Citrus Sinensis ID: 018377

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
ccccccEEEccEEEEEcccccEEEEEEEEEccccccEEEEEEEccccEEEEEcccEEEccccEEEEEEEEccccccccccccccEEEEEEEEEcccccccccccccccccccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHccccccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccc
ccccEEEEcccccccccccccEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEcccccEEEEEEEccccccccccccccEEEEEEEEEcccccHHHccHHHHHccccccEEccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccccHccccccccccccccccccccccccccccHHHHccccccHHHHHcccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccc
maeelldiqplelKFTFEVKKQSTCVIQlgnksdqcvafkvkttspkkycvrpnvsiikpkaisdftvtmqaqrvappdlqckdkfliqgivvpfgtsdeditsdmfakdsgkyveEKKLRVIlmsppqspvllprngelkqdsspetslqkdralsgvenippgdgvaanaEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLreakdvqtfessKDIDELISAaedeqsrpaedaselkpaKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYlshpqnrlsll
maeelldiqpleLKFTFEVKKQSTCViqlgnksdqcvafkvkttspkkycvrpnvsiikpkaiSDFTVTMQAQRVappdlqckdKFLIQGIVVPfgtsdeditsdMFAKDSGKYVEEKKLRVILMsppqspvllprngelkqdsspetslqkdralSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKerdesraakdvqmfgttnvtnklreakdvqtfesskDIDELISAaedeqsrpaedaselkpakDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHElevlrrksnlrrvQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
*****LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFA*****YV***KLRVI*************************************************EVFETAKFAD********************************************************************************LELKLAKDFEELKLKLNVM*****************************HELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLS*********
*AEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVIL***************************************************************************************************************************************************************************************************************LFVCMVALIGLVVGYLSHPQNRLS**
MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNG***************RALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLEN**********KDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISA**************LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
**EELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP**************************************************KFADELTETKDL************************************************************E**SELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQN*****
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MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSNLRRVQVGFPLLFVCMVALIGLVVGYLSHPQNRLSLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query357 2.2.26 [Sep-21-2011]
B9DHD7386 Vesicle-associated protei yes no 0.946 0.875 0.408 1e-66
Q9SHC8239 Vesicle-associated protei no no 0.523 0.782 0.471 7e-42
Q8VZ95256 Vesicle-associated protei no no 0.406 0.566 0.503 1e-38
Q84WW5239 Vesicle-associated protei no no 0.403 0.602 0.513 5e-37
Q9LVU1220 Vesicle-associated protei no no 0.296 0.481 0.540 7e-32
Q9SYC9571 Vesicle-associated protei no no 0.422 0.264 0.424 3e-29
O82213149 Vesicle-associated protei no no 0.333 0.798 0.512 6e-29
O60119383 Vesicle-associated membra yes no 0.927 0.864 0.261 1e-13
P40075244 Vesicle-associated membra yes no 0.338 0.495 0.362 3e-12
A2VDZ9243 Vesicle-associated membra yes no 0.268 0.395 0.408 9e-12
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function desciption
 Score =  253 bits (647), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 160/392 (40%), Positives = 222/392 (56%), Gaps = 54/392 (13%)

Query: 1   MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
           M   LLDIQP  L+F  ++KKQ++CV+QL N +   VAFKVKTTSPKKYCVRPNV ++ P
Sbjct: 1   MNMPLLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAP 60

Query: 61  KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKL 120
           K+  +FTV MQA +  PPD+ CKDKFLIQ   V   T+DEDIT+ MF+K  GK++EE KL
Sbjct: 61  KSTCEFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKL 120

Query: 121 RVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPP----GDGV-------- 168
           RV L+ P  SP L P N   KQ +  E S+ KDR  S  E + P    G+ V        
Sbjct: 121 RVTLVPPSDSPELSPINTP-KQGAVFEDSILKDRLYSQSETLAPPQYEGEIVKEPRMVGH 179

