Citrus Sinensis ID: 018387

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
MAAAIAVSSPNPTILQNLIAIRDSSSGFFGGTLSGFSFQLKSRSRKRDISTLVVASSSAAGDITRSSKSDSGRFYLNFTGFPFPLGPFLNRRTIRTEVVKGRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKGLD
cccEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEccccccccEEEEccEEEEEEEccccEEEEccccccHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHccccEEEEccccccccccccccccccccccccccccccccccccccEEEccccccccccccEEEEEEccccEEEEEcccccccccccccccHHHHHHHHcccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccEEccEEEEEEcccccccccc
cEEEEEEEccccccccccccccccccccccccccccccEccccccccccccEEEEEcccccccccccccccccEEEEcccccccccccccccEEEEEEccccEEEEEccccEEEEEEEEcEEEEEEEEccccEEEEccccccHHHHHHHHHccccEEEEEEccHHHHHHEccHHHHHHccccEEEEcccccccccccccHHccccccccccccccccccHHHHHHHHccccccccccEEEEEEEEccccEEEEEEEEEEccccccccccccHHHHHcccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccHccccccHHHHHcccccccHHHHHEEcccccHHHcc
maaaiavsspnptiLQNLIAirdsssgffggtlsgFSFQlksrsrkrdiSTLVVasssaagditrssksdsgrfylnftgfpfplgpflnrrtiRTEVVKGRIWLFEQEqalgfssvsTNIRMTVIKLksgglwvhapiaptKECIQLVKELAApveyiilptfayehkifvgpfsrkfpraqiwvaprqwswplnlplaffGIFRaktlidedlstpwadEIEQKvlsspevgigpyvevafyhkpsrtllvtdavifvprkppeciskESLLASAKNGLAVKILskgkevpqepvvdnpmnqqkgWERMVLQILflgpsnllepnasfAQMSQKLIVSPIVKTLVFskvpekgld
maaaiavsspnptILQNLIAIRDSSSGFFGGTLSGFSFqlksrsrkrdistlvvasssaagditrssksdsgrFYLNFTgfpfplgpflnRRTIRTEVVKGRIWLFEQeqalgfssvstNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSkgkevpqepvvdnPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTlvfskvpekgld
MAAAIAVSSPNPTILQNLIAIRDsssgffggtlsgfsfQLKSRSRKRDISTLVVASSSAAGDITRSSKSDSGRFYLNFTgfpfplgpflNRRTIRTEVVKGRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKGLD
************TILQNLIAIRDSSSGFFGGTLSGFSFQ*********************************RFYLNFTGFPFPLGPFLNRRTIRTEVVKGRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKIL*******************KGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFS********
***A****SPNPTILQN********************************************************FYLNFTGFPFPLGPFLNRRTIRTEVVKGRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVP*****
********SPNPTILQNLIAIRDSSSGFFGGTLSGFSFQLKSRSRKRDISTLVV**************SDSGRFYLNFTGFPFPLGPFLNRRTIRTEVVKGRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFS********
MAAAIAVSSPNPTILQNLIAIRDSSSGFFGGTLSGFSFQLKSRSRKR**ST*******************SGRFYLNFTGFPFPLGPFLNRRTIRTEVVKGRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVP*****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAAIAVSSPNPTILQNLIAIRDSSSGFFGGTLSGFSFQLKSRSRKRDISTLVVASSSAAGDITRSSKSDSGRFYLNFTGFPFPLGPFLNRRTIRTEVVKGRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKGLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
225452938452 PREDICTED: uncharacterized protein LOC10 0.997 0.787 0.840 1e-167
224141045457 predicted protein [Populus trichocarpa] 1.0 0.781 0.832 1e-166
356573155449 PREDICTED: uncharacterized protein LOC10 0.980 0.779 0.822 1e-165
356551061 461 PREDICTED: uncharacterized protein LOC10 0.980 0.759 0.813 1e-164
357496659450 hypothetical protein MTR_6g013750 [Medic 0.991 0.786 0.815 1e-163
388515241450 unknown [Medicago truncatula] 0.991 0.786 0.815 1e-163
225452940444 PREDICTED: uncharacterized protein LOC10 0.974 0.783 0.817 1e-160
356573157441 PREDICTED: uncharacterized protein LOC10 0.957 0.775 0.799 1e-158
449447406447 PREDICTED: uncharacterized protein LOC10 0.980 0.782 0.807 1e-156
255570220 465 conserved hypothetical protein [Ricinus 0.983 0.754 0.760 1e-151
>gi|225452938|ref|XP_002284191.1| PREDICTED: uncharacterized protein LOC100268024 isoform 1 [Vitis vinifera] gi|296082978|emb|CBI22279.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 300/357 (84%), Positives = 319/357 (89%), Gaps = 1/357 (0%)

