Citrus Sinensis ID: 018360

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEHccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MISVVDAYHVVAACVPLYVAMLLAYISVKWwklftpdqcaGINKFVAKFsipllsfqvisknnpykmNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGlslsslpnslilGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELnaaksasvtpnpetpeehdasqesqAKEGEEEAQNRTATRVRTTHILLTVGrkliinpntHATLLGLIWASIefrwgvklpaiiDQSVRILSNGGLGMAMFSLGLfmasrpsiiaCGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFakeynvhpdilstGVLFGMIITLPVTLAYYFLLAL
Flexible Loop (DISEMBL)
MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITglslsslpnSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASvtpnpetpeehdasqesqakegeeeaqnrtatrvrttHILLtvgrkliinpnTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL
Low Complexity Region (SEG)
MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITglslsslpnslilgipllRAMYSEEAalllaqivvlqsliWYnlllflfelnaaKSASVTPNPETPEEHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL
Disordered region (IsUnstruct)
***VVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNA*************************************RVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLA*
Disordered Region (DISOPRED)
**SVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASV*********************************RTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL
Disordered Region (DISEMBL)
MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKS*********************************TRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL
Disordered Region (DISPRO)
MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPE***********************TATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	357	2.2.26 [Sep-21-2011]
Q9LFP6	367	Putative auxin efflux car	yes	no	0.988	0.961	0.606	1e-118
Q9FFD0	351	Putative auxin efflux car	no	no	0.952	0.968	0.424	1e-80
Q5JLM1	363	Probable auxin efflux car	no	no	1.0	0.983	0.415	3e-78
Q6ZIB5	370	Probable auxin efflux car	no	no	0.994	0.959	0.407	5e-76
Q5VQY3	426	Probable auxin efflux car	no	no	1.0	0.838	0.375	2e-74
P0C0X5	554	Probable auxin efflux car	no	no	0.512	0.330	0.609	1e-60
Q67UL3	592	Probable auxin efflux car	no	no	0.462	0.278	0.666	2e-58
Q5VP70	618	Probable auxin efflux car	no	no	0.448	0.258	0.680	3e-58
Q5SMQ9	595	Auxin efflux carrier comp	no	no	0.428	0.257	0.660	5e-58
Q8RWZ6	616	Auxin efflux carrier comp	no	no	0.462	0.267	0.666	5e-58

>sp|Q9LFP6|PIN5_ARATH Putative auxin efflux carrier component 5 OS=Arabidopsis thaliana GN=PIN5 PE=3 SV=1

 Score =  424 bits (1091), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/371 (60%), Positives = 285/371 (76%), Gaps = 18/371 (4%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MIS +D YHVV+A VPLYV+M L ++S +  KLF+P+QCAGINKFVAKFSIPLLSFQ+IS
Sbjct: 1   MISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIIS 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLR-----WIITGLSLSSLPNSLI 115
           +NNP+KM+ KLI +D LQK L  +VL  + +    +G R     W+ITGLS+S LPN+LI
Sbjct: 61  ENNPFKMSPKLILSDILQKFLVVVVLAMVLRFWHPTGGRGGKLGWVITGLSISVLPNTLI 120

Query: 116 LGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDAS 175
           LG+P+L A+Y +EAA +L QIVVLQSLIWY +LLFLFELNAA++    P+     EH  +
Sbjct: 121 LGMPILSAIYGDEAASILEQIVVLQSLIWYTILLFLFELNAARA---LPSSGASLEHTGN 177

Query: 176 QESQAK---------EGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASI 226
            + +A          + EE A  RT + V T  ILL   RKLIINPNT+ATL+G+IWA++
Sbjct: 178 DQEEANIEDEPKEEEDEEEVAIVRTRS-VGTMKILLKAWRKLIINPNTYATLIGIIWATL 236

Query: 227 EFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVG 286
            FR G  LP +ID+S+ +LS+GGLGMAMFSLGLFMAS+ SIIACGT+MA + M LKF++G
Sbjct: 237 HFRLGWNLPEMIDKSIHLLSDGGLGMAMFSLGLFMASQSSIIACGTKMAIITMLLKFVLG 296

Query: 287 PALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLP 346
           PALM AS++ I L+ TLFK+A +QAALPQG+VPFVFAKEYN+HP+I+STGV+FGM+I LP
Sbjct: 297 PALMIASAYCIRLKSTLFKVAILQAALPQGVVPFVFAKEYNLHPEIISTGVIFGMLIALP 356

Query: 347 VTLAYYFLLAL 357
            TLAYYFLL L
Sbjct: 357 TTLAYYFLLDL 367

May act as a component of the auxin efflux carrier.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFD0|PIN8_ARATH Putative auxin efflux carrier component 8 OS=Arabidopsis thaliana GN=PIN8 PE=3 SV=2

 Score =  300 bits (767), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 151/356 (42%), Positives = 219/356 (61%), Gaps = 16/356 (4%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MI+  D Y V+ A VPLYVA++L Y SVKWW +FT DQC  IN+ V  F++PL + +  +
Sbjct: 1   MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPL 120
             +P+ MN + I AD L K++   VL    K S++    W IT  SL +L NSL++G+PL
Sbjct: 61  HVDPFNMNYRFIAADVLSKVIIVTVLALWAKYSNKGSYCWSITSFSLCTLTNSLVVGVPL 120

Query: 121 LRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDASQESQA 180
            +AMY ++A  L+ Q  V Q+++W  LLLF+ E   A  +S   N    +  + + ES  
Sbjct: 121 AKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEFRKAGFSS--NNISDVQVDNINIESGK 178

Query: 181 KE----GEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPA 236
           +E    GE+              ++  V  KL  NPN ++ +LG+ WA I  RW ++LP 
Sbjct: 179 RETVVVGEKS----------FLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPG 228

Query: 237 IIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFA 296
           I++ S+ I+S  G G AMF++G+FMA +  +I CGT +  + M LKFI GPA MA  S  
Sbjct: 229 ILEGSILIMSKAGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIV 288

Query: 297 IGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYY 352
           +GL G + ++A +QAALPQ I  F+FAKEY +H D+LST V+FGM+++LPV +AYY
Sbjct: 289 LGLHGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMLVSLPVLVAYY 344

May act as a transmembrane component of the auxin efflux carrier.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5JLM1|PIN6_ORYSJ Probable auxin efflux carrier component 6 OS=Oryza sativa subsp. japonica GN=PIN6 PE=2 SV=1

 Score =  292 bits (748), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 150/361 (41%), Positives = 220/361 (60%), Gaps = 4/361 (1%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MI   D Y VVAA VPLY A+ L Y SV+WW++FT +QC  +N+ VA F++P  +F+   
Sbjct: 1   MIGWGDVYKVVAATVPLYFALFLGYGSVRWWRIFTREQCDAVNRLVAFFALPFFTFEFTL 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSG--LRWIITGLSLSSLPNSLILGI 118
             +P+++N + + AD + K +   V+ A  +  S+ G  + W IT  SLS+L NSL++G+
Sbjct: 61  HTDPFQVNYRAVAADVISKAVIVAVIGAWARFMSKGGCAVSWSITSFSLSTLTNSLVVGV 120

Query: 119 PLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDASQES 178
           P+ RAMY E A  L+ Q+ V Q+++W  LLLF+ E+  A         E         E+
Sbjct: 121 PMARAMYGEWAQQLVVQLSVFQAIVWLTLLLFVLEVRKAAIGMYVDGAEAAAAAGKDVEA 180

Query: 179 QAKEGEEEAQNRTATRVRTT--HILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPA 236
                        A   + +   ++  V  KL  NPNT+A+ +G+ WA +  R  + LP+
Sbjct: 181 AGAAAAAGTVVVAAAAGKPSLWALVKVVAHKLARNPNTYASFVGITWACLANRLHIALPS 240

Query: 237 IIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFA 296
             + SV I+S  G GMAMFS+GLFMA +  IIACGT  AA+ + LKF +GPA MA  S A
Sbjct: 241 AFEGSVLIMSKSGTGMAMFSMGLFMAQQEKIIACGTSFAALGLVLKFALGPAAMAIGSIA 300

Query: 297 IGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLA 356
           +GLRG + ++A +QAALPQ I  F+FAKEY +H D+LST V+FGM+++LP+ + +Y +L 
Sbjct: 301 VGLRGDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMLVSLPLLVGFYIVLE 360

Query: 357 L 357
           L
Sbjct: 361 L 361

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ZIB5|PIN4_ORYSJ Probable auxin efflux carrier component 4 OS=Oryza sativa subsp. japonica GN=PIN4 PE=2 SV=1

 Score =  285 bits (728), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 151/371 (40%), Positives = 215/371 (57%), Gaps = 16/371 (4%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MI   D Y VV A  PLY A+ L Y SV+WW+ FT +QCA IN  V  FS+P  +F  + 
Sbjct: 1   MIGWGDVYKVVGAMAPLYFALGLGYGSVRWWRFFTAEQCAAINTMVVYFSMPFFTFDFVV 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGL------RWIITGLSLSSLPNSL 114
           + +P+ MN ++I AD + K +A   + A  +              W ITG SL++L N+L
Sbjct: 61  RTDPFAMNYRVIAADAVSKAIAIAAMAAWARTRCGCAAAKAGAQSWSITGFSLAALNNTL 120

Query: 115 ILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAA--------KSASVTPNP 166
           ++G+PLL AMY   A  L+ QI V+QS++W+ LLL  FEL  A           +V  + 
Sbjct: 121 VVGVPLLDAMYGRWAQDLVVQIAVVQSMVWFPLLLMAFELRKAWVVGGGGGVGPAVMSSS 180

Query: 167 ETPEEHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASI 226
             PE+   S                  R+       TVG KL  NPN +A++LG++WA I
Sbjct: 181 SPPEKQ--SDVEMNGAVVAAPGGGGGVRLPFWATARTVGLKLARNPNVYASVLGVVWACI 238

Query: 227 EFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVG 286
            +RW + LP I+  S++++S  G GM+MFS+GLFM  +  +IACG  + A+ MAL+F+ G
Sbjct: 239 AYRWHLSLPGIVTGSLQVMSRTGTGMSMFSMGLFMGQQERVIACGAGLTALGMALRFVAG 298

Query: 287 PALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLP 346
           P      + A+GLRG +  +A +QAALPQ I  FVFAKEY +H D+LST V+FG +I+LP
Sbjct: 299 PLATLVGAAALGLRGDVLHLAIIQAALPQSIASFVFAKEYGLHADVLSTAVIFGTLISLP 358

Query: 347 VTLAYYFLLAL 357
           + +AYY +L  
Sbjct: 359 ILIAYYAVLGF 369

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5VQY3|PIN5_ORYSJ Probable auxin efflux carrier component 5 OS=Oryza sativa subsp. japonica GN=PIN5 PE=2 SV=1

 Score =  279 bits (714), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/426 (37%), Positives = 238/426 (55%), Gaps = 69/426 (16%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MI+  + Y VV A  PLY A  L Y SV+W K F+ +QCAGIN FVA +++P+L F ++S
Sbjct: 1   MITGSEVYQVVEAMAPLYTAAALGYGSVRWLKAFSNEQCAGINHFVALYAVPVLIFDMVS 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVA--------------LTKISSRSGLRWIITGLS 106
            NN YKMN +LI AD LQK +  L L+A                K +  S L+W+IT  S
Sbjct: 61  TNNVYKMNGRLIAADTLQKAVLLLGLMAWALWERSRARGAGAKAKAAVSSPLQWVITCFS 120

Query: 107 LSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFE------------- 153
           ++SLPN++I+G+PLL  MY   +  L+ QIVV+Q  IWYN+++FL+E             
Sbjct: 121 VASLPNTIIMGVPLLNGMYGPVSKDLMKQIVVMQFCIWYNVIIFLYEYMAARRSASAPPP 180

Query: 154 LNAAKSASVTPNP------------------ETPEEHDASQE------SQAKEGEEEAQN 189
            ++  SA ++P+                   + P+E   + E      S A++G      
Sbjct: 181 ASSEGSAKISPSSPVKAAAAAADTNGNAVAADRPQEVAVNIEITEMAASTARDGVSGETT 240

Query: 190 RTATRVRT------------------THILLTVGRKLIINPNTHATLLGLIWASIEFRWG 231
             A  V +                   H++    +KL+  PNT+A+ LGLIW+ I F+ G
Sbjct: 241 AAAKEVSSGEVAPVEEEEASAPAPSMKHVIWMAVKKLLQIPNTYASFLGLIWSLIAFKCG 300

Query: 232 VKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMA 291
             +P I++ S+  +    +G++MFS G F+A +   + CG ++A+ +M +KF++GP +M 
Sbjct: 301 FSMPKIVEDSLFTIRTTAVGLSMFSSGTFIARQSRFVPCGYKIASFSMVIKFLIGPVVML 360

Query: 292 ASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAY 351
            +S  IG+ GTL  IA VQAALP  +  FV+A+EY VH DI+STGV+ G+ I+LPVT+ Y
Sbjct: 361 FASLVIGMHGTLLHIAVVQAALPLAVTSFVYAEEYKVHADIMSTGVILGIFISLPVTIVY 420

Query: 352 YFLLAL 357
           Y LL L
Sbjct: 421 YILLGL 426

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C0X5|PIN1B_ORYSJ Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1

 Score =  233 bits (595), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 114/187 (60%), Positives = 144/187 (77%)

Query: 171 EHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRW 230
            +  +Q     +GE  A       V T  IL+ V RKLI NPNT+++LLG+IW+ + +RW
Sbjct: 368 SNSTAQLRPKDDGEGMAAAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVSYRW 427

Query: 231 GVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALM 290
           G+++PAII +S+ ILS+ GLGMAMFSLGLFMA +P IIACG  +A+ AMA++F+VGPA+M
Sbjct: 428 GIEMPAIIARSISILSDAGLGMAMFSLGLFMALQPRIIACGNSLASYAMAVRFLVGPAVM 487

Query: 291 AASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLA 350
           AA+S A+GLRG L  IA VQAALPQGIVPFVFAKEYNVHP+ILST V+FGM+I LP+TL 
Sbjct: 488 AAASIAVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPNILSTAVIFGMLIALPITLV 547

Query: 351 YYFLLAL 357
           YY LL L
Sbjct: 548 YYILLGL 554

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1

 Score =  226 bits (575), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/165 (66%), Positives = 136/165 (82%)

Query: 193 TRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGM 252
           T V T  IL+ V RKLI NPNT+++L+GLIW+ + FRW  ++PAII +S+ ILS+ GLGM
Sbjct: 428 TSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVCFRWNFEMPAIILKSISILSDAGLGM 487

Query: 253 AMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAA 312
           AMFSLGLFMA +P IIACG ++A  AMA++F+ GPA+MAA+S A+GLRGTL  +A VQAA
Sbjct: 488 AMFSLGLFMALQPRIIACGNKVATFAMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAA 547

Query: 313 LPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
           LPQGIVPFVFAKEY+VHPDILST V+FGM+I LP+TL YY LL L
Sbjct: 548 LPQGIVPFVFAKEYSVHPDILSTAVIFGMLIALPITLVYYILLGL 592

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5VP70|PIN3A_ORYSJ Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1

 Score =  226 bits (575), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 111/163 (68%), Positives = 134/163 (82%)

Query: 195 VRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAM 254
           V T  IL+ V RKLI NPNT+++LLGL W+ + FRW V +PAI+++S+ ILS+ GLGMAM
Sbjct: 456 VMTRLILIMVWRKLIRNPNTYSSLLGLAWSLVAFRWHVSMPAIVEKSISILSDAGLGMAM 515

Query: 255 FSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALP 314
           FSLGLFMA +PSIIACG   A V+MA++F+ GPA+MAA+S AIGLRGTL  +A VQAALP
Sbjct: 516 FSLGLFMALQPSIIACGKSAAVVSMAVRFLAGPAVMAAASIAIGLRGTLLHVAIVQAALP 575

Query: 315 QGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
           QGIVPFVFAKEYNVHP ILST V+FGM+I LP+TL YY LL L
Sbjct: 576 QGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLLYYILLGL 618

May act as a component of the auxin efflux carrier.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5SMQ9|PIN1_ORYSJ Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1

 Score =  225 bits (573), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/165 (66%), Positives = 136/165 (82%)

Query: 193 TRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGM 252
           T V T  IL+ V RKLI NPNT+++L+GLIW+ + FRW  ++PAI+ +S+ ILS+ GLGM
Sbjct: 431 TSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVCFRWNFEMPAIVLKSISILSDAGLGM 490

Query: 253 AMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAA 312
           AMFSLGLFMA +P IIACG ++A  AMA++F+ GPA+MAA+SFA+GLRGTL  +A VQAA
Sbjct: 491 AMFSLGLFMALQPHIIACGNKVATYAMAVRFLAGPAVMAAASFAVGLRGTLLHVAIVQAA 550

Query: 313 LPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
           LPQGIVPFVFAKEY+VHP ILST V+FGM+I LP+TL YY LL L
Sbjct: 551 LPQGIVPFVFAKEYSVHPSILSTAVIFGMLIALPITLVYYILLGL 595

Acts as a component of the auxin efflux carrier. Seems to be involved in the polar auxin transport which may promote adventitious root emergence and control tillering.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8RWZ6|PIN4_ARATH Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1

 Score =  225 bits (573), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 110/165 (66%), Positives = 131/165 (79%)

Query: 193 TRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGM 252
           T V T  IL+ V RKLI NPNT+++L+GLIWA + +RW V +P I+ QS+ ILS+ GLGM
Sbjct: 452 TSVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAYRWHVAMPKILQQSISILSDAGLGM 511

Query: 253 AMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAA 312
           AMFSLGLFMA +P IIACG  +A  AMA++FI GPA+MA +  AIGL G L +IA VQAA
Sbjct: 512 AMFSLGLFMALQPKIIACGNSVATFAMAVRFITGPAIMAVAGIAIGLHGDLLRIAIVQAA 571

Query: 313 LPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
           LPQGIVPFVFAKEYNVHP ILSTGV+FGM+I LP+TL YY LL L
Sbjct: 572 LPQGIVPFVFAKEYNVHPTILSTGVIFGMLIALPITLVYYILLGL 616

Acts as a component of the auxin efflux carrier. Plays a role in generating a sink for auxin into columella cells. Maintains the endogenous auxin gradient, which is essential for correct root patterning.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
449459454	357	PREDICTED: probable auxin efflux carrier	1.0	1.0	0.714	1e-149
356531798	358	PREDICTED: auxin efflux carrier componen	0.997	0.994	0.701	1e-146
224077704	355	auxin efflux carrier component [Populus	0.994	1.0	0.756	1e-136
356568628	359	PREDICTED: probable auxin efflux carrier	0.997	0.991	0.688	1e-136
58339253	357	TPA_exp: auxin efflux carrier protein [M	1.0	1.0	0.658	1e-136
357501649	364	Auxin efflux carrier component [Medicago	1.0	0.980	0.648	1e-135
225452702	357	PREDICTED: auxin efflux carrier componen	1.0	1.0	0.694	1e-133
356514376	362	PREDICTED: auxin efflux carrier componen	0.971	0.958	0.658	1e-129
356565459	363	PREDICTED: auxin efflux carrier componen	0.971	0.955	0.659	1e-128
350535749	357	auxin efflux facilitator SlPIN8 [Solanum	1.0	1.0	0.655	1e-128