Query: 169 -----AANAEVFETAKF-----------ADELTETKD------------LQWLENAKERD 200
                A NA+  +T K            A++L  TKD               + + K+ D
Sbjct: 180 DELKAADNAKELKTPKMATVDFVEDRYTANDLKATKDSYDSSRMAKETGFDPIRSHKDAD 239

Query: 201 ESRAAKDVQMFGTTNVTNKLREAKDV---QTFESSKDIDE--LISAAEDEQSRPAEDASE 255
           + RA K      TTN+   +++A D+   Q F +   +D    IS   D       D   
Sbjct: 240 DGRAIK-----ATTNLDAPMKKAMDLPRDQGFTNGIAVDSEPKISKERDVVQLQKTDGQN 294

Query: 256 LKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARKLATREKDMLKHELEV 315
           +   + + ELKL KD EE+KLK++ ++S+L++A+ TI KLME R ++++ +  L+HEL  
Sbjct: 295 V---RGLDELKLVKDIEEMKLKVDALESKLKQADSTISKLMEERSISSQHRQSLQHELAE 351

Query: 316 LRRKSNLRRVQVGFPLLFVCMVALIGLVVGYL 347
           LR K  ++ V  GFPLL+VC+VA I  V+G+ 
Sbjct: 352 LRTKKIVKEVHNGFPLLYVCVVAFIAYVIGHF 383
May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function description
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function description
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 Back     alignment and function description
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 Back     alignment and function description
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS2 PE=1 SV=3 Back     alignment and function description
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos taurus GN=VAPB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
449432791340 PREDICTED: vesicle-associated protein 2- 0.949 0.997 0.548 1e-94
359806816295 uncharacterized protein LOC100801987 [Gl 0.826 1.0 0.531 5e-94
358248386295 uncharacterized protein LOC100794670 [Gl 0.826 1.0 0.534 2e-93
225432396293 PREDICTED: vesicle-associated protein 2- 0.815 0.993 0.554 2e-92
357478585306 Vesicle-associated membrane protein-asso 0.823 0.960 0.511 7e-90
255551631304 vesicle-associated membrane protein, put 0.801 0.940 0.521 5e-89
217072786306 unknown [Medicago truncatula] 0.823 0.960 0.508 1e-88
225451130336 PREDICTED: vesicle-associated protein 2- 0.915 0.973 0.507 1e-84
359806487278 uncharacterized protein LOC100816526 [Gl 0.773 0.992 0.448 3e-71
449517920394 PREDICTED: vesicle-associated protein 2- 0.969 0.878 0.406 1e-66
>gi|449432791|ref|XP_004134182.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus] gi|449495402|ref|XP_004159830.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 192/350 (54%), Positives = 243/350 (69%), Gaps = 11/350 (3%)

Query: 1   MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
           M  EL +IQP ELKFTFE+KKQS+C+IQL NKS+Q +AFKVKTTSPKKYCVRPN  IIKP
Sbjct: 1   MTMELFEIQPAELKFTFELKKQSSCLIQLINKSEQHIAFKVKTTSPKKYCVRPNTGIIKP 60

Query: 61  KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKL 120
           K   DFTVTM AQR APPD+QCKDKFL+QG V+  GTS+EDITSD+FAKDSGK++EEKKL
Sbjct: 61  KNTCDFTVTMLAQRTAPPDMQCKDKFLVQGTVISPGTSEEDITSDVFAKDSGKHIEEKKL 120

Query: 121 RVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKF 180
           +V L S   +PVLLP NGELK DS+ ETS+ +DR  +GVENIPP   VA ++   +T K 
Sbjct: 121 KVFLASATPTPVLLPINGELKLDSNHETSMPRDRMQTGVENIPPPSKVAEDSNGLDTRKH 180

Query: 181 ADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELIS 240
            DEL        L         + A+ V+   T    ++   A++V T  S     E+  
Sbjct: 181 IDELRPVDTPVSLSPP-----YKVAEGVEKIDTCKDADENGAAENVPTRRS-----EVAE 230

Query: 241 AAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREAEHTIRKLMEARK 300
           + E+ ++ PAE   E K +KD+ EL L KDF+ELK KL +MD++L EAE TI +L + R 
Sbjct: 231 SVENIETMPAEGIEESKLSKDLPELNLTKDFQELKSKLALMDAELLEAEATIMRLKKERT 290