Query: 1   MAAAIAVSSPNPTILQNLIAIRDSSSGFFGGTLSGFSFQLKSRSRKRDISTLVVASSSAA 60
           M AA+AV SP  ++LQN I+ R  +S F GG+L G   QLK R+R RD   LVVAS+S++
Sbjct: 1   MVAAVAVFSPKSSLLQNPISFRGPNSSFLGGSLKGLCLQLKPRNRSRDFINLVVASASSS 60

Query: 61  GDITRSSKSDSGRFYLNFTGFPFPLGPFLNRRTIRTEVVKGRIWLFEQEQALGFSSVSTN 120
              + ++ S  GRFYLNFTGFPFPLGPFLNRRTIRTE VK  IWLFEQEQALGFSSVSTN
Sbjct: 61  -SSSSTNSSGGGRFYLNFTGFPFPLGPFLNRRTIRTEAVKDCIWLFEQEQALGFSSVSTN 119

Query: 121 IRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFSRKFP 180
           IRMTVIKLKSGGLWVHAPIAPTKECIQLVKEL APVEYIILPTFAYEHKIFVGPFSRKFP
Sbjct: 120 IRMTVIKLKSGGLWVHAPIAPTKECIQLVKELGAPVEYIILPTFAYEHKIFVGPFSRKFP 179

Query: 181 RAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVE 240
           +AQIWVAPRQWSWPLNLPL FFGIFRAKTL DED+STPWA EIEQKVLSSPEVGIGPYVE
Sbjct: 180 QAQIWVAPRQWSWPLNLPLEFFGIFRAKTLKDEDMSTPWASEIEQKVLSSPEVGIGPYVE 239

Query: 241 VAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDN 300
           VAFYHK SRTLLVTDAVIFVPR+PPECISKESLLASAKNGLAVK+LSKGKEVP+E VVDN
Sbjct: 240 VAFYHKRSRTLLVTDAVIFVPRQPPECISKESLLASAKNGLAVKLLSKGKEVPEESVVDN 299

Query: 301 PMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKGLD 357
            MN+QKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEK  D
Sbjct: 300 KMNRQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRD 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224141045|ref|XP_002323885.1| predicted protein [Populus trichocarpa] gi|222866887|gb|EEF04018.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356573155|ref|XP_003554729.1| PREDICTED: uncharacterized protein LOC100818397 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356551061|ref|XP_003543897.1| PREDICTED: uncharacterized protein LOC100811507 [Glycine max] Back     alignment and taxonomy information
>gi|357496659|ref|XP_003618618.1| hypothetical protein MTR_6g013750 [Medicago truncatula] gi|355493633|gb|AES74836.1| hypothetical protein MTR_6g013750 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388515241|gb|AFK45682.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225452940|ref|XP_002284198.1| PREDICTED: uncharacterized protein LOC100268024 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356573157|ref|XP_003554730.1| PREDICTED: uncharacterized protein LOC100818397 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|449447406|ref|XP_004141459.1| PREDICTED: uncharacterized protein LOC101203804 [Cucumis sativus] gi|449521942|ref|XP_004167988.1| PREDICTED: uncharacterized LOC101203804 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255570220|ref|XP_002526070.1| conserved hypothetical protein [Ricinus communis] gi|223534567|gb|EEF36264.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
TAIR|locus:2102162455 AT3G01060 "AT3G01060" [Arabido 0.885 0.694 0.801 5.6e-132
ASPGD|ASPL0000078194269 AN4711 [Emericella nidulans (t 0.436 0.579 0.288 7.6e-05
TAIR|locus:2102162 AT3G01060 "AT3G01060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1294 (460.6 bits), Expect = 5.6e-132, P = 5.6e-132
 Identities = 254/317 (80%), Positives = 275/317 (86%)