>gi|449459454|ref|XP_004147461.1| PREDICTED: probable auxin efflux carrier component 1b-like [Cucumis sativus] gi|449523229|ref|XP_004168626.1| PREDICTED: probable auxin efflux carrier component 1b-like [Cucumis sativus]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/357 (71%), Positives = 301/357 (84%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MIS+ D YHVVAA VPLYVAM+LAYISVKWWK FT +QC+GINKFVAKFSIPLLSFQVIS
Sbjct: 1   MISLSDVYHVVAATVPLYVAMMLAYISVKWWKFFTAEQCSGINKFVAKFSIPLLSFQVIS 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPL 120
           +NN YKMN +LI ADFLQK+LA ++L A+TKI+SR GL WIITGLSLS++PN+LILG+P+
Sbjct: 61  ENNLYKMNRQLILADFLQKILAIILLGAVTKITSRGGLNWIITGLSLSTMPNTLILGLPV 120

Query: 121 LRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDASQESQA 180
           L+AMY  EA +LLAQIVVLQS++WYN+LLFLFE    K+AS+ P  E   E + + E + 
Sbjct: 121 LKAMYGSEADVLLAQIVVLQSILWYNILLFLFEFTTTKAASLAPASEATAEIEITHEGRP 180

Query: 181 KEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQ 240
           KE  EEA++R    +RT  ILLTV RKLIINPNTHAT+LGLIWASI FRWGVKLP +ID+
Sbjct: 181 KEEIEEARDRNGRSLRTKSILLTVARKLIINPNTHATILGLIWASIRFRWGVKLPEVIDR 240

Query: 241 SVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLR 300
           S+ ILS GGLGMAMFSLGLFM SR SIIACGT+M  VAM +KF+VGPALMAA S A+GLR
Sbjct: 241 SISILSTGGLGMAMFSLGLFMGSRTSIIACGTKMTLVAMGMKFLVGPALMAACSLALGLR 300

Query: 301 GTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
           G L ++A VQAALPQGIVPFVF+KEYN+HPD+LSTGVL G++I LPV LAYY+LL+L
Sbjct: 301 GKLLRVAIVQAALPQGIVPFVFSKEYNIHPDVLSTGVLLGLLIALPVALAYYYLLSL 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531798|ref|XP_003534463.1| PREDICTED: auxin efflux carrier component 1-like [Glycine max]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 252/359 (70%), Positives = 303/359 (84%), Gaps = 3/359 (0%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MIS+ DAYHVVA+ VPLYV M+LAYISVKWWK+FTPDQC+GINKFVAKFSIPLLSFQVIS
Sbjct: 1   MISLADAYHVVASTVPLYVTMILAYISVKWWKIFTPDQCSGINKFVAKFSIPLLSFQVIS 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPL 120
            NN YKM+LKLIYADFLQKLLAFLVL+A+TKIS R GL+WIITGLS+++LPN+LILGIPL
Sbjct: 61  SNNIYKMSLKLIYADFLQKLLAFLVLIAITKISGRGGLKWIITGLSITTLPNTLILGIPL 120

Query: 121 LRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKS--ASVTPNPETPEEHDASQES 178
           ++AMY  EA +LLAQI+ LQS+IWYNLLLFL+EL+A K+   +   + +   E D  +E 
Sbjct: 121 VKAMYKSEAVVLLAQIIFLQSMIWYNLLLFLYELDAVKTRPTAAASSSQGSGETDTGREV 180

Query: 179 QAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAII 238
           Q+K GEE+A+ R   + +   IL+TVG+KLI NPNT+ATLLG IW+SI+FRWG+ +P ++
Sbjct: 181 QSK-GEEDAEPRIKRKRKVLLILVTVGKKLIKNPNTYATLLGFIWSSIKFRWGLHMPEVV 239

Query: 239 DQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIG 298
            QS+ ILSNGGLGMAMFSLGLFMAS+ SIIACG RMA VA+ LK ++GP LMA +SF IG
Sbjct: 240 SQSIEILSNGGLGMAMFSLGLFMASQSSIIACGPRMAMVAIGLKVVLGPTLMAVASFVIG 299

Query: 299 LRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
           LR TLFK+A VQAALPQGIVPFVFAKEYNVHP +LST +L GM+I LPV LA+YFLLA+
Sbjct: 300 LRDTLFKVAIVQAALPQGIVPFVFAKEYNVHPAVLSTAILLGMLIALPVELAFYFLLAI 358

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077704|ref|XP_002305371.1| auxin efflux carrier component [Populus trichocarpa] gi|222848335|gb|EEE85882.1| auxin efflux carrier component [Populus trichocarpa]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 270/357 (75%), Positives = 303/357 (84%), Gaps = 2/357 (0%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MIS  D YHVV A VPLY AM+LAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS
Sbjct: 1   MISAADVYHVVTATVPLYFAMILAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPL 120
             NPYKMNLKLI+ADFLQKLLA LVL AL KISSR  L WIITGLSLS+LPN+LILGIPL
Sbjct: 61  GINPYKMNLKLIFADFLQKLLALLVLTALAKISSRGRLNWIITGLSLSTLPNTLILGIPL 120

Query: 121 LRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDASQESQA 180
           LRAM+  EA  LL+QIV LQSLIWYNLLLFLFELNA K A+V P+ E+  + +A QE+Q 
Sbjct: 121 LRAMHGAEAEPLLSQIVGLQSLIWYNLLLFLFELNATKEATVAPSSESTGDLEALQEAQH 180

Query: 181 KEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQ 240
           K+ +E  Q RT  +V+   ILLTVGRKL+ NPN +ATL+ LIWASI  RWGV LP I+D+
Sbjct: 181 KD-DEGVQRRT-RKVKAMVILLTVGRKLMSNPNFYATLVALIWASIHSRWGVNLPDIVDK 238

Query: 241 SVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLR 300
           SVRILS GGLGMAMFSLGLFMASRPSIIACG RMA VAMA+KFIVGPAL+A +S A+GL+
Sbjct: 239 SVRILSTGGLGMAMFSLGLFMASRPSIIACGIRMAMVAMAMKFIVGPALIAVASIAVGLK 298

Query: 301 GTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
           GT+ K+A VQAALPQGIVPFVFAKEYNVHPD LSTGV+FGM+I++P+ LAYY LLAL
Sbjct: 299 GTVLKVAIVQAALPQGIVPFVFAKEYNVHPDTLSTGVIFGMLISMPIALAYYSLLAL 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568628|ref|XP_003552512.1| PREDICTED: probable auxin efflux carrier component 1b-like [Glycine max]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/360 (68%), Positives = 302/360 (83%), Gaps = 4/360 (1%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MIS+ DAYHVVAA VPLYV ++LAYISVKWWK+FTPDQC+GINKFVAKFSIPLLSFQVIS
Sbjct: 1   MISLADAYHVVAATVPLYVTLILAYISVKWWKIFTPDQCSGINKFVAKFSIPLLSFQVIS 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPL 120
            NN YKM+LKL+YADFLQKLLAFL+L+A+TKIS R GL+WIITGLSL++LPN+LILGIPL
Sbjct: 61  SNNIYKMSLKLMYADFLQKLLAFLLLIAITKISGRGGLKWIITGLSLTTLPNTLILGIPL 120

Query: 121 LRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNA---AKSASVTPNPETPEEHDASQE 177
           ++AMY  EA +LLAQI+ LQS+IWYNLLLFL+EL+A    +  +  P  +   E D ++E
Sbjct: 121 MKAMYKGEAVVLLAQIIFLQSMIWYNLLLFLYELDAVNKTRPTAAAPPSQGSGETDTARE 180

Query: 178 SQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAI 237
            Q+K  EE+A+ R   +++   IL+TVG+KLI NPNT+ATLLG IW+SI+FRWG+ +P +
Sbjct: 181 VQSKR-EEDAEPRIKRKMKVMLILVTVGKKLIRNPNTYATLLGFIWSSIQFRWGLHMPEV 239

Query: 238 IDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAI 297
           ++QS+ ILSNGGLGMAMFSLGLFMAS+ SIIACG RM  VA+ LK ++GPALMA +S  I
Sbjct: 240 VNQSIEILSNGGLGMAMFSLGLFMASQSSIIACGPRMTMVAIGLKVVLGPALMAVASLVI 299

Query: 298 GLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
           GLR  LFK+A VQAALPQGIVPFVFAKEYNVHP +LST +L GM+I LPV LA+YFLLA+
Sbjct: 300 GLRDKLFKVAIVQAALPQGIVPFVFAKEYNVHPAVLSTAILLGMLIALPVELAFYFLLAI 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58339253|tpg|DAA05219.1| TPA_exp: auxin efflux carrier protein [Medicago truncatula]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/357 (65%), Positives = 293/357 (82%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MIS+ + YHV+   VPLYV M+LAY+SVKW+K+FT +QC+GINKFVAKFSIPLLSFQVIS
Sbjct: 1   MISLANVYHVITTTVPLYVTMILAYVSVKWFKIFTQEQCSGINKFVAKFSIPLLSFQVIS 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPL 120
            NN YKM+LKL+++DF+QKLLAF++L A+ KIS + GL+WIITG SLS+LPN+LILGIPL
Sbjct: 61  SNNIYKMSLKLMFSDFIQKLLAFVLLTAIIKISGKGGLKWIITGFSLSTLPNTLILGIPL 120

Query: 121 LRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDASQESQA 180
           L+AMY +EA +LLAQIV LQS+IWYNLLLFL+E +AAK+    P  +   E +++ E Q+
Sbjct: 121 LKAMYKDEAIVLLAQIVFLQSMIWYNLLLFLYEFDAAKNMLSAPPSQDTGESESASEIQS 180

Query: 181 KEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQ 240
           K  E+E    T  +++   IL+TVG+KLI NPNT A+L+G+IW+SI+FRWG+ +P +I+ 
Sbjct: 181 KREEDEEPVGTKRKMKIFPILVTVGKKLIRNPNTFASLIGIIWSSIQFRWGIHMPQVINH 240

Query: 241 SVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLR 300
           S+ +LSNGGLGMAMFSLGLFMAS+ SIIACG R   VA+ LK +VGPALMA +S  IGLR
Sbjct: 241 SIELLSNGGLGMAMFSLGLFMASQSSIIACGPRNTVVAIGLKVLVGPALMALASIVIGLR 300

Query: 301 GTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
            TLFK+A VQAALPQGIVPFVFAKEYNVHP ILST +L GM+I LPV LA+YFLLAL
Sbjct: 301 NTLFKVAIVQAALPQGIVPFVFAKEYNVHPSILSTAILLGMLIALPVELAFYFLLAL 357

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501649|ref|XP_003621113.1| Auxin efflux carrier component [Medicago truncatula] gi|355496128|gb|AES77331.1| Auxin efflux carrier component [Medicago truncatula]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/364 (64%), Positives = 294/364 (80%), Gaps = 7/364 (1%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MIS+ + YHV+   VPLYV M+LAY+SVKW+K+FT +QC+GINKFVAKFSIPLLSFQVIS
Sbjct: 1   MISLANVYHVITTTVPLYVTMILAYVSVKWFKIFTQEQCSGINKFVAKFSIPLLSFQVIS 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPL 120
            NN YKM+LKL+++DF+QKLLAF++L A+ KIS + GL+WIITG SLS+LPN+LILGIPL
Sbjct: 61  SNNIYKMSLKLMFSDFIQKLLAFVLLTAIIKISGKGGLKWIITGFSLSTLPNTLILGIPL 120

Query: 121 LRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTP-------NPETPEEHD 173
           L+AMY +EA +LLAQIV LQS+IWYNLLLFL+E +AAK+    P       N +   E +
Sbjct: 121 LKAMYKDEAIVLLAQIVFLQSMIWYNLLLFLYEFDAAKNMLSAPPSQDTGTNNKQTRESE 180

Query: 174 ASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVK 233
           ++ E Q+K  E+E    T  +++   IL+TVG+KLI NPNT A+L+G+IW+SI+FRWG+ 
Sbjct: 181 SASEIQSKREEDEEPVGTKRKMKIFPILVTVGKKLIRNPNTFASLIGIIWSSIQFRWGIH 240

Query: 234 LPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAAS 293
           +P +I+ S+ +LSNGGLGMAMFSLGLFMAS+ SIIACG R   VA+ LK +VGPALMA +
Sbjct: 241 MPQVINHSIELLSNGGLGMAMFSLGLFMASQSSIIACGPRNTVVAIGLKVLVGPALMALA 300

Query: 294 SFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYF 353
           S  IGLR TLFK+A VQAALPQGIVPFVFAKEYNVHP ILST +L GM+I LPV LA+YF
Sbjct: 301 SIVIGLRNTLFKVAIVQAALPQGIVPFVFAKEYNVHPSILSTAILLGMLIALPVELAFYF 360

Query: 354 LLAL 357
           LLAL
Sbjct: 361 LLAL 364

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452702|ref|XP_002282480.1| PREDICTED: auxin efflux carrier component 1 [Vitis vinifera] gi|147866288|emb|CAN79928.1| hypothetical protein VITISV_042448 [Vitis vinifera] gi|296082857|emb|CBI22158.3| unnamed protein product [Vitis vinifera]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/357 (69%), Positives = 297/357 (83%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MIS+ D YHVVAA +PLY  M+LAYISVKWWK+FTP+QC+GINKFVAKFSIPLLSFQ+IS
Sbjct: 1   MISLADVYHVVAATIPLYFVMILAYISVKWWKIFTPEQCSGINKFVAKFSIPLLSFQLIS 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPL 120
           +NNPY+MN++LI +DFLQKLLA ++L  + KI+SR  L W+ITGLSLS+LPN+LILGIPL
Sbjct: 61  ENNPYQMNMRLILSDFLQKLLALILLATIAKINSRGSLTWVITGLSLSTLPNTLILGIPL 120

Query: 121 LRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDASQESQA 180
           L+AMY ++AA LL+QIVVLQSL+WYNLLLFLFELNA K+ S T   E   E +A QE+Q 
Sbjct: 121 LKAMYGDKAAGLLSQIVVLQSLVWYNLLLFLFELNAMKAVSATTPLEAAVELEAPQEAQP 180

Query: 181 KEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQ 240
           KE  EE +     + +T  IL  VGRKL++NPNTHAT++ LIWA I FRW VKLP ++D 
Sbjct: 181 KEEREEGKTTATRKTKTMLILRIVGRKLMMNPNTHATIVSLIWACIRFRWNVKLPGVVDD 240

Query: 241 SVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLR 300
           S+ ILS GGLGMAMFSLGLFMASRPSIIACGTR+A +AM +KF+VGPA+MAAS+     R
Sbjct: 241 SISILSKGGLGMAMFSLGLFMASRPSIIACGTRLAVLAMGMKFLVGPAIMAASASITLSR 300

Query: 301 GTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
           GTLFK++ VQA LPQGIVPFVFAKEY+VHPDILSTGV+FGM+I LP+ L YYFLLAL
Sbjct: 301 GTLFKVSIVQACLPQGIVPFVFAKEYDVHPDILSTGVIFGMLIALPIALVYYFLLAL 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514376|ref|XP_003525882.1| PREDICTED: auxin efflux carrier component 3-like [Glycine max]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 231/351 (65%), Positives = 279/351 (79%), Gaps = 4/351 (1%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MIS+ D YHVV A VPLYV M LAYISVKWWKLFTP+QC+GINKFVA FS+P+LSFQVIS
Sbjct: 1   MISLADVYHVVTATVPLYVTMFLAYISVKWWKLFTPEQCSGINKFVANFSVPILSFQVIS 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPL 120
            NN YKM+LKL+YAD +QKLLAFLV  A+ +I  R GL+WIITGLSLS+LPN+LILGIPL
Sbjct: 61  SNNIYKMSLKLVYADVVQKLLAFLVFTAIIRIKDRGGLKWIITGLSLSTLPNTLILGIPL 120

Query: 121 LRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDASQES-- 178
           ++AMY +EA+LLL QI+ LQS++WYNLLLFL EL+AA  A   P    P +     E+  
Sbjct: 121 MKAMYRDEASLLLPQIIFLQSMVWYNLLLFLHELDAAIPARTMPVVAPPSQDTGDSETSL 180

Query: 179 --QAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPA 236
             Q+KE EEEA++RT ++ R   IL+ VG KLIINPNT+AT +GLIWASI FRWGV +P 
Sbjct: 181 EIQSKEEEEEAEHRTQSKTRMLLILMKVGNKLIINPNTYATFIGLIWASIHFRWGVDMPD 240

Query: 237 IIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFA 296
           +++QS+ IL++GGLGMA FSLGLFMAS   II CG RM  VAM LKF+ GPA+MA +S  
Sbjct: 241 VVNQSIEILASGGLGMATFSLGLFMASSNRIIVCGPRMTLVAMGLKFLAGPAIMAVASIV 300

Query: 297 IGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPV 347
           IGLR  + K+A +QAALPQGIVPFVFA+EYNV+P ILSTGVL GM++ LPV
Sbjct: 301 IGLRDRMLKVAIIQAALPQGIVPFVFAREYNVNPGILSTGVLLGMLMALPV 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565459|ref|XP_003550957.1| PREDICTED: auxin efflux carrier component 3-like [Glycine max]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/352 (65%), Positives = 281/352 (79%), Gaps = 5/352 (1%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MIS+ D YHVV A VPLYV M LAYISVKWWKLF P+QC+GINKFVA FS+P+LSFQVIS
Sbjct: 1   MISLADVYHVVTATVPLYVTMFLAYISVKWWKLFNPEQCSGINKFVANFSVPILSFQVIS 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPL 120
            NN YKM+LKL+YAD +QKLLAFLV  A+ +I  R GL+WIITGLSLS+LPN+LILGIPL
Sbjct: 61  SNNIYKMSLKLVYADVVQKLLAFLVFTAIIRIKGRGGLKWIITGLSLSTLPNTLILGIPL 120

Query: 121 LRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSAS----VTPNPETPEEHDASQ 176
           ++AMY +EA+LLL QI+ LQS++WYNLLLFL EL+AA  A     V P  +   E + S 
Sbjct: 121 MKAMYRDEASLLLPQIIFLQSMVWYNLLLFLHELDAAIPARTMPVVAPPSQDTGESETSL 180

Query: 177 ESQAK-EGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLP 235
           E Q+K E EEEA++RT ++ R   IL+ VG KLIINPNT+AT +GLIWASI FRWGV +P
Sbjct: 181 EIQSKEEEEEEAEHRTQSKTRMLLILMKVGNKLIINPNTYATFIGLIWASIHFRWGVDMP 240