Query: 301 LATREKDMLKHELEVLRRKSNLRRVQVGFPLLFVCMVALIGLVVGYLSHP 350
           + T+E++MLK +LE L RKS  R +QVGFPL++V MVA I L+VGY  HP
Sbjct: 291 VTTQEREMLKRDLETL-RKSGQRSIQVGFPLMYVLMVACISLLVGYFIHP 339

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359806816|ref|NP_001241309.1| uncharacterized protein LOC100801987 [Glycine max] gi|255641982|gb|ACU21258.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|358248386|ref|NP_001239873.1| uncharacterized protein LOC100794670 [Glycine max] gi|255634614|gb|ACU17669.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225432396|ref|XP_002277190.1| PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera] gi|297736920|emb|CBI26121.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357478585|ref|XP_003609578.1| Vesicle-associated membrane protein-associated protein SCS2 [Medicago truncatula] gi|355510633|gb|AES91775.1| Vesicle-associated membrane protein-associated protein SCS2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|255551631|ref|XP_002516861.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223543949|gb|EEF45475.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|217072786|gb|ACJ84753.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225451130|ref|XP_002266266.1| PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera] gi|298204983|emb|CBI34290.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359806487|ref|NP_001240997.1| uncharacterized protein LOC100816526 [Glycine max] gi|255635548|gb|ACU18124.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449517920|ref|XP_004165992.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
TAIR|locus:2101766256 VAP27-1 "VAMP/SYNAPTOBREVIN-AS 0.406 0.566 0.503 1.4e-46
TAIR|locus:2126921239 AT4G00170 [Arabidopsis thalian 0.400 0.598 0.523 6e-46
TAIR|locus:2025585386 VAP27-2 "vamp/synaptobrevin-as 0.871 0.805 0.384 2.2e-43
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.347 0.563 0.540 4.1e-43
TAIR|locus:2055557239 PVA12 "plant VAP homolog 12" [ 0.523 0.782 0.471 9.6e-41
TAIR|locus:2008231 637 AT1G51270 [Arabidopsis thalian 0.450 0.252 0.416 2.7e-29
TAIR|locus:2061461149 AT2G23830 [Arabidopsis thalian 0.333 0.798 0.512 1.9e-28
SGD|S000000922244 SCS2 "Integral ER membrane pro 0.434 0.635 0.322 2.6e-15
POMBASE|SPBC16G5.05c383 SPBC16G5.05c "VAP family prote 0.663 0.618 0.300 4.4e-15
UNIPROTKB|Q6P7K7242 vapb "Putative uncharacterized 0.540 0.797 0.300 1.6e-14
TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 398 (145.2 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
 Identities = 74/147 (50%), Positives = 107/147 (72%)

Query:     4 ELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
             ELL ++PL+L+F FE+KKQ +C + L NK+D  VAFKVKTT+PKKYCVRPN  ++ P++ 
Sbjct:    21 ELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLPRST 80

Query:    64 SDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVI 123
              +  VTMQAQ+ AP D+QCKDKFL+QG++   G + +++T +MF+K++G  VEE KLRV 
Sbjct:    81 CEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVT 140

Query:   124 LMSPPQSPVLLPRNGELKQDSSPETSL 150
              ++PP+ P  +    E  + SSP  S+
Sbjct:   141 YVAPPRPPSPVHEGSE--EGSSPRASV 165
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0046907 "intracellular transport" evidence=TAS
GO:0000326 "protein storage vacuole" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0016021 "integral to membrane" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006605 "protein targeting" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006886 "intracellular protein transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007033 "vacuole organization" evidence=RCA
GO:0010359 "regulation of anion channel activity" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000000922 SCS2 "Integral ER membrane protein, regulates phospholipid metabolism" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPBC16G5.05c SPBC16G5.05c "VAP family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P7K7 vapb "Putative uncharacterized protein MGC76271" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B9DHD7VAP22_ARATHNo assigned EC number0.40810.94670.8756yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019831001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (293 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 2e-26
COG5066242 COG5066, SCS2, VAMP-associated protein involved in 2e-17
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.003
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score =  101 bits (253), Expect = 2e-26
 Identities = 45/108 (41%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 5   LLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
           LL I P   L F     KQ T  + L N SD+ VAFKVKTT+PK+Y VRPN  I+KP   
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGES 60