Query:    42 SRSRKRDISTLVVASSSAAGDITRSSKSD-SGRFYLNFTXXXXXXXXXXNRRTIRTEVVK 100
             S +R+ +   +V ASS++   +T     D S RFY+NFT          NRRTIRTE VK
Sbjct:    42 SVNREFNSPVMVSASSTSKTVLTDDVDGDQSKRFYINFTGFPFPLGPFLNRRTIRTEAVK 101

Query:   101 GRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYII 160
             G IW+FEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKEC+QL+KEL APVEYI+
Sbjct:   102 GCIWMFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECVQLIKELGAPVEYIV 161

Query:   161 LPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWA 220
             LPTFAYEHKIFVGPFSRKFP+AQ+WVAPRQWSWPLNLPL FFGIFRAK + D DLSTPWA
Sbjct:   162 LPTFAYEHKIFVGPFSRKFPKAQVWVAPRQWSWPLNLPLEFFGIFRAKIIKDRDLSTPWA 221

Query:   221 DEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLASAKNG 280
             +EIEQKVLSSPEVGIGPYVEVAFYHK SRTLLVTDAVIFVPRKPP  IS ESLLASAKNG
Sbjct:   222 EEIEQKVLSSPEVGIGPYVEVAFYHKRSRTLLVTDAVIFVPRKPPSSISNESLLASAKNG 281

Query:   281 LAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVS 340
             LAVKILSKGK++P +PVVDNP  +QKGWERMVLQILFLGPSNLLEPNASFA+MSQKLIVS
Sbjct:   282 LAVKILSKGKDIPNDPVVDNPNTRQKGWERMVLQILFLGPSNLLEPNASFARMSQKLIVS 341

Query:   341 PIVKTLVFSKVPEKGLD 357
             PIVKTLVFSKVPEK  D
Sbjct:   342 PIVKTLVFSKVPEKVRD 358
GO:0003674 "molecular_function" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0007623 "circadian rhythm" evidence=IEP
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA
ASPGD|ASPL0000078194 AN4711 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00021037001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (452 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00028499001
RecName- Full=Photosystem II reaction center psb28 protein; (179 aa)
• ••    0.688
GSVIVG00022571001
SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_27, whole genome shot [...] (378 aa)
  ••    0.610
GSVIVG00001938001
SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (229 aa)
  ••    0.592
GSVIVG00019398001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (323 aa)
  ••    0.570
GSVIVG00006111001
SubName- Full=Chromosome chr14 scaffold_164, whole genome shotgun sequence; (332 aa)
• ••    0.551
GSVIVG00007992001
SubName- Full=Chromosome undetermined scaffold_1173, whole genome shotgun sequence; Flags- Frag [...] (120 aa)
  •     0.502
GSVIVG00011351001
SubName- Full=Chromosome undetermined scaffold_2548, whole genome shotgun sequence; (212 aa)
  •     0.500
GSVIVG00011540001
SubName- Full=Chromosome undetermined scaffold_314, whole genome shotgun sequence; (338 aa)
  •     0.495
GSVIVG00024786001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (114 aa)
  •     0.494
GSVIVG00024783001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (133 aa)
  •     0.490

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
pfam14234314 pfam14234, DUF4336, Domain of unknown function (DU 1e-125
>gnl|CDD|206402 pfam14234, DUF4336, Domain of unknown function (DUF4336) Back     alignment and domain information 
 Score =  362 bits (931), Expect = e-125
 Identities = 132/291 (45%), Positives = 181/291 (62%), Gaps = 45/291 (15%)