Query: 236 AIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSF 295
            +++QS+ IL++GGLGMA FSLGLFMAS   +I CG RM  VAM LKF+VGPA+MA +S 
Sbjct: 241 DVVNQSIEILASGGLGMATFSLGLFMASNNRVIVCGPRMTLVAMGLKFLVGPAIMAVASI 300

Query: 296 AIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPV 347
            IGLR  + K+A +QAALPQGIVPFVFA+EYNV+P ILSTGVL GM++ LPV
Sbjct: 301 VIGLRDRMLKVAIIQAALPQGIVPFVFAREYNVNPGILSTGVLLGMLMALPV 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535749|ref|NP_001234211.1| auxin efflux facilitator SlPIN8 [Solanum lycopersicum] gi|312983238|gb|ADR30415.1| auxin efflux facilitator SlPIN8 [Solanum lycopersicum]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/357 (65%), Positives = 289/357 (80%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MIS+ D YHVVAA +PLYV M+LAYISV+W KLF+P+QC+GINKFVAKFSIPLLSFQVIS
Sbjct: 1   MISLRDVYHVVAATIPLYVVMILAYISVRWGKLFSPEQCSGINKFVAKFSIPLLSFQVIS 60

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPL 120
            +N YK+NLKL+ ADF+QK LA  +L  L+K+  +  L WIITGLS+S+LPN+LILGIPL
Sbjct: 61  GSNLYKVNLKLLLADFVQKFLAVFLLAILSKLKPKGNLTWIITGLSVSTLPNTLILGIPL 120

Query: 121 LRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDASQESQA 180
           ++A++ + AA LLAQ++ LQSL+WYNLLL LFELNA K + V    E  E     +    
Sbjct: 121 IKAIFGDAAAELLAQLIALQSLVWYNLLLLLFELNATKESYVMSPSEVAELEVPGEPELE 180

Query: 181 KEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQ 240
           ++GEEEA +R   +     ILLTVGRKLIINPNTHATL G+IW+SI FRWGV LP I++Q
Sbjct: 181 EDGEEEATDRPPRKKTIMVILLTVGRKLIINPNTHATLAGIIWSSIHFRWGVNLPKIVEQ 240

Query: 241 SVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLR 300
           S+ ILS+GGLGMAMFS+G+FMAS+ SIIACGT+ A +AMALKF++GP LMA SS  +GL+
Sbjct: 241 SISILSDGGLGMAMFSIGVFMASQDSIIACGTKKAILAMALKFVLGPVLMAISSIVVGLK 300

Query: 301 GTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
           G LF++A VQAALPQGIVPFVFAKEYN+HP ILSTGV+FGM+I +P+ LAYYFLL +
Sbjct: 301 GKLFRLAIVQAALPQGIVPFVFAKEYNIHPTILSTGVIFGMLIAIPIALAYYFLLEI 357

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
TAIR|locus:2147835	367	PIN8 "AT5G15100" [Arabidopsis	1.0	0.972	0.523	1.5e-92
UNIPROTKB|Q5SMQ9	595	PIN1 "Auxin efflux carrier com	0.462	0.277	0.660	2.1e-90
TAIR|locus:2013975	640	PIN3 "AT1G70940" [Arabidopsis	0.560	0.312	0.589	2.7e-88
TAIR|locus:2035037	622	PIN1 "AT1G73590" [Arabidopsis	0.481	0.276	0.616	2.4e-87
TAIR|locus:2038781	616	PIN4 "AT2G01420" [Arabidopsis	0.518	0.300	0.611	1.7e-86
TAIR|locus:2201225	619	PIN7 "AT1G23080" [Arabidopsis	0.456	0.263	0.668	2.1e-86
TAIR|locus:2175559	647	EIR1 "AT5G57090" [Arabidopsis	0.476	0.262	0.623	2.8e-84
TAIR|locus:2025312	570	PIN6 "AT1G77110" [Arabidopsis	0.442	0.277	0.601	1.8e-76
TAIR|locus:2171392	351	PIN5 "AT5G16530" [Arabidopsis	0.971	0.988	0.369	3.8e-62
UNIPROTKB|P0AA49	314	yfdV "YfdV AEC Transporter" [E	0.341	0.388	0.253	2.1e-07

TAIR|locus:2147835 PIN8 "AT5G15100" [Arabidopsis thaliana (taxid:3702)]

 Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
 Identities = 192/367 (52%), Positives = 243/367 (66%)

Query:     1 MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
             MIS +D YHVV+A VPLYV+M L ++S +  KLF+P+QCAGINKFVAKFSIPLLSFQ+IS
Sbjct:     1 MISWLDIYHVVSATVPLYVSMTLGFLSARHLKLFSPEQCAGINKFVAKFSIPLLSFQIIS 60

Query:    61 KNNPYKMNLKLIYADFLQKLLAFLVLVALTKI----SSRSG-LRWIITXXXXXXXXXXXX 115
             +NNP+KM+ KLI +D LQK L  +VL  + +       R G L W+IT            
Sbjct:    61 ENNPFKMSPKLILSDILQKFLVVVVLAMVLRFWHPTGGRGGKLGWVITGLSISVLPNTLI 120

Query:   116 XXXXXXRAMYSEEAXXXXXXXXXXXXXXWYXXXXXXXXXXXXKS-----ASVTPNPETPE 170
                    A+Y +EA              WY            ++     AS+       E
Sbjct:   121 LGMPILSAIYGDEAASILEQIVVLQSLIWYTILLFLFELNAARALPSSGASLEHTGNDQE 180

Query:   171 EHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRW 230
             E +   E + +E EEE        V T  ILL   RKLIINPNT+ATL+G+IWA++ FR 
Sbjct:   181 EANIEDEPKEEEDEEEVAIVRTRSVGTMKILLKAWRKLIINPNTYATLIGIIWATLHFRL 240

Query:   231 GVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALM 290
             G  LP +ID+S+ +LS+GGLGMAMFSLGLFMAS+ SIIACGT+MA + M LKF++GPALM
Sbjct:   241 GWNLPEMIDKSIHLLSDGGLGMAMFSLGLFMASQSSIIACGTKMAIITMLLKFVLGPALM 300

Query:   291 AASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLA 350
              AS++ I L+ TLFK+A +QAALPQG+VPFVFAKEYN+HP+I+STGV+FGM+I LP TLA
Sbjct:   301 IASAYCIRLKSTLFKVAILQAALPQGVVPFVFAKEYNLHPEIISTGVIFGMLIALPTTLA 360

Query:   351 YYFLLAL 357
             YYFLL L
Sbjct:   361 YYFLLDL 367

GO:0005215 "transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009555 "pollen development" evidence=IGI;IMP

GO:0010252 "auxin homeostasis" evidence=IMP

GO:0010315 "auxin efflux" evidence=IMP

UNIPROTKB|Q5SMQ9 PIN1 "Auxin efflux carrier component 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 571 (206.1 bits), Expect = 2.1e-90, Sum P(2) = 2.1e-90
 Identities = 109/165 (66%), Positives = 136/165 (82%)

Query:   193 TRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGM 252
             T V T  IL+ V RKLI NPNT+++L+GLIW+ + FRW  ++PAI+ +S+ ILS+ GLGM
Sbjct:   431 TSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVCFRWNFEMPAIVLKSISILSDAGLGM 490

Query:   253 AMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAA 312
             AMFSLGLFMA +P IIACG ++A  AMA++F+ GPA+MAA+SFA+GLRGTL  +A VQAA
Sbjct:   491 AMFSLGLFMALQPHIIACGNKVATYAMAVRFLAGPAVMAAASFAVGLRGTLLHVAIVQAA 550

Query:   313 LPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
             LPQGIVPFVFAKEY+VHP ILST V+FGM+I LP+TL YY LL L
Sbjct:   551 LPQGIVPFVFAKEYSVHPSILSTAVIFGMLIALPITLVYYILLGL 595

GO:0005215 "transporter activity" evidence=IMP

GO:0006810 "transport" evidence=IMP

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009921 "auxin efflux carrier complex" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0048830 "adventitious root development" evidence=IMP

TAIR|locus:2013975 PIN3 "AT1G70940" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
 Identities = 119/202 (58%), Positives = 143/202 (70%)

Query:   158 KSASVTPNPETPEEHDASQESQAKEGEEEAQ--NRTATRVRTTHILLTVGRKLIINPNTH 215
             K A    N   P    A Q      G E +Q  N     V T  IL+ V RKLI NPNT+
Sbjct:   439 KDAENGLNKLAPNSTAALQSKTGLGGAEASQRKNMPPASVMTRLILIMVWRKLIRNPNTY 498

Query:   216 ATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMA 275
             ++L+GLIWA + FRW V +P II QS+ ILS+ GLGMAMFSLGLFMA +P +IACG  +A
Sbjct:   499 SSLIGLIWALVAFRWHVAMPKIIQQSISILSDAGLGMAMFSLGLFMALQPKLIACGNSVA 558

Query:   276 AVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILST 335
               AMA++F+ GPA+MA ++ AIGLRG L ++A VQAALPQGIVPFVFAKEYNVHP ILST
Sbjct:   559 TFAMAVRFLTGPAVMAVAAIAIGLRGDLLRVAIVQAALPQGIVPFVFAKEYNVHPAILST 618

Query:   336 GVLFGMIITLPVTLAYYFLLAL 357
             GV+FGM+I LP+TL YY LL L
Sbjct:   619 GVIFGMLIALPITLVYYILLGL 640

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009606 "tropism" evidence=IMP

GO:0012506 "vesicle membrane" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0010082 "regulation of root meristem growth" evidence=IGI

GO:0048364 "root development" evidence=IGI;IMP

GO:0009630 "gravitropism" evidence=TAS

GO:0009986 "cell surface" evidence=IDA

GO:0048766 "root hair initiation" evidence=IMP

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0009416 "response to light stimulus" evidence=IDA

GO:0009958 "positive gravitropism" evidence=IMP

GO:0010315 "auxin efflux" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2035037 PIN1 "AT1G73590" [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 2.4e-87, Sum P(2) = 2.4e-87
 Identities = 106/172 (61%), Positives = 135/172 (78%)

Query:   186 EAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRIL 245
             +A+    T V T  IL+ V RKLI NPN++++L G+ W+ I F+W +++PA+I +S+ IL
Sbjct:   451 QAKVMPPTSVMTRLILIMVWRKLIRNPNSYSSLFGITWSLISFKWNIEMPALIAKSISIL 510

Query:   246 SNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFK 305
             S+ GLGMAMFSLGLFMA  P IIACG R AA A A++F+VGPA+M  +S+A+GLRG L  
Sbjct:   511 SDAGLGMAMFSLGLFMALNPRIIACGNRRAAFAAAMRFVVGPAVMLVASYAVGLRGVLLH 570

Query:   306 IAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
             +A +QAALPQGIVPFVFAKEYNVHPDILST V+FGM+I LP+TL YY LL L
Sbjct:   571 VAIIQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLIALPITLLYYILLGL 622

GO:0005215 "transporter activity" evidence=ISS;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048367 "shoot system development" evidence=IMP

GO:0016020 "membrane" evidence=ISS

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0048825 "cotyledon development" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA;TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IMP

GO:0010051 "xylem and phloem pattern formation" evidence=RCA;IMP

GO:0010338 "leaf formation" evidence=IGI

GO:0010358 "leaf shaping" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0048826 "cotyledon morphogenesis" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009624 "response to nematode" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048364 "root development" evidence=IMP;RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2038781 PIN4 "AT2G01420" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
 Identities = 115/188 (61%), Positives = 141/188 (75%)

Query:   173 DASQESQAKEGEEEAQNRT---ATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFR 229
             +++ E +A  G+    N T    T V T  IL+ V RKLI NPNT+++L+GLIWA + +R
Sbjct:   429 NSTAELEAAGGDGGGNNGTHMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAYR 488

Query:   230 WGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPAL 289
             W V +P I+ QS+ ILS+ GLGMAMFSLGLFMA +P IIACG  +A  AMA++FI GPA+
Sbjct:   489 WHVAMPKILQQSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFAMAVRFITGPAI 548

Query:   290 MAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTL 349
             MA +  AIGL G L +IA VQAALPQGIVPFVFAKEYNVHP ILSTGV+FGM+I LP+TL
Sbjct:   549 MAVAGIAIGLHGDLLRIAIVQAALPQGIVPFVFAKEYNVHPTILSTGVIFGMLIALPITL 608

Query:   350 AYYFLLAL 357
              YY LL L
Sbjct:   609 VYYILLGL 616

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048364 "root development" evidence=IMP

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2201225 PIN7 "AT1G23080" [Arabidopsis thaliana (taxid:3702)]

 Score = 565 (203.9 bits), Expect = 2.1e-86, Sum P(2) = 2.1e-86
 Identities = 109/163 (66%), Positives = 130/163 (79%)

Query:   195 VRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAM 254
             V T  IL+ V RKLI NPNT+++L+GLIWA + FRW V +P II QS+ ILS+ GLGMAM
Sbjct:   457 VMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAFRWDVAMPKIIQQSISILSDAGLGMAM 516

Query:   255 FSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALP 314
             FSLGLFMA +P +IACG   A  AMA++F  GPA+MA ++ AIGLRG L ++A VQAALP
Sbjct:   517 FSLGLFMALQPKLIACGNSTATFAMAVRFFTGPAVMAVAAMAIGLRGDLLRVAIVQAALP 576

Query:   315 QGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
             QGIVPFVFAKEYNVHP ILSTGV+FGM+I LP+TL YY LL L
Sbjct:   577 QGIVPFVFAKEYNVHPAILSTGVIFGMLIALPITLVYYILLGL 619

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0007389 "pattern specification process" evidence=IGI;RCA

GO:0048364 "root development" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2175559 EIR1 "AT5G57090" [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
 Identities = 106/170 (62%), Positives = 131/170 (77%)

Query:   188 QNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSN 247
             Q      V T  IL+ V RKLI NPNT+++L GL W+ + F+W +K+P I+  S+ ILS+
Sbjct:   478 QQMPPASVMTRLILIMVWRKLIRNPNTYSSLFGLAWSLVSFKWNIKMPTIMSGSISILSD 537

Query:   248 GGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIA 307
              GLGMAMFSLGLFMA +P IIACG  +A  AMA++F+ GPA++AA+S AIG+RG L  IA
Sbjct:   538 AGLGMAMFSLGLFMALQPKIIACGKSVAGFAMAVRFLTGPAVIAATSIAIGIRGDLLHIA 597

Query:   308 FVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
              VQAALPQGIVPFVFAKEYNVHPDILST V+FGM++ LPVT+ YY LL L
Sbjct:   598 IVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPVTVLYYVLLGL 647

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0000323 "lytic vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=IMP;RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009925 "basal plasma membrane" evidence=IDA

GO:0009958 "positive gravitropism" evidence=IMP

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

TAIR|locus:2025312 PIN6 "AT1G77110" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
 Identities = 95/158 (60%), Positives = 124/158 (78%)

Query:   200 ILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGL 259
             IL  VGRKL  NPNT+++LLGL+W+ I F+W + +P I+D S++I+S+ GLGMAMFSLGL
Sbjct:   413 ILTVVGRKLSRNPNTYSSLLGLVWSLISFKWNIPMPNIVDFSIKIISDAGLGMAMFSLGL 472

Query:   260 FMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVP 319
             FMA +P +I CG + A + M ++FI GP  MA +S  +GLRG+    A VQAALPQGIVP
Sbjct:   473 FMALQPKMIPCGAKKATMGMLIRFISGPLFMAGASLLVGLRGSRLHAAIVQAALPQGIVP 532

Query:   320 FVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL 357
             FVFA+EYN+HPD+LST V+FGMI++LPVT+ YY LL L
Sbjct:   533 FVFAREYNLHPDLLSTLVIFGMIVSLPVTILYYVLLGL 570

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS;IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2171392 PIN5 "AT5G16530" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 131/355 (36%), Positives = 190/355 (53%)

Query:     1 MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
             MI+  D Y V+ A VPLYVA++L Y SVKWW +FT DQC  IN+ V  F++PL + +  +
Sbjct:     1 MINCGDVYKVIEAMVPLYVALILGYGSVKWWHIFTRDQCDAINRLVCYFTLPLFTIEFTA 60

Query:    61 KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITXXXXXXXXXXXXXXXXX 120
               +P+ MN + I AD L K++   VL    K S++    W IT                 
Sbjct:    61 HVDPFNMNYRFIAADVLSKVIIVTVLALWAKYSNKGSYCWSITSFSLCTLTNSLVVGVPL 120

Query:   121 XRAMYSEEAXXXXXXXXXXXXXXWYXXXXXXXXXXXXKSASVTPNPETPEEHDASQESQA 180
              +AMY ++A              W             + A  + N  +  + D       
Sbjct:   121 AKAMYGQQAVDLVVQSSVFQAIVWLTLLLFVLEF---RKAGFSSNNISDVQVD---NINI 174

Query:   181 KEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQ 240
             + G+ E             ++  V  KL  NPN ++ +LG+ WA I  RW ++LP I++ 
Sbjct:   175 ESGKRETV--VVGEKSFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEG 232

Query:   241 SVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLR 300
             S+ I+S  G G AMF++G+FMA +  +I CGT +  + M LKFI GPA MA  S  +GL 
Sbjct:   233 SILIMSKAGTGTAMFNMGIFMALQEKLIVCGTSLTVMGMVLKFIAGPAAMAIGSIVLGLH 292

Query:   301 GTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLL 355
             G + ++A +QAALPQ I  F+FAKEY +H D+LST V+FGM+++LPV +AYY  L
Sbjct:   293 GDVLRVAIIQAALPQSITSFIFAKEYGLHADVLSTAVIFGMLVSLPVLVAYYAAL 347

GO:0005215 "transporter activity" evidence=ISS

GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS

GO:0009926 "auxin polar transport" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010252 "auxin homeostasis" evidence=IMP

GO:0080161 "auxin transmembrane transporter activity" evidence=IDA

GO:0080162 "intracellular auxin transport" evidence=IDA

GO:0009555 "pollen development" evidence=IGI;IMP

UNIPROTKB|P0AA49 yfdV "YfdV AEC Transporter" [Escherichia coli K-12 (taxid:83333)]

 Score = 99 (39.9 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 33/130 (25%), Positives = 58/130 (44%)

Query:   222 IWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMAL 281
             + A+I    GVK+PA  D +  +++    G+A+F+ GL +A+     +      A    L
Sbjct:   180 VLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEI---AYNTFL 236

Query:   282 KFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDI----LSTGV 337
             K I+ P  +     A  L     ++  +  ALP      + A  +NV+       L+  V
Sbjct:   237 KLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSV 296

Query:   338 LFGMIITLPV 347
             L G ++T P+
Sbjct:   297 L-GFVVTAPL 305

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LFP6	PIN5_ARATH	No assigned EC number	0.6064	0.9887	0.9618	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVII.929.1 annotation not avaliable (357 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	357
pfam03547	321	pfam03547, Mem_trans, Membrane transport protein	3e-79
TIGR00946	321	TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam	2e-62
COG0679	311	COG0679, COG0679, Predicted permeases [General fun	4e-21
PRK09903	314	PRK09903, PRK09903, putative transporter YfdV; Pro	3e-05

>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein

 Score =  245 bits (627), Expect = 3e-79
 Identities = 111/346 (32%), Positives = 163/346 (47%), Gaps = 27/346 (7%)

Query: 9   HVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKMN 68
            VV A +P+++ MLL Y++ K   +  PDQ +GINK V  F++PLL F  IS N   +M 
Sbjct: 1   TVVEAVLPVFLIMLLGYLAGKS-GILPPDQASGINKLVVYFALPLLIFSSISTNVTLEMI 59

Query: 69  LKLIYADFLQKLLAFLVLVALTKISSRSGL--RWIITGLSLSSLPNSLILGIPLLRAMYS 126
           +       L  L+  + L+    +S    L   W    +  S+ PN+  LG+PLL A+Y 
Sbjct: 60  VDFWLIPVLVVLIVAISLIIGFLVSKIFKLPLEWRGVLILTSAFPNTGFLGLPLLLALYG 119

Query: 127 EEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDASQESQAKEGEEE 186
           EE        VVL  +I + L  FL E   AK      + +T                  
Sbjct: 120 EEGLSYAIISVVLGVIIIWTLGYFLIESRGAKRDKSEESGDTSGSM-------------- 165

Query: 187 AQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILS 246
                     T  IL+ V  KLI+NP T+A+LLGLI   + F   +  P  I  S+ IL 
Sbjct: 166 ----------TLLILIVVLLKLILNPPTYASLLGLILGLVGFLLPLIFPEFIQDSISILG 215

Query: 247 NGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKI 306
           +  + MA+FSLGL +A      + G   A + + L+ I+ P +M      +GLRG    +
Sbjct: 216 DAAIPMALFSLGLTLALGKLKSSLGAATATIHLILRLILMPLVMLGIVLLLGLRGLTLLV 275

Query: 307 AFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYY 352
           A ++AALP  IV  V A+ YNV  +  ST V +  ++ L     + 
Sbjct: 276 AILEAALPPAIVLGVIAQLYNVDEEEASTVVFWTTLLALLTLPLWI 321

This family includes auxin efflux carrier proteins and other transporter proteins from all domains of life. Length = 321

>gnl|CDD|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family

 Score =  201 bits (514), Expect = 2e-62
 Identities = 111/356 (31%), Positives = 159/356 (44%), Gaps = 35/356 (9%)

Query: 1   MISVVDAYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVIS 60
           MI+ V    V+   V + +  +L     K + +   +  +GIN+FV  F++PL  F  IS
Sbjct: 1   MITYVILETVLPILVVILLGYILG----KRFGILDEEHASGINRFVINFALPLTIFHSIS 56

Query: 61  KNNPYKMNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPL 120
                        AD LQK  + +VL      S    L W+IT               PL
Sbjct: 57  T----------TLADILQKSQSPVVLFLWGAFSGSYALIWLIT--------------KPL 92

Query: 121 LRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDASQESQA 180
            +A Y + +  LL   +   + I Y LLL LF    AK        +T            
Sbjct: 93  FKADYGKLSGFLLVSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLF 152

Query: 181 KEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQ 240
              E+ A    +    T  +L+ V +KLI  P   A LL +I +      G K+P +I +
Sbjct: 153 LVSEDGAGGEGSGE-STRLMLIFVWKKLIKFPPLWAPLLSVILSL----VGFKMPGLILK 207

Query: 241 SVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLR 300
           S+ ILS     MA+FSLG  +A  P  I  G R A +A+ ++F+V PA+MA  S  IGLR
Sbjct: 208 SISILSGATTPMALFSLG--LALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLIGLR 265

Query: 301 GTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLA 356
           G    +A +QAALP G V  V A EY V  ++ ST V    +++L     +  LL 
Sbjct: 266 GLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILLG 321

[Transport and binding proteins, Other]. Length = 321

>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only]

 Score = 92.0 bits (229), Expect = 4e-21
 Identities = 72/348 (20%), Positives = 152/348 (43%), Gaps = 48/348 (13%)

Query: 8   YHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKM 67
             V    +P+++ +LL Y+  ++  L   +   G+++ V   ++P L F  I+  +   +
Sbjct: 3   MIVFEVVLPIFLIILLGYLLKRFGIL-DEEAARGLSRLVVYVALPALLFNSIATADLSGL 61

Query: 68  -NLKLIYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYS 126
            +L LI A  +  LLAF +L  + +   +   R  +     S+ PN   LG+P+  +++ 
Sbjct: 62  ADLGLIVASLVATLLAFFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSLFG 121

Query: 127 EEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDASQESQAKEGEEE 186
           E+        +++   + + L + L   +                               
Sbjct: 122 EKGLAYAVIFLIIGLFLMFTLGVILLARS------------------------------- 150

Query: 187 AQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILS 246
                     T   LL+V +KL+ NP   A +LGL+        G+ LPA +D +V +L+
Sbjct: 151 -------GGGTNKSLLSVLKKLLTNPLIIALILGLLLNL----LGISLPAPLDTAVDLLA 199

Query: 247 NGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKI 306
           +    +A+ +LGL +A      +    +  +A++LK ++ P +    +  +GL G   ++
Sbjct: 200 SAASPLALIALGLSLAFLKLKGS-KPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQV 258

Query: 307 AFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGM---IITLPVTLAY 351
             + +A+P  +  +V A++Y   P + ++ +L      ++TLP+ +  
Sbjct: 259 LVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILL 306

Length = 311

>gnl|CDD|104216 PRK09903, PRK09903, putative transporter YfdV; Provisional

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 76/346 (21%), Positives = 146/346 (42%), Gaps = 63/346 (18%)

Query: 15  VPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKMNLKLIYA 74
           +P+ V MLL Y S +  + F+ DQ    NK V  +++P   F  I++      N ++I+A
Sbjct: 10  LPIIVIMLLGYFSGRR-ETFSEDQARAFNKLVLNYALPAALFVSITR-----ANREMIFA 63

Query: 75  DFLQKLLAFLVLVAL--------TKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYS 126
           D    L++ +V+V           K   R+     +  L ++  P    LG  +L  +Y 
Sbjct: 64  DTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCAL-IAGSPTIGFLGFAVLDPIYG 122

Query: 127 EEAA--LLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPETPEEHDASQESQAKEGE 184
           +  +  L++A I ++ + I   + L+L             NP           S   +G+
Sbjct: 123 DSVSTGLVVAIISIIVNAITIPIGLYLL------------NP-----------SSGADGK 159

Query: 185 EEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRI 244
           + + N +A        L++  ++ ++     AT+L L+        GVK+PA  D +  +
Sbjct: 160 KNS-NLSA--------LISAAKEPVVWAPVLATILVLV--------GVKIPAAWDPTFNL 202

Query: 245 LSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLF 304
           ++    G+A+F+ GL +A+     +      A    LK I+ P  +     A  L     
Sbjct: 203 IAKANSGVAVFAAGLTLAAHKFEFSAEI---AYNTFLKLILMPLALLLVGMACHLNSEHL 259

Query: 305 KIAFVQAALPQGIVPFVFAKEYNVHPDILSTGV---LFGMIITLPV 347
           ++  +  ALP      + A  +NV+    +  +   + G ++T P+
Sbjct: 260 QMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPL 305

Length = 314

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	100.0
PRK09903	314	putative transporter YfdV; Provisional	100.0
COG0679	311	Predicted permeases [General function prediction o	100.0
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	100.0
KOG2722	408	consensus Predicted membrane protein [Function unk	100.0
TIGR00841	286	bass bile acid transporter. Functionally character	99.19
COG0385	319	Predicted Na+-dependent transporter [General funct	98.75
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	98.73
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	98.71
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	98.1
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	97.4
PF05982	327	DUF897: Domain of unknown function (DUF897) ; Inte	97.2
COG3329	372	Predicted permease [General function prediction on	97.18
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	97.04
TIGR00841	286	bass bile acid transporter. Functionally character	96.96
PRK10711	231	hypothetical protein; Provisional	96.13
PRK04288	232	antiholin-like protein LrgB; Provisional	96.07
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	96.04
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	95.97
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	95.96
COG0385	319	Predicted Na+-dependent transporter [General funct	94.63
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	94.56
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	94.34
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	93.48
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	93.35
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	93.03
PRK03659	601	glutathione-regulated potassium-efflux system prot	92.57
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	92.35
PRK03562	621	glutathione-regulated potassium-efflux system prot	92.2
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	91.95
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	91.32
PRK03562	621	glutathione-regulated potassium-efflux system prot	87.79
PF03390	414	2HCT: 2-hydroxycarboxylate transporter family; Int	87.59
KOG4821	287	consensus Predicted Na+-dependent cotransporter [G	87.14
PRK10669	558	putative cation:proton antiport protein; Provision	86.06
KOG2532	466	consensus Permease of the major facilitator superf	85.75
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	85.33
TIGR00698	335	conserved hypothetical integral membrane protein.	85.2
COG2855	334	Predicted membrane protein [Function unknown]	84.33
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	82.31
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	81.32

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=100.00  E-value=3e-49  Score=374.21  Aligned_cols=312  Identities=33%  Similarity=0.477  Sum_probs=259.8

Q ss_pred             HHHHHHhhHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhcCCC--Cc-chHHHHHHHHHHHHHH
Q 018360            7 AYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPY--KM-NLKLIYADFLQKLLAF   83 (357)
Q Consensus         7 ~~~~~~~ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~~~--~~-~~~~~~~~~~~~~~~~   83 (357)
                      ++.++++++|+++++++||+++||+|++++|+.+.++++++|+++||++|+++.+.+.+  +. .+........+....+
T Consensus         3 ~~~~~~~ilpv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (321)
T TIGR00946         3 TYVILETVLPILVVILLGYILGKRFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSY   82 (321)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999943479999999999999999999999999999987654  22 2333333444555667


Q ss_pred             HHHHHHHH-hhcCCchhhHHHhhhccccccchhhhHHHHHHhcccch---hHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018360           84 LVLVALTK-ISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEA---ALLLAQIVVLQSLIWYNLLLFLFELNAAKS  159 (357)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  159 (357)
                      ++++...| +.|+++.++....+ +++++|++|+|+|+++.+|||++   ..++..+++.+++..|++++.+.+..+.++
T Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (321)
T TIGR00946        83 ALIWLITKPLFKADYGKLSGFLL-VSALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFLVSEDGAGG  161 (321)
T ss_pred             HHHHHHHHHHHhcccchhhHHHH-HhhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHHhccccccc
Confidence            78888888 56666555544445 48999999999999999999999   667777777788888999986654221100


Q ss_pred             cCCCCCCCCCCCcccchhhhhhhhhhhhhhhcccccchhHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHH
Q 018360          160 ASVTPNPETPEEHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIID  239 (357)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~  239 (357)
                                       +++              +.+.++..++.+|+.++||+++|+++|++++.+    |+++|+++.
T Consensus       162 -----------------~~~--------------~~~~~~~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~  206 (321)
T TIGR00946       162 -----------------EGS--------------GESTRLMLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLIL  206 (321)
T ss_pred             -----------------ccc--------------chhHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHH
Confidence                             000              011122345678899999999999999999999    999999999


Q ss_pred             HHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHH
Q 018360          240 QSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVP  319 (357)
Q Consensus       240 ~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~  319 (357)
                      ++++++|++++|++|+++|++++..+  .++++|..+..+..|+++.|++++.+...++.|++..+++++++|||+|.++
T Consensus       207 ~~l~~lg~~~~plaLl~lG~~l~~~~--~~~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~  284 (321)
T TIGR00946       207 KSISILSGATTPMALFSLGLALSPRK--IKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVA  284 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhChhh--hccChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHH
Confidence            99999999999999999999998654  3467788899999999999999999998999999999999999999999999


Q ss_pred             HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 018360          320 FVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLA  356 (357)
Q Consensus       320 ~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l~  356 (357)
                      +++|++||.|+|++++.+++||++|++|+|+|++++|
T Consensus       285 ~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~~  321 (321)
T TIGR00946       285 AVLATEYEVDVELASTAVTLSTVLSLISLPLFIILLG  321 (321)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999875

>PRK09903 putative transporter YfdV; Provisional

Probab=100.00  E-value=3.1e-48  Score=365.80  Aligned_cols=304  Identities=20%  Similarity=0.303  Sum_probs=250.8

Q ss_pred             HHHHHhhHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhcCCCCc--chHHHHHHHHHHHHHHHH
Q 018360            8 YHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKM--NLKLIYADFLQKLLAFLV   85 (357)
Q Consensus         8 ~~~~~~ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   85 (357)
                      ...+++++|+++++++||+++ |+|+++|++.+.+|++++|+++||++|+++.+.+.++.  ++.......++.+..+++
T Consensus         3 ~~~~~~ilpif~ii~lG~~~~-r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (314)
T PRK09903          3 TFFIGDLLPIIVIMLLGYFSG-RRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFF   81 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            346788999999999999995 58999999999999999999999999999998765432  455555555666666777


Q ss_pred             HHHHHH-hhcCCchhhHHHhhhccccccchhhhHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 018360           86 LVALTK-ISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEE---AALLLAQIVVLQSLIWYNLLLFLFELNAAKSAS  161 (357)
Q Consensus        86 ~~~~~~-~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  161 (357)
                      ++...| +.|+++.++....+. ++++|+||+|+|+++++||++   ++.++..+ ..+++.+|++|.+..+.++.++  
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~-~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~-~~~~~~~~~~g~~~~~~~~~~~--  157 (314)
T PRK09903         82 SWFGCYKFFKRTHAEAAVCALI-AGSPTIGFLGFAVLDPIYGDSVSTGLVVAIIS-IIVNAITIPIGLYLLNPSSGAD--  157 (314)
T ss_pred             HHHHHHHHhcCCcchhhHhhhh-hcCCCcccccHHHHHHHcCchhhhhhHHHHHH-HHHHHHHHHHHHHHHccccccc--
Confidence            777665 445554444344454 788999999999999999999   45444444 4577889999998886432210  


Q ss_pred             CCCCCCCCCCcccchhhhhhhhhhhhhhhcccccchhHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHH
Q 018360          162 VTPNPETPEEHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQS  241 (357)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~  241 (357)
                                      +               ++   +..++.+|+.++||+++|+++|+++++.    |+++|++++++
T Consensus       158 ----------------~---------------~~---~~~~~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~  199 (314)
T PRK09903        158 ----------------G---------------KK---NSNLSALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPT  199 (314)
T ss_pred             ----------------c---------------cc---chHHHHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHH
Confidence                            0               00   0123557788999999999999999999    99999999999


Q ss_pred             HHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHH
Q 018360          242 VRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFV  321 (357)
Q Consensus       242 l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i  321 (357)
                      ++++|++++|++|+++|++|+..+.  +. .++.+...+.|+++.|+++++....+++|++..+++++++|||+|.++++
T Consensus       200 l~~lg~~~~PlaL~~iG~~L~~~~~--~~-~~~~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i  276 (314)
T PRK09903        200 FNLIAKANSGVAVFAAGLTLAAHKF--EF-SAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGII  276 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccc--cc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHH
Confidence            9999999999999999999988642  22 35667788899999999999888888999999999999999999999999


Q ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018360          322 FAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLLAL  357 (357)
Q Consensus       322 ~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l~~  357 (357)
                      +|++||.|++.+++++++||++|++|+|+|++++.+
T Consensus       277 ~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~~~  312 (314)
T PRK09903        277 IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRL  312 (314)
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998753

>COG0679 Predicted permeases [General function prediction only]

Probab=100.00  E-value=2e-46  Score=352.25  Aligned_cols=304  Identities=24%  Similarity=0.466  Sum_probs=266.5

Q ss_pred             HHHHHHhhHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhcCCCCc-chHHHHHHHHHHHHHHHH
Q 018360            7 AYHVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKM-NLKLIYADFLQKLLAFLV   85 (357)
Q Consensus         7 ~~~~~~~ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   85 (357)
                      +..+++.++|+++++++||+++ |.+.+++++.+.+|++++|+++||++|+++.+++.+.. ++..+...+.+++..++.
T Consensus         2 ~~~~~~~vlpi~lii~lGy~~~-r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (311)
T COG0679           2 MMIVFEVVLPIFLIILLGYLLK-RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL   80 (311)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999995 58999999999999999999999999999999988755 677777777777788888


Q ss_pred             HHHHHHhhcCCchh-hHHHhhhccccccchhhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC
Q 018360           86 LVALTKISSRSGLR-WIITGLSLSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTP  164 (357)
Q Consensus        86 ~~~~~~~~~~~~~~-~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  164 (357)
                      .+.+.|+.++++.+ +....+ +++|+|++++|+|++..+|||+++.++++++..+++.+++.|.+.++..++++     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~-----  154 (311)
T COG0679          81 LALIGRFLFKLDKRETVIFAL-ASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGT-----  154 (311)
T ss_pred             HHHHHHHHhccchhhHHHHHH-HHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----
Confidence            88887776544444 333334 48999999999999999999999999999999999999999998887544320     


Q ss_pred             CCCCCCCcccchhhhhhhhhhhhhhhcccccchhHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHH
Q 018360          165 NPETPEEHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRI  244 (357)
Q Consensus       165 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~  244 (357)
                                                   +    +..++..|+.++||+++|.++|++++..    ++++|+++.++.++
T Consensus       155 -----------------------------~----~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~  197 (311)
T COG0679         155 -----------------------------N----KSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDL  197 (311)
T ss_pred             -----------------------------h----hHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHH
Confidence                                         0    1345678899999999999999999999    99999999999999


Q ss_pred             HHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHH
Q 018360          245 LSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAK  324 (357)
Q Consensus       245 lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~  324 (357)
                      +|++++|++|+++|++|+... ..+.+.+........|+++.|+++++..+.++++++...++++++|||+|.+++++|+
T Consensus       198 l~~a~~pl~li~lG~~L~~~~-~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~  276 (311)
T COG0679         198 LASAASPLALIALGLSLAFLK-LKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLAR  276 (311)
T ss_pred             HHHhhhhHHHHHHhhhcchhh-hccccchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHH
Confidence            999999999999999999843 2334556666677779999999999999999999999999999999999999999999


Q ss_pred             HhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360          325 EYNVHPDILSTGVLFGMIITLPVTLAYYFLL  355 (357)
Q Consensus       325 ~~~~~~~~aa~~v~~stllsi~tl~i~~~~l  355 (357)
                      +||.|++.+++++++||++|++++|.|.+.+
T Consensus       277 ~~~~~~~laa~~i~ist~ls~~t~p~~~~~l  307 (311)
T COG0679         277 QYGGDPRLAASTILLSTLLSLLTLPLLILLL  307 (311)
T ss_pred             HhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888776

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=100.00  E-value=2.8e-46  Score=362.66  Aligned_cols=342  Identities=25%  Similarity=0.411  Sum_probs=263.4

Q ss_pred             HHHHhhHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhcC-CCC-cchHHHHH-HHHHHHHHHHH
Q 018360            9 HVVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNN-PYK-MNLKLIYA-DFLQKLLAFLV   85 (357)
Q Consensus         9 ~~~~~ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~-~~~-~~~~~~~~-~~~~~~~~~~~   85 (357)
                      +++++++|+++++++||+++| +|++++++.+.++++++|+++||++|++++++. .++ .+++++.. ..+..++.+++
T Consensus         1 ~v~~~i~~i~~ii~~G~~~~~-~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (385)
T PF03547_consen    1 TVFSAILPIFLIILLGYLLGR-FGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL   79 (385)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence            368899999999999999965 799999999999999999999999999999975 333 35544443 44556666777


Q ss_pred             HHHHHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC--CC
Q 018360           86 LVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSAS--VT  163 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~  163 (357)
                      ++++.|++|.++.++..... +++|+|++++|+|+++++||++++.|..+++.++++..|+++..+++..+++.+.  .+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~-~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~  158 (385)
T PF03547_consen   80 GFLLSRLFRLPKEWRGVFVL-AASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE  158 (385)
T ss_pred             HHHHHHhcCCCcccceEEEe-cccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence            88888877766555433333 5899999999999999999999999999999999999999999998865443211  11


Q ss_pred             CCC------CCCCCc----ccch-hhhhhh--hh---------hh-------h-----hhh----cccccchhHHHHHHH
Q 018360          164 PNP------ETPEEH----DASQ-ESQAKE--GE---------EE-------A-----QNR----TATRVRTTHILLTVG  205 (357)
Q Consensus       164 ~~~------~~~~~~----~~~~-~~~~~e--~~---------~~-------~-----~~~----~~~~~~~~~~~~~~~  205 (357)
                      +++      ++.|++    ++.+ .+.+++  ++         .+       +     ++.    .+.+...++..++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (385)
T PF03547_consen  159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKSSNSTRKKLKKSI  238 (385)
T ss_pred             ccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhhhhhhHHHHHHHHH
Confidence            000      000000    0000 000000  00         00       0     000    000011233445567


Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHH
Q 018360          206 RKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIV  285 (357)
Q Consensus       206 ~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~  285 (357)
                      ++.++||+++|.++|+++++.+......+|+++.++++++|++++|++|+++|+.|+..++....+++.....++.|+++
T Consensus       239 ~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii  318 (385)
T PF03547_consen  239 LKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLII  318 (385)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHH
Confidence            88899999999999999999954444445599999999999999999999999999977544456777777789999999


Q ss_pred             HHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHH
Q 018360          286 GPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYY  352 (357)
Q Consensus       286 ~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~  352 (357)
                      .|++++++.+.++++++...++++++++|+|++.+++|++||.+++.+++.+++||+++++++|+|+
T Consensus       319 ~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~  385 (385)
T PF03547_consen  319 LPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLWI  385 (385)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999999999999995

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2722 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=1.6e-34  Score=263.79  Aligned_cols=341  Identities=16%  Similarity=0.139  Sum_probs=249.5

Q ss_pred             HHhhHHHHHHHHHhhhhhh-hccccChhhhhHHHHHHHHHHhHHHHHHHHhhc-CCCCc-chHHHHHH-HHHHHHHHHHH
Q 018360           11 VAACVPLYVAMLLAYISVK-WWKLFTPDQCAGINKFVAKFSIPLLSFQVISKN-NPYKM-NLKLIYAD-FLQKLLAFLVL   86 (357)
Q Consensus        11 ~~~ilpi~lii~lG~~~~r-~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~-~~~~~-~~~~~~~~-~~~~~~~~~~~   86 (357)
                      +..++.++++..+||++++ +.|+++++++|.+|++|+++|.||++|..+++. +.++. +|+++.+. .+.+.++.+++
T Consensus        14 v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG   93 (408)
T KOG2722|consen   14 VMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIG   93 (408)
T ss_pred             cccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3578899999999999853 459999999999999999999999999999987 56654 78887775 47888889999


Q ss_pred             HHHHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcccc-------------hhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360           87 VALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEE-------------AALLLAQIVVLQSLIWYNLLLFLFE  153 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~-------------~~~~~~~~~~~~~~~~~~l~~~l~~  153 (357)
                      |++.|++|.+++.+. ....+|+++|.|++++.++.++..++             |+.|+.+......+..|+.++.++.
T Consensus        94 ~lv~~I~rppp~~~~-fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~il~wty~Y~~~~  172 (408)
T KOG2722|consen   94 WLVVKILRPPPQLRG-FIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQILRWTYVYRMLL  172 (408)
T ss_pred             HHHhheecCChhhcC-eEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhhEEEEEEeeeec
Confidence            999999987665543 34557999999999999999996333             3567777776777777887775443


Q ss_pred             hhh-hhh-----cCCCCC----C-CCCCCcccchhhhh----hhhhhhhh--hhcccccchh-HHHHHHHHHHhhchhHH
Q 018360          154 LNA-AKS-----ASVTPN----P-ETPEEHDASQESQA----KEGEEEAQ--NRTATRVRTT-HILLTVGRKLIINPNTH  215 (357)
Q Consensus       154 ~~~-~~~-----~~~~~~----~-~~~~~~~~~~~~~~----~e~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~nP~~i  215 (357)
                      ... +..     +..++-    + +..+++++++++.+    +|++.++.  .+.+.+++.. ...+..+ +-+.+||++
T Consensus       173 ~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~~~~~~g~~~~~~~~~~~~~~~~~L-~~i~~Ppti  251 (408)
T KOG2722|consen  173 PPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKENRNNQVVGREGKVKRRSVSLSEKVIL-KEIFAPPTI  251 (408)
T ss_pred             CCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccccCCCceeeccccceEEEeehhHHhhH-HHhcCchHH
Confidence            221 110     000000    0 00111111100000    01110000  0011111111 1222334 447999999


Q ss_pred             HHHHHHHHHHhhhcc------CCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHH
Q 018360          216 ATLLGLIWASIEFRW------GVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPAL  289 (357)
Q Consensus       216 a~ilgli~~~~~~~~------~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli  289 (357)
                      |.++|++++..++..      +-++ ..+.+.++++|+.++|+.++++|+.|....+.+..+.|.++..++.|+++.|.+
T Consensus       252 a~iiA~vigai~pLr~lifg~~apl-~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iigiii~R~illP~~  330 (408)
T KOG2722|consen  252 AAIIALVIGAIPPLRRLIFGEDAPL-RVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLV  330 (408)
T ss_pred             HHHHHHHHhcchHHHHHhhccCchH-HHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEEEEEEeeeeccchh
Confidence            999999999997421      2233 589999999999999999999999998876555567777888899999999999


Q ss_pred             HHHHHHH---h---C-CchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360          290 MAASSFA---I---G-LRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL  354 (357)
Q Consensus       290 ~~~~~~~---~---~-~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~  354 (357)
                      .+++...   +   + .||....++++|.++|||.+.-.+|+.+|..+++.|.+.+|++.+..+.+.+|..+
T Consensus       331 gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va~l~ltvw~~~  402 (408)
T KOG2722|consen  331 GLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAVASLSLTVWSVF  402 (408)
T ss_pred             hHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            9877432   2   2 57888999999999999999999999999999999999999999999999999765

>TIGR00841 bass bile acid transporter

Probab=99.19  E-value=1.4e-10  Score=107.99  Aligned_cols=108  Identities=12%  Similarity=0.035  Sum_probs=95.0

Q ss_pred             hHHHHHHHHhhhhhccCCc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHHh
Q 018360          248 GGLGMAMFSLGLFMASRPS-IIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEY  326 (357)
Q Consensus       248 ~~~pl~L~~lG~~L~~~~~-~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~  326 (357)
                      ....++++.+|++++..+. ...++.|......+.|+++.|++++++...++.+++....+++.+++|++.++.++++++
T Consensus        12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~~   91 (286)
T TIGR00841        12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYLL   91 (286)
T ss_pred             HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHHh
Confidence            3377899999999987641 112344567778889999999999999888999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360          327 NVHPDILSTGVLFGMIITLPVTLAYYFLL  355 (357)
Q Consensus       327 ~~~~~~aa~~v~~stllsi~tl~i~~~~l  355 (357)
                      |+|.+.+++.+.+||++|++++|+|..++
T Consensus        92 ~gn~~la~~~~~~stlls~vt~Pl~l~~~  120 (286)
T TIGR00841        92 KGDMALSISMTTCSTLLALGMMPLLLYIY  120 (286)
T ss_pred             CCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998875

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=98.75  E-value=1.8e-07  Score=86.73  Aligned_cols=109  Identities=16%  Similarity=0.129  Sum_probs=96.2

Q ss_pred             hhHHHHHHHHhhhhhccCC-cccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHH
Q 018360          247 NGGLGMAMFSLGLFMASRP-SIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKE  325 (357)
Q Consensus       247 ~~~~pl~L~~lG~~L~~~~-~~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~  325 (357)
                      .....+.+|..|.+|+... +...++||........-++++|++++++.+++++|++...-+++.+++|.++.+.+++..
T Consensus        41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~l  120 (319)
T COG0385          41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYL  120 (319)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHH
Confidence            5556677777787776543 122367888999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360          326 YNVHPDILSTGVLFGMIITLPVTLAYYFLL  355 (357)
Q Consensus       326 ~~~~~~~aa~~v~~stllsi~tl~i~~~~l  355 (357)
                      +|+|...+-....+||+++.++.|++..++
T Consensus       121 AkGnValsV~~tsvStll~~f~tPllv~l~  150 (319)
T COG0385         121 AKGNVALSVCSTSVSTLLGPFLTPLLVGLL  150 (319)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998875

>TIGR00832 acr3 arsenical-resistance protein

Probab=98.73  E-value=3e-07  Score=87.21  Aligned_cols=142  Identities=11%  Similarity=0.073  Sum_probs=107.7

Q ss_pred             HHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHH-HHHhhHHH------HHHHHhhhhhccCC-cccccchHHHHHH
Q 018360          207 KLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVR-ILSNGGLG------MAMFSLGLFMASRP-SIIACGTRMAAVA  278 (357)
Q Consensus       207 ~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~-~lg~~~~p------l~L~~lG~~L~~~~-~~~~~~~~~~~~~  278 (357)
                      |.+....+.+.++|++.+..       .|+.....-. .+.+...|      ..|+.+|.++..++ +...+++|.....
T Consensus         6 ~~~~~~~~~~~i~~~~~g~~-------~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~   78 (328)
T TIGR00832         6 RYLTLWIFLAIAAGVGLGVL-------FPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILS   78 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHH
Confidence            34555667788888888876       3332221111 11223333      35667667775543 1223567888889


Q ss_pred             HHHHHHHHHHHHHHHHHHh-CCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360          279 MALKFIVGPALMAASSFAI-GLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLL  355 (357)
Q Consensus       279 ~~~rli~~Pli~~~~~~~~-~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l  355 (357)
                      ....+++.|++++++.+.+ +.+++...-+++.+++|++..+.+++...|+|...+-+...++|+++.+++|.+.+++
T Consensus        79 ~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll  156 (328)
T TIGR00832        79 LFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLL  156 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998764 8899999999999999999999999999999999999999999999999999988765

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=98.71  E-value=1.5e-07  Score=82.14  Aligned_cols=106  Identities=19%  Similarity=0.217  Sum_probs=84.7

Q ss_pred             HHHHHHHhhhhhccCCc-ccccchHHHHHHHHHHHHHHHHHHHHHH-HHhCCchhhHHHhhhhhcCCcchHHHHHHHHhC
Q 018360          250 LGMAMFSLGLFMASRPS-IIACGTRMAAVAMALKFIVGPALMAASS-FAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYN  327 (357)
Q Consensus       250 ~pl~L~~lG~~L~~~~~-~~~~~~~~~~~~~~~rli~~Pli~~~~~-~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~  327 (357)
                      ....++..|.+++.++- ...++.|......+..+++.|++++++. ..++.++.....+++.+++|.+..+..++...|
T Consensus         4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~~   83 (187)
T PF01758_consen    4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLAG   83 (187)
T ss_dssp             HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHTT
T ss_pred             hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHhC
Confidence            45678888888876641 1123456667788999999999999998 788999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360          328 VHPDILSTGVLFGMIITLPVTLAYYFLL  355 (357)
Q Consensus       328 ~~~~~aa~~v~~stllsi~tl~i~~~~l  355 (357)
                      +|.+++.+.+.++|+++.+++|++..++
T Consensus        84 Gd~~ls~~lt~istll~~~~~P~~~~l~  111 (187)
T PF01758_consen   84 GDVALSVSLTLISTLLAPFLMPLLLYLL  111 (187)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccceeeHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998875

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=98.10  E-value=2.5e-05  Score=73.63  Aligned_cols=140  Identities=16%  Similarity=0.159  Sum_probs=108.0

Q ss_pred             chhHHHHHHHHHHHHhhhccCCCCcHHHHHHH--HHHHhhHHHHHHHHhhhhhccCCc-ccccchHHHHHHHHHHHHHHH
Q 018360          211 NPNTHATLLGLIWASIEFRWGVKLPAIIDQSV--RILSNGGLGMAMFSLGLFMASRPS-IIACGTRMAAVAMALKFIVGP  287 (357)
Q Consensus       211 nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l--~~lg~~~~pl~L~~lG~~L~~~~~-~~~~~~~~~~~~~~~rli~~P  287 (357)
                      |+.+++.++++.++..-     +-|+.-.+.+  +...+..+.+..+.-|+++....- ...++||........-+++.|
T Consensus         1 ~~fl~~l~~ai~la~~~-----P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P   75 (313)
T PF13593_consen    1 QWFLLGLLLAILLAYLF-----PAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP   75 (313)
T ss_pred             CchHHHHHHHHHHHHHc-----CcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            45667777777777762     2222221222  234455588899999999976531 223577888888999999999


Q ss_pred             HHHHHHHHHhC--CchhhHHHhhhhhcCCcchHH-HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360          288 ALMAASSFAIG--LRGTLFKIAFVQAALPQGIVP-FVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLL  355 (357)
Q Consensus       288 li~~~~~~~~~--~~~~~~~~~vl~~a~P~a~~~-~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l  355 (357)
                      ++++++....+  .+++...-+++.+++|+.+.+ +++++..|+|+..+-....+|+++++++.|+|+.++
T Consensus        76 ll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~  146 (313)
T PF13593_consen   76 LLGFGLSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLL  146 (313)
T ss_pred             HHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence            99999887763  577888888999999999766 689999999999999999999999999999998764

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=97.40  E-value=0.0039  Score=58.21  Aligned_cols=144  Identities=11%  Similarity=0.085  Sum_probs=103.2

Q ss_pred             HHHHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHH--HHHhhHHHHHHHHhhhhh---ccCC----cccccchHH
Q 018360          204 VGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVR--ILSNGGLGMAMFSLGLFM---ASRP----SIIACGTRM  274 (357)
Q Consensus       204 ~~~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~--~lg~~~~pl~L~~lG~~L---~~~~----~~~~~~~~~  274 (357)
                      .+.|.+.-=.++|+++|+.++..       .|+ +.+.++  ..++...|.+.-.+=+.-   ...+    +.-..++|.
T Consensus        11 ~~dk~l~~wv~l~i~~Gi~lG~~-------~p~-~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~   82 (342)
T COG0798          11 FLDKYLTLWVFLAIAIGILLGVH-------FPG-LAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKP   82 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-------ccc-hhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchH
Confidence            34444443377888888887754       554 444444  455556665543332221   1111    011245677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hCCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018360          275 AAVAMALKFIVGPALMAASSFA-IGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYF  353 (357)
Q Consensus       275 ~~~~~~~rli~~Pli~~~~~~~-~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~  353 (357)
                      .....+.-.++.|++++.+++. ++..|+...-+++....||-..+.+.++.-++|.|.++..+.++.++.++..|.+.+
T Consensus        83 L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~~  162 (342)
T COG0798          83 LILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLGK  162 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            8888999999999999988755 466667777888899999999999999999999999999999999999999987766


Q ss_pred             Hh
Q 018360          354 LL  355 (357)
Q Consensus       354 ~l  355 (357)
                      ++
T Consensus       163 ~~  164 (342)
T COG0798         163 FF  164 (342)
T ss_pred             HH
Confidence            53

>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function

Probab=97.20  E-value=0.18  Score=47.26  Aligned_cols=253  Identities=15%  Similarity=0.133  Sum_probs=124.3

Q ss_pred             HHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHH---HhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 018360           16 PLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQV---ISKNNPYKMNLKLIYADFLQKLLAFLVLVALTKI   92 (357)
Q Consensus        16 pi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (357)
                      |..+...+|.+++. .| -|-+.-+.+.|..--.++=+.=++.   +.+.++++ .+.......+..++.-++++.+-|.
T Consensus         1 P~vLFF~LG~~A~~-~k-SdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~-~~~~~~~~~~lg~liPl~~~~iLr~   77 (327)
T PF05982_consen    1 PVVLFFILGIIAAL-LK-SDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTA-LLLPLLAAVLLGILIPLIAFPILRR   77 (327)
T ss_pred             CchHHHHHHHHHHH-Hc-CCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778888742 22 2334556666665556665655653   22222222 2233333333233334445555554


Q ss_pred             -hcCCchhhHHHhhhccccccchhhhHHHHHHhcccchhH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCC
Q 018360           93 -SSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAAL---LLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPET  168 (357)
Q Consensus        93 -~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  168 (357)
                       .|.++.+..  +. ++-|+....--+....+...++++.   |...+.......-.-++..+....+.++.   ..++.
T Consensus        78 ~~~l~~~daa--Ai-AAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L~~~~~~~~~---~~~~~  151 (327)
T PF05982_consen   78 LGKLDRADAA--AI-AAHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLLARLFSRKQA---AGATA  151 (327)
T ss_pred             ccCCChhhHH--HH-HHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHHHHhcccc---ccccC
Confidence             455655542  33 3667777777777777776555544   33333333223333455555543322100   00000


Q ss_pred             CCCcccchhhhhhhhhhhhhhhcccccchhHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCC-CcHHHHHHHHHHHh
Q 018360          169 PEEHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVK-LPAIIDQSVRILSN  247 (357)
Q Consensus       169 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~ia~ilgli~~~~~~~~~~~-lP~~i~~~l~~lg~  247 (357)
                      +.+..+..++             +++    .+.++.+|..++|+-+...+-|+++++.....+.. +-.+..+.++    
T Consensus       152 ~~~~~~~~~~-------------~~~----~~~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~lF~----  210 (327)
T PF05982_consen  152 SSTRVGAGSG-------------HEG----ISWGELLHESLTNKSVVLLLGGLIIGFLAGPEGVESIKPFFVDLFK----  210 (327)
T ss_pred             Cccccccccc-------------ccc----ccHHHHHHHHHcCchHHHHHHHHHHhheeCccchhhccchhhccHH----
Confidence            0000000000             001    13567889999999999999999999984222221 2223344443    


Q ss_pred             hHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHH----HHHHhCCchh
Q 018360          248 GGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAA----SSFAIGLRGT  302 (357)
Q Consensus       248 ~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~----~~~~~~~~~~  302 (357)
                      ...-+-|+-+|+.=+++    -+++|+.-+..+.==+++|++...    +.++.|++.-
T Consensus       211 G~L~lFLLeMGl~A~~r----L~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~~~gls~G  265 (327)
T PF05982_consen  211 GVLCLFLLEMGLVAARR----LRDLRKVGWFLIAFGILMPLINALIGIGLGWLLGLSPG  265 (327)
T ss_pred             HHHHHHHHHhhHHHHHh----hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            33333444444444433    145666555555555667877543    3455676543

>COG3329 Predicted permease [General function prediction only]

Probab=97.18  E-value=0.19  Score=46.32  Aligned_cols=255  Identities=14%  Similarity=0.159  Sum_probs=122.7

Q ss_pred             hHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhcCCCCc---chHHHHHHHHHHHHHHHHHHHHH
Q 018360           14 CVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKM---NLKLIYADFLQKLLAFLVLVALT   90 (357)
Q Consensus        14 ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   90 (357)
                      .=|..+....|.++.- .| -|-+.-+.+.+-.-..++-|.=|+.-.+.+.+..   -........++.++.+..-+.+.
T Consensus        16 ~sP~llFf~~Gmlia~-~k-sdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l~   93 (372)
T COG3329          16 LSPTLLFFILGMLIAA-FK-SDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLR   93 (372)
T ss_pred             ccchHHHHHHHHHHHH-Hh-ccccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467777788888631 11 1222334444443334455555554333322222   22223334455555554444455


Q ss_pred             HhhcCCchhhHHHhhhccccccchhhhHHHHHHhcccchhHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCC
Q 018360           91 KISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAALL---LAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNPE  167 (357)
Q Consensus        91 ~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  167 (357)
                      |+.|.+..++.  +. ++.|+...---+.-+.....+.+..|   +.....+..+.---.+..+.+.+-.+++..+..+.
T Consensus        94 kl~~vdtvdaa--A~-ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lalMeiPallval~l~~~y~~~~k~s~aa~~  170 (372)
T COG3329          94 KLPKVDTVDAA--AT-AGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLALMEIPALLVALVLANIYLNDEKRSAAAEA  170 (372)
T ss_pred             HccccchHHHH--HH-HhhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHHhhchHHHHHHHHHHHHHhcccccccccc
Confidence            55465555542  22 25666666666666666665555443   22111111111112233333322111111111121


Q ss_pred             CCCC----------cc----cchhhhhhhhhhhhhhhcccccchhHHHHHHHHHHhhchhHHHHHHHHHHHHhhhccCCC
Q 018360          168 TPEE----------HD----ASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPNTHATLLGLIWASIEFRWGVK  233 (357)
Q Consensus       168 ~~~~----------~~----~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~~ia~ilgli~~~~~~~~~~~  233 (357)
                      ++++          .|    |.+..+++++|++       +    -..++..+..+.||-+...+.|+++++..   |-+
T Consensus       171 ~s~~~vA~~e~g~~~d~~ssr~~~~~~~~~ed~-------~----v~~~ell~Esflnpal~lllggl~iGlit---Ge~  236 (372)
T COG3329         171 HSKQLVAAGEYGDQTDLASSRQEYLSPQWGEDN-------R----VKIWELLQESFLNPALVLLLGGLAIGLIT---GEQ  236 (372)
T ss_pred             ccccchhhcccCchhhhhhhhhhhcccccCccc-------c----hhhHHHHHHHHcCchHHHHHHHHHHhhee---ccC
Confidence            2221          01    0011111111110       1    12356678889999999999999999983   444


Q ss_pred             CcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHH
Q 018360          234 LPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMA  291 (357)
Q Consensus       234 lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~  291 (357)
                      =-+.+.++.+-+=+...-+-|+.+|+.-.++-    .+.|+.-...+.==++.|++.-
T Consensus       237 g~~vl~~F~~~lFqGvL~lflL~MGm~A~rrl----~elrk~g~~~v~fgllaPil~g  290 (372)
T COG3329         237 GESVLKPFFDPLFQGVLCLFLLDMGMTAGRRL----KELRKVGQGLVLFGLLAPILHG  290 (372)
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHhHHHHHHH----HHHHhcCcceehHHHHHHHHHH
Confidence            33456666676777777788889999887653    2344433333333344565543

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=97.04  E-value=0.35  Score=46.91  Aligned_cols=81  Identities=14%  Similarity=0.154  Sum_probs=55.5

Q ss_pred             HHHhhHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhcCCCCc---chHHHHHHHHH---HHHHH
Q 018360           10 VVAACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKNNPYKM---NLKLIYADFLQ---KLLAF   83 (357)
Q Consensus        10 ~~~~ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~~~~~~---~~~~~~~~~~~---~~~~~   83 (357)
                      .++.+=+..+.+++|.++. ..|+++.+......+.+...++|..++--+.+.|+++.   ..+.+..++++   +.+..
T Consensus        21 ~f~~l~~~vl~~~~~~~ls-nlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~   99 (378)
T PF05684_consen   21 FFKYLPGAVLCYLLGMLLS-NLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGA   99 (378)
T ss_pred             hHhhcCHHHHHHHHHHHHH-HCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            3455667778889999987 48999655667899999999999999999999887642   24444444433   33334


Q ss_pred             HHHHHHHH
Q 018360           84 LVLVALTK   91 (357)
Q Consensus        84 ~~~~~~~~   91 (357)
                      .+++.+.+
T Consensus       100 ~va~~l~~  107 (378)
T PF05684_consen  100 VVAFLLFG  107 (378)
T ss_pred             HHHHHHHh
Confidence            44444433

>TIGR00841 bass bile acid transporter

Probab=96.96  E-value=0.013  Score=54.67  Aligned_cols=133  Identities=17%  Similarity=0.135  Sum_probs=74.1

Q ss_pred             HHHhhHHHHHHHHHhhhhhhhccccChhh--hhHHHHHHHHHHhHHHHHHHHhhc--CCCCcchHHHHHHHHHHHHHHHH
Q 018360           10 VVAACVPLYVAMLLAYISVKWWKLFTPDQ--CAGINKFVAKFSIPLLSFQVISKN--NPYKMNLKLIYADFLQKLLAFLV   85 (357)
Q Consensus        10 ~~~~ilpi~lii~lG~~~~r~~~~~~~~~--~~~L~~lv~~i~lPalif~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   85 (357)
                      ++....-+++-+.+|..+.|+.+.+.+..  .+.++.+.+.    .+++..+..+  +..+..+....+..+...+.+.+
T Consensus       136 i~~~~~~v~vPl~lG~~~r~~~p~~~~~~~~~~~~s~~~l~----liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~~~~~  211 (286)
T TIGR00841       136 IGLSLVAVLIPVSIGMLVKHKLPQIAKIILKVGLISVFLLS----VIIAVVGGINVENLATIGPLLLLVGILLPLAGFLL  211 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCchHHHHHHH----HHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            33336667777888998833221111111  1223332222    2223323222  12222344455555666777889


Q ss_pred             HHHHHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 018360           86 LVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLL  148 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~~~~~~~~~~~~~~~~~~~l~  148 (357)
                      +|.++|.+|.+..++....+ .++..|++ +++++....|+++.......|.+.+++..-.++
T Consensus       212 g~~~a~~~~l~~~~~~t~~~-~~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a  272 (286)
T TIGR00841       212 GYLLAKLAGLPWARCRTISI-EVGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFA  272 (286)
T ss_pred             HHHHHHHhCCCHhhheeeee-eeecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988766434322234 47889988 999999999986655556666655554443333

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PRK10711 hypothetical protein; Provisional

Probab=96.13  E-value=0.17  Score=45.25  Aligned_cols=142  Identities=12%  Similarity=0.075  Sum_probs=104.0

Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHH
Q 018360          206 RKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIV  285 (357)
Q Consensus       206 ~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~  285 (357)
                      ++.+.||.+++.++-+.+-..   .|++..++ .+--+++...--| +-.+++.-|.+..+..|++++++...+.+=-++
T Consensus        27 ~~~~l~Pll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v  101 (231)
T PRK10711         27 KFPLLNPLLVAMVVIIPFLLL---TGIPYEHY-FKGSEVLNDLLQP-AVVALAFPLYEQLHQIRARWKSIISICFIGSVV  101 (231)
T ss_pred             CCCcccHHHHHHHHHHHHHHH---hCCCHHHH-HhccHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            566789999998777766665   27766554 4444666655555 446777888877555677888888888777777


Q ss_pred             HHHHHHHHHHHhCCchhhHHHhhhhhc-CCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360          286 GPALMAASSFAIGLRGTLFKIAFVQAA-LPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLL  355 (357)
Q Consensus       286 ~Pli~~~~~~~~~~~~~~~~~~vl~~a-~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l  355 (357)
                      .-...+.+++++|.|++....+.=-+. +|.   ..-.+++.|++++.++..+.+|=++....-|.+.-.+
T Consensus       102 ~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPI---Am~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~  169 (231)
T PRK10711        102 AMVTGTAVALWMGATPEIAASILPKSVTTPI---AMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM  169 (231)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHhhhhhhHHH---HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            878888888999999987766655443 343   3567899999999999999999888877777655443

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=96.07  E-value=0.29  Score=43.89  Aligned_cols=143  Identities=13%  Similarity=0.134  Sum_probs=101.5

Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHH
Q 018360          206 RKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIV  285 (357)
Q Consensus       206 ~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~  285 (357)
                      |+.+.||.+++.++-+.+-..   .+++..++ .+--+++...--| +-.+++.-|.+..+..|++|+.+...+..=-++
T Consensus        32 ~~~~lnPll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~  106 (232)
T PRK04288         32 GFFLFTPLFVAMVLGIAFLKL---TGISYEEY-NIGGDIISFFLEP-ATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC  106 (232)
T ss_pred             CCcchhHHHHHHHHHHHHHHH---hCCCHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            556789999988877776665   26666544 4445555554444 445677888776555677888888887777777


Q ss_pred             HHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360          286 GPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLL  355 (357)
Q Consensus       286 ~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l  355 (357)
                      .-...+.+.+++|.|++....+.=-+.  +.....-.+++.|+++..++..+.++=++..+.-|...-.+
T Consensus       107 ~i~s~~~la~~lgl~~~~~~Sl~pKSV--TtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~  174 (232)
T PRK04288        107 SVLIIYLVAKLIQLDNAVMASMLPQAA--TTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF  174 (232)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHhhHhh--hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            777778888899999986655544432  22234668899999999999999999888877777655443

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=96.04  E-value=0.24  Score=43.95  Aligned_cols=142  Identities=13%  Similarity=0.054  Sum_probs=101.7

Q ss_pred             HHHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHH
Q 018360          205 GRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFI  284 (357)
Q Consensus       205 ~~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli  284 (357)
                      +++.+.||.+++.++=+.+-..   .|++..++- +--+.+...--|. -.+++.-|.+..+..+++++++...+..=-+
T Consensus        15 ~~~~~l~P~l~a~~~ii~~L~~---~~i~y~~Y~-~gg~~l~~lLgPa-tVALAvPLY~~~~~l~~~~~~il~~~~~g~~   89 (215)
T PF04172_consen   15 FKSPFLNPLLIAIVLIIAFLLL---TGIPYEDYM-QGGDILSFLLGPA-TVALAVPLYRQRRLLKKNWIPILVGVLVGSL   89 (215)
T ss_pred             cCCCcccHHHHHHHHHHHHHHH---HCCCHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556789999998875555444   277665443 4566665555554 7888999987655567788888888777777


Q ss_pred             HHHHHHHHHHHHhCCchhhHHHhhhhhc-CCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360          285 VGPALMAASSFAIGLRGTLFKIAFVQAA-LPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL  354 (357)
Q Consensus       285 ~~Pli~~~~~~~~~~~~~~~~~~vl~~a-~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~  354 (357)
                      +.-...+.+.++++.|++....+.=-+. +|.   ..-.+++.|+++..++..+.+|=++....-|.+.-.
T Consensus        90 ~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpi---Ai~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk~  157 (215)
T PF04172_consen   90 VSIFSAVLLARLLGLSPEIILSLAPKSVTTPI---AIEISEQIGGIPSLTAVFVVITGILGAVLGPPLLKL  157 (215)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHH---HHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHhH
Confidence            7777778888899999886665554443 343   356788999999999999999888877766655443

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=95.97  E-value=0.25  Score=43.82  Aligned_cols=144  Identities=12%  Similarity=0.055  Sum_probs=101.6

Q ss_pred             HHHHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHH
Q 018360          204 VGRKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKF  283 (357)
Q Consensus       204 ~~~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rl  283 (357)
                      -.|+.+.||.+++.++.+.+-..   .|++..+ -..--+++.+.--| +-.++..=|.+..+..+++|+.+...++.=-
T Consensus        27 r~~~~~l~PlLv~~~~li~~L~~---~~i~Y~~-Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs  101 (230)
T COG1346          27 RTKSPFLNPLLVATVLLIAFLLL---FGISYED-YMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVGS  101 (230)
T ss_pred             hcCCcccchHHHHHHHHHHHHHH---cCCCHHH-HhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667899999999988887776   3666543 34444555555555 6677778887665456778888887777777


Q ss_pred             HHHHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360          284 IVGPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL  354 (357)
Q Consensus       284 i~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~  354 (357)
                      ++.-...+.+.++++.|++....+.=-+.  +.....-.+++.|+-++.++..+.++=++.-+.-|...-.
T Consensus       102 ~~ai~s~~llak~~g~~~~~~~Sl~PkSv--TTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~  170 (230)
T COG1346         102 VVAIISGVLLAKLFGLSPELILSLLPKSV--TTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKL  170 (230)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHhccccc--ccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76667777788889999986655443332  2223456788999999999999988888877766655433

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=95.96  E-value=0.49  Score=42.25  Aligned_cols=142  Identities=8%  Similarity=0.024  Sum_probs=98.4

Q ss_pred             HHHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHH
Q 018360          206 RKLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIV  285 (357)
Q Consensus       206 ~~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~  285 (357)
                      ++.+.||.+++.++-+.+-..   .|++..++ .+--+.+...--| +..+++.-|.+..+..+++++++...+..=-++
T Consensus        26 ~~~~lnPvl~~~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~  100 (226)
T TIGR00659        26 KRPYLNPLLLTPLVLVGILLL---VGIPYESY-MLGGGVINDLLGP-AVVALAIPLYKQLPQIKKYWKEIILNVAVGSVI  100 (226)
T ss_pred             CCccccHHHHHHHHHHHHHHH---hCCCHHHH-HHhhHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            556789999998877766665   26665544 4455555443333 456777788776555667788877777766666


Q ss_pred             HHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360          286 GPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL  354 (357)
Q Consensus       286 ~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~  354 (357)
                      .-.....+.+.+|.|++....+.=-+.  +.....-.+++.|++++.++..+.+|=++....-|...-.
T Consensus       101 ~~~s~~~la~~lg~~~~i~~Sl~pkSv--TtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~  167 (226)
T TIGR00659       101 AIISGTLLALLLGLGPEIIASLLPKSV--TTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRY  167 (226)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHhhhHHh--hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777788889999886655444433  1223456788999999999999999888877776655443

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=94.63  E-value=0.67  Score=43.55  Aligned_cols=127  Identities=20%  Similarity=0.132  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHHhhhhhhhccccChh--hhhHHHHHHHHHHhHHHHHHHHhhcCCC--CcchHHHHHHHHHHHHHHHHHHH
Q 018360           13 ACVPLYVAMLLAYISVKWWKLFTPD--QCAGINKFVAKFSIPLLSFQVISKNNPY--KMNLKLIYADFLQKLLAFLVLVA   88 (357)
Q Consensus        13 ~ilpi~lii~lG~~~~r~~~~~~~~--~~~~L~~lv~~i~lPalif~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   88 (357)
                      .+..+++-+.+|-++.++   +++-  ..+..-..+-...+=+.++...+.+..+  +.......+..+...+++.++|.
T Consensus       166 i~~~vllP~~LG~~~r~~---~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~  242 (319)
T COG0385         166 ILLQVLLPFVLGQLLRPL---LPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYF  242 (319)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666777777322   2221  1223333444455556666666655322  22333344455677788999999


Q ss_pred             HHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcc-cchhHHHHHHHHHHHHHH
Q 018360           89 LTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYS-EEAALLLAQIVVLQSLIW  144 (357)
Q Consensus        89 ~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g-~~~~~~~~~~~~~~~~~~  144 (357)
                      .+|++|.|+.++. +...+++..| .-+|.|+....++ ...+.+..+|...|++..
T Consensus       243 ~ar~~g~~~a~~i-ti~ie~g~qn-~~lg~alA~~f~~~~~~alP~aif~~~q~~~~  297 (319)
T COG0385         243 GARLLGFDKADEI-TIAIEGGMQN-LGLGAALAAAFFGNPLMALPLAIFSVWQNMSG  297 (319)
T ss_pred             HHHHhCCChhhee-eEEEeecccc-HHHHHHHHHhcCCCchhHhHHHHHHHHHHHHH
Confidence            9999987766553 3333466667 5689999999556 344445666666555433

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=94.56  E-value=0.47  Score=44.62  Aligned_cols=142  Identities=18%  Similarity=0.127  Sum_probs=84.4

Q ss_pred             HhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHH
Q 018360          208 LIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGP  287 (357)
Q Consensus       208 ~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~P  287 (357)
                      .-.+++++|.++|++++-.    -...|+....-++.-++-....+...+|.+++... ...-.++........ ....=
T Consensus        24 ~~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~-i~~~G~~~~~~~~~~-v~~~~   97 (305)
T PF03601_consen   24 PGLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSD-ILALGWKGLLIIIIV-VILTF   97 (305)
T ss_pred             cCccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHH-HHHhCccHHHHHHHH-HHHHH
Confidence            3577889999999999931    25678899999999999999999999999997653 222233332222221 12222


Q ss_pred             HHHHHHH-HHhCCchhhHHHhhhhhc-CCcchHH-HHHHHHhCCCc---hhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018360          288 ALMAASS-FAIGLRGTLFKIAFVQAA-LPQGIVP-FVFAKEYNVHP---DILSTGVLFGMIITLPVTLAYYFLLAL  357 (357)
Q Consensus       288 li~~~~~-~~~~~~~~~~~~~vl~~a-~P~a~~~-~i~a~~~~~~~---~~aa~~v~~stllsi~tl~i~~~~l~~  357 (357)
                      .+.+.+. ..+++|++...  ++-+. .=|+... ...+..-+.++   ..+.+++++-..++++..|.....+++
T Consensus        98 ~~~~~lg~r~~~l~~~~~~--Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l~l  171 (305)
T PF03601_consen   98 LLTYWLGRRLFGLDRKLAI--LIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHALGL  171 (305)
T ss_pred             HHHHHHHHHHhCCCHHHHH--HHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHhCC
Confidence            2233334 67888876432  22211 2222222 22222333333   355566666667777788877766653

; GO: 0016021 integral to membrane

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=94.34  E-value=5  Score=38.28  Aligned_cols=103  Identities=10%  Similarity=0.115  Sum_probs=68.3

Q ss_pred             ccccChhhhhHHHHHH-----HHHHhHHHHHHHHhhcCCCC---cchHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhHH
Q 018360           31 WKLFTPDQCAGINKFV-----AKFSIPLLSFQVISKNNPYK---MNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWII  102 (357)
Q Consensus        31 ~~~~~~~~~~~L~~lv-----~~i~lPalif~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  102 (357)
                      .++++++..+..+++.     .|++.-|++--|+...|.+-   .-.+++...+.+.+...+.+.+++.+++.+..+...
T Consensus         6 ~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~~~   85 (347)
T TIGR00783         6 YNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDHSLM   85 (347)
T ss_pred             eCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHhhh
Confidence            5888998888888754     57889999999999887552   134555555566666667777777777766555422


Q ss_pred             Hh-h-hccccccchhhhHHHHHH-hcccchhHHH
Q 018360          103 TG-L-SLSSLPNSLILGIPLLRA-MYSEEAALLL  133 (357)
Q Consensus       103 ~~-~-~~~~~~N~~~lg~Pi~~~-l~g~~~~~~~  133 (357)
                      .. + .++.--+.|..|+...++ ..|.+.-.|.
T Consensus        86 ~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~  119 (347)
T TIGR00783        86 YIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIF  119 (347)
T ss_pred             eeeehhcCCCcccchhhHHHHHHHHhCCCHHHHH
Confidence            11 1 124445678888877766 6677654443

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=93.48  E-value=1.7  Score=41.14  Aligned_cols=114  Identities=13%  Similarity=0.227  Sum_probs=67.4

Q ss_pred             HhhHHHHHHHHHhhhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHHhhc--C--CCCcchHHHHH----HHHHHHHHH
Q 018360           12 AACVPLYVAMLLAYISVKWWKLFTPDQCAGINKFVAKFSIPLLSFQVISKN--N--PYKMNLKLIYA----DFLQKLLAF   83 (357)
Q Consensus        12 ~~ilpi~lii~lG~~~~r~~~~~~~~~~~~L~~lv~~i~lPalif~~~~~~--~--~~~~~~~~~~~----~~~~~~~~~   83 (357)
                      +-.+.+++-..+|-++.|+.+-.-+ ..+...+.+-...+-.+++.++.+.  +  .++.+...+..    ...-..+.+
T Consensus       162 ~L~~~vllP~~~Gq~~r~~~~~~~~-~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  240 (313)
T PF13593_consen  162 KLVLTVLLPLVLGQLLRRWVPKWVA-RHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL  240 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence            4455566667778887332221111 2345566667788888888887765  1  12223322211    112222335


Q ss_pred             HHHHHHHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcccc
Q 018360           84 LVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEE  128 (357)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~  128 (357)
                      .++|..+|.++.++.++ +.... |+-..+.-+|+|+...+|++.
T Consensus       241 ~~~~~~~r~~~~~~~d~-iA~~F-~gs~Ksl~~gvpl~~~lf~~~  283 (313)
T PF13593_consen  241 VLGWLAARLLGFSRPDR-IAVLF-CGSQKSLALGVPLASILFPGH  283 (313)
T ss_pred             HHHHHHHhhcCCChhhE-EEEEE-EcCcCcchhHHHHHHHHcccc
Confidence            56677888877666565 33333 566888999999999999875

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=93.35  E-value=4.2  Score=34.20  Aligned_cols=59  Identities=10%  Similarity=0.033  Sum_probs=43.0

Q ss_pred             HHHHHHhCCchhhHHHhhhhhcCCcchHH-HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018360          291 AASSFAIGLRGTLFKIAFVQAALPQGIVP-FVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYF  353 (357)
Q Consensus       291 ~~~~~~~~~~~~~~~~~vl~~a~P~a~~~-~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~  353 (357)
                      +.+.++.+.|..    ..+.+++|-+... ..+|+++|.|+..++..-..=.++-+.++|.+..
T Consensus        95 ~~l~~~~~~~~~----ta~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~  154 (156)
T TIGR03082        95 WLLARLTGVDPL----TAFLATSPGGASEMAALAAELGADVAFVAAMQTLRLLFVVLLVPLLAR  154 (156)
T ss_pred             HHHHHHHCCCHH----HHHHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334455566654    3467899999887 6788999999999988777777766777776543

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=93.03  E-value=5.9  Score=37.26  Aligned_cols=212  Identities=17%  Similarity=0.145  Sum_probs=116.7

Q ss_pred             HHHhhHHHHHHHHHhhhhh-hhccccChhhhhHHHHHHHHHHhHHHHHHH--HhhcCCCCcchHHHHHHHHHHHHHHHHH
Q 018360           10 VVAACVPLYVAMLLAYISV-KWWKLFTPDQCAGINKFVAKFSIPLLSFQV--ISKNNPYKMNLKLIYADFLQKLLAFLVL   86 (357)
Q Consensus        10 ~~~~ilpi~lii~lG~~~~-r~~~~~~~~~~~~L~~lv~~i~lPalif~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (357)
                      ++..++-+++.+.++|+++ |+.|+ |++ ...+..-=.-++=.+.+...  ..+++.++.......+.+.+++.+++. 
T Consensus        86 ~~~~~~~v~~~~~~~~~lg~r~~~l-~~~-~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~-  162 (305)
T PF03601_consen   86 LLIIIIVVILTFLLTYWLGRRLFGL-DRK-LAILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLY-  162 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCC-CHH-HHHHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHH-
Confidence            4456666778888889888 65554 443 34444444444444444443  334443333333222233333333332 


Q ss_pred             HHHHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCC
Q 018360           87 VALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEEAALLLAQIVVLQSLIWYNLLLFLFELNAAKSASVTPNP  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  166 (357)
                      =.+.+.+..++.+.  +.+...+--|++.-  --....+|++...++...-...++..-++...+.-..+.++       
T Consensus       163 P~l~~~l~l~~~~~--G~w~G~sIh~~aqV--vaAg~~~g~~a~~~A~ivKl~Rv~lL~pv~~~l~~~~~~~~-------  231 (305)
T PF03601_consen  163 PLLGHALGLSPQQF--GAWAGGSIHDTAQV--VAAGAIYGEEAGDVATIVKLTRVLLLGPVVLVLALFWARRQ-------  231 (305)
T ss_pred             HHHHHHhCCCHHHH--HHHhhhhhcccchH--hhhhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------
Confidence            23455565554443  34444555555542  12244578888778888877777777776664443222210       


Q ss_pred             CCCCCcccchhhhhhhhhhhhhhhcccccchhHHHHHHHHHHhhchh-HHHHHHHHHHHHhhhccCCCCcHHHHHHHHHH
Q 018360          167 ETPEEHDASQESQAKEGEEEAQNRTATRVRTTHILLTVGRKLIINPN-THATLLGLIWASIEFRWGVKLPAIIDQSVRIL  245 (357)
Q Consensus       167 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~nP~-~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~l  245 (357)
                                +++  +          ++.      +    + ..-|. +++.++..+++..     ..+|+.+.+.++.+
T Consensus       232 ----------~~~--~----------~~~------~----~-~~~P~FvlgFl~~~~l~s~-----~~~~~~~~~~~~~~  273 (305)
T PF03601_consen  232 ----------EKS--S----------GKS------K----K-VSFPWFVLGFLAASLLNSL-----GLLPAAVVSALKSL  273 (305)
T ss_pred             ----------ccc--c----------ccc------C----c-cCcCHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHH
Confidence                      000  0          000      0    1 12444 4455555555544     34788999999999


Q ss_pred             HhhHHHHHHHHhhhhhccCCcccccchHH
Q 018360          246 SNGGLGMAMFSLGLFMASRPSIIACGTRM  274 (357)
Q Consensus       246 g~~~~pl~L~~lG~~L~~~~~~~~~~~~~  274 (357)
                      ++...-++|..+|.+.+.++ ..+..+|.
T Consensus       274 s~~~~~~A~aaiGl~~~~~~-l~~~G~kp  301 (305)
T PF03601_consen  274 SKWLFALAMAAIGLSTNFKD-LKQVGWKP  301 (305)
T ss_pred             HHHHHHHHHHHHhhcCcHHH-HHhcCccc
Confidence            99999999999999998764 23344444

; GO: 0016021 integral to membrane

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=92.57  E-value=3.5  Score=42.70  Aligned_cols=137  Identities=12%  Similarity=0.072  Sum_probs=87.7

Q ss_pred             hchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHH
Q 018360          210 INPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPAL  289 (357)
Q Consensus       210 ~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli  289 (357)
                      .+|.+-|.+.|+++.-      -+....+.+.++-..+...|+-.+.+|+.++...  ....+..+...++..++.=++.
T Consensus       237 ls~~LGAFlaGl~l~~------s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~--l~~~~~~il~~~~~~l~~K~~~  308 (601)
T PRK03659        237 LSMALGTFIAGVLLAE------SEYRHELEIAIEPFKGLLLGLFFISVGMALNLGV--LYTHLLWVLISVVVLVAVKGLV  308 (601)
T ss_pred             ccHHHHHHHHHHHhcC------CchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH--HHHhHHHHHHHHHHHHHHHHHH
Confidence            5566666666666653      2334556666777778999999999999987642  2234444444555566666666


Q ss_pred             HHHHHHHhCCchhhH--HHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360          290 MAASSFAIGLRGTLF--KIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL  354 (357)
Q Consensus       290 ~~~~~~~~~~~~~~~--~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~  354 (357)
                      .+......+.+....  ....+.....-+......+.++|.=++...+.+...+++|.+..|+...+
T Consensus       309 ~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~  375 (601)
T PRK03659        309 LYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKL  375 (601)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776777777765332  22333344555556666677888755666666678888888888876543

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=92.35  E-value=2.4  Score=39.55  Aligned_cols=101  Identities=17%  Similarity=0.159  Sum_probs=70.5

Q ss_pred             HHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------hHHHhhhhhcCCcchH
Q 018360          245 LSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAASSFAIGLRGT------LFKIAFVQAALPQGIV  318 (357)
Q Consensus       245 lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~------~~~~~vl~~a~P~a~~  318 (357)
                      =++....+-+++.|.+++.+.  .....|+-......|+++.-++.+.+.+++|.++.      -...+.+.+|+-....
T Consensus        46 G~~~iig~~l~~~Ga~I~~k~--~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~Ng  123 (314)
T PF03812_consen   46 GANPIIGVFLFCMGAQIDLKS--AGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNG  123 (314)
T ss_pred             chHHHHHHHHHHhccccchhh--hhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCH
Confidence            345566778899999998764  34567888888999999999999999998887753      3445667777776666


Q ss_pred             HHH--HHHHhCCCchhHHHHHHHHHHHHHHHHH
Q 018360          319 PFV--FAKEYNVHPDILSTGVLFGMIITLPVTL  349 (357)
Q Consensus       319 ~~i--~a~~~~~~~~~aa~~v~~stllsi~tl~  349 (357)
                      ...  +.++||.++|..|.  .+..+.+-|.++
T Consensus       124 gLY~aL~~~yGd~~D~gA~--~i~sl~~GPf~t  154 (314)
T PF03812_consen  124 GLYLALMGQYGDEEDVGAF--SILSLNDGPFFT  154 (314)
T ss_pred             HHHHHHHHHhCCHHHhHHH--HHHHhhhhHHHH
Confidence            644  45688865555443  444555555444

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=92.20  E-value=4.6  Score=42.00  Aligned_cols=136  Identities=13%  Similarity=0.103  Sum_probs=83.3

Q ss_pred             chhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHH
Q 018360          211 NPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALM  290 (357)
Q Consensus       211 nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~  290 (357)
                      ++.+=|.+.|+++.-      -+.-..+.+-++-..+...|+-.+.+|+++....  ....+..+...++..++.=++..
T Consensus       241 s~~lGAFlAGl~l~~------~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~--l~~~~~~il~~~~~~~~~K~~~~  312 (621)
T PRK03562        241 SMALGAFLAGVLLAS------SEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGT--LLENPLRILILLLGFLAIKIAML  312 (621)
T ss_pred             cHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455554442      2333456666666778899999999999997642  12233344444555666666666


Q ss_pred             HHHHHHhCCchh--hHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360          291 AASSFAIGLRGT--LFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL  354 (357)
Q Consensus       291 ~~~~~~~~~~~~--~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~  354 (357)
                      +..+...+.+..  ....+.+......+.....++.+.|.=++...+.+....++|.+..|++..+
T Consensus       313 ~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~  378 (621)
T PRK03562        313 WLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVL  378 (621)
T ss_pred             HHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777777776543  2223334444666666677777777645555555666888888888876544

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=91.95  E-value=0.91  Score=43.20  Aligned_cols=100  Identities=15%  Similarity=0.050  Sum_probs=69.6

Q ss_pred             HHHHHHHhhhhhhhccccChhh---hhHHHHHHHHHHhHHHHH-HHHhhcCCCCc----chHHHHHHHHHHHHHHHHHHH
Q 018360           17 LYVAMLLAYISVKWWKLFTPDQ---CAGINKFVAKFSIPLLSF-QVISKNNPYKM----NLKLIYADFLQKLLAFLVLVA   88 (357)
Q Consensus        17 i~lii~lG~~~~r~~~~~~~~~---~~~L~~lv~~i~lPalif-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   88 (357)
                      ...++.+|.++ |..|+++++.   .+...+++.+-+.++++. -.++..++++.    .+..+..++.+.+...+.+++
T Consensus       207 ~v~mII~~vi~-k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l  285 (347)
T TIGR00783       207 YAFMILIAAAL-KAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF  285 (347)
T ss_pred             HHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence            45677888888 6799999874   456666666666666665 46666676542    355555555666666777888


Q ss_pred             HHHhhcCCchhhHHHh-hhccccccchhhh
Q 018360           89 LTKISSRSGLRWIITG-LSLSSLPNSLILG  117 (357)
Q Consensus        89 ~~~~~~~~~~~~~i~~-~~~~~~~N~~~lg  117 (357)
                      ++|+++--+.+..+++ ++++..+-+|.++
T Consensus       286 vGKllG~YPiE~aItagLC~~~~GGtGDva  315 (347)
T TIGR00783       286 LGKLMGMYPVESAITAGLCNSGMGGTGDVA  315 (347)
T ss_pred             HHHHhCCChHHHHHHHhhhccCCCCCCcee
Confidence            9999988777877764 6667777777775

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=91.32  E-value=0.27  Score=47.10  Aligned_cols=106  Identities=13%  Similarity=0.084  Sum_probs=71.7

Q ss_pred             HHHHHHhhhhhccCCcc-cccchHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHhhhhhcCCc-chHHHHHHHHhCC
Q 018360          251 GMAMFSLGLFMASRPSI-IACGTRMAAVAMALKFIVGPALMAASSFAIGLRGTLFKIAFVQAALPQ-GIVPFVFAKEYNV  328 (357)
Q Consensus       251 pl~L~~lG~~L~~~~~~-~~~~~~~~~~~~~~rli~~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~-a~~~~i~a~~~~~  328 (357)
                      -..++.+|..+...... ....-+......+.++++.|+..+.....+.++.......++.++.++ +...++.+..-+.
T Consensus       120 ~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g  199 (371)
T KOG2718|consen  120 LSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPG  199 (371)
T ss_pred             HHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCc
Confidence            35577788887654311 111122334445559999999999877666666655344555555555 4555555555588


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 018360          329 HPDILSTGVLFGMIITLPVTLAYYFLLA  356 (357)
Q Consensus       329 ~~~~aa~~v~~stllsi~tl~i~~~~l~  356 (357)
                      |...+......||+.+++.+|.|-.+++
T Consensus       200 ~v~lsilmT~~stv~avi~~pl~s~~l~  227 (371)
T KOG2718|consen  200 DVTLSILMTTISTVLAVILTPLLSILLG  227 (371)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8888999999999999999999987763

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=87.79  E-value=9.2  Score=39.76  Aligned_cols=113  Identities=18%  Similarity=0.195  Sum_probs=66.0

Q ss_pred             HHHHHhhchhHHHHHH-HHHHHHhhhccCCCC-cHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHH
Q 018360          204 VGRKLIINPNTHATLL-GLIWASIEFRWGVKL-PAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMAL  281 (357)
Q Consensus       204 ~~~~~~~nP~~ia~il-gli~~~~~~~~~~~l-P~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~  281 (357)
                      ..|+ ++.|.+++-++ |++++-.    +..+ ++  .+.+..++...+.+.||.+|..++...  .+...|.++.....
T Consensus        23 l~~r-l~lp~vlgyilaGillGP~----~lg~i~~--~~~i~~laelGvv~LlF~iGLEl~~~~--l~~~~~~~~~~g~~   93 (621)
T PRK03562         23 IAVR-LGLGSVLGYLIAGCIIGPW----GLRLVTD--VESILHFAEFGVVLMLFVIGLELDPQR--LWKLRRSIFGGGAL   93 (621)
T ss_pred             HHHH-hCCChHHHHHHHHHHhCcc----cccCCCC--HHHHHHHHHHHHHHHHHHHHhCcCHHH--HHHHHHHHHHHHHH
Confidence            4555 68888888754 7777643    2222 22  245778999999999999999997653  23344454444444


Q ss_pred             HHHHHHHHHHHHHHHhCCchhhHH-HhhhhhcCCcchHHHHHHHH
Q 018360          282 KFIVGPALMAASSFAIGLRGTLFK-IAFVQAALPQGIVPFVFAKE  325 (357)
Q Consensus       282 rli~~Pli~~~~~~~~~~~~~~~~-~~vl~~a~P~a~~~~i~a~~  325 (357)
                      -.++.-++..++.+.++.+..... .....+.+.+|+..-++.++
T Consensus        94 qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~  138 (621)
T PRK03562         94 QMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNER  138 (621)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444333333445556676554322 22334445556655555554

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom

Probab=87.59  E-value=30  Score=33.92  Aligned_cols=228  Identities=17%  Similarity=0.132  Sum_probs=114.1

Q ss_pred             hccccChhhhhHHHHHH-----HHHHhHHHHHHHHhhcCCCC---cchHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhH
Q 018360           30 WWKLFTPDQCAGINKFV-----AKFSIPLLSFQVISKNNPYK---MNLKLIYADFLQKLLAFLVLVALTKISSRSGLRWI  101 (357)
Q Consensus        30 ~~~~~~~~~~~~L~~lv-----~~i~lPalif~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (357)
                      ..++++++..+..+++.     .|++.-+++--|+...|.+-   ...+++...+.+.+...+++.+.+.+++.+..+..
T Consensus        74 ~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~i  153 (414)
T PF03390_consen   74 YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFKDAI  153 (414)
T ss_pred             HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            37999999888888876     67899999999998887552   23566666666666777777777777776655542


Q ss_pred             HHh-h-hccccccchhhhHHHHHH-hcccchhHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhcCCCCCCCCCCCccc-
Q 018360          102 ITG-L-SLSSLPNSLILGIPLLRA-MYSEEAALLLAQIVVLQSLIWYNLLLFLFEL---NAAKSASVTPNPETPEEHDA-  174 (357)
Q Consensus       102 i~~-~-~~~~~~N~~~lg~Pi~~~-l~g~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~-  174 (357)
                      ... + .++.--+.|..|+...++ ..|.+.-.+.... +.-..+-+.+++...+.   -.++..+-+.|++-...++. 
T Consensus       154 ~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~-ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~  232 (414)
T PF03390_consen  154 FYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQL-IPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDE  232 (414)
T ss_pred             HHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccc
Confidence            211 1 124445567776666533 3454443332221 11111222223322221   11110011111111000000 


Q ss_pred             chhhhhhhhhhhhhhhcccc-cc-hhHHHHHHHHHHh-hchhHHHHHHHHHHHHhhhccCCCCcHHHHHHH----HHHHh
Q 018360          175 SQESQAKEGEEEAQNRTATR-VR-TTHILLTVGRKLI-INPNTHATLLGLIWASIEFRWGVKLPAIIDQSV----RILSN  247 (357)
Q Consensus       175 ~~~~~~~e~~~~~~~~~~~~-~~-~~~~~~~~~~~~~-~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l----~~lg~  247 (357)
                      ..++++++.+.+.++-...- -. ..-.+...+.+.+ ..++.+..++..+++.+    ++ +|+.+++..    +....
T Consensus       233 ~~~~~~~~~~~~~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~----~l-vP~~~e~~a~~~~~f~~~  307 (414)
T PF03390_consen  233 EEEAKKKEKPIDFSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAF----GL-VPESLEEGAKQWYKFFSK  307 (414)
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh----Cc-CCHHHHHHHHHHHHHHHH
Confidence            00000000000000000000 00 0000111222322 45667778888888887    66 776666554    66777


Q ss_pred             hHHHHHHHHhhhhhcc
Q 018360          248 GGLGMAMFSLGLFMAS  263 (357)
Q Consensus       248 ~~~pl~L~~lG~~L~~  263 (357)
                      ..++..|+.+|....+
T Consensus       308 ~lt~~lLvgiGv~~~~  323 (414)
T PF03390_consen  308 NLTWPLLVGIGVAYTD  323 (414)
T ss_pred             HHHHHHHHHHHhhhCc
Confidence            8889999999999643

They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane

>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]

Probab=87.14  E-value=1.3  Score=38.89  Aligned_cols=99  Identities=11%  Similarity=0.168  Sum_probs=66.0

Q ss_pred             HHHHHHHhhhhhccCCcc-cccchHHHHHHHHHHHHHHHHHHHHHHHHh---CCchhhHHHhhhhhcCCcchHH-HHHHH
Q 018360          250 LGMAMFSLGLFMASRPSI-IACGTRMAAVAMALKFIVGPALMAASSFAI---GLRGTLFKIAFVQAALPQGIVP-FVFAK  324 (357)
Q Consensus       250 ~pl~L~~lG~~L~~~~~~-~~~~~~~~~~~~~~rli~~Pli~~~~~~~~---~~~~~~~~~~vl~~a~P~a~~~-~i~a~  324 (357)
                      +.-..+.-|.+|....-. -..+||.-+...+.-+.+.|...++++...   +.|+....-+.+.+|||+.+.+ +++..
T Consensus        60 va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~  139 (287)
T KOG4821|consen   60 VAWIFLQSGLGLKTESLMAAMLNWRLHLFILILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTT  139 (287)
T ss_pred             EEEEEeecCccccHHHHHHHHhCCchHHHHHHHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeee
Confidence            333344455555432100 014677777888888999999999876554   3555667778889999999988 66666


Q ss_pred             HhCCCchhHHHHHHHHHHHHHHHHHHH
Q 018360          325 EYNVHPDILSTGVLFGMIITLPVTLAY  351 (357)
Q Consensus       325 ~~~~~~~~aa~~v~~stllsi~tl~i~  351 (357)
                      .-|+|+   ++..+-|.+++..+.+..
T Consensus       140 ~aGGNa---~A~~v~S~f~g~L~~~~i  163 (287)
T KOG4821|consen  140 NAGGNA---SALCVCSVFIGNLLGAFI  163 (287)
T ss_pred             ccCccH---HHHHHHHHHHHHHhhhHH
Confidence            777665   555677777777766543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=86.06  E-value=24  Score=36.11  Aligned_cols=137  Identities=12%  Similarity=0.069  Sum_probs=81.3

Q ss_pred             hchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHH
Q 018360          210 INPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPAL  289 (357)
Q Consensus       210 ~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli  289 (357)
                      .++.+-|.+.|++++-.      +..+.+.+-..-+.+...|+-.+.+|+++....  ....+...+..++.+++.=++.
T Consensus       248 ls~~lGAflaGl~l~~~------~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~--l~~~~~~~~~~~~~~~v~K~~~  319 (558)
T PRK10669        248 VSFALGAFFAGMVLNES------ELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMI--LIQQPLAVLATLAIIVFGKSLA  319 (558)
T ss_pred             ccHHHHHHHHHHHHhCC------hhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence            35666677777776532      223334433333567889999999999987542  1122222333444455555555


Q ss_pred             HHHHHHHhCCchh-hHHHhhhh-hcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360          290 MAASSFAIGLRGT-LFKIAFVQ-AALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL  354 (357)
Q Consensus       290 ~~~~~~~~~~~~~-~~~~~vl~-~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~  354 (357)
                      .+..+...+.+.. -....+.+ .-...+.....++.+.|.=++...+.+...+++|....|.+...
T Consensus       320 ~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~  386 (558)
T PRK10669        320 AFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTL  386 (558)
T ss_pred             HHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555665433 22333333 33566666667777777655666667888888998888877543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=85.75  E-value=35  Score=34.13  Aligned_cols=38  Identities=13%  Similarity=0.215  Sum_probs=26.8

Q ss_pred             HHHHhhchhHHHHHHHHHHHHhhhc-cCCCCcHHHHHHH
Q 018360          205 GRKLIINPNTHATLLGLIWASIEFR-WGVKLPAIIDQSV  242 (357)
Q Consensus       205 ~~~~~~nP~~ia~ilgli~~~~~~~-~~~~lP~~i~~~l  242 (357)
                      +|+++++|++||+.++-.....+.. .-...|.++.+.+
T Consensus       251 ~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL  289 (466)
T KOG2532|consen  251 YKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL  289 (466)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence            7889999999999998877766210 1124677777655

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=85.33  E-value=33  Score=32.25  Aligned_cols=127  Identities=13%  Similarity=0.110  Sum_probs=68.1

Q ss_pred             hHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHHHHH
Q 018360          213 NTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPALMAA  292 (357)
Q Consensus       213 ~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli~~~  292 (357)
                      .+++.++|++++-.    .-++|+...+-.+.    ..|+.-+.+|.+++... ..+..++-+......=.+ .=.+.+.
T Consensus       169 lilpILiGmilGNl----d~~~~~~l~~Gi~f----~I~f~~f~LG~~lnl~~-I~~~G~~GIlL~v~vv~~-t~~~~~~  238 (312)
T PRK12460        169 ALLPLVLGMILGNL----DPDMRKFLTKGGPL----LIPFFAFALGAGINLSM-LLQAGLAGILLGVLVTIV-TGFFNIF  238 (312)
T ss_pred             HHHHHHHHHHHhcc----chhhHHHHhccceE----eHHHHHHHhcCCeeHHH-HHHhChHHHHHHHHHHHH-HHHHHHH
Confidence            67777788877744    33466666666554    88899999999998753 223334443333322222 2222233


Q ss_pred             HHHHhCCchhhHHHhhhhh-------cCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360          293 SSFAIGLRGTLFKIAFVQA-------ALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL  354 (357)
Q Consensus       293 ~~~~~~~~~~~~~~~vl~~-------a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~  354 (357)
                      +..+++.|+...   .+.+       |.|.|+...  ...++-..+.++.-+.-+.++..+..|+....
T Consensus       239 i~rllg~~~~~g---~li~stAGnAIcgpAAVaAa--dP~~~~~~~~Ataqvaa~vivTail~P~~t~~  302 (312)
T PRK12460        239 ADRLVGGTGIAG---AAASSTAGNAVATPLAIAAA--DPSLAPVAAAATAQVAASVIVTAILTPLLTSW  302 (312)
T ss_pred             HHHHhCCChhHH---HHHHHHhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335567666542   3333       233333321  12333334556666666666666666766543

>TIGR00698 conserved hypothetical integral membrane protein

Probab=85.20  E-value=11  Score=35.96  Aligned_cols=141  Identities=11%  Similarity=0.002  Sum_probs=76.7

Q ss_pred             hhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHH
Q 018360          209 IINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPA  288 (357)
Q Consensus       209 ~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pl  288 (357)
                      -.++.++|.++|++++-+   ...+.|+....-++.-++-..-.+...+|.+++... ...-.++...... .=....=+
T Consensus        30 ~l~~~~~AillG~~l~n~---~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~-i~~~G~~~l~~~~-~~v~~~~~  104 (335)
T TIGR00698        30 ALSALFLAILLGMVAGNT---IYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPY-IADVGPNEIVADT-LILTSTFF  104 (335)
T ss_pred             CCcHHHHHHHHHHHHhcc---ccccchhhccchHHHHHHHHHHHHHHHHCccccHHH-HHHhhHHHHHHHH-HHHHHHHH
Confidence            477788999999988743   012466777777888888888899999999998653 1112222221111 11111111


Q ss_pred             HHHHHH-HHhCCchhhHHHhhhhhc-CCcchHH-HHHHHHhCCCc---hhHHHHHHHHHHHHHHHHHHHHHHhc
Q 018360          289 LMAASS-FAIGLRGTLFKIAFVQAA-LPQGIVP-FVFAKEYNVHP---DILSTGVLFGMIITLPVTLAYYFLLA  356 (357)
Q Consensus       289 i~~~~~-~~~~~~~~~~~~~vl~~a-~P~a~~~-~i~a~~~~~~~---~~aa~~v~~stllsi~tl~i~~~~l~  356 (357)
                      +.+.+. ..+++|++..  .++-+. .=|+... ...+..-+.|+   ..+.+.+++-..++++..|.....++
T Consensus       105 ~~~~~g~k~l~l~~~~~--~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~  176 (335)
T TIGR00698       105 LTVFLGSSRLKLDKQMS--ILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS  176 (335)
T ss_pred             HHHHHHHHHhCCChhHH--HHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence            222233 4678887643  111111 1122222 22222334344   34555666666677777777766654

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>COG2855 Predicted membrane protein [Function unknown]

Probab=84.33  E-value=6.1  Score=37.37  Aligned_cols=136  Identities=18%  Similarity=0.165  Sum_probs=79.6

Q ss_pred             hchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHHHHHHHHHHHHHH
Q 018360          210 INPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAVAMALKFIVGPAL  289 (357)
Q Consensus       210 ~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~~~~~rli~~Pli  289 (357)
                      ..|+++|+++|++++.     -.+.|+....-++.-.+.-...+...+|.+++... ......+- +.....-+...=++
T Consensus        37 l~al~lAIllGi~l~~-----l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~-i~~~G~~~-v~~~~~~l~~t~~~  109 (334)
T COG2855          37 LSALTLAILLGILLGI-----LPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSD-IADVGGSG-VLIIAITLSSTFLF  109 (334)
T ss_pred             chHHHHHHHHHHHHhc-----cccchhhhccchhhhHHHHHHHHHHHHcceeeHHH-HHHcCccH-HHHHHHHHHHHHHH
Confidence            4589999999999994     34566677778888888889999999999998653 11112221 12222222233334


Q ss_pred             HHHHHHHhCCchhhHHHhhhhhc--CCcchHH-HHHHHHhCCCchhHHHHHHHHHHHHHH---HHHHHHHHh
Q 018360          290 MAASSFAIGLRGTLFKIAFVQAA--LPQGIVP-FVFAKEYNVHPDILSTGVLFGMIITLP---VTLAYYFLL  355 (357)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~vl~~a--~P~a~~~-~i~a~~~~~~~~~aa~~v~~stllsi~---tl~i~~~~l  355 (357)
                      ++.+...+++|+...   .+.++  .=|+... ...+...+-++|+.+..+..-++++.+   ..|....++
T Consensus       110 ~~~lg~~lgld~~~a---~Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l  178 (334)
T COG2855         110 AYFLGKLLGLDKKLA---LLIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLL  178 (334)
T ss_pred             HHHHHHHhCCCHHHH---HHHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHh
Confidence            445556778887643   22222  2233333 333345666777666666655555544   444444444

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=82.31  E-value=47  Score=32.29  Aligned_cols=139  Identities=14%  Similarity=0.047  Sum_probs=84.0

Q ss_pred             hhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcccccchHHHHH---HHHHHHHH
Q 018360          209 IINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSIIACGTRMAAV---AMALKFIV  285 (357)
Q Consensus       209 ~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~~~~~~~~~~~---~~~~rli~  285 (357)
                      ...|++++.+++.+++-.    |+--++.-.+.-+.+.+-.+|+++..+=.+.+.++ ..+...|....   ..+.=.+-
T Consensus        24 ~l~~~vl~~~~~~~lsnl----gli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~-i~~~g~~~l~~F~~~~~g~viG   98 (378)
T PF05684_consen   24 YLPGAVLCYLLGMLLSNL----GLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRR-ILRLGGRLLLAFLIGAVGTVIG   98 (378)
T ss_pred             hcCHHHHHHHHHHHHHHC----CCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHH-HHHhhHHHHHHHHHHHHHHHHH
Confidence            478999999999999977    64311234566677778888888776655544332 22222222221   12222222


Q ss_pred             HHHHHHHHHHHhCCchhhHHHhhhhhc--CCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 018360          286 GPALMAASSFAIGLRGTLFKIAFVQAA--LPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFL  354 (357)
Q Consensus       286 ~Pli~~~~~~~~~~~~~~~~~~vl~~a--~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~  354 (357)
                      .+ +.+.+... .+.++.++..-..++  .=-+.|-..+++.++.+++.-+..+..-++.+-+-+.+.+.+
T Consensus        99 ~~-va~~l~~~-~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l  167 (378)
T PF05684_consen   99 AV-VAFLLFGG-FLGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVMALWFAFLLAL  167 (378)
T ss_pred             HH-HHHHHHhh-cccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 22211111 123555555444443  666788899999999999998988888888887776666544

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=81.32  E-value=38  Score=32.04  Aligned_cols=58  Identities=17%  Similarity=0.226  Sum_probs=43.4

Q ss_pred             HHHhCCchhhHHHhhhhhcCCcchHH-HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360          294 SFAIGLRGTLFKIAFVQAALPQGIVP-FVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLL  355 (357)
Q Consensus       294 ~~~~~~~~~~~~~~vl~~a~P~a~~~-~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l  355 (357)
                      ....+.|..    .-+.+++|-+.+. ..+|+++|.|++.++..-.+=-++-+.++|.....+
T Consensus        76 ~r~~~~d~~----TA~~~~~PGg~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~  134 (318)
T PF05145_consen   76 RRISGLDRA----TAFFASMPGGLSEMVALAEEYGADTRRVALVQSLRLLLVVLLVPFIASLL  134 (318)
T ss_pred             HHHcCCChh----HHHHHcCCccHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            334455543    4577899999887 789999999999988877777777777788776543

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	357
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	99.24
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	97.25

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=99.24  E-value=1.1e-10  Score=109.64  Aligned_cols=141  Identities=15%  Similarity=0.090  Sum_probs=117.2

Q ss_pred             HHhhchhHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHhhHHHHHHHHhhhhhccCCcc-cccchHHHHHHHHHHHHH
Q 018360          207 KLIINPNTHATLLGLIWASIEFRWGVKLPAIIDQSVRILSNGGLGMAMFSLGLFMASRPSI-IACGTRMAAVAMALKFIV  285 (357)
Q Consensus       207 ~~~~nP~~ia~ilgli~~~~~~~~~~~lP~~i~~~l~~lg~~~~pl~L~~lG~~L~~~~~~-~~~~~~~~~~~~~~rli~  285 (357)
                      +.+.++..+..+++.+++..       .|+... .++..-....++.|+..|.+++..+-+ ..+++|........++++
T Consensus        14 ~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi   85 (332)
T 3zux_A           14 SFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAI   85 (332)
T ss_dssp             HHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            45678888888888888887       333211 133344567889999999999876411 124667777889999999


Q ss_pred             HHHHHHHHHHHhCCchhhHHHhhhhhcCCcchHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018360          286 GPALMAASSFAIGLRGTLFKIAFVQAALPQGIVPFVFAKEYNVHPDILSTGVLFGMIITLPVTLAYYFLL  355 (357)
Q Consensus       286 ~Pli~~~~~~~~~~~~~~~~~~vl~~a~P~a~~~~i~a~~~~~~~~~aa~~v~~stllsi~tl~i~~~~l  355 (357)
                      .|++++++.+.++.+++....+++.+++|++..+.++++.+|+|.+.+...+.+||+++++++|+|.+++
T Consensus        86 ~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~  155 (332)
T 3zux_A           86 MPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLML  155 (332)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998899999999999999999999999999999999999999999999999999999998875

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=97.25  E-value=0.006  Score=56.82  Aligned_cols=69  Identities=16%  Similarity=0.078  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCchhhHHHhhhccccccchhhhHHHHHHhcccc--hhHHHHHHHHHHHH
Q 018360           72 IYADFLQKLLAFLVLVALTKISSRSGLRWIITGLSLSSLPNSLILGIPLLRAMYSEE--AALLLAQIVVLQSL  142 (357)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~lg~Pi~~~l~g~~--~~~~~~~~~~~~~~  142 (357)
                      .....+...+.+.++|..+|.+|.++.++....+. ++..|+ -+|+++....||++  ......+|...|++
T Consensus       231 ~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e-~G~qNs-~lai~lA~~~F~~~p~~alp~~iy~~~q~i  301 (332)
T 3zux_A          231 FAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIE-VGMQNS-GLAAALAAAHFAAAPVVAVPGALFSVWHNI  301 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHCCCH-HHHHHHHHHHSTTCGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhh-hhhccH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            33344555677888999999988776555333453 677888 59999999999633  33345556555543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00