Query: 64  SDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDS 111
              T+T Q     P D + KDKF+IQ    P    D         K+ 
Sbjct: 61  VTITITRQPFDKEPGDPK-KDKFVIQYTEAPDDAKDAKEAFKRAWKNG 107

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 357
KOG0439218 consensus VAMP-associated protein involved in inos 99.93
COG5066242 SCS2 VAMP-associated protein involved in inositol 99.93
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.88
PF14874102 PapD-like: Flagellar-associated PapD-like 98.37
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 96.27
PRK10884206 SH3 domain-containing protein; Provisional 96.18
PF14646426 MYCBPAP: MYCBP-associated protein family 91.53
PRK09918230 putative fimbrial chaperone protein; Provisional 89.98
PRK09926246 putative chaperone protein EcpD; Provisional 89.3
PRK15249253 fimbrial chaperone protein StbB; Provisional 88.77
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 88.11
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 86.72
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 86.42
PRK11385236 putativi pili assembly chaperone; Provisional 86.1
PRK15246233 fimbrial assembly chaperone StbE; Provisional 86.03
PRK15295226 fimbrial assembly chaperone SthB; Provisional 84.15
PRK0440675 hypothetical protein; Provisional 83.96
PRK10884206 SH3 domain-containing protein; Provisional 83.28
PF0410269 SlyX: SlyX; InterPro: IPR007236 The SlyX protein h 83.23
PRK15299227 fimbrial chaperone protein StiB; Provisional 82.6
PRK15211229 fimbrial chaperone protein PefD; Provisional 82.55
PRK0432574 hypothetical protein; Provisional 82.2
PRK15208228 long polar fimbrial chaperone LpfB; Provisional 82.16
PF0595794 DUF883: Bacterial protein of unknown function (DUF 81.91
PRK15290243 lfpB fimbrial chaperone protein; Provisional 80.91
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=99.93  E-value=1.5e-25  Score=204.68  Aligned_cols=130  Identities=38%  Similarity=0.655  Sum_probs=116.6

Q ss_pred             CCeEEeC-CeeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCCCC
Q 018377            4 ELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC   82 (357)
Q Consensus         4 ~LL~I~P-~EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~q~   82 (357)
                      .+|.|+| .+|.|.++++++.+|.|+|+|++++++|||||||+|++||||||.|+|.||++++|.|.+|+....|.|++|
T Consensus         7 ~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v~~q~~~~~P~d~~~   86 (218)
T KOG0439|consen    7 SLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEVTHQPFEKSPPDFKS   86 (218)
T ss_pred             CccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEEEeccCccCchhhcc
Confidence            6899999 689999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             CceEEEEEEEeCCCCCccchhhhhhcccC--CCceeEEEeEEEEeCCCCCCCcCC
Q 018377           83 KDKFLIQGIVVPFGTSDEDITSDMFAKDS--GKYVEEKKLRVILMSPPQSPVLLP  135 (357)
Q Consensus        83 kDKFLVQSv~v~~g~t~~di~~e~Fkk~~--~~~V~E~KLrV~fv~p~~p~~~~~  135 (357)
                      +|||+||++.++.+ +..++ .+.|....  +..+.+.+++|.|+.+..++....
T Consensus        87 r~kF~v~~~~~~~~-~~~~~-~~~~~~~k~~~~~~~~~k~~~~~~~~~~~~~~~~  139 (218)
T KOG0439|consen   87 RHKFLIQSLKAPPP-TTRDV-VDLWKFQKETPKESFETKLRVVFVAPTETDSVVA  139 (218)
T ss_pred             cceEEEEEEecCCc-cccch-hhhccccccccccccceeeEEEeeCCCCCccccc
Confidence            99999999999976 23333 46777666  889999999999998887755543