Query: 100 KGRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAA---PV 156
            G+IW FEQ Q + +  V+  IRMTV+KLK GGLWV+AP+APT EC++L++EL A   PV
Sbjct: 1   PGQIWTFEQLQGILY--VAVPIRMTVVKLKDGGLWVYAPVAPTPECVRLLEELEAEHGPV 58

Query: 157 EYIILPTF-AYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDL 215
           +YI+LPT    EHK+FVGPF+R FP+AQ+WVAP QWS+PLNLPL++ GI R +TL  +  
Sbjct: 59  KYIVLPTASGLEHKVFVGPFARAFPKAQVWVAPGQWSFPLNLPLSWLGIPRTRTLPLDSD 118

Query: 216 STPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDAVIFVPRKPPECISKESLLA 275
            TPWADE +  VL   ++G+GP+ EVAF+HKPS+TLLVTDA++ +P +PPE    + L  
Sbjct: 119 GTPWADEFDYAVLGPLDLGLGPFQEVAFFHKPSKTLLVTDALVSIPEEPPEIFDLDPLP- 177

Query: 276 SAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPN-------- 327
                    +L   ++   EPV D P  ++KGW+R+VL  L+  PS L  P         
Sbjct: 178 ---------LLFHARDRADEPVEDTPEARRKGWQRIVLFALYFRPSALEVPPAPEVLREA 228

Query: 328 ---------------------ASFAQMSQKLIVSPIVKTLVFSKVPEKGLD 357
                                ASF  +  +L V+PI++TLVF + PE+ L 
Sbjct: 229 FKPGLRSKFGLFPFRWQPGWQASFQALRGRLQVAPILQTLVFPRAPEEVLA 279

Length = 314

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 357
PF14234285 DUF4336: Domain of unknown function (DUF4336) 100.0
PF14597199 Lactamase_B_5: Metallo-beta-lactamase superfamily; 98.79
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 96.54
PLN02469258 hydroxyacylglutathione hydrolase 95.96
PLN02398329 hydroxyacylglutathione hydrolase 95.02
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 95.0
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 94.75
PLN02962251 hydroxyacylglutathione hydrolase 94.5
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 93.99
COG0426 388 FpaA Uncharacterized flavoproteins [Energy product 92.6
PRK11921 394 metallo-beta-lactamase/flavodoxin domain-containin 92.36
PRK05452 479 anaerobic nitric oxide reductase flavorubredoxin; 91.33
>PF14234 DUF4336: Domain of unknown function (DUF4336) Back     alignment and domain information 
Probab=100.00  E-value=3.2e-81  Score=600.97  Aligned_cols=246  Identities=48%  Similarity=0.914  Sum_probs=234.8

Q ss_pred             cCcEEEEeeecccccceeeccceEEEEEEcCCcEEEEcCCCCCHHHHHHHHHh---cCCeeEEEeCCCccccccChHHHH
Q 018387          100 KGRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKEL---AAPVEYIILPTFAYEHKIFVGPFS  176 (357)
Q Consensus       100 ~~~IWt~eq~~~i~~~~v~vg~RMTVVRL~dG~L~V~SPValT~E~~~~L~~L---Gg~VkyIVaPn~s~EH~lfl~~w~  176 (357)
                      +|+||++||+|++.  ++.+|+|||||||++|+|||||||++|+||+++|++|   +|+|+|||+||..+|||+|+++|+
T Consensus         1 p~~IW~~eq~~~~~--~v~v~~RMTVVrL~~G~L~VhSPvapT~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~   78 (285)
T PF14234_consen    1 PDQIWTFEQPQGIF--YVPVPTRMTVVRLSDGGLWVHSPVAPTPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWA   78 (285)
T ss_pred             CCcEEEEecccccc--ceeecceEEEEEECCCCEEEECCCCCCHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHH
Confidence            58999999999755  5999999999999999999999999999999999999   349999999997789999999999


Q ss_pred             HhCCCCeEEeCCCCcCCCCCCCcceeccccccccCCCCCCCcccCCeeEEEccCCCCCCCCceEEEEEEcCCceEEEecc
Q 018387          177 RKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDA  256 (357)
Q Consensus       177 ~~FP~Akv~~~pg~~s~p~~lpl~~~gi~~~~~L~~~~~~~pw~~efd~~~l~~~~~g~~~~~EvvffHKpSkTLIvtDl  256 (357)
                      ++||+|++|+|||+|++|.+++++|.|++.++.+.++....+|++|||+++|++.++|++.|+|++||||+|||||+||+
T Consensus        79 ~afP~A~v~~~Pg~~s~p~~lp~~~~g~~~~~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfHk~SkTLIvTDl  158 (285)
T PF14234_consen   79 RAFPDAKVWAPPGQWSFPLNLPLSWLGIPRDKTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFHKPSKTLIVTDL  158 (285)
T ss_pred             HHCCCCEEEeCCCcccccccCchhhcCCccccccccccCCCCchhheeeEEecccccCCCceeEEEEEECCCCeEEhhhc
Confidence            99999999999999999999999999999888887766788999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCcccccchhhhccccchhhhhcccCCCCCCCCCCCChHHHhhhhhhhhhhhhhhCCCCCCCcchhHHhhcCC
Q 018387          257 VIFVPRKPPECISKESLLASAKNGLAVKILSKGKEVPQEPVVDNPMNQQKGWERMVLQILFLGPSNLLEPNASFAQMSQK  336 (357)
Q Consensus       257 l~Nlp~~ppEq~s~~pll~~~~~g~~trll~~~~~~~~~~~~d~~~~r~~GW~r~~lf~~~~~P~~l~~~~~sf~~~~~~  336 (357)
                      ++|+|+++|++++.+|          +++++|+||.++++++||+|+|+|||+|||||++||+|++|++|+.||++|++|
T Consensus       159 l~nip~~~p~~~~~d~----------~pll~~ar~~~~~~~~d~~~~r~~GW~r~~Lf~~y~~P~~l~~~~~sf~~~~~~  228 (285)
T PF14234_consen  159 LFNIPATPPEIFQLDP----------YPLLFHARDRADEPVEDTPENRRKGWQRMVLFALYFRPSALEVPEASFDALSGR  228 (285)
T ss_pred             hhhCCCCCCcccCCCc----------cchhhcccCCCCCCCCCCHHHHhhhHHHHhHhheeeccccccCchhhHHHHhCC
Confidence            9999999999999988          778888899999999999999999999999999999999999999999999999


Q ss_pred             eeeCceEeeeecCCCCcccCC
Q 018387          337 LIVSPIVKTLVFSKVPEKGLD  357 (357)
Q Consensus       337 l~v~Pil~~lv~~~~~~~~~~  357 (357)
                      |+||||||||||+|+|++|++
T Consensus       229 l~vaPil~~Lv~~r~~~~~~~  249 (285)
T PF14234_consen  229 LFVAPILQTLVFPRAPEEVLA  249 (285)
T ss_pred             ceeCcchhheeccCCcHHHHH
Confidence            999999999999999999864

>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
2p97_A201 Hypothetical protein; putative metal-dependent hyd 98.67
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 97.85
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 97.6
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 97.59
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 97.54
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 97.45
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 97.38
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 97.29
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 97.19
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 97.16
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 97.06
2ohh_A 404 Type A flavoprotein FPRA; beta-lactamase like doma 96.99
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 96.99
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 96.93
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 96.79
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 96.65
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 96.55
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 96.53
1ycg_A 398 Nitric oxide reductase; DIIRON site, oxidoreductas 96.52
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 96.34
1e5d_A 402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 96.12
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 95.99
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 95.99
2cfu_A 658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 95.56
2q9u_A 414 A-type flavoprotein; flavodoxin like, beta lactama 95.45
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 95.42
1xm8_A254 Glyoxalase II; structural genomics, protein struct 94.75
3r2u_A 466 Metallo-beta-lactamase family protein; structural 94.74
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 94.33
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 94.31
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 94.29
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 93.75
4efz_A298 Metallo-beta-lactamase family protein; structural 93.71
3tp9_A 474 Beta-lactamase and rhodanese domain protein; struc 93.65
3esh_A280 Protein similar to metal-dependent hydrolase; stru 93.43
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 93.24
4dik_A 410 Flavoprotein; TM0755, electron transport, DI-iron 93.09
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 90.21
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 89.68
1ztc_A221 Hypothetical protein TM0894; structural genomics, 88.66
2yhe_A 668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 88.08
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 85.76
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
Probab=98.67  E-value=5.4e-07  Score=79.34  Aligned_cols=138  Identities=14%  Similarity=0.060  Sum_probs=102.1

Q ss_pred             EEc-CcEEEEeeecccccceeeccceEEEEEEcCCcEEEEcCCCCCHHHHHHHHHhcCCeeEEEeCCCccccccChHHHH
Q 018387           98 VVK-GRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPFS  176 (357)
Q Consensus        98 ~v~-~~IWt~eq~~~i~~~~v~vg~RMTVVRL~dG~L~V~SPValT~E~~~~L~~LGg~VkyIVaPn~s~EH~lfl~~w~  176 (357)
                      .+. ++||.+......    ..++.++.+|+. +++.+|+.|-..++++.+.|+++| +|+|||+.+.  -|.-.+..|+
T Consensus         4 ~i~~~~v~~~~~~~~~----~~~~~n~~li~~-~~~~iliD~g~~~~~~~~~l~~~g-~i~~ii~TH~--DH~gg~~~~~   75 (201)
T 2p97_A            4 SLHRPDLYSWSTFNPA----RNIDFNGFAWIR-PEGNILIDPVALSNHDWKHLESLG-GVVWIVLTNS--DHVRSAKEIA   75 (201)
T ss_dssp             ECSSTTEEEEEEEETT----TTEEEEEEEECC-TTCCEEESCCCCCHHHHHHHHHTT-CCSEEECSSG--GGCTTHHHHH
T ss_pred             cccCCCEEeeecccCC----CCcceeEEEEEe-CCeeEEEECCCCcHHHHHHHHhcC-CCCEEEECCc--hhhhhHHHHH
Confidence            366 889999864431    235789999998 456788899888899999999999 9999999996  8999999999


Q ss_pred             HhCCCCeEEeCCCCcCCCCCCCcceeccccccccCCCCCCCcccCCeeEEEccCCCCCCCCceEEEEEEcCCceEEEecc
Q 018387          177 RKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTDA  256 (357)
Q Consensus       177 ~~FP~Akv~~~pg~~s~p~~lpl~~~gi~~~~~L~~~~~~~pw~~efd~~~l~~~~~g~~~~~EvvffHKpSkTLIvtDl  256 (357)
                      ++|+ |++|+.+.....-...+        +..+.+   ...+..+++.....    +.|....++++++. ++|+.+|+
T Consensus        76 ~~~~-a~v~~~~~~~~~~~~~~--------~~~~~~---g~~~~~~~~~~~~p----~gHt~g~~~~~~~~-~~lf~GD~  138 (201)
T 2p97_A           76 DQTY-TKIAGPVAEKENFPIYC--------DRWLSD---GDELVPGLKVMELQ----GSKTPGELALLLEE-TTLITGDL  138 (201)
T ss_dssp             HHSC-CEEEEEGGGTTSCSSCC--------SEEECT---TCBSSTTEEEEEEC----SSSSTTEEEEEETT-TEEEECSS
T ss_pred             HhcC-CEEEEcHhHhhhhcccC--------ceecCC---CCEEcceEEEEECC----CCCCCCcEEEEEcC-CEEEECcc
Confidence            9996 99999987543211100        111211   11233356666552    26778899999987 99999999


Q ss_pred             cccC
Q 018387          257 VIFV  260 (357)
Q Consensus       257 l~Nl  260 (357)
                      +++-
T Consensus       139 ~~~~  142 (201)
T 2p97_A          139 VRAY  142 (201)
T ss_dssp             EEBS
T ss_pred             cccc
Confidence            9876
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 99.08
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 97.69
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 97.44
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 97.34
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 97.24
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 97.22
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 97.12
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 96.9
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 96.18
d2cfua2 505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 96.01
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 95.14
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 94.83
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 94.72
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 94.63
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 93.87
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 91.3
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 89.5
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 84.99
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Ava3068-like
domain: Hypothetical protein Ava3068
species: Anabaena variabilis [TaxId: 1172]

Probab=99.08  E-value=8.7e-10  Score=96.18  Aligned_cols=142  Identities=11%  Similarity=0.016  Sum_probs=99.9

Q ss_pred             EEEEcCcEEEEeeecccccceeeccceEEEEEEcCCcEEEEcCCCCCHHHHHHHHHhcCCeeEEEeCCCccccccChHHH
Q 018387           96 TEVVKGRIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTKECIQLVKELAAPVEYIILPTFAYEHKIFVGPF  175 (357)
Q Consensus        96 re~v~~~IWt~eq~~~i~~~~v~vg~RMTVVRL~dG~L~V~SPValT~E~~~~L~~LGg~VkyIVaPn~s~EH~lfl~~w  175 (357)
                      +.+...++|...--..    ..++...+++|+-.+|. +|++|.+++++.+++|+++| +|+|||+.+.  -|...++.|
T Consensus         2 ~~~~~p~l~~~~~~~~----~~~~~~n~~~v~~~~g~-vlIDp~~~~~~~~~~l~~~g-~i~~vi~TH~--DH~g~~~~~   73 (200)
T d2p97a1           2 KSLHRPDLYSWSTFNP----ARNIDFNGFAWIRPEGN-ILIDPVALSNHDWKHLESLG-GVVWIVLTNS--DHVRSAKEI   73 (200)
T ss_dssp             EECSSTTEEEEEEEET----TTTEEEEEEEECCTTCC-EEESCCCCCHHHHHHHHHTT-CCSEEECSSG--GGCTTHHHH
T ss_pred             CCCcCCCeEEEEeecC----CCccccEEEEEEECCee-EEEECCcChHHHHHHHHhcC-CccEEEecCc--cccchHHHH
Confidence            3445466886553211    23456688999987766 57799999999999999999 8999999985  899999999


Q ss_pred             HHhCCCCeEEeCCCCcCCCCCCCcceeccccccccCCCCCCCcccCCeeEEEccCCCCCCCCceEEEEEEcCCceEEEec
Q 018387          176 SRKFPRAQIWVAPRQWSWPLNLPLAFFGIFRAKTLIDEDLSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKPSRTLLVTD  255 (357)
Q Consensus       176 ~~~FP~Akv~~~pg~~s~p~~lpl~~~gi~~~~~L~~~~~~~pw~~efd~~~l~~~~~g~~~~~EvvffHKpSkTLIvtD  255 (357)
                      +++| +|++|+.+.....-...+        +..+.+   ......+++...+.     .|.....+++|.++++|+.+|
T Consensus        74 ~~~~-~a~i~~~~~~~~~~~~~p--------d~~~~~---~~~~~~~~~vi~~p-----GH~~~~~~~~~~~~~~Lf~GD  136 (200)
T d2p97a1          74 ADQT-YTKIAGPVAEKENFPIYC--------DRWLSD---GDELVPGLKVMELQ-----GSKTPGELALLLEETTLITGD  136 (200)
T ss_dssp             HHHS-CCEEEEEGGGTTSCSSCC--------SEEECT---TCBSSTTEEEEEEC-----SSSSTTEEEEEETTTEEEECS
T ss_pred             HHhc-CceEEeeccccccccccc--------eEeccc---ccccceeEEEEEeC-----CcCCCCEeEEecccceEEECC
Confidence            9999 999999886432100011        111211   12233567777773     343445567889999999999


Q ss_pred             ccccCCC
Q 018387          256 AVIFVPR  262 (357)
Q Consensus       256 ll~Nlp~  262 (357)
                      ++++.+.
T Consensus       137 ~l~~~~~  143 (200)
T d2p97a1         137 LVRAYRA  143 (200)
T ss_dssp             SEEBSST
T ss_pred             EeeccCC
Confidence            9998763
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure