           76 KNT   78 (349)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=93.31  E-value=1.7  Score=38.40  Aligned_cols=93  Identities=8%  Similarity=0.060  Sum_probs=52.9

Q ss_pred             ceeEEEECCCCcEEeCCCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE
Q 018336          155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI  233 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~  233 (358)
                      ..+.+||..+.+............-.+++.. ++..+++|+.+      ..+.+||..++.-...  +.........+..
T Consensus       113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~  184 (401)
T 4aez_A          113 RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN------GLVDIYDVESQTKLRT--MAGHQARVGCLSW  184 (401)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEE--ECCCSSCEEEEEE
T ss_pred             CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC------CeEEEEECcCCeEEEE--ecCCCCceEEEEE
Confidence            4799999998887654333222212222222 56666666543      3589999987754322  1122222334455


Q ss_pred             CCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          234 GSEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       234 ~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      ++++++.|+.+        ..+..||....
T Consensus       185 ~~~~l~~~~~d--------g~i~i~d~~~~  206 (401)
T 4aez_A          185 NRHVLSSGSRS--------GAIHHHDVRIA  206 (401)
T ss_dssp             ETTEEEEEETT--------SEEEEEETTSS
T ss_pred             CCCEEEEEcCC--------CCEEEEecccC
Confidence            77777777653        35778888743

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=93.24  E-value=3.9  Score=35.62  Aligned_cols=133  Identities=6%  Similarity=-0.002  Sum_probs=68.5

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCce-e
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRS-F  179 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~-~  179 (358)
                      .+..||..+.+...........   ..-.+++..  ++.+++.|+.+       ..+.+||..+.....+........ -
T Consensus        97 ~i~iwd~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~v  166 (383)
T 3ei3_B           97 DIILWDYDVQNKTSFIQGMGPG---DAITGMKFNQFNTNQLFVSSIR-------GATTLRDFSGSVIQVFAKTDSWDYWY  166 (383)
T ss_dssp             CEEEEETTSTTCEEEECCCSTT---CBEEEEEEETTEEEEEEEEETT-------TEEEEEETTSCEEEEEECCCCSSCCE
T ss_pred             eEEEEeCCCcccceeeecCCcC---CceeEEEeCCCCCCEEEEEeCC-------CEEEEEECCCCceEEEeccCCCCCCe
Confidence            6788999887766543321111   111233333  34566666542       378999998776655533221111 1


Q ss_pred             eeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCE-EEEEeCcccCCCCceeeee
Q 018336          180 FAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSE-FWVVSGYKTERQGIFDESA  255 (358)
Q Consensus       180 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~-lyv~gG~~~~~~~~~~~~i  255 (358)
                      .+++. -++..++.|+.+      ..+.+||.....-..+....   .....+.+  +++ +++.|+.+        ..+
T Consensus       167 ~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~d--------~~i  229 (383)
T 3ei3_B          167 CCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKLHK---AKVTHAEFNPRCDWLMATSSVD--------ATV  229 (383)
T ss_dssp             EEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEECSS---SCEEEEEECSSCTTEEEEEETT--------SEE
T ss_pred             EEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEeccCC---CcEEEEEECCCCCCEEEEEeCC--------CEE
Confidence            12222 255666666543      46899998544333332211   11222222  344 66666542        356


Q ss_pred             EEEECCC
Q 018336          256 ESYQLGT  262 (358)
Q Consensus       256 ~~yd~~~  262 (358)
                      ..||..+
T Consensus       230 ~iwd~~~  236 (383)
T 3ei3_B          230 KLWDLRN  236 (383)
T ss_dssp             EEEEGGG
T ss_pred             EEEeCCC
Confidence            7888876

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=93.07  E-value=5.9  Score=37.23  Aligned_cols=120  Identities=10%  Similarity=0.130  Sum_probs=71.9

Q ss_pred             EEEECCEEEEEcCcCCCCCCCcceeEEEEC-CCCc--EEeCCCCCCC--------ceeeeeEEECCEEEEEcCcCCCCCC
Q 018336          133 VASSQGKLVVMGGWDPASYSPVSHVFVYDF-TTRR--WTRGKNMPDN--------RSFFAAGELNGRVIIAGGHDENKTA  201 (358)
Q Consensus       133 ~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~-~t~~--W~~~~~~~~~--------~~~~~~~~~~~~iyv~GG~~~~~~~  201 (358)
                      .++.++.||+....       ...++.+|. .+.+  |+.-...+..        ....+.++.++.+|+...       
T Consensus        58 P~v~~g~vyv~~~~-------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------  123 (571)
T 2ad6_A           58 PLVIGDMMYVHSAF-------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------  123 (571)
T ss_dssp             CEEETTEEEEECST-------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------
T ss_pred             cEEECCEEEEEeCC-------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------
Confidence            44579999998652       236899998 7764  8764332211        112245567899988732       


Q ss_pred             CCeEEEEECCCC--ceEec-CCCccC-cCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc--eEEcC
Q 018336          202 LSSAWAYDLIKD--EWTEL-ARMTQE-RDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE--WKRAE  269 (358)
Q Consensus       202 ~~~~~~yd~~t~--~W~~~-~~~p~~-~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~~~  269 (358)
                      -..++++|.+++  .|+.- ...+.. ......++.++++|+-.+.....   ....+.+||..+++  |+.-.
T Consensus       124 dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~---~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          124 NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELG---VRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGT---CCCEEEEEETTTCCEEEEEES
T ss_pred             CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccC---CCCEEEEEECCCCcEEEEEcc
Confidence            246999999877  58753 221111 11223356789888765321110   13478999999875  87543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=93.05  E-value=4.7  Score=35.99  Aligned_cols=145  Identities=9%  Similarity=-0.052  Sum_probs=79.1

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCE-EEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGK-LVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF  179 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~-lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~  179 (358)
                      ..++.+|..+++...+.....     . ...++. -++. |++.+..++     ...++++|..+..-+.+....  ...
T Consensus       247 ~~i~~~d~~~~~~~~l~~~~~-----~-~~~~~~spdg~~l~~~s~~~g-----~~~i~~~d~~~~~~~~l~~~~--~~~  313 (415)
T 2hqs_A          247 LNLYVMDLASGQIRQVTDGRS-----N-NTEPTWFPDSQNLAFTSDQAG-----RPQVYKVNINGGAPQRITWEG--SQN  313 (415)
T ss_dssp             CEEEEEETTTCCEEECCCCSS-----C-EEEEEECTTSSEEEEEECTTS-----SCEEEEEETTSSCCEECCCSS--SEE
T ss_pred             ceEEEEECCCCCEEeCcCCCC-----c-ccceEECCCCCEEEEEECCCC-----CcEEEEEECCCCCEEEEecCC--Ccc
Confidence            358889998888766654332     1 112222 2444 444432211     347999999887755543221  111


Q ss_pred             eeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE-EECCEEEEEeCcccCCCCceeeeeEE
Q 018336          180 FAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV-VIGSEFWVVSGYKTERQGIFDESAES  257 (358)
Q Consensus       180 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~  257 (358)
                      ...+. -+++.+++++....   ...++++|+.++..+.+....   .....+ .-+|+.+++++....     ...++.
T Consensus       314 ~~~~~spdG~~l~~~~~~~g---~~~i~~~d~~~~~~~~l~~~~---~~~~~~~spdg~~l~~~s~~~~-----~~~l~~  382 (415)
T 2hqs_A          314 QDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLSSTF---LDETPSLAPNGTMVIYSSSQGM-----GSVLNL  382 (415)
T ss_dssp             EEEEECTTSSEEEEEEECSS---CEEEEEEETTTCCEEECCCSS---SCEEEEECTTSSEEEEEEEETT-----EEEEEE
T ss_pred             cCeEECCCCCEEEEEECcCC---ceEEEEEECCCCCEEEecCCC---CcCCeEEcCCCCEEEEEEcCCC-----ccEEEE
Confidence            22222 24544444333221   357999999998887665332   112222 336776666654321     347899


Q ss_pred             EECCCCceEEcCC
Q 018336          258 YQLGTGEWKRAEN  270 (358)
Q Consensus       258 yd~~~~~W~~~~~  270 (358)
                      +|...+....+..
T Consensus       383 ~d~~g~~~~~l~~  395 (415)
T 2hqs_A          383 VSTDGRFKARLPA  395 (415)
T ss_dssp             EETTSCCEEECCC
T ss_pred             EECCCCcEEEeeC
Confidence            9998877776654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=93.01  E-value=1.9  Score=36.30  Aligned_cols=142  Identities=11%  Similarity=0.120  Sum_probs=68.2

Q ss_pred             eEEEEeCCCCCeeec-CCCCCCCCCCCceeEEEE-ECCEEEEEcCcCC--------CCCCCcceeEEEECCCCcEEeCC-
Q 018336          103 GVTVFDPVSLTWDRL-GPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDP--------ASYSPVSHVFVYDFTTRRWTRGK-  171 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~-~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~--------~~~~~~~~~~~yd~~t~~W~~~~-  171 (358)
                      .+..||+. ++...+ ......... .....++. -++.+|+......        ........+++||+. .+...+. 
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRM-QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBC-BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccc-cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence            67889998 776655 322111100 01113333 3677888754221        001123579999986 5554431 


Q ss_pred             CCCCCceeeeeEEE-----CC-EEEEEcCcCCCCCCCCeEEEEECC-CCceEec---CCCccCc-CceeEEEE--CCEEE
Q 018336          172 NMPDNRSFFAAGEL-----NG-RVIIAGGHDENKTALSSAWAYDLI-KDEWTEL---ARMTQER-DECEAVVI--GSEFW  238 (358)
Q Consensus       172 ~~~~~~~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~---~~~p~~~-~~~~~~~~--~~~ly  238 (358)
                      .+..+   ...+..     ++ .+|+....      ...+.+||+. +++....   ..++... .....+.+  +|++|
T Consensus       170 ~~~~~---~~i~~~~~~d~dg~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~  240 (314)
T 1pjx_A          170 AFQFP---NGIAVRHMNDGRPYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL  240 (314)
T ss_dssp             EESSE---EEEEEEECTTSCEEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred             CCCCc---ceEEEecccCCCCCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence            11111   222333     33 57776422      2468889875 4443221   1222111 11222232  57788


Q ss_pred             EEeCcccCCCCceeeeeEEEECCCCc
Q 018336          239 VVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       239 v~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      +....        ...+.+||+.+++
T Consensus       241 v~~~~--------~~~i~~~d~~~g~  258 (314)
T 1pjx_A          241 VANWG--------SSHIEVFGPDGGQ  258 (314)
T ss_dssp             EEEET--------TTEEEEECTTCBS
T ss_pred             EEEcC--------CCEEEEEcCCCCc
Confidence            87522        2357889988554

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=92.96  E-value=3.9  Score=34.91  Aligned_cols=135  Identities=9%  Similarity=0.119  Sum_probs=67.3

Q ss_pred             ceEEEEeCCCCCeeec-CCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          102 YGVTVFDPVSLTWDRL-GPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      ..+..+|..+++-... ..-+.     ........-++..++.|+.+       ..+.+||..+.+-...-... ...-.
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~g~~d-------g~v~i~~~~~~~~~~~~~~~-~~~v~  168 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPV-----DAWTLAFSPDSQYLATGTHV-------GKVNIFGVESGKKEYSLDTR-GKFIL  168 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTT-----CCCCEEECTTSSEEEEECTT-------SEEEEEETTTCSEEEEEECS-SSCEE
T ss_pred             CcEEEEECCCCCEEEEEeCCCc-----cEEEEEECCCCCEEEEEcCC-------CcEEEEEcCCCceeEEecCC-CceEE
Confidence            3577888877654322 11111     11112222355666666542       36888888776532211111 11111


Q ss_pred             eeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE--EECCEEEEEeCcccCCCCceeeeeEE
Q 018336          181 AAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV--VIGSEFWVVSGYKTERQGIFDESAES  257 (358)
Q Consensus       181 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~--~~~~~lyv~gG~~~~~~~~~~~~i~~  257 (358)
                      +++. -+++.++.|+.+      ..+.+||..+++-...  +.........+  .-++++++.|+.+        ..+..
T Consensus       169 ~~~~spdg~~lasg~~d------g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~d--------g~i~i  232 (321)
T 3ow8_A          169 SIAYSPDGKYLASGAID------GIINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASDD--------GYIKI  232 (321)
T ss_dssp             EEEECTTSSEEEEEETT------SCEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECTT--------SCEEE
T ss_pred             EEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcCC--------CeEEE
Confidence            2222 256666776654      3489999988753221  11111111122  2367777777653        24678


Q ss_pred             EECCCCce
Q 018336          258 YQLGTGEW  265 (358)
Q Consensus       258 yd~~~~~W  265 (358)
                      ||..+.+.
T Consensus       233 wd~~~~~~  240 (321)
T 3ow8_A          233 YDVQHANL  240 (321)
T ss_dssp             EETTTCCE
T ss_pred             EECCCcce
Confidence            99887654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=92.94  E-value=4  Score=35.76  Aligned_cols=91  Identities=11%  Similarity=0.096  Sum_probs=44.8

Q ss_pred             ceeEEEECCCCcEEe-CCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEe-cCCCccCcCceeEE
Q 018336          155 SHVFVYDFTTRRWTR-GKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTE-LARMTQERDECEAV  231 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~p~~~~~~~~~  231 (358)
                      ..+.+||..+.+-.. +.....  .-..++. -++..++.|+.+      ..+.+||..+..-.. +....  .....+.
T Consensus       227 g~i~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~--~~i~~~~  296 (425)
T 1r5m_A          227 GAIFVYQITEKTPTGKLIGHHG--PISVLEFNDTNKLLLSASDD------GTLRIWHGGNGNSQNCFYGHS--QSIVSAS  296 (425)
T ss_dssp             GCEEEEETTCSSCSEEECCCSS--CEEEEEEETTTTEEEEEETT------SCEEEECSSSBSCSEEECCCS--SCEEEEE
T ss_pred             CeEEEEEcCCCceeeeeccCCC--ceEEEEECCCCCEEEEEcCC------CEEEEEECCCCccceEecCCC--ccEEEEE
Confidence            478999998754321 111111  1112222 245566666543      358889987654221 11111  1112233


Q ss_pred             EE-CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          232 VI-GSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       232 ~~-~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      .. ++ +++.++.        ...+..||..+.+
T Consensus       297 ~~~~~-~l~~~~~--------d~~i~i~d~~~~~  321 (425)
T 1r5m_A          297 WVGDD-KVISCSM--------DGSVRLWSLKQNT  321 (425)
T ss_dssp             EETTT-EEEEEET--------TSEEEEEETTTTE
T ss_pred             ECCCC-EEEEEeC--------CCcEEEEECCCCc
Confidence            33 44 5555543        2357889988764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=92.89  E-value=2.4  Score=37.48  Aligned_cols=104  Identities=12%  Similarity=0.147  Sum_probs=54.3

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      ++.+++.|+.+       ..+.+||..+.+-...-.. ....-.+++.. ++.+++.|+.+      ..+.+||..+.+-
T Consensus       108 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~~~  173 (420)
T 3vl1_A          108 QMRRFILGTTE-------GDIKVLDSNFNLQREIDQA-HVSEITKLKFFPSGEALISSSQD------MQLKIWSVKDGSN  173 (420)
T ss_dssp             SSCEEEEEETT-------SCEEEECTTSCEEEEETTS-SSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCC
T ss_pred             CCCEEEEEECC-------CCEEEEeCCCcceeeeccc-ccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCCCcC
Confidence            56677777643       3689999887655433211 11111122222 55566666543      3599999976532


Q ss_pred             EecCCCccCcCce-eEEEE-CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          216 TELARMTQERDEC-EAVVI-GSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       216 ~~~~~~p~~~~~~-~~~~~-~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      .  ..+....... .+... +++.++.|+.+        ..+..||..+++
T Consensus       174 ~--~~~~~h~~~v~~~~~~~~~~~l~s~~~d--------~~v~iwd~~~~~  214 (420)
T 3vl1_A          174 P--RTLIGHRATVTDIAIIDRGRNVLSASLD--------GTIRLWECGTGT  214 (420)
T ss_dssp             C--EEEECCSSCEEEEEEETTTTEEEEEETT--------SCEEEEETTTTE
T ss_pred             c--eEEcCCCCcEEEEEEcCCCCEEEEEcCC--------CcEEEeECCCCc
Confidence            1  1111111111 22222 56666676543        246789988764

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=92.85  E-value=4.5  Score=38.02  Aligned_cols=121  Identities=12%  Similarity=0.162  Sum_probs=70.2

Q ss_pred             eeEEECCEEEEEcCcCCCCCCCCeEEEEEC-CCC--ceEecCCCccC--------cCceeEEEECCEEEEEeCcccCCCC
Q 018336          181 AAGELNGRVIIAGGHDENKTALSSAWAYDL-IKD--EWTELARMTQE--------RDECEAVVIGSEFWVVSGYKTERQG  249 (358)
Q Consensus       181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~-~t~--~W~~~~~~p~~--------~~~~~~~~~~~~lyv~gG~~~~~~~  249 (358)
                      +.++.++.+|+....      ...++++|. .++  .|+.-...+..        ......++.+++||+...       
T Consensus        57 ~P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------  123 (571)
T 2ad6_A           57 APLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------  123 (571)
T ss_dssp             CCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------
T ss_pred             ccEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------
Confidence            345679999998542      245999998 766  49864432211        111234577899988753       


Q ss_pred             ceeeeeEEEECCCCc--eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCC-CCCce
Q 018336          250 IFDESAESYQLGTGE--WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQ-GGPQE  326 (358)
Q Consensus       250 ~~~~~i~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~-~~~~~  326 (358)
                        ...++++|..+++  |+.-..-+... ..                       ...+.+..+++||+-.+... .....
T Consensus       124 --dg~l~alD~~tG~~~W~~~~~~~~~~-~~-----------------------~~~~P~v~~g~v~vg~~~~~~~~~g~  177 (571)
T 2ad6_A          124 --NGHLLALDAKTGKINWEVEVCDPKVG-ST-----------------------LTQAPFVAKDTVLMGCSGAELGVRGA  177 (571)
T ss_dssp             --TSEEEEEETTTCCEEEEEECCCGGGT-CB-----------------------CCSCCEEETTEEEEECBCGGGTCCCE
T ss_pred             --CCEEEEEECCCCCEEEEecCCCCCcc-ce-----------------------eccCCEEECCEEEEEecCCccCCCCE
Confidence              2357899998874  87532211000 00                       00112446888887654211 01158


Q ss_pred             EEEEECCCCc--eEee
Q 018336          327 FYVVEGRNGK--FRKF  340 (358)
Q Consensus       327 i~~yd~~~~~--W~~~  340 (358)
                      ++.||.++++  |+.-
T Consensus       178 v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          178 VNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCcEEEEEc
Confidence            9999998766  8754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=92.81  E-value=2.9  Score=36.83  Aligned_cols=108  Identities=11%  Similarity=0.084  Sum_probs=55.1

Q ss_pred             EEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCC-CCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceE
Q 018336          139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKN-MPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWT  216 (358)
Q Consensus       139 ~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~-~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  216 (358)
                      .+++.|+.+       ..+.+||..+.+....-. ......-.+++.. ++..++.|+.+      ..+.+||+.++.-.
T Consensus       145 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~  211 (402)
T 2aq5_A          145 NVLLSAGCD-------NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD------KRVRVIEPRKGTVV  211 (402)
T ss_dssp             TEEEEEETT-------SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT------SEEEEEETTTTEEE
T ss_pred             CEEEEEcCC-------CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC------CcEEEEeCCCCcee
Confidence            466666643       368999998876543211 1111111222222 56666666543      46999999886543


Q ss_pred             ecC--CCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          217 ELA--RMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       217 ~~~--~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      ..-  .............-++++++.|. ....    ...+..||..+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~-~~~~----d~~i~iwd~~~~~  256 (402)
T 2aq5_A          212 AEKDRPHEGTRPVHAVFVSEGKILTTGF-SRMS----ERQVALWDTKHLE  256 (402)
T ss_dssp             EEEECSSCSSSCCEEEECSTTEEEEEEE-CTTC----CEEEEEEETTBCS
T ss_pred             eeeccCCCCCcceEEEEcCCCcEEEEec-cCCC----CceEEEEcCcccc
Confidence            221  11111111222234667666652 1111    3467889987653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=92.72  E-value=3  Score=36.77  Aligned_cols=108  Identities=11%  Similarity=0.072  Sum_probs=55.9

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-----CCCCCCCcee-eeeEEE-CC-EEEEEcCcCCCCCCCCeEEEE
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-----GKNMPDNRSF-FAAGEL-NG-RVIIAGGHDENKTALSSAWAY  208 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-----~~~~~~~~~~-~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~y  208 (358)
                      ++.+++.|+.+       ..+.+||..++....     +..+...... .+++.. ++ .+++.|+.+      ..+.+|
T Consensus        93 ~~~~l~s~s~d-------g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d------g~i~iw  159 (402)
T 2aq5_A           93 NDNVIASGSED-------CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD------NVILVW  159 (402)
T ss_dssp             CTTEEEEEETT-------SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT------SCEEEE
T ss_pred             CCCEEEEEeCC-------CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC------CEEEEE
Confidence            56677777643       368999988765421     1111111111 112222 33 466666654      349999


Q ss_pred             ECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCce
Q 018336          209 DLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEW  265 (358)
Q Consensus       209 d~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W  265 (358)
                      |..++.....-...........+.+  ++++++.|+.+        ..+.+||+.+++-
T Consensus       160 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~  210 (402)
T 2aq5_A          160 DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD--------KRVRVIEPRKGTV  210 (402)
T ss_dssp             ETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT--------SEEEEEETTTTEE
T ss_pred             ECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC--------CcEEEEeCCCCce
Confidence            9988765422110111111222333  66677776542        3578899987653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=92.63  E-value=3.4  Score=39.86  Aligned_cols=118  Identities=16%  Similarity=0.167  Sum_probs=71.7

Q ss_pred             EEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCC--------ceeeeeEEECCEEEEEcCcCCCCCCC
Q 018336          133 VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDN--------RSFFAAGELNGRVIIAGGHDENKTAL  202 (358)
Q Consensus       133 ~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~--------~~~~~~~~~~~~iyv~GG~~~~~~~~  202 (358)
                      -++.++.||+...        ...++.+|..|.+  |+.-...+..        ....+.++.++.||+...       -
T Consensus        66 P~v~~g~vyv~~~--------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------d  130 (689)
T 1yiq_A           66 PIVVDGVMYTTGP--------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------D  130 (689)
T ss_dssp             CEEETTEEEEECG--------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------T
T ss_pred             CEEECCEEEEEcC--------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------C
Confidence            3467999999865        3468999988764  8764432211        112234567888888642       2


Q ss_pred             CeEEEEECCCCc--eEecCC-Ccc--CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc--eEEc
Q 018336          203 SSAWAYDLIKDE--WTELAR-MTQ--ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE--WKRA  268 (358)
Q Consensus       203 ~~~~~yd~~t~~--W~~~~~-~p~--~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~~  268 (358)
                      ..++++|.+|++  |+.-.. -+.  .....+.++.++.+|+-.+....   .....+.+||..+++  |+.-
T Consensus       131 g~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~---~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          131 GRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEF---GVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             SEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTT---CCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCcc---CCCCEEEEEECCCCcEEEEec
Confidence            469999998774  876442 111  11122345679998875332111   124578999999875  8753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=92.62  E-value=4.2  Score=34.44  Aligned_cols=135  Identities=13%  Similarity=0.077  Sum_probs=70.8

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      ..++.+|+... .......+.      .-++++.. ++.+|+......     ...++++|+.+.+.+.+...+..+...
T Consensus        53 ~~I~~~d~~g~-~~~~~~~~~------~p~gia~~~dG~l~vad~~~~-----~~~v~~~d~~~g~~~~~~~~~~~~~~~  120 (306)
T 2p4o_A           53 GEIVSITPDGN-QQIHATVEG------KVSGLAFTSNGDLVATGWNAD-----SIPVVSLVKSDGTVETLLTLPDAIFLN  120 (306)
T ss_dssp             TEEEEECTTCC-EEEEEECSS------EEEEEEECTTSCEEEEEECTT-----SCEEEEEECTTSCEEEEEECTTCSCEE
T ss_pred             CeEEEECCCCc-eEEEEeCCC------CceeEEEcCCCcEEEEeccCC-----cceEEEEcCCCCeEEEEEeCCCccccC
Confidence            36888998764 322222221      11234333 567888753210     125888999888887665444434333


Q ss_pred             eeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCc---eEecCC----Cc-cCcCce-eEEEECCEEEEEeCcccCCCCc
Q 018336          181 AAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDE---WTELAR----MT-QERDEC-EAVVIGSEFWVVSGYKTERQGI  250 (358)
Q Consensus       181 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~----~p-~~~~~~-~~~~~~~~lyv~gG~~~~~~~~  250 (358)
                      +.+. .++.+|+.-.      ....++++|+.++.   |..-+.    .+ ...... .+..-++.||+.--.       
T Consensus       121 g~~~~~~~~~~v~d~------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~-------  187 (306)
T 2p4o_A          121 GITPLSDTQYLTADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE-------  187 (306)
T ss_dssp             EEEESSSSEEEEEET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT-------
T ss_pred             cccccCCCcEEEEEC------CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCC-------
Confidence            3333 3566777631      13579999987642   221111    11 111112 232334578887532       


Q ss_pred             eeeeeEEEECCC
Q 018336          251 FDESAESYQLGT  262 (358)
Q Consensus       251 ~~~~i~~yd~~~  262 (358)
                       ...|.+||+..
T Consensus       188 -~~~I~~~~~~~  198 (306)
T 2p4o_A          188 -KMLLLRIPVDS  198 (306)
T ss_dssp             -TTEEEEEEBCT
T ss_pred             -CCEEEEEEeCC
Confidence             34688898875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=92.60  E-value=6.6  Score=36.58  Aligned_cols=92  Identities=11%  Similarity=-0.115  Sum_probs=48.3

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCCCCCcceeEEEEC--CCCcEEeCCCCCCCc
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPASYSPVSHVFVYDF--TTRRWTRGKNMPDNR  177 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~--~t~~W~~~~~~~~~~  177 (358)
                      ..+.++|..+++-...-....     . .+.++..  +..+|+.+.        -+.+.+||.  .+.+-  +..++...
T Consensus       159 ~~V~v~D~~t~~~~~~i~~g~-----~-~~~v~~spdg~~l~v~~~--------d~~V~v~D~~~~t~~~--~~~i~~g~  222 (543)
T 1nir_A          159 GQIALVDGDSKKIVKVIDTGY-----A-VHISRMSASGRYLLVIGR--------DARIDMIDLWAKEPTK--VAEIKIGI  222 (543)
T ss_dssp             TEEEEEETTTCCEEEEEECST-----T-EEEEEECTTSCEEEEEET--------TSEEEEEETTSSSCEE--EEEEECCS
T ss_pred             CeEEEEECCCceEEEEEecCc-----c-cceEEECCCCCEEEEECC--------CCeEEEEECcCCCCcE--EEEEecCC
Confidence            368889998886533222111     1 2233332  446777654        257999999  56543  22222222


Q ss_pred             eeeeeEE-E----CC-EEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          178 SFFAAGE-L----NG-RVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       178 ~~~~~~~-~----~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      .-..++. -    ++ .+|+.. +.     ...+.++|..+.+-
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~-~~-----~~~v~v~D~~t~~~  260 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGA-YW-----PPQFAIMDGETLEP  260 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEE-EE-----SSEEEEEETTTCCE
T ss_pred             CcceEEeCCCcCCCCCEEEEEE-cc-----CCeEEEEecccccc
Confidence            2233333 2    44 455543 21     24688889887654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=92.50  E-value=2.8  Score=40.31  Aligned_cols=118  Identities=13%  Similarity=0.121  Sum_probs=71.1

Q ss_pred             EEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCC--------ceeeeeEEECCEEEEEcCcCCCCCCC
Q 018336          133 VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDN--------RSFFAAGELNGRVIIAGGHDENKTAL  202 (358)
Q Consensus       133 ~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~--------~~~~~~~~~~~~iyv~GG~~~~~~~~  202 (358)
                      -++.++.||+...        ...++.+|..|.+  |+.-...+..        ....+.++.+++||+...       -
T Consensus        62 P~v~~g~vyv~~~--------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------d  126 (668)
T 1kv9_A           62 PLFHDGVIYTSMS--------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------D  126 (668)
T ss_dssp             CEEETTEEEEEEG--------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------T
T ss_pred             CEEECCEEEEECC--------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------C
Confidence            3467999999865        3478899987764  8764432211        012234567888888632       2


Q ss_pred             CeEEEEECCCCc--eEecCCCcc--CcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc--eEEc
Q 018336          203 SSAWAYDLIKDE--WTELARMTQ--ERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE--WKRA  268 (358)
Q Consensus       203 ~~~~~yd~~t~~--W~~~~~~p~--~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~~  268 (358)
                      ..++++|.+|++  |+.-..-+.  .......++.++++|+-.+....   .....+.+||..+++  |+.-
T Consensus       127 g~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~---~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          127 GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY---GVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT---CCBCEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCc---CCCCEEEEEECCCCcEEEEec
Confidence            469999998774  886432111  11122345678888875332111   124578999998875  8753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=92.45  E-value=4.8  Score=34.59  Aligned_cols=93  Identities=13%  Similarity=0.213  Sum_probs=48.4

Q ss_pred             ceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE
Q 018336          155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI  233 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~  233 (358)
                      ..+.+||..+.+-...-.-... .-.+++. -++.+++.|+.+.      .+.+||..++.-...  +.........+.+
T Consensus       164 ~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~~~~~~--~~~h~~~v~~v~~  234 (340)
T 1got_B          164 TTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACDA------SAKLWDVREGMCRQT--FTGHESDINAICF  234 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTS------CEEEEETTTCSEEEE--ECCCSSCEEEEEE
T ss_pred             CcEEEEECCCCcEEEEEcCCCC-ceEEEEECCCCCEEEEEeCCC------cEEEEECCCCeeEEE--EcCCcCCEEEEEE
Confidence            3688999988764321110011 1112222 2566777776543      488999987643221  1111111122222


Q ss_pred             --CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          234 --GSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       234 --~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                        ++++++.|+.+        ..+..||..+++
T Consensus       235 ~p~~~~l~s~s~d--------~~v~iwd~~~~~  259 (340)
T 1got_B          235 FPNGNAFATGSDD--------ATCRLFDLRADQ  259 (340)
T ss_dssp             CTTSSEEEEEETT--------SCEEEEETTTTE
T ss_pred             cCCCCEEEEEcCC--------CcEEEEECCCCc
Confidence              56777777653        356789988764

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=92.40  E-value=3.6  Score=37.46  Aligned_cols=57  Identities=14%  Similarity=0.205  Sum_probs=37.1

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeC--CCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRG--KNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                      ++.+|++.|         +..|.||..+++....  +.+|  . --++....+.+|++-|        +..+.||..+.
T Consensus       158 ~~~~yfFkG---------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG--------~~y~rfd~~~~  216 (460)
T 1qhu_A          158 DEGILFFQG---------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG--------NQFLRFNPVSG  216 (460)
T ss_dssp             SSEEEEEET---------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET--------TEEEEECTTTC
T ss_pred             CCeEEEEec---------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC--------CEEEEEcCccC
Confidence            678888877         3689999988765432  2233  2 2233345789999966        34677776554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=92.33  E-value=7.7  Score=36.71  Aligned_cols=122  Identities=12%  Similarity=0.153  Sum_probs=70.7

Q ss_pred             EEEEECCEEEEEcCcCCCCCCCcceeEEEEC-CCCc--EEeCCCCCCC--------ceeeeeEE--ECCE----EEEEcC
Q 018336          132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDF-TTRR--WTRGKNMPDN--------RSFFAAGE--LNGR----VIIAGG  194 (358)
Q Consensus       132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~-~t~~--W~~~~~~~~~--------~~~~~~~~--~~~~----iyv~GG  194 (358)
                      .-++.++.||+....       ...++.+|. .|.+  |+.-...+..        ....+.++  .++.    ||+...
T Consensus        57 tP~v~~g~vyv~~~~-------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~  129 (599)
T 1w6s_A           57 APLVVDGKMYIHTSF-------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL  129 (599)
T ss_dssp             CCEEETTEEEEECST-------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT
T ss_pred             ccEEECCEEEEEeCC-------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC
Confidence            345569999998652       236899998 7764  8765433211        11123444  5666    877632


Q ss_pred             cCCCCCCCCeEEEEECCCCc--eEecC-CCccC-cCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc--eEEc
Q 018336          195 HDENKTALSSAWAYDLIKDE--WTELA-RMTQE-RDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE--WKRA  268 (358)
Q Consensus       195 ~~~~~~~~~~~~~yd~~t~~--W~~~~-~~p~~-~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~~  268 (358)
                             -..++++|.++++  |+.-. ..... ......++.++++|+-.+....   .....+..||..+++  |+.-
T Consensus       130 -------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~---g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          130 -------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL---GVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             -------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGG---TCCCEEEEEETTTCCEEEEEE
T ss_pred             -------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEeccccc---CCCCeEEEEECCCCcEEEEEc
Confidence                   2469999998774  87532 21111 1122335678988875432110   114578999999875  8765


Q ss_pred             CC
Q 018336          269 EN  270 (358)
Q Consensus       269 ~~  270 (358)
                      ..
T Consensus       200 ~~  201 (599)
T 1w6s_A          200 AT  201 (599)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=92.27  E-value=4.2  Score=34.36  Aligned_cols=102  Identities=13%  Similarity=0.011  Sum_probs=48.9

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCC--CCCCceeEEEEE--CCEEEEEcCcC---CCCCC-CcceeEEEECCCCcEEeCCCC
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYP--AGLPLFCQVASS--QGKLVVMGGWD---PASYS-PVSHVFVYDFTTRRWTRGKNM  173 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~--~~~~~~~~~~~~--~~~lyv~Gg~~---~~~~~-~~~~~~~yd~~t~~W~~~~~~  173 (358)
                      ..+..+|..+++-...-..+.+.  .....  .++..  +..+|+.....   ..... ....+++||..+.+....-..
T Consensus        56 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  133 (337)
T 1pby_B           56 ESLVKIDLVTGETLGRIDLSTPEERVKSLF--GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA  133 (337)
T ss_dssp             TEEEEEETTTCCEEEEEECCBTTEEEECTT--CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred             CeEEEEECCCCCeEeeEEcCCccccccccc--ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence            36889999887754322221100  00011  22222  34677764210   00000 135899999988765432111


Q ss_pred             CCCceeeeeEE-ECC-EEEEEcCcCCCCCCCCeEEEEECCCCceE
Q 018336          174 PDNRSFFAAGE-LNG-RVIIAGGHDENKTALSSAWAYDLIKDEWT  216 (358)
Q Consensus       174 ~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  216 (358)
                      +.  .....+. -++ .+|+..         ..+.+||+.+++-.
T Consensus       134 ~~--~~~~~~~s~dg~~l~~~~---------~~i~~~d~~~~~~~  167 (337)
T 1pby_B          134 PR--QITMLAWARDGSKLYGLG---------RDLHVMDPEAGTLV  167 (337)
T ss_dssp             CS--SCCCEEECTTSSCEEEES---------SSEEEEETTTTEEE
T ss_pred             CC--CcceeEECCCCCEEEEeC---------CeEEEEECCCCcEe
Confidence            11  1122222 234 466662         35899999887644

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=92.21  E-value=0.65  Score=45.41  Aligned_cols=106  Identities=8%  Similarity=0.137  Sum_probs=61.8

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE--C--CEEEEEcCcCCCCCCCCeEEEEECCC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL--N--GRVIIAGGHDENKTALSSAWAYDLIK  212 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~t  212 (358)
                      ++..++.|+.+       ..+.+||..+.++..+..+......-.....  +  +..++.|+.+.      .+.+||..+
T Consensus        20 dg~~latg~~d-------g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~~~   86 (753)
T 3jro_A           20 YGKRLATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEEN   86 (753)
T ss_dssp             SSCCEEEEETT-------TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEEET
T ss_pred             CCCeEEEEECC-------CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEECCC
Confidence            45555566532       3688888887777665444332222222222  2  56677776543      499999999


Q ss_pred             CceEecCCCccCcCceeEEEE--C--CEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          213 DEWTELARMTQERDECEAVVI--G--SEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       213 ~~W~~~~~~p~~~~~~~~~~~--~--~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      +.|..+..+.........+.+  +  +.++++|+.+        ..+..||..++
T Consensus        87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d--------g~I~vwdl~~~  133 (753)
T 3jro_A           87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD--------GKVSVVEFKEN  133 (753)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT--------SEEEEEECCSS
T ss_pred             CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC--------CcEEEEEeecC
Confidence            888766544433333333333  2  6677777653        35778888765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=92.14  E-value=3.9  Score=39.30  Aligned_cols=120  Identities=14%  Similarity=0.159  Sum_probs=69.9

Q ss_pred             eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceEecCCCccC--------cCceeEEEECCEEEEEeCcccCCCCc
Q 018336          181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKD--EWTELARMTQE--------RDECEAVVIGSEFWVVSGYKTERQGI  250 (358)
Q Consensus       181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~--------~~~~~~~~~~~~lyv~gG~~~~~~~~  250 (358)
                      +.++.++.+|+...       ...++++|..++  .|+.-...+..        ......++.+++||+...        
T Consensus        61 ~P~v~~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------  125 (668)
T 1kv9_A           61 TPLFHDGVIYTSMS-------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--------  125 (668)
T ss_dssp             CCEEETTEEEEEEG-------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT--------
T ss_pred             CCEEECCEEEEECC-------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC--------
Confidence            34567999999853       246999998776  48865433211        011234567888888642        


Q ss_pred             eeeeeEEEECCCCc--eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCC-CCCceE
Q 018336          251 FDESAESYQLGTGE--WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQ-GGPQEF  327 (358)
Q Consensus       251 ~~~~i~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~-~~~~~i  327 (358)
                       ...++++|..+++  |+.-..-+...  .                      ....+.+..+++||+-.+... +....+
T Consensus       126 -dg~l~alD~~tG~~~W~~~~~~~~~~--~----------------------~~~~~P~v~~~~v~vg~~~~~~~~~g~v  180 (668)
T 1kv9_A          126 -DGRLIALDAKTGKAIWSQQTTDPAKP--Y----------------------SITGAPRVVKGKVIIGNGGAEYGVRGFV  180 (668)
T ss_dssp             -TSEEEEEETTTCCEEEEEECSCTTSS--C----------------------BCCSCCEEETTEEEECCBCTTTCCBCEE
T ss_pred             -CCEEEEEECCCCCEeeeeccCCCCCc--c----------------------eecCCCEEECCEEEEeCCCCCcCCCCEE
Confidence             2367899998875  87643211000  0                      000112456888877533211 112579


Q ss_pred             EEEECCCCc--eEee
Q 018336          328 YVVEGRNGK--FRKF  340 (358)
Q Consensus       328 ~~yd~~~~~--W~~~  340 (358)
                      +.||..+++  |+.-
T Consensus       181 ~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          181 SAYDADTGKLAWRFY  195 (668)
T ss_dssp             EEEETTTCCEEEEEE
T ss_pred             EEEECCCCcEEEEec
Confidence            999998776  8764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=92.14  E-value=0.11  Score=45.98  Aligned_cols=107  Identities=10%  Similarity=0.024  Sum_probs=44.0

Q ss_pred             EEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336          134 ASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLI  211 (358)
Q Consensus       134 ~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~  211 (358)
                      ++.++.||+.+.        ...++.+|..+.+  |+.-.  . + .....+..++.+|+.++.+      ..++++|.+
T Consensus         6 ~v~~~~v~~gs~--------dg~v~a~d~~tG~~~W~~~~--~-~-~~s~p~~~~g~~~v~~s~d------g~l~a~d~~   67 (369)
T 2hz6_A            6 TLPETLLFVSTL--------DGSLHAVSKRTGSIKWTLKE--D-P-VLQVPTHVEEPAFLPDPND------GSLYTLGSK   67 (369)
T ss_dssp             --CTTEEEEEET--------TSEEEEEETTTCCEEEEEEC--C-C-SCCCC-----CCEEECTTT------CCEEEC---
T ss_pred             eeeCCEEEEEcC--------CCEEEEEECCCCCEEEEecC--C-C-ceecceEcCCCEEEEeCCC------CEEEEEECC
Confidence            445677777653        2368899988764  65432  1 1 1122233466678776433      358999986


Q ss_pred             CC--ceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc--eEE
Q 018336          212 KD--EWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE--WKR  267 (358)
Q Consensus       212 t~--~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~  267 (358)
                      ++  .|+.-...+.......++..++.+|+ |+.        ...+.++|+.+++  |+.
T Consensus        68 tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~-g~~--------dg~v~a~D~~tG~~~w~~  118 (369)
T 2hz6_A           68 NNEGLTKLPFTIPELVQASPCRSSDGILYM-GKK--------QDIWYVIDLLTGEKQQTL  118 (369)
T ss_dssp             --CCSEECSCCHHHHHTTCSCC-----CCC-CEE--------EEEEEEECCC--------
T ss_pred             CCceeeeeeccCccccccCceEecCCEEEE-EeC--------CCEEEEEECCCCcEEEEe
Confidence            54  56632222211111111124555554 221        3468899998764  653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=92.13  E-value=4.6  Score=33.67  Aligned_cols=147  Identities=10%  Similarity=0.064  Sum_probs=70.9

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceE
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWT  216 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  216 (358)
                      ++..++.|+.+       ..+.+||.... -..+..............-++. ++.|+.+      ..+.+||..+.+-.
T Consensus       154 ~~~~l~~~~~d-------~~i~i~d~~~~-~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d------g~i~i~d~~~~~~~  218 (313)
T 3odt_A          154 SENKFLTASAD-------KTIKLWQNDKV-IKTFSGIHNDVVRHLAVVDDGH-FISCSND------GLIKLVDMHTGDVL  218 (313)
T ss_dssp             TTTEEEEEETT-------SCEEEEETTEE-EEEECSSCSSCEEEEEEEETTE-EEEEETT------SEEEEEETTTCCEE
T ss_pred             CCCEEEEEECC-------CCEEEEecCce-EEEEeccCcccEEEEEEcCCCe-EEEccCC------CeEEEEECCchhhh
Confidence            55566666543       36888883321 1222221112222222234666 5555533      35999999876432


Q ss_pred             ecCCCccCcCce-eEEEE-CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCcee
Q 018336          217 ELARMTQERDEC-EAVVI-GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWA  294 (358)
Q Consensus       217 ~~~~~p~~~~~~-~~~~~-~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~  294 (358)
                      ..  +....... .++.. +++ ++.|+.        -..+..||..+++-...-..+.    . .              
T Consensus       219 ~~--~~~~~~~i~~~~~~~~~~-l~~~~~--------dg~v~iwd~~~~~~~~~~~~~~----~-~--------------  268 (313)
T 3odt_A          219 RT--YEGHESFVYCIKLLPNGD-IVSCGE--------DRTVRIWSKENGSLKQVITLPA----I-S--------------  268 (313)
T ss_dssp             EE--EECCSSCEEEEEECTTSC-EEEEET--------TSEEEEECTTTCCEEEEEECSS----S-C--------------
T ss_pred             hh--hhcCCceEEEEEEecCCC-EEEEec--------CCEEEEEECCCCceeEEEeccC----c-e--------------
Confidence            21  11111111 22222 443 444443        2357889988876433222110    0 0              


Q ss_pred             ccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336          295 ETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       295 ~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                             ........+++ ++.|+.+    ..|.+||..++++...
T Consensus       269 -------i~~~~~~~~~~-~~~~~~d----g~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          269 -------IWSVDCMSNGD-IIVGSSD----NLVRIFSQEKSRWASE  302 (313)
T ss_dssp             -------EEEEEECTTSC-EEEEETT----SCEEEEESCGGGCCC-
T ss_pred             -------EEEEEEccCCC-EEEEeCC----CcEEEEeCCCCceeeh
Confidence                   01112334566 4556554    5899999999887665

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=91.97  E-value=3.2  Score=35.31  Aligned_cols=35  Identities=14%  Similarity=0.209  Sum_probs=22.6

Q ss_pred             EEeCCeEEEECCCCCCCCceEEEEECC-CCceEee-cCCCC
Q 018336          307 VELGGCTLVTGSGYQGGPQEFYVVEGR-NGKFRKF-DVPAE  345 (358)
Q Consensus       307 ~~~~~~i~v~gG~~~~~~~~i~~yd~~-~~~W~~~-~~p~~  345 (358)
                      ...++++++.||.+    ..|.+|+.. .+.|..+ .+...
T Consensus       270 ~sp~g~~las~~~D----~~v~lw~~~~~g~~~~~~~~~~~  306 (316)
T 3bg1_A          270 WSITANILAVSGGD----NKVTLWKESVDGQWVCISDVNKG  306 (316)
T ss_dssp             ECTTTCCEEEEESS----SCEEEEEECTTSCEEEEEECC--
T ss_pred             EcCCCCEEEEEcCC----CeEEEEEECCCCcEEEeeeccCC
Confidence            33457777777764    567777765 5679988 55543

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=91.93  E-value=3.9  Score=32.41  Aligned_cols=152  Identities=8%  Similarity=0.050  Sum_probs=82.1

Q ss_pred             eEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCC--cEE--eC----CCCCCCceeeeeEE---ECCEEEEEcCcCCCC
Q 018336          131 CQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTR--RWT--RG----KNMPDNRSFFAAGE---LNGRVIIAGGHDENK  199 (358)
Q Consensus       131 ~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~--~W~--~~----~~~~~~~~~~~~~~---~~~~iyv~GG~~~~~  199 (358)
                      -+++..++.+|++-|         +.+|+++....  ...  .+    +.+|..   ..+|.   .++++|++-|     
T Consensus        10 DAi~~~~g~~yfFkg---------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~---IDAa~~~~~~~~~yfFkG-----   72 (195)
T 1itv_A           10 DAIAEIGNQLYLFKD---------GKYWRFSEGRGSRPQGPFLIADKWPALPRK---LDSVFEEPLSKKLFFFSG-----   72 (195)
T ss_dssp             SEEEEETTEEEEEET---------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS---CSEEEECTTTCCEEEEET-----
T ss_pred             CEEEEeCCEEEEEEC---------CEEEEEECCccccCCCcEEhhhccCCCCCC---ccEEEEECCCCeEEEEeC-----
Confidence            366778999999976         36888877552  221  11    334432   22232   2678999865     


Q ss_pred             CCCCeEEEEECCCCc-eEecC--CCccCcCceeEE--EECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCcccc
Q 018336          200 TALSSAWAYDLIKDE-WTELA--RMTQERDECEAV--VIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKL  274 (358)
Q Consensus       200 ~~~~~~~~yd~~t~~-W~~~~--~~p~~~~~~~~~--~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~  274 (358)
                         +..++|+..+.. =+.+.  .+|.......++  ..++++|++-|.          ..+.||..+++-.  ..-|  
T Consensus        73 ---~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~----------~ywr~d~~~~~~~--~gyP--  135 (195)
T 1itv_A           73 ---RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR----------RLWRFDVKAQMVD--PRSA--  135 (195)
T ss_dssp             ---TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT----------EEEEEETTTTEEC--GGGC--
T ss_pred             ---CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC----------EEEEEeCCccccc--CCCc--
Confidence               346777654211 11121  223211122233  236889999764          3478988765321  1111  


Q ss_pred             CCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCce
Q 018336          275 SQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKF  337 (358)
Q Consensus       275 ~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W  337 (358)
                          +.        -.+.|..+|..+   -++...++.+|++-|      +..|+||..+.+=
T Consensus       136 ----r~--------i~~~w~Gvp~~i---daa~~~~g~~Yffkg------~~y~~~~~~~~~v  177 (195)
T 1itv_A          136 ----SE--------VDRMFPGVPLDT---HDVFQFREKAYFCQD------RFYWRVSSRSELN  177 (195)
T ss_dssp             ----EE--------HHHHSTTSCSSC---SEEEEETTEEEEEET------TEEEEEECCTTCC
T ss_pred             ----cC--------hhhcCCCCCCCC---CEEEEeCCeEEEEeC------CEEEEEECCccEE
Confidence                10        011343344321   123445799999988      4899999887753

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=91.91  E-value=2.1  Score=36.86  Aligned_cols=103  Identities=9%  Similarity=0.019  Sum_probs=53.7

Q ss_pred             eeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCc-CceeEE-E
Q 018336          156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQER-DECEAV-V  232 (358)
Q Consensus       156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~-~~~~~~-~  232 (358)
                      .+|.+|..++++..+........-..++. -++++|+.+....    ...+.+|++.++.++.+....... ....++ .
T Consensus        19 ~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~----~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s   94 (347)
T 3hfq_A           19 YQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDD----EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD   94 (347)
T ss_dssp             EEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETT----EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred             EEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCC----CceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence            57777888888766432111111112222 3677887753211    246999999888877665432211 112233 3


Q ss_pred             ECCE-EEEEeCcccCCCCceeeeeEEEECC-CCceEEcCC
Q 018336          233 IGSE-FWVVSGYKTERQGIFDESAESYQLG-TGEWKRAEN  270 (358)
Q Consensus       233 ~~~~-lyv~gG~~~~~~~~~~~~i~~yd~~-~~~W~~~~~  270 (358)
                      -+|+ ||+.+..        ...+.+||.. +++...+..
T Consensus        95 pdg~~l~~~~~~--------~~~v~v~~~~~~g~~~~~~~  126 (347)
T 3hfq_A           95 EARQLVYSANYH--------KGTAEVMKIAADGALTLTDT  126 (347)
T ss_dssp             TTTTEEEEEETT--------TTEEEEEEECTTSCEEEEEE
T ss_pred             CCCCEEEEEeCC--------CCEEEEEEeCCCCCeeecce
Confidence            3555 6665422        2356778774 445544443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=91.87  E-value=8.7  Score=36.34  Aligned_cols=108  Identities=18%  Similarity=0.147  Sum_probs=58.2

Q ss_pred             eEEEEeC-CCCC--eeecCCCCCCCC----CCCceeEEEE--ECCE----EEEEcCcCCCCCCCcceeEEEECCCCc--E
Q 018336          103 GVTVFDP-VSLT--WDRLGPVPEYPA----GLPLFCQVAS--SQGK----LVVMGGWDPASYSPVSHVFVYDFTTRR--W  167 (358)
Q Consensus       103 ~~~~~d~-~~~~--W~~~~~~~~~~~----~~~~~~~~~~--~~~~----lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W  167 (358)
                      .++++|. .+++  |+.-...+....    ........+.  .++.    ||+...        ...++.+|..|.+  |
T Consensus        74 ~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~--------dg~l~AlDa~TG~~~W  145 (599)
T 1w6s_A           74 NTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL--------DGNVAALNAETGETVW  145 (599)
T ss_dssp             CEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT--------TSEEEEEETTTCCEEE
T ss_pred             EEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC--------CCEEEEEECCCCCEEE
Confidence            6889999 7775  876544321000    0000112344  4666    887643        2378999998875  7


Q ss_pred             EeC-CCCCCC-ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc--eEecC
Q 018336          168 TRG-KNMPDN-RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE--WTELA  219 (358)
Q Consensus       168 ~~~-~~~~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~  219 (358)
                      +.- ...... ....+.++.++.+|+..+..+. .....+..||.+|++  |+.-.
T Consensus       146 ~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~-g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          146 KVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL-GVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EEECCCGGGTCBCCSCCEEETTEEEECCBCGGG-TCCCEEEEEETTTCCEEEEEES
T ss_pred             eecCCCCCccceeecCCEEECCEEEEEeccccc-CCCCeEEEEECCCCcEEEEEcC
Confidence            653 221100 1112334568888764422111 123579999998765  87543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=91.83  E-value=2.7  Score=35.95  Aligned_cols=191  Identities=12%  Similarity=-0.026  Sum_probs=92.2

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCC----------CCCcceeEEEECCCCcEEeC
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPAS----------YSPVSHVFVYDFTTRRWTRG  170 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~----------~~~~~~~~~yd~~t~~W~~~  170 (358)
                      .+..||+.++....+........ ......++..  ++.||+........          ......+++||+.+.+.+.+
T Consensus       102 ~i~~~d~~~g~~~~~~~~~~~~~-~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  180 (322)
T 2fp8_A          102 HLSVVGSEGGHATQLATSVDGVP-FKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL  180 (322)
T ss_dssp             EEEEECTTCEECEEEESEETTEE-CSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred             CEEEEeCCCCEEEEecccCCCCc-ccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence            47788888765544432111000 0112233333  57899875321000          01235799999988776543


Q ss_pred             C-CCCCCceeeeeEEE-C-CEEEEEcCcCCCCCCCCeEEEEECCCC---ceEecCCCccCcCceeEEEE--CCEEEEEeC
Q 018336          171 K-NMPDNRSFFAAGEL-N-GRVIIAGGHDENKTALSSAWAYDLIKD---EWTELARMTQERDECEAVVI--GSEFWVVSG  242 (358)
Q Consensus       171 ~-~~~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG  242 (358)
                      . .+..+   .+.+.- + +.+|+.-..      ...+.+|++...   ..+.+..++.    ...+.+  +|+|||...
T Consensus       181 ~~~~~~p---~gia~~~dg~~lyv~d~~------~~~I~~~~~~~~~~~~~~~~~~~~g----P~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          181 LKELHVP---GGAEVSADSSFVLVAEFL------SHQIVKYWLEGPKKGTAEVLVKIPN----PGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             EEEESCC---CEEEECTTSSEEEEEEGG------GTEEEEEESSSTTTTCEEEEEECSS----EEEEEECTTSCEEEEEE
T ss_pred             ccCCccC---cceEECCCCCEEEEEeCC------CCeEEEEECCCCcCCccceEEeCCC----CCCeEECCCCCEEEEec
Confidence            2 11111   122332 3 358887321      257999998752   3443333322    223333  467888864


Q ss_pred             cccCCC--CceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCC
Q 018336          243 YKTERQ--GIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGY  320 (358)
Q Consensus       243 ~~~~~~--~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~  320 (358)
                      ......  ......+.+||+....-..+.. |... ..                      ....+++..+++|||.....
T Consensus       248 ~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~-~~g~-~~----------------------~~~~~~~~~~g~L~v~~~~~  303 (322)
T 2fp8_A          248 EELDGNMHGRVDPKGIKFDEFGNILEVIPL-PPPF-AG----------------------EHFEQIQEHDGLLYIGTLFH  303 (322)
T ss_dssp             EETTSSTTSCEEEEEEEECTTSCEEEEEEC-CTTT-TT----------------------SCCCEEEEETTEEEEECSSC
T ss_pred             CcccccccCCCccEEEEECCCCCEEEEEEC-CCCC-cc----------------------ccceEEEEeCCEEEEeecCC
Confidence            310000  0013468889986443333332 1100 00                      11122345689999986543


Q ss_pred             CCCCceEEEEECCCC
Q 018336          321 QGGPQEFYVVEGRNG  335 (358)
Q Consensus       321 ~~~~~~i~~yd~~~~  335 (358)
                          +.|.+|++..+
T Consensus       304 ----~~i~~~~~~~~  314 (322)
T 2fp8_A          304 ----GSVGILVYDKK  314 (322)
T ss_dssp             ----SEEEEEEC---
T ss_pred             ----CceEEEecccc
Confidence                68889987644

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=91.79  E-value=6.1  Score=38.12  Aligned_cols=121  Identities=17%  Similarity=0.209  Sum_probs=70.2

Q ss_pred             eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceEecCCCccC--------cCceeEEEECCEEEEEeCcccCCCCc
Q 018336          181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKD--EWTELARMTQE--------RDECEAVVIGSEFWVVSGYKTERQGI  250 (358)
Q Consensus       181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~--------~~~~~~~~~~~~lyv~gG~~~~~~~~  250 (358)
                      +.++.++.+|+...       ...++++|..++  .|+.-...+..        ....+.++.+++||+...        
T Consensus        65 ~P~v~~g~vyv~~~-------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~--------  129 (689)
T 1yiq_A           65 TPIVVDGVMYTTGP-------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL--------  129 (689)
T ss_dssp             CCEEETTEEEEECG-------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT--------
T ss_pred             cCEEECCEEEEEcC-------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc--------
Confidence            33567999999753       245999998776  49864433211        111234577888888652        


Q ss_pred             eeeeeEEEECCCCc--eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCC-CCCceE
Q 018336          251 FDESAESYQLGTGE--WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQ-GGPQEF  327 (358)
Q Consensus       251 ~~~~i~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~-~~~~~i  327 (358)
                       ...++++|..+++  |+.-....... ..                      ....+.+..++++|+-.+... +....+
T Consensus       130 -dg~l~AlDa~TG~~~W~~~~~~~~~~-~~----------------------~~~~sP~v~~g~v~vg~~~~~~~~~g~v  185 (689)
T 1yiq_A          130 -DGRLEAIDAKTGQRAWSVDTRADHKR-SY----------------------TITGAPRVVNGKVVIGNGGAEFGVRGYV  185 (689)
T ss_dssp             -TSEEEEEETTTCCEEEEEECCSCTTS-CC----------------------BCCSCCEEETTEEEECCBCTTTCCBCEE
T ss_pred             -CCEEEEEECCCCCEeeeecCcCCCCC-Cc----------------------cccCCcEEECCEEEEEeCCCccCCCCEE
Confidence             2357899998875  87644210000 00                      000112456888877433211 112589


Q ss_pred             EEEECCCCc--eEee
Q 018336          328 YVVEGRNGK--FRKF  340 (358)
Q Consensus       328 ~~yd~~~~~--W~~~  340 (358)
                      +.||..+++  |+.-
T Consensus       186 ~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          186 TAYDAETGKEAWRFY  200 (689)
T ss_dssp             EEEETTTCCEEEEEE
T ss_pred             EEEECCCCcEEEEec
Confidence            999999877  8754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.59  E-value=4.6  Score=39.35  Aligned_cols=134  Identities=12%  Similarity=0.161  Sum_probs=65.1

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~  181 (358)
                      .+..||..+++....-.....    ........-++..++.|+.+       ..+.+||..+++... +......  -.+
T Consensus        36 ~v~iwd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~~~~~--v~~  102 (814)
T 3mkq_A           36 RVEIWNYETQVEVRSIQVTET----PVRAGKFIARKNWIIVGSDD-------FRIRVFNYNTGEKVVDFEAHPDY--IRS  102 (814)
T ss_dssp             EEEEEETTTTEEEEEEECCSS----CEEEEEEEGGGTEEEEEETT-------SEEEEEETTTCCEEEEEECCSSC--EEE
T ss_pred             EEEEEECCCCceEEEEecCCC----cEEEEEEeCCCCEEEEEeCC-------CeEEEEECCCCcEEEEEecCCCC--EEE
Confidence            678899887654332111110    11212223355566666532       378999998876543 2211111  111


Q ss_pred             eEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCce-eEEEE--CCEEEEEeCcccCCCCceeeeeEE
Q 018336          182 AGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDEC-EAVVI--GSEFWVVSGYKTERQGIFDESAES  257 (358)
Q Consensus       182 ~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~-~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~  257 (358)
                      ++. -++..++.|+.+      ..+.+||..++ |.....+....... .++..  ++.++++|+.+        ..+..
T Consensus       103 ~~~s~~~~~l~~~~~d------g~i~vw~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~v~v  167 (814)
T 3mkq_A          103 IAVHPTKPYVLSGSDD------LTVKLWNWENN-WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD--------RTVKV  167 (814)
T ss_dssp             EEECSSSSEEEEEETT------SEEEEEEGGGT-SEEEEEEECCSSCEEEEEEETTEEEEEEEEETT--------SEEEE
T ss_pred             EEEeCCCCEEEEEcCC------CEEEEEECCCC-ceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC--------CeEEE
Confidence            222 245455555433      35889998765 22222111111112 22233  45677776543        35778


Q ss_pred             EECCCCc
Q 018336          258 YQLGTGE  264 (358)
Q Consensus       258 yd~~~~~  264 (358)
                      ||..+.+
T Consensus       168 wd~~~~~  174 (814)
T 3mkq_A          168 WSLGQST  174 (814)
T ss_dssp             EETTCSS
T ss_pred             EECCCCc
Confidence            8886543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=91.50  E-value=4.8  Score=38.21  Aligned_cols=158  Identities=8%  Similarity=-0.005  Sum_probs=80.9

Q ss_pred             cceeEEEECCC------CcEEeCC-CCCCCceeeeeEE-ECCE-EEEEcCcCCCCC-CCCeEEEEECC-CCceEecCCCc
Q 018336          154 VSHVFVYDFTT------RRWTRGK-NMPDNRSFFAAGE-LNGR-VIIAGGHDENKT-ALSSAWAYDLI-KDEWTELARMT  222 (358)
Q Consensus       154 ~~~~~~yd~~t------~~W~~~~-~~~~~~~~~~~~~-~~~~-iyv~GG~~~~~~-~~~~~~~yd~~-t~~W~~~~~~p  222 (358)
                      ...++++|..+      ...+.+. .-.  ......+. -+++ |++......... ....++++|.. ++.+.....+.
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAVRELSDDAH--RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGSEESSCSCS--SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             eeEEEEEECCCCccccCCceeEEEecCC--CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence            36899999988      6666554 211  11111222 2454 544432211110 13579999998 56433322222


Q ss_pred             cC-cCc-eeEE-EECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccc
Q 018336          223 QE-RDE-CEAV-VIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAA  299 (358)
Q Consensus       223 ~~-~~~-~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~  299 (358)
                      .. ... .... .-||++|+.+...+      ...++.+|+.++++..+.........             ..|..-   
T Consensus       238 ~~~~~~~~~~~~spdg~l~~~~~~~~------~~~l~~~~~~~~~~~~l~~~~~~~~~-------------p~w~~~---  295 (662)
T 3azo_A          238 GGPEEAIAQAEWAPDGSLIVATDRTG------WWNLHRVDPATGAATQLCRREEEFAG-------------PLWTPG---  295 (662)
T ss_dssp             EETTBCEEEEEECTTSCEEEEECTTS------SCEEEEECTTTCCEEESSCCSSBSSC-------------CCCSTT---
T ss_pred             CCCCceEcceEECCCCeEEEEECCCC------CeEEEEEECCCCceeecccccccccC-------------cccccc---
Confidence            11 111 1222 23788877765431      23688999988889877653211100             011000   


Q ss_pred             eeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336          300 VQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       300 ~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                        .......-++++++.+..   +...+|.+|..+++.+.+
T Consensus       296 --~~~~~~~~~~~~~~~~~~---~~~~l~~~d~~~~~~~~l  331 (662)
T 3azo_A          296 --MRWFAPLANGLIAVVHGK---GAAVLGILDPESGELVDA  331 (662)
T ss_dssp             --CCSEEECTTSCEEEEEBS---SSCEEEEEETTTTEEEEC
T ss_pred             --CceEeEeCCCEEEEEEEc---CccEEEEEECCCCcEEEe
Confidence              000112236777776654   226889999988877776

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=91.30  E-value=7  Score=34.14  Aligned_cols=105  Identities=7%  Similarity=0.085  Sum_probs=50.4

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCc--------------eeeeeEEECCEEEEEcCcCCCCCCC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNR--------------SFFAAGELNGRVIIAGGHDENKTAL  202 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~--------------~~~~~~~~~~~iyv~GG~~~~~~~~  202 (358)
                      ++..++.++.+       ..+.+||..+.+....-......              ....++...+..+++|+.+      
T Consensus       160 ~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  226 (425)
T 1r5m_A          160 DGTHIISMDVE-------NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK------  226 (425)
T ss_dssp             TSSEEEEEETT-------CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG------
T ss_pred             CCCEEEEEecC-------CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC------
Confidence            45555555532       36889999877654321111111              0122222223345555543      


Q ss_pred             CeEEEEECCCCceEe-cCCCccCcCceeEE-EECCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          203 SSAWAYDLIKDEWTE-LARMTQERDECEAV-VIGSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       203 ~~~~~yd~~t~~W~~-~~~~p~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      ..+.+||..++.-.. +.....  .-..+. .-++++++.|+.+        ..+..||..+.+
T Consensus       227 g~i~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~  280 (425)
T 1r5m_A          227 GAIFVYQITEKTPTGKLIGHHG--PISVLEFNDTNKLLLSASDD--------GTLRIWHGGNGN  280 (425)
T ss_dssp             GCEEEEETTCSSCSEEECCCSS--CEEEEEEETTTTEEEEEETT--------SCEEEECSSSBS
T ss_pred             CeEEEEEcCCCceeeeeccCCC--ceEEEEECCCCCEEEEEcCC--------CEEEEEECCCCc
Confidence            359999998763221 111111  111222 2256666666542        356788887653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=91.29  E-value=2.1  Score=37.85  Aligned_cols=105  Identities=13%  Similarity=0.261  Sum_probs=55.3

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      ++..++.|+.+       ..+.+||..+.+-...-.- ....-.+++.. ++..++.|+.+      ..+.+||..++..
T Consensus       134 dg~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~~~~  199 (393)
T 1erj_A          134 DGKFLATGAED-------RLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRTGQC  199 (393)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEE
T ss_pred             CCCEEEEEcCC-------CeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecCC------CcEEEEECCCCee
Confidence            56666666643       3689999987754332110 11111122222 45555565543      3588999988764


Q ss_pred             EecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCce
Q 018336          216 TELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEW  265 (358)
Q Consensus       216 ~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W  265 (358)
                      ...-....  ....++..  ++++++.|+.+        ..+..||..++.-
T Consensus       200 ~~~~~~~~--~v~~~~~~~~~~~~l~~~s~d--------~~v~iwd~~~~~~  241 (393)
T 1erj_A          200 SLTLSIED--GVTTVAVSPGDGKYIAAGSLD--------RAVRVWDSETGFL  241 (393)
T ss_dssp             EEEEECSS--CEEEEEECSTTCCEEEEEETT--------SCEEEEETTTCCE
T ss_pred             EEEEEcCC--CcEEEEEECCCCCEEEEEcCC--------CcEEEEECCCCcE
Confidence            43221111  11122222  66777777653        3467899887753

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=91.26  E-value=6.4  Score=33.62  Aligned_cols=130  Identities=7%  Similarity=-0.028  Sum_probs=70.6

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCCCCCcceeEEEECCC----CcEEe-CC-CCC
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPASYSPVSHVFVYDFTT----RRWTR-GK-NMP  174 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~~t----~~W~~-~~-~~~  174 (358)
                      .+..+|+.+.....+.+...      ...+++..  ++.||+....       ...++++|+.+    ..... +. .+.
T Consensus        11 ~I~~i~~~~~~~~~~~~~~~------~p~g~~~d~~~~~ly~~D~~-------~~~I~~~~~~g~~~~~~~~~~~~~~~~   77 (316)
T 1ijq_A           11 EVRKMTLDRSEYTSLIPNLR------NVVALDTEVASNRIYWSDLS-------QRMICSTQLDRAHGVSSYDTVISRDIQ   77 (316)
T ss_dssp             SEEEEETTSCCCEEEECSCS------SEEEEEEETTTTEEEEEETT-------TTEEEEEEC--------CEEEECSSCS
T ss_pred             eEEEEECCCcceEehhcCCC------ceEEEEEEeCCCEEEEEECC-------CCcEEEEECCCCCCCcccEEEEeCCCC
Confidence            57788888877655432111      12244443  5789998652       35799999876    22222 21 122


Q ss_pred             CCceeeeeEE--ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecC--CCccCcCceeEEE--ECCEEEEEeCcccCCC
Q 018336          175 DNRSFFAAGE--LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA--RMTQERDECEAVV--IGSEFWVVSGYKTERQ  248 (358)
Q Consensus       175 ~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~~~~~~~~~--~~~~lyv~gG~~~~~~  248 (358)
                      .|   .+.++  .++.||+.-..      ...++++++....-+.+.  .+..+   ..+++  .++.||+.....    
T Consensus        78 ~p---~glavd~~~~~ly~~d~~------~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~~----  141 (316)
T 1ijq_A           78 AP---DGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT----  141 (316)
T ss_dssp             CC---CEEEEETTTTEEEEEETT------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECSS----
T ss_pred             Cc---CEEEEeecCCeEEEEECC------CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccCC----
Confidence            22   23444  47899998421      357889998765433332  22222   23333  367899886211    


Q ss_pred             CceeeeeEEEECCCCc
Q 018336          249 GIFDESAESYQLGTGE  264 (358)
Q Consensus       249 ~~~~~~i~~yd~~~~~  264 (358)
                         ...|++++++...
T Consensus       142 ---~~~I~~~~~dG~~  154 (316)
T 1ijq_A          142 ---PAKIKKGGLNGVD  154 (316)
T ss_dssp             ---SCEEEEEETTSCC
T ss_pred             ---CCeEEEEcCCCCC
Confidence               2468888887543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.24  E-value=2.2  Score=37.27  Aligned_cols=150  Identities=11%  Similarity=0.026  Sum_probs=78.5

Q ss_pred             cceeEEEECCCCcEEeCCCCCCCceeeeeEE-E-CCE-EEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCcee-
Q 018336          154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-L-NGR-VIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECE-  229 (358)
Q Consensus       154 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~-~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~-  229 (358)
                      ...++++|..+.+.+.+...+  ......+. - ++. |++... .........++.+|..+..++.+.. ..+..... 
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~~--~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~  242 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQDT--AWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTH  242 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEES--SCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEE
T ss_pred             cceEEEEECCCCcEEeeccCC--cccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCCCccccc
Confidence            357899999988876654211  11111222 2 343 544432 1111122579999998888777654 11111111 


Q ss_pred             EE-EECCE-EEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEE
Q 018336          230 AV-VIGSE-FWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRV  307 (358)
Q Consensus       230 ~~-~~~~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~  307 (358)
                      .. .-+|+ |++.. .....   ....++.+|+.+++...+...+..                            . ...
T Consensus       243 ~~~spdg~~l~~~~-~~~~~---~~~~l~~~d~~~g~~~~l~~~~~~----------------------------~-~~~  289 (396)
T 3c5m_A          243 EFWIPDGSAMAYVS-YFKGQ---TDRVIYKANPETLENEEVMVMPPC----------------------------S-HLM  289 (396)
T ss_dssp             EEECTTSSCEEEEE-EETTT---CCEEEEEECTTTCCEEEEEECCSE----------------------------E-EEE
T ss_pred             eEECCCCCEEEEEe-cCCCC---ccceEEEEECCCCCeEEeeeCCCC----------------------------C-CCc
Confidence            12 22565 44443 22111   123589999998877665543210                            0 123


Q ss_pred             Ee-CCeEEEECCCC------------CCCCceEEEEECCCCceEee
Q 018336          308 EL-GGCTLVTGSGY------------QGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       308 ~~-~~~i~v~gG~~------------~~~~~~i~~yd~~~~~W~~~  340 (358)
                      .. +++++++.+..            ......++++|+.+++.+.+
T Consensus       290 s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  335 (396)
T 3c5m_A          290 SNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL  335 (396)
T ss_dssp             ECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEE
T ss_pred             cCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEc
Confidence            34 67766664321            11226899999998877666

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=91.19  E-value=5.2  Score=38.67  Aligned_cols=148  Identities=11%  Similarity=-0.038  Sum_probs=79.6

Q ss_pred             ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCC--CCCCceeeeeEE--ECCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336          136 SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKN--MPDNRSFFAAGE--LNGRVIIAGGHDENKTALSSAWAYDLI  211 (358)
Q Consensus       136 ~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~--~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~  211 (358)
                      .++.||+.-..       ...++++++....-+.+..  +..|+   ++++  .++.||+.--.     ....++++++.
T Consensus       463 ~~g~LY~tD~~-------~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~-----~~~~I~~~~~d  527 (699)
T 1n7d_A          463 IHSNIYWTDSV-------LGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG-----TPAKIKKGGLN  527 (699)
T ss_dssp             SSSBCEECCTT-------TSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS-----SSCCEEBCCSS
T ss_pred             eCCcEEEEecc-------CCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC-----CCCeEEEEeCC
Confidence            46889987432       3478999988765554432  22222   2222  35778876411     12467777775


Q ss_pred             CCceEecCCCccCcCceeEEEE---CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecC
Q 018336          212 KDEWTELARMTQERDECEAVVI---GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREG  288 (358)
Q Consensus       212 t~~W~~~~~~p~~~~~~~~~~~---~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~  288 (358)
                      ...-+.+...  .......+++   +++||+.-..        ...|+++|+....-..+.......             
T Consensus       528 G~~~~~l~~~--~l~~PnGlavd~~~~~LY~aD~~--------~~~I~~~d~dG~~~~~~~~~~~~~-------------  584 (699)
T 1n7d_A          528 GVDIYSLVTE--NIQWPNGITLDLLSGRLYWVDSK--------LHSISSIDVNGGNRKTILEDEKRL-------------  584 (699)
T ss_dssp             SCCCCEESCS--SCSSCCCEEECTTTCCEEEEETT--------TTEEEEECSSSSCCEEECCCSSSC-------------
T ss_pred             CCCeeEEEeC--CCCCccEEEEeccCCEEEEEecC--------CCeEEEEccCCCceEEEEecCCcC-------------
Confidence            4333322211  1111223333   5789998643        346888988754333332211000             


Q ss_pred             ccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCce
Q 018336          289 KLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKF  337 (358)
Q Consensus       289 ~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W  337 (358)
                                  ....+++..++.||+.-...    ..|.++|+.+++-
T Consensus       585 ------------~~P~glavd~~~lywtd~~~----~~V~~~d~~~G~~  617 (699)
T 1n7d_A          585 ------------AHPFSLAVFEDKVFWTDIIN----EAIFSANRLTGSD  617 (699)
T ss_dssp             ------------SSCCCCEEETTEEEEECSTT----TCEEEEETTTEEE
T ss_pred             ------------CCceEeEEECCEEEEEeCCC----CeEEEEEccCCCc
Confidence                        01122455778999987433    5799999876553

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=91.14  E-value=7  Score=33.88  Aligned_cols=135  Identities=9%  Similarity=0.049  Sum_probs=65.1

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-C-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-Q-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      .+..||..+++-...-.....    . -.+++.. + +.+++.++.+       ..+.+||..+.+-.............
T Consensus       162 ~v~iwd~~~~~~~~~~~~h~~----~-v~~v~~s~~~~~~~~s~~~d-------g~v~~wd~~~~~~~~~~~~~~~~~~v  229 (357)
T 4g56_B          162 SVKVWDLSQKAVLKSYNAHSS----E-VNCVAACPGKDTIFLSCGED-------GRILLWDTRKPKPATRIDFCASDTIP  229 (357)
T ss_dssp             CEEEEETTTTEEEEEECCCSS----C-EEEEEECTTCSSCEEEEETT-------SCEEECCTTSSSCBCBCCCTTCCSCE
T ss_pred             eEEEEECCCCcEEEEEcCCCC----C-EEEEEEccCCCceeeeeccC-------CceEEEECCCCceeeeeeeccccccc
Confidence            577888887754332111110    1 1123322 2 3466666643       36888998776543222221111112


Q ss_pred             eeEEE---CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CC-EEEEEeCcccCCCCceeee
Q 018336          181 AAGEL---NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GS-EFWVVSGYKTERQGIFDES  254 (358)
Q Consensus       181 ~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~-~lyv~gG~~~~~~~~~~~~  254 (358)
                      ..+..   ++.+++.|+.+      ..+.+||..+.+-.  ..+.........+.+  ++ ++.+.|+.+        ..
T Consensus       230 ~~v~~sp~~~~~la~g~~d------~~i~~wd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~~lasgs~D--------~~  293 (357)
T 4g56_B          230 TSVTWHPEKDDTFACGDET------GNVSLVNIKNPDSA--QTSAVHSQNITGLAYSYHSSPFLASISED--------CT  293 (357)
T ss_dssp             EEEEECTTSTTEEEEEESS------SCEEEEESSCGGGC--EEECCCSSCEEEEEECSSSSCCEEEEETT--------SC
T ss_pred             cchhhhhcccceEEEeecc------cceeEEECCCCcEe--EEEeccceeEEEEEEcCCCCCEEEEEeCC--------CE
Confidence            22222   35677776544      34889998765321  111111111122222  44 455556542        25


Q ss_pred             eEEEECCCCce
Q 018336          255 AESYQLGTGEW  265 (358)
Q Consensus       255 i~~yd~~~~~W  265 (358)
                      |.+||..+++-
T Consensus       294 i~iwd~~~~~~  304 (357)
T 4g56_B          294 VAVLDADFSEV  304 (357)
T ss_dssp             EEEECTTSCEE
T ss_pred             EEEEECCCCcE
Confidence            67899887754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=91.06  E-value=3.5  Score=36.66  Aligned_cols=148  Identities=16%  Similarity=0.149  Sum_probs=74.8

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      ++.+++.|+.+       ..+.+||..+.+....-..... .-.+++. -++.+++.|+.+.      .+.+||..+..-
T Consensus       119 ~~~~l~s~s~D-------g~i~vwd~~~~~~~~~l~~h~~-~V~~v~~~~~~~~l~sgs~D~------~i~iwd~~~~~~  184 (410)
T 1vyh_C          119 VFSVMVSASED-------ATIKVWDYETGDFERTLKGHTD-SVQDISFDHSGKLLASCSADM------TIKLWDFQGFEC  184 (410)
T ss_dssp             SSSEEEEEESS-------SCEEEEETTTCCCCEEECCCSS-CEEEEEECTTSSEEEEEETTS------CCCEEETTSSCE
T ss_pred             CCCEEEEEeCC-------CeEEEEECCCCcEEEEEeccCC-cEEEEEEcCCCCEEEEEeCCC------eEEEEeCCCCce
Confidence            45667777643       3688999887654221110011 1111222 2566777776553      377888876543


Q ss_pred             EecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCce
Q 018336          216 TELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCW  293 (358)
Q Consensus       216 ~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W  293 (358)
                      .  ..+.........+.+  ++..++.|+.+        ..+..||..++.-...  +.    .....+           
T Consensus       185 ~--~~~~~h~~~V~~v~~~p~~~~l~s~s~D--------~~i~~wd~~~~~~~~~--~~----~h~~~v-----------  237 (410)
T 1vyh_C          185 I--RTMHGHDHNVSSVSIMPNGDHIVSASRD--------KTIKMWEVQTGYCVKT--FT----GHREWV-----------  237 (410)
T ss_dssp             E--ECCCCCSSCEEEEEECSSSSEEEEEETT--------SEEEEEETTTCCEEEE--EE----CCSSCE-----------
T ss_pred             e--EEEcCCCCCEEEEEEeCCCCEEEEEeCC--------CeEEEEECCCCcEEEE--Ee----CCCccE-----------
Confidence            2  222211111222222  56666777653        3578899887653211  10    000000           


Q ss_pred             eccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceE
Q 018336          294 AETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFR  338 (358)
Q Consensus       294 ~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~  338 (358)
                               .......++++++.|+.+    ..|.+||..+.+..
T Consensus       238 ---------~~~~~~~~g~~l~s~s~D----~~v~vwd~~~~~~~  269 (410)
T 1vyh_C          238 ---------RMVRPNQDGTLIASCSND----QTVRVWVVATKECK  269 (410)
T ss_dssp             ---------EEEEECTTSSEEEEEETT----SCEEEEETTTCCEE
T ss_pred             ---------EEEEECCCCCEEEEEcCC----CeEEEEECCCCcee
Confidence                     011223456777777765    56888888776543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=91.06  E-value=5.4  Score=35.08  Aligned_cols=133  Identities=17%  Similarity=0.196  Sum_probs=63.4

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~  181 (358)
                      .+..||..+.+-...-  .....  .. .+++.. ++..++.|+.+       ..+.+||..+.+....-....  .-..
T Consensus       146 ~i~iwd~~~~~~~~~~--~~h~~--~v-~~~~~~p~~~~l~s~s~d-------~~v~iwd~~~~~~~~~~~~~~--~v~~  211 (393)
T 1erj_A          146 LIRIWDIENRKIVMIL--QGHEQ--DI-YSLDYFPSGDKLVSGSGD-------RTVRIWDLRTGQCSLTLSIED--GVTT  211 (393)
T ss_dssp             CEEEEETTTTEEEEEE--CCCSS--CE-EEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEEECSS--CEEE
T ss_pred             eEEEEECCCCcEEEEE--ccCCC--CE-EEEEEcCCCCEEEEecCC-------CcEEEEECCCCeeEEEEEcCC--CcEE
Confidence            5778888776543221  11110  11 122222 45555555532       368899998876533211111  1112


Q ss_pred             eEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEe-cCCCc---cC-cCceeEEEE--CCEEEEEeCcccCCCCcee
Q 018336          182 AGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTE-LARMT---QE-RDECEAVVI--GSEFWVVSGYKTERQGIFD  252 (358)
Q Consensus       182 ~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~p---~~-~~~~~~~~~--~~~lyv~gG~~~~~~~~~~  252 (358)
                      .+..  ++.+++.|+.+.      .+.+||..++.-.. +....   .. ......+.+  ++++++.|+.+        
T Consensus       212 ~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d--------  277 (393)
T 1erj_A          212 VAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD--------  277 (393)
T ss_dssp             EEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT--------
T ss_pred             EEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC--------
Confidence            2222  567777776543      48899998775432 21111   11 111122222  56677776643        


Q ss_pred             eeeEEEECCCC
Q 018336          253 ESAESYQLGTG  263 (358)
Q Consensus       253 ~~i~~yd~~~~  263 (358)
                      ..+..||..+.
T Consensus       278 ~~v~~wd~~~~  288 (393)
T 1erj_A          278 RSVKLWNLQNA  288 (393)
T ss_dssp             SEEEEEEC---
T ss_pred             CEEEEEECCCC
Confidence            35677887654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=90.98  E-value=12  Score=36.10  Aligned_cols=101  Identities=9%  Similarity=0.076  Sum_probs=58.7

Q ss_pred             cceeEEEECCC------C--cEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC---ceEecCCCc
Q 018336          154 VSHVFVYDFTT------R--RWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD---EWTELARMT  222 (358)
Q Consensus       154 ~~~~~~yd~~t------~--~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~p  222 (358)
                      .++++++|..+      .  .++.+..-..... ......++.+|+.+..+.   ....++.+|..+.   .|+.+.+..
T Consensus       258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~  333 (710)
T 2xdw_A          258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHS---PNYRLINIDFTDPEESKWKVLVPEH  333 (710)
T ss_dssp             CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCC
T ss_pred             ccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCcccceeccCCC
Confidence            45899999876      4  5666643222222 223345778888865432   2357999999875   488765332


Q ss_pred             cCcCceeEEEE-CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          223 QERDECEAVVI-GSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       223 ~~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      .......+... ++.+++......      ...++.+|+.+++
T Consensus       334 ~~~~~~~~~~~~~~~lv~~~~~~g------~~~l~~~~~~~g~  370 (710)
T 2xdw_A          334 EKDVLEWVACVRSNFLVLCYLHDV------KNTLQLHDLATGA  370 (710)
T ss_dssp             SSCEEEEEEEETTTEEEEEEEETT------EEEEEEEETTTCC
T ss_pred             CCCeEEEEEEEcCCEEEEEEEECC------EEEEEEEECCCCC
Confidence            21111233445 667777664321      4468889986654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=90.98  E-value=6.2  Score=32.94  Aligned_cols=146  Identities=12%  Similarity=0.032  Sum_probs=70.5

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEE----cCcC------CCCCCCcceeEEEECCCCcEEeCC
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVM----GGWD------PASYSPVSHVFVYDFTTRRWTRGK  171 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~----Gg~~------~~~~~~~~~~~~yd~~t~~W~~~~  171 (358)
                      ..+..||+.+++...+...............+..-++.+|+.    |...      .........++++|+. ++...+.
T Consensus        90 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~  168 (296)
T 3e5z_A           90 RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI  168 (296)
T ss_dssp             TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE
T ss_pred             CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee
Confidence            368889998888766533211100000111223336788886    3211      0000113479999987 5554432


Q ss_pred             -CCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECC-CCce-Ee--cCCCccCcCceeEE-EECCEEEEEeCcc
Q 018336          172 -NMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLI-KDEW-TE--LARMTQERDECEAV-VIGSEFWVVSGYK  244 (358)
Q Consensus       172 -~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W-~~--~~~~p~~~~~~~~~-~~~~~lyv~gG~~  244 (358)
                       .+..+   .+.+. -++++++....      ...+++|++. +++. ..  +-...... ...++ --+|+||+..+  
T Consensus       169 ~~~~~~---~gi~~s~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~-p~~i~~d~~G~l~v~~~--  236 (296)
T 3e5z_A          169 RDRVKP---NGLAFLPSGNLLVSDTG------DNATHRYCLNARGETEYQGVHFTVEPGK-TDGLRVDAGGLIWASAG--  236 (296)
T ss_dssp             CCCSSE---EEEEECTTSCEEEEETT------TTEEEEEEECSSSCEEEEEEEECCSSSC-CCSEEEBTTSCEEEEET--
T ss_pred             cCCCCC---ccEEECCCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeEeeCCCCC-CCeEEECCCCCEEEEcC--
Confidence             21111   22222 24655554321      2468899886 5555 21  11111111 11222 33678888761  


Q ss_pred             cCCCCceeeeeEEEECCCCceEEc
Q 018336          245 TERQGIFDESAESYQLGTGEWKRA  268 (358)
Q Consensus       245 ~~~~~~~~~~i~~yd~~~~~W~~~  268 (358)
                              ..|.+||+.......+
T Consensus       237 --------~~v~~~~~~g~~~~~~  252 (296)
T 3e5z_A          237 --------DGVHVLTPDGDELGRV  252 (296)
T ss_dssp             --------TEEEEECTTSCEEEEE
T ss_pred             --------CeEEEECCCCCEEEEE
Confidence                    2578899875544443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=90.97  E-value=2.1  Score=38.35  Aligned_cols=106  Identities=11%  Similarity=0.028  Sum_probs=55.9

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCC-CCceeeeeEE--ECCEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMP-DNRSFFAAGE--LNGRVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~-~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                      ++.+++.|+.+       ..+.+||..+..-..+-.+. ....-.+++.  .++.+++.|+.+.      .+.++|.+++
T Consensus       131 ~~~~lasGs~d-------g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~iwd~~~~  197 (435)
T 4e54_B          131 HPSTVAVGSKG-------GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG------TTRLQDFKGN  197 (435)
T ss_dssp             CTTCEEEEETT-------SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS------CEEEEETTSC
T ss_pred             CCCEEEEEeCC-------CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC------EEEEeeccCC
Confidence            34566666643       25888888776543322211 1111112222  2455666666543      4889999887


Q ss_pred             ceEecCCCccC-cCceeEE-EECCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          214 EWTELARMTQE-RDECEAV-VIGSEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       214 ~W~~~~~~p~~-~~~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      ..+.+...... .....+. .-++++++.|+.+        ..+..||....
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d--------g~i~~wd~~~~  241 (435)
T 4e54_B          198 ILRVFASSDTINIWFCSLDVSASSRMVVTGDNV--------GNVILLNMDGK  241 (435)
T ss_dssp             EEEEEECCSSCSCCCCCEEEETTTTEEEEECSS--------SBEEEEESSSC
T ss_pred             ceeEEeccCCCCccEEEEEECCCCCEEEEEeCC--------CcEeeeccCcc
Confidence            66554322211 1112222 3367777777653        35678887654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=90.95  E-value=7.2  Score=33.86  Aligned_cols=104  Identities=8%  Similarity=-0.023  Sum_probs=55.8

Q ss_pred             EEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCC-CCCceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNM-PDNRSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       139 ~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      .+++.|+.+       ..+.+||..+.+....... .....-.+++..  ++.+++.|+.+      ..+.+||..+...
T Consensus        87 ~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~  153 (383)
T 3ei3_B           87 TTVAVGSKG-------GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR------GATTLRDFSGSVI  153 (383)
T ss_dssp             TEEEEEEBT-------SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT------TEEEEEETTSCEE
T ss_pred             CEEEEEcCC-------CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEEECCCCce
Confidence            455666542       3688899887776554332 112222223333  34566666543      3589999987766


Q ss_pred             EecCCCccCcCce-eEE-EECCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          216 TELARMTQERDEC-EAV-VIGSEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       216 ~~~~~~p~~~~~~-~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      ..+.......... .+. .-++++++.|+.+        ..+..||....
T Consensus       154 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~  195 (383)
T 3ei3_B          154 QVFAKTDSWDYWYCCVDVSVSRQMLATGDST--------GRLLLLGLDGH  195 (383)
T ss_dssp             EEEECCCCSSCCEEEEEEETTTTEEEEEETT--------SEEEEEETTSC
T ss_pred             EEEeccCCCCCCeEEEEECCCCCEEEEECCC--------CCEEEEECCCC
Confidence            6554332211111 222 3356666776542        35778888544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=90.90  E-value=7.2  Score=33.83  Aligned_cols=157  Identities=13%  Similarity=0.010  Sum_probs=74.7

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      ..++.+|..+++-..+...+.     ........- ++...++....+. ......++++|..+...+.+..........
T Consensus       168 ~~l~~~d~~~g~~~~l~~~~~-----~~~~~~~sp~dg~~l~~~~~~~~-~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  241 (388)
T 3pe7_A          168 CRLMRVDLKTGESTVILQENQ-----WLGHPIYRPYDDSTVAFCHEGPH-DLVDARMWLINEDGTNMRKVKTHAEGESCT  241 (388)
T ss_dssp             EEEEEEETTTCCEEEEEEESS-----CEEEEEEETTEEEEEEEEECSCT-TTSSCSEEEEETTSCCCEESCCCCTTEEEE
T ss_pred             ceEEEEECCCCceEEeecCCc-----cccccEECCCCCCEEEEEEecCC-CCCcceEEEEeCCCCceEEeeeCCCCcccc
Confidence            578889998887665543222     112222233 3443332221111 012458999999887776665433211111


Q ss_pred             eeEE-ECCE-EEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCc-----CceeEEEECCE-EEEEe----CcccCCC
Q 018336          181 AAGE-LNGR-VIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQER-----DECEAVVIGSE-FWVVS----GYKTERQ  248 (358)
Q Consensus       181 ~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~-----~~~~~~~~~~~-lyv~g----G~~~~~~  248 (358)
                      ..+. -+++ |++......  .....++++|+.+++-+.+..++...     .......-+|+ |++..    |+.... 
T Consensus       242 ~~~~spdg~~l~~~~~~~~--~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~-  318 (388)
T 3pe7_A          242 HEFWVPDGSALVYVSYLKG--SPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIEN-  318 (388)
T ss_dssp             EEEECTTSSCEEEEEEETT--CCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CC-
T ss_pred             cceECCCCCEEEEEecCCC--CCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCC-
Confidence            1122 2444 544432211  11135999999998876665443300     00012233443 33221    111111 


Q ss_pred             CceeeeeEEEECCCCceEEcCC
Q 018336          249 GIFDESAESYQLGTGEWKRAEN  270 (358)
Q Consensus       249 ~~~~~~i~~yd~~~~~W~~~~~  270 (358)
                         ...++.+|+.+++-..+..
T Consensus       319 ---~~~i~~~d~~~~~~~~l~~  337 (388)
T 3pe7_A          319 ---DPFLYVFNMKNGTQHRVAR  337 (388)
T ss_dssp             ---CCEEEEEETTTTEEEEEEE
T ss_pred             ---CCEEEEEeccCCceEEecc
Confidence               3468899999887666553

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=90.88  E-value=1.8  Score=37.60  Aligned_cols=95  Identities=7%  Similarity=0.063  Sum_probs=47.4

Q ss_pred             ceeEEEECCCCcEEeCCCC---CCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeE
Q 018336          155 SHVFVYDFTTRRWTRGKNM---PDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEA  230 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~~~---~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~  230 (358)
                      ..+.+||..+++-......   .....-.+++. -+++.++.|+.+.      .+.++|..+++-..  .+.........
T Consensus       103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~------~i~iwd~~~~~~~~--~~~~h~~~V~~  174 (344)
T 4gqb_B          103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI------CIKVWDLAQQVVLS--SYRAHAAQVTC  174 (344)
T ss_dssp             SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEE--EECCCSSCEEE
T ss_pred             CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC------eEEEEECCCCcEEE--EEcCcCCceEE
Confidence            3688899887652211100   00011112222 2566777776543      48999998875322  12111111122


Q ss_pred             EEE--CC-EEEEEeCcccCCCCceeeeeEEEECCCCce
Q 018336          231 VVI--GS-EFWVVSGYKTERQGIFDESAESYQLGTGEW  265 (358)
Q Consensus       231 ~~~--~~-~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W  265 (358)
                      +.+  ++ .+++.|+.+        ..+..||..+++-
T Consensus       175 ~~~~~~~~~~l~s~s~D--------~~v~iwd~~~~~~  204 (344)
T 4gqb_B          175 VAASPHKDSVFLSCSED--------NRILLWDTRCPKP  204 (344)
T ss_dssp             EEECSSCTTEEEEEETT--------SCEEEEETTSSSC
T ss_pred             EEecCCCCCceeeeccc--------cccccccccccce
Confidence            222  33 467777653        2467899887653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=90.73  E-value=1.7  Score=36.99  Aligned_cols=92  Identities=13%  Similarity=0.171  Sum_probs=44.6

Q ss_pred             eeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEEC
Q 018336          156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIG  234 (358)
Q Consensus       156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~  234 (358)
                      .+.+||..+.+....-...... -.+++. -++.+++.|+.+      ..+.+||..+..-.  ..+........+....
T Consensus       196 ~i~i~d~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~s~D------g~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~  266 (340)
T 4aow_A          196 LVKVWNLANCKLKTNHIGHTGY-LNTVTVSPDGSLCASGGKD------GQAMLWDLNEGKHL--YTLDGGDIINALCFSP  266 (340)
T ss_dssp             CEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEETT------CEEEEEETTTTEEE--EEEECSSCEEEEEECS
T ss_pred             EEEEEECCCCceeeEecCCCCc-EEEEEECCCCCEEEEEeCC------CeEEEEEeccCcee--eeecCCceEEeeecCC
Confidence            5788888776543321111111 111222 256677777654      35888998775432  2222111112223334


Q ss_pred             CEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          235 SEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       235 ~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      +..++.++.+        ..+.+||..+..
T Consensus       267 ~~~~~~~~~d--------~~i~iwd~~~~~  288 (340)
T 4aow_A          267 NRYWLCAATG--------PSIKIWDLEGKI  288 (340)
T ss_dssp             SSSEEEEEET--------TEEEEEETTTTE
T ss_pred             CCceeeccCC--------CEEEEEECCCCe
Confidence            4444555432        356778887664

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=90.69  E-value=8.1  Score=33.79  Aligned_cols=108  Identities=9%  Similarity=0.120  Sum_probs=55.5

Q ss_pred             CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCC-----CceeeeeEEE-C-CEEEEEcCcCCCCCCCCeEEEEEC
Q 018336          138 GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPD-----NRSFFAAGEL-N-GRVIIAGGHDENKTALSSAWAYDL  210 (358)
Q Consensus       138 ~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~-----~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~  210 (358)
                      +.+++.|+.+       ..+.+||..+.+-...-....     ...-.+++.. + ..+++.|+.+..   ...+.+||.
T Consensus       178 ~~~l~~~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~  247 (416)
T 2pm9_A          178 AHVFASAGSS-------NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDL  247 (416)
T ss_dssp             TTEEEEESSS-------SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEET
T ss_pred             CcEEEEEcCC-------CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeC
Confidence            5677777643       368999998876543222221     1111222222 2 346666654431   125888999


Q ss_pred             CCCceEecCCCc-cCcCceeEEEE---CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          211 IKDEWTELARMT-QERDECEAVVI---GSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       211 ~t~~W~~~~~~p-~~~~~~~~~~~---~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      .+..- .+..+. ........+.+   ++++++.|+.+        ..+..||..+++
T Consensus       248 ~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d--------g~v~~wd~~~~~  296 (416)
T 2pm9_A          248 RNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD--------NTVLLWNPESAE  296 (416)
T ss_dssp             TSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESS--------SEEEEECSSSCC
T ss_pred             CCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCC--------CCEEEeeCCCCc
Confidence            87431 111122 11112222333   56777777652        357889988764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=90.69  E-value=6.4  Score=32.59  Aligned_cols=137  Identities=8%  Similarity=0.028  Sum_probs=69.7

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      ..+..||+....-..+.....     .....++. .++.+|+....       ...+.+||+.......+........-.
T Consensus       100 ~~i~~~d~~g~~~~~~~~~~~-----~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~g~~~~~~~~~~~~~~p~  167 (286)
T 1q7f_A          100 HQIQIYNQYGQFVRKFGATIL-----QHPRGVTVDNKGRIIVVECK-------VMRVIIFDQNGNVLHKFGCSKHLEFPN  167 (286)
T ss_dssp             CEEEEECTTSCEEEEECTTTC-----SCEEEEEECTTSCEEEEETT-------TTEEEEECTTSCEEEEEECTTTCSSEE
T ss_pred             CEEEEECCCCcEEEEecCccC-----CCceEEEEeCCCCEEEEECC-------CCEEEEEcCCCCEEEEeCCCCccCCcE
Confidence            367888855443333322111     11123333 35778887542       247899998665444442111111112


Q ss_pred             eeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEE
Q 018336          181 AAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAES  257 (358)
Q Consensus       181 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~  257 (358)
                      +.+. -++.+|+....      ...+.+||+.......+.... .......+.+  +|++|+.....       ...+.+
T Consensus       168 ~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~-------~~~i~~  233 (286)
T 1q7f_A          168 GVVVNDKQEIFISDNR------AHCVKVFNYEGQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHN-------NFNLTI  233 (286)
T ss_dssp             EEEECSSSEEEEEEGG------GTEEEEEETTCCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSS-------SCEEEE
T ss_pred             EEEECCCCCEEEEECC------CCEEEEEcCCCCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCCC-------CEEEEE
Confidence            2222 25789987532      246999998665444443211 1112223333  67888887432       126788


Q ss_pred             EECCCCc
Q 018336          258 YQLGTGE  264 (358)
Q Consensus       258 yd~~~~~  264 (358)
                      ||+....
T Consensus       234 ~~~~g~~  240 (286)
T 1q7f_A          234 FTQDGQL  240 (286)
T ss_dssp             ECTTSCE
T ss_pred             ECCCCCE
Confidence            9876543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=90.62  E-value=7.2  Score=33.08  Aligned_cols=56  Identities=18%  Similarity=0.161  Sum_probs=32.6

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-C-CEEEEEcCcCCCCCCCcceeEEEECCCCcEE
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-Q-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWT  168 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~  168 (358)
                      ..+.++|+.+++....-..+....  .  ..++.. + ..+|+.+..       ...+++||+.+.+..
T Consensus        21 ~~v~~~d~~~~~~~~~~~~~~~~~--~--~~~~~s~dg~~~~v~~~~-------~~~i~~~d~~t~~~~   78 (349)
T 1jmx_B           21 NNLHVVDVASDTVYKSCVMPDKFG--P--GTAMMAPDNRTAYVLNNH-------YGDIYGIDLDTCKNT   78 (349)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCS--S--CEEEECTTSSEEEEEETT-------TTEEEEEETTTTEEE
T ss_pred             CeEEEEECCCCcEEEEEecCCCCC--C--ceeEECCCCCEEEEEeCC-------CCcEEEEeCCCCcEE
Confidence            378899999887544322222000  1  133332 3 457777642       347999999887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=90.59  E-value=10  Score=36.91  Aligned_cols=134  Identities=10%  Similarity=-0.014  Sum_probs=65.0

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCC-cEEe-CCCCCCCcee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTR-RWTR-GKNMPDNRSF  179 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~-~W~~-~~~~~~~~~~  179 (358)
                      .+..||..+++....-.....    ... +++.. ++..++.|+.       ...+.+||..++ .... +..-..  .-
T Consensus        78 ~i~vw~~~~~~~~~~~~~~~~----~v~-~~~~s~~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~--~v  143 (814)
T 3mkq_A           78 RIRVFNYNTGEKVVDFEAHPD----YIR-SIAVHPTKPYVLSGSD-------DLTVKLWNWENNWALEQTFEGHEH--FV  143 (814)
T ss_dssp             EEEEEETTTCCEEEEEECCSS----CEE-EEEECSSSSEEEEEET-------TSEEEEEEGGGTSEEEEEEECCSS--CE
T ss_pred             eEEEEECCCCcEEEEEecCCC----CEE-EEEEeCCCCEEEEEcC-------CCEEEEEECCCCceEEEEEcCCCC--cE
Confidence            678899888765432211110    111 22222 4545555553       236889998775 2222 111111  11


Q ss_pred             eeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE---CCEEEEEeCcccCCCCceeee
Q 018336          180 FAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI---GSEFWVVSGYKTERQGIFDES  254 (358)
Q Consensus       180 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~---~~~lyv~gG~~~~~~~~~~~~  254 (358)
                      .+++..  ++..++.|+.+      ..+.+||..+..-..............+...   ++.++++|+.+        ..
T Consensus       144 ~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------g~  209 (814)
T 3mkq_A          144 MCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD--------LT  209 (814)
T ss_dssp             EEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT--------SE
T ss_pred             EEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC--------CE
Confidence            222222  45566666543      3588999866532211111111111122222   67777777653        35


Q ss_pred             eEEEECCCCc
Q 018336          255 AESYQLGTGE  264 (358)
Q Consensus       255 i~~yd~~~~~  264 (358)
                      +..||..+++
T Consensus       210 i~~~d~~~~~  219 (814)
T 3mkq_A          210 IKIWDYQTKS  219 (814)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEEECCCCc
Confidence            7889987764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=90.47  E-value=8.9  Score=33.94  Aligned_cols=133  Identities=15%  Similarity=0.200  Sum_probs=65.5

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~  181 (358)
                      .+..||..+++-...-....   . ... +++. .++.+++.|+.+       ..+.+||..+.+-..  .+......-.
T Consensus       131 ~i~vwd~~~~~~~~~l~~h~---~-~V~-~v~~~~~~~~l~sgs~D-------~~i~iwd~~~~~~~~--~~~~h~~~V~  196 (410)
T 1vyh_C          131 TIKVWDYETGDFERTLKGHT---D-SVQ-DISFDHSGKLLASCSAD-------MTIKLWDFQGFECIR--TMHGHDHNVS  196 (410)
T ss_dssp             CEEEEETTTCCCCEEECCCS---S-CEE-EEEECTTSSEEEEEETT-------SCCCEEETTSSCEEE--CCCCCSSCEE
T ss_pred             eEEEEECCCCcEEEEEeccC---C-cEE-EEEEcCCCCEEEEEeCC-------CeEEEEeCCCCceeE--EEcCCCCCEE
Confidence            57778877765432211111   0 111 2222 256677777654       357788887654322  2221111111


Q ss_pred             eEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE--ECCEEEEEeCcccCCCCceeeeeEE
Q 018336          182 AGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV--IGSEFWVVSGYKTERQGIFDESAES  257 (358)
Q Consensus       182 ~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~--~~~~lyv~gG~~~~~~~~~~~~i~~  257 (358)
                      .+.+  ++..++.|+.+      ..+.+||..++.-...  +.........+.  -++.+++.|+.+        ..+..
T Consensus       197 ~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~D--------~~v~v  260 (410)
T 1vyh_C          197 SVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSND--------QTVRV  260 (410)
T ss_dssp             EEEECSSSSEEEEEETT------SEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEETT--------SCEEE
T ss_pred             EEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcCC--------CeEEE
Confidence            2222  45566666644      3589999987753221  111111112222  256677777653        34678


Q ss_pred             EECCCCce
Q 018336          258 YQLGTGEW  265 (358)
Q Consensus       258 yd~~~~~W  265 (358)
                      ||..+++.
T Consensus       261 wd~~~~~~  268 (410)
T 1vyh_C          261 WVVATKEC  268 (410)
T ss_dssp             EETTTCCE
T ss_pred             EECCCCce
Confidence            88877654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=90.24  E-value=6.5  Score=32.91  Aligned_cols=106  Identities=8%  Similarity=0.147  Sum_probs=54.8

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee-eeeEEE---CCEEEEEcCcCCCCCCCCeEEEEECCC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF-FAAGEL---NGRVIIAGGHDENKTALSSAWAYDLIK  212 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t  212 (358)
                      ++..++.|+.+       ..+.+||..+.+.+.+..+...... .+++..   ++.+++.|+.+      ..+.++|..+
T Consensus        20 ~g~~las~s~D-------~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D------~~v~iWd~~~   86 (297)
T 2pm7_B           20 YGKRMATCSSD-------KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVMIWKEEN   86 (297)
T ss_dssp             TSSEEEEEETT-------SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------TEEEEEEBSS
T ss_pred             CCCEEEEEeCC-------CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC------CEEEEEEcCC
Confidence            46666666643       3578888765443322222211111 122221   25566666654      3588999988


Q ss_pred             CceEecCCCccCcCceeEEEEC----CEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          213 DEWTELARMTQERDECEAVVIG----SEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       213 ~~W~~~~~~p~~~~~~~~~~~~----~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      +.|..+..+.........+.+.    +.+++.|+.+        ..+..||..++
T Consensus        87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d--------~~v~~wd~~~~  133 (297)
T 2pm7_B           87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD--------GKVSVVEFKEN  133 (297)
T ss_dssp             SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT--------SEEEEEEBCSS
T ss_pred             CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC--------CcEEEEEecCC
Confidence            8776554332222222233332    5566666543        34677887654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=90.22  E-value=8.6  Score=33.38  Aligned_cols=67  Identities=12%  Similarity=0.063  Sum_probs=35.5

Q ss_pred             CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCC-ccC---cCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEE
Q 018336          186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM-TQE---RDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQ  259 (358)
Q Consensus       186 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-p~~---~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd  259 (358)
                      ++ +++.|+.+      ..+.+||..+..-...-.. ...   ......+.+  ++++++.|+.+..     ...+..||
T Consensus       197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~-----~g~i~i~d  264 (397)
T 1sq9_A          197 RG-LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS-----FGCITLYE  264 (397)
T ss_dssp             TS-EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT-----EEEEEEEE
T ss_pred             Cc-eEEEEeCC------CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCC-----CceEEEEE
Confidence            45 66666533      4699999987654322111 001   112222232  5667777654311     25788999


Q ss_pred             CCCCc
Q 018336          260 LGTGE  264 (358)
Q Consensus       260 ~~~~~  264 (358)
                      ..+.+
T Consensus       265 ~~~~~  269 (397)
T 1sq9_A          265 TEFGE  269 (397)
T ss_dssp             TTTCC
T ss_pred             CCCCc
Confidence            98764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=90.16  E-value=9.4  Score=33.70  Aligned_cols=146  Identities=11%  Similarity=-0.047  Sum_probs=78.8

Q ss_pred             ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCC--CCCCCceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336          136 SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGK--NMPDNRSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLI  211 (358)
Q Consensus       136 ~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~  211 (358)
                      .++.||+.-..       ...++++++....-+.+.  .+..|   .+.++.  ++.||+.--.     ....++++++.
T Consensus       169 ~~g~lY~~d~~-------~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~-----~~~~I~r~~~d  233 (386)
T 3v65_B          169 VHDKLYWTDSG-------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWG-----NTPRIEASSMD  233 (386)
T ss_dssp             TTTEEEEEETT-------TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECS-----SSCEEEEEETT
T ss_pred             CCCeEEEEcCC-------CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccC-----CCCEEEEEeCC
Confidence            47899988542       347888888655433332  12222   233333  6889988421     13579999987


Q ss_pred             CCceEecCCCccCcCceeEEE--ECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCc
Q 018336          212 KDEWTELARMTQERDECEAVV--IGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGK  289 (358)
Q Consensus       212 t~~W~~~~~~p~~~~~~~~~~--~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~  289 (358)
                      ...-+.+.... .....++++  .+++||+.-..        ...|+++|+....-..+....    .            
T Consensus       234 G~~~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~--------~~~I~~~d~dG~~~~~~~~~~----~------------  288 (386)
T 3v65_B          234 GSGRRIIADTH-LFWPNGLTIDYAGRRMYWVDAK--------HHVIERANLDGSHRKAVISQG----L------------  288 (386)
T ss_dssp             SCSCEEEECSS-CSCEEEEEEEGGGTEEEEEETT--------TTEEEEECTTSCSCEEEECSS----C------------
T ss_pred             CCCcEEEEECC-CCCeeeEEEeCCCCEEEEEECC--------CCEEEEEeCCCCeeEEEEECC----C------------
Confidence            54333332111 111123333  36889998642        347888988743222221110    0            


Q ss_pred             cCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          290 LFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       290 ~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                                 ....++++.++.||+..-..    ..|.++|..+++
T Consensus       289 -----------~~P~giav~~~~ly~td~~~----~~V~~~~~~~G~  320 (386)
T 3v65_B          289 -----------PHPFAITVFEDSLYWTDWHT----KSINSANKFTGK  320 (386)
T ss_dssp             -----------SSEEEEEEETTEEEEEETTT----TEEEEEETTTCC
T ss_pred             -----------CCceEEEEECCEEEEeeCCC----CeEEEEECCCCc
Confidence                       11223455889999985332    578888854443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=90.05  E-value=9.3  Score=33.50  Aligned_cols=93  Identities=8%  Similarity=0.071  Sum_probs=46.1

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEE-eCCCCCCCceee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWT-RGKNMPDNRSFF  180 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~-~~~~~~~~~~~~  180 (358)
                      .+..||..+++-.........    .. .+++.. ++.+++.|+.+       ..+.+||..+.+-. .+..-  ...-.
T Consensus       120 ~i~iwd~~~~~~~~~~~~h~~----~v-~~~~~~~~~~~l~s~s~d-------~~i~iwd~~~~~~~~~~~~h--~~~v~  185 (420)
T 3vl1_A          120 DIKVLDSNFNLQREIDQAHVS----EI-TKLKFFPSGEALISSSQD-------MQLKIWSVKDGSNPRTLIGH--RATVT  185 (420)
T ss_dssp             CEEEECTTSCEEEEETTSSSS----CE-EEEEECTTSSEEEEEETT-------SEEEEEETTTCCCCEEEECC--SSCEE
T ss_pred             CEEEEeCCCcceeeecccccC----cc-EEEEECCCCCEEEEEeCC-------CeEEEEeCCCCcCceEEcCC--CCcEE
Confidence            577888876654433211110    11 122222 45566666542       37899998765421 11110  11111


Q ss_pred             eeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          181 AAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       181 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      +++.. ++..++.|+.+.      .+.+||..+++-
T Consensus       186 ~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~  215 (420)
T 3vl1_A          186 DIAIIDRGRNVLSASLDG------TIRLWECGTGTT  215 (420)
T ss_dssp             EEEEETTTTEEEEEETTS------CEEEEETTTTEE
T ss_pred             EEEEcCCCCEEEEEcCCC------cEEEeECCCCce
Confidence            22222 455666665443      488999887643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=90.02  E-value=5.8  Score=34.48  Aligned_cols=104  Identities=12%  Similarity=0.120  Sum_probs=52.2

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++.+++.|+.+       ..+.+||..+.+-......+...........  ++.+++.|+.+      ..+.+||..+..
T Consensus       111 ~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~  177 (408)
T 4a11_B          111 DTGMFTSSSFD-------KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGS  177 (408)
T ss_dssp             CTTCEEEEETT-------SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS------SSEEEEESSSSC
T ss_pred             CCcEEEEEeCC-------CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcc
Confidence            44566666532       3789999988765443322222221111111  34466666543      358999987654


Q ss_pred             eEecCCCccCcCceeEEEE--CCE-EEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          215 WTELARMTQERDECEAVVI--GSE-FWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       215 W~~~~~~p~~~~~~~~~~~--~~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      -..  .+.........+.+  ++. +++.|+.+        ..+..||..+.
T Consensus       178 ~~~--~~~~~~~~v~~~~~~~~~~~ll~~~~~d--------g~i~i~d~~~~  219 (408)
T 4a11_B          178 CSH--ILQGHRQEILAVSWSPRYDYILATASAD--------SRVKLWDVRRA  219 (408)
T ss_dssp             CCE--EECCCCSCEEEEEECSSCTTEEEEEETT--------SCEEEEETTCS
T ss_pred             eee--eecCCCCcEEEEEECCCCCcEEEEEcCC--------CcEEEEECCCC
Confidence            221  11111111122222  333 67776543        34678888765

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=89.96  E-value=15  Score=35.63  Aligned_cols=104  Identities=12%  Similarity=0.075  Sum_probs=60.9

Q ss_pred             cceeEEEECCCC--c-EEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCC--CceEecCCCccCcCce
Q 018336          154 VSHVFVYDFTTR--R-WTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIK--DEWTELARMTQERDEC  228 (358)
Q Consensus       154 ~~~~~~yd~~t~--~-W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~p~~~~~~  228 (358)
                      .++++++|..+.  . |+.+..-....... ....++.||+....+   .....++.+|..+  ..|+.+-+-.... ..
T Consensus       293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~---~~~~~l~~~d~~~~~~~~~~l~~~~~~~-l~  367 (741)
T 1yr2_A          293 VNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDG---APLKKIVRVDLSGSTPRFDTVVPESKDN-LE  367 (741)
T ss_dssp             CCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTT---CTTCEEEEEECSSSSCEEEEEECCCSSE-EE
T ss_pred             cceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCC---CCCCEEEEEeCCCCccccEEEecCCCCe-EE
Confidence            468999999877  6 77765433222222 224577888875432   1235799999987  5788765322211 11


Q ss_pred             eEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEc
Q 018336          229 EAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRA  268 (358)
Q Consensus       229 ~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~  268 (358)
                      .....++++++......      ...++.+|...+.-..+
T Consensus       368 ~~~~~~~~lv~~~~~dg------~~~l~~~~~~g~~~~~l  401 (741)
T 1yr2_A          368 SVGIAGNRLFASYIHDA------KSQVLAFDLDGKPAGAV  401 (741)
T ss_dssp             EEEEEBTEEEEEEEETT------EEEEEEEETTSCEEEEC
T ss_pred             EEEEECCEEEEEEEECC------EEEEEEEeCCCCceeec
Confidence            23345778777764431      44678888755433333

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=89.95  E-value=3.6  Score=34.79  Aligned_cols=106  Identities=11%  Similarity=0.023  Sum_probs=51.6

Q ss_pred             ceeEEEECCCCcEEeCCCCCCCc-eeeeeEE-ECC-EEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccC----cCc
Q 018336          155 SHVFVYDFTTRRWTRGKNMPDNR-SFFAAGE-LNG-RVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQE----RDE  227 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~~~~~~~-~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~----~~~  227 (358)
                      ..+.++|..+.+-...-.++... ....++. -++ .+|+.+..      ...+.++|+.+++-...-..+..    ...
T Consensus        11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~   84 (337)
T 1pby_B           11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDLSTPEERVKSL   84 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEECCBTTEEEECT
T ss_pred             CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEeeEEcCCcccccccc
Confidence            47899999887654322222210 0122222 244 67777542      24699999988765432112110    011


Q ss_pred             eeEEE-ECC-EEEEEeCcccCCCCce---eeeeEEEECCCCceE
Q 018336          228 CEAVV-IGS-EFWVVSGYKTERQGIF---DESAESYQLGTGEWK  266 (358)
Q Consensus       228 ~~~~~-~~~-~lyv~gG~~~~~~~~~---~~~i~~yd~~~~~W~  266 (358)
                      ..++. -++ .+|+...........+   ...+.+||+.+++..
T Consensus        85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~  128 (337)
T 1pby_B           85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR  128 (337)
T ss_dssp             TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred             cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE
Confidence            12222 245 5666642111000111   357889999887643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=89.93  E-value=7.3  Score=33.35  Aligned_cols=26  Identities=12%  Similarity=-0.203  Sum_probs=18.7

Q ss_pred             EeCCeEEEECCCCCCCCceEEEEECCCCce
Q 018336          308 ELGGCTLVTGSGYQGGPQEFYVVEGRNGKF  337 (358)
Q Consensus       308 ~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W  337 (358)
                      ..++++++.|+.+    ..|.+||..+.+-
T Consensus       179 ~pdg~~lasg~~d----g~i~iwd~~~~~~  204 (343)
T 3lrv_A          179 HKDSLLLALYSPD----GILDVYNLSSPDQ  204 (343)
T ss_dssp             CTTSCEEEEECTT----SCEEEEESSCTTS
T ss_pred             CCCCCEEEEEcCC----CEEEEEECCCCCC
Confidence            3467777777765    5788899887654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=89.85  E-value=8.6  Score=32.79  Aligned_cols=147  Identities=11%  Similarity=-0.062  Sum_probs=80.9

Q ss_pred             ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCC--CCCCCceeeeeEE--ECCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336          136 SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGK--NMPDNRSFFAAGE--LNGRVIIAGGHDENKTALSSAWAYDLI  211 (358)
Q Consensus       136 ~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~  211 (358)
                      .++.||+.-..       ...+.++|+....-+.+.  .+..|   .+.++  .++.||+....     ....++++++.
T Consensus        87 ~~~~ly~~d~~-------~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~-----~~~~I~~~~~d  151 (316)
T 1ijq_A           87 IHSNIYWTDSV-------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG-----TPAKIKKGGLN  151 (316)
T ss_dssp             TTTEEEEEETT-------TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECS-----SSCEEEEEETT
T ss_pred             cCCeEEEEECC-------CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccC-----CCCeEEEEcCC
Confidence            47899998542       357899998765444332  22222   23333  36899998521     12579999986


Q ss_pred             CCceEecCCCccCcCce-eEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecC
Q 018336          212 KDEWTELARMTQERDEC-EAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREG  288 (358)
Q Consensus       212 t~~W~~~~~~p~~~~~~-~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~  288 (358)
                      ...-+.+...  ..... ++++-  +++||+.-..        ...|+++|+....-+.+......  .           
T Consensus       152 G~~~~~~~~~--~~~~P~gla~d~~~~~lY~~D~~--------~~~I~~~d~dg~~~~~~~~~~~~--~-----------  208 (316)
T 1ijq_A          152 GVDIYSLVTE--NIQWPNGITLDLLSGRLYWVDSK--------LHSISSIDVNGGNRKTILEDEKR--L-----------  208 (316)
T ss_dssp             SCCEEEEECS--SCSCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCSCEEEEECTTT--T-----------
T ss_pred             CCCeEEEEEC--CCCCceEEEEeccCCEEEEEECC--------CCeEEEEecCCCceEEEeecCCc--c-----------
Confidence            5433333211  11222 33333  5789998643        34788999875432222211000  0           


Q ss_pred             ccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          289 KLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       289 ~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                                  ....+++..++.||+.-...    ..|.++|+.+++
T Consensus       209 ------------~~P~giav~~~~ly~~d~~~----~~V~~~~~~~g~  240 (316)
T 1ijq_A          209 ------------AHPFSLAVFEDKVFWTDIIN----EAIFSANRLTGS  240 (316)
T ss_dssp             ------------SSEEEEEEETTEEEEEETTT----TEEEEEETTTCC
T ss_pred             ------------CCcEEEEEECCEEEEEECCC----CeEEEEeCCCCc
Confidence                        11123455688999876432    578888876554

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=89.83  E-value=7.4  Score=32.00  Aligned_cols=107  Identities=6%  Similarity=-0.143  Sum_probs=58.2

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++.||+....       ...++++|+.+..-..+...... .-.+.+..  ++.+|+.-..      ...+.++++....
T Consensus        47 ~~~ly~~d~~-------~~~I~~~~~~g~~~~~~~~~~~~-~p~~ia~d~~~~~lyv~d~~------~~~I~~~~~~g~~  112 (267)
T 1npe_A           47 DKVVYWTDIS-------EPSIGRASLHGGEPTTIIRQDLG-SPEGIALDHLGRTIFWTDSQ------LDRIEVAKMDGTQ  112 (267)
T ss_dssp             TTEEEEEETT-------TTEEEEEESSSCCCEEEECTTCC-CEEEEEEETTTTEEEEEETT------TTEEEEEETTSCS
T ss_pred             CCEEEEEECC-------CCEEEEEecCCCCcEEEEECCCC-CccEEEEEecCCeEEEEECC------CCEEEEEEcCCCC
Confidence            5789998642       35799999987643332211111 22334443  5799998432      3578999987543


Q ss_pred             eEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          215 WTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       215 W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      -+.+..... .....+++-  +++||+.....  .    ...|+++++....
T Consensus       113 ~~~~~~~~~-~~P~~i~vd~~~g~lyv~~~~~--~----~~~I~~~~~dg~~  157 (267)
T 1npe_A          113 RRVLFDTGL-VNPRGIVTDPVRGNLYWTDWNR--D----NPKIETSHMDGTN  157 (267)
T ss_dssp             CEEEECSSC-SSEEEEEEETTTTEEEEEECCS--S----SCEEEEEETTSCC
T ss_pred             EEEEEECCC-CCccEEEEeeCCCEEEEEECCC--C----CcEEEEEecCCCC
Confidence            333321111 111233333  67899986321  0    2467788876543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=89.81  E-value=4.2  Score=34.42  Aligned_cols=108  Identities=6%  Similarity=-0.013  Sum_probs=58.7

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECC-EEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNG-RVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      .+.+|+.+..       ...+.+||+.+++....-..+.  ....++. -++ .+|+.+..+      ..+++||+.+++
T Consensus         9 ~~~~~v~~~~-------~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~   73 (331)
T 3u4y_A            9 SNFGIVVEQH-------LRRISFFSTDTLEILNQITLGY--DFVDTAITSDCSNVVVTSDFC------QTLVQIETQLEP   73 (331)
T ss_dssp             CCEEEEEEGG-------GTEEEEEETTTCCEEEEEECCC--CEEEEEECSSSCEEEEEESTT------CEEEEEECSSSS
T ss_pred             CCEEEEEecC-------CCeEEEEeCcccceeeeEEccC--CcceEEEcCCCCEEEEEeCCC------CeEEEEECCCCc
Confidence            5677887653       3489999999988755433322  1223332 244 577775422      379999998877


Q ss_pred             e-E-ecCCCccCcCceeEE-EECCE-EEEEeCcccCCCCceeeeeEEEECCCCceEE
Q 018336          215 W-T-ELARMTQERDECEAV-VIGSE-FWVVSGYKTERQGIFDESAESYQLGTGEWKR  267 (358)
Q Consensus       215 W-~-~~~~~p~~~~~~~~~-~~~~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~  267 (358)
                      . . .+.....+  ...++ .-+++ +| .+.....     ...+.+||+.+++-..
T Consensus        74 ~~~~~~~~~~~~--~~~~~~s~dg~~l~-~~~~~~~-----~~~i~v~d~~~~~~~~  122 (331)
T 3u4y_A           74 PKVVAIQEGQSS--MADVDITPDDQFAV-TVTGLNH-----PFNMQSYSFLKNKFIS  122 (331)
T ss_dssp             CEEEEEEECSSC--CCCEEECTTSSEEE-ECCCSSS-----SCEEEEEETTTTEEEE
T ss_pred             eeEEecccCCCC--ccceEECCCCCEEE-EecCCCC-----cccEEEEECCCCCeEE
Confidence            4 2 22211111  11122 23444 55 3322100     2268899998876543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=89.72  E-value=9.1  Score=33.88  Aligned_cols=93  Identities=9%  Similarity=0.123  Sum_probs=53.5

Q ss_pred             ceeEEEECCCCcEEeCCCCCCCceeeeeEE--ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE
Q 018336          155 SHVFVYDFTTRRWTRGKNMPDNRSFFAAGE--LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV  232 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~  232 (358)
                      +.+++||..+++...+-.+......-..+.  -++..++.|+.+.      .+.+||..+++-...  +.........+.
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~--~~~h~~~v~~~s  196 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRN--MTSHSARVGSLS  196 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEE--ECCCSSCEEEEE
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEE--EeCCCCceEEEe
Confidence            379999999987765433332222122222  2567777776543      499999988753322  222222234456


Q ss_pred             ECCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          233 IGSEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       233 ~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      .++.+.+.|+..        ..+..+|....
T Consensus       197 ~~~~~l~sgs~d--------~~i~~~d~~~~  219 (420)
T 4gga_A          197 WNSYILSSGSRS--------GHIHHHDVRVA  219 (420)
T ss_dssp             EETTEEEEEETT--------SEEEEEETTSS
T ss_pred             eCCCEEEEEeCC--------CceeEeeeccc
Confidence            678877777653        24566776654

>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}

Probab=89.67  E-value=7.2  Score=31.64  Aligned_cols=147  Identities=8%  Similarity=0.051  Sum_probs=76.6

Q ss_pred             ECCEEEEEcCcCCCCCCCcceeEEEEC---------------CCCcEEeCCCCCCCceeeeeEE--ECCEEEEEcCcCCC
Q 018336          136 SQGKLVVMGGWDPASYSPVSHVFVYDF---------------TTRRWTRGKNMPDNRSFFAAGE--LNGRVIIAGGHDEN  198 (358)
Q Consensus       136 ~~~~lyv~Gg~~~~~~~~~~~~~~yd~---------------~t~~W~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~  198 (358)
                      .++.+|++-|         ..+|+++.               .+..|..+|..+.......+++  .++.+|++-|    
T Consensus        12 ~~ge~~fFk~---------~~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg----   78 (225)
T 3oyo_A           12 SEYEVYFFAK---------NKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG----   78 (225)
T ss_dssp             STTEEEEEET---------TEEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET----
T ss_pred             CCCEEEEEEC---------CEEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC----
Confidence            4789999976         25777771               1223433433222222333333  5799999965    


Q ss_pred             CCCCCeEEEEECCC----CceEe----c----CCCccC--cCceeEE-E--ECCEEEEEeCcccCCCCceeeeeEEEECC
Q 018336          199 KTALSSAWAYDLIK----DEWTE----L----ARMTQE--RDECEAV-V--IGSEFWVVSGYKTERQGIFDESAESYQLG  261 (358)
Q Consensus       199 ~~~~~~~~~yd~~t----~~W~~----~----~~~p~~--~~~~~~~-~--~~~~lyv~gG~~~~~~~~~~~~i~~yd~~  261 (358)
                          ..+++||..+    +....    +    +.+|..  ...-.++ .  .++++|++-|.          ..++||..
T Consensus        79 ----~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG~----------~yw~~d~~  144 (225)
T 3oyo_A           79 ----NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGN----------KYVRIAYD  144 (225)
T ss_dssp             ----TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEETT----------EEEEEETT
T ss_pred             ----CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeCC----------eEEEEECC
Confidence                3578886532    11111    1    123321  0022233 2  37899999764          35789877


Q ss_pred             CCceEEcCCccccCCCCCceeeeeecCccCceecc-----ccceeeceEEEE-eCCeEEEECCCCCCCCceEEEEECCC
Q 018336          262 TGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAET-----EAAVQFGTCRVE-LGGCTLVTGSGYQGGPQEFYVVEGRN  334 (358)
Q Consensus       262 ~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~l-----p~~~r~~~~~~~-~~~~i~v~gG~~~~~~~~i~~yd~~~  334 (358)
                      +++...- +.+..                +.|..+     |.  +..+++.. .++++|++-|      +..|+||..+
T Consensus       145 ~~~~~~g-Pk~I~----------------~~fpg~~~~~f~~--~iDAAf~~~~~g~~YfFkG------~~ywr~d~~~  198 (225)
T 3oyo_A          145 SKQLVGN-IRNIG----------------DGFPVLNGTEFES--GIDACFASHKEPEAYLFKG------QNYVRIDFTP  198 (225)
T ss_dssp             TTEEEEE-EEEHH----------------HHCGGGTTSTTTT--CCSEEEECSSTTEEEEEET------TEEEEEECCT
T ss_pred             CCeecCC-Ccchh----------------hcCCCcccccCCC--CcCEEEEeCCCCEEEEEEC------CEEEEEeCCc
Confidence            7655431 10000                012111     11  12222222 4799999998      4899999983

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=89.47  E-value=9  Score=32.51  Aligned_cols=138  Identities=9%  Similarity=0.126  Sum_probs=67.0

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-C---CEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCC
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-Q---GKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDN  176 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~---~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~  176 (358)
                      .+..||..+++...........   . -.+++.. +   +.+++.|+.+       ..+.+||..+..  -..+.....+
T Consensus        45 ~v~iw~~~~~~~~~~~~~~~~~---~-v~~~~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~  113 (357)
T 3i2n_A           45 VIQLYEIQHGDLKLLREIEKAK---P-IKCGTFGATSLQQRYLATGDFG-------GNLHIWNLEAPEMPVYSVKGHKEI  113 (357)
T ss_dssp             EEEEEEECSSSEEEEEEEEESS---C-EEEEECTTCCTTTCCEEEEETT-------SCEEEECTTSCSSCSEEECCCSSC
T ss_pred             EEEEEeCCCCcccceeeecccC---c-EEEEEEcCCCCCCceEEEecCC-------CeEEEEeCCCCCccEEEEEecccc
Confidence            6788888887765442221110   1 1122222 2   3666666543       368888887764  1222211111


Q ss_pred             ceeeee-----EEECCEEEEEcCcCCCCCCCCeEEEEECCCCc--eEecCCCccC-cCceeEEE------ECCEEEEEeC
Q 018336          177 RSFFAA-----GELNGRVIIAGGHDENKTALSSAWAYDLIKDE--WTELARMTQE-RDECEAVV------IGSEFWVVSG  242 (358)
Q Consensus       177 ~~~~~~-----~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~-~~~~~~~~------~~~~lyv~gG  242 (358)
                      ......     ..-++..++.|+.+      ..+.+||..+..  ...+...... ......+.      -++++++.|+
T Consensus       114 v~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~  187 (357)
T 3i2n_A          114 INAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY  187 (357)
T ss_dssp             EEEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE
T ss_pred             eEEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc
Confidence            111110     01245566666543      358899998764  3333322221 11111222      4677777775


Q ss_pred             cccCCCCceeeeeEEEECCCCce
Q 018336          243 YKTERQGIFDESAESYQLGTGEW  265 (358)
Q Consensus       243 ~~~~~~~~~~~~i~~yd~~~~~W  265 (358)
                      .+        ..+..||..+.+-
T Consensus       188 ~d--------~~i~i~d~~~~~~  202 (357)
T 3i2n_A          188 DN--------GDIKLFDLRNMAL  202 (357)
T ss_dssp             TT--------SEEEEEETTTTEE
T ss_pred             cC--------CeEEEEECccCce
Confidence            42        3578899987753

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=89.34  E-value=5.6  Score=36.11  Aligned_cols=156  Identities=8%  Similarity=0.070  Sum_probs=81.4

Q ss_pred             eeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe--C----CCCCCCceeeeeEE---ECCEEEEEcCcCCCCC
Q 018336          130 FCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR--G----KNMPDNRSFFAAGE---LNGRVIIAGGHDENKT  200 (358)
Q Consensus       130 ~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~--~----~~~~~~~~~~~~~~---~~~~iyv~GG~~~~~~  200 (358)
                      .-+++...+.+|++-|.         .+|+++.....+..  +    +.+|..   ..++.   .++++|++-|      
T Consensus       265 fDAi~~~~ge~y~Fkg~---------~~wr~~~~~~~~~p~~I~~~Wp~LP~~---iDAa~~~~~~g~~~fFKg------  326 (450)
T 1su3_A          265 FDAITTIRGEVMFFKDR---------FYMRTNPFYPEVELNFISVFWPQLPNG---LEAAYEFADRDEVRFFKG------  326 (450)
T ss_dssp             CSEEEEETTEEEEEETT---------EEEECCTTSSSCEEEEGGGTCTTSCSS---CCEEEEEGGGTEEEEEET------
T ss_pred             cceEEecCCeEEEEeCC---------EEEEEcCCCCcccceehhHhccCCCCC---eeEEEEEcCCCeEEEEeC------
Confidence            44667789999999772         46666654333211  1    223322   22232   3689999854      


Q ss_pred             CCCeEEEEECCCC--ce-EecC---CCccCcCce-eEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCc
Q 018336          201 ALSSAWAYDLIKD--EW-TELA---RMTQERDEC-EAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENA  271 (358)
Q Consensus       201 ~~~~~~~yd~~t~--~W-~~~~---~~p~~~~~~-~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~  271 (358)
                        ..+++|+..+-  .+ +.+.   .+|...... +++..  ++++|++-|.          ..++||..+.+-.  ..-
T Consensus       327 --~~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG~----------~yw~yd~~~~~~~--~gY  392 (450)
T 1su3_A          327 --NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN----------KYWRYDEYKRSMD--PGY  392 (450)
T ss_dssp             --TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT----------EEEEEETTTTEEC--SSC
T ss_pred             --CEEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeCC----------EEEEEeCCCcccc--CCC
Confidence              34677764320  00 1111   123211122 23333  6899999763          4578887654311  111


Q ss_pred             cccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336          272 WKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       272 p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                            |+..        .+.|..+|..  .. +++..++++|+|-|      +..|+||..+++=...
T Consensus       393 ------Pk~I--------~~~fpgip~~--iD-AA~~~~g~~YFFkg------~~ywr~d~~~~~v~~~  438 (450)
T 1su3_A          393 ------PKMI--------AHDFPGIGHK--VD-AVFMKDGFFYFFHG------TRQYKFDPKTKRILTL  438 (450)
T ss_dssp             ------SEEH--------HHHSTTSCSC--CS-EEEEETTEEEEEET------TEEEEEETTTTEEEEE
T ss_pred             ------Ccch--------hhcCCCCCCC--cc-EEEEcCCeEEEEeC------CEEEEEECCcceEecc
Confidence                  1110        0123333321  22 23346899999988      4799999988765443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=89.13  E-value=6.1  Score=35.06  Aligned_cols=95  Identities=15%  Similarity=0.156  Sum_probs=51.7

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      ..+..+|..+++-..+-.+.....  .. .+++.. ++..++.|+.+       ..+.+||..+.+-....  .......
T Consensus       125 ~tV~lWd~~tg~~~~~~~~~~~~~--~V-~sv~fspdg~~lasgs~D-------g~v~iWd~~~~~~~~~~--~~h~~~v  192 (420)
T 4gga_A          125 NSVYLWSASSGDILQLLQMEQPGE--YI-SSVAWIKEGNYLAVGTSS-------AEVQLWDVQQQKRLRNM--TSHSARV  192 (420)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTC--CE-EEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEE--CCCSSCE
T ss_pred             CEEEEEECCCCCEEEEEEecCCCC--cE-EEEEECCCCCEEEEEECC-------CeEEEEEcCCCcEEEEE--eCCCCce
Confidence            468889999988766544333211  11 122222 56677777643       36899999887543221  1111122


Q ss_pred             eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      .....++.+.+.|+.+      ..+..+|..+..
T Consensus       193 ~~~s~~~~~l~sgs~d------~~i~~~d~~~~~  220 (420)
T 4gga_A          193 GSLSWNSYILSSGSRS------GHIHHHDVRVAE  220 (420)
T ss_dssp             EEEEEETTEEEEEETT------SEEEEEETTSSS
T ss_pred             EEEeeCCCEEEEEeCC------CceeEeeecccc
Confidence            2233456666666544      347777776543

>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}

Probab=89.10  E-value=7.2  Score=30.86  Aligned_cols=149  Identities=11%  Similarity=0.153  Sum_probs=79.2

Q ss_pred             EEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--E-EeC----CCCCCCceeeeeEE--ECCEEEEEcCcCCCCCCC
Q 018336          132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--W-TRG----KNMPDNRSFFAAGE--LNGRVIIAGGHDENKTAL  202 (358)
Q Consensus       132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W-~~~----~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~  202 (358)
                      +++..++.+|++-|         +.+|+++...-.  . +.+    +.+|.   ...+|.  .++++|++-|        
T Consensus        10 A~~~~~g~~~fFkg---------~~~w~~~~~~~~~gyP~~I~~~w~glP~---~iDAa~~~~~g~~yfFkg--------   69 (196)
T 3c7x_A           10 TVAMLRGEMFVFKE---------RWFWRVRNNQVMDGYPMPIGQFWRGLPA---SINTAYERKDGKFVFFKG--------   69 (196)
T ss_dssp             EEEEETTEEEEEET---------TEEEEEETTEECTTCSEEHHHHSTTCCS---SCCEEEECTTSCEEEEET--------
T ss_pred             EEEEcCCEEEEEEC---------CEEEEEECCccCCCCceEhhHhccCCCC---CccEEEEeCCCcEEEecC--------
Confidence            56678999999977         368888643100  0 111    23343   222232  4678888854        


Q ss_pred             CeEEEEECCCCce---EecC----CCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccc
Q 018336          203 SSAWAYDLIKDEW---TELA----RMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWK  273 (358)
Q Consensus       203 ~~~~~yd~~t~~W---~~~~----~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~  273 (358)
                      +..+.|+..+...   +.+.    .+|.... -++...  ++++|++-|.          ..++||..+++-.  ..-| 
T Consensus        70 ~~yw~~~~~~~~~gyPk~I~~~~~glP~~~I-DAA~~~~~~g~~yfFkG~----------~yw~yd~~~~~v~--~gyP-  135 (196)
T 3c7x_A           70 DKHWVFDEASLEPGYPKHIKELGRGLPTDKI-DAALFWMPNGKTYFFRGN----------KYYRFNEELRAVD--SEYP-  135 (196)
T ss_dssp             TEEEEEETTEECTTCSEEGGGTCBSCCSSCC-SEEEEETTTTEEEEEETT----------EEEEEETTTTEEC--TTCS-
T ss_pred             CEEEEEeCCcccCCCCeEhhhcCCCCCCCcc-cEEEEEccCCEEEEEECC----------EEEEEeCCccccc--CCCC-
Confidence            3578887542110   1222    2332222 123333  6899999764          3478998775321  1111 


Q ss_pred             cCCCCCceeeeeecCccCceeccccceeeceEEEEeCC-eEEEECCCCCCCCceEEEEECCCCc
Q 018336          274 LSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGG-CTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       274 ~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~-~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                           +.       +.  .|..+|..  ..++....++ ++|++-|      +..|+||..+++
T Consensus       136 -----k~-------i~--~~~gip~~--idaAf~~~~~~~~YfFkg------~~y~r~d~~~~~  177 (196)
T 3c7x_A          136 -----KN-------IK--VWEGIPES--PRGSFMGSDEVFTYFYKG------NKYWKFNNQKLK  177 (196)
T ss_dssp             -----EE-------GG--GSBTCCSS--CSEEEECTTSSEEEEEET------TEEEEEETTTTE
T ss_pred             -----cc-------HH--HCCCcCCC--cceeEEecCCCEEEEEEC------CEEEEEECCcce
Confidence                 10       01  24444432  2233333344 9999988      489999998764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=89.08  E-value=6.1  Score=37.97  Aligned_cols=104  Identities=8%  Similarity=0.045  Sum_probs=57.8

Q ss_pred             cceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc---eEecCCCccCcCceeE
Q 018336          154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE---WTELARMTQERDECEA  230 (358)
Q Consensus       154 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~~~~~p~~~~~~~~  230 (358)
                      ..+++++|..+..++.+..-.......  +..++.+|+....+   .....++.+|..+..   |+.+-+..........
T Consensus       251 ~~~l~~~~~~~~~~~~l~~~~~~~~~~--~~~~g~l~~~s~~~---~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~  325 (695)
T 2bkl_A          251 ENDVYWKRPGEKDFRLLVKGVGAKYEV--HAWKDRFYVLTDEG---APRQRVFEVDPAKPARASWKEIVPEDSSASLLSV  325 (695)
T ss_dssp             EEEEEEECTTCSSCEEEEECSSCCEEE--EEETTEEEEEECTT---CTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEE
T ss_pred             ceEEEEEcCCCCceEEeecCCCceEEE--EecCCcEEEEECCC---CCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEE
Confidence            457888887777787765322222221  22455566654322   123679999987754   8776532211111223


Q ss_pred             EEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEc
Q 018336          231 VVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRA  268 (358)
Q Consensus       231 ~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~  268 (358)
                      ...++++++......      ...++.+|+..+.-..+
T Consensus       326 ~~~~~~lv~~~~~dg------~~~l~~~~~~g~~~~~l  357 (695)
T 2bkl_A          326 SIVGGHLSLEYLKDA------TSEVRVATLKGKPVRTV  357 (695)
T ss_dssp             EEETTEEEEEEEETT------EEEEEEEETTCCEEEEC
T ss_pred             EEECCEEEEEEEECC------EEEEEEEeCCCCeeEEe
Confidence            445888887764431      44678888765433333

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=88.90  E-value=9.4  Score=35.94  Aligned_cols=117  Identities=19%  Similarity=0.197  Sum_probs=67.2

Q ss_pred             EEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCC---c---eeeeeEEECCEEEEEcCcCCCCCCCCe
Q 018336          133 VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDN---R---SFFAAGELNGRVIIAGGHDENKTALSS  204 (358)
Q Consensus       133 ~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~---~---~~~~~~~~~~~iyv~GG~~~~~~~~~~  204 (358)
                      .++.++.||+....        ..++.+|..|.+  |+.-...+..   .   ...+.++.++.+|+...       -..
T Consensus        64 P~v~~g~vyv~~~~--------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~  128 (582)
T 1flg_A           64 AIVSDGVIYVTASY--------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DAS  128 (582)
T ss_dssp             CEEETTEEEEEETT--------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTE
T ss_pred             cEEECCEEEEEcCC--------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCE
Confidence            35679999998752        248999988764  8764332211   1   12344567899988631       246


Q ss_pred             EEEEECCCCc--eEecCCCccCc--CceeEEEECC------EEEEEeCcccCCCCceeeeeEEEECCCCc--eEE
Q 018336          205 AWAYDLIKDE--WTELARMTQER--DECEAVVIGS------EFWVVSGYKTERQGIFDESAESYQLGTGE--WKR  267 (358)
Q Consensus       205 ~~~yd~~t~~--W~~~~~~p~~~--~~~~~~~~~~------~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~  267 (358)
                      ++++|.+|++  |+.-..-+...  ...+.++.++      .+|+-......   .....+++||..+++  |+.
T Consensus       129 l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~---~~~g~v~alD~~tG~~~W~~  200 (582)
T 1flg_A          129 VVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEF---GVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             EEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGG---CCBCEEEEECTTTCCEEEEE
T ss_pred             EEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEecccccc---CCCCEEEEEECCCCCEEeec
Confidence            9999998774  87532221111  1122345566      66553211100   124578999998875  864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=88.81  E-value=17  Score=34.87  Aligned_cols=147  Identities=12%  Similarity=0.046  Sum_probs=79.7

Q ss_pred             ceEEEEeCCC------C--CeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCC---cEEeC
Q 018336          102 YGVTVFDPVS------L--TWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTR---RWTRG  170 (358)
Q Consensus       102 ~~~~~~d~~~------~--~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~---~W~~~  170 (358)
                      ..++.+|..+      .  .+..+.....     ........-++.||+.+..+.    ....++++|..+.   .|+.+
T Consensus       259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~s~dg~~l~~~s~~~~----~~~~l~~~d~~~~~~~~~~~l  329 (710)
T 2xdw_A          259 NRLWYCDLQQESNGITGILKWVKLIDNFE-----GEYDYVTNEGTVFTFKTNRHS----PNYRLINIDFTDPEESKWKVL  329 (710)
T ss_dssp             CEEEEEEGGGSSSSSCSSCCCEEEECSSS-----SCEEEEEEETTEEEEEECTTC----TTCEEEEEETTSCCGGGCEEE
T ss_pred             cEEEEEECcccccccCCccceEEeeCCCC-----cEEEEEeccCCEEEEEECCCC----CCCEEEEEeCCCCCcccceec
Confidence            4788888865      3  5666644222     112233345778888875432    2357999998875   47776


Q ss_pred             CCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCc-eEecCCCccCcCceeEEEE--CC-EEEEE-eCcc
Q 018336          171 KNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDE-WTELARMTQERDECEAVVI--GS-EFWVV-SGYK  244 (358)
Q Consensus       171 ~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~p~~~~~~~~~~~--~~-~lyv~-gG~~  244 (358)
                      .+-.....-...+.. ++.+++....+.    ...++++|+.+++ .+.+. .+  ......+..  ++ .+++. .+..
T Consensus       330 ~~~~~~~~~~~~~~~~~~~lv~~~~~~g----~~~l~~~~~~~g~~~~~l~-~~--~~~v~~~~~s~d~~~l~~~~ss~~  402 (710)
T 2xdw_A          330 VPEHEKDVLEWVACVRSNFLVLCYLHDV----KNTLQLHDLATGALLKIFP-LE--VGSVVGYSGQKKDTEIFYQFTSFL  402 (710)
T ss_dssp             ECCCSSCEEEEEEEETTTEEEEEEEETT----EEEEEEEETTTCCEEEEEC-CC--SSEEEEEECCTTCSEEEEEEECSS
T ss_pred             cCCCCCCeEEEEEEEcCCEEEEEEEECC----EEEEEEEECCCCCEEEecC-CC--CceEEEEecCCCCCEEEEEEeCCC
Confidence            432211122223334 677777654332    3568999986654 34443 22  111122222  34 34333 2222


Q ss_pred             cCCCCceeeeeEEEECCCCc--eEEcCC
Q 018336          245 TERQGIFDESAESYQLGTGE--WKRAEN  270 (358)
Q Consensus       245 ~~~~~~~~~~i~~yd~~~~~--W~~~~~  270 (358)
                        .    ...++.||+.+++  .+.+..
T Consensus       403 --~----P~~i~~~d~~tg~~~~~~l~~  424 (710)
T 2xdw_A          403 --S----PGIIYHCDLTKEELEPRVFRE  424 (710)
T ss_dssp             --C----CCEEEEEETTSSSCCCEEEEE
T ss_pred             --C----CCEEEEEECCCCccceEEeee
Confidence              2    4578999999877  665543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=88.62  E-value=10  Score=32.13  Aligned_cols=142  Identities=15%  Similarity=0.037  Sum_probs=73.0

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCC-----C---------CCceeEEEEE--CCEEEEEcCcCCCCCCCcceeEEEECCCC
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPA-----G---------LPLFCQVASS--QGKLVVMGGWDPASYSPVSHVFVYDFTTR  165 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~-----~---------~~~~~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~  165 (358)
                      ..+..||+..+.+..+........     +         .....+++..  ++.||+....        ..+.++|+.++
T Consensus        40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~--------~~i~~~d~~~g  111 (322)
T 2fp8_A           40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY--------YHLSVVGSEGG  111 (322)
T ss_dssp             SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT--------TEEEEECTTCE
T ss_pred             CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC--------CCEEEEeCCCC
Confidence            368889998877665432110000     0         0012345444  5789988431        24888998876


Q ss_pred             cEEeCCCCCC--Cc-eeeeeEE-E-CCEEEEEcCcCCC-----------CCCCCeEEEEECCCCceEecC-CCccCcCce
Q 018336          166 RWTRGKNMPD--NR-SFFAAGE-L-NGRVIIAGGHDEN-----------KTALSSAWAYDLIKDEWTELA-RMTQERDEC  228 (358)
Q Consensus       166 ~W~~~~~~~~--~~-~~~~~~~-~-~~~iyv~GG~~~~-----------~~~~~~~~~yd~~t~~W~~~~-~~p~~~~~~  228 (358)
                      ..+.+.....  +. ....++. - ++.+|+.-.....           ......+++||+.++..+.+. .+.   ...
T Consensus       112 ~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~---~p~  188 (322)
T 2fp8_A          112 HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH---VPG  188 (322)
T ss_dssp             ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES---CCC
T ss_pred             EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCc---cCc
Confidence            5554432111  11 1122233 3 5789987432110           011256999999887765442 111   111


Q ss_pred             eEEEE-CC-EEEEEeCcccCCCCceeeeeEEEECCC
Q 018336          229 EAVVI-GS-EFWVVSGYKTERQGIFDESAESYQLGT  262 (358)
Q Consensus       229 ~~~~~-~~-~lyv~gG~~~~~~~~~~~~i~~yd~~~  262 (358)
                      .++.- ++ .||+....        ...|.+||+..
T Consensus       189 gia~~~dg~~lyv~d~~--------~~~I~~~~~~~  216 (322)
T 2fp8_A          189 GAEVSADSSFVLVAEFL--------SHQIVKYWLEG  216 (322)
T ss_dssp             EEEECTTSSEEEEEEGG--------GTEEEEEESSS
T ss_pred             ceEECCCCCEEEEEeCC--------CCeEEEEECCC
Confidence            23322 34 48887532        34678898875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=88.53  E-value=0.56  Score=41.46  Aligned_cols=128  Identities=11%  Similarity=0.099  Sum_probs=49.8

Q ss_pred             eEEEEeCCCCC--eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCC--cEEeCCCCCCCce
Q 018336          103 GVTVFDPVSLT--WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTR--RWTRGKNMPDNRS  178 (358)
Q Consensus       103 ~~~~~d~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~  178 (358)
                      .+.++|..+++  |+.-.   .+.     ....+..++.+|+.+..+       ..++.+|..+.  .|+.-...+.. .
T Consensus        20 ~v~a~d~~tG~~~W~~~~---~~~-----~s~p~~~~g~~~v~~s~d-------g~l~a~d~~tG~~~w~~~~~~~~~-~   83 (369)
T 2hz6_A           20 SLHAVSKRTGSIKWTLKE---DPV-----LQVPTHVEEPAFLPDPND-------GSLYTLGSKNNEGLTKLPFTIPEL-V   83 (369)
T ss_dssp             EEEEEETTTCCEEEEEEC---CCS-----CCCC-----CCEEECTTT-------CCEEEC-----CCSEECSCCHHHH-H
T ss_pred             EEEEEECCCCCEEEEecC---CCc-----eecceEcCCCEEEEeCCC-------CEEEEEECCCCceeeeeeccCccc-c
Confidence            68899988775  75543   111     112233456677776432       36899998664  46532211100 0


Q ss_pred             eeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCc--eEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeee
Q 018336          179 FFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDE--WTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESA  255 (358)
Q Consensus       179 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i  255 (358)
                      ..+.+. .++.+|+ |+.      -..++++|..+++  |+.-....     ...+..++.+|+.+ .        ...+
T Consensus        84 ~~sp~~~~~~~v~~-g~~------dg~v~a~D~~tG~~~w~~~~~~~-----~~~~p~~~~v~~~~-~--------dg~v  142 (369)
T 2hz6_A           84 QASPCRSSDGILYM-GKK------QDIWYVIDLLTGEKQQTLSSAFA-----DSLSPSTSLLYLGR-T--------EYTI  142 (369)
T ss_dssp             TTCSCC-----CCC-CEE------EEEEEEECCC---------------------------EEEEE-E--------EEEE
T ss_pred             ccCceEecCCEEEE-EeC------CCEEEEEECCCCcEEEEecCCCc-----ccccccCCEEEEEe-c--------CCEE
Confidence            011111 3444443 321      1358889987654  65322111     01112445555542 2        2467


Q ss_pred             EEEECCCCc--eEE
Q 018336          256 ESYQLGTGE--WKR  267 (358)
Q Consensus       256 ~~yd~~~~~--W~~  267 (358)
                      .+||+.+++  |+.
T Consensus       143 ~a~d~~tG~~~W~~  156 (369)
T 2hz6_A          143 TMYDTKTRELRWNA  156 (369)
T ss_dssp             ECCCSSSSSCCCEE
T ss_pred             EEEECCCCCEEEeE
Confidence            889988764  764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=88.21  E-value=20  Score=34.81  Aligned_cols=136  Identities=13%  Similarity=0.225  Sum_probs=74.1

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCC----CCCCCce
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGK----NMPDNRS  178 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~----~~~~~~~  178 (358)
                      .+..||+.+.++.....  ...   ..-..+...++.|++...         +.+++||+.+++.+...    .++....
T Consensus        83 Gl~~yd~~~~~f~~~~~--~~~---~~i~~i~~~~g~lWigt~---------~Gl~~~~~~~~~~~~~~~~~~~l~~~~i  148 (758)
T 3ott_A           83 GILVYNYRADRYEQPET--DFP---TDVRTMALQGDTLWLGAL---------NGLYTYQLQSRKLTSFDTRRNGLPNNTI  148 (758)
T ss_dssp             EEEEEETTTTEECCCSC--CCC---SCEEEEEEETTEEEEEET---------TEEEEEETTTCCEEEECHHHHCCSCSCE
T ss_pred             CeEEEeCCCCEEECccc--CCC---ceEEEEEecCCcEEEEcC---------CcceeEeCCCCeEEEeccCCCCcCCCeE
Confidence            57899999987754111  111   111223345788887532         26899999998887652    1222111


Q ss_pred             eeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCcc-CcCc---eeEEEE-CC-EEEEEeCcccCCCCce
Q 018336          179 FFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQ-ERDE---CEAVVI-GS-EFWVVSGYKTERQGIF  251 (358)
Q Consensus       179 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~-~~~~---~~~~~~-~~-~lyv~gG~~~~~~~~~  251 (358)
                       .+.... ++.|++. . .      .-+..||+.+++++.+..... ....   .++..- ++ .|++-.          
T Consensus       149 -~~i~~d~~g~lWig-t-~------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt----------  209 (758)
T 3ott_A          149 -YSIIRTKDNQIYVG-T-Y------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT----------  209 (758)
T ss_dssp             -EEEEECTTCCEEEE-E-T------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE----------
T ss_pred             -EEEEEcCCCCEEEE-e-C------CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE----------
Confidence             122222 5677774 1 1      248899999988876542111 1111   122222 23 466532          


Q ss_pred             eeeeEEEECCCCceEEcCCc
Q 018336          252 DESAESYQLGTGEWKRAENA  271 (358)
Q Consensus       252 ~~~i~~yd~~~~~W~~~~~~  271 (358)
                      ...+..||+.++++.....+
T Consensus       210 ~~Gl~~~~~~~~~~~~~~~l  229 (758)
T 3ott_A          210 EGYLFQYFPSTGQIKQTEAF  229 (758)
T ss_dssp             EEEEEEEETTTTEEEEEEEE
T ss_pred             CCCCeEEcCCCCeEEeccCC
Confidence            12467899999888765433

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=87.75  E-value=3.1  Score=35.36  Aligned_cols=113  Identities=8%  Similarity=0.115  Sum_probs=58.7

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCce-eeeeEEE---CCEEEEEcCcCCCCCCCCeEEEEECCC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRS-FFAAGEL---NGRVIIAGGHDENKTALSSAWAYDLIK  212 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~-~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~t  212 (358)
                      ++..++.|+.+       ..+.+||..+.....+..+..... -.+++..   ++.+++.|+.+.      .+.++|..+
T Consensus        24 ~g~~lasgs~D-------~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~------~v~iWd~~~   90 (316)
T 3bg1_A           24 YGTRLATCSSD-------RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR------KVIIWREEN   90 (316)
T ss_dssp             GGCEEEEEETT-------TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS------CEEEECCSS
T ss_pred             CCCEEEEEeCC-------CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC------EEEEEECCC
Confidence            45666666643       368888887765432222211111 1122221   255666666543      488999988


Q ss_pred             CceEecCCCccCcCceeEEEE--C--CEEEEEeCcccCCCCceeeeeEEEECCCC-ceEEcCC
Q 018336          213 DEWTELARMTQERDECEAVVI--G--SEFWVVSGYKTERQGIFDESAESYQLGTG-EWKRAEN  270 (358)
Q Consensus       213 ~~W~~~~~~p~~~~~~~~~~~--~--~~lyv~gG~~~~~~~~~~~~i~~yd~~~~-~W~~~~~  270 (358)
                      +.|..+..+.........+.+  +  +.+++.|+.+        ..+..||..++ .|.....
T Consensus        91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D--------~~i~lwd~~~~~~~~~~~~  145 (316)
T 3bg1_A           91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD--------GAISLLTYTGEGQWEVKKI  145 (316)
T ss_dssp             SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS--------SCEEEEEECSSSCEEECCB
T ss_pred             CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC--------CCEEEEecCCCCCcceeee
Confidence            877654333222222222332  2  5567777653        24677887765 5754443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=87.66  E-value=13  Score=32.19  Aligned_cols=173  Identities=10%  Similarity=-0.051  Sum_probs=92.5

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE--ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCC--CCCCCce
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS--SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGK--NMPDNRS  178 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~  178 (358)
                      .+..+++....-..+.......   +.  +++.  .++.||+.-..       .+.++++++....-+.+.  .+..|  
T Consensus        96 ~I~r~~~~g~~~~~~~~~~~~~---p~--glavd~~~g~ly~~d~~-------~~~I~~~~~dG~~~~~l~~~~l~~P--  161 (349)
T 3v64_C           96 RILRANLNGSNVEEVVSTGLES---PG--GLAVDWVHDKLYWTDSG-------TSRIEVANLDGAHRKVLLWQSLEKP--  161 (349)
T ss_dssp             EEEEEETTSCSCEEEECSSCSC---CC--EEEEETTTTEEEEEETT-------TTEEEEEETTSCSCEEEECTTCSCE--
T ss_pred             ceEEEecCCCCceEEEeCCCCC---cc--EEEEecCCCeEEEEcCC-------CCeEEEEcCCCCceEEEEeCCCCCc--
Confidence            5677777766544432211110   11  3444  47899998642       357899998765433332  22222  


Q ss_pred             eeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCce-eEEE--ECCEEEEEeCcccCCCCceee
Q 018336          179 FFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDEC-EAVV--IGSEFWVVSGYKTERQGIFDE  253 (358)
Q Consensus       179 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~-~~~~--~~~~lyv~gG~~~~~~~~~~~  253 (358)
                       .+.++.  ++.||+.--..     ...++++++....-+.+..  ...... ++++  .+++||+.-..        ..
T Consensus       162 -~~iavdp~~g~ly~td~~~-----~~~I~r~~~dG~~~~~~~~--~~~~~PnGla~d~~~~~lY~aD~~--------~~  225 (349)
T 3v64_C          162 -RAIALHPMEGTIYWTDWGN-----TPRIEASSMDGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAK--------HH  225 (349)
T ss_dssp             -EEEEEETTTTEEEEEECSS-----SCEEEEEETTSCSCEESCC--SSCSCEEEEEEETTTTEEEEEETT--------TT
T ss_pred             -ceEEEecCcCeEEEeccCC-----CCEEEEEeCCCCCcEEEEE--CCCCCcceEEEeCCCCEEEEEECC--------CC
Confidence             233333  68899984211     3679999987544343321  111222 3333  36789998632        34


Q ss_pred             eeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECC
Q 018336          254 SAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGR  333 (358)
Q Consensus       254 ~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~  333 (358)
                      .|+++|+....-..+....    .                       ....+++..++.||+..-..    ..|.++|..
T Consensus       226 ~I~~~~~dG~~~~~~~~~~----~-----------------------~~P~giav~~~~ly~td~~~----~~V~~~~~~  274 (349)
T 3v64_C          226 VIERANLDGSHRKAVISQG----L-----------------------PHPFAITVFEDSLYWTDWHT----KSINSANKF  274 (349)
T ss_dssp             EEEEEETTSCSCEEEECSS----C-----------------------SSEEEEEEETTEEEEEETTT----TEEEEEETT
T ss_pred             EEEEEeCCCCceEEEEeCC----C-----------------------CCceEEEEECCEEEEecCCC----CeEEEEEcc
Confidence            7888998753222221110    0                       11123455788999985433    577888754


Q ss_pred             CCc
Q 018336          334 NGK  336 (358)
Q Consensus       334 ~~~  336 (358)
                      +++
T Consensus       275 ~G~  277 (349)
T 3v64_C          275 TGK  277 (349)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=87.51  E-value=14  Score=32.47  Aligned_cols=132  Identities=5%  Similarity=-0.087  Sum_probs=73.7

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      .+..+|+.......+.....      ...+++..  ++.||+..-.       ...++++++.....+.+....... -.
T Consensus        97 ~I~~i~~~~~~~~~~~~~~~------~~~gl~~d~~~~~ly~~D~~-------~~~I~r~~~~g~~~~~~~~~~~~~-p~  162 (386)
T 3v65_B           97 DIRQVLPHRSEYTLLLNNLE------NAIALDFHHRRELVFWSDVT-------LDRILRANLNGSNVEEVVSTGLES-PG  162 (386)
T ss_dssp             CEEEECTTSCCCEEEECSCS------CEEEEEEETTTTEEEEEETT-------TTEEEEEETTSCCEEEEECSSCSC-CC
T ss_pred             cceeeccCCCcEEEEecCCC------ccEEEEEecCCCeEEEEeCC-------CCcEEEEecCCCCcEEEEeCCCCC-cc
Confidence            57778887766655433211      12234433  6889988542       357999999887665542211111 12


Q ss_pred             eeEE--ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecC--CCccCcCceeEEEE--CCEEEEEeCcccCCCCceeee
Q 018336          181 AAGE--LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA--RMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDES  254 (358)
Q Consensus       181 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~  254 (358)
                      +.++  .++.||+.-..      ...++++++....-+.+.  .+..+   ..+++-  ++.||+..-..       ...
T Consensus       163 glavd~~~g~lY~~d~~------~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~~-------~~~  226 (386)
T 3v65_B          163 GLAVDWVHDKLYWTDSG------TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN-------TPR  226 (386)
T ss_dssp             CEEEETTTTEEEEEETT------TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECSS-------SCE
T ss_pred             EEEEEeCCCeEEEEcCC------CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccCC-------CCE
Confidence            3333  37899998432      346888888654433322  22212   223333  67899885321       247


Q ss_pred             eEEEECCCCc
Q 018336          255 AESYQLGTGE  264 (358)
Q Consensus       255 i~~yd~~~~~  264 (358)
                      |+++++....
T Consensus       227 I~r~~~dG~~  236 (386)
T 3v65_B          227 IEASSMDGSG  236 (386)
T ss_dssp             EEEEETTSCS
T ss_pred             EEEEeCCCCC
Confidence            8899987543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=87.35  E-value=4.8  Score=34.44  Aligned_cols=72  Identities=10%  Similarity=0.217  Sum_probs=37.0

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCC--CcEEeCCCCCCCceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTT--RRWTRGKNMPDNRSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIK  212 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t  212 (358)
                      ++..++.|+.+       ..+.+||..+  ..++.+..+.........+..  ++.+++.|+.+.      .+.++|..+
T Consensus       118 ~g~~las~s~D-------~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~------~i~iW~~~~  184 (330)
T 2hes_X          118 DGYYLATCSRD-------KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD------TVRIWKDYD  184 (330)
T ss_dssp             TSCEEEEEETT-------SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS------CEEEEEEET
T ss_pred             CCCEEEEEeCC-------CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC------eEEEEECCC
Confidence            45666666543       3688888743  233332222211111111222  456667766543      488888877


Q ss_pred             CceEecCCC
Q 018336          213 DEWTELARM  221 (358)
Q Consensus       213 ~~W~~~~~~  221 (358)
                      +.|+.+..+
T Consensus       185 ~~~~~~~~~  193 (330)
T 2hes_X          185 DDWECVAVL  193 (330)
T ss_dssp             TEEEEEEEE
T ss_pred             CCeeEEEEc
Confidence            777655433

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=87.30  E-value=19  Score=33.69  Aligned_cols=104  Identities=14%  Similarity=0.178  Sum_probs=55.5

Q ss_pred             cceeEEEECCCCcEEeCCCCCCCceeeeeEEE-CC-EEEEEcCcCCCCCCCCeEEEEECCCCceEe---c-CCCccCcCc
Q 018336          154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-NG-RVIIAGGHDENKTALSSAWAYDLIKDEWTE---L-ARMTQERDE  227 (358)
Q Consensus       154 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~---~-~~~p~~~~~  227 (358)
                      ...+++.|..+.....+..++..+.-|....- ++ .+|+...      ..+.+.++|..+++-..   + ...|.+..+
T Consensus       319 ~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g  392 (567)
T 1qks_A          319 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG  392 (567)
T ss_dssp             TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred             CCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC------CCCeEEEEECCCCcEEEEEeccCcCCCCccc
Confidence            34788899877655444444445555544432 33 4555532      23569999999886432   2 233443233


Q ss_pred             eeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCc-----eEEcCCc
Q 018336          228 CEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGE-----WKRAENA  271 (358)
Q Consensus       228 ~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~-----W~~~~~~  271 (358)
                      .. ...  .+.+|+.+-..       ...|.++|..+..     |+.+..+
T Consensus       393 ~~-~~~p~~g~v~~t~~~g-------~~~Vsvid~~~~~~~~~~~kvv~~i  435 (567)
T 1qks_A          393 AN-FVHPTFGPVWATSHMG-------DDSVALIGTDPEGHPDNAWKILDSF  435 (567)
T ss_dssp             EE-EEETTTEEEEEEEBSS-------SSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred             ee-eECCCCCcEEEeCCCC-------CCeEEEecCCCCCCccccCEEEEEE
Confidence            22 223  25577765221       2246667766532     7665543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=87.19  E-value=15  Score=32.62  Aligned_cols=109  Identities=9%  Similarity=-0.014  Sum_probs=60.5

Q ss_pred             ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE--ECCEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          136 SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE--LNGRVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       136 ~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                      -++.||+....       ...+.++|+.+++-..+.... .. .+ .+.  -++.+|+......     ..++.++..++
T Consensus       140 ~~g~lyv~d~~-------~~~I~~id~~~g~~~~~~~~~-~~-~~-ia~~~~g~~l~~~d~~~~-----~~I~~~d~~~~  204 (409)
T 3hrp_A          140 GNNTVLAYQRD-------DPRVRLISVDDNKVTTVHPGF-KG-GK-PAVTKDKQRVYSIGWEGT-----HTVYVYMKASG  204 (409)
T ss_dssp             STTEEEEEETT-------TTEEEEEETTTTEEEEEEETC-CB-CB-CEECTTSSEEEEEBSSTT-----CEEEEEEGGGT
T ss_pred             CCCCEEEEecC-------CCcEEEEECCCCEEEEeeccC-CC-Cc-eeEecCCCcEEEEecCCC-----ceEEEEEcCCC
Confidence            36789998752       347999999987766543221 11 12 222  2456777743211     26899998754


Q ss_pred             c-eEecCCCc--cCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEc
Q 018336          214 E-WTELARMT--QERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRA  268 (358)
Q Consensus       214 ~-W~~~~~~p--~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~  268 (358)
                      . ...+....  .......+++.  ++.||+...         ...+++||+.+.....+
T Consensus       205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~---------~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS---------NKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT---------TCEEEEEETTTCCEEEE
T ss_pred             ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC---------CCcEEEEECCCCCEEEE
Confidence            3 23331111  11111223332  678999432         23688999998875554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=87.05  E-value=8  Score=34.67  Aligned_cols=150  Identities=10%  Similarity=0.089  Sum_probs=73.3

Q ss_pred             CEEEEEcCcCCCCCCCcceeEEEECC--CCcEEe-CCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          138 GKLVVMGGWDPASYSPVSHVFVYDFT--TRRWTR-GKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       138 ~~lyv~Gg~~~~~~~~~~~~~~yd~~--t~~W~~-~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                      ..|++.|+.+       ..+.+||..  +..... +.....+..-.+++. -++..+++|+.+      ..++.++..+.
T Consensus       115 ~~l~~~~~~d-------g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~------g~v~~~~~~~~  181 (450)
T 2vdu_B          115 SRLIACADSD-------KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF------GDVYSIDINSI  181 (450)
T ss_dssp             SEEEEEEGGG-------TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT------SEEEEEETTSC
T ss_pred             CEEEEEECCC-------CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCC------CcEEEEecCCc
Confidence            3445777643       368888887  443222 111011111112222 245555665432      45888888765


Q ss_pred             ceEe--cCCCccCcCce-eE-EEEC---CEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeee
Q 018336          214 EWTE--LARMTQERDEC-EA-VVIG---SEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGR  286 (358)
Q Consensus       214 ~W~~--~~~~p~~~~~~-~~-~~~~---~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~  286 (358)
                      .-..  ...+....... .+ ..-+   +++++.|+.+        ..|.+||+.+++-...- +     ..+..     
T Consensus       182 ~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d--------~~i~vwd~~~~~~~~~~-~-----~~h~~-----  242 (450)
T 2vdu_B          182 PEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD--------EHIKISHYPQCFIVDKW-L-----FGHKH-----  242 (450)
T ss_dssp             CCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT--------SCEEEEEESCTTCEEEE-C-----CCCSS-----
T ss_pred             ccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC--------CcEEEEECCCCceeeee-e-----cCCCC-----
Confidence            4332  11121111111 22 2345   7777777653        35678888766432210 0     00100     


Q ss_pred             cCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceE
Q 018336          287 EGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFR  338 (358)
Q Consensus       287 d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~  338 (358)
                                    ...+..+. ++++++.|+.+    ..|.+||..+++..
T Consensus       243 --------------~v~~~~~s-d~~~l~s~~~d----~~v~vwd~~~~~~~  275 (450)
T 2vdu_B          243 --------------FVSSICCG-KDYLLLSAGGD----DKIFAWDWKTGKNL  275 (450)
T ss_dssp             --------------CEEEEEEC-STTEEEEEESS----SEEEEEETTTCCEE
T ss_pred             --------------ceEEEEEC-CCCEEEEEeCC----CeEEEEECCCCcEe
Confidence                          00111233 77888888754    68999999887643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=87.05  E-value=14  Score=31.91  Aligned_cols=91  Identities=14%  Similarity=0.153  Sum_probs=45.0

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE----CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCC
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS----QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDN  176 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~----~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~  176 (358)
                      ..+..||..+.+-......+..     .. .+...    ++.+++.|+.+       ..+.+||..+.+-.. +.....+
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~-------~~v~~~d~~~~~~~~~~~~~~~~  188 (408)
T 4a11_B          122 KTLKVWDTNTLQTADVFNFEET-----VY-SHHMSPVSTKHCLVAVGTRG-------PKVQLCDLKSGSCSHILQGHRQE  188 (408)
T ss_dssp             SEEEEEETTTTEEEEEEECSSC-----EE-EEEECSSCSSCCEEEEEESS-------SSEEEEESSSSCCCEEECCCCSC
T ss_pred             CeEEEeeCCCCccceeccCCCc-----ee-eeEeecCCCCCcEEEEEcCC-------CeEEEEeCCCcceeeeecCCCCc
Confidence            3678888887765444332221     11 22221    33366666532       368999987654321 1111111


Q ss_pred             ceeeeeEEE-CC-EEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          177 RSFFAAGEL-NG-RVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       177 ~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                        -.+.+.. ++ .+++.|+.+.      .+.+||..+.
T Consensus       189 --v~~~~~~~~~~~ll~~~~~dg------~i~i~d~~~~  219 (408)
T 4a11_B          189 --ILAVSWSPRYDYILATASADS------RVKLWDVRRA  219 (408)
T ss_dssp             --EEEEEECSSCTTEEEEEETTS------CEEEEETTCS
T ss_pred             --EEEEEECCCCCcEEEEEcCCC------cEEEEECCCC
Confidence              1122222 33 3677766443      4888988654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=86.93  E-value=14  Score=31.80  Aligned_cols=105  Identities=15%  Similarity=0.227  Sum_probs=52.9

Q ss_pred             CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceE
Q 018336          138 GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWT  216 (358)
Q Consensus       138 ~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  216 (358)
                      +.+++.|+.+       ..+.+||..+.+....-...... -.+.+. -++..++.|+.+.      .+.+||..++.-.
T Consensus       210 g~~l~sgs~D-------g~v~~wd~~~~~~~~~~~~h~~~-v~~v~~~p~~~~l~s~s~D~------~v~lwd~~~~~~~  275 (354)
T 2pbi_B          210 GNTFVSGGCD-------KKAMVWDMRSGQCVQAFETHESD-VNSVRYYPSGDAFASGSDDA------TCRLYDLRADREV  275 (354)
T ss_dssp             CCEEEEEETT-------SCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSEEEEEETTS------CEEEEETTTTEEE
T ss_pred             CCEEEEEeCC-------CeEEEEECCCCcEEEEecCCCCC-eEEEEEeCCCCEEEEEeCCC------eEEEEECCCCcEE
Confidence            3556666543       36888998877653321111111 111122 2566667766543      4889998876432


Q ss_pred             ecCCCccCcCceeEE--EECCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          217 ELARMTQERDECEAV--VIGSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       217 ~~~~~p~~~~~~~~~--~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      ..-...........+  ..++++.+.|+.+        ..+.+||..+++
T Consensus       276 ~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d--------~~i~vwd~~~~~  317 (354)
T 2pbi_B          276 AIYSKESIIFGASSVDFSLSGRLLFAGYND--------YTINVWDVLKGS  317 (354)
T ss_dssp             EEECCTTCCSCEEEEEECTTSSEEEEEETT--------SCEEEEETTTCS
T ss_pred             EEEcCCCcccceeEEEEeCCCCEEEEEECC--------CcEEEEECCCCc
Confidence            211111111122222  2356676666542        357889987654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=86.93  E-value=11  Score=32.49  Aligned_cols=74  Identities=8%  Similarity=0.166  Sum_probs=39.0

Q ss_pred             CC-EEEEEcCcCCCCCCCCeEEEEECCCCceEecCC---CccCcCceeEEEE--CCE-EEEEeCcccCCCCceeeeeEEE
Q 018336          186 NG-RVIIAGGHDENKTALSSAWAYDLIKDEWTELAR---MTQERDECEAVVI--GSE-FWVVSGYKTERQGIFDESAESY  258 (358)
Q Consensus       186 ~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~---~p~~~~~~~~~~~--~~~-lyv~gG~~~~~~~~~~~~i~~y  258 (358)
                      ++ .+|+.+..      ...+.+|+..+++++.+..   .+........+.+  +|+ ||+.....       .+.+.+|
T Consensus       221 dg~~l~v~~~~------~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~-------~~~i~v~  287 (361)
T 3scy_A          221 DGKFAYLINEI------GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK-------ADGVAIF  287 (361)
T ss_dssp             TSSEEEEEETT------TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS-------SCEEEEE
T ss_pred             CCCEEEEEcCC------CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC-------CCEEEEE
Confidence            44 57776421      2468899988877755442   2222222223333  565 66554220       1245555


Q ss_pred             EC--CCCceEEcCCcc
Q 018336          259 QL--GTGEWKRAENAW  272 (358)
Q Consensus       259 d~--~~~~W~~~~~~p  272 (358)
                      +.  .+++++.+...+
T Consensus       288 ~~~~~~g~~~~~~~~~  303 (361)
T 3scy_A          288 KVDETNGTLTKVGYQL  303 (361)
T ss_dssp             EECTTTCCEEEEEEEE
T ss_pred             EEcCCCCcEEEeeEec
Confidence            55  577777766553

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=86.85  E-value=12  Score=30.93  Aligned_cols=94  Identities=9%  Similarity=0.023  Sum_probs=44.0

Q ss_pred             ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          136 SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       136 ~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      .++..++.|+.+       ..+.+||..+..-........... .+++. -++..++.|+.+.      .+.+|+.....
T Consensus        27 ~~~~~l~s~~~d-------g~v~vw~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg------~i~~~~~~~~~   92 (313)
T 3odt_A           27 VDDSKVASVSRD-------GTVRLWSKDDQWLGTVVYTGQGFL-NSVCYDSEKELLLFGGKDT------MINGVPLFATS   92 (313)
T ss_dssp             EETTEEEEEETT-------SEEEEEEESSSEEEEEEEECSSCE-EEEEEETTTTEEEEEETTS------CEEEEETTCCT
T ss_pred             cCCCEEEEEEcC-------CcEEEEECCCCEEEEEeecCCccE-EEEEECCCCCEEEEecCCC------eEEEEEeeecC
Confidence            455555666532       368899987665433211111111 12222 2566666665443      47777775432


Q ss_pred             -eEecCCCccCcCceeEEEECCEEEEEeCc
Q 018336          215 -WTELARMTQERDECEAVVIGSEFWVVSGY  243 (358)
Q Consensus       215 -W~~~~~~p~~~~~~~~~~~~~~lyv~gG~  243 (358)
                       .+.+..+.........+..++.+++.|+.
T Consensus        93 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~  122 (313)
T 3odt_A           93 GEDPLYTLIGHQGNVCSLSFQDGVVISGSW  122 (313)
T ss_dssp             TSCC-CEECCCSSCEEEEEEETTEEEEEET
T ss_pred             CCCcccchhhcccCEEEEEecCCEEEEEeC
Confidence             22222222222222333446666666654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=86.79  E-value=6.5  Score=33.05  Aligned_cols=103  Identities=10%  Similarity=0.053  Sum_probs=50.1

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      ++.+.+.|+.+       ..+.+||..+..-.. +.....+ .......-++..++.|+.+      ..+.+||..++.-
T Consensus        24 ~~~~l~s~~~d-------g~v~lWd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~s~d------~~i~vwd~~~~~~   89 (304)
T 2ynn_A           24 TEPWVLTTLYS-------GRVELWNYETQVEVRSIQVTETP-VRAGKFIARKNWIIVGSDD------FRIRVFNYNTGEK   89 (304)
T ss_dssp             SSSEEEEEETT-------SEEEEEETTTTEEEEEEECCSSC-EEEEEEEGGGTEEEEEETT------SEEEEEETTTCCE
T ss_pred             CCCEEEEEcCC-------CcEEEEECCCCceeEEeeccCCc-EEEEEEeCCCCEEEEECCC------CEEEEEECCCCcE
Confidence            45555566543       368888887765322 1111111 1111112245566666543      3588999987643


Q ss_pred             EecCCCccCcCceeEEE--ECCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          216 TELARMTQERDECEAVV--IGSEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       216 ~~~~~~p~~~~~~~~~~--~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      ..  .+.........+.  -++++++.|+.+        ..+..||..++
T Consensus        90 ~~--~~~~h~~~v~~~~~~~~~~~l~sgs~D--------~~v~lWd~~~~  129 (304)
T 2ynn_A           90 VV--DFEAHPDYIRSIAVHPTKPYVLSGSDD--------LTVKLWNWENN  129 (304)
T ss_dssp             EE--EEECCSSCEEEEEECSSSSEEEEEETT--------SCEEEEEGGGT
T ss_pred             EE--EEeCCCCcEEEEEEcCCCCEEEEECCC--------CeEEEEECCCC
Confidence            21  1111111112222  245566666543        24677887654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=86.71  E-value=23  Score=33.96  Aligned_cols=147  Identities=11%  Similarity=0.061  Sum_probs=81.1

Q ss_pred             ceEEEEeCCCC--CeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCC---cEEeCCCCCCC
Q 018336          102 YGVTVFDPVSL--TWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTR---RWTRGKNMPDN  176 (358)
Q Consensus       102 ~~~~~~d~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~---~W~~~~~~~~~  176 (358)
                      ..++.+|..+.  .|..+.....     .........++.+|+....+.    ....++++|..+.   .|+.+.+-...
T Consensus       259 ~~i~~~d~~~~~~~~~~l~~~~~-----~~~~~~~~~g~~l~~~t~~~~----~~~~l~~~d~~~~~~~~~~~l~~~~~~  329 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQGDLD-----ADVSLVDNKGSTLYLLTNRDA----PNRRLVTVDAANPGPAHWRDLIPERQQ  329 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEECSSS-----SCEEEEEEETTEEEEEECTTC----TTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred             cEEEEEECCCCCCceEEEeCCCC-----ceEEEEeccCCEEEEEECCCC----CCCEEEEEeCCCCCccccEEEecCCCC
Confidence            47788887665  6766644222     112234455788988876432    2357999998764   37765332222


Q ss_pred             ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE--ECC-EEEEE-eCcccCCCCcee
Q 018336          177 RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV--IGS-EFWVV-SGYKTERQGIFD  252 (358)
Q Consensus       177 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~--~~~-~lyv~-gG~~~~~~~~~~  252 (358)
                      ..  .....++.|++..-.+    ....++++|...+..+.+. +|.... ...+.  -++ .+++. .+..  .    .
T Consensus       330 ~~--~~s~~g~~lv~~~~~~----g~~~l~~~d~~g~~~~~l~-~p~~~~-~~~~~~~~d~~~l~~~~ss~~--t----P  395 (693)
T 3iuj_A          330 VL--TVHSGSGYLFAEYMVD----ATARVEQFDYEGKRVREVA-LPGLGS-VSGFNGKHDDPALYFGFENYA--Q----P  395 (693)
T ss_dssp             CE--EEEEETTEEEEEEEET----TEEEEEEECTTSCEEEEEC-CSSSSE-EEECCCCTTCSCEEEEEECSS--S----C
T ss_pred             EE--EEEEECCEEEEEEEEC----CeeEEEEEECCCCeeEEee-cCCCce-EEeeecCCCCCEEEEEecCCC--C----C
Confidence            22  4444567776653322    1357899998866555543 332211 11111  133 34433 2221  1    4


Q ss_pred             eeeEEEECCCCceEEcCCc
Q 018336          253 ESAESYQLGTGEWKRAENA  271 (358)
Q Consensus       253 ~~i~~yd~~~~~W~~~~~~  271 (358)
                      ..++.||+.+++.+.+...
T Consensus       396 ~~l~~~d~~~g~~~~l~~~  414 (693)
T 3iuj_A          396 PTLYRFEPKSGAISLYRAS  414 (693)
T ss_dssp             CEEEEECTTTCCEEEEECC
T ss_pred             CEEEEEECCCCeEEEEEeC
Confidence            5789999999888777654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=86.67  E-value=20  Score=33.19  Aligned_cols=27  Identities=11%  Similarity=-0.047  Sum_probs=19.5

Q ss_pred             CCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336          310 GGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       310 ~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                      +++.++.++.+    ..+.+||..+.+-...
T Consensus       263 ~~~~l~~~~~d----~~i~~wd~~~~~~~~~  289 (615)
T 1pgu_A          263 DSQKFATVGAD----ATIRVWDVTTSKCVQK  289 (615)
T ss_dssp             SSSEEEEEETT----SEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEcCC----CcEEEEECCCCcEEEE
Confidence            77777887764    5788999987764433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=86.63  E-value=15  Score=31.69  Aligned_cols=92  Identities=11%  Similarity=0.224  Sum_probs=47.8

Q ss_pred             ceeEEEECCCCcEEe-CCCCCCCceeeeeEE-E--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeE
Q 018336          155 SHVFVYDFTTRRWTR-GKNMPDNRSFFAAGE-L--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEA  230 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~  230 (358)
                      ..+.+||..+.+-.. +..-....  .+... .  ++..++.|+.+.      .+.+||..+++....-  .........
T Consensus       176 ~~v~lwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~--~~h~~~v~~  245 (354)
T 2pbi_B          176 GTCALWDVESGQLLQSFHGHGADV--LCLDLAPSETGNTFVSGGCDK------KAMVWDMRSGQCVQAF--ETHESDVNS  245 (354)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCE--EEEEECCCSSCCEEEEEETTS------CEEEEETTTCCEEEEE--CCCSSCEEE
T ss_pred             CcEEEEeCCCCeEEEEEcCCCCCe--EEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCcEEEEe--cCCCCCeEE
Confidence            368888988765432 11111111  11111 1  346677776543      4899999887653321  111111222


Q ss_pred             EEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          231 VVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       231 ~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      +.+  ++.+++.|+.+        ..+..||..++.
T Consensus       246 v~~~p~~~~l~s~s~D--------~~v~lwd~~~~~  273 (354)
T 2pbi_B          246 VRYYPSGDAFASGSDD--------ATCRLYDLRADR  273 (354)
T ss_dssp             EEECTTSSEEEEEETT--------SCEEEEETTTTE
T ss_pred             EEEeCCCCEEEEEeCC--------CeEEEEECCCCc
Confidence            333  56677777653        246788987764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=86.61  E-value=14  Score=31.40  Aligned_cols=146  Identities=12%  Similarity=0.215  Sum_probs=67.2

Q ss_pred             eEEEEeCCCCCeeecCCCCCC-CCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCC-----cEEeCCCCCC
Q 018336          103 GVTVFDPVSLTWDRLGPVPEY-PAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTR-----RWTRGKNMPD  175 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~-~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~-----~W~~~~~~~~  175 (358)
                      .+..||...+....+..+... ... ... +++. -++.+++.|+.+       ..+.+||..+.     .+..+..+..
T Consensus        35 ~i~lw~~~~~~~~~~~~~~~~~h~~-~v~-~v~~sp~~~~las~s~D-------~~v~iw~~~~~~~~~~~~~~~~~~~~  105 (330)
T 2hes_X           35 KIKLVSVKYDDFTLIDVLDETAHKK-AIR-SVAWRPHTSLLAAGSFD-------STVSIWAKEESADRTFEMDLLAIIEG  105 (330)
T ss_dssp             CEEEEECSSSCCEEEEEECTTCCCS-CEE-EEEECTTSSEEEEEETT-------SCEEEEEC-------CCCEEEEEEC-
T ss_pred             EEEEEEecCCCeEEEEEEecCCccC-CEE-EEEECCCCCEEEEEeCC-------CcEEEEEcccCcCccccceeEEEEcC
Confidence            577788877654433222111 110 111 2222 256666777643       35777877432     1221111111


Q ss_pred             CceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCC--CceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCC
Q 018336          176 NRSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIK--DEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQG  249 (358)
Q Consensus       176 ~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~  249 (358)
                      ....-..+..  ++..++.|+.+.      .+.+||..+  ..++.+..+.........+.+  ++.+++.|+.+     
T Consensus       106 h~~~V~~v~~sp~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D-----  174 (330)
T 2hes_X          106 HENEVKGVAWSNDGYYLATCSRDK------SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD-----  174 (330)
T ss_dssp             ---CEEEEEECTTSCEEEEEETTS------CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT-----
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCC------EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC-----
Confidence            1111111122  566666666543      488888842  334433322222122222222  56677777653     


Q ss_pred             ceeeeeEEEECCCCceEEcCCc
Q 018336          250 IFDESAESYQLGTGEWKRAENA  271 (358)
Q Consensus       250 ~~~~~i~~yd~~~~~W~~~~~~  271 (358)
                         ..+..||..++.|..+..+
T Consensus       175 ---~~i~iW~~~~~~~~~~~~~  193 (330)
T 2hes_X          175 ---DTVRIWKDYDDDWECVAVL  193 (330)
T ss_dssp             ---SCEEEEEEETTEEEEEEEE
T ss_pred             ---CeEEEEECCCCCeeEEEEc
Confidence               2467788777777665544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=86.59  E-value=26  Score=34.40  Aligned_cols=146  Identities=12%  Similarity=-0.029  Sum_probs=82.8

Q ss_pred             ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCC--CCCCCceeeeeEE--ECCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336          136 SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGK--NMPDNRSFFAAGE--LNGRVIIAGGHDENKTALSSAWAYDLI  211 (358)
Q Consensus       136 ~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~  211 (358)
                      .++.||+.-..       ...++++++....-+.+.  .+..|+   ++++  .++.||+.--     .....|+++++.
T Consensus       481 ~~~~LY~tD~~-------~~~I~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~-----g~~~~I~~~~~d  545 (791)
T 3m0c_C          481 IHSNIYWTDSV-------LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDW-----GTPAKIKKGGLN  545 (791)
T ss_dssp             TTTEEEEEETT-------TTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEEC-----SSSCEEEEEETT
T ss_pred             cCCcEEEEecC-------CCeEEEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCEEEecC-----CCCCeEEEEecC
Confidence            47799998642       457999998876655542  222222   3333  3589999841     112568999887


Q ss_pred             CCceEecCCCccCcCce-eEEE--ECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecC
Q 018336          212 KDEWTELARMTQERDEC-EAVV--IGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREG  288 (358)
Q Consensus       212 t~~W~~~~~~p~~~~~~-~~~~--~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~  288 (358)
                      ...-+.+..-  ..... ++++  .+++||+.-..        ...|+++|+....=..+......  .           
T Consensus       546 G~~~~~lv~~--~l~~P~GLavD~~~~~LYwaD~~--------~~~I~~~d~dG~~~~~v~~~~~~--l-----------  602 (791)
T 3m0c_C          546 GVDIYSLVTE--NIQWPNGITLDLLSGRLYWVDSK--------LHSISSIDVNGGNRKTILEDEKR--L-----------  602 (791)
T ss_dssp             SCCEEEEECS--SCSCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCSCEEEEECTTT--T-----------
T ss_pred             CCceEEEEeC--CCCCceEEEEecCCCeEEEEeCC--------CCcEEEEecCCCceEEEecCCCc--c-----------
Confidence            5443333211  11222 2333  36889999632        34788999875433222211000  0           


Q ss_pred             ccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCC
Q 018336          289 KLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNG  335 (358)
Q Consensus       289 ~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~  335 (358)
                                  ....+++..+++||+.-...    ..|+++|..++
T Consensus       603 ------------~~P~glav~~~~lYwtD~~~----~~I~~~dk~tG  633 (791)
T 3m0c_C          603 ------------AHPFSLAVFEDKVFWTDIIN----EAIFSANRLTG  633 (791)
T ss_dssp             ------------SSEEEEEEETTEEEEEETTT----TEEEEEETTTC
T ss_pred             ------------CCCCEEEEeCCEEEEEECCC----CEEEEEeCCCC
Confidence                        11234566889999986543    67888876554

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=86.37  E-value=13  Score=30.85  Aligned_cols=55  Identities=16%  Similarity=0.193  Sum_probs=32.8

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcE
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRW  167 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W  167 (358)
                      .+..+|..+++-..+-.......  .. .+++. -++..++.|+.+       ..+.+||..+++-
T Consensus        46 tV~iWd~~tg~~~~~~~~~~~~~--~V-~~v~~~~~~~~l~sgs~D-------g~v~iw~~~~~~~  101 (318)
T 4ggc_A           46 SVYLWSASSGDILQLLQMEQPGE--YI-SSVAWIKEGNYLAVGTSS-------AEVQLWDVQQQKR  101 (318)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTC--CE-EEEEECTTSSEEEEEETT-------SEEEEEETTTTEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCC--eE-EEEEECCCCCEEEEEECC-------CcEEEeecCCcee
Confidence            68899999987665433322111  11 12222 256677777643       3688999988764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=86.07  E-value=21  Score=32.98  Aligned_cols=103  Identities=13%  Similarity=0.069  Sum_probs=56.3

Q ss_pred             CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          138 GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       138 ~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      +..++.|+..      ...+.+||..+.+... ..+...........+  ++.+++.|+.+      ..+.+||..+..-
T Consensus       456 ~~~l~~~~~~------d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~~~~~  522 (615)
T 1pgu_A          456 QNYVAVGLEE------GNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVM------GKILLYDLQSREV  522 (615)
T ss_dssp             SSEEEEEETT------TSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEE
T ss_pred             CCEEEEeecC------CCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCC------CeEEEeeCCCCcc
Confidence            5555555530      1368999998876542 222211111222222  66777777654      3499999987654


Q ss_pred             EecCCCcc-CcCceeEEEE------------CCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          216 TELARMTQ-ERDECEAVVI------------GSEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       216 ~~~~~~p~-~~~~~~~~~~------------~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      ..  .+.. .......+.+            ++++++.|+.+        ..+..||..+.
T Consensus       523 ~~--~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d--------g~i~iw~~~~~  573 (615)
T 1pgu_A          523 KT--SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD--------TNIFIYSVKRP  573 (615)
T ss_dssp             EE--CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT--------SCEEEEESSCT
T ss_pred             ee--EeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC--------CcEEEEECCCC
Confidence            32  2221 1122223333            67777777653        35788999875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=86.04  E-value=5  Score=34.19  Aligned_cols=106  Identities=10%  Similarity=0.109  Sum_probs=51.8

Q ss_pred             EEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE-C---CEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-N---GRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       139 ~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      .+++.|+.+..    -..+.+||..+++............-.+++.. +   +.+++.|+.+      ..+.+||..++.
T Consensus        32 ~l~~~~s~~~~----d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~  101 (357)
T 3i2n_A           32 KFVTMGNFARG----TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG------GNLHIWNLEAPE  101 (357)
T ss_dssp             EEEEEEC--CC----CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT------SCEEEECTTSCS
T ss_pred             eEEEecCccCC----CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC------CeEEEEeCCCCC
Confidence            56666653111    24788999888776543221111111122221 2   4666666544      348889988764


Q ss_pred             --eEecCCCccCcCceeEE-------EECCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          215 --WTELARMTQERDECEAV-------VIGSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       215 --W~~~~~~p~~~~~~~~~-------~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                        -..+.......  ..+.       .-++++++.|+.+        ..+..||+.++.
T Consensus       102 ~~~~~~~~~~~~v--~~~~~~~~~~~s~~~~~l~~~~~d--------~~i~vwd~~~~~  150 (357)
T 3i2n_A          102 MPVYSVKGHKEII--NAIDGIGGLGIGEGAPEIVTGSRD--------GTVKVWDPRQKD  150 (357)
T ss_dssp             SCSEEECCCSSCE--EEEEEESGGGCC-CCCEEEEEETT--------SCEEEECTTSCS
T ss_pred             ccEEEEEecccce--EEEeeccccccCCCccEEEEEeCC--------CeEEEEeCCCCC
Confidence              22222111111  1111       1356666666543        356788988764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=85.93  E-value=16  Score=31.53  Aligned_cols=61  Identities=13%  Similarity=0.208  Sum_probs=33.7

Q ss_pred             EEEEEcCcCCCCCCCcceeEEEECCCCc------EEeCCCCCCC---ceeeeeEEE-----CCEE-EEEcCcCCCCCCCC
Q 018336          139 KLVVMGGWDPASYSPVSHVFVYDFTTRR------WTRGKNMPDN---RSFFAAGEL-----NGRV-IIAGGHDENKTALS  203 (358)
Q Consensus       139 ~lyv~Gg~~~~~~~~~~~~~~yd~~t~~------W~~~~~~~~~---~~~~~~~~~-----~~~i-yv~GG~~~~~~~~~  203 (358)
                      .+++.|+.+       ..+.+||..+..      +..+...+..   ..-.+++..     ++.. ++.|+.+      .
T Consensus        82 ~~l~s~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d------g  148 (397)
T 1sq9_A           82 CLVATTSFS-------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK------G  148 (397)
T ss_dssp             EEEEEEETT-------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT------S
T ss_pred             cEEEEEcCC-------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC------C
Confidence            677776643       368888888776      6666544311   111222222     4455 6666544      3


Q ss_pred             eEEEEECCC
Q 018336          204 SAWAYDLIK  212 (358)
Q Consensus       204 ~~~~yd~~t  212 (358)
                      .+.+||..+
T Consensus       149 ~i~iwd~~~  157 (397)
T 1sq9_A          149 TTYIWKFHP  157 (397)
T ss_dssp             CEEEEEEES
T ss_pred             cEEEEeCCc
Confidence            488888766

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=85.91  E-value=18  Score=32.08  Aligned_cols=136  Identities=11%  Similarity=-0.032  Sum_probs=71.0

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc-EEeCCCCC--CCce
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR-WTRGKNMP--DNRS  178 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~-W~~~~~~~--~~~~  178 (358)
                      ..+..+|+.++.-..+......    +. .+....++.||+.....      ...++++|+.+.. ...+...+  ....
T Consensus       152 ~~I~~id~~~g~~~~~~~~~~~----~~-ia~~~~g~~l~~~d~~~------~~~I~~~d~~~~~~~~~~g~~~~~~~~~  220 (409)
T 3hrp_A          152 PRVRLISVDDNKVTTVHPGFKG----GK-PAVTKDKQRVYSIGWEG------THTVYVYMKASGWAPTRIGQLGSTFSGK  220 (409)
T ss_dssp             TEEEEEETTTTEEEEEEETCCB----CB-CEECTTSSEEEEEBSST------TCEEEEEEGGGTTCEEEEEECCTTSCSC
T ss_pred             CcEEEEECCCCEEEEeeccCCC----Cc-eeEecCCCcEEEEecCC------CceEEEEEcCCCceeEEeeeccchhcCC
Confidence            3677788877655444322111    11 12222245677775421      1279999987653 22331111  1111


Q ss_pred             eeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecC---CCccCcCc-e-eEEEE--CCEEEEEeCcccCCCC
Q 018336          179 FFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA---RMTQERDE-C-EAVVI--GSEFWVVSGYKTERQG  249 (358)
Q Consensus       179 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~p~~~~~-~-~~~~~--~~~lyv~gG~~~~~~~  249 (358)
                      -++++..  ++.||+...       ...++.||+.+.....+.   ........ . .+++.  ++.||+....      
T Consensus       221 p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~------  287 (409)
T 3hrp_A          221 IGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN------  287 (409)
T ss_dssp             CCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT------
T ss_pred             cEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC------
Confidence            2233332  688999532       247999999887655442   11111122 1 44444  5789998632      


Q ss_pred             ceeeeeEEEECCCC
Q 018336          250 IFDESAESYQLGTG  263 (358)
Q Consensus       250 ~~~~~i~~yd~~~~  263 (358)
                        ...|.+||+...
T Consensus       288 --~~~I~~~~~~g~  299 (409)
T 3hrp_A          288 --LSSVYKITPDGE  299 (409)
T ss_dssp             --TTEEEEECTTCC
T ss_pred             --CCEEEEEecCCC
Confidence              346888887754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=85.88  E-value=17  Score=31.63  Aligned_cols=181  Identities=10%  Similarity=0.082  Sum_probs=87.6

Q ss_pred             eEEEEeCCCCCeeecCC--CCCCCCCCCceeEEEE--ECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCC
Q 018336          103 GVTVFDPVSLTWDRLGP--VPEYPAGLPLFCQVAS--SQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDN  176 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~--~~~~~~~~~~~~~~~~--~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~  176 (358)
                      .+..||..+++-...-.  .+..... . -..+..  .++.+++.|+.+       ..+.+||.....  -..+..-..+
T Consensus       181 ~i~~wd~~~~~~~~~~~~~~~~~h~~-~-v~~~~~~~~~~~~l~sgs~D-------~~v~~wd~~~~~~~~~~~~~h~~~  251 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGSEFPSGHTA-D-VLSLSINSLNANMFISGSCD-------TTVRLWDLRITSRAVRTYHGHEGD  251 (380)
T ss_dssp             CEEEECTTTCCEEEEECCCSSSSCCS-C-EEEEEECSSSCCEEEEEETT-------SCEEEEETTTTCCCCEEECCCSSC
T ss_pred             cEEEEEcCCCcEEEEeecccCCCCcc-C-eEEEEeecCCCCEEEEEECC-------CeEEEEECCCCCcceEEECCcCCC
Confidence            47778887776543321  1111110 0 111221  256778887754       368888976321  1111110000


Q ss_pred             ceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEec-CCCcc----CcCce-eE-EEECCEEEEEeCcccCCC
Q 018336          177 RSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTEL-ARMTQ----ERDEC-EA-VVIGSEFWVVSGYKTERQ  248 (358)
Q Consensus       177 ~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~p~----~~~~~-~~-~~~~~~lyv~gG~~~~~~  248 (358)
                      .  .+++. -++..++.|+.+.      .+.+||..++.-... ...+.    ..... .+ ...+|++++.|+.+    
T Consensus       252 v--~~v~~~p~~~~l~s~s~D~------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d----  319 (380)
T 3iz6_a          252 I--NSVKFFPDGQRFGTGSDDG------TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN----  319 (380)
T ss_dssp             C--CEEEECTTSSEEEEECSSS------CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT----
T ss_pred             e--EEEEEecCCCeEEEEcCCC------eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC----
Confidence            0  11222 2566777776543      488999987653322 11111    11111 22 23467777777542    


Q ss_pred             CceeeeeEEEECCCCceE-EcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceE
Q 018336          249 GIFDESAESYQLGTGEWK-RAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEF  327 (358)
Q Consensus       249 ~~~~~~i~~yd~~~~~W~-~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i  327 (358)
                          ..+.+||..+.+-. .+..+..    .+..                   ...+..+..+++.++.|+.+    ..|
T Consensus       320 ----g~i~vwd~~~~~~~~~~~~~~~----~h~~-------------------~v~~l~~s~dg~~l~sgs~D----~~i  368 (380)
T 3iz6_a          320 ----GDCYVWDTLLAEMVLNLGTLQN----SHEG-------------------RISCLGLSSDGSALCTGSWD----KNL  368 (380)
T ss_dssp             ----SCEEEEETTTCCEEEEECCSCS----SCCC-------------------CCCEEEECSSSSEEEEECTT----SCE
T ss_pred             ----CCEEEEECCCCceEEEEecccC----CCCC-------------------ceEEEEECCCCCEEEEeeCC----CCE
Confidence                35788998776543 2222211    1110                   01122344577888888875    567


Q ss_pred             EEEECCCC
Q 018336          328 YVVEGRNG  335 (358)
Q Consensus       328 ~~yd~~~~  335 (358)
                      .+||....
T Consensus       369 ~iW~~~~~  376 (380)
T 3iz6_a          369 KIWAFSGH  376 (380)
T ss_dssp             EEEECCSS
T ss_pred             EEEecCCC
Confidence            77776654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=85.65  E-value=11  Score=31.51  Aligned_cols=107  Identities=9%  Similarity=0.006  Sum_probs=57.7

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      ++.||+....       ...+++||+.++....... +. . -.+.+. -++.+|+..        ...+..||++++++
T Consensus        24 ~~~l~~~d~~-------~~~i~~~d~~~~~~~~~~~-~~-~-~~~i~~~~dG~l~v~~--------~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           24 SNSLLFVDIP-------AKKVCRWDSFTKQVQRVTM-DA-P-VSSVALRQSGGYVATI--------GTKFCALNWKEQSA   85 (297)
T ss_dssp             TTEEEEEETT-------TTEEEEEETTTCCEEEEEC-SS-C-EEEEEEBTTSSEEEEE--------TTEEEEEETTTTEE
T ss_pred             CCEEEEEECC-------CCEEEEEECCCCcEEEEeC-CC-c-eEEEEECCCCCEEEEE--------CCeEEEEECCCCcE
Confidence            4678887643       3479999999876644321 11 1 122222 256666652        14699999999988


Q ss_pred             EecCCCccC--cCceeEEEE--CCEEEEEeCcccCC---CCceeeeeEEEECC
Q 018336          216 TELARMTQE--RDECEAVVI--GSEFWVVSGYKTER---QGIFDESAESYQLG  261 (358)
Q Consensus       216 ~~~~~~p~~--~~~~~~~~~--~~~lyv~gG~~~~~---~~~~~~~i~~yd~~  261 (358)
                      +.+......  ......+.+  +|++|+..-.....   .......++.+|+.
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~  138 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD  138 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC
Confidence            876543221  111222233  67888753211100   00113467888875

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=85.56  E-value=12  Score=35.90  Aligned_cols=150  Identities=11%  Similarity=0.018  Sum_probs=76.5

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc---EEeCCCCCCCce
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR---WTRGKNMPDNRS  178 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~---W~~~~~~~~~~~  178 (358)
                      ..++.+|..+..+..+.....     ... ..+..++.+|+....+.    ....++++|..+..   |+.+-+......
T Consensus       252 ~~l~~~~~~~~~~~~l~~~~~-----~~~-~~~~~~g~l~~~s~~~~----~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  321 (695)
T 2bkl_A          252 NDVYWKRPGEKDFRLLVKGVG-----AKY-EVHAWKDRFYVLTDEGA----PRQRVFEVDPAKPARASWKEIVPEDSSAS  321 (695)
T ss_dssp             EEEEEECTTCSSCEEEEECSS-----CCE-EEEEETTEEEEEECTTC----TTCEEEEEBTTBCSGGGCEEEECCCSSCE
T ss_pred             eEEEEEcCCCCceEEeecCCC-----ceE-EEEecCCcEEEEECCCC----CCCEEEEEeCCCCCccCCeEEecCCCCCe
Confidence            356666766667776654222     111 22234555666654321    23579999987755   776643221111


Q ss_pred             eeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeE-EEECCEEEEEeCcccCCCCceeeeeEE
Q 018336          179 FFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEA-VVIGSEFWVVSGYKTERQGIFDESAES  257 (358)
Q Consensus       179 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~-~~~~~~lyv~gG~~~~~~~~~~~~i~~  257 (358)
                      -...+..++.+++....+.    ...++.+++....-+.+. ++........ ..-+++.+++...+..    ....++.
T Consensus       322 l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~-~~~~~~v~~~~~s~d~~~l~~~~ss~~----~P~~v~~  392 (695)
T 2bkl_A          322 LLSVSIVGGHLSLEYLKDA----TSEVRVATLKGKPVRTVQ-LPGVGAASNLMGLEDLDDAYYVFTSFT----TPRQIYK  392 (695)
T ss_dssp             EEEEEEETTEEEEEEEETT----EEEEEEEETTCCEEEECC-CSSSSEECCCBSCTTCSEEEEEEEETT----EEEEEEE
T ss_pred             EEEEEEECCEEEEEEEECC----EEEEEEEeCCCCeeEEec-CCCCeEEEEeecCCCCCEEEEEEcCCC----CCCEEEE
Confidence            1223334888887764332    356888887654444443 2211110011 1114433333222222    2567899


Q ss_pred             EECCCCceEEcCC
Q 018336          258 YQLGTGEWKRAEN  270 (358)
Q Consensus       258 yd~~~~~W~~~~~  270 (358)
                      ||+.+++.+.+..
T Consensus       393 ~d~~~g~~~~l~~  405 (695)
T 2bkl_A          393 TSVSTGKSELWAK  405 (695)
T ss_dssp             EETTTCCEEEEEE
T ss_pred             EECCCCcEEEEec
Confidence            9999988766654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=85.52  E-value=15  Score=30.57  Aligned_cols=81  Identities=9%  Similarity=0.109  Sum_probs=43.5

Q ss_pred             ceeEEEECCCCcEEeCCCCCCCcee-eeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE
Q 018336          155 SHVFVYDFTTRRWTRGKNMPDNRSF-FAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV  232 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~~~~~~~~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~  232 (358)
                      +.+.+||..+++....-.+...... .+++. -+++.++.|+.+      ..+.++|.++++-....  ...........
T Consensus        45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D------g~v~iw~~~~~~~~~~~--~~h~~~~~~~~  116 (318)
T 4ggc_A           45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRLRNM--TSHSARVGSLS  116 (318)
T ss_dssp             TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEE--ECCSSCEEEEE
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC------CcEEEeecCCceeEEEe--cCccceEEEee
Confidence            3689999998876554322222111 22222 256677777654      35889999887543221  11112223345


Q ss_pred             ECCEEEEEeCc
Q 018336          233 IGSEFWVVSGY  243 (358)
Q Consensus       233 ~~~~lyv~gG~  243 (358)
                      .++.+.+.|+.
T Consensus       117 ~~~~~l~s~~~  127 (318)
T 4ggc_A          117 WNSYILSSGSR  127 (318)
T ss_dssp             EETTEEEEEET
T ss_pred             cCCCEEEEEec
Confidence            55666666654

>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A

Probab=85.48  E-value=13  Score=29.94  Aligned_cols=152  Identities=14%  Similarity=0.213  Sum_probs=80.0

Q ss_pred             eeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc-E--EeC----CCCCCCceeeeeEE---ECCEEEEEcCcCCCC
Q 018336          130 FCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR-W--TRG----KNMPDNRSFFAAGE---LNGRVIIAGGHDENK  199 (358)
Q Consensus       130 ~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~-W--~~~----~~~~~~~~~~~~~~---~~~~iyv~GG~~~~~  199 (358)
                      ..+++...+.+|++-|         +.+|+++..... .  ..+    +.+|.   ...+|.   .++++|++-|     
T Consensus        33 ~DAi~~~~g~~~fFkg---------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~---~IDAA~~~~~~~k~yfFkG-----   95 (218)
T 1gen_A           33 FDGIAQIRGEIFFFKD---------RFIWRTVTPRDKPMGPLLVATFWPELPE---KIDAVYEAPQEEKAVFFAG-----   95 (218)
T ss_dssp             CSEEEEETTEEEEEET---------TEEEEESSTTSCCEEEEEGGGTCTTSCS---CCSEEEEETTTTEEEEEET-----
T ss_pred             EeEEEeCCCcEEEEEC---------CEEEEEeCCCCccCCCEEHHHhcCCCCC---CccEEEEECCCCEEEEEeC-----
Confidence            4466677999999977         256776654321 1  112    22332   222332   2688999955     


Q ss_pred             CCCCeEEEEECCCCc---eEecC--CCccCcCceeEE-E--ECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCc
Q 018336          200 TALSSAWAYDLIKDE---WTELA--RMTQERDECEAV-V--IGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENA  271 (358)
Q Consensus       200 ~~~~~~~~yd~~t~~---W~~~~--~~p~~~~~~~~~-~--~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~  271 (358)
                         +..++|+..+-.   =+.+.  .+|.......++ .  .++++|++-|.          ..++||..+++-.  ..-
T Consensus        96 ---~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~----------~ywr~d~~~~~v~--~gy  160 (218)
T 1gen_A           96 ---NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD----------KFWRYNEVKKKMD--PGF  160 (218)
T ss_dssp             ---TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT----------EEEEEETTTTEEC--SSC
T ss_pred             ---CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECC----------EEEEEECcccccc--CCC
Confidence               458888853100   01121  122221122233 3  36899999764          3578998776321  111


Q ss_pred             cccCCCCCceeeeeecCccCceeccccceeeceEEEEe--CCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          272 WKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVEL--GGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       272 p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~--~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                            ++.        -.+.|..+|..+  . ++...  ++.+|++-|      +..|+||..+.+
T Consensus       161 ------Pr~--------i~~~w~g~p~~i--d-aAf~~~~~g~~YfFkg------~~y~~~~~~~~~  204 (218)
T 1gen_A          161 ------PKL--------IADAWNAIPDNL--D-AVVDLQGGGHSYFFKG------AYYLKLENQSLK  204 (218)
T ss_dssp             ------CEE--------HHHHSSSCCSSC--S-EEEECTTTCEEEEEET------TEEEEEETTEEE
T ss_pred             ------Ccc--------hhhccCCCCCCC--C-EEEEEcCCCcEEEEEC------CEEEEEECCcee
Confidence                  110        012344444332  2 23333  489999988      479999987654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=85.48  E-value=9.2  Score=39.43  Aligned_cols=177  Identities=11%  Similarity=0.087  Sum_probs=86.3

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAA  182 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~  182 (358)
                      .+..||..+++......-...    ........-++..++.|+.+       ..+.+||..+.....+......  -...
T Consensus       984 ~i~i~d~~~~~~~~~~~~h~~----~v~~l~~s~dg~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~--v~~~ 1050 (1249)
T 3sfz_A          984 AIKIIELPNNRVFSSGVGHKK----AVRHIQFTADGKTLISSSED-------SVIQVWNWQTGDYVFLQAHQET--VKDF 1050 (1249)
T ss_dssp             CCEEEETTTTSCEEECCCCSS----CCCCEEECSSSSCEEEECSS-------SBEEEEETTTTEEECCBCCSSC--EEEE
T ss_pred             CEEEEEcCCCceeeecccCCC----ceEEEEECCCCCEEEEEcCC-------CEEEEEECCCCceEEEecCCCc--EEEE
Confidence            466777776654332211110    11112223355666666643       3689999998877644322211  1222


Q ss_pred             EEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCC
Q 018336          183 GELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGT  262 (358)
Q Consensus       183 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~  262 (358)
                      +...+..++.|+.+      ..+.+||..+++-...-.............-++++++.|+.+        ..+..||..+
T Consensus      1051 ~~~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d--------~~v~iwd~~~ 1116 (1249)
T 3sfz_A         1051 RLLQDSRLLSWSFD------GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSAD--------KTAKIWSFDL 1116 (1249)
T ss_dssp             EECSSSEEEEEESS------SEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCS--------SCCCEECSSS
T ss_pred             EEcCCCcEEEEECC------CcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCC--------CcEEEEECCC
Confidence            22333334454433      358999998765322111111111112223466677777653        2456788776


Q ss_pred             CceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          263 GEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       263 ~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                      ++  .+..+.     .+...                   ..+.....++++++.|+.+    ..|.+||..+++
T Consensus      1117 ~~--~~~~l~-----~h~~~-------------------v~~~~~s~dg~~lat~~~d----g~i~vwd~~~~~ 1160 (1249)
T 3sfz_A         1117 LS--PLHELK-----GHNGC-------------------VRCSAFSLDGILLATGDDN----GEIRIWNVSDGQ 1160 (1249)
T ss_dssp             SS--CSBCCC-----CCSSC-------------------EEEEEECSSSSEEEEEETT----SCCCEEESSSSC
T ss_pred             cc--eeeeec-----cCCCc-------------------EEEEEECCCCCEEEEEeCC----CEEEEEECCCCc
Confidence            53  122221     11100                   1112234467788888764    467888887655

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=85.43  E-value=16  Score=30.98  Aligned_cols=139  Identities=12%  Similarity=0.092  Sum_probs=68.0

Q ss_pred             eEEEEeCCCCCee-ecCCCCCCCCCCCceeEEEEEC----CEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCC
Q 018336          103 GVTVFDPVSLTWD-RLGPVPEYPAGLPLFCQVASSQ----GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDN  176 (358)
Q Consensus       103 ~~~~~d~~~~~W~-~~~~~~~~~~~~~~~~~~~~~~----~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~  176 (358)
                      .+..||..++... .+.....+.............+    +.+++.|+.+       ..+.+||..+.+-.. +..... 
T Consensus        45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-------g~i~v~d~~~~~~~~~~~~~~~-  116 (366)
T 3k26_A           45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR-------GIIRIINPITMQCIKHYVGHGN-  116 (366)
T ss_dssp             EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT-------CEEEEECTTTCCEEEEEESCCS-
T ss_pred             EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC-------CEEEEEEchhceEeeeecCCCC-
Confidence            5778888765432 2222111111111222222333    4677777643       378999988765322 211111 


Q ss_pred             ceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEec-CCCccCcCceeEEEE--CCEEEEEeCcccCCCCce
Q 018336          177 RSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTEL-ARMTQERDECEAVVI--GSEFWVVSGYKTERQGIF  251 (358)
Q Consensus       177 ~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~  251 (358)
                       .-.+++..  ++.+++.|+.+      ..+.+||..+++-... ..+.........+.+  +++.++.|+.+       
T Consensus       117 -~i~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------  182 (366)
T 3k26_A          117 -AINELKFHPRDPNLLLSVSKD------HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-------  182 (366)
T ss_dssp             -CEEEEEECSSCTTEEEEEETT------SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT-------
T ss_pred             -cEEEEEECCCCCCEEEEEeCC------CeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC-------
Confidence             11122221  55677776654      3599999987754332 111222222222322  46666666543       


Q ss_pred             eeeeEEEECCCCc
Q 018336          252 DESAESYQLGTGE  264 (358)
Q Consensus       252 ~~~i~~yd~~~~~  264 (358)
                       ..+..||..+.+
T Consensus       183 -g~i~i~d~~~~~  194 (366)
T 3k26_A          183 -HSLKLWRINSKR  194 (366)
T ss_dssp             -SCEEEEESCSHH
T ss_pred             -CCEEEEECCCCc
Confidence             356788887653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=85.35  E-value=8.1  Score=32.92  Aligned_cols=107  Identities=10%  Similarity=0.047  Sum_probs=51.3

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++.+++.|+.+       ..+.+||..+.+-.. +..-..+  -.+++.. ++..++.|+.+      ..+.+||..+++
T Consensus        43 ~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~  107 (369)
T 3zwl_B           43 EGDLLFSCSKD-------SSASVWYSLNGERLGTLDGHTGT--IWSIDVDCFTKYCVTGSAD------YSIKLWDVSNGQ  107 (369)
T ss_dssp             TSCEEEEEESS-------SCEEEEETTTCCEEEEECCCSSC--EEEEEECTTSSEEEEEETT------TEEEEEETTTCC
T ss_pred             CCCEEEEEeCC-------CEEEEEeCCCchhhhhhhhcCCc--EEEEEEcCCCCEEEEEeCC------CeEEEEECCCCc
Confidence            45555555532       368889987765432 2211111  1122222 45566666543      369999998876


Q ss_pred             eEecCCCccCcCceeEE-EECCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          215 WTELARMTQERDECEAV-VIGSEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       215 W~~~~~~p~~~~~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      -...-..+..  ...+. .-+++.++.++.....   ....+..||..+.
T Consensus       108 ~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~~~~---~~g~i~~~d~~~~  152 (369)
T 3zwl_B          108 CVATWKSPVP--VKRVEFSPCGNYFLAILDNVMK---NPGSINIYEIERD  152 (369)
T ss_dssp             EEEEEECSSC--EEEEEECTTSSEEEEEECCBTT---BCCEEEEEEEEEC
T ss_pred             EEEEeecCCC--eEEEEEccCCCEEEEecCCccC---CCCEEEEEEecCC
Confidence            5433222111  11222 2245555555432111   1245677776543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=85.22  E-value=16  Score=30.76  Aligned_cols=90  Identities=13%  Similarity=0.087  Sum_probs=46.4

Q ss_pred             eEEEEeCCCCC----eeecCCCCCCCCCCCceeEEEEECCE-EEEEcCcCCCCCCCcceeEEEEC-CCCcEEeCCC--CC
Q 018336          103 GVTVFDPVSLT----WDRLGPVPEYPAGLPLFCQVASSQGK-LVVMGGWDPASYSPVSHVFVYDF-TTRRWTRGKN--MP  174 (358)
Q Consensus       103 ~~~~~d~~~~~----W~~~~~~~~~~~~~~~~~~~~~~~~~-lyv~Gg~~~~~~~~~~~~~~yd~-~t~~W~~~~~--~~  174 (358)
                      .+..||..+..    -..+.....     ........-++. .++.|+.+       ..+.+||. .+.+...+..  ..
T Consensus        34 ~v~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~  101 (342)
T 1yfq_A           34 SLTVYKFDIQAKNVDLLQSLRYKH-----PLLCCNFIDNTDLQIYVGTVQ-------GEILKVDLIGSPSFQALTNNEAN  101 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSS-----CEEEEEEEESSSEEEEEEETT-------SCEEEECSSSSSSEEECBSCCCC
T ss_pred             eEEEEEeCCCCccccceeeeecCC-----ceEEEEECCCCCcEEEEEcCC-------CeEEEEEeccCCceEeccccCCC
Confidence            56777776665    322221111     122222233566 66666643       36999999 8887766544  22


Q ss_pred             CCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCC
Q 018336          175 DNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIK  212 (358)
Q Consensus       175 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t  212 (358)
                      .+..  +++...+..++.|+.+      ..+.+||..+
T Consensus       102 ~~v~--~l~~~~~~~l~s~~~d------~~i~iwd~~~  131 (342)
T 1yfq_A          102 LGIC--RICKYGDDKLIAASWD------GLIEVIDPRN  131 (342)
T ss_dssp             SCEE--EEEEETTTEEEEEETT------SEEEEECHHH
T ss_pred             CceE--EEEeCCCCEEEEEcCC------CeEEEEcccc
Confidence            2222  2222224455555433      3588888764

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=85.16  E-value=22  Score=32.30  Aligned_cols=48  Identities=10%  Similarity=0.077  Sum_probs=31.3

Q ss_pred             eEEEEeCCCCCeeec--CCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc
Q 018336          103 GVTVFDPVSLTWDRL--GPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR  166 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~--~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~  166 (358)
                      ..+.||..+++....  +.+|.       -.++....+++|++-|         +..|+||+.+++
T Consensus       168 ~yw~yd~~~~~~~~~~w~gi~~-------iDAA~~~~g~~YfFkG---------~~y~rfd~~~~~  217 (460)
T 1qhu_A          168 RKWFWDLTTGTKKERSWPAVGN-------CTSALRWLGRYYCFQG---------NQFLRFNPVSGE  217 (460)
T ss_dssp             EEEEEETTTTEEEEECCTTSCC-------CSEEEEETTEEEEEET---------TEEEEECTTTCC
T ss_pred             cEEEEecccceeecccCCCCCc-------cchheeeCCceEEEEC---------CEEEEEcCccCc
Confidence            578899887754321  22222       1255566799999987         368899887654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=85.08  E-value=18  Score=31.23  Aligned_cols=154  Identities=9%  Similarity=-0.043  Sum_probs=77.4

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECC-EEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQG-KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~  180 (358)
                      ..++.+|..+++-..+...+...    .......-++ .|+....        ...++++|..+.+-+.+...+......
T Consensus        60 ~~l~~~d~~~g~~~~lt~~~~~~----~~~~~~spdg~~l~~~~~--------~~~l~~~d~~~g~~~~~~~~~~~~~~~  127 (388)
T 3pe7_A           60 WNYYLLDLNTQVATQLTEGRGDN----TFGGFLSPDDDALFYVKD--------GRNLMRVDLATLEENVVYQVPAEWVGY  127 (388)
T ss_dssp             CEEEEEETTTCEEEECCCSSCBC----SSSCEECTTSSEEEEEET--------TTEEEEEETTTCCEEEEEECCTTEEEE
T ss_pred             ceEEEEeCCCCceEEeeeCCCCC----ccceEEcCCCCEEEEEeC--------CCeEEEEECCCCcceeeeechhhcccc
Confidence            36889999998887776544321    1111223344 4544442        137999999998776655444433222


Q ss_pred             eeEE--ECCEEEEEcCcCC----------------CCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE-CCEEEEEe
Q 018336          181 AAGE--LNGRVIIAGGHDE----------------NKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI-GSEFWVVS  241 (358)
Q Consensus       181 ~~~~--~~~~iyv~GG~~~----------------~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~g  241 (358)
                      ....  -++..++.--...                .......++.+|+.++.-+.+...+.. .......- +|+..++.
T Consensus       128 ~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~sp~dg~~l~~~  206 (388)
T 3pe7_A          128 GTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQW-LGHPIYRPYDDSTVAFC  206 (388)
T ss_dssp             EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSC-EEEEEEETTEEEEEEEE
T ss_pred             cceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCcc-ccccEECCCCCCEEEEE
Confidence            2211  2333332110000                011236799999998876655422211 11112232 45543333


Q ss_pred             CcccCCCCceeeeeEEEECCCCceEEcCC
Q 018336          242 GYKTERQGIFDESAESYQLGTGEWKRAEN  270 (358)
Q Consensus       242 G~~~~~~~~~~~~i~~yd~~~~~W~~~~~  270 (358)
                      ......  .....++.+|..+.....+..
T Consensus       207 ~~~~~~--~~~~~l~~~d~~~~~~~~l~~  233 (388)
T 3pe7_A          207 HEGPHD--LVDARMWLINEDGTNMRKVKT  233 (388)
T ss_dssp             ECSCTT--TSSCSEEEEETTSCCCEESCC
T ss_pred             EecCCC--CCcceEEEEeCCCCceEEeee
Confidence            221111  113478889988776666543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=84.86  E-value=21  Score=31.83  Aligned_cols=106  Identities=8%  Similarity=0.017  Sum_probs=54.1

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe--CCCCCCCc-eeeeeE-EEC---CEEEEEcCcCCCCCCCCeEEEEE
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR--GKNMPDNR-SFFAAG-ELN---GRVIIAGGHDENKTALSSAWAYD  209 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~--~~~~~~~~-~~~~~~-~~~---~~iyv~GG~~~~~~~~~~~~~yd  209 (358)
                      ++..++.|+.       ...+++++..+.....  +..+.... .-.+++ .-+   +.+++.|+.+      ..+.+||
T Consensus       160 ~~~~l~~~~~-------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d------~~i~vwd  226 (450)
T 2vdu_B          160 DDTTVIIADK-------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD------EHIKISH  226 (450)
T ss_dssp             TSSEEEEEET-------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT------SCEEEEE
T ss_pred             CCCEEEEEeC-------CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC------CcEEEEE
Confidence            4555555543       2368888887655331  11111111 111222 235   7777777654      3588999


Q ss_pred             CCCCceEec--CCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCce
Q 018336          210 LIKDEWTEL--ARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEW  265 (358)
Q Consensus       210 ~~t~~W~~~--~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W  265 (358)
                      ..+......  ...... ....... ++++++.|+.+        ..+.+||..+++-
T Consensus       227 ~~~~~~~~~~~~~h~~~-v~~~~~s-d~~~l~s~~~d--------~~v~vwd~~~~~~  274 (450)
T 2vdu_B          227 YPQCFIVDKWLFGHKHF-VSSICCG-KDYLLLSAGGD--------DKIFAWDWKTGKN  274 (450)
T ss_dssp             ESCTTCEEEECCCCSSC-EEEEEEC-STTEEEEEESS--------SEEEEEETTTCCE
T ss_pred             CCCCceeeeeecCCCCc-eEEEEEC-CCCEEEEEeCC--------CeEEEEECCCCcE
Confidence            877653321  111111 1111123 77777777642        3577888887653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=84.70  E-value=28  Score=33.14  Aligned_cols=153  Identities=12%  Similarity=0.056  Sum_probs=77.2

Q ss_pred             cceeEEEECCCCcEEeCCCCCCCceeeeeEEE--CCE-EEEEcCcCCCCCCCCeEEEEECCCC-ceEecCCCccCcC---
Q 018336          154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL--NGR-VIIAGGHDENKTALSSAWAYDLIKD-EWTELARMTQERD---  226 (358)
Q Consensus       154 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~~~p~~~~---  226 (358)
                      ...++++|..+.+-..+...............  +++ |++. ..+.. .....+..+|..++ ..+.+........   
T Consensus       234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~-~~~~~-~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~  311 (706)
T 2z3z_A          234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVA-EVNRA-QNECKVNAYDAETGRFVRTLFVETDKHYVEP  311 (706)
T ss_dssp             EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEE-EECTT-SCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred             eeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEE-EeCCC-CCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence            46799999998876665432211122222222  454 4443 32221 22357899999988 6665532111110   


Q ss_pred             -ceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeec
Q 018336          227 -ECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFG  303 (358)
Q Consensus       227 -~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~  303 (358)
                       ......-  +|++++.+...+      ...++.+|...+....+..-.    ....                      .
T Consensus       312 ~~~~~~sp~~dg~~l~~~~~~g------~~~l~~~~~~~~~~~~l~~~~----~~v~----------------------~  359 (706)
T 2z3z_A          312 LHPLTFLPGSNNQFIWQSRRDG------WNHLYLYDTTGRLIRQVTKGE----WEVT----------------------N  359 (706)
T ss_dssp             CSCCEECTTCSSEEEEEECTTS------SCEEEEEETTSCEEEECCCSS----SCEE----------------------E
T ss_pred             cCCceeecCCCCEEEEEEccCC------ccEEEEEECCCCEEEecCCCC----eEEE----------------------e
Confidence             1112233  778665554321      346777887666666654311    0000                      0


Q ss_pred             eEEEEeCC-eEEEECCCCCCCCceEEEEECCCCceEee
Q 018336          304 TCRVELGG-CTLVTGSGYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       304 ~~~~~~~~-~i~v~gG~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                      .....-++ .||+.+.........+|.+|..+.+.+.+
T Consensus       360 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~l  397 (706)
T 2z3z_A          360 FAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKDL  397 (706)
T ss_dssp             EEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEES
T ss_pred             eeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCceec
Confidence            00122233 56555544322225888999888776665

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=84.69  E-value=18  Score=30.81  Aligned_cols=141  Identities=13%  Similarity=0.061  Sum_probs=75.5

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCC--cEEeCCCC------
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTR--RWTRGKNM------  173 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~--~W~~~~~~------  173 (358)
                      .+..+|+.+++-........    +.....++.. ++.||+....       ...+.+||+...  .-..+...      
T Consensus        70 ~i~~~d~~~g~~~~~~~~~~----~~~p~gia~d~~g~l~v~d~~-------~~~v~~~~~~g~~~~~~~~~~~~~~g~~  138 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKNL----FYLPHGLSIDTDGNYWVTDVA-------LHQVFKLDPHSKEGPLLILGRSMQPGSD  138 (329)
T ss_dssp             CEEEECTTTCCEEEEECTTT----CSSEEEEEECTTSCEEEEETT-------TTEEEEECTTCSSCCSEEESBTTBCCCS
T ss_pred             cEEEEECCCCeEEeccCCCc----cCCceEEEECCCCCEEEEECC-------CCEEEEEeCCCCeEEEEEecccCCCCCC
Confidence            68899998777543321111    0112234333 6779988653       347999998765  22222210      


Q ss_pred             CCCceee-eeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCC-------ccCcCceeEEEE--C-CEEEEE
Q 018336          174 PDNRSFF-AAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM-------TQERDECEAVVI--G-SEFWVV  240 (358)
Q Consensus       174 ~~~~~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-------p~~~~~~~~~~~--~-~~lyv~  240 (358)
                      ....... ..+..  ++.+|+..++.     ...+.+||.....-..+...       +........+.+  + +.|||.
T Consensus       139 ~~~~~~P~~ia~~~~~g~lyv~d~~~-----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~  213 (329)
T 3fvz_A          139 QNHFCQPTDVAVEPSTGAVFVSDGYC-----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA  213 (329)
T ss_dssp             TTCCSSEEEEEECTTTCCEEEEECSS-----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE
T ss_pred             ccccCCCcEEEEeCCCCeEEEEeCCC-----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE
Confidence            1111122 33333  68899996522     24689999654433333211       111122233333  3 789998


Q ss_pred             eCcccCCCCceeeeeEEEECCCCceEE
Q 018336          241 SGYKTERQGIFDESAESYQLGTGEWKR  267 (358)
Q Consensus       241 gG~~~~~~~~~~~~i~~yd~~~~~W~~  267 (358)
                      ...        ...|.+||+.+++...
T Consensus       214 d~~--------~~~I~~~~~~~G~~~~  232 (329)
T 3fvz_A          214 DRE--------NGRIQCFKTDTKEFVR  232 (329)
T ss_dssp             ETT--------TTEEEEEETTTCCEEE
T ss_pred             ECC--------CCEEEEEECCCCcEEE
Confidence            743        3468899999776644

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=84.59  E-value=30  Score=33.40  Aligned_cols=148  Identities=14%  Similarity=0.087  Sum_probs=81.0

Q ss_pred             ceEEEEeCCCC--C-eeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCC--CcEEeCCCCCCC
Q 018336          102 YGVTVFDPVSL--T-WDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTT--RRWTRGKNMPDN  176 (358)
Q Consensus       102 ~~~~~~d~~~~--~-W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~  176 (358)
                      ..++.+|..+.  . |..+.....     .....+...++.||+....+.    ....++++|..+  ..|+.+-+-...
T Consensus       294 ~~l~~~d~~~~~~~~~~~l~~~~~-----~~~~~~~~dg~~l~~~s~~~~----~~~~l~~~d~~~~~~~~~~l~~~~~~  364 (741)
T 1yr2_A          294 NTVHVARVTNGKIGPVTALIPDLK-----AQWDFVDGVGDQLWFVSGDGA----PLKKIVRVDLSGSTPRFDTVVPESKD  364 (741)
T ss_dssp             CEEEEEEEETTEECCCEEEECSSS-----SCEEEEEEETTEEEEEECTTC----TTCEEEEEECSSSSCEEEEEECCCSS
T ss_pred             ceEEEEECCCCCCcccEEecCCCC-----ceEEEEeccCCEEEEEECCCC----CCCEEEEEeCCCCccccEEEecCCCC
Confidence            47888888776  6 777654322     112223345777887765321    235799999887  578876432211


Q ss_pred             ceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE--ECCE-EEEEeCcccCCCCceee
Q 018336          177 RSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV--IGSE-FWVVSGYKTERQGIFDE  253 (358)
Q Consensus       177 ~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~--~~~~-lyv~gG~~~~~~~~~~~  253 (358)
                      . -......++.+++....+.    ...++.++...+.-+.+. +|.... ...+.  -+++ |++.. .+..    ...
T Consensus       365 ~-l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~g~~~~~l~-~~~~~~-v~~~~~s~d~~~l~~~~-ss~~----~P~  432 (741)
T 1yr2_A          365 N-LESVGIAGNRLFASYIHDA----KSQVLAFDLDGKPAGAVS-LPGIGS-ASGLSGRPGDRHAYLSF-SSFT----QPA  432 (741)
T ss_dssp             E-EEEEEEEBTEEEEEEEETT----EEEEEEEETTSCEEEECB-CSSSCE-EEEEECCBTCSCEEEEE-EETT----EEE
T ss_pred             e-EEEEEEECCEEEEEEEECC----EEEEEEEeCCCCceeecc-CCCCeE-EEEeecCCCCCEEEEEE-cCCC----CCC
Confidence            1 1122334778877754332    356888887554444443 222111 11121  2343 43332 1111    256


Q ss_pred             eeEEEECCCCceEEcCC
Q 018336          254 SAESYQLGTGEWKRAEN  270 (358)
Q Consensus       254 ~i~~yd~~~~~W~~~~~  270 (358)
                      .++.||..+++.+.+..
T Consensus       433 ~i~~~d~~tg~~~~l~~  449 (741)
T 1yr2_A          433 TVLALDPATAKTTPWEP  449 (741)
T ss_dssp             EEEEEETTTTEEEECSC
T ss_pred             EEEEEECCCCcEEEEec
Confidence            78999999988777654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=84.43  E-value=17  Score=30.32  Aligned_cols=63  Identities=11%  Similarity=0.304  Sum_probs=34.5

Q ss_pred             CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE--C--CEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          138 GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL--N--GRVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       138 ~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                      +.+++.|+.+       ..+.+||..+.+|..+..+.........+..  +  +.+++.|+.+      ..+.+||..++
T Consensus        67 g~~l~s~s~D-------~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~  133 (297)
T 2pm7_B           67 GTILASCSYD-------GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKEN  133 (297)
T ss_dssp             CSEEEEEETT-------TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSS
T ss_pred             CCEEEEEcCC-------CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCC
Confidence            5667777643       3688999988777554322211111112222  1  4556666543      35788887654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=84.28  E-value=17  Score=30.43  Aligned_cols=126  Identities=14%  Similarity=0.202  Sum_probs=61.2

Q ss_pred             eEEEEeCC-CCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCC-cEEeCCCCCCCcee
Q 018336          103 GVTVFDPV-SLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTR-RWTRGKNMPDNRSF  179 (358)
Q Consensus       103 ~~~~~d~~-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~-~W~~~~~~~~~~~~  179 (358)
                      .+.+||+. ...|......+.       ....+.. ++.||+...        ...+++||+... .|..-.+  ... .
T Consensus       118 ~l~~~d~~g~~~~~~~~~~~~-------~~~~~~~~~g~l~vgt~--------~~~l~~~d~~g~~~~~~~~~--~~~-~  179 (330)
T 3hxj_A          118 HLYAINTDGTEKWRFKTKKAI-------YATPIVSEDGTIYVGSN--------DNYLYAINPDGTEKWRFKTN--DAI-T  179 (330)
T ss_dssp             EEEEECTTSCEEEEEECSSCC-------CSCCEECTTSCEEEECT--------TSEEEEECTTSCEEEEEECS--SCC-C
T ss_pred             EEEEEcCCCCEEEEEcCCCce-------eeeeEEcCCCEEEEEcC--------CCEEEEECCCCCEeEEEecC--CCc-e
Confidence            57889987 334654332111       1122333 667777432        246888998722 2544321  111 1


Q ss_pred             eeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECC-CCceEecCCCccCcCceeEEEE-CCEEEEEeCcccCCCCceeeeeE
Q 018336          180 FAAGE-LNGRVIIAGGHDENKTALSSAWAYDLI-KDEWTELARMTQERDECEAVVI-GSEFWVVSGYKTERQGIFDESAE  256 (358)
Q Consensus       180 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~-t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~~~i~  256 (358)
                      .+.+. .++.+|+..         ..+++||.. ...|+......  . ....+.. +|.||+...         ...+.
T Consensus       180 ~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~~~~~--~-~~~~~~~~~g~l~v~t~---------~~gl~  238 (330)
T 3hxj_A          180 SAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFYAGYW--T-VTRPAISEDGTIYVTSL---------DGHLY  238 (330)
T ss_dssp             SCCEECTTCCEEEES---------SSEEEECTTSCEEEEECCSSC--C-CSCCEECTTSCEEEEET---------TTEEE
T ss_pred             eeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEccCCc--c-eeceEECCCCeEEEEcC---------CCeEE
Confidence            12223 356777653         348888843 23466443211  1 1122232 457777542         12467


Q ss_pred             EEECCCCc-eEE
Q 018336          257 SYQLGTGE-WKR  267 (358)
Q Consensus       257 ~yd~~~~~-W~~  267 (358)
                      +||+.... |..
T Consensus       239 ~~~~~g~~~~~~  250 (330)
T 3hxj_A          239 AINPDGTEKWRF  250 (330)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EECCCCCEeEEe
Confidence            77765443 543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=84.17  E-value=28  Score=32.69  Aligned_cols=72  Identities=22%  Similarity=0.330  Sum_probs=46.5

Q ss_pred             eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceEecCCCccCc------CceeEEEECCEEEEEeCcccCCCCcee
Q 018336          181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKD--EWTELARMTQER------DECEAVVIGSEFWVVSGYKTERQGIFD  252 (358)
Q Consensus       181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~~------~~~~~~~~~~~lyv~gG~~~~~~~~~~  252 (358)
                      +.++.++.+|+....       ..++++|.+++  .|+.-...+...      .....++.+++||+...         .
T Consensus        63 ~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~---------d  126 (582)
T 1flg_A           63 QAIVSDGVIYVTASY-------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL---------D  126 (582)
T ss_dssp             CCEEETTEEEEEETT-------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET---------T
T ss_pred             ccEEECCEEEEEcCC-------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC---------C
Confidence            345679999998542       24999999876  488654332210      11234578899988642         2


Q ss_pred             eeeEEEECCCCc--eEEc
Q 018336          253 ESAESYQLGTGE--WKRA  268 (358)
Q Consensus       253 ~~i~~yd~~~~~--W~~~  268 (358)
                      ..++++|.++++  |+.-
T Consensus       127 g~l~AlD~~TG~~~W~~~  144 (582)
T 1flg_A          127 ASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TEEEEEESSSCCEEEEEE
T ss_pred             CEEEEEECCCCCEEeeec
Confidence            367899998875  8753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=84.04  E-value=17  Score=30.38  Aligned_cols=100  Identities=8%  Similarity=0.006  Sum_probs=50.4

Q ss_pred             cceeEEEECCCCcEEeCCCCCCCceeeeeEEE-CC-EEEEEcCcCCCCCCCCeEEEEECCCCceEe---cCCCccCcCce
Q 018336          154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-NG-RVIIAGGHDENKTALSSAWAYDLIKDEWTE---LARMTQERDEC  228 (358)
Q Consensus       154 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~---~~~~p~~~~~~  228 (358)
                      ...+++||+.+++.+.+.  .... ..+.+.. ++ .+|+....... .....+++|+...+....   +...+... ..
T Consensus       168 ~~~v~~~d~~~g~~~~~~--~~~~-p~gl~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~~~l~~~~~~~~~~~~~-pd  242 (305)
T 3dr2_A          168 HHSVYRLPPDGSPLQRMA--DLDH-PNGLAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRDGALHDRRHFASVPDGL-PD  242 (305)
T ss_dssp             CEEEEEECSSSCCCEEEE--EESS-EEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEEECCSSSC-CC
T ss_pred             CCeEEEEcCCCCcEEEEe--cCCC-CcceEEcCCCCEEEEEecCCcC-CCCCEEEEEEecCCCccCCeEEEECCCCC-CC
Confidence            357999999888876653  1111 1222322 34 58887432110 112578999887654221   11111111 11


Q ss_pred             eEE-EECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEc
Q 018336          229 EAV-VIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRA  268 (358)
Q Consensus       229 ~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~  268 (358)
                      .++ --+|+||+..+          ..|.+||+....-..+
T Consensus       243 gi~~d~~G~lwv~~~----------~gv~~~~~~g~~~~~~  273 (305)
T 3dr2_A          243 GFCVDRGGWLWSSSG----------TGVCVFDSDGQLLGHI  273 (305)
T ss_dssp             SEEECTTSCEEECCS----------SEEEEECTTSCEEEEE
T ss_pred             eEEECCCCCEEEecC----------CcEEEECCCCCEEEEE
Confidence            222 23567777641          2478899966544444

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=83.86  E-value=31  Score=33.01  Aligned_cols=62  Identities=3%  Similarity=-0.148  Sum_probs=32.5

Q ss_pred             eEEEEECCC-CceEecCCC-ccCcC-ceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336          204 SAWAYDLIK-DEWTELARM-TQERD-ECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAE  269 (358)
Q Consensus       204 ~~~~yd~~t-~~W~~~~~~-p~~~~-~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~  269 (358)
                      .++++|..+ +.-+.+... ..... ..... -||+..+++......   ....++.+|+.+++...+.
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~---~~~~i~~~d~~~g~~~~~~  328 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQ---KKLDLVEVTLASNQQRVLA  328 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTS---SEEEEEEEETTTCCEEEEE
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccC---CeEEEEEEECCCCceEEEE
Confidence            788889887 765544321 11111 11122 455544443322111   1467899999988776554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=83.82  E-value=28  Score=32.57  Aligned_cols=92  Identities=11%  Similarity=-0.106  Sum_probs=49.1

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCCCCCcceeEEEECC--CCcEEeCCCCCCCc
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPASYSPVSHVFVYDFT--TRRWTRGKNMPDNR  177 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~~--t~~W~~~~~~~~~~  177 (358)
                      ..+.++|..+++-...-+....      .+.++..  +..+|+.+.        ...+.+||..  +.+  .+..++...
T Consensus       177 ~~V~viD~~t~~v~~~i~~g~~------p~~v~~SpDGr~lyv~~~--------dg~V~viD~~~~t~~--~v~~i~~G~  240 (567)
T 1qks_A          177 GQIALIDGSTYEIKTVLDTGYA------VHISRLSASGRYLFVIGR--------DGKVNMIDLWMKEPT--TVAEIKIGS  240 (567)
T ss_dssp             TEEEEEETTTCCEEEEEECSSC------EEEEEECTTSCEEEEEET--------TSEEEEEETTSSSCC--EEEEEECCS
T ss_pred             CeEEEEECCCCeEEEEEeCCCC------ccceEECCCCCEEEEEcC--------CCeEEEEECCCCCCc--EeEEEecCC
Confidence            4789999998864432222211      1233332  456787653        2479999996  443  233333332


Q ss_pred             eeeeeEEE-----CC-EEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          178 SFFAAGEL-----NG-RVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       178 ~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      .-..++..     ++ .+|+..-      ....+.++|..+.+=
T Consensus       241 ~P~~ia~s~~~~pDGk~l~v~n~------~~~~v~ViD~~t~~~  278 (567)
T 1qks_A          241 EARSIETSKMEGWEDKYAIAGAY------WPPQYVIMDGETLEP  278 (567)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEE------ETTEEEEEETTTCCE
T ss_pred             CCceeEEccccCCCCCEEEEEEc------cCCeEEEEECCCCcE
Confidence            22233333     44 5776632      135688889777543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=83.66  E-value=9.8  Score=35.45  Aligned_cols=99  Identities=13%  Similarity=0.062  Sum_probs=52.9

Q ss_pred             EEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeE
Q 018336          104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAG  183 (358)
Q Consensus       104 ~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~  183 (358)
                      ...||..+++-..+...+.       ......-+++..+++..+...   ...++++|..+.+++.+..-+...  ...+
T Consensus       134 ~~l~d~~~g~~~~l~~~~~-------~~~~~spDG~~la~~~~~~~~---~~~i~~~d~~~g~~~~l~~~~~~~--~~~~  201 (582)
T 3o4h_A          134 VALYALDGGGLRELARLPG-------FGFVSDIRGDLIAGLGFFGGG---RVSLFTSNLSSGGLRVFDSGEGSF--SSAS  201 (582)
T ss_dssp             EEEEEEETTEEEEEEEESS-------CEEEEEEETTEEEEEEEEETT---EEEEEEEETTTCCCEEECCSSCEE--EEEE
T ss_pred             ceEEEccCCcEEEeecCCC-------ceEEECCCCCEEEEEEEcCCC---CeEEEEEcCCCCCceEeecCCCcc--ccce
Confidence            3467888777666543222       112333445444443322111   246999999999888764432221  2222


Q ss_pred             E-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEec
Q 018336          184 E-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTEL  218 (358)
Q Consensus       184 ~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~  218 (358)
                      . -+++.++.+..+.    ...++++|..++..+.+
T Consensus       202 ~SpDG~~l~~~~~~~----~~~i~~~d~~~~~~~~~  233 (582)
T 3o4h_A          202 ISPGMKVTAGLETAR----EARLVTVDPRDGSVEDL  233 (582)
T ss_dssp             ECTTSCEEEEEECSS----CEEEEEECTTTCCEEEC
T ss_pred             ECCCCCEEEEccCCC----eeEEEEEcCCCCcEEEc
Confidence            2 2555444332211    24799999999887733

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=83.59  E-value=20  Score=30.55  Aligned_cols=134  Identities=14%  Similarity=0.232  Sum_probs=62.6

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcE--EeCCCCCCCc-ee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRW--TRGKNMPDNR-SF  179 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W--~~~~~~~~~~-~~  179 (358)
                      .+..||..+.+-...-+....    ........-++.+++.|+.+       ..+.+||..+..-  +....+.... .-
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~d-------~~v~iw~~~~~~~~~~~~~~~~~h~~~v  146 (340)
T 1got_B           78 KLIIWDSYTTNKVHAIPLRSS----WVMTCAYAPSGNYVACGGLD-------NICSIYNLKTREGNVRVSRELAGHTGYL  146 (340)
T ss_dssp             EEEEEETTTCCEEEEEECSSS----CEEEEEECTTSSEEEEEETT-------CEEEEEETTTCSBSCEEEEEEECCSSCE
T ss_pred             cEEEEECCCCCcceEeecCCc----cEEEEEECCCCCEEEEEeCC-------CeEEEEECccCCCcceeEEEecCCCccE
Confidence            577788776653322111110    11111122255666666643       3688888876431  1111111100 01


Q ss_pred             eeeE-EECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE--ECCEEEEEeCcccCCCCceeeeeE
Q 018336          180 FAAG-ELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV--IGSEFWVVSGYKTERQGIFDESAE  256 (358)
Q Consensus       180 ~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~--~~~~lyv~gG~~~~~~~~~~~~i~  256 (358)
                      .+.. .-++. ++.|+.+      ..+.+||..++.-...  +.........+.  -++++++.|+.+        ..+.
T Consensus       147 ~~~~~~~~~~-l~s~s~d------~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d--------~~v~  209 (340)
T 1got_B          147 SCCRFLDDNQ-IVTSSGD------TTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACD--------ASAK  209 (340)
T ss_dssp             EEEEEEETTE-EEEEETT------SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT--------SCEE
T ss_pred             EEEEECCCCc-EEEEECC------CcEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCC--------CcEE
Confidence            1111 23555 4444433      3588999988754321  111111112222  256677777653        3567


Q ss_pred             EEECCCCc
Q 018336          257 SYQLGTGE  264 (358)
Q Consensus       257 ~yd~~~~~  264 (358)
                      .||+.++.
T Consensus       210 ~wd~~~~~  217 (340)
T 1got_B          210 LWDVREGM  217 (340)
T ss_dssp             EEETTTCS
T ss_pred             EEECCCCe
Confidence            88987764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=83.41  E-value=19  Score=30.30  Aligned_cols=65  Identities=14%  Similarity=0.267  Sum_probs=34.7

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++..++.|+.+       ..+.+||..+++-.. +..-..+  -.+.+. -++.+++.|+.+.      .+.+||.....
T Consensus        76 dg~~l~s~s~D-------~~v~~wd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~l~s~s~D~------~i~vwd~~~~~  140 (319)
T 3frx_A           76 DGAYALSASWD-------KTLRLWDVATGETYQRFVGHKSD--VMSVDIDKKASMIISGSRDK------TIKVWTIKGQC  140 (319)
T ss_dssp             TSSEEEEEETT-------SEEEEEETTTTEEEEEEECCSSC--EEEEEECTTSCEEEEEETTS------CEEEEETTSCE
T ss_pred             CCCEEEEEeCC-------CEEEEEECCCCCeeEEEccCCCc--EEEEEEcCCCCEEEEEeCCC------eEEEEECCCCe
Confidence            55666666643       378999998875322 2111111  111112 2456667766543      48888887554


Q ss_pred             eE
Q 018336          215 WT  216 (358)
Q Consensus       215 W~  216 (358)
                      -.
T Consensus       141 ~~  142 (319)
T 3frx_A          141 LA  142 (319)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=83.13  E-value=33  Score=32.81  Aligned_cols=103  Identities=9%  Similarity=0.080  Sum_probs=58.4

Q ss_pred             ceeEEEECCCC--cEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCC---ceEecCCCccCcCcee
Q 018336          155 SHVFVYDFTTR--RWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKD---EWTELARMTQERDECE  229 (358)
Q Consensus       155 ~~~~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~---~W~~~~~~p~~~~~~~  229 (358)
                      ++++++|..+.  .|+.+..-...... .....++.+|+....+.   ....++..|+.+.   .|+.+.+-....  ..
T Consensus       259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~~~~--~~  332 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRDA---PNRRLVTVDAANPGPAHWRDLIPERQQV--LT  332 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEECCCSSC--EE
T ss_pred             cEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCCC---CCCEEEEEeCCCCCccccEEEecCCCCE--EE
Confidence            57888887665  56665432222222 23446788998865432   2357899998763   488764333222  23


Q ss_pred             EEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336          230 AVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAE  269 (358)
Q Consensus       230 ~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~  269 (358)
                      ....++.|++..... .     ...++.+|...+....+.
T Consensus       333 ~s~~g~~lv~~~~~~-g-----~~~l~~~d~~g~~~~~l~  366 (693)
T 3iuj_A          333 VHSGSGYLFAEYMVD-A-----TARVEQFDYEGKRVREVA  366 (693)
T ss_dssp             EEEETTEEEEEEEET-T-----EEEEEEECTTSCEEEEEC
T ss_pred             EEEECCEEEEEEEEC-C-----eeEEEEEECCCCeeEEee
Confidence            334555555543221 1     347888998866555443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=83.07  E-value=20  Score=30.29  Aligned_cols=63  Identities=5%  Similarity=0.084  Sum_probs=36.2

Q ss_pred             CEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE---CCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          187 GRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI---GSEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       187 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~---~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      +.+++.|+.+      ..+.+||..++.-..  .+.........+.+   ++++++.|+.+        ..+..||..++
T Consensus        85 ~~~l~~~~~d------g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~  148 (366)
T 3k26_A           85 HPLLAVAGSR------GIIRIINPITMQCIK--HYVGHGNAINELKFHPRDPNLLLSVSKD--------HALRLWNIQTD  148 (366)
T ss_dssp             CEEEEEEETT------CEEEEECTTTCCEEE--EEESCCSCEEEEEECSSCTTEEEEEETT--------SCEEEEETTTT
T ss_pred             CCEEEEecCC------CEEEEEEchhceEee--eecCCCCcEEEEEECCCCCCEEEEEeCC--------CeEEEEEeecC
Confidence            5677777654      358999988764322  12111112222333   56677777653        35788999877


Q ss_pred             ce
Q 018336          264 EW  265 (358)
Q Consensus       264 ~W  265 (358)
                      +-
T Consensus       149 ~~  150 (366)
T 3k26_A          149 TL  150 (366)
T ss_dssp             EE
T ss_pred             eE
Confidence            54

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=82.98  E-value=22  Score=30.72  Aligned_cols=180  Identities=13%  Similarity=0.009  Sum_probs=91.7

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~  181 (358)
                      .+..+|+.+.+-........     ... .++. -++.+++.++        .+.+.+++..+.................
T Consensus       158 ~i~iwd~~~~~~~~~~~~~~-----~V~-~v~fspdg~~l~s~s--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~  223 (365)
T 4h5i_A          158 IMRIIDPSDLTEKFEIETRG-----EVK-DLHFSTDGKVVAYIT--------GSSLEVISTVTGSCIARKTDFDKNWSLS  223 (365)
T ss_dssp             EEEEEETTTTEEEEEEECSS-----CCC-EEEECTTSSEEEEEC--------SSCEEEEETTTCCEEEEECCCCTTEEEE
T ss_pred             EEEEeECCCCcEEEEeCCCC-----ceE-EEEEccCCceEEecc--------ceeEEEEEeccCcceeeeecCCCCCCEE
Confidence            57788888776543322111     112 2332 2566666654        2357788887776543222221221122


Q ss_pred             e--EEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecC--CCccCcCceeEE--EECCEEEEEeCcccCCCCceeeee
Q 018336          182 A--GELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA--RMTQERDECEAV--VIGSEFWVVSGYKTERQGIFDESA  255 (358)
Q Consensus       182 ~--~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~--~~p~~~~~~~~~--~~~~~lyv~gG~~~~~~~~~~~~i  255 (358)
                      .  ..-++..++.++.+...  ...+..++..........  .+.........+  .-+|++++.|+.+        ..|
T Consensus       224 ~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D--------~~V  293 (365)
T 4h5i_A          224 KINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND--------NSI  293 (365)
T ss_dssp             EEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT--------SCE
T ss_pred             EEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC--------CEE
Confidence            2  22477777777655431  234666777665554322  121111112222  2377888888653        357


Q ss_pred             EEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCC
Q 018336          256 ESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNG  335 (358)
Q Consensus       256 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~  335 (358)
                      ..||..+.+-.  ..+.    ..|...                   ....++.-++++++.|+.+    ..|-++|+..+
T Consensus       294 ~iwd~~~~~~~--~~~~----~gH~~~-------------------V~~v~fSpdg~~laS~S~D----~tvrvw~ip~~  344 (365)
T 4h5i_A          294 ALVKLKDLSMS--KIFK----QAHSFA-------------------ITEVTISPDSTYVASVSAA----NTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTTTEEE--EEET----TSSSSC-------------------EEEEEECTTSCEEEEEETT----SEEEEEECCTT
T ss_pred             EEEECCCCcEE--EEec----CcccCC-------------------EEEEEECCCCCEEEEEeCC----CeEEEEEcCCC
Confidence            88999876532  1111    111111                   1112344578888888765    68888887543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=82.69  E-value=25  Score=31.09  Aligned_cols=146  Identities=11%  Similarity=-0.054  Sum_probs=80.0

Q ss_pred             ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCC--CCCCCceeeeeEE--ECCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336          136 SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGK--NMPDNRSFFAAGE--LNGRVIIAGGHDENKTALSSAWAYDLI  211 (358)
Q Consensus       136 ~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~--~~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~  211 (358)
                      .++.||+.-..       ...++++|+....-+.+.  .+..|   .+.++  .++.||+.--.     ....+++++..
T Consensus       169 ~~~~lY~~d~~-------~~~I~~~~~~g~~~~~l~~~~~~~P---~~iavdp~~g~ly~td~~-----~~~~I~~~~~d  233 (400)
T 3p5b_L          169 IHSNIYWTDSV-------LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWG-----TPAKIKKGGLN  233 (400)
T ss_dssp             TTTEEEEEETT-------TTEEEEECTTTCSEEEEEECSSCCE---EEEEEETTTTEEEEEECS-----SSCCEEEEETT
T ss_pred             cCCceEEEECC-------CCeEEEEeCCCCceEEEEeCCCCCc---ceEEEecccCeEEEEeCC-----CCCEEEEEeCC
Confidence            37899998642       347889998876554442  22222   23333  36889987421     12468888886


Q ss_pred             CCceEecCCCccCcCce-eEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecC
Q 018336          212 KDEWTELARMTQERDEC-EAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREG  288 (358)
Q Consensus       212 t~~W~~~~~~p~~~~~~-~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~  288 (358)
                      ...=+.+..  ...... ++++-  +++||+.-..        ...|+++|++...-..+...+..  .           
T Consensus       234 G~~~~~~~~--~~l~~P~glavd~~~~~lY~aD~~--------~~~I~~~d~dG~~~~~~~~~~~~--l-----------  290 (400)
T 3p5b_L          234 GVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSK--------LHSISSIDVNGGNRKTILEDEKR--L-----------  290 (400)
T ss_dssp             SCSCEEEEC--SSCSCEEEEEEETTTTEEEEEETT--------TTEEEEEETTSCCCEEEEECSST--T-----------
T ss_pred             CCccEEEEE--CCCCceEEEEEEeCCCEEEEEECC--------CCEEEEEeCCCCccEEEEeCCCC--C-----------
Confidence            543232211  111122 33333  6789998532        45788999875433332211000  0           


Q ss_pred             ccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCC
Q 018336          289 KLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNG  335 (358)
Q Consensus       289 ~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~  335 (358)
                                  ....+++..++.||+.--..    ..|+++|..++
T Consensus       291 ------------~~P~gl~v~~~~lywtd~~~----~~V~~~~~~~G  321 (400)
T 3p5b_L          291 ------------AHPFSLAVFEDKVFWTDIIN----EAIFSANRLTG  321 (400)
T ss_dssp             ------------SSEEEEEEETTEEEEEESSS----CSEEEEESSSC
T ss_pred             ------------CCCEEEEEeCCEEEEecCCC----CeEEEEEcCCC
Confidence                        11234566888999886322    46777775544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=82.15  E-value=26  Score=30.86  Aligned_cols=107  Identities=15%  Similarity=0.053  Sum_probs=54.1

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++.+++.|+.+       ..+.+||..+.+-.. +...+....-.+++. -++..++.|+.+      ..+.+||..++.
T Consensus       181 ~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d------g~i~iwd~~~~~  247 (437)
T 3gre_A          181 EKSLLVALTNL-------SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR------GIIDIWDIRFNV  247 (437)
T ss_dssp             SCEEEEEEETT-------SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT------SCEEEEETTTTE
T ss_pred             CCCEEEEEeCC-------CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC------CeEEEEEcCCcc
Confidence            36666666643       479999998766432 211111111112222 256677777654      349999998865


Q ss_pred             eEecCCCccCcCceeEEE-----ECCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          215 WTELARMTQERDECEAVV-----IGSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       215 W~~~~~~p~~~~~~~~~~-----~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      ....-..+....-..++.     -++++++.|+.        -..+..||..+++
T Consensus       248 ~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~--------dg~i~iwd~~~~~  294 (437)
T 3gre_A          248 LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS--------KTFLTIWNFVKGH  294 (437)
T ss_dssp             EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST--------TEEEEEEETTTTE
T ss_pred             EEEEEecCCCCceEEEEeccccCCCccEEEEEcC--------CCcEEEEEcCCCc
Confidence            432211111111111111     13446666654        2357889988765

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=81.26  E-value=41  Score=32.54  Aligned_cols=105  Identities=10%  Similarity=0.208  Sum_probs=59.4

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceE
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWT  216 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  216 (358)
                      ++.|++...         +-+++||+.++++....... ...-......++.|++.-        ...+.+||+.+++++
T Consensus        73 ~g~lWigT~---------~Gl~~yd~~~~~f~~~~~~~-~~~i~~i~~~~g~lWigt--------~~Gl~~~~~~~~~~~  134 (758)
T 3ott_A           73 NTYLYMGTD---------NGILVYNYRADRYEQPETDF-PTDVRTMALQGDTLWLGA--------LNGLYTYQLQSRKLT  134 (758)
T ss_dssp             TTEEEEEET---------TEEEEEETTTTEECCCSCCC-CSCEEEEEEETTEEEEEE--------TTEEEEEETTTCCEE
T ss_pred             CCcEEEEeC---------CCeEEEeCCCCEEECcccCC-CceEEEEEecCCcEEEEc--------CCcceeEeCCCCeEE
Confidence            577887542         35899999998876521111 111112233477777752        125899999998888


Q ss_pred             ecCCCcc--CcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336          217 ELARMTQ--ERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAE  269 (358)
Q Consensus       217 ~~~~~p~--~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~  269 (358)
                      .+...+.  +......+..  +|.|++..          ...+.+||+.++++..+.
T Consensus       135 ~~~~~~~~l~~~~i~~i~~d~~g~lWigt----------~~Gl~~~~~~~~~~~~~~  181 (758)
T 3ott_A          135 SFDTRRNGLPNNTIYSIIRTKDNQIYVGT----------YNGLCRYIPSNGKFEGIP  181 (758)
T ss_dssp             EECHHHHCCSCSCEEEEEECTTCCEEEEE----------TTEEEEEETTTTEEEEEC
T ss_pred             EeccCCCCcCCCeEEEEEEcCCCCEEEEe----------CCCHhhCccCCCceEEec
Confidence            7632111  1111112222  56787742          124678999888876543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=81.21  E-value=34  Score=31.65  Aligned_cols=105  Identities=12%  Similarity=0.136  Sum_probs=51.7

Q ss_pred             cceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCE-EEEEcCcCCCCCCCCeEEEEECCCCceEec---CCCccCcCce
Q 018336          154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGR-VIIAGGHDENKTALSSAWAYDLIKDEWTEL---ARMTQERDEC  228 (358)
Q Consensus       154 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~---~~~p~~~~~~  228 (358)
                      ...++++|..+.+-..+..++..+.-+..+. -+++ +|+.+..      .+.+.++|..+++-...   ...|.+..+.
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~------~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~  374 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN------SNKVAVIDSKDRRLSALVDVGKTPHPGRGA  374 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG------GTEEEEEETTTTEEEEEEECSSSBCCTTCE
T ss_pred             CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC------CCeEEEEECCCCeEEEeeccCCCCCCCCCc
Confidence            3579999987653211111122222222332 2444 5655322      24688899998865432   2233332222


Q ss_pred             eEEEE-CCEEEEEeCcccCCCCceeeeeEEEECCCC-----ceEEcCCc
Q 018336          229 EAVVI-GSEFWVVSGYKTERQGIFDESAESYQLGTG-----EWKRAENA  271 (358)
Q Consensus       229 ~~~~~-~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~-----~W~~~~~~  271 (358)
                      ..+.- ++.+|+.+...       ...|.+||..+.     .|+.+..+
T Consensus       375 ~~~~p~~g~~~~s~~~~-------d~~V~v~d~~~~~~~~~~~~~v~~l  416 (543)
T 1nir_A          375 NFVHPKYGPVWSTSHLG-------DGSISLIGTDPKNHPQYAWKKVAEL  416 (543)
T ss_dssp             EEEETTTEEEEEEEBSS-------SSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred             ccCCCCCccEEEeccCC-------CceEEEEEeCCCCCchhcCeEEEEE
Confidence            22111 36788776432       235667777662     26655544

>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A

Probab=80.95  E-value=28  Score=30.48  Aligned_cols=157  Identities=9%  Similarity=0.053  Sum_probs=82.4

Q ss_pred             eeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcE--EeC----CCCCCCceeeeeE-E--ECCEEEEEcCcCCCCC
Q 018336          130 FCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRW--TRG----KNMPDNRSFFAAG-E--LNGRVIIAGGHDENKT  200 (358)
Q Consensus       130 ~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W--~~~----~~~~~~~~~~~~~-~--~~~~iyv~GG~~~~~~  200 (358)
                      ..+++..++.+|++-|         +.+|+++.....-  ..+    +.+|..   .-++ .  .++++|++-|      
T Consensus       183 fDAv~~~~g~~~fFkg---------~~~Wr~~~~~~~~~p~~I~~~wpgLP~~---iDAa~~~~~~g~~~fFkg------  244 (365)
T 3ba0_A          183 FDAVTTVGNKIFFFKD---------RFFWLKVSERPKTSVNLISSLWPTLPSG---IEAAYEIEARNQVFLFKD------  244 (365)
T ss_dssp             CSCEEEETTEEEEEET---------TEEEECCSSCCCCCEEEHHHHCSSCCSS---CCEEEEEGGGTEEEEEET------
T ss_pred             eeeEEEcCCeEEEEeC---------CEEEEEcCCCccCCccchhhhccCCCCC---ccEEEEecCCCEEEEEeC------
Confidence            3456677999999976         2577776544221  111    233422   2222 2  2789999855      


Q ss_pred             CCCeEEEEECCCCc--e-EecCC--CccCcCce-eEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCcc
Q 018336          201 ALSSAWAYDLIKDE--W-TELAR--MTQERDEC-EAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAW  272 (358)
Q Consensus       201 ~~~~~~~yd~~t~~--W-~~~~~--~p~~~~~~-~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p  272 (358)
                        ...++|+..+..  + +.+..  +|...... +++..  ++++|++-|.          ..++||..+.+-.  ..- 
T Consensus       245 --~~yWr~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG~----------~yw~yd~~~~~v~--~gy-  309 (365)
T 3ba0_A          245 --DKYWLISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDN----------QYWRYDERRQMMD--PGY-  309 (365)
T ss_dssp             --TEEEECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEETT----------EEEEEETTTTEEC--SSC-
T ss_pred             --CEEEEEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEECC----------EEEEEeCCcceec--CCC-
Confidence              346666543211  1 12222  33321122 23333  5789999763          3578988765321  111 


Q ss_pred             ccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336          273 KLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       273 ~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                           ++.-        ...|..+|.  +..+++...++++|++-|      +..|+||..+++-...
T Consensus       310 -----Pk~I--------~~~f~g~p~--~iDaA~~~~~g~~YfFkg------~~ywr~d~~~~~v~~~  356 (365)
T 3ba0_A          310 -----PKLI--------TKNFQGIGP--KIDAVFYSKNKYYYFFQG------SNQFEYDFLLQRITKT  356 (365)
T ss_dssp             -----CCCH--------HHHSTTCCS--SCSEEEEETTTEEEEEET------TEEEEEETTTTEEEEE
T ss_pred             -----Ccch--------hhcCCCCCC--ccceeeEecCCcEEEEeC------CEEEEEECCccEEecc
Confidence                 1110        012333332  222333333889999988      4899999988775543

>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A

Probab=80.91  E-value=5  Score=32.64  Aligned_cols=21  Identities=5%  Similarity=-0.107  Sum_probs=17.9

Q ss_pred             eCCeEEEECCCCCCCCceEEEEECCCC
Q 018336          309 LGGCTLVTGSGYQGGPQEFYVVEGRNG  335 (358)
Q Consensus       309 ~~~~i~v~gG~~~~~~~~i~~yd~~~~  335 (358)
                      .++++|++-|      +.-|+||..++
T Consensus       182 ~~g~~YfFkg------~~Ywr~d~~~~  202 (227)
T 3lp9_A          182 KTNEVYFFKD------DHYARVKVTPX  202 (227)
T ss_dssp             STTEEEEEET------TEEEEEECCSS
T ss_pred             CCceEEEEEC------CEEEEEECCcc
Confidence            5689999988      48999998876

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=80.88  E-value=20  Score=34.51  Aligned_cols=138  Identities=12%  Similarity=-0.024  Sum_probs=72.6

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE--ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS--SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF  179 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~  179 (358)
                      ..+.++|+....-..+.......   +.  .+++  .++.||+..-.      ....++++++....-+.+....  ...
T Consensus       475 ~~I~v~d~dg~~~~~l~~~~~~~---P~--giavDp~~g~ly~td~~------~~~~I~~~~~dG~~~~~l~~~~--l~~  541 (699)
T 1n7d_A          475 GTVSVADTKGVKRKTLFREQGSK---PR--AIVVDPVHGFMYWTDWG------TPAKIKKGGLNGVDIYSLVTEN--IQW  541 (699)
T ss_dssp             SCEEEEBSSSCCEEEECCCSSCC---CC--CEECCSSSSCCEECCCS------SSCCEEBCCSSSCCCCEESCSS--CSS
T ss_pred             CeEEEEecCCCceEEEEeCCCCC---cc--eEEEccCCCcEEEcccC------CCCeEEEEeCCCCCeeEEEeCC--CCC
Confidence            35677777765544442211110   11  2333  36788876421      1246788777543333222111  111


Q ss_pred             e-eeEE--ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCc-cCcCceeEEEECCEEEEEeCcccCCCCceeeee
Q 018336          180 F-AAGE--LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMT-QERDECEAVVIGSEFWVVSGYKTERQGIFDESA  255 (358)
Q Consensus       180 ~-~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p-~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i  255 (358)
                      . ++++  .++.||++-.      ....|+++++....-+.+.... ......++++..+.||+....        ...|
T Consensus       542 PnGlavd~~~~~LY~aD~------~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~--------~~~V  607 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDS------KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII--------NEAI  607 (699)
T ss_dssp             CCCEEECTTTCCEEEEET------TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECST--------TTCE
T ss_pred             ccEEEEeccCCEEEEEec------CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCC--------CCeE
Confidence            2 2333  2578999842      2357999998654434333221 112234566778899999732        3467


Q ss_pred             EEEECCCCceE
Q 018336          256 ESYQLGTGEWK  266 (358)
Q Consensus       256 ~~yd~~~~~W~  266 (358)
                      .++|+.+++-.
T Consensus       608 ~~~d~~~G~~~  618 (699)
T 1n7d_A          608 FSANRLTGSDV  618 (699)
T ss_dssp             EEEETTTEEEE
T ss_pred             EEEEccCCCce
Confidence            88998776543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=80.81  E-value=27  Score=30.25  Aligned_cols=143  Identities=13%  Similarity=0.132  Sum_probs=71.1

Q ss_pred             ceeEEEECCCCcEEeCC--CCCCCceee--eeEE--ECCEEEEEcCcCCCCCCCCeEEEEECCCC--ceEecCCCccCcC
Q 018336          155 SHVFVYDFTTRRWTRGK--NMPDNRSFF--AAGE--LNGRVIIAGGHDENKTALSSAWAYDLIKD--EWTELARMTQERD  226 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~~~--~~~~~~~~~--~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~p~~~~  226 (358)
                      ..+.+||..+.+-...-  ..+......  +.+.  .++.+++.|+.+.      .+.+||+...  .-..+......  
T Consensus       180 ~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~~h~~~--  251 (380)
T 3iz6_a          180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT------TVRLWDLRITSRAVRTYHGHEGD--  251 (380)
T ss_dssp             SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETTTTCCCCEEECCCSSC--
T ss_pred             CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC------eEEEEECCCCCcceEEECCcCCC--
Confidence            36888898887654321  222222111  1122  2567788877653      4888998632  12222111111  


Q ss_pred             ceeEE-EECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEc-CCccccCCCCCceeeeeecCccCceeccccceeece
Q 018336          227 ECEAV-VIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRA-ENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGT  304 (358)
Q Consensus       227 ~~~~~-~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~-~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~  304 (358)
                      -..++ .-+++.++.|+.+        ..+..||..++.-... ...+.........                    ...
T Consensus       252 v~~v~~~p~~~~l~s~s~D--------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~--------------------v~~  303 (380)
T 3iz6_a          252 INSVKFFPDGQRFGTGSDD--------GTCRLFDMRTGHQLQVYNREPDRNDNELPI--------------------VTS  303 (380)
T ss_dssp             CCEEEECTTSSEEEEECSS--------SCEEEEETTTTEEEEEECCCCSSSCCSSCS--------------------CSE
T ss_pred             eEEEEEecCCCeEEEEcCC--------CeEEEEECCCCcEEEEecccccccccccCc--------------------eEE
Confidence            11122 2266777777653        3567899987653322 1111000000000                    111


Q ss_pred             EEEEeCCeEEEECCCCCCCCceEEEEECCCCce
Q 018336          305 CRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKF  337 (358)
Q Consensus       305 ~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W  337 (358)
                      .++..++++++.|+.+    ..|.+||..+.+-
T Consensus       304 ~~~s~~g~~l~~g~~d----g~i~vwd~~~~~~  332 (380)
T 3iz6_a          304 VAFSISGRLLFAGYSN----GDCYVWDTLLAEM  332 (380)
T ss_dssp             EEECSSSSEEEEECTT----SCEEEEETTTCCE
T ss_pred             EEECCCCCEEEEEECC----CCEEEEECCCCce
Confidence            2344567777777654    5788999876653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=80.79  E-value=17  Score=37.45  Aligned_cols=104  Identities=11%  Similarity=0.082  Sum_probs=54.2

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++.+++.|+.+       ..+.+||..+.+-.. +..-.  ..-.+++. -++..++.|+.+      ..+.+||..+++
T Consensus       626 ~~~~l~s~~~d-------~~i~vw~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~~~d------~~v~vwd~~~~~  690 (1249)
T 3sfz_A          626 DGQRIASCGAD-------KTLQVFKAETGEKLLDIKAHE--DEVLCCAFSSDDSYIATCSAD------KKVKIWDSATGK  690 (1249)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETT------SEEEEEETTTCC
T ss_pred             CCCEEEEEeCC-------CeEEEEECCCCCEEEEeccCC--CCEEEEEEecCCCEEEEEeCC------CeEEEEECCCCc
Confidence            56666666643       368999998876432 22111  11112222 256666666543      359999998875


Q ss_pred             eEecCCCccCcCceeEEEE----CCEEEEEeCcccCCCCceeeeeEEEECCCCce
Q 018336          215 WTELARMTQERDECEAVVI----GSEFWVVSGYKTERQGIFDESAESYQLGTGEW  265 (358)
Q Consensus       215 W~~~~~~p~~~~~~~~~~~----~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W  265 (358)
                      -...  +.........+.+    ++.+++.|+.+        ..+..||..+++-
T Consensus       691 ~~~~--~~~~~~~v~~~~~~~~~~~~~l~sg~~d--------~~v~vwd~~~~~~  735 (1249)
T 3sfz_A          691 LVHT--YDEHSEQVNCCHFTNKSNHLLLATGSND--------FFLKLWDLNQKEC  735 (1249)
T ss_dssp             EEEE--EECCSSCEEEEEECSSSSCCEEEEEETT--------SCEEEEETTSSSE
T ss_pred             eEEE--EcCCCCcEEEEEEecCCCceEEEEEeCC--------CeEEEEECCCcch
Confidence            4322  1111122222333    23355555432        3578899887753

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=80.72  E-value=45  Score=32.68  Aligned_cols=133  Identities=12%  Similarity=-0.044  Sum_probs=72.0

Q ss_pred             eEEEEeCCCCCeeecC--CCCCCCCCCCceeEEEE--ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCce
Q 018336          103 GVTVFDPVSLTWDRLG--PVPEYPAGLPLFCQVAS--SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRS  178 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~--~~~~~~~~~~~~~~~~~--~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~  178 (358)
                      .+.++++....-..+.  .+..       -.++++  .++.||+.--.      ....++++++....-+.+..-... .
T Consensus       494 ~I~v~~ldG~~~~~l~~~~l~~-------P~gIaVDp~~g~LYwtD~g------~~~~I~~~~~dG~~~~~lv~~~l~-~  559 (791)
T 3m0c_C          494 TVSVADTKGVKRKTLFRENGSK-------PRAIVVDPVHGFMYWTDWG------TPAKIKKGGLNGVDIYSLVTENIQ-W  559 (791)
T ss_dssp             EEEEEETTSSSEEEEEECTTCC-------EEEEEEETTTTEEEEEECS------SSCEEEEEETTSCCEEEEECSSCS-C
T ss_pred             eEEEEeCCCCeEEEEEeCCCCC-------cceEEEecCCCCEEEecCC------CCCeEEEEecCCCceEEEEeCCCC-C
Confidence            5566666654444332  1222       124444  36899998521      124789998876554444221111 1


Q ss_pred             eeeeEE--ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCC-ccCcCceeEEEECCEEEEEeCcccCCCCceeeee
Q 018336          179 FFAAGE--LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARM-TQERDECEAVVIGSEFWVVSGYKTERQGIFDESA  255 (358)
Q Consensus       179 ~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~-p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i  255 (358)
                      -.++++  .++.||++-.      ....|+++++....=+.+... .......++++.+++||+.-..        ...|
T Consensus       560 P~GLavD~~~~~LYwaD~------~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~--------~~~I  625 (791)
T 3m0c_C          560 PNGITLDLLSGRLYWVDS------KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII--------NEAI  625 (791)
T ss_dssp             EEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETT--------TTEE
T ss_pred             ceEEEEecCCCeEEEEeC------CCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECC--------CCEE
Confidence            123333  3689999832      236799999965433333211 1112234566789999999743        3466


Q ss_pred             EEEECCCC
Q 018336          256 ESYQLGTG  263 (358)
Q Consensus       256 ~~yd~~~~  263 (358)
                      +++|..++
T Consensus       626 ~~~dk~tG  633 (791)
T 3m0c_C          626 FSANRLTG  633 (791)
T ss_dssp             EEEETTTC
T ss_pred             EEEeCCCC
Confidence            77776554

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=80.58  E-value=19  Score=28.32  Aligned_cols=99  Identities=12%  Similarity=0.167  Sum_probs=55.9

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcE-EeCCC--CCCCceeeeeEE--ECCEEEEEcCcCCCCCCCCeEEEEECC
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRW-TRGKN--MPDNRSFFAAGE--LNGRVIIAGGHDENKTALSSAWAYDLI  211 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W-~~~~~--~~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~  211 (358)
                      ++++|++-|         +.+|+|+..+-.- +.+..  +|.......+|.  .++++|++-|        +..+.||..
T Consensus        64 ~~~~yfFkG---------~~yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg--------~~ywr~d~~  126 (195)
T 1itv_A           64 SKKLFFFSG---------RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG--------RRLWRFDVK  126 (195)
T ss_dssp             TCCEEEEET---------TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET--------TEEEEEETT
T ss_pred             CCeEEEEeC---------CEEEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC--------CEEEEEeCC
Confidence            678999977         3688888643111 11222  222111222333  3689999955        458899987


Q ss_pred             CCceEe-----c----CCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          212 KDEWTE-----L----ARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       212 t~~W~~-----~----~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      +++-..     +    +.+|.  .-.++...+|.+|++-|.          ..+.||..+..
T Consensus       127 ~~~~~~gyPr~i~~~w~Gvp~--~idaa~~~~g~~Yffkg~----------~y~~~~~~~~~  176 (195)
T 1itv_A          127 AQMVDPRSASEVDRMFPGVPL--DTHDVFQFREKAYFCQDR----------FYWRVSSRSEL  176 (195)
T ss_dssp             TTEECGGGCEEHHHHSTTSCS--SCSEEEEETTEEEEEETT----------EEEEEECCTTC
T ss_pred             cccccCCCccChhhcCCCCCC--CCCEEEEeCCeEEEEeCC----------EEEEEECCccE
Confidence            754221     1    12222  123455678999999764          34678877664

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=80.26  E-value=25  Score=29.47  Aligned_cols=90  Identities=16%  Similarity=0.181  Sum_probs=46.0

Q ss_pred             eEEEEeC-CCCCeeecCC--CCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc-------EEeCCC
Q 018336          103 GVTVFDP-VSLTWDRLGP--VPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR-------WTRGKN  172 (358)
Q Consensus       103 ~~~~~d~-~~~~W~~~~~--~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~-------W~~~~~  172 (358)
                      .+..||. .+.+-..+..  ...     ... +++...+.+++.|+.+       ..+.+||..+..       .+.+..
T Consensus        80 ~i~~wd~~~~~~~~~~~~~~~~~-----~v~-~l~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~  146 (342)
T 1yfq_A           80 EILKVDLIGSPSFQALTNNEANL-----GIC-RICKYGDDKLIAASWD-------GLIEVIDPRNYGDGVIAVKNLNSNN  146 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCS-----CEE-EEEEETTTEEEEEETT-------SEEEEECHHHHTTBCEEEEESCSSS
T ss_pred             eEEEEEeccCCceEeccccCCCC-----ceE-EEEeCCCCEEEEEcCC-------CeEEEEcccccccccccccCCeeeE
Confidence            6888998 8777655543  221     111 2332325555555532       368888876400       222323


Q ss_pred             CCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCC
Q 018336          173 MPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIK  212 (358)
Q Consensus       173 ~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t  212 (358)
                      +.....-.+++...+. +++|+.+      ..+.+||..+
T Consensus       147 ~~~~~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~  179 (342)
T 1yfq_A          147 TKVKNKIFTMDTNSSR-LIVGMNN------SQVQWFRLPL  179 (342)
T ss_dssp             SSSCCCEEEEEECSSE-EEEEEST------TEEEEEESSC
T ss_pred             EeeCCceEEEEecCCc-EEEEeCC------CeEEEEECCc
Confidence            3322222333334455 4454332      4699999987

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=80.20  E-value=25  Score=29.42  Aligned_cols=85  Identities=12%  Similarity=0.183  Sum_probs=43.6

Q ss_pred             ECCEEEEEcCcCCCCCCCcceeEEEECC-CCcEEeCCCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCC-
Q 018336          136 SQGKLVVMGGWDPASYSPVSHVFVYDFT-TRRWTRGKNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIK-  212 (358)
Q Consensus       136 ~~~~lyv~Gg~~~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t-  212 (358)
                      .++.||+...        ...+++||+. ...|+.....+  . ..+.+.. ++.+|+.. .      ...++.||+.. 
T Consensus       106 ~~~~l~v~t~--------~~~l~~~d~~g~~~~~~~~~~~--~-~~~~~~~~~g~l~vgt-~------~~~l~~~d~~g~  167 (330)
T 3hxj_A          106 FEDILYVTSM--------DGHLYAINTDGTEKWRFKTKKA--I-YATPIVSEDGTIYVGS-N------DNYLYAINPDGT  167 (330)
T ss_dssp             ETTEEEEECT--------TSEEEEECTTSCEEEEEECSSC--C-CSCCEECTTSCEEEEC-T------TSEEEEECTTSC
T ss_pred             ECCEEEEEec--------CCEEEEEcCCCCEEEEEcCCCc--e-eeeeEEcCCCEEEEEc-C------CCEEEEECCCCC
Confidence            3888887542        2368899987 33465432211  1 1122333 56777642 1      14689999872 


Q ss_pred             CceEecCCCccCcCceeEEE-ECCEEEEEe
Q 018336          213 DEWTELARMTQERDECEAVV-IGSEFWVVS  241 (358)
Q Consensus       213 ~~W~~~~~~p~~~~~~~~~~-~~~~lyv~g  241 (358)
                      ..|+.-..  .... ...+. -++.||+..
T Consensus       168 ~~~~~~~~--~~~~-~~~~~d~~g~l~v~t  194 (330)
T 3hxj_A          168 EKWRFKTN--DAIT-SAASIGKDGTIYFGS  194 (330)
T ss_dssp             EEEEEECS--SCCC-SCCEECTTCCEEEES
T ss_pred             EeEEEecC--CCce-eeeEEcCCCEEEEEe
Confidence            23654322  1111 12233 366777654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=80.09  E-value=37  Score=31.39  Aligned_cols=139  Identities=16%  Similarity=0.145  Sum_probs=74.4

Q ss_pred             ceeEEEEC--CCCcEEeCCCCCCCceeeeeEEEC-CEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE
Q 018336          155 SHVFVYDF--TTRRWTRGKNMPDNRSFFAAGELN-GRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV  231 (358)
Q Consensus       155 ~~~~~yd~--~t~~W~~~~~~~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~  231 (358)
                      ..+|..+.  ....- .+...+..+  ......+ +.++++.+...      .+.+||..++.-+.+...+.   .....
T Consensus        90 ~~l~~~~~~~~g~~~-~l~~~~~~~--~~~~s~dg~~~~~~s~~~~------~~~l~d~~~g~~~~l~~~~~---~~~~~  157 (582)
T 3o4h_A           90 HALFKVNTSRPGEEQ-RLEAVKPMR--ILSGVDTGEAVVFTGATED------RVALYALDGGGLRELARLPG---FGFVS  157 (582)
T ss_dssp             EEEEEEETTSTTCCE-ECTTSCSBE--EEEEEECSSCEEEEEECSS------CEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred             eEEEEEeccCCCccc-cccCCCCce--eeeeCCCCCeEEEEecCCC------CceEEEccCCcEEEeecCCC---ceEEE
Confidence            46788887  43332 343333222  2222333 44555543322      24488998887776654333   22334


Q ss_pred             EECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCC
Q 018336          232 VIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGG  311 (358)
Q Consensus       232 ~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~  311 (358)
                      .-||+..++++.....    ...++.+|+.++++..+..-...                           ...-...-+|
T Consensus       158 spDG~~la~~~~~~~~----~~~i~~~d~~~g~~~~l~~~~~~---------------------------~~~~~~SpDG  206 (582)
T 3o4h_A          158 DIRGDLIAGLGFFGGG----RVSLFTSNLSSGGLRVFDSGEGS---------------------------FSSASISPGM  206 (582)
T ss_dssp             EEETTEEEEEEEEETT----EEEEEEEETTTCCCEEECCSSCE---------------------------EEEEEECTTS
T ss_pred             CCCCCEEEEEEEcCCC----CeEEEEEcCCCCCceEeecCCCc---------------------------cccceECCCC
Confidence            5577766655543222    34689999999988876533110                           0011233456


Q ss_pred             eEEEECCCCCCCCceEEEEECCCCceE
Q 018336          312 CTLVTGSGYQGGPQEFYVVEGRNGKFR  338 (358)
Q Consensus       312 ~i~v~gG~~~~~~~~i~~yd~~~~~W~  338 (358)
                      +.++.+..  ++...|+++|.++++.+
T Consensus       207 ~~l~~~~~--~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          207 KVTAGLET--AREARLVTVDPRDGSVE  231 (582)
T ss_dssp             CEEEEEEC--SSCEEEEEECTTTCCEE
T ss_pred             CEEEEccC--CCeeEEEEEcCCCCcEE
Confidence            65553322  21258999999988877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	5e-14
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	1e-08
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	4e-07
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	2e-04
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	3e-10
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	8e-08
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	1e-07
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	2e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	5e-04

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 70.2 bits (170), Expect = 5e-14
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 17/189 (8%)

Query: 105 TVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASY----SPVSHVFVY 160
           T   P    W     +P  PA       +  + G++++   +   ++      ++    +
Sbjct: 2   TAPQPGLGRWGPTIDLPIVPAA----AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSW 57

Query: 161 DFTTRRWTRGKNMPDNRSFFAAGEL---NGRVIIAGGHDENKTALSSAWAYDLIKDEWTE 217
           D +T   +           F  G     NG++++ GG+D  KT       YD   D W  
Sbjct: 58  DPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT-----SLYDSSSDSWIP 112

Query: 218 LARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQC 277
              M   R    +    S+  V +   +   G+F+++ E Y   +  W    NA      
Sbjct: 113 GPDMQVARGYQ-SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPML 171

Query: 278 PRSNVGVGR 286
                G+ R
Sbjct: 172 TADKQGLYR 180

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 54.1 bits (128), Expect = 1e-08
 Identities = 17/129 (13%), Positives = 33/129 (25%), Gaps = 8/129 (6%)

Query: 89  HSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDP 148
            S   +      +  +        + + +               V    G   + GG   
Sbjct: 251 GSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRR 310

Query: 149 AS----YSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL--NGRVIIAGG--HDENKT 200
                  +PV    +Y      + +       R + +   L  +GRV   GG    +  T
Sbjct: 311 GIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTT 370

Query: 201 ALSSAWAYD 209
               A  + 
Sbjct: 371 NHFDAQIFT 379

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 20/179 (11%), Positives = 42/179 (23%), Gaps = 19/179 (10%)

Query: 99  GLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLF------CQVASSQGKLVVMGGWDPASYS 152
             +     +   S      G         P           A     L   G  D     
Sbjct: 200 PSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 259

Query: 153 PVSHVFVY-----DFTTRRWTRGKNMPDNRSF-FAAGELNGRVIIAGGHD-----ENKTA 201
             ++  +        +         +   R+F  +    +G   I GG       E+ T 
Sbjct: 260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 319

Query: 202 LSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESY 258
           + +   Y   +D + +    +  R      ++      +   G            A+ +
Sbjct: 320 VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIF 378

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 32/176 (18%), Positives = 52/176 (29%), Gaps = 14/176 (7%)

Query: 104 VTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFT 163
            + +DP +               +          G++VV GG D           +YD +
Sbjct: 54  TSSWDPSTGIVSDRTVTV-TKHDMFCPGISMDGNGQIVVTGGNDA------KKTSLYDSS 106

Query: 164 TRRWTRGKNMPDNRSFFA-AGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMT 222
           +  W  G +M   R + + A   +GRV   GG         +   Y      WT L    
Sbjct: 107 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAK 166

Query: 223 QE----RDECEAVVIGSEFWVV--SGYKTERQGIFDESAESYQLGTGEWKRAENAW 272
                  D+       +  W+         + G        Y  G+G+ K A    
Sbjct: 167 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQ 222

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (139), Expect = 3e-10
 Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 130 FCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRV 189
              V      +   GG+D      ++ V  YD  T  WT    M   RS        GR+
Sbjct: 188 GAGVCVLHNCIYAAGGYDGQDQ--LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRI 245

Query: 190 IIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV 232
            + GG+D + T L S   YD   D W+E+ RMT  R      V
Sbjct: 246 YVLGGYDGH-TFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 8e-08
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDEN 198
            +   GG+       +S++  Y+ +   W R  ++   RS  A   + G +   GG + +
Sbjct: 6   LIYTAGGYFR---QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNS 62

Query: 199 KTALSSAWAYDLIKDEW 215
               + + A D      
Sbjct: 63  PDGNTDSSALDCYNPMT 79

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 1e-07
 Identities = 22/108 (20%), Positives = 32/108 (29%), Gaps = 3/108 (2%)

Query: 187 GRVI-IAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKT 245
           GR+I  AGG+     +LS   AY+     W  LA +   R      V+G   + V G   
Sbjct: 4   GRLIYTAGGYFRQ--SLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 61

Query: 246 ERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCW 293
              G  D SA                  + +       +         
Sbjct: 62  SPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 109

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 30 LPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDF 66
          LP+E+ L   + L        + V +RW +L      
Sbjct: 4  LPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (84), Expect = 5e-04
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 30 LPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQR 70
          LP EISL+    L +     +  VS+ W ++I+     +++
Sbjct: 9  LPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKK 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.96
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.93
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.89
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.06
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.34
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.26
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.84
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	96.8
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.62
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.45
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	96.27
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	96.27
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.11
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	94.92
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	94.76
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	94.49
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	94.27
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	93.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	93.71
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	93.24
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	92.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	92.8
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.96
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	91.53
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	90.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	90.91
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	90.66
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	90.63
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	90.41
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	89.82
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.8
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.4
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	89.22
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	88.95
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	88.52
d1gena_	200	Gelatinase A (MMP-2), C-terminal domain {Human (Ho	88.51
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	87.81
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	87.79
d1tbga_	340	beta1-subunit of the signal-transducing G protein	87.51
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	86.71
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	86.71
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	86.69
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	86.54
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	86.53
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	86.49
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	86.17
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	85.53
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	85.38
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	84.04
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	83.9
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	80.09

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-36  Score=260.39  Aligned_cols=255  Identities=16%  Similarity=0.199  Sum_probs=211.9

Q ss_pred             ccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCC--CCCC
Q 018336           76 THKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPA--SYSP  153 (358)
Q Consensus        76 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~--~~~~  153 (358)
                      ....+|++||....          ....+++||+.+++|.+++++|.++    .+|++++++++|||+||....  ....
T Consensus         3 ~g~~iyv~GG~~~~----------~~~~~~~yd~~t~~W~~~~~~p~~R----~~~~~~~~~~~iyv~GG~~~~~~~~~~   68 (288)
T d1zgka1           3 VGRLIYTAGGYFRQ----------SLSYLEAYNPSNGTWLRLADLQVPR----SGLAGCVVGGLLYAVGGRNNSPDGNTD   68 (288)
T ss_dssp             CCCCEEEECCBSSS----------BCCCEEEEETTTTEEEECCCCSSCC----BSCEEEEETTEEEEECCEEEETTEEEE
T ss_pred             cCCEEEEECCcCCC----------CCceEEEEECCCCeEEECCCCCCcc----ceeEEEEECCEEEEEeCcccCCCCccc
Confidence            35689999997432          3457999999999999999998865    456888899999999997422  1234


Q ss_pred             cceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE
Q 018336          154 VSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI  233 (358)
Q Consensus       154 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~  233 (358)
                      .+++++||+.+++|+.++++|.+|..|+++.+++++|++||.... ......+.||+.++.|...+.++..|..++++.+
T Consensus        69 ~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  147 (288)
T d1zgka1          69 SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL  147 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             cchhhhcccccccccccccccceecceeccccceeeEEecceecc-cccceeeeeccccCccccccccccccccceeeee
Confidence            679999999999999999999999999999999999999998654 4578899999999999999999999999999999


Q ss_pred             CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee--------------------eecCccCce
Q 018336          234 GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV--------------------GREGKLFCW  293 (358)
Q Consensus       234 ~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--------------------~~d~~~~~W  293 (358)
                      ++++|++||.....   ....++.||+.+++|......+... ........                    .||..+++|
T Consensus       148 ~~~~~~~GG~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~  223 (288)
T d1zgka1         148 NRLLYAVGGFDGTN---RLNSAECYYPERNEWRMITAMNTIR-SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW  223 (288)
T ss_dssp             TTEEEEECCBCSSC---BCCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             eecceEecCccccc---ccceEEEeecccccccccccccccc-ccccccceeeeEEEecCccccccccceeeeeecceee
Confidence            99999999986543   3678999999999999988765422 11111111                    789999999


Q ss_pred             eccccc--eeeceEEEEeCCeEEEECCCCCCCC-ceEEEEECCCCceEee-cCCCCccCc
Q 018336          294 AETEAA--VQFGTCRVELGGCTLVTGSGYQGGP-QEFYVVEGRNGKFRKF-DVPAEYKGL  349 (358)
Q Consensus       294 ~~lp~~--~r~~~~~~~~~~~i~v~gG~~~~~~-~~i~~yd~~~~~W~~~-~~p~~~~~~  349 (358)
                      ..+++.  .|..++++.++++|||+||.+.... +++++||+++++|+++ ++|.++.+|
T Consensus       224 ~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~~~  283 (288)
T d1zgka1         224 TFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGV  283 (288)
T ss_dssp             EECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC
T ss_pred             ecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCcEeE
Confidence            777543  5788999999999999999865544 8899999999999999 899998777

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-28  Score=213.52  Aligned_cols=207  Identities=17%  Similarity=0.218  Sum_probs=172.3

Q ss_pred             ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCC---CCCCCeEEEEECCC
Q 018336          136 SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDEN---KTALSSAWAYDLIK  212 (358)
Q Consensus       136 ~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~t  212 (358)
                      .++.||++||...   ..++++++||+.+++|+.++++|.+|..|+++.++++||++||....   .....++++||+.+
T Consensus         3 ~g~~iyv~GG~~~---~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~   79 (288)
T d1zgka1           3 VGRLIYTAGGYFR---QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT   79 (288)
T ss_dssp             CCCCEEEECCBSS---SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             cCCEEEEECCcCC---CCCceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccc
Confidence            4678999999864   35789999999999999999999999999999999999999997532   23467899999999


Q ss_pred             CceEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeee--------
Q 018336          213 DEWTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGV--------  284 (358)
Q Consensus       213 ~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--------  284 (358)
                      ++|++++++|.+|..++++++++++|++||.....   .....+.||+.+++|.....++... ..++.+..        
T Consensus        80 ~~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~G  155 (288)
T d1zgka1          80 NQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCI---HHNSVERYEPERDEWHLVAPMLTRR-IGVGVAVLNRLLYAVG  155 (288)
T ss_dssp             TEEEECCCCSSCCBTCEEEEETTEEEEECCEETTE---ECCCEEEEETTTTEEEECCCCSSCC-BSCEEEEETTEEEEEC
T ss_pred             ccccccccccceecceeccccceeeEEecceeccc---ccceeeeeccccCcccccccccccc-ccceeeeeeecceEec
Confidence            99999999999999999999999999999986443   5778899999999999988775321 22222211        


Q ss_pred             ------------eecCccCceeccccc--eeeceEEEEeCCeEEEECCCCCCCC-ceEEEEECCCCceEee-cCCCCccC
Q 018336          285 ------------GREGKLFCWAETEAA--VQFGTCRVELGGCTLVTGSGYQGGP-QEFYVVEGRNGKFRKF-DVPAEYKG  348 (358)
Q Consensus       285 ------------~~d~~~~~W~~lp~~--~r~~~~~~~~~~~i~v~gG~~~~~~-~~i~~yd~~~~~W~~~-~~p~~~~~  348 (358)
                                  .||+.+++|...+..  .+..++++..+++|+++||...... +..+.||+.+++|+.+ +.|.++..
T Consensus       156 G~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~  235 (288)
T d1zgka1         156 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA  235 (288)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred             CcccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccc
Confidence                        789999999666554  4577888999999999999876554 8899999999999999 77777665


Q ss_pred             c
Q 018336          349 L  349 (358)
Q Consensus       349 ~  349 (358)
                      +
T Consensus       236 ~  236 (288)
T d1zgka1         236 L  236 (288)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.93  E-value=3.3e-25  Score=199.72  Aligned_cols=277  Identities=16%  Similarity=0.115  Sum_probs=182.1

Q ss_pred             HhHHHhhcChhhHHHHHhcCCccceEEEEeeccCCCCCCCCCCCCCcceEEEEeCCCCCeeecCCCCCCCCCCCceeEEE
Q 018336           55 RRWRQLIQSRDFYYQRKQSGKTHKVACLVQSFPVHSGSGELKPMGLSYGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVA  134 (358)
Q Consensus        55 k~w~~l~~s~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~  134 (358)
                      .+|..++..|.... +......+..++++|+........   .......+..|||.+++|..++.++.++... ...+++
T Consensus         9 g~W~~~~~~p~~~~-~~a~~~~~gkv~v~GG~~~~~~~~---~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~-~~~~~~   83 (387)
T d1k3ia3           9 GRWGPTIDLPIVPA-AAAIEPTSGRVLMWSSYRNDAFGG---SPGGITLTSSWDPSTGIVSDRTVTVTKHDMF-CPGISM   83 (387)
T ss_dssp             CEEEEEEECSSCCS-EEEEETTTTEEEEEEECCCTTTCS---CCCSEEEEEEECTTTCCBCCCEEEECSCCCS-SCEEEE
T ss_pred             CccCCcCCCCcccc-EEEEEeeCCEEEEEEeecCcccCC---CCCceeEEEEEECCCCcEeecCCCCCCcccc-eeEEEE
Confidence            35655554443211 112223355788888864322100   0113345788999999999887776655321 112233


Q ss_pred             EECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE-CCEEEEEcCcCCCCCCCCeEEEEECCCC
Q 018336          135 SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-NGRVIIAGGHDENKTALSSAWAYDLIKD  213 (358)
Q Consensus       135 ~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~  213 (358)
                      ..+++||++||.+      .+++++||+.+++|..+++|+.+|..|+++.+ ++++|++||........+++++||+.++
T Consensus        84 ~~~g~i~v~Gg~~------~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3          84 DGNGQIVVTGGND------AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             CTTSCEEEECSSS------TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ecCCcEEEeecCC------CcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCC
Confidence            4478999999864      35789999999999999999999999998887 6899999998776677889999999999


Q ss_pred             ceEecCCCccCcCc----eeE----------EEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccC---C
Q 018336          214 EWTELARMTQERDE----CEA----------VVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLS---Q  276 (358)
Q Consensus       214 ~W~~~~~~p~~~~~----~~~----------~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~---~  276 (358)
                      +|+.++.++.....    ...          ...+|++|++||.        ...++.||+.+..|.....++...   .
T Consensus       158 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (387)
T d1k3ia3         158 TWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS--------TAMNWYYTSGSGDVKSAGKRQSNRGVAP  229 (387)
T ss_dssp             EEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS--------SEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred             ceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc--------CCcEEecCcccCcEeeccccccCcccCc
Confidence            99998765433211    111          1224556665553        456788999999998776543211   0


Q ss_pred             CCCceee-----------e----------------------eecCccCceeccccc--eeeceEEEEe-CCeEEEECCCC
Q 018336          277 CPRSNVG-----------V----------------------GREGKLFCWAETEAA--VQFGTCRVEL-GGCTLVTGSGY  320 (358)
Q Consensus       277 ~~~~~~~-----------~----------------------~~d~~~~~W~~lp~~--~r~~~~~~~~-~~~i~v~gG~~  320 (358)
                      ..+....           +                      .++...+.|..++.+  .|..++++.+ +++|||+||..
T Consensus       230 ~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~  309 (387)
T d1k3ia3         230 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  309 (387)
T ss_dssp             CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             ccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcc
Confidence            1111100           0                      122344456555433  3555555555 78999999976


Q ss_pred             CCCC-------ceEEEEECCCCceEee-cCCCCccCce
Q 018336          321 QGGP-------QEFYVVEGRNGKFRKF-DVPAEYKGLV  350 (358)
Q Consensus       321 ~~~~-------~~i~~yd~~~~~W~~~-~~p~~~~~~~  350 (358)
                      ....       ..+++||+++++|+++ ++|.++..|+
T Consensus       310 ~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs  347 (387)
T d1k3ia3         310 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHS  347 (387)
T ss_dssp             BCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTE
T ss_pred             cCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceE
Confidence            3321       5789999999999999 8888888774

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.89  E-value=4.7e-23  Score=185.44  Aligned_cols=230  Identities=13%  Similarity=0.164  Sum_probs=160.3

Q ss_pred             CCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCC----CCcceeEEEECCCCcEEeCCCCCCCceeeee--
Q 018336          109 PVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASY----SPVSHVFVYDFTTRRWTRGKNMPDNRSFFAA--  182 (358)
Q Consensus       109 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~----~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~--  182 (358)
                      |..++|...+++|..+    ..++++..+++||++||+.....    .....+++||+.+++|..+++++.+|..+++  
T Consensus         6 p~~g~W~~~~~~p~~~----~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~   81 (387)
T d1k3ia3           6 PGLGRWGPTIDLPIVP----AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGI   81 (387)
T ss_dssp             TTSCEEEEEEECSSCC----SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEE
T ss_pred             CCCCccCCcCCCCccc----cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEE
Confidence            7788999988888643    23344555899999999754321    2345689999999999998887777655433  


Q ss_pred             EE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE-CCEEEEEeCcccCCCCceeeeeEEEEC
Q 018336          183 GE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI-GSEFWVVSGYKTERQGIFDESAESYQL  260 (358)
Q Consensus       183 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~-~~~lyv~gG~~~~~~~~~~~~i~~yd~  260 (358)
                      +. .+++||++||.+.     ..+++||+.+++|+.++.++.+|..|.++++ ||++|++||.....  ...++++.||+
T Consensus        82 ~~~~~g~i~v~Gg~~~-----~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~--~~~~~v~~yd~  154 (387)
T d1k3ia3          82 SMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGG--VFEKNGEVYSP  154 (387)
T ss_dssp             EECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSS--SCCCCEEEEET
T ss_pred             EEecCCcEEEeecCCC-----cceeEecCccCcccccccccccccccceeeecCCceeeeccccccc--cccceeeeecC
Confidence            33 3789999998664     4689999999999999999999999888866 78999999975432  34778999999


Q ss_pred             CCCceEEcCCccccCCCCC-----------c-----------------eeeeeecCccCceeccccce---------eec
Q 018336          261 GTGEWKRAENAWKLSQCPR-----------S-----------------NVGVGREGKLFCWAETEAAV---------QFG  303 (358)
Q Consensus       261 ~~~~W~~~~~~p~~~~~~~-----------~-----------------~~~~~~d~~~~~W~~lp~~~---------r~~  303 (358)
                      .+++|+.++.++.......           .                 .....||..+..|...+...         +..
T Consensus       155 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (387)
T d1k3ia3         155 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG  234 (387)
T ss_dssp             TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred             CCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccc
Confidence            9999999876432110000           0                 00116788888884443221         122


Q ss_pred             eEE--EEeCCeEEEECCCCCCCC----ceEEE-----EECCCCceEee-cCCCCccCc
Q 018336          304 TCR--VELGGCTLVTGSGYQGGP----QEFYV-----VEGRNGKFRKF-DVPAEYKGL  349 (358)
Q Consensus       304 ~~~--~~~~~~i~v~gG~~~~~~----~~i~~-----yd~~~~~W~~~-~~p~~~~~~  349 (358)
                      +++  ...+++||++||......    .....     ++...+.|..+ .+|.++..+
T Consensus       235 ~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~  292 (387)
T d1k3ia3         235 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFH  292 (387)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSC
T ss_pred             cEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccc
Confidence            222  235799999999765432    12222     23445668887 788887666

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=8.3e-11  Score=67.56  Aligned_cols=40  Identities=23%  Similarity=0.405  Sum_probs=37.5

Q ss_pred             CCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhh
Q 018336           27 VPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDF   66 (358)
Q Consensus        27 ~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f   66 (358)
                      |..||+|++.+||++||.+++.+++.|||+|+.+..++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            5689999999999999999999999999999999988764

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.7e-07  Score=65.82  Aligned_cols=46  Identities=24%  Similarity=0.385  Sum_probs=42.4

Q ss_pred             CCCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHHHHH
Q 018336           26 LVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQRK   71 (358)
Q Consensus        26 ~~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~~~~   71 (358)
                      .|+.||+||+.+||+.|+..++.++.+|||+|+.+..++.+.+...
T Consensus        18 ~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~   63 (102)
T d2ovrb1          18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKC   63 (102)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            5788999999999999999999999999999999999999876543

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=1.3e-07  Score=66.00  Aligned_cols=44  Identities=30%  Similarity=0.547  Sum_probs=38.4

Q ss_pred             CCCCCcHHHHHHHhccCCcchhhhHHhhcHhHHHhhc-ChhhHHH
Q 018336           26 LVPGLPEEISLECLTRLHYSTHRVATRVSRRWRQLIQ-SRDFYYQ   69 (358)
Q Consensus        26 ~~~~Lp~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~-s~~f~~~   69 (358)
                      .++.||+|++++||+.|+.+++.+++.|||+|+.++. ++.+.+.
T Consensus         5 ~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~   49 (100)
T d1nexb1           5 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKK   49 (100)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHH
T ss_pred             chhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            3567999999999999999999999999999999885 5676543

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=4e-06  Score=60.16  Aligned_cols=43  Identities=19%  Similarity=0.373  Sum_probs=38.7

Q ss_pred             CCCCc----HHHHHHHhccCCcchhhhHHhhcHhHHHhhcChhhHHH
Q 018336           27 VPGLP----EEISLECLTRLHYSTHRVATRVSRRWRQLIQSRDFYYQ   69 (358)
Q Consensus        27 ~~~Lp----~d~~~~il~rlp~~~~~~~~~v~k~w~~l~~s~~f~~~   69 (358)
                      ++.||    +||+..||+.|+..++.++.+|||+|+.++.++.+.+.
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~   57 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKK   57 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHH
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            45577    59999999999999999999999999999999988664

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.065  Score=40.82  Aligned_cols=157  Identities=11%  Similarity=0.051  Sum_probs=85.0

Q ss_pred             eEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe------CCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCC
Q 018336          131 CQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR------GKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALS  203 (358)
Q Consensus       131 ~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~------~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~  203 (358)
                      -+++.++|.+|++-|         +.+|+++.....+..      -+.+|... ..+... .++.+|++-|        .
T Consensus        12 DAv~~~~g~~y~Fkg---------~~~wr~~~~~~~~~p~~i~~~w~~lp~~I-DAAf~~~~~~~~yffkg--------~   73 (192)
T d1pexa_          12 DAITSLRGETMIFKD---------RFFWRLHPQQVDAELFLTKSFWPELPNRI-DAAYEHPSHDLIFIFRG--------R   73 (192)
T ss_dssp             SEEEEETTEEEEEET---------TEEEEECSSSSCCEEEEHHHHCTTSCSSC-CEEEEETTTTEEEEEET--------T
T ss_pred             EEEEEcCCeEEEEEC---------CEEEEEcCCCCCCcccchhhhCcCCCCcc-cceEEEcCCCEEEEEcC--------C
Confidence            367788999999976         256666654433321      13344322 111111 2678888855        3


Q ss_pred             eEEEEECCCCce---EecCC--CccCcCceeEEE---ECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccC
Q 018336          204 SAWAYDLIKDEW---TELAR--MTQERDECEAVV---IGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLS  275 (358)
Q Consensus       204 ~~~~yd~~t~~W---~~~~~--~p~~~~~~~~~~---~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~  275 (358)
                      .+++|+..+-..   +.+..  +|.......++.   .++++|++-|.          ..+.||..++.-..  ..|   
T Consensus        74 ~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~----------~y~~y~~~~~~~~~--~~p---  138 (192)
T d1pexa_          74 KFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN----------QVWRYDDTNHIMDK--DYP---  138 (192)
T ss_dssp             EEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT----------EEEEEETTTTEECS--SCC---
T ss_pred             EEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCC----------EEEEEcCccccccC--CCc---
Confidence            577787544332   22322  222222222332   36889999764          34788877653211  110   


Q ss_pred             CCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceEee
Q 018336          276 QCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFRKF  340 (358)
Q Consensus       276 ~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~~~  340 (358)
                         +.        -.+.|..+|..+.   ++...++.+|++-|      +..++||..+++=...
T Consensus       139 ---k~--------I~~~w~gvp~~vd---Aa~~~~g~~YfF~g------~~y~r~~~~~~~v~~~  183 (192)
T d1pexa_         139 ---RL--------IEEDFPGIGDKVD---AVYEKNGYIYFFNG------PIQFEYSIWSNRIVRV  183 (192)
T ss_dssp             ---CB--------HHHHSTTSCSCCS---EEEEETTEEEEEET------TEEEEEETTTTEEEEE
T ss_pred             ---EE--------HhhcCCCCCCCce---EEEEeCCEEEEEEC------CEEEEEeCCcCeEccC
Confidence               00        0123444443322   23457999999988      5899999888764443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.62  E-value=0.057  Score=44.25  Aligned_cols=186  Identities=12%  Similarity=0.067  Sum_probs=98.1

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCC--C--c
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPD--N--R  177 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~--~--~  177 (358)
                      ..++.+|+.+++-... .+|..     ....+...++.+++...         +.+..||+.+++++.+.....  +  |
T Consensus        40 ~~I~r~d~~~g~~~~~-~~~~~-----~~~i~~~~dg~l~va~~---------~gl~~~d~~tg~~~~l~~~~~~~~~~~  104 (295)
T d2ghsa1          40 RELHELHLASGRKTVH-ALPFM-----GSALAKISDSKQLIASD---------DGLFLRDTATGVLTLHAELESDLPGNR  104 (295)
T ss_dssp             TEEEEEETTTTEEEEE-ECSSC-----EEEEEEEETTEEEEEET---------TEEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred             CEEEEEECCCCeEEEE-ECCCC-----cEEEEEecCCCEEEEEe---------CccEEeecccceeeEEeeeecCCCccc
Confidence            4788999998865433 23331     12223344677776532         369999999999988754332  2  3


Q ss_pred             eeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE--E-CCEEEEEeCcccCCCCceeee
Q 018336          178 SFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV--I-GSEFWVVSGYKTERQGIFDES  254 (358)
Q Consensus       178 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~--~-~~~lyv~gG~~~~~~~~~~~~  254 (358)
                      .+...+--+|.+|+.-.....  ....-..|....++.+.+..   .........  - ++.+|+....        ...
T Consensus       105 ~nd~~vd~~G~iw~~~~~~~~--~~~~g~l~~~~~g~~~~~~~---~~~~~Ng~~~s~d~~~l~~~dt~--------~~~  171 (295)
T d2ghsa1         105 SNDGRMHPSGALWIGTMGRKA--ETGAGSIYHVAKGKVTKLFA---DISIPNSICFSPDGTTGYFVDTK--------VNR  171 (295)
T ss_dssp             EEEEEECTTSCEEEEEEETTC--CTTCEEEEEEETTEEEEEEE---EESSEEEEEECTTSCEEEEEETT--------TCE
T ss_pred             ceeeEECCCCCEEEEeccccc--cccceeEeeecCCcEEEEee---ccCCcceeeecCCCceEEEeecc--------cce
Confidence            333333346777775432221  12334455555565554431   111112222  2 3347777532        346


Q ss_pred             eEEEECCCC--ce----EEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEE--CCCCCCCCce
Q 018336          255 AESYQLGTG--EW----KRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVT--GSGYQGGPQE  326 (358)
Q Consensus       255 i~~yd~~~~--~W----~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~--gG~~~~~~~~  326 (358)
                      |++|+....  ..    ......+..    ..                    .-...++-.+|.||+.  +|      ..
T Consensus       172 I~~~~~d~~~~~~~~~~~~~~~~~~~----~g--------------------~pdG~~vD~~GnlWva~~~~------g~  221 (295)
T d2ghsa1         172 LMRVPLDARTGLPTGKAEVFIDSTGI----KG--------------------GMDGSVCDAEGHIWNARWGE------GA  221 (295)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTS----SS--------------------EEEEEEECTTSCEEEEEETT------TE
T ss_pred             eeEeeecccccccccceEEEeccCcc----cc--------------------cccceEEcCCCCEEeeeeCC------Cc
Confidence            777776432  11    111111100    00                    0111234457889987  34      47


Q ss_pred             EEEEECCCCceEeecCCCC
Q 018336          327 FYVVEGRNGKFRKFDVPAE  345 (358)
Q Consensus       327 i~~yd~~~~~W~~~~~p~~  345 (358)
                      |.+||++.+...++.+|..
T Consensus       222 V~~~dp~G~~~~~i~lP~~  240 (295)
T d2ghsa1         222 VDRYDTDGNHIARYEVPGK  240 (295)
T ss_dssp             EEEECTTCCEEEEEECSCS
T ss_pred             eEEecCCCcEeeEecCCCC
Confidence            9999999888888888754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.45  E-value=0.025  Score=45.69  Aligned_cols=94  Identities=17%  Similarity=0.078  Sum_probs=51.2

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCcee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSF  179 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~  179 (358)
                      ..+.++|+.+++....-+....      .+.++..  +.+||+.+..       .+.+.+||..+.+-...  ++....-
T Consensus        12 ~~v~v~D~~t~~~~~~i~~g~~------p~~va~spdG~~l~v~~~~-------~~~i~v~d~~t~~~~~~--~~~~~~~   76 (301)
T d1l0qa2          12 DNISVIDVTSNKVTATIPVGSN------PMGAVISPDGTKVYVANAH-------SNDVSIIDTATNNVIAT--VPAGSSP   76 (301)
T ss_dssp             TEEEEEETTTTEEEEEEECSSS------EEEEEECTTSSEEEEEEGG-------GTEEEEEETTTTEEEEE--EECSSSE
T ss_pred             CEEEEEECCCCeEEEEEECCCC------ceEEEEeCCCCEEEEEECC-------CCEEEEEECCCCceeee--eeccccc
Confidence            3688999999976544333221      1234333  3568877653       34799999988764332  1222222


Q ss_pred             eeeEEE-C-CEEEEEcCcCCCCCCCCeEEEEECCCCceE
Q 018336          180 FAAGEL-N-GRVIIAGGHDENKTALSSAWAYDLIKDEWT  216 (358)
Q Consensus       180 ~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  216 (358)
                      +..+.. + ..+++.+..+      ..+.+++..+++..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  109 (301)
T d1l0qa2          77 QGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVA  109 (301)
T ss_dssp             EEEEECTTSSEEEEEETTT------TEEEEEETTTTEEE
T ss_pred             ccccccccccccccccccc------ceeeecccccceee
Confidence            333332 3 3455544221      35777788776544

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.15  Score=38.76  Aligned_cols=155  Identities=10%  Similarity=0.037  Sum_probs=85.3

Q ss_pred             eeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe--C----CCCCCCceeeeeEEE--CCEEEEEcCcCCCCCC
Q 018336          130 FCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR--G----KNMPDNRSFFAAGEL--NGRVIIAGGHDENKTA  201 (358)
Q Consensus       130 ~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~--~----~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~  201 (358)
                      +-+++..++.+|++-|.         .+|..+........  +    +.+|....  ++...  ++++|++-|       
T Consensus        14 fDAv~~~~G~~y~Fkg~---------~~wr~~~~~~~~~p~~i~~~w~glp~~ID--AAf~~~~~~~~yfFkG-------   75 (195)
T d1su3a2          14 FDAITTIRGEVMFFKDR---------FYMRTNPFYPEVELNFISVFWPQLPNGLE--AAYEFADRDEVRFFKG-------   75 (195)
T ss_dssp             CSEEEEETTEEEEEETT---------EEEECCTTSSSCEEEEGGGTCTTSCSSCC--EEEEEGGGTEEEEEET-------
T ss_pred             EeEEEEcCCeEEEEeCC---------EEEEeeCCCCccCccchHhhCcCCCCccc--ceEEecCCcEEEEECC-------
Confidence            34777889999999772         35555544433321  1    23333321  22223  588999865       


Q ss_pred             CCeEEEEECCCCc---eEecC---CCccCcCceeEE-EE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCcc
Q 018336          202 LSSAWAYDLIKDE---WTELA---RMTQERDECEAV-VI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAW  272 (358)
Q Consensus       202 ~~~~~~yd~~t~~---W~~~~---~~p~~~~~~~~~-~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p  272 (358)
                       ...++|+..+..   -+.+.   .+|.......++ ..  ++++|++-|.          ..+.||..+++-  -..-|
T Consensus        76 -~~y~~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~----------~y~ry~~~~~~v--d~gyP  142 (195)
T d1su3a2          76 -NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN----------KYWRYDEYKRSM--DPGYP  142 (195)
T ss_dssp             -TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT----------EEEEEETTTTEE--CSSCS
T ss_pred             -cEEEEEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCC----------EEEEEeccCccc--cCCcc
Confidence             457888753321   12221   233332222333 32  5789999764          347898887531  11111


Q ss_pred             ccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCceE
Q 018336          273 KLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGKFR  338 (358)
Q Consensus       273 ~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~W~  338 (358)
                            +.        -.+.|..+|..+  . ++...++++|++-|      +..|+||..+++=.
T Consensus       143 ------k~--------I~~~w~Gvp~~i--D-AAf~~~g~~YfFkg------~~y~r~~~~~~~v~  185 (195)
T d1su3a2         143 ------KM--------IAHDFPGIGHKV--D-AVFMKDGFFYFFHG------TRQYKFDPKTKRIL  185 (195)
T ss_dssp             ------EE--------HHHHSTTSCSCC--S-EEEEETTEEEEEET------TEEEEEETTTTEEE
T ss_pred             ------cc--------cccccCCCCCCc--c-EEEEECCeEEEEEC------CEEEEEeCCcCEEE
Confidence                  10        012355555432  2 23356999999988      48999998876543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.27  E-value=0.23  Score=40.86  Aligned_cols=198  Identities=10%  Similarity=0.027  Sum_probs=102.7

Q ss_pred             ceEEEEeCCCCCeeec-CCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCC-CCCC-Cc
Q 018336          102 YGVTVFDPVSLTWDRL-GPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGK-NMPD-NR  177 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~-~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~-~~~~-~~  177 (358)
                      ..+..+||..+..... .+....      .++++. .++.+|+....+.   .....+..++..+.....+. .... .+
T Consensus        61 g~I~ri~p~g~~~~~~~~~~~~~------p~gla~~~dG~l~va~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~  131 (319)
T d2dg1a1          61 GNIFKINPETKEIKRPFVSHKAN------PAAIKIHKDGRLFVCYLGDF---KSTGGIFAATENGDNLQDIIEDLSTAYC  131 (319)
T ss_dssp             CEEEEECTTTCCEEEEEECSSSS------EEEEEECTTSCEEEEECTTS---SSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred             CEEEEEECCCCeEEEEEeCCCCC------eeEEEECCCCCEEEEecCCC---ccceeEEEEcCCCceeeeeccCCCcccC
Confidence            3688899988764433 222221      123433 3678888742211   12456888888887665432 2222 22


Q ss_pred             eeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecC-CCccCcCceeEEEE--CC-EEEEEeCcccCCCCceee
Q 018336          178 SFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELA-RMTQERDECEAVVI--GS-EFWVVSGYKTERQGIFDE  253 (358)
Q Consensus       178 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~-~~p~~~~~~~~~~~--~~-~lyv~gG~~~~~~~~~~~  253 (358)
                      .+-....-++.+|+..-..........++.+++.....+.+. .+.    ......+  ++ .||+....        .+
T Consensus       132 ~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~----~pnGia~s~dg~~lyvad~~--------~~  199 (319)
T d2dg1a1         132 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS----VANGIALSTDEKVLWVTETT--------AN  199 (319)
T ss_dssp             EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES----SEEEEEECTTSSEEEEEEGG--------GT
T ss_pred             CcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccc----eeeeeeeccccceEEEeccc--------CC
Confidence            222222346788886432222223456888888877766543 222    1223333  34 58888532        34


Q ss_pred             eeEEEECCCCc---eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEE
Q 018336          254 SAESYQLGTGE---WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVV  330 (358)
Q Consensus       254 ~i~~yd~~~~~---W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~y  330 (358)
                      .|++||...+.   .......+... ....                    .-...++-.+|+|||..-..    ..|.+|
T Consensus       200 ~I~~~d~~~~g~~~~~~~~~~~~~~-~~~~--------------------~PdGl~vD~~G~l~Va~~~~----g~V~~~  254 (319)
T d2dg1a1         200 RLHRIALEDDGVTIQPFGATIPYYF-TGHE--------------------GPDSCCIDSDDNLYVAMYGQ----GRVLVF  254 (319)
T ss_dssp             EEEEEEECTTSSSEEEEEEEEEEEC-CSSS--------------------EEEEEEEBTTCCEEEEEETT----TEEEEE
T ss_pred             ceEEEEEcCCCceeccccceeeecc-CCcc--------------------ceeeeeEcCCCCEEEEEcCC----CEEEEE
Confidence            67888876431   11111111000 0000                    00112344578899974322    589999


Q ss_pred             ECCCCceEeecCCCC
Q 018336          331 EGRNGKFRKFDVPAE  345 (358)
Q Consensus       331 d~~~~~W~~~~~p~~  345 (358)
                      |++.+.-.++.+|..
T Consensus       255 ~p~G~~l~~i~~P~~  269 (319)
T d2dg1a1         255 NKRGYPIGQILIPGR  269 (319)
T ss_dssp             CTTSCEEEEEECTTG
T ss_pred             CCCCcEEEEEeCCCc
Confidence            998766777777753

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.61  Score=37.33  Aligned_cols=108  Identities=19%  Similarity=0.322  Sum_probs=58.8

Q ss_pred             EECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          135 SSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       135 ~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ..++..++.|+.+       ..+.+||..+.+-.........  .-.....++.+++.|+.+      ..+.+||..+.+
T Consensus       184 ~~~~~~l~s~~~d-------g~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~~~~l~s~s~d------~~i~iwd~~~~~  248 (342)
T d2ovrb2         184 QFDGIHVVSGSLD-------TSIRVWDVETGNCIHTLTGHQS--LTSGMELKDNILVSGNAD------STVKIWDIKTGQ  248 (342)
T ss_dssp             EECSSEEEEEETT-------SCEEEEETTTCCEEEEECCCCS--CEEEEEEETTEEEEEETT------SCEEEEETTTCC
T ss_pred             cCCCCEEEEEeCC-------CeEEEeecccceeeeEeccccc--ceeEEecCCCEEEEEcCC------CEEEEEeccccc
Confidence            3445555555532       3578888877654322111111  111222344455666543      358999997765


Q ss_pred             eEe-cCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCce
Q 018336          215 WTE-LARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEW  265 (358)
Q Consensus       215 W~~-~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W  265 (358)
                      -.. +............+..++.+++.|+.+        ..|..||+.+++-
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~D--------g~i~iwd~~tg~~  292 (342)
T d2ovrb2         249 CLQTLQGPNKHQSAVTCLQFNKNFVITSSDD--------GTVKLWDLKTGEF  292 (342)
T ss_dssp             EEEEECSTTSCSSCEEEEEECSSEEEEEETT--------SEEEEEETTTCCE
T ss_pred             ccccccccceeeeceeecccCCCeeEEEcCC--------CEEEEEECCCCCE
Confidence            433 332222233334456788888887653        3578899998865

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.92  E-value=0.73  Score=37.28  Aligned_cols=186  Identities=13%  Similarity=0.108  Sum_probs=85.9

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~  181 (358)
                      .+..||..+........+.....  ... +++.. ++..++.+|.+.     ...+.++|..+.+-.  ..+........
T Consensus        81 ~i~iwd~~~~~~~~~~~~~~~~~--~v~-~v~~s~d~~~l~~~~~~~-----~~~~~v~~~~~~~~~--~~l~~h~~~v~  150 (311)
T d1nr0a1          81 NVRIWDTTQTTHILKTTIPVFSG--PVK-DISWDSESKRIAAVGEGR-----ERFGHVFLFDTGTSN--GNLTGQARAMN  150 (311)
T ss_dssp             EEEEEESSSTTCCEEEEEECSSS--CEE-EEEECTTSCEEEEEECCS-----SCSEEEEETTTCCBC--BCCCCCSSCEE
T ss_pred             eEeeeeeeccccccccccccccC--ccc-cccccccccccccccccc-----ccccccccccccccc--ccccccccccc
Confidence            67788888776532222221110  111 22222 455555555321     224567777665432  22221111111


Q ss_pred             eEEE--C-CEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeE
Q 018336          182 AGEL--N-GRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAE  256 (358)
Q Consensus       182 ~~~~--~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~  256 (358)
                      .+.+  + ..+++.|+.+      ..+.+||..+..-...-  .........+..  ++++++.|+.+        ..+.
T Consensus       151 ~v~~~~~~~~~l~sgs~d------~~i~i~d~~~~~~~~~~--~~~~~~i~~v~~~p~~~~l~~~~~d--------~~v~  214 (311)
T d1nr0a1         151 SVDFKPSRPFRIISGSDD------NTVAIFEGPPFKFKSTF--GEHTKFVHSVRYNPDGSLFASTGGD--------GTIV  214 (311)
T ss_dssp             EEEECSSSSCEEEEEETT------SCEEEEETTTBEEEEEE--CCCSSCEEEEEECTTSSEEEEEETT--------SCEE
T ss_pred             cccccccceeeecccccc------ccccccccccccccccc--ccccccccccccCcccccccccccc--------cccc
Confidence            2222  3 3356666543      24888999875433221  111111222333  56677776543        3467


Q ss_pred             EEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          257 SYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       257 ~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                      .||..+++-...-.........+...                   ........+++.++.||.+    ..|.+||..+++
T Consensus       215 ~~d~~~~~~~~~~~~~~~~~~~h~~~-------------------V~~~~~s~~~~~l~tgs~D----g~v~iwd~~t~~  271 (311)
T d1nr0a1         215 LYNGVDGTKTGVFEDDSLKNVAHSGS-------------------VFGLTWSPDGTKIASASAD----KTIKIWNVATLK  271 (311)
T ss_dssp             EEETTTCCEEEECBCTTSSSCSSSSC-------------------EEEEEECTTSSEEEEEETT----SEEEEEETTTTE
T ss_pred             cccccccccccccccccccccccccc-------------------ccccccCCCCCEEEEEeCC----CeEEEEECCCCc
Confidence            88888765332211110000111110                   0111223367777777764    579999998876


Q ss_pred             e
Q 018336          337 F  337 (358)
Q Consensus       337 W  337 (358)
                      -
T Consensus       272 ~  272 (311)
T d1nr0a1         272 V  272 (311)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.76  E-value=0.32  Score=40.60  Aligned_cols=112  Identities=12%  Similarity=0.219  Sum_probs=61.5

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCce-eeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRS-FFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++.++++|+.+       ..+.+||..++++..+..+..... -.+++. -++..++.||.+      ..+.++|+.++.
T Consensus        18 dg~~la~~~~~-------~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D------~~i~vWd~~~~~   84 (371)
T d1k8kc_          18 DRTQIAICPNN-------HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD------RNAYVWTLKGRT   84 (371)
T ss_dssp             TSSEEEEECSS-------SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT------SCEEEEEEETTE
T ss_pred             CCCEEEEEeCC-------CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC------CeEEEEeecccc
Confidence            56666666532       368899999888876654432111 122222 255556666543      248999999999


Q ss_pred             eEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCCceEE
Q 018336          215 WTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTGEWKR  267 (358)
Q Consensus       215 W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~  267 (358)
                      |+..............+.+  +++.+++|+.++      .-.++.++.....+..
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~------~i~i~~~~~~~~~~~~  133 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVC  133 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEE
T ss_pred             cccccccccccccccccccccccccceeecccC------cceeeeeecccccccc
Confidence            9866544433222233332  566666665321      2234445555554443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.49  E-value=1.1  Score=37.15  Aligned_cols=127  Identities=13%  Similarity=0.161  Sum_probs=63.7

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCce-ee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRS-FF  180 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~-~~  180 (358)
                      .+..||..++++..+..+.....  ... +++. -++..++.|+.+       ..+.+||..+++|.....+..... -.
T Consensus        30 ~i~iw~~~~~~~~~~~~l~gH~~--~V~-~l~fsp~~~~l~s~s~D-------~~i~vWd~~~~~~~~~~~~~~~~~~v~   99 (371)
T d1k8kc_          30 EVHIYEKSGNKWVQVHELKEHNG--QVT-GVDWAPDSNRIVTCGTD-------RNAYVWTLKGRTWKPTLVILRINRAAR   99 (371)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSS--CEE-EEEEETTTTEEEEEETT-------SCEEEEEEETTEEEEEEECCCCSSCEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCC--CEE-EEEECCCCCEEEEEECC-------CeEEEEeeccccccccccccccccccc
Confidence            68889998888876654432111  111 2332 255656666543       368999999999876544333222 22


Q ss_pred             eeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCc
Q 018336          181 AAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGY  243 (358)
Q Consensus       181 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~  243 (358)
                      ++.. -++..+++|+.+..    -.++.++...+.+.........+.....+.+  ++++++.|+.
T Consensus       100 ~i~~~p~~~~l~~~s~d~~----i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~  161 (371)
T d1k8kc_         100 CVRWAPNEKKFAVGSGSRV----ISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  161 (371)
T ss_dssp             EEEECTTSSEEEEEETTSS----EEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccceeecccCc----ceeeeeecccccccccccccccccccccccccccccceecccc
Confidence            2222 24555555543321    2344455555545433222222222222222  5666666654

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.76  Score=34.63  Aligned_cols=151  Identities=9%  Similarity=0.089  Sum_probs=81.0

Q ss_pred             eeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEE----e----CCCCCCCceeeeeEE---ECCEEEEEcCcCCC
Q 018336          130 FCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWT----R----GKNMPDNRSFFAAGE---LNGRVIIAGGHDEN  198 (358)
Q Consensus       130 ~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~----~----~~~~~~~~~~~~~~~---~~~~iyv~GG~~~~  198 (358)
                      +-+++.++|.+|++-|         ..+|+|+.......    .    -+.+|..   -.+|.   .++++|++-|    
T Consensus         9 fDAv~~~~G~~y~Fkg---------~~ywr~~~~~~~~~~~P~~I~~~w~glp~~---IDAAf~~~~~~k~yfFkg----   72 (195)
T d1itva_           9 FDAIAEIGNQLYLFKD---------GKYWRFSEGRGSRPQGPFLIADKWPALPRK---LDSVFEEPLSKKLFFFSG----   72 (195)
T ss_dssp             CSEEEEETTEEEEEET---------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS---CSEEEECTTTCCEEEEET----
T ss_pred             cceEEEeCCEEEEEEC---------CEEEEEeCCCCCcCCCcEEeeeecCCCCCC---ccEEEEECCCCEEEEEec----
Confidence            3467788999999976         25777765433221    1    1234432   22222   2578888854    


Q ss_pred             CCCCCeEEEEECCCCce-EecCC--CccCcCceeEE--EECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccc
Q 018336          199 KTALSSAWAYDLIKDEW-TELAR--MTQERDECEAV--VIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWK  273 (358)
Q Consensus       199 ~~~~~~~~~yd~~t~~W-~~~~~--~p~~~~~~~~~--~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~  273 (358)
                          +.+++|+-.+-.- +.+..  +|.......++  .-+|++|++-|.          ..+.||..+++-..  .-|.
T Consensus        73 ----~~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG~----------~y~ryd~~~~~v~~--gyPk  136 (195)
T d1itva_          73 ----RQVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR----------RLWRFDVKAQMVDP--RSAS  136 (195)
T ss_dssp             ----TEEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT----------EEEEEETTTTEECG--GGCE
T ss_pred             ----CEEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEecc----------EEEEEeCCcccccC--CCcc
Confidence                3467776432111 12222  33332222333  236789999664          35889888763221  1110


Q ss_pred             cCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCC
Q 018336          274 LSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNG  335 (358)
Q Consensus       274 ~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~  335 (358)
                      .              -.+.|..+|..+   .++...++.+|++-|      ...|+||..+.
T Consensus       137 ~--------------i~~~w~gvp~~i---daAf~~~~~~Yffkg------~~y~r~~~~~~  175 (195)
T d1itva_         137 E--------------VDRMFPGVPLDT---HDVFQFREKAYFCQD------RFYWRVSSRSE  175 (195)
T ss_dssp             E--------------HHHHSTTSCSSC---SEEEEETTEEEEEET------TEEEEEECCTT
T ss_pred             c--------------hhhhcCCCCCCC---cEEEEeCCcEEEEEC------CEEEEEcCCce
Confidence            0              012343344322   234456889999988      47899987655

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.88  E-value=0.4  Score=36.19  Aligned_cols=139  Identities=19%  Similarity=0.238  Sum_probs=72.7

Q ss_pred             EEEE-ECCEEEEEcCcCCCCCCCcceeEEEECC-----CCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeE
Q 018336          132 QVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFT-----TRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSA  205 (358)
Q Consensus       132 ~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~-----t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~  205 (358)
                      +++. .+|.+|++-|.         -+|..++.     ++.|   +.+|... ..+...-++++|++-|        +.+
T Consensus        12 Av~~~~~G~~y~Fkg~---------~~wr~~~~~p~~Is~~W---pglp~~I-DAaf~~~~~~~yfFkG--------~~y   70 (192)
T d1qhua1          12 ATTLDDNGTMLFFKDE---------FVWKSHRGIRELISERW---KNFIGPV-DAAFRHGHTSVYLIKG--------DKV   70 (192)
T ss_dssp             EEEECTTSCEEEEETT---------EEEETTTTEEEEHHHHS---TTCCSCC-SEEEEETTTEEEEEET--------TEE
T ss_pred             EEEECCCCcEEEEeCC---------EEEEcCCCCeeEHhhhc---CCCCCCc-cEEEEcCCCcEEEEeC--------CEE
Confidence            4444 57899999662         34443321     2234   3344322 1122223578999965        357


Q ss_pred             EEEECCCCce---EecC----CCccCcCceeEEE------ECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCcc
Q 018336          206 WAYDLIKDEW---TELA----RMTQERDECEAVV------IGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAW  272 (358)
Q Consensus       206 ~~yd~~t~~W---~~~~----~~p~~~~~~~~~~------~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p  272 (358)
                      ++|+-.+...   +.+.    .+|....  +++.      -++++|++-|.          ..+.||..++.  ...   
T Consensus        71 w~y~~~~~~~gyPk~i~~~~~glp~~iD--AA~~~~~~~~~~~~~yfFkg~----------~yw~yd~~~~~--~~~---  133 (192)
T d1qhua1          71 WVYTSEKNEKVYPKSLQDEFPGIPFPLD--AAVECHRGECQDEGILFFQGN----------RKWFWDLTTGT--KKE---  133 (192)
T ss_dssp             EEECC-------CEEHHHHSTTCCSSCC--EEEEECBBTBSSSEEEEEETT----------EEEEEETTTTE--EEE---
T ss_pred             EEEeCCccccCCCcChHHhCCCCCCCce--EEEEccccccCCCeEEEEeCC----------eEEEEeCCCCC--ccc---
Confidence            7776543222   1221    2232221  2222      27889999764          34778877652  000   


Q ss_pred             ccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          273 KLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       273 ~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                                        ..|..+|.   .. +++..+|++|++-|      +..|+||..+.+
T Consensus       134 ------------------~~w~gip~---~d-aA~~~~g~~YfFkg------~~y~r~~~~~~~  169 (192)
T d1qhua1         134 ------------------RSWPAVGN---CT-SALRWLGRYYCFQG------NQFLRFNPVSGE  169 (192)
T ss_dssp             ------------------ECCTTSCC---CS-EEEEETTEEEEEET------TEEEEECTTTCC
T ss_pred             ------------------ccccCcCC---cc-eeEEeCCcEEEEEC------CEEEEEcCCcce
Confidence                              12323331   11 33456899999988      589999988865

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=93.71  E-value=1.3  Score=35.43  Aligned_cols=55  Identities=16%  Similarity=0.149  Sum_probs=33.0

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-C-CEEEEEcCcCCCCCCCcceeEEEECCCCcE
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-Q-GKLVVMGGWDPASYSPVSHVFVYDFTTRRW  167 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W  167 (358)
                      ..+.+||..+++=.....++....  +  .+++.. + ..+|+.+..       .+.+.+||..+.+=
T Consensus        18 ~~v~v~D~~t~~~~~t~~~~~~~~--p--~~l~~spDG~~l~v~~~~-------~~~v~~~d~~t~~~   74 (346)
T d1jmxb_          18 NNLHVVDVASDTVYKSCVMPDKFG--P--GTAMMAPDNRTAYVLNNH-------YGDIYGIDLDTCKN   74 (346)
T ss_dssp             TEEEEEETTTTEEEEEEECSSCCS--S--CEEEECTTSSEEEEEETT-------TTEEEEEETTTTEE
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCC--c--ceEEECCCCCEEEEEECC-------CCcEEEEeCccCee
Confidence            478999999996543223332111  1  133333 3 467887653       24799999988754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.24  E-value=0.52  Score=37.46  Aligned_cols=109  Identities=15%  Similarity=0.162  Sum_probs=57.6

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      ++.+++.|+.+       ..+.+||..+.+...+..+.....-.+++. .++..++.|+.+      ..+.+||..++..
T Consensus       147 ~~~~l~~g~~d-------g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~~~  213 (299)
T d1nr0a2         147 DKQFVAVGGQD-------SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS------RKVIPYSVANNFE  213 (299)
T ss_dssp             TSCEEEEEETT-------SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT------SCEEEEEGGGTTE
T ss_pred             ccccccccccc-------ccccccccccccccccccccccccccccccccccccccccccc------ccccccccccccc
Confidence            45566666532       368889988776554332221111112222 245555555543      3489999987655


Q ss_pred             Eec-CCCccCcCceeEE--EECCEEEEEeCcccCCCCceeeeeEEEECCCCceE
Q 018336          216 TEL-ARMTQERDECEAV--VIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWK  266 (358)
Q Consensus       216 ~~~-~~~p~~~~~~~~~--~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~  266 (358)
                      ... ..+.........+  .-++++++.|+.+        ..+..||+.+.+..
T Consensus       214 ~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d--------g~i~iwd~~~~~~~  259 (299)
T d1nr0a2         214 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLD--------NSVIVWNMNKPSDH  259 (299)
T ss_dssp             ESCCCCCCCCSSCEEEEEECTTSSEEEEEETT--------SCEEEEETTCTTSC
T ss_pred             ccccccccccccccccccccccccceEEEcCC--------CEEEEEECCCCCcc
Confidence            432 2222222222222  2366777777653        35788998876543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=92.91  E-value=1.6  Score=38.73  Aligned_cols=119  Identities=13%  Similarity=0.136  Sum_probs=73.3

Q ss_pred             EEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCC--------CceeeeeEEECCEEEEEcCcCCCCCC
Q 018336          132 QVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPD--------NRSFFAAGELNGRVIIAGGHDENKTA  201 (358)
Q Consensus       132 ~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~--------~~~~~~~~~~~~~iyv~GG~~~~~~~  201 (358)
                      .-++.++.||+...        ...++.+|..|.+  |+.-+..+.        .......+..+++||+...       
T Consensus        61 tPiv~~g~vyv~t~--------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------  125 (560)
T d1kv9a2          61 TPLFHDGVIYTSMS--------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------  125 (560)
T ss_dssp             CCEEETTEEEEEEG--------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------
T ss_pred             CCEEECCEEEEECC--------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC-------
Confidence            34678999998865        4578888988874  875433221        1123455667888887632       


Q ss_pred             CCeEEEEECCCC--ceEecC-CCccC-cCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc--eEEc
Q 018336          202 LSSAWAYDLIKD--EWTELA-RMTQE-RDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE--WKRA  268 (358)
Q Consensus       202 ~~~~~~yd~~t~--~W~~~~-~~p~~-~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~~  268 (358)
                      -..++++|..++  .|+.-. ..... ......+++++.+++-+.....   .....+.+||..+++  |+.-
T Consensus       126 ~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~---~~~G~v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         126 DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY---GVRGFVSAYDADTGKLAWRFY  195 (560)
T ss_dssp             TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT---CCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceec---cccceEEEEECCCceEEeeee
Confidence            246899998876  476543 22222 2223445788888765432221   124578999999885  7654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.80  E-value=1.8  Score=34.39  Aligned_cols=104  Identities=11%  Similarity=-0.006  Sum_probs=51.4

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-EC-CEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCc--
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQ-GKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNR--  177 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~-~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~--  177 (358)
                      ..+.++|..+.+=...-+.+....  . -.+++. -+ ..+|+.|..       ...+.+||..+++....-..+.+.  
T Consensus        11 ~~v~v~D~~s~~~~~~i~~~~~~~--~-~~~i~~spDg~~l~v~~~~-------~~~v~v~D~~t~~~~~~~~~~~~~~~   80 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKVITIADAGP--T-PMVPMVAPGGRIAYATVNK-------SESLVKIDLVTGETLGRIDLSTPEER   80 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTT--C-CCCEEECTTSSEEEEEETT-------TTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred             CEEEEEECCCCeEEEEEECCCCCC--C-ccEEEECCCCCEEEEEECC-------CCeEEEEECCCCcEEEEEecCCCccc
Confidence            478899999876433222221111  1 112333 23 467887653       247999999998765432222111  


Q ss_pred             --eeeeeEEE--CCEEEEEcCcCCC-----CCCCCeEEEEECCCCce
Q 018336          178 --SFFAAGEL--NGRVIIAGGHDEN-----KTALSSAWAYDLIKDEW  215 (358)
Q Consensus       178 --~~~~~~~~--~~~iyv~GG~~~~-----~~~~~~~~~yd~~t~~W  215 (358)
                        ..+.++..  +..+|+.+.....     ......+..+|..+..=
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  127 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR  127 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE
Confidence              11122222  3455555421110     01235677888887653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=91.96  E-value=2.2  Score=37.99  Aligned_cols=117  Identities=17%  Similarity=0.181  Sum_probs=71.4

Q ss_pred             EEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCC--------ceeeeeEEECCEEEEEcCcCCCCCCCC
Q 018336          134 ASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDN--------RSFFAAGELNGRVIIAGGHDENKTALS  203 (358)
Q Consensus       134 ~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~--------~~~~~~~~~~~~iyv~GG~~~~~~~~~  203 (358)
                      ++.++.||+...        .+.++.+|..|.+  |+.-+..+..        ....+.+..++++|+..       .-.
T Consensus        74 iv~~g~vyv~t~--------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t-------~~g  138 (573)
T d1kb0a2          74 VVVDGIMYVSAS--------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA-------WDG  138 (573)
T ss_dssp             EEETTEEEEECG--------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC-------TTS
T ss_pred             EEECCEEEEECC--------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEe-------ccc
Confidence            467999999864        4578889988874  7754432211        12235566788888762       124


Q ss_pred             eEEEEECCCCc--eEecC-CCccC--cCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc--eEEc
Q 018336          204 SAWAYDLIKDE--WTELA-RMTQE--RDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE--WKRA  268 (358)
Q Consensus       204 ~~~~yd~~t~~--W~~~~-~~p~~--~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~~  268 (358)
                      .++++|.++++  |+.-. ..+..  ......+++++.+|+-+.....   .....|.+||..+++  |+.-
T Consensus       139 ~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~---~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         139 RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY---GVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT---CCBCEEEEEETTTCCEEEEEE
T ss_pred             ceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccc---cccceEEEEecCCccceeeee
Confidence            68899988775  87532 22221  1122345778888764322111   124578999999985  8743

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=91.53  E-value=2.3  Score=37.71  Aligned_cols=121  Identities=15%  Similarity=0.182  Sum_probs=71.3

Q ss_pred             eeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc--eEecCCCcc--------CcCceeEEEECCEEEEEeCcccCCCC
Q 018336          180 FAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE--WTELARMTQ--------ERDECEAVVIGSEFWVVSGYKTERQG  249 (358)
Q Consensus       180 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--------~~~~~~~~~~~~~lyv~gG~~~~~~~  249 (358)
                      .+-++.++.||+...       ...++++|.+|++  |+.-+..+.        .......+..+++||+...       
T Consensus        60 stPiv~~g~vyv~t~-------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------  125 (560)
T d1kv9a2          60 ATPLFHDGVIYTSMS-------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------  125 (560)
T ss_dssp             CCCEEETTEEEEEEG-------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------
T ss_pred             eCCEEECCEEEEECC-------CCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC-------
Confidence            344678999998743       2568999998874  985432221        1112245677888888752       


Q ss_pred             ceeeeeEEEECCCCc--eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC-Cce
Q 018336          250 IFDESAESYQLGTGE--WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG-PQE  326 (358)
Q Consensus       250 ~~~~~i~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~-~~~  326 (358)
                        -..++++|..+++  |+.-..-+...   ..                     ........++.+++-+...... ...
T Consensus       126 --~g~l~Alda~tG~~~w~~~~~~~~~~---~~---------------------~~~~p~v~~~~vivg~~~~~~~~~G~  179 (560)
T d1kv9a2         126 --DGRLIALDAKTGKAIWSQQTTDPAKP---YS---------------------ITGAPRVVKGKVIIGNGGAEYGVRGF  179 (560)
T ss_dssp             --TSEEEEEETTTCCEEEEEECSCTTSS---CB---------------------CCSCCEEETTEEEECCBCTTTCCBCE
T ss_pred             --CCEEEEEECCCCcEEeccCccCcccc---ee---------------------eeeeeeeecCcccccccceeccccce
Confidence              2357889998874  76543221110   00                     0011255777776643322221 257


Q ss_pred             EEEEECCCCc--eEee
Q 018336          327 FYVVEGRNGK--FRKF  340 (358)
Q Consensus       327 i~~yd~~~~~--W~~~  340 (358)
                      |..||..+.+  |+--
T Consensus       180 v~a~D~~TG~~~W~~~  195 (560)
T d1kv9a2         180 VSAYDADTGKLAWRFY  195 (560)
T ss_dssp             EEEEETTTCCEEEEEE
T ss_pred             EEEEECCCceEEeeee
Confidence            8899999887  7654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=90.94  E-value=1.8  Score=33.81  Aligned_cols=103  Identities=12%  Similarity=0.086  Sum_probs=55.3

Q ss_pred             EEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE-C-CEEEEEcCcCCCCCCCCeEEEEECCCCceE
Q 018336          139 KLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-N-GRVIIAGGHDENKTALSSAWAYDLIKDEWT  216 (358)
Q Consensus       139 ~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~  216 (358)
                      ++||.+..       .+.+.++|+.+++....  ++.+..-++.+.- + ..+|+.++.+      ..+.+||..+++-.
T Consensus         3 ~~yV~~~~-------~~~v~v~D~~t~~~~~~--i~~g~~p~~va~spdG~~l~v~~~~~------~~i~v~d~~t~~~~   67 (301)
T d1l0qa2           3 FAYIANSE-------SDNISVIDVTSNKVTAT--IPVGSNPMGAVISPDGTKVYVANAHS------NDVSIIDTATNNVI   67 (301)
T ss_dssp             EEEEEETT-------TTEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSEEEEEEGGG------TEEEEEETTTTEEE
T ss_pred             EEEEEECC-------CCEEEEEECCCCeEEEE--EECCCCceEEEEeCCCCEEEEEECCC------CEEEEEECCCCcee
Confidence            57887653       34799999999876542  2222222333332 3 4678776433      46999999887543


Q ss_pred             ecCCCccCcCceeEEE-ECCE-EEEEeCcccCCCCceeeeeEEEECCCCceE
Q 018336          217 ELARMTQERDECEAVV-IGSE-FWVVSGYKTERQGIFDESAESYQLGTGEWK  266 (358)
Q Consensus       217 ~~~~~p~~~~~~~~~~-~~~~-lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~  266 (358)
                      .  .++.......++. -++. +++.+..        ...+..+|..+++..
T Consensus        68 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  109 (301)
T d1l0qa2          68 A--TVPAGSSPQGVAVSPDGKQVYVTNMA--------SSTLSVIDTTSNTVA  109 (301)
T ss_dssp             E--EEECSSSEEEEEECTTSSEEEEEETT--------TTEEEEEETTTTEEE
T ss_pred             e--eeeccccccccccccccccccccccc--------cceeeecccccceee
Confidence            2  2222222223332 2444 4444322        124567787776543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=90.91  E-value=1.3  Score=35.77  Aligned_cols=98  Identities=15%  Similarity=0.079  Sum_probs=56.0

Q ss_pred             eeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECC
Q 018336          156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGS  235 (358)
Q Consensus       156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~  235 (358)
                      .+++||..++...+++.  ..+.....-.-+++..+++|....    ..+.+||.+++.-+.+........ .....-++
T Consensus        25 ~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~~~~~~~~~~~v~-~~~~spdg   97 (360)
T d1k32a3          25 QAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGKAEKFEENLGNVF-AMGVDRNG   97 (360)
T ss_dssp             EEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEETTE----EEEEEEETTTCCEEECCCCCCSEE-EEEECTTS
T ss_pred             eEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEcCCC----CEEEEEECCCCcEEEeeCCCceEE-eeeecccc
Confidence            68888888888877642  222222221236765555443322    358999999988777654332211 11123366


Q ss_pred             EEEEEeCcccCCCCceeeeeEEEECCCCceEEc
Q 018336          236 EFWVVSGYKTERQGIFDESAESYQLGTGEWKRA  268 (358)
Q Consensus       236 ~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~  268 (358)
                      +..++++..        ..+..++..+++...+
T Consensus        98 ~~l~~~~~~--------~~~~~~~~~~~~~~~~  122 (360)
T d1k32a3          98 KFAVVANDR--------FEIMTVDLETGKPTVI  122 (360)
T ss_dssp             SEEEEEETT--------SEEEEEETTTCCEEEE
T ss_pred             cccceeccc--------cccccccccccceeee
Confidence            666665442        3567888887765444

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.66  E-value=3.4  Score=33.18  Aligned_cols=66  Identities=15%  Similarity=0.212  Sum_probs=34.5

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceee-eeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFF-AAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++..++.|+.+       ..+.+||....+.+....+....... ..+. -++.+++.++.+      ..+..|+..+++
T Consensus       108 dg~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~~~~~~~  174 (337)
T d1gxra_         108 DGCTLIVGGEA-------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQT  174 (337)
T ss_dssp             TSSEEEEEESS-------SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTE
T ss_pred             CCCEEEEeecc-------cccccccccccccccccccccccccccccccccccccccccccc------cccccccccccc
Confidence            55666666643       36889998776655443332221111 1112 245555555433      348888888765


Q ss_pred             e
Q 018336          215 W  215 (358)
Q Consensus       215 W  215 (358)
                      -
T Consensus       175 ~  175 (337)
T d1gxra_         175 L  175 (337)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.63  E-value=3.5  Score=33.26  Aligned_cols=120  Identities=11%  Similarity=-0.009  Sum_probs=66.5

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeC-CCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRG-KNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      ++.||+..-.       ...++++|+.++..... .+...  .-++++. -++.+|++...+.  .....+..++..+..
T Consensus        50 ~G~Ly~~D~~-------~g~I~ri~p~g~~~~~~~~~~~~--~p~gla~~~dG~l~va~~~~~--~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          50 QGQLFLLDVF-------EGNIFKINPETKEIKRPFVSHKA--NPAAIKIHKDGRLFVCYLGDF--KSTGGIFAATENGDN  118 (319)
T ss_dssp             TSCEEEEETT-------TCEEEEECTTTCCEEEEEECSSS--SEEEEEECTTSCEEEEECTTS--SSCCEEEEECTTSCS
T ss_pred             CCCEEEEECC-------CCEEEEEECCCCeEEEEEeCCCC--CeeEEEECCCCCEEEEecCCC--ccceeEEEEcCCCce
Confidence            5678887532       34799999988765443 22211  1233433 3678998742211  123568888888877


Q ss_pred             eEecCCCccCcCcee--EEEECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcC
Q 018336          215 WTELARMTQERDECE--AVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAE  269 (358)
Q Consensus       215 W~~~~~~p~~~~~~~--~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~  269 (358)
                      ...............  .+.-+|++|+..-.....  .....++.++++....+.+.
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~--~~~g~v~~~~~dg~~~~~~~  173 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYST--NPLGGVYYVSPDFRTVTPII  173 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTT--BCCEEEEEECTTSCCEEEEE
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccc--cCcceeEEEecccceeEEEe
Confidence            655432222122222  233477888875322111  12456888888877766543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.41  E-value=2.1  Score=34.27  Aligned_cols=148  Identities=10%  Similarity=-0.030  Sum_probs=72.2

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCC-CCCCceee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKN-MPDNRSFF  180 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~-~~~~~~~~  180 (358)
                      ..+..||+.+++...+..........+.....+.-++.+|+........   ...-..|....++.+.+.. +..  .+ 
T Consensus        78 ~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~---~~~g~l~~~~~g~~~~~~~~~~~--~N-  151 (295)
T d2ghsa1          78 DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAE---TGAGSIYHVAKGKVTKLFADISI--PN-  151 (295)
T ss_dssp             TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCC---TTCEEEEEEETTEEEEEEEEESS--EE-
T ss_pred             CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEecccccc---ccceeEeeecCCcEEEEeeccCC--cc-
Confidence            3688999999999887654433222122222333367777754322111   2233444444455544321 111  11 


Q ss_pred             eeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCC--ce----EecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCc
Q 018336          181 AAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKD--EW----TELARMTQERDECEAVVI--GSEFWVVSGYKTERQGI  250 (358)
Q Consensus       181 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W----~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~  250 (358)
                      +.+..  +..+|+...      ....++.|+...+  ..    .....++........+.+  +|.||+..-.       
T Consensus       152 g~~~s~d~~~l~~~dt------~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~-------  218 (295)
T d2ghsa1         152 SICFSPDGTTGYFVDT------KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG-------  218 (295)
T ss_dssp             EEEECTTSCEEEEEET------TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET-------
T ss_pred             eeeecCCCceEEEeec------ccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC-------
Confidence            22221  446777732      2356888876422  11    111122222222333333  6678876311       


Q ss_pred             eeeeeEEEECCCCceEEcC
Q 018336          251 FDESAESYQLGTGEWKRAE  269 (358)
Q Consensus       251 ~~~~i~~yd~~~~~W~~~~  269 (358)
                       -..|.+||+.......+.
T Consensus       219 -~g~V~~~dp~G~~~~~i~  236 (295)
T d2ghsa1         219 -EGAVDRYDTDGNHIARYE  236 (295)
T ss_dssp             -TTEEEEECTTCCEEEEEE
T ss_pred             -CCceEEecCCCcEeeEec
Confidence             125789999877666654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=89.82  E-value=4.1  Score=32.79  Aligned_cols=83  Identities=11%  Similarity=-0.047  Sum_probs=44.6

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE--CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCc--
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS--QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNR--  177 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~--  177 (358)
                      ..+..+|+.++.+............ .....++..  ++.+|+..+        .+.+.++|+.+.....+......+  
T Consensus        46 g~I~r~d~~~~~~~~~~~~~~~~~~-g~P~Gl~~~~dg~~l~vad~--------~~~i~~~~~~g~~~~~~~~~~~g~~~  116 (314)
T d1pjxa_          46 GEILRIDLKTGKKTVICKPEVNGYG-GIPAGCQCDRDANQLFVADM--------RLGLLVVQTDGTFEEIAKKDSEGRRM  116 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETTEE-CCEEEEEECSSSSEEEEEET--------TTEEEEEETTSCEEECCSBCTTSCBC
T ss_pred             CEEEEEECCCCcEEEEECCccccCC-CcceeEEEeCCCCEEEEEEC--------CCeEEEEeCCCcEEEEEecccccccc
Confidence            3688999999988665432211100 011233333  356888765        246889999877655443222221  


Q ss_pred             ee-eeeEE-ECCEEEEEc
Q 018336          178 SF-FAAGE-LNGRVIIAG  193 (358)
Q Consensus       178 ~~-~~~~~-~~~~iyv~G  193 (358)
                      .. ...+. -++.+|+..
T Consensus       117 ~~pndl~~d~~G~lyvtd  134 (314)
T d1pjxa_         117 QGCNDCAFDYEGNLWITA  134 (314)
T ss_dssp             BCCCEEEECTTSCEEEEE
T ss_pred             CCCcEEEECCCCCEEEec
Confidence            11 12222 368899863

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=89.80  E-value=4.5  Score=35.78  Aligned_cols=121  Identities=14%  Similarity=0.206  Sum_probs=69.9

Q ss_pred             eeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCc--eEecCCCcc--------CcCceeEEEECCEEEEEeCcccCCCCc
Q 018336          181 AAGELNGRVIIAGGHDENKTALSSAWAYDLIKDE--WTELARMTQ--------ERDECEAVVIGSEFWVVSGYKTERQGI  250 (358)
Q Consensus       181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~p~--------~~~~~~~~~~~~~lyv~gG~~~~~~~~  250 (358)
                      +-++.++.+|+...       ...++++|.+|++  |+.-+..+.        .......+..++++|+...        
T Consensus        72 tPiv~~g~vyv~t~-------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~--------  136 (573)
T d1kb0a2          72 TPVVVDGIMYVSAS-------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--------  136 (573)
T ss_dssp             CCEEETTEEEEECG-------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT--------
T ss_pred             CCEEECCEEEEECC-------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec--------
Confidence            34568999998743       2458999998874  885432221        1112245678899887742        


Q ss_pred             eeeeeEEEECCCCc--eEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC-CceE
Q 018336          251 FDESAESYQLGTGE--WKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG-PQEF  327 (358)
Q Consensus       251 ~~~~i~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~-~~~i  327 (358)
                       -..++++|.++++  |+.-..-...   ....                    ......+.++.+++-+...... ...|
T Consensus       137 -~g~l~alda~tG~~~W~~~~~~~~~---~~~~--------------------~~~~p~v~~~~vivg~~~~~~~~~G~v  192 (573)
T d1kb0a2         137 -DGRLIALDAATGKEVWHQNTFEGQK---GSLT--------------------ITGAPRVFKGKVIIGNGGAEYGVRGYI  192 (573)
T ss_dssp             -TSEEEEEETTTCCEEEEEETTTTCC---SSCB--------------------CCSCCEEETTEEEECCBCTTTCCBCEE
T ss_pred             -ccceeeeccccccceecccCccCCc---ceEE--------------------eecceEEEeccEEEeeccccccccceE
Confidence             2357889998875  7653321100   0000                    0111256778876633221111 2578


Q ss_pred             EEEECCCCc--eEee
Q 018336          328 YVVEGRNGK--FRKF  340 (358)
Q Consensus       328 ~~yd~~~~~--W~~~  340 (358)
                      ..||..+++  |+--
T Consensus       193 ~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         193 TAYDAETGERKWRWF  207 (573)
T ss_dssp             EEEETTTCCEEEEEE
T ss_pred             EEEecCCccceeeee
Confidence            999999887  8754

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.40  E-value=5.8  Score=35.05  Aligned_cols=119  Identities=11%  Similarity=0.140  Sum_probs=70.8

Q ss_pred             EEEECCEEEEEcCcCCCCCCCcceeEEEECC-CC--cEEeCCCCCCCc--------eeeeeEEECCEEEEEcCcCCCCCC
Q 018336          133 VASSQGKLVVMGGWDPASYSPVSHVFVYDFT-TR--RWTRGKNMPDNR--------SFFAAGELNGRVIIAGGHDENKTA  201 (358)
Q Consensus       133 ~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~-t~--~W~~~~~~~~~~--------~~~~~~~~~~~iyv~GG~~~~~~~  201 (358)
                      -++.++.||+..+..       +.++..|.. |.  .|+.-+..+...        ...+.+..+++||+..       .
T Consensus        58 P~v~~g~vyv~t~~~-------~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~-------~  123 (571)
T d2ad6a1          58 PLVIGDMMYVHSAFP-------NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ-------A  123 (571)
T ss_dssp             CEEETTEEEEECSTT-------TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-------T
T ss_pred             CEEECCEEEEecCCC-------CeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEe-------C
Confidence            346799999986521       357777753 33  476543322111        1224567789988762       1


Q ss_pred             CCeEEEEECCCCc--eEe-cCCC-ccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc--eEEc
Q 018336          202 LSSAWAYDLIKDE--WTE-LARM-TQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE--WKRA  268 (358)
Q Consensus       202 ~~~~~~yd~~t~~--W~~-~~~~-p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~~  268 (358)
                      -..+++.|.+|++  |+. +... +.......-+++++++|+-+.....   .....+.+||..+++  |+.-
T Consensus       124 ~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~---~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         124 NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAEL---GVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGG---TCCCEEEEEETTTCCEEEEEE
T ss_pred             CCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccc---cccCcEEEEECCCCcEEEEEe
Confidence            2468999999875  764 3221 2222223456889999876543221   135579999999875  8643

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.22  E-value=1.9  Score=35.28  Aligned_cols=106  Identities=12%  Similarity=0.199  Sum_probs=53.6

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      ++.+++.|+.+       ..+.++|..+.+............ ..... .++...+.|+.+      ..+.++|..+..-
T Consensus       132 ~~~~l~s~~~d-------g~v~i~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~~~  197 (388)
T d1erja_         132 DGKFLATGAED-------RLIRIWDIENRKIVMILQGHEQDI-YSLDYFPSGDKLVSGSGD------RTVRIWDLRTGQC  197 (388)
T ss_dssp             TSSEEEEEETT-------SCEEEEETTTTEEEEEECCCSSCE-EEEEECTTSSEEEEEETT------SEEEEEETTTTEE
T ss_pred             CCCcceecccc-------cccccccccccccccccccccccc-cccccccccccccccccc------eeeeeeecccccc
Confidence            45566666643       358889988876644322111111 11111 233444444322      4588888877654


Q ss_pred             EecCCCccCcCceeEE--EECCEEEEEeCcccCCCCceeeeeEEEECCCCceE
Q 018336          216 TELARMTQERDECEAV--VIGSEFWVVSGYKTERQGIFDESAESYQLGTGEWK  266 (358)
Q Consensus       216 ~~~~~~p~~~~~~~~~--~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~  266 (358)
                      .........  .....  ..++.+++.|+.+        ..+..||..+....
T Consensus       198 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d--------~~i~i~~~~~~~~~  240 (388)
T d1erja_         198 SLTLSIEDG--VTTVAVSPGDGKYIAAGSLD--------RAVRVWDSETGFLV  240 (388)
T ss_dssp             EEEEECSSC--EEEEEECSTTCCEEEEEETT--------SCEEEEETTTCCEE
T ss_pred             ccccccccc--cccccccCCCCCeEEEEcCC--------CeEEEeecccCccc
Confidence            433222111  11122  2255677776543        24678898877654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.95  E-value=4.5  Score=32.17  Aligned_cols=80  Identities=9%  Similarity=0.013  Sum_probs=38.7

Q ss_pred             eeEEEECCCCcEEeCCCCCCCceeeeeEEE--CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEE--
Q 018336          156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGEL--NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAV--  231 (358)
Q Consensus       156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~--  231 (358)
                      .+.+||..+..-..+-  ......-..+.+  ++..++.|+.+      ..+.+||..++.......++........+  
T Consensus        39 ~v~i~~~~~~~~~~~~--~~H~~~v~~~~~sp~g~~latg~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  110 (311)
T d1nr0a1          39 SVYTVPVGSLTDTEIY--TEHSHQTTVAKTSPSGYYCASGDVH------GNVRIWDTTQTTHILKTTIPVFSGPVKDISW  110 (311)
T ss_dssp             EEEEEETTCSSCCEEE--CCCSSCEEEEEECTTSSEEEEEETT------SEEEEEESSSTTCCEEEEEECSSSCEEEEEE
T ss_pred             EEEEEECCCCceeEEE--cCCCCCEEEEEEeCCCCeEeccccC------ceEeeeeeeccccccccccccccCccccccc
Confidence            5888888764322211  111111122222  66777777654      35899999877643222222111111222  


Q ss_pred             EECCEEEEEeCc
Q 018336          232 VIGSEFWVVSGY  243 (358)
Q Consensus       232 ~~~~~lyv~gG~  243 (358)
                      .-++++++.+|.
T Consensus       111 s~d~~~l~~~~~  122 (311)
T d1nr0a1         111 DSESKRIAAVGE  122 (311)
T ss_dssp             CTTSCEEEEEEC
T ss_pred             cccccccccccc
Confidence            225666666654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.52  E-value=4.7  Score=31.79  Aligned_cols=134  Identities=15%  Similarity=0.162  Sum_probs=69.8

Q ss_pred             eeEEEECCCCcEEeCCCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECC
Q 018336          156 HVFVYDFTTRRWTRGKNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGS  235 (358)
Q Consensus       156 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~  235 (358)
                      .+..||..+.+...................++..++.|+.+      ..+.+||..++.-...  +.........+..++
T Consensus       182 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~~~~~--~~~h~~~v~~~~~~~  253 (355)
T d1nexb2         182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD------TTIRIWDLENGELMYT--LQGHTALVGLLRLSD  253 (355)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT------SCEEEEETTTCCEEEE--ECCCSSCCCEEEECS
T ss_pred             eeeeeecccccceeeeeccccccccccccccceeeeccccc------ceEEeeeccccccccc--ccccccccccccccc
Confidence            57888887766543322222222222222344455555433      3488899887654322  111112234456678


Q ss_pred             EEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEE
Q 018336          236 EFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLV  315 (358)
Q Consensus       236 ~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v  315 (358)
                      ++++.|+.+        ..+..||..+..-......     ...                      ....+...++++++
T Consensus       254 ~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~-----~~~----------------------~~~~~~~~~~~~l~  298 (355)
T d1nexb2         254 KFLVSAAAD--------GSIRGWDANDYSRKFSYHH-----TNL----------------------SAITTFYVSDNILV  298 (355)
T ss_dssp             SEEEEECTT--------SEEEEEETTTCCEEEEEEC-----TTC----------------------CCCCEEEECSSEEE
T ss_pred             ceeeeeecc--------cccccccccccceeccccc-----CCc----------------------eEEEEEcCCCCEEE
Confidence            877777653        2567888876542211100     000                      01123456777766


Q ss_pred             ECCCCCCCCceEEEEECCCCce
Q 018336          316 TGSGYQGGPQEFYVVEGRNGKF  337 (358)
Q Consensus       316 ~gG~~~~~~~~i~~yd~~~~~W  337 (358)
                      .|..     ..|.+||.++++.
T Consensus       299 ~g~d-----~~i~vwd~~tg~~  315 (355)
T d1nexb2         299 SGSE-----NQFNIYNLRSGKL  315 (355)
T ss_dssp             EEET-----TEEEEEETTTCCB
T ss_pred             EEeC-----CEEEEEECCCCCE
Confidence            5542     5788999988764

>d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase A (MMP-2), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.51  E-value=3.8  Score=30.68  Aligned_cols=156  Identities=12%  Similarity=0.147  Sum_probs=79.1

Q ss_pred             eeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEE---eC----CCCCCCceeeeeEE-ECCEEEEEcCcCCCCCC
Q 018336          130 FCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWT---RG----KNMPDNRSFFAAGE-LNGRVIIAGGHDENKTA  201 (358)
Q Consensus       130 ~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~---~~----~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~  201 (358)
                      +-+++.+++.+|++-|.         .+|.++.......   .+    +.+|... ..+... .++.+|++-|       
T Consensus        15 fDAv~~~~G~~y~Fkg~---------~~wr~~~~~~~~~~P~~I~~~w~glp~~I-dAA~~~~~~~~~yffkg-------   77 (200)
T d1gena_          15 FDGIAQIRGEIFFFKDR---------FIWRTVTPRDKPMGPLLVATFWPELPEKI-DAVYEAPQEEKAVFFAG-------   77 (200)
T ss_dssp             CSEEEEETTEEEEEETT---------EEEEESSTTSCCEEEEEGGGTCTTSCSCC-SEEEEETTTTEEEEEET-------
T ss_pred             EeEEEecCCeEEEEeCC---------EEEEEcCCCCCCCCcEehhhccCCCCCCc-eEEEEECCCCeEEEecC-------
Confidence            44777889999999762         3454433322211   11    2233322 111111 3678888855       


Q ss_pred             CCeEEEEECCCCce---EecCC--CccCcCceeEE-E--ECCEEEEEeCcccCCCCceeeeeEEEECCCCceEEcCCccc
Q 018336          202 LSSAWAYDLIKDEW---TELAR--MTQERDECEAV-V--IGSEFWVVSGYKTERQGIFDESAESYQLGTGEWKRAENAWK  273 (358)
Q Consensus       202 ~~~~~~yd~~t~~W---~~~~~--~p~~~~~~~~~-~--~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~  273 (358)
                       +..++|+-.+-..   +.+..  +|.......++ .  -++++|++-|.          ..+.||..+++-..-  -  
T Consensus        78 -~~~~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg~----------~y~ryd~~~~~vd~~--y--  142 (200)
T d1gena_          78 -NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD----------KFWRYNEVKKKMDPG--F--  142 (200)
T ss_dssp             -TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT----------EEEEEETTTTEECSS--C--
T ss_pred             -ceEEEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeCc----------EEEEeccccceeccC--c--
Confidence             3477776432111   11211  23222223334 3  26789999764          357898877642110  0  


Q ss_pred             cCCCCCceeeeeecCccCceeccccceeeceEEEE-eCCeEEEECCCCCCCCceEEEEECCCCce
Q 018336          274 LSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVE-LGGCTLVTGSGYQGGPQEFYVVEGRNGKF  337 (358)
Q Consensus       274 ~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~-~~~~i~v~gG~~~~~~~~i~~yd~~~~~W  337 (358)
                          |+.        -.+.|..+|..  ..++... .++++|++-|      +..|.||..+.+.
T Consensus       143 ----Pk~--------I~~~w~gvp~~--idAAf~~~~~g~~Yff~g------~~y~r~d~~~~~~  187 (200)
T d1gena_         143 ----PKL--------IADAWNAIPDN--LDAVVDLQGGGHSYFFKG------AYYLKLENQSLKS  187 (200)
T ss_dssp             ----CEE--------HHHHSSSCCSS--CSEEEECTTTCEEEEEET------TEEEEEETTEEEE
T ss_pred             ----cee--------hhhccCCCCCC--ccEEEEecCCCEEEEEEC------CEEEEEECCceEE
Confidence                000        01234444432  2223332 3689999988      4789998766543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.81  E-value=5.8  Score=32.06  Aligned_cols=134  Identities=16%  Similarity=0.174  Sum_probs=61.2

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~  181 (358)
                      .+..+|....+......-...    ... .+... ++...+.|+.       ...+.++|..+..-..........  ..
T Consensus       144 ~v~i~~~~~~~~~~~~~~h~~----~v~-~~~~~~~~~~~~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~--~~  209 (388)
T d1erja_         144 LIRIWDIENRKIVMILQGHEQ----DIY-SLDYFPSGDKLVSGSG-------DRTVRIWDLRTGQCSLTLSIEDGV--TT  209 (388)
T ss_dssp             CEEEEETTTTEEEEEECCCSS----CEE-EEEECTTSSEEEEEET-------TSEEEEEETTTTEEEEEEECSSCE--EE
T ss_pred             ccccccccccccccccccccc----ccc-cccccccccccccccc-------ceeeeeeecccccccccccccccc--cc
Confidence            467788877765443221111    111 22222 3444455442       246888888776544322211111  11


Q ss_pred             eEE--ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEec-CCCccC----cCceeEEEE--CCEEEEEeCcccCCCCcee
Q 018336          182 AGE--LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTEL-ARMTQE----RDECEAVVI--GSEFWVVSGYKTERQGIFD  252 (358)
Q Consensus       182 ~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~-~~~p~~----~~~~~~~~~--~~~lyv~gG~~~~~~~~~~  252 (358)
                      .+.  .++.+++.|+.+      ..+.+||..+...... ......    ......+.+  +++.++.|+.+        
T Consensus       210 ~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d--------  275 (388)
T d1erja_         210 VAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD--------  275 (388)
T ss_dssp             EEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT--------
T ss_pred             ccccCCCCCeEEEEcCC------CeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC--------
Confidence            222  245666666544      3488999987765432 211111    111112222  55666666542        


Q ss_pred             eeeEEEECCCCc
Q 018336          253 ESAESYQLGTGE  264 (358)
Q Consensus       253 ~~i~~yd~~~~~  264 (358)
                      ..+..||..+..
T Consensus       276 ~~i~iwd~~~~~  287 (388)
T d1erja_         276 RSVKLWNLQNAN  287 (388)
T ss_dssp             SEEEEEEC----
T ss_pred             CcEEEEeccCCc
Confidence            246778876654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=87.79  E-value=5.5  Score=31.70  Aligned_cols=147  Identities=15%  Similarity=0.094  Sum_probs=80.1

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAA  182 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~  182 (358)
                      .++.||...+...+++. +.     +.....-.-+++..++.|...     -..+++||..++.-+.+..-....  ...
T Consensus        25 ~v~v~d~~~~~~~~~~~-~~-----~v~~~~~spDg~~l~~~~~~~-----g~~v~v~d~~~~~~~~~~~~~~~v--~~~   91 (360)
T d1k32a3          25 QAFIQDVSGTYVLKVPE-PL-----RIRYVRRGGDTKVAFIHGTRE-----GDFLGIYDYRTGKAEKFEENLGNV--FAM   91 (360)
T ss_dssp             EEEEECTTSSBEEECSC-CS-----CEEEEEECSSSEEEEEEEETT-----EEEEEEEETTTCCEEECCCCCCSE--EEE
T ss_pred             eEEEEECCCCcEEEccC-CC-----CEEEEEECCCCCEEEEEEcCC-----CCEEEEEECCCCcEEEeeCCCceE--Eee
Confidence            68899999988877632 11     222222223666555544321     236899999998887765433222  222


Q ss_pred             EE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEECCEEEEEeCcccCC--CCceeeeeEEEE
Q 018336          183 GE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVIGSEFWVVSGYKTER--QGIFDESAESYQ  259 (358)
Q Consensus       183 ~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~--~~~~~~~i~~yd  259 (358)
                      +. -+++.+++++..      ..+..++..+.....+..............-+|+.+++++.....  .+.....+..||
T Consensus        92 ~~spdg~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d  165 (360)
T d1k32a3          92 GVDRNGKFAVVANDR------FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  165 (360)
T ss_dssp             EECTTSSEEEEEETT------SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             eecccccccceeccc------cccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeec
Confidence            22 255555554432      358889998877655443333222223334467766655432211  112245678899


Q ss_pred             CCCCceEEc
Q 018336          260 LGTGEWKRA  268 (358)
Q Consensus       260 ~~~~~W~~~  268 (358)
                      ..+++=..+
T Consensus       166 ~~~~~~~~~  174 (360)
T d1k32a3         166 MEGRKIFAA  174 (360)
T ss_dssp             TTTTEEEEC
T ss_pred             cccCceeee
Confidence            887754433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.51  E-value=5.4  Score=31.32  Aligned_cols=94  Identities=11%  Similarity=0.045  Sum_probs=47.1

Q ss_pred             ceeEEEECCCCcEEe-CCCCCCCceeeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEE
Q 018336          155 SHVFVYDFTTRRWTR-GKNMPDNRSFFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVV  232 (358)
Q Consensus       155 ~~~~~yd~~t~~W~~-~~~~~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~  232 (358)
                      ..+.+||..+.+-.. +.....+.  .+++. -++.+++.|+.+      ..+..||..+......-...........+.
T Consensus       206 ~~v~i~d~~~~~~~~~~~~h~~~i--~~v~~~p~~~~l~s~s~d------~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~  277 (340)
T d1tbga_         206 ASAKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDD------ATCRLFDLRADQELMTYSHDNIICGITSVS  277 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCCSSCE--EEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCTTCCSCEEEEE
T ss_pred             ceEEEEECCCCcEEEEEeCCCCCe--EEEEECCCCCEEEEEeCC------CeEEEEeecccccccccccccccCceEEEE
Confidence            367888887665322 21111111  11222 255666666543      348889988765543322222222222222


Q ss_pred             E--CCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          233 I--GSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       233 ~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      +  ++++++.|+.+        ..+..||..+++
T Consensus       278 ~s~~~~~l~~g~~d--------g~i~iwd~~~~~  303 (340)
T d1tbga_         278 FSKSGRLLLAGYDD--------FNCNVWDALKAD  303 (340)
T ss_dssp             ECSSSCEEEEEETT--------SCEEEEETTTCC
T ss_pred             ECCCCCEEEEEECC--------CEEEEEECCCCc
Confidence            2  55666666542        356789987654

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.71  E-value=4.7  Score=29.87  Aligned_cols=94  Identities=16%  Similarity=0.279  Sum_probs=53.9

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcE---EeC----CCCCCCceeeeeEE-----ECCEEEEEcCcCCCCCCCCe
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRW---TRG----KNMPDNRSFFAAGE-----LNGRVIIAGGHDENKTALSS  204 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W---~~~----~~~~~~~~~~~~~~-----~~~~iyv~GG~~~~~~~~~~  204 (358)
                      ++++|++-|         +.+|+|+..+...   +.+    +.+|... ..+...     -++++|++-|        ..
T Consensus        59 ~~~~yfFkG---------~~yw~y~~~~~~~gyPk~i~~~~~glp~~i-DAA~~~~~~~~~~~~~yfFkg--------~~  120 (192)
T d1qhua1          59 HTSVYLIKG---------DKVWVYTSEKNEKVYPKSLQDEFPGIPFPL-DAAVECHRGECQDEGILFFQG--------NR  120 (192)
T ss_dssp             TTEEEEEET---------TEEEEECC-------CEEHHHHSTTCCSSC-CEEEEECBBTBSSSEEEEEET--------TE
T ss_pred             CCcEEEEeC---------CEEEEEeCCccccCCCcChHHhCCCCCCCc-eEEEEccccccCCCeEEEEeC--------Ce
Confidence            679999987         3689997644332   111    2233211 111111     2688999865        35


Q ss_pred             EEEEECCCCc-----eEecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCc
Q 018336          205 AWAYDLIKDE-----WTELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGE  264 (358)
Q Consensus       205 ~~~yd~~t~~-----W~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~  264 (358)
                      .+.||..++.     |..+   |.   ..+++..+|++|++-|.          .-++||..+.+
T Consensus       121 yw~yd~~~~~~~~~~w~gi---p~---~daA~~~~g~~YfFkg~----------~y~r~~~~~~~  169 (192)
T d1qhua1         121 KWFWDLTTGTKKERSWPAV---GN---CTSALRWLGRYYCFQGN----------QFLRFNPVSGE  169 (192)
T ss_dssp             EEEEETTTTEEEEECCTTS---CC---CSEEEEETTEEEEEETT----------EEEEECTTTCC
T ss_pred             EEEEeCCCCCcccccccCc---CC---cceeEEeCCcEEEEECC----------EEEEEcCCcce
Confidence            7889988763     3322   21   23555779999999764          23678777654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.71  E-value=4.5  Score=31.45  Aligned_cols=125  Identities=12%  Similarity=0.095  Sum_probs=61.8

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEE-CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCcee
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASS-QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSF  179 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~  179 (358)
                      ..+..||..+.+...+.......   .. .+++.. ++..++.|+.+       ..+.+||..++.... ...+......
T Consensus       158 g~i~~~d~~~~~~~~~~~~~~~~---~i-~~~~~~~~~~~l~~~~~d-------~~i~~~~~~~~~~~~~~~~~~~h~~~  226 (299)
T d1nr0a2         158 SKVHVYKLSGASVSEVKTIVHPA---EI-TSVAFSNNGAFLVATDQS-------RKVIPYSVANNFELAHTNSWTFHTAK  226 (299)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSS---CE-EEEEECTTSSEEEEEETT-------SCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred             ccccccccccccccccccccccc---cc-cccccccccccccccccc-------cccccccccccccccccccccccccc
Confidence            35777887776654432222111   11 122222 44555555432       368999998876543 2333322211


Q ss_pred             e-eeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCC-CccCcCce-eEEEECCEEEEEeCc
Q 018336          180 F-AAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELAR-MTQERDEC-EAVVIGSEFWVVSGY  243 (358)
Q Consensus       180 ~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~-~p~~~~~~-~~~~~~~~lyv~gG~  243 (358)
                      . +++. .++..++.|+.+.      .+.+||..+.....+.. ........ .++..++..++.||.
T Consensus       227 v~~l~~s~~~~~l~sgs~dg------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~  288 (299)
T d1nr0a2         227 VACVSWSPDNVRLATGSLDN------SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ  288 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTS------CEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEET
T ss_pred             cccccccccccceEEEcCCC------EEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeC
Confidence            1 2222 2566777776543      48999998765443221 11111112 233456666666664

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=86.69  E-value=9.8  Score=33.47  Aligned_cols=120  Identities=13%  Similarity=0.180  Sum_probs=69.1

Q ss_pred             eeEEECCEEEEEcCcCCCCCCCCeEEEEEC-CCC--ceEecCCCccCc--------CceeEEEECCEEEEEeCcccCCCC
Q 018336          181 AAGELNGRVIIAGGHDENKTALSSAWAYDL-IKD--EWTELARMTQER--------DECEAVVIGSEFWVVSGYKTERQG  249 (358)
Q Consensus       181 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~-~t~--~W~~~~~~p~~~--------~~~~~~~~~~~lyv~gG~~~~~~~  249 (358)
                      +-.+.++.+|+..+..      ..++.+|. +|+  .|+.-+..+...        ..-.++..+++||+...       
T Consensus        57 tP~v~~g~vyv~t~~~------~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~-------  123 (571)
T d2ad6a1          57 APLVIGDMMYVHSAFP------NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------  123 (571)
T ss_dssp             CCEEETTEEEEECSTT------TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------
T ss_pred             CCEEECCEEEEecCCC------CeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeC-------
Confidence            3456899999985321      35888886 344  587543222211        11235678899887642       


Q ss_pred             ceeeeeEEEECCCCc--eEE-cCCccccCCCCCceeeeeecCccCceeccccceeeceEEEEeCCeEEEECCCCCCC-Cc
Q 018336          250 IFDESAESYQLGTGE--WKR-AENAWKLSQCPRSNVGVGREGKLFCWAETEAAVQFGTCRVELGGCTLVTGSGYQGG-PQ  325 (358)
Q Consensus       250 ~~~~~i~~yd~~~~~--W~~-~~~~p~~~~~~~~~~~~~~d~~~~~W~~lp~~~r~~~~~~~~~~~i~v~gG~~~~~-~~  325 (358)
                        ...+++.|.++++  |.. +... ......                        ..+-++.+++||+-+...... ..
T Consensus       124 --~g~l~alda~tG~~~w~~~~~~~-~~~~~~------------------------t~~p~v~~~~vivg~~~~~~~~~G  176 (571)
T d2ad6a1         124 --NGHLLALDAKTGKINWEVEVCDP-KVGSTL------------------------TQAPFVAKDTVLMGCSGAELGVRG  176 (571)
T ss_dssp             --TSEEEEEETTTCCEEEEEECCCG-GGTCBC------------------------CSCCEEETTEEEEECBCGGGTCCC
T ss_pred             --CCcEEeeehhhhhhhcccccccc-ccccce------------------------eecCeEeCCeEEEeeccccccccC
Confidence              2357889999885  754 2221 100000                        011266788887754332211 15


Q ss_pred             eEEEEECCCCc--eEee
Q 018336          326 EFYVVEGRNGK--FRKF  340 (358)
Q Consensus       326 ~i~~yd~~~~~--W~~~  340 (358)
                      .|..||..+.+  |+.-
T Consensus       177 ~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         177 AVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEEEETTTCCEEEEEE
T ss_pred             cEEEEECCCCcEEEEEe
Confidence            79999999877  8654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=86.54  E-value=5.3  Score=31.53  Aligned_cols=66  Identities=14%  Similarity=0.125  Sum_probs=39.7

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeeeeEEE-C-CEEEEEcCcCCCCCCCCeEEEEECCCCc
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFAAGEL-N-GRVIIAGGHDENKTALSSAWAYDLIKDE  214 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~  214 (358)
                      +++.++.++.       .+.+.+||..+++-...-.++....-.+++.. + ..+|+.+..+      ..+.+||+.+.+
T Consensus         7 ~~~~l~~~~~-------~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~------~~v~~~d~~t~~   73 (346)
T d1jmxb_           7 GHEYMIVTNY-------PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY------GDIYGIDLDTCK   73 (346)
T ss_dssp             TCEEEEEEET-------TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT------TEEEEEETTTTE
T ss_pred             CCcEEEEEcC-------CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCC------CcEEEEeCccCe
Confidence            5566666653       35899999999875432233333322333332 4 4677776433      469999998874


Q ss_pred             e
Q 018336          215 W  215 (358)
Q Consensus       215 W  215 (358)
                      =
T Consensus        74 ~   74 (346)
T d1jmxb_          74 N   74 (346)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.53  E-value=5.2  Score=31.97  Aligned_cols=65  Identities=22%  Similarity=0.279  Sum_probs=35.0

Q ss_pred             CCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEEECCCC
Q 018336          186 NGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESYQLGTG  263 (358)
Q Consensus       186 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~  263 (358)
                      ++..++.|+.+      ..+.+||....+.+....+.........+.+  ++.+++.++..        ..+..||..++
T Consensus       108 dg~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--------~~i~~~~~~~~  173 (337)
T d1gxra_         108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD--------GNIAVWDLHNQ  173 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT--------SCEEEEETTTT
T ss_pred             CCCEEEEeecc------cccccccccccccccccccccccccccccccccccccccccccc--------ccccccccccc
Confidence            56666666654      3589999887766544433322222222222  45555555432        24677888776


Q ss_pred             c
Q 018336          264 E  264 (358)
Q Consensus       264 ~  264 (358)
                      +
T Consensus       174 ~  174 (337)
T d1gxra_         174 T  174 (337)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.49  E-value=6.1  Score=30.88  Aligned_cols=133  Identities=8%  Similarity=0.048  Sum_probs=70.1

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEE-ECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeCCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVAS-SQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRGKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~  181 (358)
                      .+..+++....+..+.....     .....++. .++.+|+....       ...+.+|++..+.-..............
T Consensus        94 ~i~~~~~~g~~~~~~~~~~~-----~~p~~~avd~~G~i~v~~~~-------~~~~~~~~~~g~~~~~~g~~~~~~~~~~  161 (279)
T d1q7fa_          94 QIQIYNQYGQFVRKFGATIL-----QHPRGVTVDNKGRIIVVECK-------VMRVIIFDQNGNVLHKFGCSKHLEFPNG  161 (279)
T ss_dssp             EEEEECTTSCEEEEECTTTC-----SCEEEEEECTTSCEEEEETT-------TTEEEEECTTSCEEEEEECTTTCSSEEE
T ss_pred             ccccccccccceeecCCCcc-----cccceeccccCCcEEEEeec-------cceeeEeccCCceeecccccccccccce
Confidence            55666666555544432111     11223333 35678887542       3468889887654444322111122222


Q ss_pred             eEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceEecCCCccCcCceeEEEE--CCEEEEEeCcccCCCCceeeeeEEE
Q 018336          182 AGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWTELARMTQERDECEAVVI--GSEFWVVSGYKTERQGIFDESAESY  258 (358)
Q Consensus       182 ~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~p~~~~~~~~~~~--~~~lyv~gG~~~~~~~~~~~~i~~y  258 (358)
                      .+. -++.+|+....      ...+++||...+....+..... ......+.+  +|+|||.....       ...+.+|
T Consensus       162 i~~d~~g~i~v~d~~------~~~V~~~d~~G~~~~~~g~~g~-~~~P~giavD~~G~i~Vad~~~-------~~~v~~f  227 (279)
T d1q7fa_         162 VVVNDKQEIFISDNR------AHCVKVFNYEGQYLRQIGGEGI-TNYPIGVGINSNGEILIADNHN-------NFNLTIF  227 (279)
T ss_dssp             EEECSSSEEEEEEGG------GTEEEEEETTCCEEEEESCTTT-SCSEEEEEECTTCCEEEEECSS-------SCEEEEE
T ss_pred             eeeccceeEEeeecc------ccceeeeecCCceeeeeccccc-ccCCcccccccCCeEEEEECCC-------CcEEEEE
Confidence            222 35789998543      3579999997766665542211 122223333  67799985432       1247788


Q ss_pred             ECC
Q 018336          259 QLG  261 (358)
Q Consensus       259 d~~  261 (358)
                      +++
T Consensus       228 ~~~  230 (279)
T d1q7fa_         228 TQD  230 (279)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            865

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=86.17  E-value=6.6  Score=31.03  Aligned_cols=134  Identities=13%  Similarity=0.065  Sum_probs=68.5

Q ss_pred             ceEEEEeCCCCCeeecCCCCCCCCCCCceeEEE-EECCEEEEEcCcCCCCCCCcceeEE--EECCCCcEEeCCCCCCCce
Q 018336          102 YGVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVA-SSQGKLVVMGGWDPASYSPVSHVFV--YDFTTRRWTRGKNMPDNRS  178 (358)
Q Consensus       102 ~~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~lyv~Gg~~~~~~~~~~~~~~--yd~~t~~W~~~~~~~~~~~  178 (358)
                      ..++.+||... ...+...+..      ..+++ .-++.+|+.+...       +.+.+  .+....+-..+...+....
T Consensus        49 ~~I~~i~p~g~-~~~~~~~~~~------~~gla~~~dG~l~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (302)
T d2p4oa1          49 GEIVSITPDGN-QQIHATVEGK------VSGLAFTSNGDLVATGWNA-------DSIPVVSLVKSDGTVETLLTLPDAIF  114 (302)
T ss_dssp             TEEEEECTTCC-EEEEEECSSE------EEEEEECTTSCEEEEEECT-------TSCEEEEEECTTSCEEEEEECTTCSC
T ss_pred             CEEEEEeCCCC-EEEEEcCCCC------cceEEEcCCCCeEEEecCC-------ceEEEEEecccccceeeccccCCccc
Confidence            36888998854 4444444431      12333 2367888876322       22333  3444444444444444333


Q ss_pred             eeeeEE-ECCEEEEEcCcCCCCCCCCeEEEEECCCCceE---ecCCC-----ccCcCc-eeEEEECCEEEEEeCcccCCC
Q 018336          179 FFAAGE-LNGRVIIAGGHDENKTALSSAWAYDLIKDEWT---ELARM-----TQERDE-CEAVVIGSEFWVVSGYKTERQ  248 (358)
Q Consensus       179 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~---~~~~~-----p~~~~~-~~~~~~~~~lyv~gG~~~~~~  248 (358)
                      ....+. -++.+|+.-.      ....++.+|+.++.=.   .-+..     ...... ..+...++.+|+....     
T Consensus       115 ~n~i~~~~~g~~~v~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~-----  183 (302)
T d2p4oa1         115 LNGITPLSDTQYLTADS------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE-----  183 (302)
T ss_dssp             EEEEEESSSSEEEEEET------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT-----
T ss_pred             cceeEEccCCCEEeecc------ccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCC-----
Confidence            334443 3678887632      1356888888776422   11111     111111 2234567778887643     


Q ss_pred             CceeeeeEEEECCCC
Q 018336          249 GIFDESAESYQLGTG  263 (358)
Q Consensus       249 ~~~~~~i~~yd~~~~  263 (358)
                         ...++.|+....
T Consensus       184 ---~~~i~~~~~~~~  195 (302)
T d2p4oa1         184 ---KMLLLRIPVDST  195 (302)
T ss_dssp             ---TTEEEEEEBCTT
T ss_pred             ---CCeEEecccccc
Confidence               345677877654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.53  E-value=6.8  Score=30.54  Aligned_cols=137  Identities=14%  Similarity=0.142  Sum_probs=69.1

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEEEEECCEEEEEcCcCCCCCCCcceeEEEECCCCcEEe-CCCCCCCceeee
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQVASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTR-GKNMPDNRSFFA  181 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~~~  181 (358)
                      .+..||....+-........     ..- .....++.+++.|+.+       ..+.+||..+.+-.. +...........
T Consensus       198 ~i~~~d~~~~~~~~~~~~~~-----~~v-~~~~~~~~~l~s~s~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~  264 (342)
T d2ovrb2         198 SIRVWDVETGNCIHTLTGHQ-----SLT-SGMELKDNILVSGNAD-------STVKIWDIKTGQCLQTLQGPNKHQSAVT  264 (342)
T ss_dssp             CEEEEETTTCCEEEEECCCC-----SCE-EEEEEETTEEEEEETT-------SCEEEEETTTCCEEEEECSTTSCSSCEE
T ss_pred             eEEEeecccceeeeEecccc-----cce-eEEecCCCEEEEEcCC-------CEEEEEecccccccccccccceeeecee
Confidence            57778887765433222111     111 2233344455555532       368999988766443 322222222223


Q ss_pred             eEEECCEEEEEcCcCCCCCCCCeEEEEECCCCceE-ecCCCccC-c-Cce-eEEEEC-CEEEEEeCcccCCCCceeeeeE
Q 018336          182 AGELNGRVIIAGGHDENKTALSSAWAYDLIKDEWT-ELARMTQE-R-DEC-EAVVIG-SEFWVVSGYKTERQGIFDESAE  256 (358)
Q Consensus       182 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~p~~-~-~~~-~~~~~~-~~lyv~gG~~~~~~~~~~~~i~  256 (358)
                      ....++.+++.|+.+      ..+.+||.++++.. .+...... . ... .+...+ +.+++.|+.++..    ...++
T Consensus       265 ~~~~~~~~~~s~s~D------g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~----~~~l~  334 (342)
T d2ovrb2         265 CLQFNKNFVITSSDD------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE----ETKLL  334 (342)
T ss_dssp             EEEECSSEEEEEETT------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS----CCEEE
T ss_pred             ecccCCCeeEEEcCC------CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCC----eeEEE
Confidence            334566667776643      35999999987653 23222211 1 111 122223 4455666554432    34577


Q ss_pred             EEECCC
Q 018336          257 SYQLGT  262 (358)
Q Consensus       257 ~yd~~~  262 (358)
                      .+|++.
T Consensus       335 ~~Df~~  340 (342)
T d2ovrb2         335 VLDFDV  340 (342)
T ss_dssp             EEECCC
T ss_pred             EEeCCC
Confidence            888764

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.38  E-value=5.2  Score=29.75  Aligned_cols=27  Identities=7%  Similarity=0.041  Sum_probs=20.4

Q ss_pred             eEEEEeCCeEEEECCCCCCCCceEEEEECCCCc
Q 018336          304 TCRVELGGCTLVTGSGYQGGPQEFYVVEGRNGK  336 (358)
Q Consensus       304 ~~~~~~~~~i~v~gG~~~~~~~~i~~yd~~~~~  336 (358)
                      ++....++++|++-|      +..|+||..+++
T Consensus       103 aa~~~~~g~~Y~FkG------~~y~ryd~~~~~  129 (195)
T d1itva_         103 GALRSGRGKMLLFSG------RRLWRFDVKAQM  129 (195)
T ss_dssp             EEEECSTTEEEEEET------TEEEEEETTTTE
T ss_pred             eEEEcCCCeEEEEec------cEEEEEeCCccc
Confidence            334445789999988      479999988764

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.04  E-value=8.2  Score=30.23  Aligned_cols=103  Identities=11%  Similarity=0.164  Sum_probs=54.5

Q ss_pred             CCEEEEEcCcCCCCCCCcceeEEEECCCCcEEeC-CCCCCCceeeeeEEECCEEEEEcCcCCCCCCCCeEEEEECCCCce
Q 018336          137 QGKLVVMGGWDPASYSPVSHVFVYDFTTRRWTRG-KNMPDNRSFFAAGELNGRVIIAGGHDENKTALSSAWAYDLIKDEW  215 (358)
Q Consensus       137 ~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W  215 (358)
                      .+..++.|+.+       ..+.+||..+...... ..-..+   -.....++..++.|+.+      ..+.+||..+..-
T Consensus       212 ~~~~~~~~~~d-------~~i~i~d~~~~~~~~~~~~h~~~---v~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~  275 (355)
T d1nexb2         212 ERKRCISASMD-------TTIRIWDLENGELMYTLQGHTAL---VGLLRLSDKFLVSAAAD------GSIRGWDANDYSR  275 (355)
T ss_dssp             TTTEEEEEETT-------SCEEEEETTTCCEEEEECCCSSC---CCEEEECSSEEEEECTT------SEEEEEETTTCCE
T ss_pred             cceeeeccccc-------ceEEeeecccccccccccccccc---ccccccccceeeeeecc------cccccccccccce
Confidence            45555555532       3588899887664332 111111   12233456666666644      3588899877643


Q ss_pred             EecCCCccCcCceeEEEECCEEEEEeCcccCCCCceeeeeEEEECCCCce
Q 018336          216 TELARMTQERDECEAVVIGSEFWVVSGYKTERQGIFDESAESYQLGTGEW  265 (358)
Q Consensus       216 ~~~~~~p~~~~~~~~~~~~~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~W  265 (358)
                      .... .............++++++.|.         -+.+.+||..+++.
T Consensus       276 ~~~~-~~~~~~~~~~~~~~~~~l~~g~---------d~~i~vwd~~tg~~  315 (355)
T d1nexb2         276 KFSY-HHTNLSAITTFYVSDNILVSGS---------ENQFNIYNLRSGKL  315 (355)
T ss_dssp             EEEE-ECTTCCCCCEEEECSSEEEEEE---------TTEEEEEETTTCCB
T ss_pred             eccc-ccCCceEEEEEcCCCCEEEEEe---------CCEEEEEECCCCCE
Confidence            2111 1111222233456777666552         12578899988764

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=83.90  E-value=9  Score=30.59  Aligned_cols=144  Identities=9%  Similarity=0.077  Sum_probs=67.6

Q ss_pred             eEEEEeCCCCCeeecCCCCCCCCCCCceeEE-EEECCEEEEEcCcC--C------CCCCCcceeEEEECCCCcEEeC-CC
Q 018336          103 GVTVFDPVSLTWDRLGPVPEYPAGLPLFCQV-ASSQGKLVVMGGWD--P------ASYSPVSHVFVYDFTTRRWTRG-KN  172 (358)
Q Consensus       103 ~~~~~d~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~lyv~Gg~~--~------~~~~~~~~~~~yd~~t~~W~~~-~~  172 (358)
                      .+..+|+.......+........ +.....+ +.-++.||+..-..  .      ........++++++.. +...+ ..
T Consensus        93 ~i~~~~~~g~~~~~~~~~~~g~~-~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~  170 (314)
T d1pjxa_          93 GLLVVQTDGTFEEIAKKDSEGRR-MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTA  170 (314)
T ss_dssp             EEEEEETTSCEEECCSBCTTSCB-CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEE
T ss_pred             eEEEEeCCCcEEEEEeccccccc-cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCC
Confidence            57788887765443322221110 0001123 33367899873211  0      0112344788888754 34332 22


Q ss_pred             CCCCceeeeeEE-EC-C----EEEEEcCcCCCCCCCCeEEEEECCCCc---eEe-cCCCccCcC-ceeEEE--ECCEEEE
Q 018336          173 MPDNRSFFAAGE-LN-G----RVIIAGGHDENKTALSSAWAYDLIKDE---WTE-LARMTQERD-ECEAVV--IGSEFWV  239 (358)
Q Consensus       173 ~~~~~~~~~~~~-~~-~----~iyv~GG~~~~~~~~~~~~~yd~~t~~---W~~-~~~~p~~~~-~~~~~~--~~~~lyv  239 (358)
                      +..|   -+.+. -+ +    .+|+...      ....++.|+...+.   +++ ...++.... ......  -+|+|||
T Consensus       171 ~~~p---NGi~~~~d~d~~~~~lyv~d~------~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyV  241 (314)
T d1pjxa_         171 FQFP---NGIAVRHMNDGRPYQLIVAET------PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV  241 (314)
T ss_dssp             ESSE---EEEEEEECTTSCEEEEEEEET------TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE
T ss_pred             ccee---eeeEECCCCCcceeEEEEEee------cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEE
Confidence            2222   11222 12 2    5777632      23578888864331   222 122222211 122333  3678998


Q ss_pred             EeCcccCCCCceeeeeEEEECCCCce
Q 018336          240 VSGYKTERQGIFDESAESYQLGTGEW  265 (358)
Q Consensus       240 ~gG~~~~~~~~~~~~i~~yd~~~~~W  265 (358)
                      ..-.        .+.|.+||++.+..
T Consensus       242 a~~~--------~g~I~~~dp~~g~~  259 (314)
T d1pjxa_         242 ANWG--------SSHIEVFGPDGGQP  259 (314)
T ss_dssp             EEET--------TTEEEEECTTCBSC
T ss_pred             EEcC--------CCEEEEEeCCCCEE
Confidence            7421        34689999987653

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.09  E-value=18  Score=31.63  Aligned_cols=119  Identities=19%  Similarity=0.247  Sum_probs=67.2

Q ss_pred             EEEECCEEEEEcCcCCCCCCCcceeEEEECCCCc--EEeCCCCCCC------ceeeeeEEECCEEEEEcCcCCCCCCCCe
Q 018336          133 VASSQGKLVVMGGWDPASYSPVSHVFVYDFTTRR--WTRGKNMPDN------RSFFAAGELNGRVIIAGGHDENKTALSS  204 (358)
Q Consensus       133 ~~~~~~~lyv~Gg~~~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~------~~~~~~~~~~~~iyv~GG~~~~~~~~~~  204 (358)
                      -+..++.||+...        ...++.+|..|.+  |+.-+..+..      ...-+.+..++.+|+..       .-..
T Consensus        64 Piv~~g~vy~~t~--------~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~t-------~~~~  128 (582)
T d1flga_          64 AIVSDGVIYVTAS--------YSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT-------LDAS  128 (582)
T ss_dssp             CEEETTEEEEEET--------TTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE-------TTTE
T ss_pred             CEEECCEEEEeCC--------CCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEeCCceEEec-------CCCe
Confidence            4578999999865        3478888888764  7653332211      11234566788888752       1246


Q ss_pred             EEEEECCCC--ceEecC-CCccC--cCceeEEEEC---CEEEEEeCcccCCCCceeeeeEEEECCCCc--eEE
Q 018336          205 AWAYDLIKD--EWTELA-RMTQE--RDECEAVVIG---SEFWVVSGYKTERQGIFDESAESYQLGTGE--WKR  267 (358)
Q Consensus       205 ~~~yd~~t~--~W~~~~-~~p~~--~~~~~~~~~~---~~lyv~gG~~~~~~~~~~~~i~~yd~~~~~--W~~  267 (358)
                      ++++|.+++  .|+.-. +....  ......+..+   +.+.++.|..... ......+..||..+++  |+.
T Consensus       129 l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~-~~~~g~v~a~d~~tG~~~W~~  200 (582)
T d1flga_         129 VVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDE-FGVVGRLFARDPDTGEEIWMR  200 (582)
T ss_dssp             EEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGG-GCCBCEEEEECTTTCCEEEEE
T ss_pred             EEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccc-cccccceEEecCCCCcEEEEE
Confidence            899999987  586532 22111  1122223332   2444444433221 1124578999999875  754