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PRK09918 putative fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK09926 putative chaperone protein EcpD; Provisional Back     alignment and domain information
>PRK15249 fimbrial chaperone protein StbB; Provisional Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PRK11385 putativi pili assembly chaperone; Provisional Back     alignment and domain information
>PRK15246 fimbrial assembly chaperone StbE; Provisional Back     alignment and domain information
>PRK15295 fimbrial assembly chaperone SthB; Provisional Back     alignment and domain information
>PRK04406 hypothetical protein; Provisional Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function Back     alignment and domain information
>PRK15299 fimbrial chaperone protein StiB; Provisional Back     alignment and domain information
>PRK15211 fimbrial chaperone protein PefD; Provisional Back     alignment and domain information
>PRK04325 hypothetical protein; Provisional Back     alignment and domain information
>PRK15208 long polar fimbrial chaperone LpfB; Provisional Back     alignment and domain information
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD Back     alignment and domain information
>PRK15290 lfpB fimbrial chaperone protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 1e-12
2rr3_A130 Solution Structure Of The Complex Between Human Vap 7e-12
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 8e-12
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 2e-11
1z9l_A128 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp 6e-11
1wic_A152 Solution Structure Of The Msp Domain Of Riken Cdna 5e-05
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure 
Iteration: 1

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 3   EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPK 61
           E++L ++P  ELKF        T  ++LGN +D+ V FKVKTT+P++YCVRPN  II   
Sbjct: 7   EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAG 66
Query: 62  AISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
           A  + +V +Q      P+ + K KF++Q +  P  TSD
Sbjct: 67  ASINVSVMLQPFDYD-PNEKSKHKFMVQSMFAPTDTSD 103
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128 Back     alignment and structure
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna 6030424e15 Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 1e-32
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 2e-32
2cri_A147 Vesicle-associated membrane protein-associated pro 4e-30
1z9l_A128 Vesicle-associated membrane protein-associated pro 2e-29
1m1s_A116 WR4; structural genomics, major sperm protein, bio 8e-25
1row_A109 SSP-19, MSP-domain protein like family member; bet 1e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
 Score =  118 bits (297), Expect = 1e-32
 Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 4   ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKA 62
            LL I P  EL F      +   +I L N +   VAFKV+TT+P+KY V+P+ S   P A
Sbjct: 17  PLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGA 76

Query: 63  ISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKD-SGKYVEEKKLR 121
             D  V+          +  +D+FLI    +   +         F K+     V E +LR
Sbjct: 77  SIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLR 132

Query: 122 VILMSPPQSPVLLPRNGE 139
              +   +   L+     
Sbjct: 133 CHTVESSKPNSLMLSGPS 150
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 100.0
2cri_A147 Vesicle-associated membrane protein-associated pro 100.0
1z9l_A128 Vesicle-associated membrane protein-associated pro 100.0
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 99.97
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.94
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.94
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 98.14
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 97.76
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 97.68
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 97.16
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 95.29
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 94.43
3q48_A257 Chaperone CUPB2; IG fold, periplasmic chaperone; 2 89.4
2co7_B221 SAFB chaperone, putative fimbriae assembly chapero 86.37
2xg5_A218 PAPD, chaperone protein PAPD; chaperone, chaperone 85.24
3efg_A78 Protein SLYX homolog; xanthomonas campestris PV. c 83.06
1klf_A205 FIMC chaperone, chaperone protein FIMC; adhesin-ch 82.83
4djm_A239 DRAB; chaperone, PILI; 2.52A {Escherichia coli} 80.3
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
Probab=100.00  E-value=4.5e-35  Score=257.01  Aligned_cols=129  Identities=29%  Similarity=0.420  Sum_probs=119.5

Q ss_pred             CCCeEEeCC-eeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCCC
Q 018377            3 EELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQ   81 (357)
Q Consensus         3 s~LL~I~P~-EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~q   81 (357)
                      ..+|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++|||||+.|+|.||++++|.|+||++.+    ..
T Consensus        16 ~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~~   91 (152)
T 1wic_A           16 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----VS   91 (152)
T ss_dssp             CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----CC
T ss_pred             CCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----CC
Confidence            369999998 8999999999999999999999999999999999999999999999999999999999999853    37


Q ss_pred             CCceEEEEEEEeC--CCCCccchhhhhhcccCCCceeEEEeEEEEeCCCCCCCcCCC
Q 018377           82 CKDKFLIQGIVVP--FGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPR  136 (357)
Q Consensus        82 ~kDKFLVQSv~v~--~g~t~~di~~e~Fkk~~~~~V~E~KLrV~fv~p~~p~~~~~~  136 (357)
                      |+|||+||++.++  ++++..|+. ++|++..+..++++||||+|+.+++|+++++.
T Consensus        92 ~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~  147 (152)
T 1wic_A           92 AQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLS  147 (152)
T ss_dssp             SSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCC
T ss_pred             CCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCcccc
Confidence            8999999999999  566666775 89999888999999999999999999999877
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Back     alignment and structure
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Back     alignment and structure
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C Back     alignment and structure
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 357
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 7e-33
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 1e-30
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 2e-22
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 1e-21
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  117 bits (295), Expect = 7e-33
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 4   ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKA 62
            LL I P  EL F      +   +I L N +   VAFKV+TT+P+KY V+P+ S   P A
Sbjct: 17  PLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGA 76

Query: 63  ISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKD-SGKYVEEKKLR 121
             D  V+          +  +D+FLI    +   +         F K+     V E +LR
Sbjct: 77  SIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLR 132

Query: 122 VILMSPPQSP 131
              +   +  
Sbjct: 133 CHTVESSKPN 142
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 99.97
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 99.96
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.89
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.89
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 93.61
d1p5va1141 Chaperone protein Caf1m {Yersinia pestis [TaxId: 6 92.69
d3bwuc1121 Periplasmic chaperone FimC {Escherichia coli [TaxI 90.66
d2j2za1124 Pilus chaperone PapD, N-domain {Escherichia coli [ 90.06
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.8e-31  Score=230.14  Aligned_cols=128  Identities=29%  Similarity=0.409  Sum_probs=114.6

Q ss_pred             CCeEEeCC-eeEEeccCCceeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCcceeCCCCeEEEEEEeccCCCCCCCCCC
Q 018377            4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC   82 (357)
Q Consensus         4 ~LL~I~P~-EL~F~~e~~kq~sc~LtLtN~Sd~~VAFKVKTTsPkkY~VRPn~GvI~P~ss~~V~VTmqa~~e~P~d~q~   82 (357)
                      +||.|+|. +|+|.++.+++++|.|+|+|.++++||||||||+|++|+|||++|+|.||++++|.|++++..    .++|
T Consensus        17 ~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~~~~----~~~~   92 (152)
T d1wica_          17 PLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGL----TVSA   92 (152)
T ss_dssp             SSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSS----CCCS
T ss_pred             CeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEECCCC----cccC
Confidence            69999996 799999999999999999999999999999999999999999999999999999999998653    4688


Q ss_pred             CceEEEEEEEeCCCCC--ccchhhhhhcccCCCceeEEEeEEEEeCCCCCCCcCCC
Q 018377           83 KDKFLIQGIVVPFGTS--DEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPR  136 (357)
Q Consensus        83 kDKFLVQSv~v~~g~t--~~di~~e~Fkk~~~~~V~E~KLrV~fv~p~~p~~~~~~  136 (357)
                      +|||+|+++.++++.+  ..|+ .+||+...+..++++||+|+|+.++.|++++..
T Consensus        93 kdKFli~~~~v~~~~~~~~~d~-~~~wk~~~~~~i~~~kLkv~~~~~~~p~s~~~~  147 (152)
T d1wica_          93 QDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLS  147 (152)
T ss_dssp             SCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCC
T ss_pred             CCcEEEEEEEeCCCCCCCccCH-HHHhhcCCcCcEEEEEEEEEEeCCCCCCCcccc
Confidence            9999999999976543  2454 478988888899999999999999988877654
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure