Citrus Sinensis ID: 018388

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
Protein Sequence
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSVS
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHcHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHcHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHEEHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMmalcpgldecSLAIYLSGFQQAIIGLGTLVMMpvignlsdqygrkamltlpltlsiIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLkddvpndddddltrpiiteetegvnqnesnspvkipvckkipsIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIswsawvpyATTAFSVLVVFATPSVS
Flexible Loop (DISEMBL)
mgmekeikTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIiteetegvnqnesnspvkipvckKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSVS
Low Complexity Region (SEG)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMltlpltlsiiplailaYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKddvpndddddLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSVS
Disordered region (IsUnstruct)
*******KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDV****************************VKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFA*****
Disordered Region (DISOPRED)
******I****HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDD**************************IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSVS
Disordered Region (DISEMBL)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETE*********PVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSVS
Disordered Region (DISPRO)
*GMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVP***********************SNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSVS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	357	2.2.26 [Sep-21-2011]
Q96MC6	490	Hippocampus abundant tran	yes	no	0.854	0.622	0.232	2e-11
P70187	490	Hippocampus abundant tran	yes	no	0.854	0.622	0.232	2e-11
Q8CIA9	507	Hippocampus abundant tran	no	no	0.789	0.556	0.231	3e-09
Q5SR56	506	Hippocampus abundant tran	no	no	0.792	0.559	0.232	4e-09
A4IF94	502	Hippocampus abundant tran	no	no	0.792	0.563	0.235	2e-08
B2RYH9	507	Hippocampus abundant tran	no	no	0.792	0.558	0.228	1e-07
P02982	399	Tetracycline resistance p	yes	no	0.714	0.639	0.206	4e-05
P02980	401	Tetracycline resistance p	yes	no	0.450	0.401	0.240	5e-05
Q07282	405	Tetracycline resistance p	no	no	0.677	0.597	0.225	0.0001
P71678	518	MFS-type drug efflux tran	yes	no	0.238	0.164	0.360	0.0002

>sp|Q96MC6|HIAT1_HUMAN Hippocampus abundant transcript 1 protein OS=Homo sapiens GN=HIAT1 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 145/352 (41%), Gaps = 47/352 (13%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           +F+  F WG  T     A T V +    P          ++G  Q + GL + +  P+IG
Sbjct: 44  IFLEFFAWGLLT-----APTLVVLHETFP-----KHTFLMNGLIQGVKGLLSFLSAPLIG 93

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD +GRK+ L L +  +  P+ ++  + S  +++A  ++  + A+        +  AY
Sbjct: 94  ALSDVWGRKSFLLLTVFFTCAPIPLM--KISPWWYFAVISVSGVFAVTFS-----VVFAY 146

Query: 133 VADNISERQRASAFGILLGVLSASFVC----GTLAARFLSTTSAFQAATIVSMLAAAYMR 188
           VAD   E +R+ A+G++    +AS V     G    R    +     AT +++L   ++ 
Sbjct: 147 VADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFIL 206

Query: 189 VFLKDDVPND-DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI--PSIRDLICLLRSS 245
           V + + +P          PI  E+ +                KK+   SI  LIC     
Sbjct: 207 VAVPESLPEKMRPASWGAPISWEQAD-----------PFASLKKVGQDSIVLLIC----- 250

Query: 246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPL 305
                  +  F S L E G  +SF  +L+    F+    A  + + G+   I+Q + + L
Sbjct: 251 -------ITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSL 303

Query: 306 LAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSVS 357
           L   +G    + LGL    + +         W+ +A  A + +     P+VS
Sbjct: 304 LMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVS 355

Homo sapiens (taxid: 9606)

>sp|P70187|HIAT1_MOUSE Hippocampus abundant transcript 1 protein OS=Mus musculus GN=Hiat1 PE=2 SV=3

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 145/352 (41%), Gaps = 47/352 (13%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           +F+  F WG  T     A T V +    P          ++G  Q + GL + +  P+IG
Sbjct: 44  IFLEFFAWGLLT-----APTLVVLHETFP-----KHTFLMNGLIQGVKGLLSFLSAPLIG 93

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD +GRK+ L L +  +  P+ ++  + S  +++A  ++  + A+        +  AY
Sbjct: 94  ALSDVWGRKSFLLLTVFFTCAPIPLM--KISPWWYFAVISVSGVFAVTFS-----VVFAY 146

Query: 133 VADNISERQRASAFGILLGVLSASFVC----GTLAARFLSTTSAFQAATIVSMLAAAYMR 188
           VAD   E +R+ A+G++    +AS V     G    R    +     AT +++L   ++ 
Sbjct: 147 VADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFIL 206

Query: 189 VFLKDDVPND-DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI--PSIRDLICLLRSS 245
           V + + +P          PI  E+ +                KK+   SI  LIC     
Sbjct: 207 VAVPESLPEKMRPASWGAPISWEQAD-----------PFASLKKVGQDSIVLLIC----- 250

Query: 246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPL 305
                  +  F S L E G  +SF  +L+    F+    A  + + G+   I+Q + + L
Sbjct: 251 -------ITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSL 303

Query: 306 LAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSVS 357
           L   +G    + LGL    + +         W+ +A  A + +     P+VS
Sbjct: 304 LMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMWAAGAVAAMSSITFPAVS 355

Mus musculus (taxid: 10090)

>sp|Q8CIA9|HIAL1_MOUSE Hippocampus abundant transcript-like protein 1 OS=Mus musculus GN=Hiatl1 PE=2 SV=3

 Score = 63.2 bits (152), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 127/307 (41%), Gaps = 25/307 (8%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++         + Y+
Sbjct: 83  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRINP-----WWYF 137

Query: 112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
            + +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS  
Sbjct: 138 GMISVSGVF---SVTFSVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSAN 194

Query: 171 SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCK 230
                  +V+ L A     F+   VP    + + RP          Q +  + +K  V K
Sbjct: 195 YGDSLVVLVATLVALLDICFILIAVPESLSEKI-RPASWGAQISWKQADPFASLK-KVGK 252

Query: 231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI 290
              S   LIC            +  F S L E G  +SF  +L+    F   +    + +
Sbjct: 253 D--STVLLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAM 298

Query: 291 AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVV 350
            G+   ++Q +F+  L   LG    + LGL    + +        AW+ +A    + +  
Sbjct: 299 VGILSIVAQTVFLSKLMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSS 358

Query: 351 FATPSVS 357
              P+VS
Sbjct: 359 ITFPAVS 365

Mus musculus (taxid: 10090)

>sp|Q5SR56|HIAL1_HUMAN Hippocampus abundant transcript-like protein 1 OS=Homo sapiens GN=HIATL1 PE=2 SV=3

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 131/306 (42%), Gaps = 23/306 (7%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++A  
Sbjct: 81  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFAMI 138

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS 171
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS + 
Sbjct: 139 SVSGVFSVTF-----SVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASY 193

Query: 172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK 231
                 +V+ + A     F+   VP    + + RP+         Q +  + +K  V K 
Sbjct: 194 GDSLVVLVATVVALLDICFILVAVPESLPEKM-RPVSWGAQISWKQADPFASLK-KVGKD 251

Query: 232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA 291
             S   LIC            +  F S L E G  +SF  +L+    F   + A  + + 
Sbjct: 252 --STVLLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAMV 297

Query: 292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVF 351
           G+   ++Q  F+ +L   LG    + LGL    + +        AW+ +A    + +   
Sbjct: 298 GILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSI 357

Query: 352 ATPSVS 357
             P++S
Sbjct: 358 TFPAIS 363

Homo sapiens (taxid: 9606)

>sp|A4IF94|HIAL1_BOVIN Hippocampus abundant transcript-like protein 1 OS=Bos taurus GN=HIATL1 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 130/306 (42%), Gaps = 23/306 (7%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++A  
Sbjct: 78  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFAMI 135

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS 171
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS + 
Sbjct: 136 SISGVFSVTFS-----VIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASY 190

Query: 172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK 231
                 +V+ + A     F+   VP    + + RP+         Q +  + +K  V K 
Sbjct: 191 GDSLVVLVATVVALLDICFILLAVPESLPEKM-RPLSWGARISWKQADPFASLK-KVGKD 248

Query: 232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA 291
             S   LIC            +  F S L E G  +SF  +L+    F   + A  + + 
Sbjct: 249 --STILLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSIKIAAFIAMV 294

Query: 292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVF 351
           G+   ++Q +F+  L   LG    + LGL      +        AW+ +A    + +   
Sbjct: 295 GILSIVAQTVFLTSLMRSLGNKNTVLLGLGFQMFQLAWYGFGSQAWMMWAAGIVAAVSSI 354

Query: 352 ATPSVS 357
             P+VS
Sbjct: 355 TFPAVS 360

Bos taurus (taxid: 9913)

>sp|B2RYH9|HIAL1_RAT Hippocampus abundant transcript-like protein 1 OS=Rattus norvegicus GN=Hiatl1 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 128/306 (41%), Gaps = 23/306 (7%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++   
Sbjct: 83  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFGMI 140

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS 171
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS+  
Sbjct: 141 SVSGVFSVTF-----SVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSSNY 195

Query: 172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK 231
                 +V+ + A     F+   VP    + + RP          Q +  + +K  V K 
Sbjct: 196 GDSLVVLVATVVALLDICFILVAVPESLPEKI-RPASWGAQISWKQADPFASLK-KVGKD 253

Query: 232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA 291
             S   LIC            +  F S L E G  +SF  +L+    F   +    + + 
Sbjct: 254 --STVLLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAMV 299

Query: 292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVF 351
           G+   ++Q +F+  L   LG    + LGL    + +        AW+ +A    + +   
Sbjct: 300 GILSILAQTVFLSKLMRSLGNKNTVLLGLGFQILQLAWYGFGAQAWMMWAAGTVAAMSSI 359

Query: 352 ATPSVS 357
             P+VS
Sbjct: 360 TFPAVS 365

Rattus norvegicus (taxid: 10116)

>sp|P02982|TCR1_ECOLX Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 117/290 (40%), Gaps = 35/290 (12%)

Query: 69  PVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL 128
           PV+G LSD++GR+ +L + L  + +  AI+A   +  F +  Y  R +  +   G+   +
Sbjct: 61  PVLGALSDRFGRRPVLLVSLAGAAVDYAIMA---TAPFLWVLYIGRIVAGIT--GATGAV 115

Query: 129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMR 188
           A AY+AD     +RA  FG +        V G +    +   S        + L      
Sbjct: 116 AGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAAL------ 169

Query: 189 VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTL 248
                    +  + LT   +  E+          P++      + S R         +T+
Sbjct: 170 ---------NGLNFLTGCFLLPES----HKGERRPLRREALNPLASFR-----WARGMTV 211

Query: 249 SQAAVVAFFSGLSEGGMQAS-FLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLA 307
             A +  FF     G + A+ ++ F + +FH++       +   G+  +++Q +    +A
Sbjct: 212 VAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVA 271

Query: 308 PILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSVS 357
             LGE + L LG+ A      + + +   W+     AF ++V+ A+  + 
Sbjct: 272 ARLGERRALMLGMIADGTGYILLAFATRGWM-----AFPIMVLLASGGIG 316

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|P02980|TCR2_ECOLX Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 18/179 (10%)

Query: 58  AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLT 117
           A+  L  ++  P +G +SD++GR+ +L L L  + +   +LA+  ++   Y    L  +T
Sbjct: 48  ALYALMQVIFAPWLGKMSDRFGRRPVLLLSLIGASLDYLLLAFSSALWMLYLGRLLSGIT 107

Query: 118 AMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---LSTTSAFQ 174
                G+   +A + +AD  S  QR   FG L        + G +   F   +S  S F 
Sbjct: 108 -----GATGAVAASVIADTTSASQRVKWFGWLGASFGLGLIAGPIIGGFAGEISPHSPFF 162

Query: 175 AATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIP 233
            A +++++    +  + ++     D+ D         TE   + +SNS V I + K +P
Sbjct: 163 IAALLNIVTFLVVMFWFRETKNTRDNTD---------TEVGVETQSNS-VYITLFKTMP 211

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|Q07282|TCR5_ECOLX Tetracycline resistance protein, class E OS=Escherichia coli GN=tetA PE=3 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 122/280 (43%), Gaps = 38/280 (13%)

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           ++  P++G  SD+ GR+ +L L L  + +  A++A   + S  +  Y  R +  +   G+
Sbjct: 55  VIFAPLLGRWSDRIGRRPVLLLSLLGATLDYALMA---TASVVWVLYLGRLIAGI--TGA 109

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---LSTTSAFQAATIVSM 181
              +A + +AD   E  R   FG++        + G +   F   LS  + F  A  ++ 
Sbjct: 110 TGAVAASTIADVTPEESRTHWFGMMGACFGGGMIAGPVIGGFAGQLSVQAPFMFAAAING 169

Query: 182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL 241
           LA   + +F+  +  N +        +++E +    NE+ S           SIR++I  
Sbjct: 170 LAF-LVSLFILHETHNANQ-------VSDELKNETINETTS-----------SIREMISP 210

Query: 242 LRSSVTLSQAAVVAFFSGLSEGGMQAS-FLYFLKAQFHFNKNQFADLMLIAGLAGTISQL 300
           L          +V FF     G + A+ ++ F + +F ++       + + GL   + Q 
Sbjct: 211 L-------SGLLVVFFIIQLIGQIPATLWVLFGEERFAWDGVMVGVSLAVFGLTHALFQG 263

Query: 301 LFMPLLAPILGEAKLLSLGLFAACINMFICSI---SWSAW 337
           L    +A  LGE K +++G+ A    +F+ ++   SW  W
Sbjct: 264 LAAGFIAKHLGERKAIAVGILADGCGLFLLAVITQSWMVW 303

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|P71678|MFS55_MYCTU MFS-type drug efflux transporter P55 OS=Mycobacterium tuberculosis GN=Rv1410c PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 62  LGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVC 121
           LG +  MP++G  SD++GRK ML + L   II   + A       F+   A RT+   V 
Sbjct: 56  LGYIAAMPLLGRASDRFGRKLMLQVSLAGFIIGSVVTALAGHFGDFHMLIAGRTIQG-VA 114

Query: 122 EGSINCLALAYVADNISERQRASAFG 147
            G++  + LA  AD  S+R RA   G
Sbjct: 115 SGALLPITLALGADLWSQRNRAGVLG 140

Confers resistance to ethidium bromide. Requires lprG lipoprotein for normal function.

Mycobacterium tuberculosis (taxid: 1773)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
225428113	439	PREDICTED: hippocampus abundant transcri	0.932	0.758	0.689	1e-129
224105113	442	predicted protein [Populus trichocarpa]	0.977	0.789	0.647	1e-128
224083179	447	predicted protein [Populus trichocarpa]	0.971	0.776	0.611	1e-124
255539072	442	tetracycline transporter, putative [Rici	0.974	0.787	0.644	1e-123
356517952	432	PREDICTED: hippocampus abundant transcri	0.977	0.807	0.598	1e-120
118486381	450	unknown [Populus trichocarpa]	0.974	0.773	0.6	1e-119
356509042	432	PREDICTED: hippocampus abundant transcri	0.977	0.807	0.592	1e-119
225459764	442	PREDICTED: hippocampus abundant transcri	0.980	0.791	0.612	1e-119
356574133	443	PREDICTED: hippocampus abundant transcri	0.974	0.785	0.599	1e-118
357467111	454	Hippocampus abundant transcript-like pro	0.985	0.775	0.541	1e-115

>gi|225428113|ref|XP_002280708.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera] gi|297744560|emb|CBI37822.3| unnamed protein product [Vitis vinifera]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/338 (68%), Positives = 272/338 (80%), Gaps = 5/338 (1%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  L+HLFVTV L  F+  +V+PAITDVTM ALCPG DECSLAIYLSGFQQAIIGL
Sbjct: 1   MEK-LAGLTHLFVTVLLGSFSAFIVIPAITDVTMSALCPGKDECSLAIYLSGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GT+VM PVIGNLSD+YGRKA+LT+P+ LSIIPLAILAY R+ + FYAY+ +RTLTAMV E
Sbjct: 60  GTVVMTPVIGNLSDEYGRKALLTIPMALSIIPLAILAYSRTTTSFYAYFVIRTLTAMVGE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GSINCLALAYVADNISE QRASAFG+L GV SA+FVCGTLAARFLST S FQ AT+VSM+
Sbjct: 120 GSINCLALAYVADNISEGQRASAFGVLSGVASAAFVCGTLAARFLSTASTFQVATLVSMI 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           A  YMRVFLK+  P  D        + ++  G++ ++ NS  KI   KKIPS+ DLI LL
Sbjct: 180 ATVYMRVFLKETFPKGDSSQ----ALLKKEPGMSPDDGNSSEKIQTFKKIPSVGDLISLL 235

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           +     SQAAVV FF+GL+EGG+QAS LYFLKA+FHFNKNQFAD+MLI G+ GTISQLLF
Sbjct: 236 KCRAAFSQAAVVVFFNGLAEGGLQASLLYFLKARFHFNKNQFADIMLIVGVMGTISQLLF 295

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPY 340
           MPLLAP + E KLLS+GLF  C N+F+ SI+WS WVPY
Sbjct: 296 MPLLAPRVSEEKLLSIGLFMGCTNIFLNSIAWSFWVPY 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105113|ref|XP_002313691.1| predicted protein [Populus trichocarpa] gi|222850099|gb|EEE87646.1| predicted protein [Populus trichocarpa]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 228/352 (64%), Positives = 282/352 (80%), Gaps = 3/352 (0%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK    L HLFVTVFL  F ++MV+PA+TDVTM+A+CPG DECSLAIYL+GFQQA IG+
Sbjct: 1   MEK-FTELIHLFVTVFLSTFGSLMVLPAVTDVTMVAVCPGQDECSLAIYLTGFQQASIGM 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GT+VM+P+IGNLSDQYGRKA+LTLP+TLSIIPL ILAY R+  FFYAYYALRTLTAM+CE
Sbjct: 60  GTVVMLPLIGNLSDQYGRKALLTLPMTLSIIPLVILAYSRTTGFFYAYYALRTLTAMICE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GSI+CLALAYVADN+ ERQR S FGIL G+ +A+ VCGTLAARFLST   FQ A ++SML
Sbjct: 120 GSIDCLALAYVADNVLERQRTSVFGILSGITTAALVCGTLAARFLSTALTFQVAALLSML 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           AA YMR+FL++ +P    ++LT+PI+    +   Q++ + P K  V KKIPSI+ +I LL
Sbjct: 180 AAVYMRIFLEESLPQ--SENLTQPILKSGQDDHCQDDGDLPRKPMVSKKIPSIQAIISLL 237

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           +SSVT SQAA+VAFF  LS GG+QAS +Y+LKA+FHF+KNQ+ADLML+ G++G  SQLLF
Sbjct: 238 KSSVTFSQAAIVAFFHSLSYGGLQASIMYYLKARFHFSKNQYADLMLLVGVSGMASQLLF 297

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATP 354
           MPLLAP++ E KLL++GL     N  + S++ SAWVPYATT FSV  VF  P
Sbjct: 298 MPLLAPLVAEEKLLAIGLLGGIANALLYSVACSAWVPYATTIFSVFAVFIPP 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083179|ref|XP_002306959.1| predicted protein [Populus trichocarpa] gi|222856408|gb|EEE93955.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/355 (61%), Positives = 281/355 (79%), Gaps = 8/355 (2%)

Query: 5   KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGT 64
           K +  LSHLF+T+FL  F+ +MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGLGT
Sbjct: 2   KTLSGLSHLFITIFLHNFSAVMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGLGT 61

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           LVMMP+IGN+SD+YGRKA+LT+PL+L I+P AILAY R+ +FFYAYY ++TL AMVCEGS
Sbjct: 62  LVMMPLIGNMSDKYGRKALLTVPLSLVIVPSAILAYSRTRNFFYAYYVVKTLIAMVCEGS 121

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAA 184
           + CLALAYVADN+ E +RASAFGIL G+ S++FVCG L+ RFLST S FQ +  V++ + 
Sbjct: 122 VPCLALAYVADNVPEGRRASAFGILSGIASSAFVCGNLSTRFLSTASTFQVSASVAIASL 181

Query: 185 AYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIP-----VCKKIPSIRDLI 239
            YMR FL+D +    D+ LT PI+T   +   + +  +  +IP     + K  PS+ D++
Sbjct: 182 VYMRFFLQDSI---IDEQLTAPILTSNGKPKGKGKDYATNEIPSKNVQIFKSAPSLEDML 238

Query: 240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQ 299
           CLL+SSVTLSQAAVVAFF  L+E G+ AS LY+LKA+FHFNK+QFADLM+I G+AGT+SQ
Sbjct: 239 CLLKSSVTLSQAAVVAFFYSLAEVGLHASLLYYLKARFHFNKDQFADLMVITGIAGTLSQ 298

Query: 300 LLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATP 354
           L+ MP+LAP LGEA+LL++GLF  C+++F+ SI+W+ WVPY    FSVL+VF+ P
Sbjct: 299 LVLMPILAPALGEARLLAVGLFFTCVHVFLYSIAWTFWVPYVAAMFSVLIVFSQP 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539072|ref|XP_002510601.1| tetracycline transporter, putative [Ricinus communis] gi|223551302|gb|EEF52788.1| tetracycline transporter, putative [Ricinus communis]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/352 (64%), Positives = 284/352 (80%), Gaps = 4/352 (1%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  LSHLF+T+FL  F+T MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGL
Sbjct: 1   MEK-LSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLVMMP++GNLSD+YGRKA+LT+P++L++IPLA LAY R+  FFYAYY ++TLTAMVCE
Sbjct: 60  GTLVMMPLVGNLSDKYGRKALLTIPMSLTVIPLATLAYSRTTYFFYAYYVMKTLTAMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS++CLALAYVADN+ E +RASAFGIL G+ S++FVCGTL+ RFLST S FQ +  ++++
Sbjct: 120 GSVHCLALAYVADNVPEARRASAFGILSGIGSSAFVCGTLSTRFLSTASTFQVSASMAVV 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           A  YM+VFL+D +    D +LT PII+     V     NS     V + +PS+ D+ICLL
Sbjct: 180 AIVYMKVFLQDSIV---DKNLTTPIISNGKGKVYVQIENSSENEQVFRTMPSLEDMICLL 236

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           +SSVT +QAA+VAFF  LSE G+ AS +Y+LKA+FHFNKNQFADLM+I+G+AGTISQLL 
Sbjct: 237 KSSVTFTQAAIVAFFINLSEVGLHASLMYYLKARFHFNKNQFADLMVISGIAGTISQLLL 296

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATP 354
           MPLLAP LGEA+LLS+GLF  CI+MF+ SI+WS WVPYA    S+L VF+ P
Sbjct: 297 MPLLAPALGEARLLSVGLFFTCIHMFLYSIAWSFWVPYAAALLSILFVFSQP 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517952|ref|XP_003527649.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/351 (59%), Positives = 274/351 (78%), Gaps = 2/351 (0%)

Query: 6   EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTL 65
           ++  LSHLF+ VFL  F+  MVVPAITDVTM ALCPG DECSLAIY++GFQQA+IGLGTL
Sbjct: 3   KLYGLSHLFMAVFLHNFSMFMVVPAITDVTMAALCPGQDECSLAIYITGFQQAMIGLGTL 62

Query: 66  VMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI 125
           VMMP++GNLSD+YGRKA+LT+P+ L+IIP+ ILAY R+  FFY YY  + L +M+CEGS+
Sbjct: 63  VMMPLLGNLSDKYGRKAILTVPMILTIIPVGILAYSRTKKFFYVYYVFKILISMICEGSV 122

Query: 126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAA 185
            CL LAYVADNI E  R++AFGIL G+ SA+FVCGTL+ARFLST   FQ +T+++++ A 
Sbjct: 123 PCLGLAYVADNIPESGRSTAFGILSGIASAAFVCGTLSARFLSTALTFQVSTLIAVIGAL 182

Query: 186 YMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS 245
           YM+ FL+D     DD  L  PII++E   +++       K  + K + SI DL   L SS
Sbjct: 183 YMQFFLRDSA--IDDKHLYTPIISQENPIISKVNGKLESKKHLFKALRSIEDLTSFLNSS 240

Query: 246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPL 305
           +T++QAA+VAFF+ L++ G+  S LYFLKAQFHF+KNQFADLM+I+G+AGT+SQLL MP+
Sbjct: 241 LTITQAAIVAFFNSLADVGLHGSLLYFLKAQFHFDKNQFADLMVISGIAGTVSQLLLMPI 300

Query: 306 LAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSV 356
           LAPILGEA+LLS+GLF  CI+MF+ SI+WS+ VPYA+  FS+L VF+ P +
Sbjct: 301 LAPILGEARLLSVGLFFHCIHMFLYSIAWSSLVPYASAMFSILFVFSHPCI 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486381|gb|ABK95031.1| unknown [Populus trichocarpa]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/360 (60%), Positives = 281/360 (78%), Gaps = 12/360 (3%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  LSHLF+T+FL  F+T MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGL
Sbjct: 1   MEK-LSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLV MP+IGN+SD+YGRKA+LT+P++L I+P AILAY R+ +FFYAYY +RTL AMVCE
Sbjct: 60  GTLVTMPLIGNMSDKYGRKALLTVPMSLIIVPSAILAYSRTRNFFYAYYVVRTLMAMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS+ CLALAYVADN+ E +RAS FGIL G+ S++FVCG L+ RFLST+S FQ + +V++ 
Sbjct: 120 GSVQCLALAYVADNVPESRRASTFGILSGIASSAFVCGNLSTRFLSTSSTFQVSALVAIA 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQN-------ESNSPVK-IPVCKKIPS 234
           A  YMR FL++ +    D+ L+ PI+T +  G  +            P K + V K  PS
Sbjct: 180 ALVYMRFFLQESI---IDEQLSTPILTYKGNGKGKGKANAACFAHEIPSKNVQVFKSAPS 236

Query: 235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLA 294
           + D++CLL+SSVTLSQAAVVAFF  L+E G+ AS +Y+LKAQFHF+K+QFA LM+I+G+A
Sbjct: 237 LEDMLCLLKSSVTLSQAAVVAFFYSLAEVGLHASLMYYLKAQFHFSKDQFAVLMVISGIA 296

Query: 295 GTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATP 354
           GT+SQL+ MPLL P LGEA+LL++GLF  C+++F+ SI+W+ WVPY  + FS+L VF+ P
Sbjct: 297 GTVSQLVIMPLLTPALGEARLLAVGLFFTCVHVFLYSIAWTFWVPYVASMFSLLFVFSQP 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509042|ref|XP_003523261.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/351 (59%), Positives = 275/351 (78%), Gaps = 2/351 (0%)

Query: 6   EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTL 65
           ++  LSHLF+TVFL  F+  MVVPAITDVTM ALCPG DECSLAIY++GFQQA+IGLGTL
Sbjct: 3   KLYGLSHLFMTVFLHNFSMFMVVPAITDVTMAALCPGQDECSLAIYITGFQQAMIGLGTL 62

Query: 66  VMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI 125
           VMMP++GNLSD+YGRKA+LTLP+ L+IIP+ ILAY R+  FFY YY  + L +MVCEGS+
Sbjct: 63  VMMPLLGNLSDKYGRKAILTLPMILTIIPVGILAYSRTKKFFYVYYVFKILISMVCEGSV 122

Query: 126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAA 185
            CLALAYVADN+ E  R++ FGIL G+ SA+FVC TL+ARFLS+   FQ +T+++++ A 
Sbjct: 123 PCLALAYVADNVPESGRSTVFGILSGIGSAAFVCATLSARFLSSALTFQVSTLIAVIGAL 182

Query: 186 YMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS 245
           YM+ FL+D V   DD  L  PII++    +++   N   K  + K + SI+DL   L SS
Sbjct: 183 YMQFFLRDSV--IDDKHLYTPIISQGNPIISKVNGNLESKKHLLKALRSIKDLTSFLNSS 240

Query: 246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPL 305
           +T++QAA+VAFF+ L++ G+  S LYFLKAQFHF+KNQFADLM+I+G+AGT+SQLL MP+
Sbjct: 241 LTINQAAIVAFFNSLADVGLHGSLLYFLKAQFHFDKNQFADLMVISGIAGTVSQLLLMPI 300

Query: 306 LAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSV 356
           LAPILGE +LLS+GLF  C++MF+ S++WS+ VPYA+  FS+L VF+ P +
Sbjct: 301 LAPILGETRLLSVGLFFHCVHMFLYSMAWSSLVPYASAMFSILYVFSHPCI 351

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459764|ref|XP_002284761.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera] gi|302141709|emb|CBI18912.3| unnamed protein product [Vitis vinifera]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/354 (61%), Positives = 278/354 (78%), Gaps = 4/354 (1%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  L HLF+TVFL+ FAT MV+PAITDVTM ALCPG DECS+AIYL+GFQQ IIGL
Sbjct: 1   MEK-LSGLRHLFMTVFLFNFATFMVIPAITDVTMAALCPGRDECSIAIYLTGFQQVIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLVMMP++GNLSD YGRKA+LT+P+ L+IIPLAILA+ RS +FFYAY+ L+TLT+MVCE
Sbjct: 60  GTLVMMPLVGNLSDMYGRKALLTIPMCLTIIPLAILAWSRSRNFFYAYFVLKTLTSMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS++CL LAYVADNI E +RASAFG+L GV S++FVCGTL+ARFL T+S FQ A  V+ +
Sbjct: 120 GSVHCLTLAYVADNIPEIRRASAFGVLSGVGSSAFVCGTLSARFLKTSSTFQVAASVAAV 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           AA YM++FL D V  D   D     I E+   V   +  S    PV K +PS+ D++ LL
Sbjct: 180 AAVYMKLFLPDSVIKDGVLDRA---ILEQKPCVIHLDGESAQDSPVFKSMPSLDDMLSLL 236

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           ++S T ++AA+VAFFS L + G+  S +Y+LKA+FHFNK+QFADLM+I+G+AGTISQL+ 
Sbjct: 237 QTSSTFTKAAIVAFFSNLGDVGLHTSLMYYLKARFHFNKHQFADLMMISGIAGTISQLVL 296

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSV 356
           MP+LAP +GE KLL++GL  +C +MF+ SI+WS WVPYA   FS+L+VFA P +
Sbjct: 297 MPILAPTIGEEKLLAIGLLFSCSHMFLYSIAWSFWVPYAAAMFSILIVFAPPCI 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574133|ref|XP_003555206.1| PREDICTED: hippocampus abundant transcript 1 protein-like [Glycine max]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/352 (59%), Positives = 270/352 (76%), Gaps = 4/352 (1%)

Query: 5   KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGT 64
           + +  L HLFVT+F+ GF  ++V+PAITDVTM ALCPG D+CSLAIYLSGFQQA+ G+G+
Sbjct: 2   EGLGGLGHLFVTMFVSGFGGVIVLPAITDVTMAALCPGQDQCSLAIYLSGFQQAMAGVGS 61

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           +VM P+IGNLSD+YGRKA+LTLPLT+S+IP  ILAY R   FFYAYY ++TL AM  EGS
Sbjct: 62  VVMTPLIGNLSDRYGRKALLTLPLTVSVIPQVILAYSRDTQFFYAYYVVKTLAAMAGEGS 121

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAA 184
            +CLALAYVAD + + +R SAFGIL GV SASFV GTLAARFLST   FQ A+++SM+A 
Sbjct: 122 FHCLALAYVADKVPDGKRTSAFGILAGVGSASFVGGTLAARFLSTALTFQVASVLSMVAL 181

Query: 185 AYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS 244
            YMR+FLKD VP      L +P++ E  E  ++++S SP      KK+PS+ DLICLLR 
Sbjct: 182 VYMRIFLKDSVPG---GALRQPLLKEVEEPCDEDDS-SPRATGTFKKLPSLGDLICLLRC 237

Query: 245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP 304
           S T SQAA+V+FF+ L++GG+ A  LY+LKA+F FNKNQFADL++I G+  T++QL FMP
Sbjct: 238 SPTFSQAAMVSFFNSLADGGLMAVLLYYLKARFQFNKNQFADLLMITGIGATLAQLFFMP 297

Query: 305 LLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSV 356
           +L P++GE KLLS GL  +CIN+F+ SI+W+AWVPYA    SV  VF  PS+
Sbjct: 298 ILVPVIGEEKLLSTGLLISCINVFVYSIAWTAWVPYALAGCSVFAVFVRPSL 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467111|ref|XP_003603840.1| Hippocampus abundant transcript-like protein [Medicago truncatula] gi|355492888|gb|AES74091.1| Hippocampus abundant transcript-like protein [Medicago truncatula]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/375 (54%), Positives = 273/375 (72%), Gaps = 23/375 (6%)

Query: 3   MEK-EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAI-- 59
           MEK  +  LSHLF+TVFL   +T MV PAITDVTM ALCPG DECS+AIYL+GFQQA+  
Sbjct: 1   MEKLNMYGLSHLFMTVFLHNLSTFMVQPAITDVTMAALCPGQDECSIAIYLTGFQQAVRY 60

Query: 60  ------------------IGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR 101
                             IG+GTLVMMP++G+LSD+YGRKA+LTLP+TL IIPL ILAY 
Sbjct: 61  IVSPIYLNILHSFSKLTMIGMGTLVMMPILGDLSDKYGRKAILTLPMTLMIIPLGILAYS 120

Query: 102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT 161
           R+ +FFY YY  + +  M+C+G + CLALAYVADN+ E +R+SAFG+L G+ S++FVCGT
Sbjct: 121 RTKTFFYVYYVFKIIINMICDGCVPCLALAYVADNVPEGRRSSAFGVLSGIGSSAFVCGT 180

Query: 162 LAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESN 221
           +AARFLS    FQ +T V++L A YM++FL+D V   D++ L  PII++    + +    
Sbjct: 181 VAARFLSAAQTFQVSTFVAVLGAVYMQIFLRDSV--ADENQLYTPIISQGKPPIAKINGK 238

Query: 222 SPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNK 281
           S   +P+ K + S+RD+   L SS  ++QA++VAFFS L++ G+  S +Y+LKA+FHF+K
Sbjct: 239 SKANMPLLKALSSLRDITSFLNSSKIITQASIVAFFSNLADVGLHGSMMYYLKARFHFDK 298

Query: 282 NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA 341
           N FADLM+I+G+AGT+SQL  MP+ AP LGEA+LLS+GLF  C++MFI SI+WS+WVPYA
Sbjct: 299 NHFADLMIISGIAGTVSQLFLMPIFAPTLGEARLLSIGLFFHCVHMFIYSIAWSSWVPYA 358

Query: 342 TTAFSVLVVFATPSV 356
              FS+L VF+ P +
Sbjct: 359 AAMFSILFVFSQPCI 373

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	357
TAIR|locus:2039450	456	AT2G16990 "AT2G16990" [Arabido	0.991	0.776	0.479	6e-80
TAIR|locus:2039440	461	AT2G16980 [Arabidopsis thalian	0.971	0.752	0.451	1.2e-72
TAIR|locus:2039430	446	MEE15 "maternal effect embryo	0.941	0.753	0.415	7.4e-66
TAIR|locus:2157592	282	AT5G42210 "AT5G42210" [Arabido	0.476	0.602	0.439	1.3e-34
UNIPROTKB|Q5SR56	506	HIATL1 "Hippocampus abundant t	0.789	0.557	0.221	1.1e-10
UNIPROTKB|A4IF94	502	HIATL1 "Hippocampus abundant t	0.789	0.561	0.224	5.1e-10
UNIPROTKB|F1PLI9	506	LOC476363 "Uncharacterized pro	0.882	0.622	0.221	1.3e-08
MGI|MGI:1913881	507	Hiatl1 "hippocampus abundant t	0.591	0.416	0.220	3.1e-07
UNIPROTKB|B4DUE6	311	HIATL1 "Hippocampus abundant t	0.733	0.842	0.226	5.5e-07
TIGR_CMR|BA_0835	400	BA_0835 "multidrug resistance	0.310	0.277	0.243	1e-06

TAIR|locus:2039450 AT2G16990 "AT2G16990" [Arabidopsis thaliana (taxid:3702)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 174/363 (47%), Positives = 223/363 (61%)

Query:     3 MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIG 61
             ME  I  L H+  TVFL  FA  MVVP ITDVT+ A+C G D+ CSLA+YL+GFQQ  IG
Sbjct:     1 MEDGIGGLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQVAIG 60

Query:    62 LGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVC 121
             +GT++MMPVIGNLSD+YG K +                YRR I FFY +Y  + LT+MVC
Sbjct:    61 MGTMIMMPVIGNLSDRYGIKTILTLPMCLSIVPPVILGYRRDIKFFYVFYISKILTSMVC 120

Query:   122 EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSM 181
             EG+++CLA AYVA NI    R SAFGIL G+ + + + GTL ARFL     FQ + I   
Sbjct:   121 EGTVDCLAYAYVAVNIHGSTRISAFGILAGIKTIAGLFGTLVARFLPIALTFQVSAISFF 180

Query:   182 LAAAYMRVFLKXXXXXXXXXXLTRPIITEET-EGVNQNE------SNSPVKIPVC-KKIP 233
             +   YMRVFLK          L      +E  + +N         ++ P+K  V  KK  
Sbjct:   181 VGLVYMRVFLKEKLNDDEDDDLHHGTYHQEDHDSINTTMLAEPILNDRPIKTQVFHKKYS 240

Query:   234 SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGL 293
             S++D+I L+++S    QA VV FFS  S+ GM+++FLYFLKA+F F+K QFADL+L+  +
Sbjct:   241 SLKDMISLMKTSTIFFQALVVTFFSSFSDSGMESAFLYFLKARFGFDKKQFADLLLLITI 300

Query:   294 AGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFAT 353
              G+ISQL  +P  A  +GE KLLS GLF   INM I SISW+ WVPY TT F    +F  
Sbjct:   301 VGSISQLFVLPRFASAIGECKLLSTGLFMEFINMAIVSISWAPWVPYLTTVFVPGALFVM 360

Query:   354 PSV 356
             PSV
Sbjct:   361 PSV 363

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2039440 AT2G16980 [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 162/359 (45%), Positives = 211/359 (58%)

Query:    10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIGLGTLVMM 68
             L HL VTVFL G A  ++ P +TDVT+ A+C GLD+ CSLA+YL+G QQ  +G+GT+VMM
Sbjct:     9 LRHLLVTVFLSGLAEYLIRPVMTDVTVAAVCSGLDDSCSLAVYLTGVQQVTVGMGTMVMM 68

Query:    69 PVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVCEGSINCL 128
             PVIGNLSD+YG KAM                YRR  +FFYA+Y ++TL  MVC+G+I+CL
Sbjct:    69 PVIGNLSDRYGIKAMLTLPMCLSVLPPAILGYRRDTNFFYAFYVIKTLFDMVCQGTIDCL 128

Query:   129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMR 188
             A AYVA N+   +R S FGIL GV S S VC +L+ARFLS  S FQ A I   +   YMR
Sbjct:   129 ANAYVAKNVHGTKRISMFGILAGVSSISGVCASLSARFLSIASTFQVAAISLFIGLVYMR 188

Query:   189 VFLKXXXXXXXXXXLTRPIITEETEGVNQNES----------NSPVKIPVCK-KIPSIRD 237
             VFLK                    + V+              ++P K  V   K  S +D
Sbjct:   189 VFLKERLQDADDDDEADSGGCRSHQEVHNGGDLKMLTEPILRDAPTKTHVFNSKYSSWKD 248

Query:   238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTI 297
             ++ L+ +S  L QA VV FF+  SE G  ++ +YFLKA+F FNKN FA+L L+  + G+I
Sbjct:   249 MVSLINNSTILIQALVVTFFATFSESGRGSALMYFLKARFGFNKNDFAELFLLVTIIGSI 308

Query:   298 SQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSV 356
             SQL  +P L+  +GE K+LS GL     N    S++WS WVPYA T      +F  PSV
Sbjct:   309 SQLFILPTLSSTIGERKVLSTGLLMEFFNATCLSVAWSPWVPYAMTMLVPGAMFVMPSV 367

GO:0005215 "transporter activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IEA

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2039430 MEE15 "maternal effect embryo arrest 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 153/368 (41%), Positives = 206/368 (55%)

Query:     4 EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIGL 62
             E  +  L HL  TVFL GF+  +V P +TDVT+ A+C GL+E CSLA+YL+G +Q  +GL
Sbjct:     3 EYRLGELRHLLTTVFLSGFSEFLVKPVMTDVTVAAVCSGLNETCSLAVYLTGVEQVTVGL 62

Query:    63 GTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVCE 122
             GT+VMMPVIGNLSD+YG K +                YRR  +FFYA+Y  + L  M   
Sbjct:    63 GTMVMMPVIGNLSDRYGIKTLLTLPMCLSILPPAILAYRRDTNFFYAFYITKILFDM--- 119

Query:   123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
                        A N+  R+R S FG+L GV S S VC T +AR L   S FQ A I    
Sbjct:   120 -----------AKNVCGRKRISMFGVLAGVRSISGVCATFSARLLPIASIFQVAAISFFF 168

Query:   183 AAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNES------------NSPVKIPVC- 229
                YMRVFLK                 + T G N ++             ++P KI +  
Sbjct:   169 GLVYMRVFLKERLHDDDEDDCDED---DNTSGRNHHDGGDLTMLAEPILRDAPTKIHIVL 225

Query:   230 -KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLM 288
               K  S++D++ L+++S  L Q  VV FF+  ++ GMQ++FLYFLKA+F FNKN FA+L+
Sbjct:   226 NTKYSSLKDMVSLIKNSTILVQTLVVTFFATFAQSGMQSAFLYFLKARFGFNKNDFAELI 285

Query:   289 LIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVL 348
             L+  + G+ISQL  +P L   +GE ++LS GL    +N    S+SWSAWVPYATT    +
Sbjct:   286 LLVTIIGSISQLFILPKLVSAIGERRVLSTGLLMDSVNAACLSVSWSAWVPYATTVLVPV 345

Query:   349 VVFATPSV 356
              +F  PSV
Sbjct:   346 TMFVMPSV 353

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2157592 AT5G42210 "AT5G42210" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 76/173 (43%), Positives = 110/173 (63%)

Query:   179 VSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL 238
             + +L+  YMR+FL           L  PI+  E       E     +  + + I  + ++
Sbjct:    23 MGILSTLYMRLFLPDSIRDNS---LGAPIVINEKLSSPLLEDCPGHRNRIFRAIRLVHEM 79

Query:   239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTIS 298
               L+RSSV L Q A+V+FFS L+E G+ AS +Y+LKA+FHFNK+QFADLM+I G +G+IS
Sbjct:    80 ASLMRSSVPLFQVAMVSFFSSLAEAGLHASSMYYLKAKFHFNKDQFADLMIIVGASGSIS 139

Query:   299 QLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVF 351
             QLLFMP+L P L E +LLS+GLF  C +MF+  ++WS+WVPY    F++  +F
Sbjct:   140 QLLFMPVLVPALKEERLLSIGLFFGCAHMFLLCVAWSSWVPYMAAIFALFSIF 192

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q5SR56 HIATL1 "Hippocampus abundant transcript-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
 Identities = 68/307 (22%), Positives = 124/307 (40%)

Query:    52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYY 111
             ++G  Q + GL + +  P+IG LSD +GRK                      IS ++ Y+
Sbjct:    81 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMR----ISPWW-YF 135

Query:   112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
             A+ +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS +
Sbjct:   136 AMISVSGVF---SVTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSAS 192

Query:   171 SAFQAATIVSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCK 230
                    +V+ + A     F+           + RP+         Q +  + +K  V K
Sbjct:   193 YGDSLVVLVATVVALLDICFILVAVPESLPEKM-RPVSWGAQISWKQADPFASLK-KVGK 250

Query:   231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI 290
                 +  LIC            +  F S L E G  +SF  +L+    F   + A  + +
Sbjct:   251 DSTVL--LIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAM 296

Query:   291 AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVV 350
              G+   ++Q  F+ +L   LG    + LGL    + +        AW+ +A    + +  
Sbjct:   297 VGILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSS 356

Query:   351 FATPSVS 357
                P++S
Sbjct:   357 ITFPAIS 363

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A4IF94 HIATL1 "Hippocampus abundant transcript-like protein 1" [Bos taurus (taxid:9913)]

 Score = 149 (57.5 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
 Identities = 69/307 (22%), Positives = 123/307 (40%)

Query:    52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYY 111
             ++G  Q + GL + +  P+IG LSD +GRK                      IS ++ Y+
Sbjct:    78 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMR----ISPWW-YF 132

Query:   112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
             A+ +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS +
Sbjct:   133 AMISISGVF---SVTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSAS 189

Query:   171 SAFQAATIVSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCK 230
                    +V+ + A     F+           + RP+         Q +  + +K  V K
Sbjct:   190 YGDSLVVLVATVVALLDICFILLAVPESLPEKM-RPLSWGARISWKQADPFASLK-KVGK 247

Query:   231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI 290
                 +  LIC            +  F S L E G  +SF  +L+    F   + A  + +
Sbjct:   248 DSTIL--LIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSIKIAAFIAM 293

Query:   291 AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVV 350
              G+   ++Q +F+  L   LG    + LGL      +        AW+ +A    + +  
Sbjct:   294 VGILSIVAQTVFLTSLMRSLGNKNTVLLGLGFQMFQLAWYGFGSQAWMMWAAGIVAAVSS 353

Query:   351 FATPSVS 357
                P+VS
Sbjct:   354 ITFPAVS 360

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1PLI9 LOC476363 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 158 (60.7 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 77/348 (22%), Positives = 138/348 (39%)

Query:    12 HLFVTVFLWGFAT-MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPV 70
             H  + +FL  FA  ++  P +T   +    P          ++G  Q + GL + +  P+
Sbjct:    47 HAAIVIFLEFFAWGLLTTPMLT--VLHETFP-----QHTFLMNGLIQGVKGLLSFLSAPL 99

Query:    71 IGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVCEGSIN-CLA 129
             IG LSD +GRK                      IS ++ Y+A+ +++ +    S+   + 
Sbjct:   100 IGALSDVWGRKPFLLGTVFFTCFPIPLMR----ISPWW-YFAMISVSGVF---SVTFSVI 151

Query:   130 LAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRV 189
              AYVAD   E +R++A+G +    +AS V       +LS +       +V+ + A     
Sbjct:   152 FAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASYGDSLVVLVATVVALLDIC 211

Query:   190 FLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS 249
             F+           + RP+         Q +  + +K  V K    +  LIC         
Sbjct:   212 FILLAVPESLSEKM-RPLSWGAKISWKQADPFASLK-KVGKDSTVL--LIC--------- 258

Query:   250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI 309
                +  F S L E G  +SF  +L+    F   + A  + + G+   ++Q +F+ +L   
Sbjct:   259 ---ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAMVGILSIVAQTVFLTILMRS 315

Query:   310 LGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSVS 357
             LG    + LGL      +        AW+ +A    + +     P+VS
Sbjct:   316 LGNKNTVLLGLGFQIFQLAWYGFGSQAWMMWAAGTVAAMSSITFPAVS 363

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

MGI|MGI:1913881 Hiatl1 "hippocampus abundant transcript-like 1" [Mus musculus (taxid:10090)]

 Score = 122 (48.0 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 50/227 (22%), Positives = 90/227 (39%)

Query:   131 AYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVF 190
             AYVAD   E +R++A+G +    +AS V       +LS         +V+ L A     F
Sbjct:   155 AYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSANYGDSLVVLVATLVALLDICF 214

Query:   191 LKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ 250
             +           + RP        ++  +++    +   KK+   +D      S+V L  
Sbjct:   215 ILIAVPESLSEKI-RP--ASWGAQISWKQADPFASL---KKVG--KD------STVLL-- 258

Query:   251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL 310
               +  F S L E G  +SF  +L+    F   +    + + G+   ++Q +F+  L   L
Sbjct:   259 ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAMVGILSIVAQTVFLSKLMRSL 318

Query:   311 GEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSVS 357
             G    + LGL    + +        AW+ +A    + +     P+VS
Sbjct:   319 GNKNTVLLGLGFQMLQLAWYGFGSQAWMMWAAGTVAAMSSITFPAVS 365

GO:0005215 "transporter activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|B4DUE6 HIATL1 "Hippocampus abundant transcript-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 65/287 (22%), Positives = 115/287 (40%)

Query:    52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYY 111
             ++G  Q + GL + +  P+IG LSD +GRK                      IS ++ Y+
Sbjct:    16 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMR----ISPWW-YF 70

Query:   112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
             A+ +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS +
Sbjct:    71 AMISVSGVF---SVTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSAS 127

Query:   171 SAFQAATIVSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCK 230
                    +V+ + A     F+           + RP+         Q +  + +K  V K
Sbjct:   128 YGDSLVVLVATVVALLDICFILVAVPESLPEKM-RPVSWGAQISWKQADPFASLK-KVGK 185

Query:   231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI 290
                 +  LIC            +  F S L E G  +SF  +L+    F   + A  + +
Sbjct:   186 DSTVL--LIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAM 231

Query:   291 AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAW 337
              G+   ++Q  F+ +L   LG    + LGL    + +        AW
Sbjct:   232 VGILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAW 278

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TIGR_CMR|BA_0835 BA_0835 "multidrug resistance protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 93 (37.8 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 28/115 (24%), Positives = 43/115 (37%)

Query:    54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYAL 113
             G+  A+  +  L+  P+ G   D YGRK M                    +   Y    L
Sbjct:    48 GYLVAVFAMAQLIASPITGRWVDLYGRKKMIIIGLFIFGVSELLFGLGTDVWMLYVARVL 107

Query:   114 RTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS 168
               ++A      +     AYVAD  S ++R  A G L   +S  F+ G     F++
Sbjct:   108 GGISAAFIMPGVT----AYVADITSIQERPKAMGYLSAAISTGFIIGPGIGGFIA 158

GO:0006855 "drug transmembrane transport" evidence=ISS

GO:0042493 "response to drug" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036173001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (439 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00033966001	SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (470 aa)			•						0.483
	GSVIVG00023334001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (476 aa)			•						0.473
	GSVIVG00033971001	SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (488 aa)			•						0.459

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	357
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-06
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	4e-04

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 71/344 (20%), Positives = 119/344 (34%), Gaps = 41/344 (11%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           LF+  FL G    ++ PA+       L     E  L +           LG  +  P+ G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLL-------TAFSLGYALAQPLAG 53

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD++GR+ +L + L L  + L +L +  S+        L      +  G++   A A 
Sbjct: 54  RLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL----QGLGGGALFPAAAAL 109

Query: 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFLST----TSAFQAATIVSMLAAAYMR 188
           +AD     +R  A G+L          G L    L++     +AF    I+++LAA    
Sbjct: 110 IADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAA 169

Query: 189 VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTL 248
           + L    P              E++     E      +P  K +     L  LL      
Sbjct: 170 LLLPRPPP--------------ESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLL------ 209

Query: 249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP 308
                 A            ++L   +     +      L+ +AGL G I +LL   L   
Sbjct: 210 ------ALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDR 263

Query: 309 ILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFA 352
           +    +LL   L      + +  +S +    +   A  +L   A
Sbjct: 264 LGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGA 307

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 55/344 (15%), Positives = 112/344 (32%), Gaps = 62/344 (18%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           LF+  FL G    ++ PA+  +         ++  L+   +G   +   LG  +   + G
Sbjct: 4   LFLGFFLSGLDRGLLSPALPLL--------AEDLGLSASQAGLIVSAFSLGYALGSLLAG 55

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD++GR+ +L L L L  +   +LA+  S+        L      +  G++   A A 
Sbjct: 56  YLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFL----LGLGGGALYPAAAAL 111

Query: 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLK 192
           +A+    ++R  A G+         + G L    L+ +  ++   ++  +    +     
Sbjct: 112 IAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLL----- 166

Query: 193 DDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAA 252
                                                         + LL     L   A
Sbjct: 167 ---------------------------------------------ALLLLFLLRLLLLLA 181

Query: 253 VVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE 312
           +  F       G+      +L+     +  +   L+ + GL G +  LL   L   +   
Sbjct: 182 LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRR 241

Query: 313 AKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSV 356
             LL +GL  A + + + +++ S  +           +      
Sbjct: 242 RLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPA 285

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 58  AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLT 117
           A   LG L+  P+ G L+D++GRK +L + L + ++  A+ A   +I+       L+   
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64

Query: 118 AMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQA 175
           A     +      A +AD     +R  A G++   ++   + G      L+    ++A
Sbjct: 65  AAFALVAGA----ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	357
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.98
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.98
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.98
PRK10133	438	L-fucose transporter; Provisional	99.97
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.97
PRK11663	434	regulatory protein UhpC; Provisional	99.97
PRK03699	394	putative transporter; Provisional	99.97
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.97
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.97
PRK09705	393	cynX putative cyanate transporter; Provisional	99.97
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.97
PRK03633	381	putative MFS family transporter protein; Provision	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.97
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.97
TIGR00891	405	2A0112 putative sialic acid transporter.	99.97
TIGR00893	399	2A0114 d-galactonate transporter.	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.97
PRK10642	490	proline/glycine betaine transporter; Provisional	99.97
PRK09874	408	drug efflux system protein MdtG; Provisional	99.97
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.97
PRK12307	426	putative sialic acid transporter; Provisional	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
TIGR00895	398	2A0115 benzoate transport.	99.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.97
PRK10504	471	putative transporter; Provisional	99.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.97
PRK10054	395	putative transporter; Provisional	99.97
PRK09952	438	shikimate transporter; Provisional	99.97
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.97
PRK05122	399	major facilitator superfamily transporter; Provisi	99.97
PLN00028	476	nitrate transmembrane transporter; Provisional	99.97
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.97
PRK10489	417	enterobactin exporter EntS; Provisional	99.97
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
PRK15075	434	citrate-proton symporter; Provisional	99.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.96
PRK12382	392	putative transporter; Provisional	99.96
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.96
PRK11043	401	putative transporter; Provisional	99.96
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.96
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.96
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.96
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.96
PRK15011	393	sugar efflux transporter B; Provisional	99.96
KOG2532	466	consensus Permease of the major facilitator superf	99.96
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.96
TIGR00901	356	2A0125 AmpG-related permease.	99.96
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.96
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.96
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.95
PRK03893	496	putative sialic acid transporter; Provisional	99.95
TIGR00898	505	2A0119 cation transport protein.	99.95
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.95
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.95
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.95
KOG2615	451	consensus Permease of the major facilitator superf	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.95
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.95
PRK09528	420	lacY galactoside permease; Reviewed	99.94
PRK11010	491	ampG muropeptide transporter; Validated	99.94
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.94
PRK11902	402	ampG muropeptide transporter; Reviewed	99.94
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.94
KOG0569	485	consensus Permease of the major facilitator superf	99.94
KOG2533	495	consensus Permease of the major facilitator superf	99.93
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.92
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.92
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.92
KOG0254	513	consensus Predicted transporter (major facilitator	99.91
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.91
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.9
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.9
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.89
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.89
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.88
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.88
PRK10429	473	melibiose:sodium symporter; Provisional	99.88
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.87
PF13347	428	MFS_2: MFS/sugar transport protein	99.87
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.87
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.86
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.86
PRK09669	444	putative symporter YagG; Provisional	99.86
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.86
PRK09848	448	glucuronide transporter; Provisional	99.86
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.85
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.83
COG2211	467	MelB Na+/melibiose symporter and related transport	99.83
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.82
PTZ00207	591	hypothetical protein; Provisional	99.82
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.81
PRK11462	460	putative transporter; Provisional	99.81
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.79
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.78
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.77
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.77
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.76
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.73
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.7
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.66
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.65
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.65
KOG3626	735	consensus Organic anion transporter [Secondary met	99.64
PRK10642	490	proline/glycine betaine transporter; Provisional	99.64
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.61
KOG2563	480	consensus Permease of the major facilitator superf	99.61
PRK09874	408	drug efflux system protein MdtG; Provisional	99.58
PRK09528	420	lacY galactoside permease; Reviewed	99.58
PRK15011	393	sugar efflux transporter B; Provisional	99.54
PRK05122	399	major facilitator superfamily transporter; Provisi	99.53
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.52
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.51
PRK10489	417	enterobactin exporter EntS; Provisional	99.51
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.51
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.49
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.49
PRK03893	496	putative sialic acid transporter; Provisional	99.49
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.48
PRK12382	392	putative transporter; Provisional	99.48
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.47
PRK03545	390	putative arabinose transporter; Provisional	99.47
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.47
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.46
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.45
PRK03633	381	putative MFS family transporter protein; Provision	99.45
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.44
PRK09705	393	cynX putative cyanate transporter; Provisional	99.44
PRK03699	394	putative transporter; Provisional	99.42
TIGR00893	399	2A0114 d-galactonate transporter.	99.41
PRK10504	471	putative transporter; Provisional	99.4
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.39
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.38
PRK09952	438	shikimate transporter; Provisional	99.38
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.38
PRK11663	434	regulatory protein UhpC; Provisional	99.36
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.36
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.33
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.33
PRK11010	491	ampG muropeptide transporter; Validated	99.32
KOG0637	498	consensus Sucrose transporter and related proteins	99.32
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.32
TIGR00891	405	2A0112 putative sialic acid transporter.	99.31
TIGR00900	365	2A0121 H+ Antiporter protein.	99.31
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.3
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.3
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.3
PRK10054	395	putative transporter; Provisional	99.28
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.27
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.25
TIGR00895	398	2A0115 benzoate transport.	99.25
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.25
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.23
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.23
PRK10091	382	MFS transport protein AraJ; Provisional	99.22
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.22
PLN00028	476	nitrate transmembrane transporter; Provisional	99.21
TIGR00898	505	2A0119 cation transport protein.	99.21
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.21
PRK12307	426	putative sialic acid transporter; Provisional	99.21
PRK15075	434	citrate-proton symporter; Provisional	99.21
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.2
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.19
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.19
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.18
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.17
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.15
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.15
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.15
PRK11902	402	ampG muropeptide transporter; Reviewed	99.14
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.13
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.13
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.13
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.11
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.11
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.09
KOG0569	485	consensus Permease of the major facilitator superf	99.08
TIGR00901	356	2A0125 AmpG-related permease.	99.07
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.07
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.06
PRK09848	448	glucuronide transporter; Provisional	99.06
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.06
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.05
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.05
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.04
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.03
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.03
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.03
PF13347	428	MFS_2: MFS/sugar transport protein	99.02
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.01
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.01
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.0
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.98
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.94
PRK10429	473	melibiose:sodium symporter; Provisional	98.92
PRK10133	438	L-fucose transporter; Provisional	98.91
COG0477	338	ProP Permeases of the major facilitator superfamil	98.88
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.88
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.88
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.87
PRK09669	444	putative symporter YagG; Provisional	98.86
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.84
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.83
PRK11043	401	putative transporter; Provisional	98.8
KOG3762	618	consensus Predicted transporter [General function	98.79
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.76
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.75
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.68
KOG2532	466	consensus Permease of the major facilitator superf	98.67
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.67
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.67
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.62
COG2211	467	MelB Na+/melibiose symporter and related transport	98.62
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.59
PRK11462	460	putative transporter; Provisional	98.58
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.53
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.5
PF12832	77	MFS_1_like: MFS_1 like family	98.49
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.49
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.46
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.44
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.39
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.36
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.31
KOG3810	433	consensus Micronutrient transporters (folate trans	98.27
PF12832	77	MFS_1_like: MFS_1 like family	98.26
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.26
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.21
KOG0254	513	consensus Predicted transporter (major facilitator	98.15
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.13
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.08
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.07
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.03
KOG3762	618	consensus Predicted transporter [General function	97.95
COG3202	509	ATP/ADP translocase [Energy production and convers	97.89
KOG2533	495	consensus Permease of the major facilitator superf	97.84
KOG2615	451	consensus Permease of the major facilitator superf	97.84
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.81
PTZ00207	591	hypothetical protein; Provisional	97.78
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.75
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.74
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.72
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.48
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.31
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.22
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.2
TIGR00805	633	oat sodium-independent organic anion transporter.	97.02
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.91
PRK03612	521	spermidine synthase; Provisional	96.88
KOG2563	480	consensus Permease of the major facilitator superf	96.81
KOG3880	409	consensus Predicted small molecule transporter inv	96.68
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.57
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.53
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.26
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.15
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.12
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.98
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	95.45
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	95.35
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	94.69
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	94.61
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	94.57
KOG2325	488	consensus Predicted transporter/transmembrane prot	94.43
KOG3097	390	consensus Predicted membrane protein [Function unk	94.31
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	94.25
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.2
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	93.33
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	91.78
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.44
KOG0637	498	consensus Sucrose transporter and related proteins	91.3
COG0477	338	ProP Permeases of the major facilitator superfamil	90.9
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	89.39
KOG3880	409	consensus Predicted small molecule transporter inv	88.04
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	87.33
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	87.15
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	86.61
KOG2881	294	consensus Predicted membrane protein [Function unk	82.83
KOG3810	433	consensus Micronutrient transporters (folate trans	81.93

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.6e-33  Score=239.71  Aligned_cols=285  Identities=19%  Similarity=0.231  Sum_probs=248.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      +..++.+.++.|.......+..+.+|++.+        +++++....|+..+.|.++..+++|+...+.||+.||++++.
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~--------dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~   83 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAA--------DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLG   83 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence            445677888888899999999999999987        457777889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      ...++.++++++++++|   ++.++++|++.|+ +.|.+++...++..|..|+++|++++++...+.+++.++|..+|.+
T Consensus        84 ~l~lFi~~n~l~alAp~---f~~Ll~aR~~~g~-a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~  159 (394)
T COG2814          84 LLALFIVSNLLSALAPS---FAVLLLARALAGL-AHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF  159 (394)
T ss_pred             HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999   9999999999999 8899999999999999999999999999999999998888666655


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhh
Q 018388          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (357)
Q Consensus       167 ----l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (357)
                          +|||+.|+..+.++++..+..+..+|  |++.+++                             ...+.++..+.+
T Consensus       160 ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~-----------------------------~~~~~~~~~~~l  208 (394)
T COG2814         160 LGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGS-----------------------------LPGPLRTLLRLL  208 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC-----------------------------CCcchhHHHHHh
Confidence                59999999999999999998888898  2111111                             111333434444


Q ss_pred             hcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHH
Q 018388          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (357)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (357)
                       |+|.++...+..++...+++..++|+..+++|..|++.+..++....++++..+++ .+.|++.|| +.|+.+.....+
T Consensus       209 -~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn-~~gGrl~dr-~~~~~l~~~~~l  285 (394)
T COG2814         209 -RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGN-LLGGRLADR-GPRRALIAALLL  285 (394)
T ss_pred             -cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHH-HHHhhhccc-cchhHHHHHHHH
Confidence             58999999999999999999999999999999999999999999999999999999 899999999 888888888888


Q ss_pred             HHHHHHHHHhcCcch
Q 018388          323 ACINMFICSISWSAW  337 (357)
Q Consensus       323 ~~i~~~~~~~~~~~~  337 (357)
                      ..+..+.+.+..+..
T Consensus       286 ~a~~~l~l~~~~~~~  300 (394)
T COG2814         286 LALALLALTFTGASP  300 (394)
T ss_pred             HHHHHHHHHHhcchH
Confidence            888777776655443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=2.3e-32  Score=250.69  Aligned_cols=336  Identities=16%  Similarity=0.099  Sum_probs=254.3

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchh
Q 018388            4 EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM   83 (357)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~   83 (357)
                      .+++..+..+++..++..++.+++...+|.+.+|        ++.+..+.+|+.+.+.++...+.+++|+++||+|||++
T Consensus         2 ~~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~--------l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~   73 (495)
T PRK14995          2 FRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMT--------LGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL   73 (495)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            3445567788999999999999999999999764        45555667999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCC-CccchhHHHHHHHHHHHHHHHhhHh
Q 018388           84 LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTL  162 (357)
Q Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~  162 (357)
                      ++.+.++..++++++++++|   ++.++++|+++|+ +.+...+.....+.+.+ |+++|++++++......+|..+||.
T Consensus        74 l~~~~~~~~~~~~~~~~a~~---~~~li~~r~l~G~-g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~  149 (495)
T PRK14995         74 LMLGGTLFGLASLAAAFSPT---ASWLIATRALLAI-GAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPL  149 (495)
T ss_pred             HHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999   9999999999999 66777777787776665 6899999999999999999999999


Q ss_pred             hhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccccccc---------ccccccCCCCCCC-----
Q 018388          163 AARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEE---------TEGVNQNESNSPV-----  224 (357)
Q Consensus       163 ~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-----  224 (357)
                      +++.+    +|||.|++...+.++..++..+.+||++++++++.|..+.....         ..+...++.....     
T Consensus       150 lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  229 (495)
T PRK14995        150 VGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTL  229 (495)
T ss_pred             HHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHH
Confidence            99886    89999999988877777777777888655443333433221100         0000000000000     


Q ss_pred             ----------CccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHH
Q 018388          225 ----------KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLA  294 (357)
Q Consensus       225 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  294 (357)
                                ...+.+.+++..+ .+ ++++|.+....+..++......+...++|.|+++.+|+++.++|.......+.
T Consensus       230 ~~~~~~l~~f~~~e~~~~~p~~~-~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~  307 (495)
T PRK14995        230 LTGALLLGLFIRTQLAASRPMID-MR-LFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVA  307 (495)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcC-HH-HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                      0001111222222 22 34577887777777777777778888999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhc---CcchHHHH-HHHHHHhhhcccc
Q 018388          295 GTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS---WSAWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       295 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~p  354 (357)
                      ..++. .+.|++.||+++|+.+..+..+..++...+...   ++.+..+. ..+.++|.+...+
T Consensus       308 ~~~~~-~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~  370 (495)
T PRK14995        308 SGFSG-PIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALL  370 (495)
T ss_pred             HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHH
Confidence            99988 888999999999999888888888777655442   23333333 4555777666554

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=2.2e-31  Score=237.79  Aligned_cols=294  Identities=14%  Similarity=0.145  Sum_probs=221.7

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      ++.+.+..++.........+.+|.+.+        +++.+..+.|+..+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~--------~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   82 (390)
T PRK03545         11 VVTLALAAFIFNTTEFVPVGLLSDIAQ--------SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFV   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHcchHHHHh--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            444555555554554555667787765        456677888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh--
Q 018388           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (357)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--  167 (357)
                      +..++++.+.++++   ++.+++.|+++|+ +.+...+...+++.|++|+|+|++++++.....++|..+||.+++.+  
T Consensus        83 ~~~~~~~~~~~~~~---~~~l~~~r~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~  158 (390)
T PRK03545         83 LFIASHVLSALAWN---FTVLLISRIGIAF-AHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ  158 (390)
T ss_pred             HHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            99999999999999   8999999999999 66777788999999999999999999999999999999999888764  


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcc
Q 018388          168 --STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (357)
Q Consensus       168 --~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (357)
                        +||+.|++.+++.++..+.....+||+++++++                                 +.++..+ ..|+
T Consensus       159 ~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~-~~~~  204 (390)
T PRK03545        159 YLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHSG---------------------------------SLKSLPL-LFRR  204 (390)
T ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc---------------------------------hHHHHHH-HHhC
Confidence              899999999888776666555556654321100                                 1122222 4457


Q ss_pred             cchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHH
Q 018388          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (357)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i  325 (357)
                      |.++......++.........++++.|+++..|.++.+.+...+..+++..+++ ++.+++.||+++|... .+..+...
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~~~-~~~~~~~~  282 (390)
T PRK03545        205 PALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGS-VLFSRLGNRHPSGFLL-IAIALLLV  282 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-HHHHHHhhccchhHHH-HHHHHHHH
Confidence            777666665555555566667788888888789999999999999999999988 8889999999987654 44444444


Q ss_pred             HHHH-HHhcCcchHHHH-HHHHHHhhhc
Q 018388          326 NMFI-CSISWSAWVPYA-TTAFSVLVVF  351 (357)
Q Consensus       326 ~~~~-~~~~~~~~~~~~-~~~~~~~~~~  351 (357)
                      +... ....++.+..+. ..+.+++.+.
T Consensus       283 ~~~~l~~~~~~~~~~~~~~~l~g~~~~~  310 (390)
T PRK03545        283 CLLLLLPAANSEWHLSVLSIFWGIAIMC  310 (390)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHhc
Confidence            4333 334444444333 3445555443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=6.3e-31  Score=235.80  Aligned_cols=305  Identities=12%  Similarity=0.069  Sum_probs=226.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.+..+++..+++..+........|.+.+        +++++..+.|++.+++.+++.+++++.|+++||+|||+++..
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~--------~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~   78 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGK--------DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG   78 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHh--------hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence            455666777777888888888888886543        567777889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      +.++..++..+++++++   ++.+++.|+++|+ +.+...|....++.|++|+|+|++++++++...++|..++|.++++
T Consensus        79 ~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~  154 (412)
T TIGR02332        79 IMVLWGIASTATMFATG---PESLYLLRILVGI-AEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGY  154 (412)
T ss_pred             HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   8899999999999 7677778888999999999999999999999999999999988875


Q ss_pred             h----------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcc-cccccccccccCCCCCCCCccccccchhH
Q 018388          167 L----------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRP-IITEETEGVNQNESNSPVKIPVCKKIPSI  235 (357)
Q Consensus       167 l----------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (357)
                      +          +||+.|++.++..++..++.++++||+|++++.-.+.++ ......+..+.+.++ +.. ...+.....
T Consensus       155 l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~  232 (412)
T TIGR02332       155 ILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQ-PEG-AFAHAAMPQ  232 (412)
T ss_pred             HHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccc-ccc-ccccccccH
Confidence            3          899999998888777666677778888754321000000 000000000000000 000 000111111


Q ss_pred             HHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhh-cccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhH
Q 018388          236 RDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ-FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (357)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (357)
                      ++.++.++ ++.++...+..++.........+++|.|+++. .|.+..+.+.+.....++..++. ++.+++.||+++|+
T Consensus       233 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~-l~~g~l~dr~~~r~  310 (412)
T TIGR02332       233 RSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGM-IWWSRHSDRLKERK  310 (412)
T ss_pred             HHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHH-HHHHHHhcccCccH
Confidence            22233344 46677777777888788888899999999873 46777888888899999988988 89999999998766


Q ss_pred             H-HHHHHHHHHHHH
Q 018388          315 L-LSLGLFAACINM  327 (357)
Q Consensus       315 ~-~~~~~~~~~i~~  327 (357)
                      . .........++.
T Consensus       311 ~~~~~~~~~~~~~~  324 (412)
T TIGR02332       311 HHTALPYLFAAAGW  324 (412)
T ss_pred             HHHHHHHHHHHHHH
Confidence            4 344444444443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=1.8e-30  Score=229.95  Aligned_cols=306  Identities=15%  Similarity=0.144  Sum_probs=235.9

Q ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHH
Q 018388           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (357)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~   91 (357)
                      .+....++..++..+..+.+|.+..+        .+.+..+.|++.+++.++..++++++|+++||+|||+++..+.++.
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~   74 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVLA--------GTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIR   74 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHH--------hhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHH
Confidence            45678888999999999999998864        3556678899999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHcc-----chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           92 IIPLAILAYRR-----SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        92 ~~~~~~~~~~~-----~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      .++..+..+++     +   ++.+++.|+++|+ +.+...+...+++.|+.|+|+|++++++.+....+|..+||.+++.
T Consensus        75 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  150 (365)
T TIGR00900        75 AVLVAVLPFVALLGGLN---IWQVYVLAGILAI-AQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL  150 (365)
T ss_pred             HHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            88888877776     7   8889999999999 7788889999999999999999999999999999999999998877


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhh
Q 018388          167 L----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (357)
Q Consensus       167 l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (357)
                      +    +||+.|++.++..++..+..+. .++++++++++++                       .+++..++.++..+.+
T Consensus       151 l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~  206 (365)
T TIGR00900       151 MYATLGIKWAIWVDAVGFAISALLIVS-VRIPELAASEIQA-----------------------LSNAVLRDTREGIKFV  206 (365)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHh-cccccCCCccccc-----------------------cchhHHHHHHhHHHHH
Confidence            4    8999999887765554443332 3221111111000                       0000011222334446


Q ss_pred             hcccchHHHHHHHHHHHHhhhhhh-HHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHH
Q 018388          243 RSSVTLSQAAVVAFFSGLSEGGMQ-ASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (357)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (357)
                      +++|.++...+..++......... .+.|.|.++.+|.++.+.+.......++..++. ++.+++.||.++|+.+..+..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~  285 (365)
T TIGR00900       207 LKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGA-LLLGLLGRYFKRMALMTGAIF  285 (365)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhchhHHHHHHHH
Confidence            678888888777777777666665 888999988789999999999999999988888 788999999999999888877


Q ss_pred             HHHHHHHHHHhcCc-chHHHH-HHHHHHhhhcccc
Q 018388          322 AACINMFICSISWS-AWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       322 ~~~i~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~p  354 (357)
                      +.+++...+.+.++ .+..+. ..+.+++.+...|
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  320 (365)
T TIGR00900       286 VIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINV  320 (365)
T ss_pred             HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            77777777666654 443333 4455666655544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=5e-30  Score=228.84  Aligned_cols=285  Identities=18%  Similarity=0.165  Sum_probs=229.3

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh
Q 018388            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (357)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~   85 (357)
                      +++....+....++...+..+..|.+|.+.++        ++.+..+.|++.+.+.++..++.++.|+++||+|||+.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~   74 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAFPEIAAD--------LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLL   74 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHH
Confidence            34555566666677788889999999988764        4556678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhH
Q 018388           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  165 (357)
                      .+.++..++.+...++++   ++.+++.|++.|+ +.+...+...+++.|++|+|+|+++++..+....+|..+||.+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  150 (385)
T TIGR00710        75 LGLFIFALSSLGLALSNN---IETLLVLRFVQAF-GASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG  150 (385)
T ss_pred             HHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHc-chhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998   8889999999999 777777899999999999999999999999999999999998888


Q ss_pred             Hh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHh
Q 018388          166 FL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL  241 (357)
Q Consensus       166 ~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (357)
                      .+    +||+.|++.+++..+..+..++..||++++++++                            +.++..++ .+.
T Consensus       151 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~-~~~  201 (385)
T TIGR00710       151 YILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI----------------------------QISTYFET-FLL  201 (385)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC----------------------------CHHHHHHH-HHH
Confidence            64    8999999888877766666666666654322110                            00111122 233


Q ss_pred             hhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHH
Q 018388          242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (357)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (357)
                      ..++|+++...+...+..........+.|.+.++.+|.++.+.+.+.....++..+++ ++.+++.||+++|+.+..+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~  280 (385)
T TIGR00710       202 LLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGG-FLNGRFIKKWGAKSLLRMGLI  280 (385)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHH
Confidence            4567777777766666666667777788989888889999999999999999888888 888999999999998888877


Q ss_pred             HHHHHHHHHHh
Q 018388          322 AACINMFICSI  332 (357)
Q Consensus       322 ~~~i~~~~~~~  332 (357)
                      +..++..++..
T Consensus       281 ~~~~~~~~~~~  291 (385)
T TIGR00710       281 LFAVSAVLLEI  291 (385)
T ss_pred             HHHHHHHHHHH
Confidence            77776655544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=6e-30  Score=227.69  Aligned_cols=279  Identities=15%  Similarity=0.210  Sum_probs=224.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.++.+.+..+....+.....+.+|.+.+|        ++.+..+.|+..+.+.++..+++++.|+++||+|||+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~   73 (382)
T PRK10091          2 KKVILSLALGTFGLGMAEFGIMGVLTELAHD--------VGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLF   73 (382)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHhChHHHHHH--------cCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence            3467788888899999999999999998763        45566778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      +.++.+++.++++++++   ++.+++.|+++|+ +.+...+....++.|+.|+++|+++++....+..+|..+||.+++.
T Consensus        74 ~~~~~~~~~~l~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  149 (382)
T PRK10091         74 LVALCVIGNAMFTLSSS---YLMLAIGRLVSGF-PHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY  149 (382)
T ss_pred             HHHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999   8999999999999 7677777888889999999999999999999999999999988876


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhh
Q 018388          167 L----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (357)
Q Consensus       167 l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (357)
                      +    +||+.|++.+++..+..+..++.+||.+++++.                                 +.++..+.+
T Consensus       150 l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~---------------------------------~~~~~~~~~  196 (382)
T PRK10091        150 LSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG---------------------------------GLREQFHFL  196 (382)
T ss_pred             HhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc---------------------------------CHHHHHHHh
Confidence            4    899999999887776666556667775321110                                 001112223


Q ss_pred             hcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHH
Q 018388          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (357)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (357)
                       +++..+......++.........++++.|.++.+|+++.+.+.+.+..+++..+++ ++.+++.||+++|+.+..+..+
T Consensus       197 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~~r~~~~~~~~~~~~~  274 (382)
T PRK10091        197 -RSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGN-LLSGRLSGRYSPLRIAAVTDFI  274 (382)
T ss_pred             -cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh-HHHheeccccCchhHHHHHHHH
Confidence             35555555544444444444556677778887779999999999999999999998 8889999999999998888888


Q ss_pred             HHHHHHHHHh
Q 018388          323 ACINMFICSI  332 (357)
Q Consensus       323 ~~i~~~~~~~  332 (357)
                      .+++.+++..
T Consensus       275 ~~i~~~~~~~  284 (382)
T PRK10091        275 IVLALLMLFF  284 (382)
T ss_pred             HHHHHHHHHH
Confidence            7777655543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.7e-30  Score=219.59  Aligned_cols=320  Identities=14%  Similarity=0.120  Sum_probs=248.7

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      +..++++.....+..-......|.+.++        .+++..+.|++.+.+.+.+.++..+.|.++||.++|+.+-.+++
T Consensus        31 f~~~fiGYa~fYl~RknF~~a~p~l~e~--------~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi  102 (448)
T COG2271          31 FLSIFIGYAAFYLTRKNFNLAMPALIED--------GGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI  102 (448)
T ss_pred             HHHHHHHHHHHHHHHHhHhhccHHHHHh--------cCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence            3444555555556666667778888763        34677889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh--HHh
Q 018388           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA--RFL  167 (357)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l  167 (357)
                      ++++.+++++++++   ++.+.+..+++|. .+|.-.|.+...+++|+|++|||+..++.+.+.++|..+.|++.  +++
T Consensus       103 lsai~nil~Gfs~s---~~~~~~l~~lng~-fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~  178 (448)
T COG2271         103 LSAIVNILFGFSPS---LFLFAVLWVLNGW-FQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF  178 (448)
T ss_pred             HHHHHHHHHhhhhH---HHHHHHHHHHHHH-HhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence            99999999999998   9999999999999 67878899999999999999999999999999999999888877  554


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCcccccc-chhHHHHHHhh
Q 018388          168 ----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK-IPSIRDLICLL  242 (357)
Q Consensus       168 ----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  242 (357)
                          +||..|++.++++++..++.++..+|+|++..-..-         ++.+++..+.. +++++++ ...+....+.+
T Consensus       179 ~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~i---------e~~~~d~~e~~-~~~~~~~~ls~~~i~~~YV  248 (448)
T COG2271         179 AFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPI---------EEYRGDPLEIY-EEEKENEGLTAWQIFVKYV  248 (448)
T ss_pred             HhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCH---------HHhhcCchhhh-hhhccCCCccHHHHHHHHH
Confidence                899999999999999989888888888875432100         00000000000 1111111 22234445667


Q ss_pred             hcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhcc--chhHHH-HHH
Q 018388          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKLL-SLG  319 (357)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~-~~~  319 (357)
                      .+||.+|.+.++.++....-.++..|.|.|+.|..|+|..+++...+.+-.+++.+. +++|+++||.  |||... ++.
T Consensus       249 L~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~-Ll~GwlSDklfkgrR~p~~~i~  327 (448)
T COG2271         249 LKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGT-LLAGWLSDKLFKGRRGPMALIF  327 (448)
T ss_pred             HcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHH-HHHHHHHHHhcccccchHHHHH
Confidence            889999999999999999999999999999999999999999999999999999999 9999999986  455554 444


Q ss_pred             HHHHHHHHHHHHhcCcc-hHHHHHHHHHHhhhcc
Q 018388          320 LFAACINMFICSISWSA-WVPYATTAFSVLVVFA  352 (357)
Q Consensus       320 ~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~  352 (357)
                      ++...++.+.+...++. ..+....++.+|.-+.
T Consensus       328 ~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~Iy  361 (448)
T COG2271         328 MLLITASLVLYWLAPNGSYLLDAILLFIIGFLIY  361 (448)
T ss_pred             HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHh
Confidence            55555556566666654 2333344444444433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=8.3e-30  Score=227.24  Aligned_cols=293  Identities=12%  Similarity=0.142  Sum_probs=214.6

Q ss_pred             HHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHH
Q 018388           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (357)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~   93 (357)
                      ....+..........+.+|.+.+        +++.+..+.|+..+.+.++..+++++.|+++||+|||+.+..+.++.++
T Consensus        26 ~~~~~~~~~~~~~~~~~l~~~~~--------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~   97 (394)
T PRK10213         26 AFCVACLIIVEFLPVSLLTPMAQ--------DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence            33333344444455567777654        4567778889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hh
Q 018388           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----ST  169 (357)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~  169 (357)
                      +.+++.++++   ++.+++.|+++|+ +.+...+...+++.|++|+|+|++++++.....++|..+||.+++.+    +|
T Consensus        98 ~~~~~~~~~~---~~~l~~~r~l~G~-~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw  173 (394)
T PRK10213         98 SCLLVSFANS---FSLLLIGRACLGL-ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGW  173 (394)
T ss_pred             HHHHHHHHCh---HHHHHHHHHHHHH-hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence            9999999988   9999999999999 76778899999999999999999999999999999999999988875    89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchH
Q 018388          170 TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS  249 (357)
Q Consensus       170 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (357)
                      |+.|++.+++.++..+......||+++++++                              ..   ++..+ ..++|.++
T Consensus       174 ~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~------------------------------~~---~~~~~-~l~~~~~~  219 (394)
T PRK10213        174 RNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH------------------------------QK---QNTFR-LLQRPGVM  219 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCccccc------------------------------ch---hHHHH-HhcCHHHH
Confidence            9999998877665544444445664321100                              00   11122 34577777


Q ss_pred             HHHHHHHHHHHhhhhhhHHH-HHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHH
Q 018388          250 QAAVVAFFSGLSEGGMQASF-LYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (357)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~  328 (357)
                      ...+..++.........++. |.|.+ .+|+++.+.+......+++..++. ++.+++.||.+++..+..........++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~iig~-~~~~~l~~r~~~~~l~~~~~~~~~~~~~  297 (394)
T PRK10213        220 AGMIAIFMSFAGQFAFFTYIRPVYMN-LAGFGVDGLTLVLLSFGIASFVGT-SLSSFILKRSVKLALAGAPLVLAVSALV  297 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence            76665555555555666666 55554 569999999999999999999988 8889999996544334433333444444


Q ss_pred             HHHhcCcchHHHH-HHHHHHhhhcccc
Q 018388          329 ICSISWSAWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       329 ~~~~~~~~~~~~~-~~~~~~~~~~~~p  354 (357)
                      +....++.+.... ..+.+++.+...|
T Consensus       298 l~~~~~~~~~~~~~~~l~G~~~~~~~~  324 (394)
T PRK10213        298 LTLWGSDKIVATGVAIIWGLTFALVPV  324 (394)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHhhhH
Confidence            4444445544443 4555666666555

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=2.1e-30  Score=238.26  Aligned_cols=330  Identities=12%  Similarity=0.100  Sum_probs=248.8

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      .+..+.+..++..++..+..+.+|.+.++        ++.+..+.|++.+.+.++..++.++.|+++||+|||+.++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   74 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGD--------LGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLIST   74 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHH
Confidence            35567788888999999999999998764        3445567799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-
Q 018388           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (357)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-  167 (357)
                      ++..++.++++.+++   ++.+++.|+++|+ +.+...+...+++.|++|+|+|++++++......+|..+||.+++++ 
T Consensus        75 ~~~~~~~~~~~~~~~---~~~l~~~~~~~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  150 (485)
T TIGR00711        75 FAFTLGSLLCGVAPN---LELMIIFRVIQGF-GGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII  150 (485)
T ss_pred             HHHHHHHHHHhCcCC---HHHHHHHHHHHHh-hhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence            999999999999999   8899999999999 76777889999999999999999999999999999999999998875 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccccccc----------ccccccCCCCCCCC---------
Q 018388          168 ---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEE----------TEGVNQNESNSPVK---------  225 (357)
Q Consensus       168 ---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---------  225 (357)
                         +||+.|++.+.+.++..++..+..||+++.++++.|..+.....          .+..+.++.+.+..         
T Consensus       151 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (485)
T TIGR00711       151 ENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLV  230 (485)
T ss_pred             cCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Confidence               89999999888877776666677777554433333322211000          00000000000000         


Q ss_pred             ------ccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHH
Q 018388          226 ------IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQ  299 (357)
Q Consensus       226 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  299 (357)
                            ..+.+++++..+ .+ ++++|+++...+..++..........++|.|+++.+|+++.+.+.......++..++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~  308 (485)
T TIGR00711       231 AIIAFVVWELTDDNPLVD-LR-LFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSS  308 (485)
T ss_pred             HHHHHHHHHHcCCCCccC-HH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence                  000011111111 12 3457777777888888888888888999999999899999999999999999988888


Q ss_pred             HHHHhhhhhccchhHHHHHHHHHHHHHHHHHHh--cC--cchHHHH-HHHHHHhhhccc
Q 018388          300 LLFMPLLAPILGEAKLLSLGLFAACINMFICSI--SW--SAWVPYA-TTAFSVLVVFAT  353 (357)
Q Consensus       300 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~--~~--~~~~~~~-~~~~~~~~~~~~  353 (357)
                       ++.+++.||+++|+.+..+..+.+++..++.+  .+  +.+.... ..+.+++.+...
T Consensus       309 -~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~  366 (485)
T TIGR00711       309 -PIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFF  366 (485)
T ss_pred             -HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence             88899999999999999998888888777663  22  2222222 345566655543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.98  E-value=1.6e-30  Score=229.13  Aligned_cols=310  Identities=24%  Similarity=0.295  Sum_probs=230.8

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHH
Q 018388           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (357)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~   92 (357)
                      +++..++..++.....+.+|.+..+       +++.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++..
T Consensus         1 L~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~   73 (352)
T PF07690_consen    1 LFLAFFLSGFGFSIISPALPLYLAE-------ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFA   73 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHC-------CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhh
Confidence            3567788888999999999954432       455666778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----h
Q 018388           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S  168 (357)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~  168 (357)
                      ++..+..++++   .+.+++.|++.|+ +.+...+...+++.|++|+|+|++++++.+...++|..+||.+++.+    +
T Consensus        74 ~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~  149 (352)
T PF07690_consen   74 LGSLLLAFASN---FWLLLIARFLLGI-GSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG  149 (352)
T ss_dssp             HHHHHHHHHCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH
T ss_pred             hHHHHhhhhhh---HHHHhhhcccccc-ccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc
Confidence            99666666677   7789999999999 76788899999999999999999999999999999999999999885    7


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccch
Q 018388          169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTL  248 (357)
Q Consensus       169 ~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (357)
                      ||+.|++.+++.++..++...+.++++++++++.+.++              +       ++.++++++.++.+++++.+
T Consensus       150 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~--------------~-------~~~~~~~~~~~~~~~~~~~~  208 (352)
T PF07690_consen  150 WRWAFLISAILSLIAAILFILFLPEPPPPRERESPKES--------------E-------SKKPKPLKPGFKSLFKNPVL  208 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTT--------------T---------HHHCCCH-CTHHHHHHCC
T ss_pred             cccccccccchhhhhhhhHhhhhhhccccccccccccc--------------c-------cccccccccccccccccchh
Confidence            99999999998887766555556655544433211000              0       00111222223335556766


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHhhhhhcccC-cchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHH
Q 018388          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFN-KNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (357)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~  327 (357)
                      +......+...........++|.|+++.+|++ ..+.+.......+...+++ ++.+++.||+++++..........+..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~  287 (352)
T PF07690_consen  209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGS-LLAGRLSDRFGRRRRLLIAILLLILGA  287 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            65566666666677788999999988888999 7888989999999999988 888999999998777776666666665


Q ss_pred             HHHHhcC---cchHHH-HHHHHHHhhhccccc
Q 018388          328 FICSISW---SAWVPY-ATTAFSVLVVFATPS  355 (357)
Q Consensus       328 ~~~~~~~---~~~~~~-~~~~~~~~~~~~~p~  355 (357)
                      +.+.+..   +....+ ...+.+++.+...|.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  319 (352)
T PF07690_consen  288 LGLLLLPFSSSPVWLIIALFLIGFGFGIVFPI  319 (352)
T ss_dssp             HHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5544422   223333 345567766665553

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.98  E-value=3.5e-29  Score=224.80  Aligned_cols=302  Identities=14%  Similarity=0.105  Sum_probs=229.0

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHH
Q 018388           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (357)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~   92 (357)
                      +.+..++..++..++.|.+|.+.++        ++.+..+.++..+.+.++..++.++.|+++||+|||+++..+.....
T Consensus        18 ~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~   89 (406)
T PRK15402         18 LVLFEFATYIANDMIQPGMLAVVED--------FNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFI   89 (406)
T ss_pred             HHHHHHHHHhhhhhHhcchHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            3444455556778888899987654        45556778999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----h
Q 018388           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S  168 (357)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~  168 (357)
                      ++.+.+..+++   ++.+++.|+++|+ +.+...+...+.+.|.+|+++|.+.++.......+|..+||.+++.+    +
T Consensus        90 ~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~  165 (406)
T PRK15402         90 LTCLAILLAQS---IEQFTLLRFLQGI-GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP  165 (406)
T ss_pred             HHHHHHHHHcc---HHHHHHHHHHHHh-HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999998   8888999999999 66777788899999999999999999999888888889999888764    8


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccch
Q 018388          169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTL  248 (357)
Q Consensus       169 ~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (357)
                      ||+.|++.+++.++..+..++..||++++++++                           .+ ..+..+..+..+++|.+
T Consensus       166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~-~~~~~~~~~~~~~~~~~  217 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLWRAMPETAGRVGEK---------------------------LS-LKELGRDYKLVLKNRRF  217 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc---------------------------cc-HHHHHHHHHHHHcCcHH
Confidence            999999988887766665556667654322110                           00 01112223345568888


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHH
Q 018388          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (357)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~  328 (357)
                      +...+..++..........+.|.|+++.+|+++.+.+.......++..++. ++.+++.||+++|+.+..+.....++..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~-~~~g~l~~r~~~~~~~~~~~~~~~~g~~  296 (406)
T PRK15402        218 VAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGN-LTLARLTSRRPLRSLIRMGLWPMVAGLL  296 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            777777666666666667778888888789999888888777777777777 8889999999999999888887777766


Q ss_pred             HHHhcC-----cchHHHH-HHHHHHhhhccccc
Q 018388          329 ICSISW-----SAWVPYA-TTAFSVLVVFATPS  355 (357)
Q Consensus       329 ~~~~~~-----~~~~~~~-~~~~~~~~~~~~p~  355 (357)
                      ++...+     +.+.... ..+.+.+.+...|.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~  329 (406)
T PRK15402        297 LAALATVISSHAYLWLTAGLSLYAFGIGLANAG  329 (406)
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHHHHHHhhh
Confidence            655421     2222222 45566676665543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.98  E-value=2.6e-29  Score=224.00  Aligned_cols=306  Identities=12%  Similarity=0.124  Sum_probs=220.9

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      |+++.++.+.++..++..+.....+.+.++        .+.+..+.+++.+.+.+++.++.|++|+++||+|||++++.+
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~   74 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALLKE--------LHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIA   74 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHH
Confidence            356778889999998877776666766543        233456679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      .++..++.+.+.++++   .   ++.|+++|+ +.+...|...+++.|++|+|+|++++++.+....+|.++||.++|.+
T Consensus        75 ~~~~~~~~~~~~~~~~---~---~~~r~l~G~-~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195         75 NGIKLLGCLLMLFGIH---P---LLAYGLVGI-GAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             HHHHHHHHHHHHHHHH---H---HHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888777665   3   678999999 77888899999999999999999999999999999999999999986


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhc
Q 018388          168 ---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (357)
Q Consensus       168 ---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (357)
                         .|+..+.+.+...++. .+..+.+||++++++++++                       +..+...+.++..+.+++
T Consensus       148 ~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~  203 (393)
T PRK11195        148 ADPHAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQSW-----------------------NPIALLRDFFHACRVLWR  203 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccCC-----------------------CHHHHHHHHHHHHHHHHh
Confidence               3455555554443322 3344567776533221100                       000001112222334556


Q ss_pred             ccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHH
Q 018388          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (357)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  324 (357)
                      +|.+........+...........+|.|.++.+|.++.+.|......+++..+++ +..+++.||.++++.+..+.. .+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~-~~~~~l~~~~~~~~~~~~g~~-~~  281 (393)
T PRK11195        204 DKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGA-GAAARLVTLETVLRVLPAGIL-MG  281 (393)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH-HHHHHHhcCCcccchHHHHHH-HH
Confidence            7776665555555555556667778888998899999999999999999999988 888999999888887777653 33


Q ss_pred             HHHHHHHhcCcchHHHH-HHHHHHhhhcccc
Q 018388          325 INMFICSISWSAWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       325 i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p  354 (357)
                      +....+.+.++.+.... ..+.+++.+...+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~  312 (393)
T PRK11195        282 LVVLLMALQHSLLPAYPLLILIGALGGFFVV  312 (393)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Confidence            44444444444443333 3455666665544

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=6.4e-29  Score=223.93  Aligned_cols=307  Identities=14%  Similarity=0.091  Sum_probs=226.7

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      .+..+.+..++..+......+..|.+.+        +++++..+.|+..+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~--------~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~   98 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQ--------AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            3455666777778888888888898854        44666788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH---HHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhH
Q 018388           89 TLSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (357)
Q Consensus        89 ~~~~~~~~~~---~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  165 (357)
                      ++..++.+++   ..+++   ++.++++|+++|+ +.+...+..+.++.|..|+++|.+.++..+..+.+|..+||.+++
T Consensus        99 ~~~~~~~~l~~~~~~a~~---~~~ll~~r~l~G~-g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133         99 FLYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH-HHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999875   45778   8899999999999 778888899999999877777777899999999999999987754


Q ss_pred             H------------------------------hhhHHHHHHHHHHHH-HHHHHHHHhccCCCCCCCCCCCCcccccccccc
Q 018388          166 F------------------------------LSTTSAFQAATIVSM-LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEG  214 (357)
Q Consensus       166 ~------------------------------l~~~~~f~~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  214 (357)
                      .                              .+||++|+....+.. +..+......||.++++++              
T Consensus       175 ~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~--------------  240 (438)
T PRK10133        175 SLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS--------------  240 (438)
T ss_pred             HHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc--------------
Confidence            2                              245666654333322 2222222233432111000              


Q ss_pred             cccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhh-hhhcccCcchHHHHHHHHHH
Q 018388          215 VNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFL-KAQFHFNKNQFADLMLIAGL  293 (357)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~  293 (357)
                                +   .+..+..++. +.+.++|.++...+..++....+.....+.+.|+ ++.+|.++.+++.......+
T Consensus       241 ----------~---~~~~~~~~~~-~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~  306 (438)
T PRK10133        241 ----------D---AKQGSFSASL-SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMV  306 (438)
T ss_pred             ----------c---ccccchhhhH-HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Confidence                      0   0000011121 2244577777777777777777777788888885 66779999999999999999


Q ss_pred             HHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhcccccC
Q 018388          294 AGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSV  356 (357)
Q Consensus       294 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  356 (357)
                      +..+++ +..+++.||+++|+++..+..+..+++.+..+.++.+......+++++.+..+|..
T Consensus       307 ~~~vG~-~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~  368 (438)
T PRK10133        307 CFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTI  368 (438)
T ss_pred             HHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence            999999 89999999999999988888777777666555554333334566788888877753

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.97  E-value=6.7e-29  Score=223.10  Aligned_cols=300  Identities=15%  Similarity=0.113  Sum_probs=224.4

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      +...+...++..++.....+..|.+.++        ++.+..+.|++.+.+.++..++.++.|+++||+|||+++..+.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (406)
T PRK11551         17 IGLCFLVALLEGLDLQSAGVAAPRMAQE--------FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            3445566677778888888888888653        45566788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh--
Q 018388           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (357)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--  167 (357)
                      +..++.+++.++++   ++.+++.|+++|+ +.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+  
T Consensus        89 ~~~~~~~~~~~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  164 (406)
T PRK11551         89 LFGLFSLATAQAWD---FPSLLVARLLTGV-GLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG  164 (406)
T ss_pred             HHHHHHHHHHHhcc---HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999888999998   8889999999999 76777789999999999999999999999999999999999888664  


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcc
Q 018388          168 --STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (357)
Q Consensus       168 --~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (357)
                        +||+.|++.+++.++..+...+.+||++++++++.+                     +   .+++...++..+. .++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------------------~---~~~~~~~~~~~~~-~~~  219 (406)
T PRK11551        165 DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA---------------------G---KQRAPVLRALFGE-GRA  219 (406)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc---------------------c---hhhhhhHHHHhhh-hhh
Confidence              799999988776666655556667886543222100                     0   0000001111110 012


Q ss_pred             cchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHH
Q 018388          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (357)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i  325 (357)
                      +..+......+...........+.|.|+++. |+++.+.+.......++..+++ ++.+++.||+++|+.+..+.....+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~  297 (406)
T PRK11551        220 TATLLLWISYFFTLIVLYFLLNWLPSLLVGQ-GLSRSQAGLVQIAFNIGGALGS-LLIGALMDRLRPRRVVLLIYAGILA  297 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            2233333444444455666778899999885 9999999999999999999988 8889999999999998887777777


Q ss_pred             HHHHHHhcCcchHHHH-HHHHHHh
Q 018388          326 NMFICSISWSAWVPYA-TTAFSVL  348 (357)
Q Consensus       326 ~~~~~~~~~~~~~~~~-~~~~~~~  348 (357)
                      +...+.+.++.+.... ..+.+++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~g~~  321 (406)
T PRK11551        298 SLAALAAAPSFAGMLLAGFAAGLF  321 (406)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHH
Confidence            7666666655544333 3333443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.97  E-value=8.3e-29  Score=223.86  Aligned_cols=277  Identities=12%  Similarity=0.058  Sum_probs=210.7

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      +....+..+...++.....+.+|.+.+        +++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~   96 (434)
T PRK11663         25 LITMYLGYALFYFTRKSFNAAMPEMLA--------DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLI   96 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHH
Confidence            334455666666666677778888865        456667788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh--
Q 018388           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (357)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--  167 (357)
                      +..++.++++++++   ++.+++.|++.|+ +.+...+...+++.|++|+|+|++++++.+...++|..++|.+++.+  
T Consensus        97 ~~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  172 (434)
T PRK11663         97 ATGIINILFGFSSS---LWAFALLWVLNAF-FQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL  172 (434)
T ss_pred             HHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998   8888999999998 55666688999999999999999999999999999999999888764  


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHH-Hhhhc
Q 018388          168 --STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI-CLLRS  244 (357)
Q Consensus       168 --~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  244 (357)
                        +||+.|++.+++.++..+...+.+||++++.+.+.+.+.        .++.++.   .++..+++.+.++.+ +...+
T Consensus       173 ~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  241 (434)
T PRK11663        173 HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEW--------RHDALEL---AQQQEGAGLSRKEILTKYVLL  241 (434)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccc--------ccccccc---chhccccCCChhhhHHHHHhc
Confidence              899999998877666555555667776543221100000        0000000   000000111222222 22445


Q ss_pred             ccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 018388          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL  310 (357)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  310 (357)
                      ++.++...+..++.........+++|.|+++.+|++..+.+...+...++..+++ ++.+++.||+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~-~~~g~l~dr~  306 (434)
T PRK11663        242 NPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGA-LVAGWGSDKL  306 (434)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH-HHHhhhHHHh
Confidence            7788887777777777777888899999987789999999999999999999988 8999999998

>PRK03699 putative transporter; Provisional

Probab=99.97  E-value=4.7e-29  Score=222.87  Aligned_cols=300  Identities=11%  Similarity=0.078  Sum_probs=226.2

Q ss_pred             chhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhh
Q 018388            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (357)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l   84 (357)
                      +++|..+...+..++.........+.+|.+.+        +++++..+.|++.+.+.++..++.++.|+++||+|||+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~--------~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~   75 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAE--------YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL   75 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            34555666677778887877888888888865        4566677889999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh
Q 018388           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (357)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  164 (357)
                      ..+.++..++..+..++++   ++.+++.|+++|+ +.+...+...+++.|.+|+|+|+++++..+....+|..++|.+.
T Consensus        76 ~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~G~-~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  151 (394)
T PRK03699         76 IFGFALMILAVAGLMFSHS---LALFSIAMFVLGV-VSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA  151 (394)
T ss_pred             HHHHHHHHHHHHHHHHcch---HHHHHHHHHHHHH-hhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988   8888999999999 66766678889999999999999999999888888888888776


Q ss_pred             HHh-----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHH
Q 018388          165 RFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (357)
Q Consensus       165 ~~l-----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (357)
                      +.+     +||+.|.+.+++.++..++.++  ++.|+.++++ +               +++    ++      ..++  
T Consensus       152 ~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~-~---------------~~~----~~------~~~~--  201 (394)
T PRK03699        152 AYLLARSIEWYWVYACIGLVYVAIFILTLF--SEFPALGKHA-P---------------KAD----KP------VAKE--  201 (394)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHh--cCCccccccC-c---------------ccc----Cc------cccc--
Confidence            653     7999999888776555443322  2222111110 0               000    00      0000  


Q ss_pred             HhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHH
Q 018388          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (357)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (357)
                         ..++.++...+..++....+.....++|.|+++.+|+++.+.+.+.+...++..+++ ++.+++.||+++|+.+...
T Consensus       202 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~l~~~  277 (394)
T PRK03699        202 ---KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGM-WIFSFIVRFFDLQRILTVL  277 (394)
T ss_pred             ---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHH-HHHHHHHHHhchhhHHHHH
Confidence               013455556666666666777888999999998889999999999999989888988 8889999999999988877


Q ss_pred             HHHHHHHHHHHHhcCcchHHHH-HHHHHHhhh
Q 018388          320 LFAACINMFICSISWSAWVPYA-TTAFSVLVV  350 (357)
Q Consensus       320 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~  350 (357)
                      ..+..+...++...++.+.... ....+++.+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  309 (394)
T PRK03699        278 AGLALVLMYLFVNTDDPSHLLYAILGLGFFSS  309 (394)
T ss_pred             HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence            7777666666655555443332 344454444

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.97  E-value=1.1e-28  Score=220.69  Aligned_cols=287  Identities=16%  Similarity=0.150  Sum_probs=225.2

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      |.+.......+....+.....+.+|.+.++        ++.+..+.++..+.+.++..++.++.|+++||+|||+.+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--------~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~   74 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAAD--------LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPG   74 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHH
Confidence            345566777778888888888999998764        355566789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      .+...++..++..+++   .+.+++.|+++|+ +.+...+...+++.|.+|+|+|+++++..+....+|..++|.+++.+
T Consensus        75 ~~~~~i~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l  150 (392)
T PRK10473         75 AALFIIASLLCSLAET---SSLFLAGRFLQGI-GAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI  150 (392)
T ss_pred             HHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988   8888999999999 76777788999999999999999999999999999999999888764


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhh
Q 018388          168 ----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (357)
Q Consensus       168 ----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (357)
                          +||+.|++.+.+..+..++..+.+||++++++++                          ..+   ..++..+ ..
T Consensus       151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------------------------~~~---~~~~~~~-~~  200 (392)
T PRK10473        151 MLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPA--------------------------ASS---KPRENSE-SL  200 (392)
T ss_pred             HhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCC--------------------------ccc---hHHHHHH-HH
Confidence                8999999988887777666666677764322110                          000   0112122 23


Q ss_pred             cccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHH
Q 018388          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (357)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (357)
                      ++++++...+...+..........+.|.+.++.+|+++.+.+...+..++..+++. +..+++.||+++|+.+..+..+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~-~~~~~l~~r~g~~~~~~~~~~~~  279 (392)
T PRK10473        201 LNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVS-FSTPFALGIFKPRTLMLTSQVLF  279 (392)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHH
Confidence            35555554444444444444556667888888889999999999999999999988 88899999999999999888888


Q ss_pred             HHHHHHHHhcCcch
Q 018388          324 CINMFICSISWSAW  337 (357)
Q Consensus       324 ~i~~~~~~~~~~~~  337 (357)
                      .++.+.+.+.++.+
T Consensus       280 ~~~~~~~~~~~~~~  293 (392)
T PRK10473        280 LAAGITLALSPSHA  293 (392)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777666654443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.97  E-value=1.4e-28  Score=219.72  Aligned_cols=301  Identities=14%  Similarity=0.110  Sum_probs=226.0

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHH
Q 018388           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (357)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~   90 (357)
                      .++....++...+.....|.+|.+.++       +.+.+..+.|++.+...+...+.+++.|+++||+|||+++..+.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~   85 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVD-------QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLM   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHH
Confidence            677788899999999999999998764       4567788899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh---
Q 018388           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---  167 (357)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l---  167 (357)
                      ..++.+.+.++++   ++.+++.|+++|+ +.+...+...+++.|.+|+|+|++++++.+...++|..+||.+++.+   
T Consensus        86 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~  161 (400)
T PRK11646         86 RAAGFATMAIAHE---PWLLWLSCILSGL-GGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY  161 (400)
T ss_pred             HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999888   8888999999999 66777788999999999999999999999999999999999999876   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccc
Q 018388          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (357)
Q Consensus       168 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (357)
                      +||+.|++.+...++..++..+..||.++++++                            .    +.++.++...++|+
T Consensus       162 g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------------------~----~~~~~~~~~~~~~~  209 (400)
T PRK11646        162 DFRLVCATGAVLFVLAAAFNAWLLPAYKLSTVR----------------------------T----PVREGMTRVLRDKR  209 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCcccccccc----------------------------h----hhHHHHHHHHcCch
Confidence            899999988877666555545555553211000                            0    01111222345676


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHH
Q 018388          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (357)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~  327 (357)
                      ++...+..+...........++|.|.++..+ ++.+.+.+.+..++..........++..||++.++.+..+..+.+++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  288 (400)
T PRK11646        210 FVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSM  288 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            6655544444443334456778999988744 777888888887777666563454445556776666777777777777


Q ss_pred             HHHHhcCcchHHHH-HHHHHHhhhccccc
Q 018388          328 FICSISWSAWVPYA-TTAFSVLVVFATPS  355 (357)
Q Consensus       328 ~~~~~~~~~~~~~~-~~~~~~~~~~~~p~  355 (357)
                      .++...++.+.... ..+++.+.+...|.
T Consensus       289 ~~l~~~~~~~~~~~~~~l~~~g~~~~~p~  317 (400)
T PRK11646        289 FPIGMVSNLQQLFTLICLFYIGSIIAEPA  317 (400)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHcc
Confidence            77766666544433 34556666655554

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.97  E-value=4.1e-29  Score=222.92  Aligned_cols=281  Identities=11%  Similarity=0.025  Sum_probs=209.8

Q ss_pred             HhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccch
Q 018388           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (357)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~  104 (357)
                      ....|.+|.+.+        +++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.+.++++++ 
T Consensus        26 ~~~~~~lp~i~~--------~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~-   96 (393)
T PRK09705         26 TSVGPLLPQLRQ--------ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQ-   96 (393)
T ss_pred             hccchhHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcc-
Confidence            556688888865        45677788999999999999999999999999999999999999999999999999999 


Q ss_pred             hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-----hhHHHHHHHHHH
Q 018388          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIV  179 (357)
Q Consensus       105 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-----~~~~~f~~~~~~  179 (357)
                        ++.+++.|+++|+ +.+...+....++.|++| |+|+++++....+...|..+|+.+++++     +||+.+.+.++.
T Consensus        97 --~~~ll~~r~l~Gi-g~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~  172 (393)
T PRK09705         97 --SALLLSSALLGGV-GIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP  172 (393)
T ss_pred             --hHHHHHHHHHHHh-HHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence              8889999999999 777777888899999987 7899999999988888888887777653     799887766555


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHH
Q 018388          180 SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG  259 (357)
Q Consensus       180 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (357)
                      .++... .++...+++++++++                   +      +.+   . ++    ..++++.+...+..++..
T Consensus       173 ~~~~~~-~~~~~~~~~~~~~~~-------------------~------~~~---~-~~----~l~~~~~~~l~~~~~~~~  218 (393)
T PRK09705        173 AVVALF-AWWWQSAREVASSHK-------------------T------TTT---P-VR----VVFTPRAWTLGVYFGLIN  218 (393)
T ss_pred             HHHHHH-HHHHHhcCCCccccC-------------------C------CcC---C-cc----cccCHhHHHHHHHHHHHH
Confidence            433322 222222211110000                   0      000   0 11    123455666666666667


Q ss_pred             HhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCcchHH
Q 018388          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVP  339 (357)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  339 (357)
                      ..+....+++|.|+++ +|.+..+.+...+..+++.++++ +..+++.||+++|+.+..+..+..++...+...+.....
T Consensus       219 ~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~-~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  296 (393)
T PRK09705        219 GGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGA-LLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV  296 (393)
T ss_pred             HHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHH-HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH
Confidence            7777888999999988 59999999999999999999998 888999999999999888888777776655433322222


Q ss_pred             HHHHHHHHhhhcccc
Q 018388          340 YATTAFSVLVVFATP  354 (357)
Q Consensus       340 ~~~~~~~~~~~~~~p  354 (357)
                      ....+.+++.+...|
T Consensus       297 ~~~~l~g~g~g~~~~  311 (393)
T PRK09705        297 LWAMVCGLGLGGAFP  311 (393)
T ss_pred             HHHHHHHHhccchHH
Confidence            223344555554444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.97  E-value=7.5e-29  Score=222.36  Aligned_cols=301  Identities=13%  Similarity=0.128  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHH
Q 018388           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (357)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~   93 (357)
                      .+..+...++..+..|.+|.+.++        ++.+....++..+++.++..++++++|+++||+|||++++.+.++..+
T Consensus        22 ~~~~~~~~~~~~~~~p~l~~i~~~--------~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~   93 (413)
T PRK15403         22 ILYDFAAYLTTDLIQPGIINVVRD--------FNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL   93 (413)
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence            444455666778889999987653        455556778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hh
Q 018388           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----ST  169 (357)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~  169 (357)
                      +.+++.++++   ++.++++|+++|+ +.+...+....++.|.+|+|+|++++++......+|..+||.+++.+    +|
T Consensus        94 ~~~~~~~a~~---~~~l~~~r~l~Gi-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw  169 (413)
T PRK15403         94 ACAATLFTTS---MTQFLIARFIQGT-SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHW  169 (413)
T ss_pred             HHHHHHHcCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            9999999999   8899999999999 55665667788899999999999999999999999999999988764    89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchH
Q 018388          170 TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS  249 (357)
Q Consensus       170 ~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (357)
                      |+.|++.+++.++..+..++.+||++++++++                           .+.....++ .+...+||.++
T Consensus       170 ~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~---------------------------~~~~~~~~~-~~~ll~~~~~~  221 (413)
T PRK15403        170 KVLFAIIAVMGLIAFVGLLLAMPETVKRGAVP---------------------------FSAKSVLRD-FRNVFRNRLFL  221 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCccccCCC---------------------------CChHHHHHH-HHHHHcCHHHH
Confidence            99999998887776666566678764321110                           001112233 23345688888


Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHH
Q 018388          250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFI  329 (357)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  329 (357)
                      ...+..++..........+.|.++++.+|.++.+.++.......+..++. .+.+++.+|..+++.......+..++..+
T Consensus       222 ~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~~~~~~~~ig~~l  300 (413)
T PRK15403        222 TGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVAN-AIVARFVKDPTEPRFIWRAVPIQLVGLAL  300 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence            88888777777777778888999999989999999998877777777777 55566554433333332222222233222


Q ss_pred             HH----hcCcchH-HHH-HHHHHHhhhccccc
Q 018388          330 CS----ISWSAWV-PYA-TTAFSVLVVFATPS  355 (357)
Q Consensus       330 ~~----~~~~~~~-~~~-~~~~~~~~~~~~p~  355 (357)
                      +.    ..++.+. .+. ..++++|.+...|.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~  332 (413)
T PRK15403        301 LIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPT  332 (413)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHHhHH
Confidence            21    1233322 222 44566776666554

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.97  E-value=6.2e-29  Score=221.21  Aligned_cols=279  Identities=15%  Similarity=0.115  Sum_probs=213.5

Q ss_pred             ccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcch
Q 018388            3 MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA   82 (357)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~   82 (357)
                      |++++++++.+....++..++.....|.+|.+.++        .+.+..+.|++.+.+.++..+++++.|+++||+|||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--------~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~   72 (381)
T PRK03633          1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQ--------EHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR   72 (381)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            56778889999999999999999999999999874        4556678899999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHh
Q 018388           83 MLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (357)
Q Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (357)
                      .+..+.++..++..+++++++   ++.+++.|+++|+ +.+...+...+.+.|..++++|+++++......++|..+||.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  148 (381)
T PRK03633         73 SYYLASLIFAAGCAGLGLMVG---FWSWLAWRFVAGI-GCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQL  148 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999   8899999999999 667777788888888899999999999999999999999999


Q ss_pred             hhHHhhh---HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHH
Q 018388          163 AARFLST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (357)
Q Consensus       163 ~~~~l~~---~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (357)
                      +++.+..   +...+..+......... .+ .+.++++++++                             +..+.++  
T Consensus       149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~-----------------------------~~~~~~~--  195 (381)
T PRK03633        149 LVSKVSTELMSVLPWVTGLVLAAILPL-LF-TRILNQQAENH-----------------------------DSTSIWP--  195 (381)
T ss_pred             HHhcccccccchHHHHHHHHHHHHHHH-HH-hcccCCCCCCC-----------------------------CCCCHHH--
Confidence            9987622   22233332222211111 11 12111110000                             0011122  


Q ss_pred             HhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHH
Q 018388          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (357)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (357)
                        ..++|..+......+..........+++|.|.++. |.++.+.+...+...+...+++ +..+++.||+++|+.+..+
T Consensus       196 --~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~~~~~~l~~~  271 (381)
T PRK03633        196 --MLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQ-GMSDASIGFWMALLVSAGILGQ-WPIGRLADRFGRLLVLRVQ  271 (381)
T ss_pred             --HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHcCcHHHHHHH
Confidence              22355555544444444455666778899999875 9999898999998888888988 7889999999999998888


Q ss_pred             HHHHHHHHHHH
Q 018388          320 LFAACINMFIC  330 (357)
Q Consensus       320 ~~~~~i~~~~~  330 (357)
                      .....++....
T Consensus       272 ~~~~~~~~~~~  282 (381)
T PRK03633        272 VFVVILGSIAM  282 (381)
T ss_pred             HHHHHHHHHHH
Confidence            77777765444

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=1.2e-28  Score=218.55  Aligned_cols=293  Identities=18%  Similarity=0.185  Sum_probs=216.8

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      .++..++..++...+.....|..|.+.++       +++++..+.|++.+++.++..++.++.|+++||+|||+.+..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   74 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKD-------DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL   74 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHH-------HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            34567778888888888899999975543       55677788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcc-chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH-
Q 018388           89 TLSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (357)
Q Consensus        89 ~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~-  166 (357)
                      ++..++.+++.+++ +   ++.+++.|+++|+ +.+.. +...+++.|++|+|+|++++++......+|..+++.+++. 
T Consensus        75 ~~~~i~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886        75 LLLAIPCLWAGLAVQS---YSVLLLLRLFIGI-AGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             HHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-hchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            99999999999998 8   8888999999999 54544 5678999999999999999999987777776666555432 


Q ss_pred             -------------hhhHHHH-HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccc
Q 018388          167 -------------LSTTSAF-QAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (357)
Q Consensus       167 -------------l~~~~~f-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (357)
                                   .+||+.| +..+++..+..++.....+|++++++++.+.           +.++..    ..  .++
T Consensus       150 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~----~~--~~~  212 (366)
T TIGR00886       150 IGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKL-----------SFKGAR----WS--VGT  212 (366)
T ss_pred             HHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhc-----------cccccc----cc--ccc
Confidence                         2699998 4445554444445455566654332211000           000000    00  001


Q ss_pred             hhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccch
Q 018388          233 PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE  312 (357)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  312 (357)
                      +..++..+ ..++|+++...+..++..........+.|.|+++.+|+++.+.+.+.....+...+++ ++.+++.||+++
T Consensus       213 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~g~  290 (366)
T TIGR00886       213 GALGDQLK-VFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLAR-PLGGAISDRLGG  290 (366)
T ss_pred             hhHHHHHH-HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHh-hccchHHHhhcc
Confidence            11122233 3346777777777777767777888999999999899999999988888888888888 888999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHh
Q 018388          313 AKLLSLGLFAACINMFICSI  332 (357)
Q Consensus       313 ~~~~~~~~~~~~i~~~~~~~  332 (357)
                      |+.+..+......+..++.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~  310 (366)
T TIGR00886       291 ARKLLMSFLGVAMGAFLVVL  310 (366)
T ss_pred             chhHHHHHHHHHHHHHHHHh
Confidence            88877777666666555444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.97  E-value=2.1e-29  Score=229.93  Aligned_cols=291  Identities=12%  Similarity=0.057  Sum_probs=213.8

Q ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHH
Q 018388           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (357)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~   91 (357)
                      ...+..++..++.....+..|.+.+        +++++..+.|++.+.+.+++.++.++.|+++||+|||+++..+.++.
T Consensus        33 ~~~~~~~~~y~~r~~~~~~~~~i~~--------~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~  104 (467)
T PRK09556         33 VVFIGYLTMYLIRKNFKAAQNDMIS--------TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS  104 (467)
T ss_pred             HHHHHHHHHHHHhcChhhhhHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence            3344445555566777778888765        45667788899999999999999999999999999999999888887


Q ss_pred             HHHHHHHHH-----ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           92 IIPLAILAY-----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        92 ~~~~~~~~~-----~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      ++.....+.     +++   ++.+++.|+++|+ +.+...|...+++.|++|+++|++++++.+...++|..+++.++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~  180 (467)
T PRK09556        105 AICMLGFGASLGSGSVS---LGLMIALWALSGF-FQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALW  180 (467)
T ss_pred             HHHHHHHHHHHhcccch---HHHHHHHHHHHHH-HHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHH
Confidence            777666554     467   8899999999999 6666678899999999999999999999999999999999877653


Q ss_pred             h-------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHH-H
Q 018388          167 L-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD-L  238 (357)
Q Consensus       167 l-------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  238 (357)
                      +       +||..|.+.+++.++..++.++..++++++.+...+ ++..    ++..  .+++  ++.+ +++.+.++ .
T Consensus       181 ~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~-~~~~----~~~~--~~~~--~~~~-~~~~~~~~~~  250 (467)
T PRK09556        181 GANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKA-EEIF----GEPI--SEED--KETE-STDMTKWQIF  250 (467)
T ss_pred             HHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCCh-hhcc----cCcc--chhh--hccc-cccCcHHHHH
Confidence            2       488888887777666666656666665543221111 0000    0000  0000  0000 00111122 1


Q ss_pred             HHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHH
Q 018388          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSL  318 (357)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  318 (357)
                      .+...++|.++...+..++......+...++|.|+++.+|++..+.+...+...++..++. ++.|++.||+++|+....
T Consensus       251 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~g~r~~~~~  329 (467)
T PRK09556        251 VEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGS-LLWGWLSDLANGRRALVA  329 (467)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCchHHH
Confidence            2224568889988888888888888889999999998889999999999888888888888 899999999998887665


Q ss_pred             HHHHHHH
Q 018388          319 GLFAACI  325 (357)
Q Consensus       319 ~~~~~~i  325 (357)
                      ......+
T Consensus       330 ~~~~~~~  336 (467)
T PRK09556        330 CIALALI  336 (467)
T ss_pred             HHHHHHH
Confidence            5444333

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.97  E-value=1.5e-28  Score=218.48  Aligned_cols=295  Identities=15%  Similarity=0.142  Sum_probs=216.6

Q ss_pred             HHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH-HHHHHH
Q 018388           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL-PLTLSI   92 (357)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~-~~~~~~   92 (357)
                      .+..++..++.++..|.+|.+.++       +++.+..+.|++.+.+.+...+.+++.|+++||+||||.++. +.+...
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~-------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~   75 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSE-------EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAA   75 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHc-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            456788889999999999998754       456677889999999999999999999999999999987654 556666


Q ss_pred             HHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHH--HHHHHHHHHHHHHhhHhhhHHh---
Q 018388           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASA--FGILLGVLSASFVCGTLAARFL---  167 (357)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~~g~~~~~~l---  167 (357)
                      ++..++.++++   ++.+++.|++.|. ..+...|...++..|..|+++|++.  .+......++|..+||.+++.+   
T Consensus        76 ~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~  151 (375)
T TIGR00899        76 LACLLFAWNRN---YFLLLVLGVLLSS-FASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG  151 (375)
T ss_pred             HHHHHHHhcch---HHHHHHHHHHHHh-hhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh
Confidence            77788888888   8888889999887 5566678888899998887777654  5777888889999999888765   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhccc
Q 018388          168 -STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV  246 (357)
Q Consensus       168 -~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (357)
                       +||+.|++.+++.++..+..++.+||++++++++                            +++.+.++    .++++
T Consensus       152 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~----~~~~~  199 (375)
T TIGR00899       152 FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA----------------------------LTRLEVRG----LLASR  199 (375)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc----------------------------cCcchhhh----hhcCc
Confidence             8999999998887777666666688765432211                            00001111    23456


Q ss_pred             chHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHH
Q 018388          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (357)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~  326 (357)
                      +++......++..........++|.|+++.+|.++.+.+...........++. ++.+++.||+++|+.+..+.....+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~  278 (375)
T TIGR00899       200 DTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFM-LLAGYLIKRFGKRRLMLLAALAGVAF  278 (375)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchhHHHHHHHHHHHH
Confidence            66655555555555555567778999888889999998888777766666666 78899999999999888777766665


Q ss_pred             HHHHHhcCcchHHHH-HHHHHHhhhcc
Q 018388          327 MFICSISWSAWVPYA-TTAFSVLVVFA  352 (357)
Q Consensus       327 ~~~~~~~~~~~~~~~-~~~~~~~~~~~  352 (357)
                      ...+.+.++.+..+. ..+.+++.+..
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~g~~~g~~  305 (375)
T TIGR00899       279 YTGLAADNSLWALLMLQLLNAIFIGIL  305 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555444433 23334444443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.97  E-value=6.5e-29  Score=223.15  Aligned_cols=300  Identities=14%  Similarity=0.169  Sum_probs=215.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.+...++..+.+.++.....+..|.+.+        +++.+..+.|++.+++.++..+++++.|+++||+|||+++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   82 (405)
T TIGR00891        11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAG--------EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVT   82 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            455677888999999999999999998865        345666778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      +.++..++.+++.++++   ++.+++.|++.|+ +.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  158 (405)
T TIGR00891        83 SIVLFSAGTLACGFAPG---YITMFIARLVIGI-GMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL  158 (405)
T ss_pred             HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHh-hhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   8889999999999 6677778999999999999999999999999999999999988776


Q ss_pred             h----h--hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHH
Q 018388          167 L----S--TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (357)
Q Consensus       167 l----~--~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (357)
                      +    +  ||+.|++.++..++. ++.....||+++.++++++.+..    .+..++..++++..+.  ..++......+
T Consensus       159 l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~  231 (405)
T TIGR00891       159 VVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAEDWKEKHAGKALV----RTMVDILYGGEHRIAN--IVMTLAAAMVQ  231 (405)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHhhhhhhh----hhHHHHHhccchhhhh--hhhhhhHHhhh
Confidence            4    4  999998876554443 33445567765432221110000    0000000000000000  00000011111


Q ss_pred             hhhcccc-hHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHH
Q 018388          241 LLRSSVT-LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (357)
Q Consensus       241 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (357)
                      ...+++. +........+..........++|.|+++.+|++..+.+.+.+...++..++. ++.+++.||+++|+.+..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~g~~~~~~~~  310 (405)
T TIGR00891       232 SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGG-CVFGFLGDWLGRRKAYVCS  310 (405)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCchhhhHHH
Confidence            1111111 2222333333344445667788999988889999999999999999999988 8889999999999988877


Q ss_pred             HHHHHHH
Q 018388          320 LFAACIN  326 (357)
Q Consensus       320 ~~~~~i~  326 (357)
                      .....+.
T Consensus       311 ~~~~~~~  317 (405)
T TIGR00891       311 LLAGQLL  317 (405)
T ss_pred             HHHHHHH
Confidence            7665333

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.97  E-value=3.1e-29  Score=224.38  Aligned_cols=275  Identities=16%  Similarity=0.135  Sum_probs=211.8

Q ss_pred             HHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHH
Q 018388           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (357)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~   97 (357)
                      ++..++.....+..|.+.+        +++.+..+.|++.+++.++..++.++.|+++||+|||+++..+.++..++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~   75 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQE--------DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGL   75 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHH--------hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHH
Confidence            3455566666677777654        44566678899999999999999999999999999999999999999999999


Q ss_pred             HHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHH
Q 018388           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAF  173 (357)
Q Consensus        98 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f  173 (357)
                      ++++++   ++.+++.|++.|+ +.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+    +||+.|
T Consensus        76 ~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  151 (399)
T TIGR00893        76 QAFAGA---YVSLYILRVLLGA-AEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAF  151 (399)
T ss_pred             HHHHcC---HHHHHHHHHHHHH-HHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHH
Confidence            999998   8999999999999 67777889999999999999999999999999999999999988864    899999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHH
Q 018388          174 QAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAV  253 (357)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (357)
                      ++.+++.++..+...+..||++++++...+.++....  +..   ..+.+.++++.+.....+    ...++|+++...+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  222 (399)
T TIGR00893       152 IIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVV--GGL---LAEQQGKGPSTPKKYQIK----ELLKDRRVWGLAL  222 (399)
T ss_pred             HHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcc--hhh---ccccccccccCCCccchH----HHhcCHHHHHHHH
Confidence            9988887776666666667655432221110000000  000   000000001111111222    2445788888888


Q ss_pred             HHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhH
Q 018388          254 VAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (357)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (357)
                      ..++..........+.|.|+++.+|.++.+.+.......+...++. ++.+++.||+++|+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~  282 (399)
T TIGR00893       223 GQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGM-ILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Confidence            8888888888899999999998889999999999999999998988 88899999999885

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.97  E-value=4.6e-28  Score=213.10  Aligned_cols=270  Identities=12%  Similarity=0.031  Sum_probs=196.0

Q ss_pred             HHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHH
Q 018388           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA   99 (357)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~   99 (357)
                      +......+.|.+|.+.+        +++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.....
T Consensus         3 ~~~~~~~~~~~lp~i~~--------~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~   74 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAE--------DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLL   74 (368)
T ss_pred             hhHHHHHHHhhHHHHHH--------HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence            44566777889999876        4566678889999999999999999999999999999887665555544433233


Q ss_pred             HccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHH
Q 018388          100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQA  175 (357)
Q Consensus       100 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~  175 (357)
                      ..++   ++.+++.|+++|+ +.+.. +.....++|++|+|+|++++++.+.+..+|..+++.+++.+    +||+.|++
T Consensus        75 ~~~~---~~~l~~~R~l~G~-g~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~  149 (368)
T TIGR00903        75 DPFN---YEWLLACQLLAAL-GQPFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP  149 (368)
T ss_pred             Hhcc---HHHHHHHHHHHHh-HhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            3367   8899999999999 66654 56667779999999999999999999999999999888876    99999999


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHH
Q 018388          176 ATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVA  255 (357)
Q Consensus       176 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (357)
                      .++++++..++.++.+||++++++++                       .+ .   .+..++ ++.+.++|.++...+..
T Consensus       150 ~~~l~~~~~~~~~~~lp~~p~~~~~~-----------------------~~-~---~~~~~~-~~~ll~~~~~~~~~~~~  201 (368)
T TIGR00903       150 IAAVAAAGIILVLAALPALPFQAAEG-----------------------FG-F---KDAVKE-FGALAGRKDLWIIGAIL  201 (368)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCC-----------------------cc-h---HHHHHH-HHHHHcChhHHHHHHHH
Confidence            88887777777777889876542210                       00 0   001122 22345689999999999


Q ss_pred             HHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccch---hHH-HHHHHHHHHHHHHHHH
Q 018388          256 FFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE---AKL-LSLGLFAACINMFICS  331 (357)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-~~~~~~~~~i~~~~~~  331 (357)
                      ++.........+|+|.|+++. |++.. .+.........+.++.    +++.||..|   |+. ........++....+.
T Consensus       202 ~~~~~~~~~~~~wlp~~L~~~-g~s~~-~~~~~~l~~~~g~~g~----~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~  275 (368)
T TIGR00903       202 GFGVALFDNLAIWLEAALRPA-GLEDI-AGDAVALAILAGLIGV----AVIPDRVARAGLRSIYIRAAALLIAAFFLALA  275 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCChH-HHHHHHHHHHHHHHHH----HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999874 78764 4666555555555544    566666543   333 3223444444444444


Q ss_pred             hcCcc
Q 018388          332 ISWSA  336 (357)
Q Consensus       332 ~~~~~  336 (357)
                      +..+.
T Consensus       276 ~~~~~  280 (368)
T TIGR00903       276 FELNR  280 (368)
T ss_pred             Hcccc
Confidence            44443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.97  E-value=5.3e-28  Score=221.74  Aligned_cols=295  Identities=15%  Similarity=0.109  Sum_probs=204.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.+....++.+++.++..++....|.+.++.. ++.++. .+....-.+.++..++..+++++.|+++||+|||+++..
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~-~~~~~~-~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFF-PGADPS-VQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            345566678999999999998888887766532 222221 111111113577889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHH-----HHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhH
Q 018388           87 PLTLSIIPLAILAYRRSISFF-----YAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  161 (357)
                      +.++.+++++++++++++..+     ..++++|+++|+ +.|...+...++++|++|+|+|++..++...+..+|..+|+
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~-g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~  171 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGF-SVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGA  171 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh-HhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999994321     247899999999 77888899999999999999999999999988888888776


Q ss_pred             hhhH------------HhhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCcccc
Q 018388          162 LAAR------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVC  229 (357)
Q Consensus       162 ~~~~------------~l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (357)
                      .+..            ..|||++|++.+++.++ .++....+||+++..+.+++.+          +.+++  ..   .+
T Consensus       172 ~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~----------~~~~~--~~---~~  235 (490)
T PRK10642        172 GVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLE----------QGDRE--GL---QD  235 (490)
T ss_pred             HHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhh----------hhccc--cc---cc
Confidence            5432            24899999998765444 3334556788765322110000          00000  00   00


Q ss_pred             ccchhHHHHHHhhhccc-chHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018388          230 KKIPSIRDLICLLRSSV-TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP  308 (357)
Q Consensus       230 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  308 (357)
                      ++..++++..   ++++ .+.......++....++....++|.|+++.+|++..+.+.......++..++. ++.+++.|
T Consensus       236 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d  311 (490)
T PRK10642        236 GPKVSFKEIA---TKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQ-PVMGLLSD  311 (490)
T ss_pred             cccCCHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            1111333322   2222 22222333344556677788899999988789988877777777777777777 78899999


Q ss_pred             ccchhHHHHHHHHHHH
Q 018388          309 ILGEAKLLSLGLFAAC  324 (357)
Q Consensus       309 ~~~~~~~~~~~~~~~~  324 (357)
                      |+|||+.+..+.....
T Consensus       312 r~grr~~~~~~~~~~~  327 (490)
T PRK10642        312 RFGRRPFVILGSVALF  327 (490)
T ss_pred             HhccHHHHHHHHHHHH
Confidence            9999998877765433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.97  E-value=1.4e-27  Score=214.83  Aligned_cols=311  Identities=18%  Similarity=0.193  Sum_probs=227.5

Q ss_pred             chhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhh
Q 018388            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (357)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l   84 (357)
                      +|++++..+++..++...+.....|.+|.+.++.   +.++.+....+.|++.+++.++..++.+++|+++||+|||+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~   87 (408)
T PRK09874         11 NWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQL---GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML   87 (408)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh---CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH
Confidence            4677788888999999999999999999998762   1222222234569999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh
Q 018388           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (357)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  164 (357)
                      ..+.+...++..++.++++   ++.+++.|++.|+ +.+. .+....++.|..|+|+|++++++......+|..++|.++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  162 (408)
T PRK09874         88 LRSALGMGIVMVLMGLAQN---IWQFLILRALLGL-LGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAG  162 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-hhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888888   8889999999998 5454 477888999999999999999999999999999999888


Q ss_pred             HHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHH
Q 018388          165 RFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (357)
Q Consensus       165 ~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (357)
                      +.+    +||+.|++.+++.++..+...+..||++++.+++                             +..+.++..+
T Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~  213 (408)
T PRK09874        163 GLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK-----------------------------EMLHMREVVT  213 (408)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch-----------------------------hhhHHHHHHH
Confidence            764    8999999988887766666666677654222110                             0011223333


Q ss_pred             hhhcccchHH-HHHHHHHHHHhhhhhhHHHHHhhhhhcccCcc---hHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHH
Q 018388          241 LLRSSVTLSQ-AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN---QFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (357)
Q Consensus       241 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (357)
                      .++ +++.+. .....+...........+++.|..+..+....   ..+.+....+++..++. ...+++.||+++|+.+
T Consensus       214 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~-~~~g~l~dr~g~~~~~  291 (408)
T PRK09874        214 SLK-NPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSA-PRLGKLGDRIGPEKIL  291 (408)
T ss_pred             hCc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchhH
Confidence            343 444433 33434444455556677788888876332221   13445555666667777 7779999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcchHHHH-HHHHHHhhhcccc
Q 018388          317 SLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       317 ~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p  354 (357)
                      ..+.....++.+...+.++.+..+. ..+.+++.+...|
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  330 (408)
T PRK09874        292 ITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLP  330 (408)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHH
Confidence            8888887777766666665555444 3455666665554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.97  E-value=8.9e-28  Score=214.67  Aligned_cols=308  Identities=15%  Similarity=0.102  Sum_probs=231.1

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      .+..+....++..+..++..|.+|.+.+        +++.+..+.|++.+.+.+++.+++++.|++.||+|||+.+..+.
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~--------~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~   75 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQ--------AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGL   75 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            4566777778888888899999999865        45666788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-
Q 018388           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (357)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-  167 (357)
                      ++.+++..++..+.....++.+++.|++.|+ +.+...+....++.+..|+|+|++.+++.+...++|..+||.+++.+ 
T Consensus        76 ~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        76 FLYALGAFLFWPAAEIMNYTLFLVGLFILTA-GLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHh-hHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998886544211128889999999999 77888889999999999999999999999999999999998887644 


Q ss_pred             -----------------------------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccC
Q 018388          168 -----------------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQN  218 (357)
Q Consensus       168 -----------------------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  218 (357)
                                                   +||++|++.+++.++..+... +.++++.+++++                 
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~-----------------  216 (410)
T TIGR00885       155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDA-----------------  216 (410)
T ss_pred             hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcccc-----------------
Confidence                                         499999988887665544332 222211111000                 


Q ss_pred             CCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhc-ccCcchHHHHHHHHHHHHHH
Q 018388          219 ESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF-HFNKNQFADLMLIAGLAGTI  297 (357)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~  297 (357)
                            .  +.+..++.+    .+.|+|.++...+..+++...+....++++.|.++.. +.+....+...+.......+
T Consensus       217 ------~--~~~~~~~~~----~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~v  284 (410)
T TIGR00885       217 ------K--QISFSASLS----RLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFI  284 (410)
T ss_pred             ------c--cccchhhHH----HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Confidence                  0  000011112    2445777888788888888888788899999987642 33334445555666666778


Q ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhcccccC
Q 018388          298 SQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSV  356 (357)
Q Consensus       298 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  356 (357)
                      ++ ++.+++.||+++|+.+.+......+..++..+.++....+...+.++..+..+|++
T Consensus       285 GR-~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i  342 (410)
T TIGR00885       285 SR-FIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTI  342 (410)
T ss_pred             HH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence            88 89999999999999998888888888877777666555555666677777766653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.97  E-value=7.3e-28  Score=217.76  Aligned_cols=292  Identities=13%  Similarity=0.126  Sum_probs=212.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.+...++..+.+.++.....+..|.+.+        +++++..+.+++.+++.++..+++++.|+++||+|||+++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~   88 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKA--------DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMW   88 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            445667778888888888888888888765        445566778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      +.++.+++..+++++++   ++.++++|+++|+ +.+...+....++.|++|+|+|++++++...+.++|.+++|.+.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307         89 SIVAYSVGTGLSGLASG---VIMLTLSRFIVGM-GMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999   8999999999999 6677778899999999999999999999999999999999887765


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhh
Q 018388          167 L----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (357)
Q Consensus       167 l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (357)
                      +    +||+.|++..... +..+......||+++.++++.+             .+ ++  ..+.  .......+ .+.+
T Consensus       165 l~~~~~w~~~f~i~~~~~-~~~~~~~~~~p~~~~~~~~~~~-------------~~-~~--~~~~--~~~~~~~~-~~~~  224 (426)
T PRK12307        165 FAEAYGWRAAFFVGLLPV-LLVIYIRARAPESKEWEEAKLS-------------GK-GK--HSQS--AWSVFSLS-MKGL  224 (426)
T ss_pred             HcccCCHHHHHHHHHHHH-HHHHHHHHHCCCChHHHHhhhh-------------cc-cc--cccc--chhhhhHH-HHHH
Confidence            3    8999998764432 2222222223443221111000             00 00  0000  00000011 2223


Q ss_pred             hcccchHHHHHHHH---HHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHH
Q 018388          243 RSSVTLSQAAVVAF---FSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (357)
Q Consensus       243 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (357)
                      .+++.++.......   ...........++|.|+++. |.++.+.+...+...++..+++ ++.+++.||+++|+.+..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~~~~~~  302 (426)
T PRK12307        225 FNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGN-IVWGLCADRIGLKKTFSIG  302 (426)
T ss_pred             HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHH
Confidence            44555544333222   22223334577889999885 9999888998898889988888 8889999999999998888


Q ss_pred             HHHHHHHHHHHHh
Q 018388          320 LFAACINMFICSI  332 (357)
Q Consensus       320 ~~~~~i~~~~~~~  332 (357)
                      ..+..+..+.+..
T Consensus       303 ~~~~~~~~~~~~~  315 (426)
T PRK12307        303 LLMSFLFIFPLFR  315 (426)
T ss_pred             HHHHHHHHHHHHH
Confidence            8777666554443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=1.2e-27  Score=216.35  Aligned_cols=279  Identities=11%  Similarity=0.024  Sum_probs=200.5

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      +....++.+++.++...+....|.+.++....+.++  .+..+.+.+.+...++..++++++|+++||+|||+++..+.+
T Consensus        24 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~  101 (432)
T PRK10406         24 IVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTT--TQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVC  101 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            334456688889999887777777766532111121  222234555566677777999999999999999999999999


Q ss_pred             HHHHHHHHHHHccchhH-----HHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh
Q 018388           90 LSIIPLAILAYRRSISF-----FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (357)
Q Consensus        90 ~~~~~~~~~~~~~~~~~-----~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  164 (357)
                      +.+++++++++++++.+     ...+++.|+++|+ +.|...+...+++.|+.|+|+|++..+..+.....|..+++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~  180 (432)
T PRK10406        102 MMCFGSLVIACLPGYETIGTWAPALLLLARLFQGL-SVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVV  180 (432)
T ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHh-hhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988421     2468899999999 77888899999999999999999999998888888877776543


Q ss_pred             H------------HhhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccc
Q 018388          165 R------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (357)
Q Consensus       165 ~------------~l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (357)
                      .            ..+||++|++.+++.++. +.....+||+++.++++                           .++.
T Consensus       181 ~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~~~~~~---------------------------~~~~  232 (432)
T PRK10406        181 VVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQQETRA---------------------------LKEA  232 (432)
T ss_pred             HHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCchHHHhh---------------------------hccc
Confidence            2            248999999887765543 33334455543321110                           0001


Q ss_pred             hhHHHHHHhhhcccchHHHHHHHHH-HHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 018388          233 PSIRDLICLLRSSVTLSQAAVVAFF-SGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG  311 (357)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  311 (357)
                      .++++    ++++++.+...+..++ .........+|+|.|+++.+|.+..+.+...........+++ .+.|++.||++
T Consensus       233 ~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~-~~~G~l~Dr~g  307 (432)
T PRK10406        233 GSLKG----LWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQ-PLIGALSDKIG  307 (432)
T ss_pred             ccHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcC
Confidence            12333    2345555554444433 355667788899999988889998888888888888888887 67799999999


Q ss_pred             hhHHHHHHHHHHH
Q 018388          312 EAKLLSLGLFAAC  324 (357)
Q Consensus       312 ~~~~~~~~~~~~~  324 (357)
                      ||+.+..+..+..
T Consensus       308 rr~~~~~~~~~~~  320 (432)
T PRK10406        308 RRTSMLCFGSLAA  320 (432)
T ss_pred             chHHHHHHHHHHH
Confidence            9988776655443

>TIGR00895 2A0115 benzoate transport

Probab=99.97  E-value=2e-28  Score=219.38  Aligned_cols=328  Identities=16%  Similarity=0.129  Sum_probs=220.5

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHH
Q 018388           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (357)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~   90 (357)
                      .......+...++.....+..|.+.+        +++.+..+.|++.+.+.++..++.++.|+++||+|||+.+..+.++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   91 (398)
T TIGR00895        20 ILSFLIMLMDGYDLAAMGFAAPAISA--------EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL   91 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHhh--------ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            33444555566666667777777764        3455667789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh---
Q 018388           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---  167 (357)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l---  167 (357)
                      ..++.++..++++   ++.+++.|++.|+ +.+...+...+++.|++|+++|++++++......+|..++|.+++.+   
T Consensus        92 ~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  167 (398)
T TIGR00895        92 FSVFTLLCALATN---VTQLLILRFLAGL-GLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV  167 (398)
T ss_pred             HHHHHHHHHHccc---hHHHHHHHHHHhc-ccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence            9999999999888   8888999999999 76777789999999999999999999999999999999999988775   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCc--ccccccccccccCCCCCCCCccccccchhHHHHHHhhhc
Q 018388          168 -STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTR--PIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (357)
Q Consensus       168 -~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (357)
                       +|++.|++.+++..+..++....+||+++...++++..  +..+...++...+.++  ..+++.++.+..++..+.+++
T Consensus       168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  245 (398)
T TIGR00895       168 FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQS--ALPEQKATQGTKRSVFKALFQ  245 (398)
T ss_pred             ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccc--cccccccccchhhHHHHHHhc
Confidence             89999998876666666666677788754322211100  0000000000000000  000000111112222222332


Q ss_pred             c---cchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHH
Q 018388          245 S---VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (357)
Q Consensus       245 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (357)
                      +   +......+..++..........+.|.+.+ .+|.++.+.+.......++..++. ++.+++.||+++|+.......
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~  323 (398)
T TIGR00895       246 GKTARITVLLWLLYFMLLVGVYFLTNWLPKLMV-ELGFSLSLAATGGALFNFGGVIGS-IIFGWLADRLGPRVTALLLLL  323 (398)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcchHHHHHHHHH
Confidence            2   23333444455555666667788885554 469999999999999999999988 888999999999855444443


Q ss_pred             HHHHHHHHHHhcCcchHHHH-HHHHHHhhhcccc
Q 018388          322 AACINMFICSISWSAWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       322 ~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p  354 (357)
                      .......+.....+.+..+. ..+.+++.+...|
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  357 (398)
T TIGR00895       324 GAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQS  357 (398)
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence            33333333332334433333 4455555554443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.97  E-value=9.5e-28  Score=214.72  Aligned_cols=269  Identities=15%  Similarity=0.103  Sum_probs=210.2

Q ss_pred             CCccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCc
Q 018388            1 MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR   80 (357)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Gr   80 (357)
                      |+.++.+|.+.......++..+......|.+|.+.+        +++.+..+.|++.+.+.++..++.++.|+++||+||
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~--------~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~gr   72 (394)
T PRK11652          1 MKRQRNVNLLFMLVLLVAVGQMAQTIYVPAIADMAR--------DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGR   72 (394)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCC
Confidence            444455666666677777777888888899998875        446667788999999999999999999999999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhh
Q 018388           81 KAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (357)
Q Consensus        81 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (357)
                      |+.+..+.....++...+.++++   ++.+++.|++.|+ +.+...+....+..|..++++|+++++..+.+..+|..+|
T Consensus        73 r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  148 (394)
T PRK11652         73 RPVILVGMSIFILGTLVALFAHS---LTVLIAASAIQGL-GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLA  148 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888   8889999999999 6666667888889999999999999999999999999999


Q ss_pred             HhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHH
Q 018388          161 TLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (357)
Q Consensus       161 ~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (357)
                      |.+++.+    +||+.|++.++...+..+...+..||+++.++++                            +   +.+
T Consensus       149 ~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~---~~~  197 (394)
T PRK11652        149 PLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADARR----------------------------T---RVL  197 (394)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccch----------------------------h---HHH
Confidence            9888764    8999999987776665555556677754322110                            0   112


Q ss_pred             HHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchh
Q 018388          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA  313 (357)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  313 (357)
                      +..+...++|.++...+..+.............+.+.++.+|.++.+.+.......++..+++ .+.+++.||.+++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~~~~~~  273 (394)
T PRK11652        198 ASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTL  273 (394)
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            223334557777766665555555556666777888888889999998988888877777777 7888999988743

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=6.9e-28  Score=220.61  Aligned_cols=311  Identities=13%  Similarity=0.070  Sum_probs=233.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.++.+.+..++..++.....+.+|.+.++        ++.+..+.|++.+.+.++..++.+++|+++||+|||++++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~   80 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQS--------LGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFT   80 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            4467788888899999999999999999864        45566777999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      +.++..++.+++.++++   ++.+++.|+++|+ +.+...+...+++.|.+|+++|+++.+......++|..+||.+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~  156 (471)
T PRK10504         81 AIVLFTLGSLFCALSGT---LNELLLARVLQGV-GGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL  156 (471)
T ss_pred             HHHHHHHHHHHHHHhCC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            99999999988888888   8888999999999 7777778999999999999999999999999999999999998887


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccccccc---------ccccccCCCCCCC---------
Q 018388          167 L----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEE---------TEGVNQNESNSPV---------  224 (357)
Q Consensus       167 l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~---------  224 (357)
                      +    +||+.|++......+..+......|+.+..+ ++.|..+.....         .++.+........         
T Consensus       157 l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (471)
T PRK10504        157 LVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQT-RRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGV  235 (471)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccC-CCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHH
Confidence            5    8999999988776666666555555543322 222322111000         0000000000000         


Q ss_pred             ------CccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHH
Q 018388          225 ------KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTIS  298 (357)
Q Consensus       225 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  298 (357)
                            ..++.+..++..+ .+ +++||.+....+..++..........+.|.|.++.+|.++.+.+.......+...++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~-~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~  313 (471)
T PRK10504        236 VALLLYLLHARNNNRALFS-LK-LFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGM  313 (471)
T ss_pred             HHHHHHHHHHhcCCCCccC-HH-HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence                  0000000011111 11 456888888888888888877777888999999878999999998888888777777


Q ss_pred             HHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhc
Q 018388          299 QLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS  333 (357)
Q Consensus       299 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  333 (357)
                      . .+.+++.||+++|+.+..+..+..+...++.+.
T Consensus       314 ~-~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~  347 (471)
T PRK10504        314 K-RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV  347 (471)
T ss_pred             H-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc
Confidence            7 778999999999999998888777776655553

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.97  E-value=4.7e-28  Score=215.36  Aligned_cols=270  Identities=14%  Similarity=0.102  Sum_probs=206.6

Q ss_pred             HHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccc
Q 018388           24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS  103 (357)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~  103 (357)
                      .....+..|.+.+        +++++..+.|++.+++.++..+++++.|+++||+|||+++..+.++..++.++++++++
T Consensus        19 ~~~~~~~~~~~~~--------~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~   90 (377)
T TIGR00890        19 VYTWTLLAPPLGR--------YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADS   90 (377)
T ss_pred             HhhhhhHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHH
Confidence            4445667777755        45667788899999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHH
Q 018388          104 ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIV  179 (357)
Q Consensus       104 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~  179 (357)
                         ++.+++.|++.|+ +.+...+.....+.|+.| |+|+++.+......++|..+++.+.+.+    +||+.|++.+++
T Consensus        91 ---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~  165 (377)
T TIGR00890        91 ---LAALYLTYGLASA-GVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII  165 (377)
T ss_pred             ---HHHHHHHHHHHhH-HHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence               8899999999999 667666777888888887 6799999999999999987655444432    799999999888


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHH
Q 018388          180 SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG  259 (357)
Q Consensus       180 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (357)
                      .++..+..++.+||++++++++++                       +..++..+.+    ...+++.++...+..+...
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  218 (377)
T TIGR00890       166 FLLVIVLGAFLIGYPPGQLIKTNI-----------------------EVSVKDYTVW----EMLRTPQFWVLYLSFFLNA  218 (377)
T ss_pred             HHHHHHHHHHheecCchhccccCc-----------------------ccchhhhhHH----HHHcCccHHHHHHHHHHHh
Confidence            777766666666654432211100                       0000001111    2345777777666666666


Q ss_pred             HhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCc
Q 018388          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWS  335 (357)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  335 (357)
                      ........+.+.|.++ +|.++.+.+...+...+...+++ ++.+++.||++||+.+..+.....++.+.+.+.++
T Consensus       219 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  292 (377)
T TIGR00890       219 VSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGR-PFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM  292 (377)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc
Confidence            5655566677777766 58888888898999999998988 88899999999999998888888888777666553

>PRK10054 putative transporter; Provisional

Probab=99.97  E-value=2.8e-28  Score=217.46  Aligned_cols=306  Identities=15%  Similarity=0.174  Sum_probs=232.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      +|.++.+.+..++...+.+...|.+|.+.++       +++.+..+.|++.+.+.++..+++++.|+++||+|||++++.
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~-------~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~   78 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSR-------QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLL   78 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHH
Confidence            5567788889999999999999999999865       456777888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      +.+...++.+...++++   ++.+++.|.+.|. +.+...+...++..|..|+|+|++++++.....++|..+||.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~  154 (395)
T PRK10054         79 AITAFASGFIAIPLVNN---VTLVVLFFALINC-AYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL  154 (395)
T ss_pred             HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988889888   7777888888887 5556667889999999999999999999999999999999999988


Q ss_pred             h---hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhh
Q 018388          167 L---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (357)
Q Consensus       167 l---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (357)
                      +   +|+.+|++.+++.++..+...+.+||++++++++                       +    ++  . .+. +...
T Consensus       155 l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-----------------------~----~~--~-~~~-~~~~  203 (395)
T PRK10054        155 LVMQSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-----------------------T----GS--V-WSP-SVLL  203 (395)
T ss_pred             HHHhccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-----------------------h----hh--h-hhh-hhhc
Confidence            6   7999999888776666555555566554322110                       0    00  0 111 2244


Q ss_pred             cccchHHHHHHHHHHHHhhhhhhHHHHHhhhhh--cccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHH
Q 018388          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (357)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (357)
                      ++|+++...+..++..........+.+.|..+.  .+.+....+.+...........+ ...+++.||.++|+.+..+..
T Consensus       204 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~  282 (395)
T PRK10054        204 QDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQ-YSVGRRLNAANIRPLMTAGTL  282 (395)
T ss_pred             cCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeeh-hHHHHHHccCCchhHHHHHHH
Confidence            577877777777776666666666777776433  24555566777777776666666 677899999999999988888


Q ss_pred             HHHHHHHHHHhcC-cchHHHH-HHHHHHhhhccccc
Q 018388          322 AACINMFICSISW-SAWVPYA-TTAFSVLVVFATPS  355 (357)
Q Consensus       322 ~~~i~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~p~  355 (357)
                      +..++...+.+.. +.+.... ..++++|.+...|+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~  318 (395)
T PRK10054        283 CFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPG  318 (395)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhh
Confidence            8888877666543 3333333 55667776655543

>PRK09952 shikimate transporter; Provisional

Probab=99.97  E-value=1.4e-27  Score=215.90  Aligned_cols=292  Identities=13%  Similarity=0.082  Sum_probs=200.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.+....+..+++.++......+.|.+..+...++.++. ..........++..++..+++++.|+++||+|||+++..
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~   99 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH
Confidence            4455666778889999998888777766554221122221 111111223355667788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhH-----HHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhH
Q 018388           87 PLTLSIIPLAILAYRRSISF-----FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  161 (357)
                      +.++.+++++++++++++..     .+.++++|+++|+ +.|...+....++.|+.|+|+|++..+..+.+..+|..+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~  178 (438)
T PRK09952        100 TVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGF-AVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST  178 (438)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHh-hhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999322     1158889999999 77877788999999999999999999999999999988886


Q ss_pred             hhhH------------HhhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCcccc
Q 018388          162 LAAR------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVC  229 (357)
Q Consensus       162 ~~~~------------~l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (357)
                      .+..            ..+||++|++.+++.++ .+......||+++..+++.+               .++      . 
T Consensus       179 ~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~~~~~~~~~---------------~~~------~-  235 (438)
T PRK09952        179 GLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESAEFEQQQHE---------------QAA------A-  235 (438)
T ss_pred             HHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHHhh---------------ccc------c-
Confidence            5543            24899999988776443 23333445665532211100               000      0 


Q ss_pred             ccchhHHHHHHhhhcccchHHHH-HHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018388          230 KKIPSIRDLICLLRSSVTLSQAA-VVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP  308 (357)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  308 (357)
                      +++.+..   +.++++++.+... ...++.....+...++.|.|.++.+|.+...........++...++. ++.|++.|
T Consensus       236 ~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~-~~~g~l~D  311 (438)
T PRK09952        236 KKRIPVI---EALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTI-PCFAWLAD  311 (438)
T ss_pred             cccCCHH---HHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            0001111   1133455444433 34445555666778899999988889888765555556666666766 78899999


Q ss_pred             ccchhHHHHHHHHHHHHHH
Q 018388          309 ILGEAKLLSLGLFAACINM  327 (357)
Q Consensus       309 ~~~~~~~~~~~~~~~~i~~  327 (357)
                      |++||+.+..+.++..++.
T Consensus       312 r~grr~~~~~~~~~~~~~~  330 (438)
T PRK09952        312 RFGRRRVYITGALIGTLSA  330 (438)
T ss_pred             HhCchHHHHHHHHHHHHHH
Confidence            9999998887766655543

>TIGR00897 2A0118 polyol permease family

Probab=99.97  E-value=2.5e-27  Score=212.31  Aligned_cols=272  Identities=11%  Similarity=0.111  Sum_probs=205.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh
Q 018388            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (357)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~   85 (357)
                      ++|.+....++.++...+.....+.+|.+.+|        .+.+..+.|++.+.+.++..+++++.|+++||+|||+++.
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~   82 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA--------LGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMM   82 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHH--------hCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            46788889999999999988888888888753        3556678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---Hc-cchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHH-Hhh
Q 018388           86 LPLTLSIIPLAILA---YR-RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF-VCG  160 (357)
Q Consensus        86 ~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g  160 (357)
                      .+..+..++.+++.   .. ++   ++.+++.|+++|+ +.+...+...+.+.|..|+|+|++++|+.+...++|. .+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~i~G~-g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g  158 (402)
T TIGR00897        83 IGLLLWCVGHAAFIVFGLGHAN---YPLILLFYGIRGL-GYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFG  158 (402)
T ss_pred             HHHHHHHHHHHHHHHHhccCcc---HHHHHHHHHHHHc-chHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888876553   22 45   7778899999999 6566667778888999999999999999999999996 578


Q ss_pred             HhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHH
Q 018388          161 TLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (357)
Q Consensus       161 ~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (357)
                      |.+++.+    +|+..++.......+..++..+..+|.+++++++                  +    +   ++ ..+.+
T Consensus       159 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~----~---~~-~~~~~  212 (402)
T TIGR00897       159 SYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ------------------T----R---EK-FSELG  212 (402)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc------------------C----C---cc-hhhHH
Confidence            8887763    6655555443333333333334444432211110                  0    0   00 01112


Q ss_pred             HHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHH
Q 018388          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (357)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (357)
                      +..+.++++|+++...+..++.........++.|.|.++ +|++..+.+.......++..++. +..+++.||+++|+.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~~  290 (402)
T TIGR00897       213 KAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFN-VIFGIVGDKLGWMNTV  290 (402)
T ss_pred             HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHhhcchhHH
Confidence            223345668888888777777777788888999999977 69999998888888888889988 8889999999988765


Q ss_pred             H
Q 018388          317 S  317 (357)
Q Consensus       317 ~  317 (357)
                      .
T Consensus       291 ~  291 (402)
T TIGR00897       291 R  291 (402)
T ss_pred             H
Confidence            3

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.97  E-value=8e-28  Score=215.62  Aligned_cols=301  Identities=11%  Similarity=0.101  Sum_probs=216.7

Q ss_pred             chhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhh
Q 018388            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (357)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l   84 (357)
                      |+++++..+.+..++..++.++..|.+|.+.++       +++.+..+.|++.+++.++..+++++.|+++||+|||+++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~-------~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l   84 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHD-------QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV   84 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH
Confidence            457788899999999999999999999998765       4566677889999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHcc---ch--hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHh
Q 018388           85 TLPLTLSIIPLAILAYRR---SI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC  159 (357)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (357)
                      ..+.++..++.+.+.++.   +.  ..++.+++.|+++|+ +.+...+...+++.|+.|+|+|++++++.+....+|..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  163 (399)
T PRK05122         85 VFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGI-GESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI  163 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHh-hHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH
Confidence            999998887766655432   11  125678999999999 777777888899999999999999999999999999999


Q ss_pred             hHhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhH
Q 018388          160 GTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSI  235 (357)
Q Consensus       160 g~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (357)
                      ||.+++.+    +|++.+++.+++..+..+. ....|+++   +++                            +++.+.
T Consensus       164 g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~----------------------------~~~~~~  211 (399)
T PRK05122        164 GAPLGVLLYHWGGLAGLGLLIMLLALLGLLL-ARPRPAVP---PVK----------------------------GERLPF  211 (399)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHH-HhcCCCCC---CCC----------------------------ccchhH
Confidence            99888765    7898887766554332221 11112111   100                            000011


Q ss_pred             HHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHH
Q 018388          236 RDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (357)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (357)
                      ++..+      +.+.......+..........++|.|.++. |++  +.+.......++..+++ +..+++.||+++|+.
T Consensus       212 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~  281 (399)
T PRK05122        212 RRVLG------RVWPYGMGLALASIGFGTIATFITLYYAAR-GWD--GAALALTLFGVAFVGAR-LLFGNLINRLGGLRV  281 (399)
T ss_pred             HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccc--cchHHHHHHHHHHHHHH-HHHHHHHHHhccHHH
Confidence            22111      111122223333445556677888888765 663  34666677777777877 788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcchHHHH-HHHHHHhhhccccc
Q 018388          316 LSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPS  355 (357)
Q Consensus       316 ~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~  355 (357)
                      +..+..+..++..++.+.++.+..+. ..+.+++.+...|.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~  322 (399)
T PRK05122        282 AIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPA  322 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHH
Confidence            88888888888777777666554443 34556666655543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.97  E-value=1.9e-27  Score=216.89  Aligned_cols=270  Identities=12%  Similarity=0.080  Sum_probs=196.8

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      +.+...+...+....+.....|.+|.+.+        +++++..+.|++.+.+.+++.++.++.|+++||+|||+++..+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~  107 (476)
T PLN00028         36 RAFHLSWISFFTCFVSTFAAAPLLPIIRD--------NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFL  107 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            34455566666777777777788887765        4456667789989999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH-
Q 018388           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (357)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~-  166 (357)
                      .++.+++.++.+++++   ++.+++.|++.|+ +.+.. +....+++|++|+++|++++++......+|..+++.+... 
T Consensus       108 ~~~~~~~~~~~~~~~s---~~~l~~~r~l~G~-~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i  182 (476)
T PLN00028        108 LMLTAPAVFCMSLVSS---ATGFIAVRFFIGF-SLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV  182 (476)
T ss_pred             HHHHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998   8888899999998 54544 3466788999999999999999887666666655433321 


Q ss_pred             ------------hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchh
Q 018388          167 ------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPS  234 (357)
Q Consensus       167 ------------l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (357)
                                  .+||+.|++.+++.++..+..+++.++.|+. +.+            +.+++.     +    .++.+
T Consensus       183 ~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~-~~~------------~~~~~~-----~----~~~~~  240 (476)
T PLN00028        183 FPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDG-NYR------------ELKKSG-----T----MPKDS  240 (476)
T ss_pred             HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCC-chh------------hHHhcC-----c----ccccc
Confidence                        3799999999888776665555443332221 100            000000     0    00001


Q ss_pred             HHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchh
Q 018388          235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA  313 (357)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  313 (357)
                      ..+.++...++++.+...+..+..........+++|.|+.+.+|++..+++.+.+...++..+++ ++.|+++||+++|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~~~r  318 (476)
T PLN00028        241 FSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFAR-PAGGYLSDVAARR  318 (476)
T ss_pred             HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHh
Confidence            11222223456777776666665555556677889999988889999999999999999999998 8999999999765

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.1e-27  Score=202.83  Aligned_cols=287  Identities=14%  Similarity=0.101  Sum_probs=241.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh
Q 018388            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (357)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~   85 (357)
                      .+|+++.-.....+.+....+..|+.+.+.        +++++|+.|.+++.++..+...+..++.|.+.||+|.|++..
T Consensus        12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~--------~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~   83 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIK--------SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI   83 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH
Confidence            356777777777777777777777777763        478899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHH----HhhH
Q 018388           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF----VCGT  161 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~----~~g~  161 (357)
                      ++.++..+.++..+++.+++.++++++.+++.|+ +++.+ +....++++++|+|++|.++|+.. ..++|.    .++|
T Consensus        84 ~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~-~GasF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P  160 (417)
T COG2223          84 LSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL-AGASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP  160 (417)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc-cccee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH
Confidence            9999999999999999876667899999999999 54554 789999999999999999999998 666664    5667


Q ss_pred             hhhHHhh---hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHH
Q 018388          162 LAARFLS---TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (357)
Q Consensus       162 ~~~~~l~---~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (357)
                      .+....+   |+....+..+..++..+..++...|.++.++..+                           +.. +  +.
T Consensus       161 ~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~---------------------------~~~-~--~~  210 (417)
T COG2223         161 LVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVK---------------------------PQL-P--AQ  210 (417)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcccc---------------------------ccc-h--hH
Confidence            7777777   9998888888877778888888887766433210                           000 1  22


Q ss_pred             HHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHH
Q 018388          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSL  318 (357)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  318 (357)
                      .+..+++++.|.+.+.++.....+.++..++|.|++++||.++.++|.........+.+.+ .++|+++||+|.++++..
T Consensus       211 ~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~R-p~GG~LsDR~Gg~rv~~~  289 (417)
T COG2223         211 LKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALAR-PLGGWLSDRIGGRRVTLA  289 (417)
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHH-hccchhhhhccchhHHHH
Confidence            3346679999999999999999999999999999999999999999999999999999999 899999999999999988


Q ss_pred             HHHHHHHHHHHHHhcC
Q 018388          319 GLFAACINMFICSISW  334 (357)
Q Consensus       319 ~~~~~~i~~~~~~~~~  334 (357)
                      .+..++++.....+..
T Consensus       290 ~f~~~~~~~~~l~~~~  305 (417)
T COG2223         290 VFVGMALAAALLSLFL  305 (417)
T ss_pred             HHHHHHHHHHHHHccc
Confidence            8888888877766643

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.97  E-value=1.1e-27  Score=215.75  Aligned_cols=304  Identities=14%  Similarity=0.110  Sum_probs=227.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      +|.+..+....++..++..+..+.+|.+.++.        +.+..+.|++.+.+.++..+++++.|+++||+|||+++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~   87 (417)
T PRK10489         16 HPAFRAVFIARFISIFGLGLLGVAVPVQIQMM--------TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL   87 (417)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEe
Confidence            45667777888899999999999999998753        3355678999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHH-----ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhH
Q 018388           87 PLTLSIIPLAILAY-----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (357)
Q Consensus        87 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  161 (357)
                      +.++.+++......     .++   ++.+++.|+++|+ +.+...+...+++.|..|+|+|+++.++.....++|..+||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  163 (417)
T PRK10489         88 ARGTCGLGFIGLALNAFLPEPS---LLAIYLLGLWDGF-FGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISP  163 (417)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHH-HHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHH
Confidence            88877776655442     345   7788899999999 66666788899999999999999999999999999999999


Q ss_pred             hhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHH
Q 018388          162 LAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (357)
Q Consensus       162 ~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (357)
                      .+++.+    +|++.|++.++..++..++ .+.+||++++++++                           ++..++.++
T Consensus       164 ~l~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~---------------------------~~~~~~~~~  215 (417)
T PRK10489        164 ALGGLLIAAGGVAWNYGLAAAGTFITLLP-LLRLPALPPPPQPR---------------------------EHPLRSLLA  215 (417)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhCCCCCCCCccc---------------------------ccchHHHHH
Confidence            998875    7899998887765554443 44566653321110                           000112223


Q ss_pred             HHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHH
Q 018388          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (357)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  317 (357)
                      ..+..+++|.++...+..++... ......++|.|.++.+|.++.+.+.+.+..+++..++. ++.+++.||.++++.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~-~~~~~l~~~~~~~~~l~  293 (417)
T PRK10489        216 GFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGA-LTSGWLAHSARPGLLML  293 (417)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHH-HHHHHhhhccCcchHHH
Confidence            33445567776665555544333 35667889999999789999999999999999988888 78899999987777888


Q ss_pred             HHHHHHHHHHHHHHhcCcchHHHH-HHHHHHhhhcc
Q 018388          318 LGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFA  352 (357)
Q Consensus       318 ~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~  352 (357)
                      .+.....++.+++.+.++.+.... ..+++++.+..
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  329 (417)
T PRK10489        294 LSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAIS  329 (417)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence            888777777777766665443333 34445555443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.97  E-value=3.7e-28  Score=216.16  Aligned_cols=272  Identities=14%  Similarity=0.075  Sum_probs=208.6

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHH
Q 018388           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (357)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~   96 (357)
                      .+..........+..|.+.+        +++.+..+.|++.+++.++..++.++.|+++||+|||+.+..+.++..++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   75 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVE--------EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNL   75 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHH--------HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHH
Confidence            44556667777777887655        3455667789999999999999999999999999999999999999999999


Q ss_pred             HHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhH-hhhHH----hhhHH
Q 018388           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT-LAARF----LSTTS  171 (357)
Q Consensus        97 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~----l~~~~  171 (357)
                      ++.++++   ++.+++.|++.|+ +.+...+...+++.|+.|+|+|++++++.+....+|..++| .+++.    .+||+
T Consensus        76 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  151 (379)
T TIGR00881        76 FFGFSTS---LWVMAALWALNGI-FQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHW  151 (379)
T ss_pred             HHHHhhh---HHHHHHHHHHHHh-hccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchh
Confidence            9999998   8899999999999 66777789999999999999999999999999999999998 45544    38999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHH
Q 018388          172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQA  251 (357)
Q Consensus       172 ~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (357)
                      .|++.+++.++..+..++..||++++++.+.+.+.         +.++.+.. .+..+++..+.+...+.+.++|.++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (379)
T TIGR00881       152 VFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEM---------PNEEPDGD-AEKKEEELTKKQIFLQYVLLNKVLWYI  221 (379)
T ss_pred             HHHHHHHHHHHHHHHHheeeCCCccccccCccccC---------cccccccc-cccccccccchHHHHHHHHhcchHHHH
Confidence            99988887776666666667776543322111000         00000000 000011111222223345568888888


Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 018388          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG  311 (357)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  311 (357)
                      .+..++..........+.|.|+++.+|+++.+.+.......++..++. ++.+++.||..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~~  280 (379)
T TIGR00881       222 SLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGT-LLAGWLSDKLF  280 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhH-HHHHHHHHHHc
Confidence            888888888888889999999998889999999999999999999988 88899999863

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=1.6e-27  Score=212.14  Aligned_cols=265  Identities=14%  Similarity=0.160  Sum_probs=211.8

Q ss_pred             HHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHH
Q 018388           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (357)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~  100 (357)
                      .++..+..|.+|.+.++        ++.+..+.|++.+++.++..++.++.|+++||+|||+.+..+.++..++...+.+
T Consensus         4 ~~~~~~~~p~~~~~~~~--------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~   75 (377)
T PRK11102          4 PLAIDMYLPALPVIAAD--------FGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL   75 (377)
T ss_pred             chHHHHHhccHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH
Confidence            35667788999999864        4566678899999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHHH
Q 018388          101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAA  176 (357)
Q Consensus       101 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~  176 (357)
                      +++   ++.+++.|+++|+ +.+...+...+++.|++|+|+|++++++.+....+|..++|.+++.+    +||+.|++.
T Consensus        76 ~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  151 (377)
T PRK11102         76 AQT---IDQLIYMRFLHGL-AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL  151 (377)
T ss_pred             Hcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            998   8888999999999 66777788999999999999999999999999999999999888764    899999988


Q ss_pred             HHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHH
Q 018388          177 TIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAF  256 (357)
Q Consensus       177 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (357)
                      +.+..+..++..+..||++++++++                          +.+.++..++.. ...+++..+...+..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  204 (377)
T PRK11102        152 ALAAILAAALVFFFIPETLPKERRQ--------------------------PFHLRTTIRNFA-SLFRHKRVLGYMLASG  204 (377)
T ss_pred             HHHHHHHHHHHHHhCCccCcccccC--------------------------CCChHHHHHHHH-HHHcChHHHHHHHHHH
Confidence            8887776666666677754322111                          000011122222 2445677666666666


Q ss_pred             HHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHH
Q 018388          257 FSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (357)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i  325 (357)
                      +..........+.|.+..+.+|+++.+.+.+.....+...+++ ++.+++.||+++|+.+..+.....+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~  272 (377)
T PRK11102        205 FSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMT-IINSRFVRRVGALNMLRFGLWIQFI  272 (377)
T ss_pred             HHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            6666666667777888888789999999999999999988888 8889999999999988877765443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.96  E-value=4.8e-27  Score=212.46  Aligned_cols=284  Identities=14%  Similarity=0.062  Sum_probs=194.9

Q ss_pred             chhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhcCcchh
Q 018388            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSG-FQQAIIGLGTLVMMPVIGNLSDQYGRKAM   83 (357)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~Grk~~   83 (357)
                      .|++.....+++.+++.++...+.+..|.+.++. +.++.+.+  ....+ .......+...+++++.|+++||+|||+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~   88 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTF-FPAGNEFA--SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG   88 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCchH--HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH
Confidence            4556677889999999999999999999988874 22222211  11101 12223344456788999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHccchhHH-----HHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHH
Q 018388           84 LTLPLTLSIIPLAILAYRRSISFF-----YAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV  158 (357)
Q Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  158 (357)
                      ++.+.++..+++.++++++++...     ..++++|+++|+ +.+...+....+++|++|+|+|++++++.+....+|..
T Consensus        89 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~  167 (434)
T PRK15075         89 LIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGF-SAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV  167 (434)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhc-cccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence            999999999999999999983211     146899999999 66777788899999999999999999999888888777


Q ss_pred             hhHhhhHH------------hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCc
Q 018388          159 CGTLAARF------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKI  226 (357)
Q Consensus       159 ~g~~~~~~------------l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (357)
                      +|+.+++.            .+||++|++..... ..........||+++..+++                  ++     
T Consensus       168 ~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~-~~~~~~~~~~~e~~~~~~~~------------------~~-----  223 (434)
T PRK15075        168 FAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIV-PFIFLIRRSLEETEEFLARK------------------HR-----  223 (434)
T ss_pred             HHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHhh------------------hc-----
Confidence            77666553            48999998764432 21111111222221100000                  00     


Q ss_pred             cccccchhHHHHHHhhhcccchHHH-HHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhh
Q 018388          227 PVCKKIPSIRDLICLLRSSVTLSQA-AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPL  305 (357)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (357)
                        .    +.++.++..+++++.+.. ....+...........+.|.|+++.+|++..+.+.......++..++. ++.|+
T Consensus       224 --~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~  296 (434)
T PRK15075        224 --P----SMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWL-PIGGA  296 (434)
T ss_pred             --c----ccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence              0    001112122233333322 333344455566778899999998889999888888888888888888 88899


Q ss_pred             hhhccchhHHHHHHHHHH
Q 018388          306 LAPILGEAKLLSLGLFAA  323 (357)
Q Consensus       306 l~~~~~~~~~~~~~~~~~  323 (357)
                      +.||++||+....+....
T Consensus       297 l~Dr~g~r~~~~~~~~~~  314 (434)
T PRK15075        297 LSDRIGRRPVLIAFTVLA  314 (434)
T ss_pred             HHHHhcchHHHHHHHHHH
Confidence            999999999877665444

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.96  E-value=3.8e-28  Score=222.94  Aligned_cols=312  Identities=14%  Similarity=0.120  Sum_probs=211.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      ......++.+...++...+.+..|.+.++...+..++.+.+..+.|++.+++.++..++++++|+++||+|||++++.+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~   92 (479)
T PRK10077         13 ITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAA   92 (479)
T ss_pred             HHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            34455666777888888888888888777655555667888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHc---------cchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHh
Q 018388           89 TLSIIPLAILAYR---------RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC  159 (357)
Q Consensus        89 ~~~~~~~~~~~~~---------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (357)
                      ++..++.+.++++         ++...++.+++.|+++|+ +.|...+...++++|++|+|+|+++++..+....+|..+
T Consensus        93 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~  171 (479)
T PRK10077         93 VLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI-GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLV  171 (479)
T ss_pred             HHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhh-hHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHH
Confidence            9998888877763         233335678899999999 778888999999999999999999999999999999998


Q ss_pred             hHhhhHH------------hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCcc
Q 018388          160 GTLAARF------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIP  227 (357)
Q Consensus       160 g~~~~~~------------l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (357)
                      ++.+++.            .+||+.|++.++..++..+ ..+++||++++...+.+.++.....++    .....+.+  
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~~s~~~l~~~~~~~~~~~~~~~----~~~~~~~~--  244 (479)
T PRK10077        172 VYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM-LLYFVPETPRYLMSRGKQEQAEGILRK----IMGNTLAT--  244 (479)
T ss_pred             HHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH-HHHcCCCCcHHHHHcCCHHHHHHHHHH----HcCChhHH--
Confidence            8876543            3799999998777666544 456789887532111110000000000    00000000  


Q ss_pred             ccccchhHHHHHHh-hhcccchHH-----HHH----HHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHH
Q 018388          228 VCKKIPSIRDLICL-LRSSVTLSQ-----AAV----VAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTI  297 (357)
Q Consensus       228 ~~~~~~~~~~~~~~-~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  297 (357)
                        ...++.++..+. ..+.+....     ...    ..+...........+.|.+.++ .|.+...........++...+
T Consensus       245 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i  321 (479)
T PRK10077        245 --QALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLT  321 (479)
T ss_pred             --HHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHH
Confidence              000011110000 000011100     010    0111111122334455666665 488887767777777778888


Q ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHh
Q 018388          298 SQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI  332 (357)
Q Consensus       298 ~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  332 (357)
                      +. ++.+++.||++||+.+..+..+.+++.+.+..
T Consensus       322 ~~-~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~  355 (479)
T PRK10077        322 FT-VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT  355 (479)
T ss_pred             HH-HHHHHHHHHhcChHHHHHhHHHHHHHHHHHHH
Confidence            87 88899999999999999999988888766644

>PRK12382 putative transporter; Provisional

Probab=99.96  E-value=3.3e-27  Score=211.07  Aligned_cols=300  Identities=14%  Similarity=0.124  Sum_probs=210.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh
Q 018388            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (357)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~   85 (357)
                      +++.++.+.+..++..++.++..|.+|.+.++       +++.+..+.|++.+.+.++..++++++|+++||+||||+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~-------~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~   85 (392)
T PRK12382         13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHH-------DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSAL   85 (392)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHH-------hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHH
Confidence            35667778888899999999999999988764       45667788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH---ccc--hhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhh
Q 018388           86 LPLTLSIIPLAILAY---RRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (357)
                      .+.+...++.+....   .++  ...++.+++.|+++|+ +.+...+...+++.|..|+|+|++++++.+.....|..+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g  164 (392)
T PRK12382         86 QGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGF-GESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAG  164 (392)
T ss_pred             HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHH
Confidence            988877665543322   111  1127888999999999 6677778888999999999999999999999999999999


Q ss_pred             HhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHH
Q 018388          161 TLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (357)
Q Consensus       161 ~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (357)
                      |.+++.+    +||+.+.+..+..++..    ...++.++.++++                            +++++.+
T Consensus       165 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----------------------------~~~~~~~  212 (392)
T PRK12382        165 APLGLLLHSHFGFAALALTTMVLPLLAW----AFNGTVRKVPAHA----------------------------GERPSLW  212 (392)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHHHHHH----HHHHhccCCCCCc----------------------------ccCchHH
Confidence            9988764    78877665544432221    1122221111100                            0000122


Q ss_pred             HHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHH
Q 018388          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (357)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (357)
                      +..+.+++ +.     +..++..........+.|.|+++. |++.  .+......+++..+++ +..+++.||+++|+.+
T Consensus       213 ~~~~~~~~-~~-----~~~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~  282 (392)
T PRK12382        213 SVVGLIWK-PG-----LGLALQGVGFAVIGTFVSLYFASK-GWAM--AGFTLTAFGGAFVLMR-VLFGWMPDRFGGVKVA  282 (392)
T ss_pred             HHHHHHHH-hH-----HHHHHHHHHHhHHHHHHHHHHHhc-CCch--hHHHHHHHHHHHHHHH-HHHHHHHHhcCCCeeh
Confidence            22222221 11     122233344555677788888775 6653  4566666677777777 7889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcchHHHH-HHHHHHhhhccccc
Q 018388          317 SLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPS  355 (357)
Q Consensus       317 ~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~  355 (357)
                      ..+..+..++.+++.+.++.+..+. ..+.+++.+...|.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  322 (392)
T PRK12382        283 IVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPA  322 (392)
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHH
Confidence            8888888888777777666554443 44556666655543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.96  E-value=7.4e-27  Score=212.25  Aligned_cols=255  Identities=13%  Similarity=0.080  Sum_probs=188.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccch-hHHHHHHHHHHHhhhcccchH
Q 018388           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSI  125 (357)
Q Consensus        47 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~  125 (357)
                      +.+..+.|++.+.+.++..+++++.|+++||+|||++++.+.++.+++.+.+++++.. ..++.+++.|++.|+ +.+..
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi-~~g~~  137 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW-FQGMG  137 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHH-HHhcc
Confidence            6667788999999999999999999999999999999999999999998888876411 116778899999999 66666


Q ss_pred             HHHHHHHHhhCCCccchhHHHHHHHHHHHHHH-HhhHhhhHH----hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 018388          126 NCLALAYVADNISERQRASAFGILLGVLSASF-VCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (357)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~~g~~~~~~----l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~  200 (357)
                      .+.....+.|++|+|+|++++++.+.+..+|. ..+|+++..    .+||+.|++.+++.++..++..+++||++++...
T Consensus       138 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~  217 (452)
T PRK11273        138 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGL  217 (452)
T ss_pred             chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC
Confidence            67777888999999999999999999999886 455654322    2899999998887777666667778887654221


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccchhHHHH-HHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhccc
Q 018388          201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL-ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF  279 (357)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  279 (357)
                      +.+.+ .        +.+.++....+ + ++..+.++. .+..++++.++...+..++..........++|.|+++..|+
T Consensus       218 ~~~~~-~--------~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~  286 (452)
T PRK11273        218 PPIEE-Y--------KNDYPDDYNEK-H-EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHF  286 (452)
T ss_pred             CChhh-h--------hhccccccccc-c-CCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            11000 0        00000000000 0 001112222 23356688888888888887777788889999999998899


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhhhcc--chhH
Q 018388          280 NKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAK  314 (357)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~  314 (357)
                      +..+.+.......++..++. ++.|++.||+  +||.
T Consensus       287 s~~~~~~~~~~~~~~~~~g~-~~~G~l~dr~~~~r~~  322 (452)
T PRK11273        287 ALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRG  322 (452)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCcc
Confidence            98888888888888888888 8899999998  4443

>PRK11043 putative transporter; Provisional

Probab=99.96  E-value=2.3e-26  Score=206.29  Aligned_cols=270  Identities=17%  Similarity=0.110  Sum_probs=204.6

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      +........+..++.+++.|.+|.+.+        +++.+..+.|+..+++.++..++.+++|+++||+|||+.+..+.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~--------~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   79 (401)
T PRK11043          8 LVYLAGLSMLGFLATDMYLPAFKAIQA--------DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLS   79 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHH--------HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHH
Confidence            344444566677778888888888765        345667788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh--
Q 018388           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (357)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--  167 (357)
                      +..++..++.++++   ++.+++.|+++|+ +.+...+...+++.|.+|++++++..+.......+|..++|.+++.+  
T Consensus        80 ~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  155 (401)
T PRK11043         80 LFALGSLGMLWVES---AAQLLVLRFVQAV-GVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN  155 (401)
T ss_pred             HHHHHHHHHHHhcC---HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999998   8889999999999 65666677888999999999999999998888888988999888774  


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcc
Q 018388          168 --STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (357)
Q Consensus       168 --~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (357)
                        +||+.|++.+++.++..+..+ .++|++++++++                            +++   ++ .+.+.++
T Consensus       156 ~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------------~~~---~~-~~~~~~~  202 (401)
T PRK11043        156 HFGWQAIFATLFAITLLLILPTL-RLKPSKKARKQS----------------------------QDA---LT-FKQLLKS  202 (401)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHH-HcCCCCCccccc----------------------------hHH---HH-HHHHHcC
Confidence              899999988877666555443 345433211110                            001   12 2223446


Q ss_pred             cchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHH
Q 018388          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (357)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i  325 (357)
                      ++.+...+..............+.|.+.++ +|+++.+.+.......++..+++ +..+++.||+++|+.........++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~-~~~~~l~~r~~~~~~~~~~~~~~~~  280 (401)
T PRK11043        203 KTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGG-YGCRAALQKWGGEQLLPWLLVLFAV  280 (401)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            666555555555555556667788988876 59999998988877777777877 7889999999998876555544444


Q ss_pred             H
Q 018388          326 N  326 (357)
Q Consensus       326 ~  326 (357)
                      +
T Consensus       281 ~  281 (401)
T PRK11043        281 S  281 (401)
T ss_pred             H
Confidence            3

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.96  E-value=3.6e-27  Score=220.93  Aligned_cols=173  Identities=16%  Similarity=0.141  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHH
Q 018388           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (357)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~   91 (357)
                      .+.++.+...+....+.+++|.+..+        ++++..+.|++.+++.++.+++.+++|+++||+|||+.++++.++.
T Consensus       171 i~~l~~~~~g~d~~~is~ilp~i~~~--------~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       171 VLGLALMADGVEVFVVGFVLPSAEKD--------LCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34444555556666677788877653        4556677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----
Q 018388           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (357)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----  167 (357)
                      +++.++++++++   ++.++++|++.|+ +.+...+...+++.|++|+++|++.+++...+..+|.++++.++..+    
T Consensus       243 ~i~~ll~afa~s---~~~llv~R~l~G~-g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~  318 (742)
T TIGR01299       243 GFFAFFSSFVQG---YGFFLFCRLLSGF-GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY  318 (742)
T ss_pred             HHHHHHHHHHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999998   8899999999999 66777799999999999999999999999999999999988765331    


Q ss_pred             -------------hhHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018388          168 -------------STTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (357)
Q Consensus       168 -------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~  197 (357)
                                   +||+.+++.++..++ .++..+++||+|++
T Consensus       319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll-~ll~~~~lPESPrw  360 (742)
T TIGR01299       319 GWSFQMGSAYQFHSWRVFVIVCAFPCVF-AIGALTFMPESPRF  360 (742)
T ss_pred             cchhccccccccccHHHHHHHHHHHHHH-HHHHHHHcCCCHHH
Confidence                         589988887766444 44556778999875

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.96  E-value=2.9e-27  Score=216.00  Aligned_cols=285  Identities=12%  Similarity=0.058  Sum_probs=212.1

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHh--------------cCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018388           11 SHLFVTVFLWGFATMMVVPAITDVTMMAL--------------CPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD   76 (357)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~d   76 (357)
                      ..+.+...+...+........+.+.++..              +..+.+++++..+.|++.+.+.+++.+++++.|+++|
T Consensus        22 ~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d  101 (465)
T TIGR00894        22 FLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAG  101 (465)
T ss_pred             HHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcchHHHHH
Confidence            34455555556666666556555543210              0011267889999999999999999999999999999


Q ss_pred             hcCcchhhhHHHHHHHHHHHHHHHc--cchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHH
Q 018388           77 QYGRKAMLTLPLTLSIIPLAILAYR--RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLS  154 (357)
Q Consensus        77 r~Grk~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  154 (357)
                      |+|||+.+..+.++..++.+++.++  .+   ++.+++.|+++|+ +.+...+....++.|++|+++|++++++...+..
T Consensus       102 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~~~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  177 (465)
T TIGR00894       102 KYVFKWSIGIGMFLSSVISIVIPWAAGGG---IALVVFCRVIQGL-AQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQ  177 (465)
T ss_pred             HhCcchhhHHHHHHHHHHHHHHHHHHHcC---chHHHHHHHHHHH-hcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            9999999999999998888876544  45   6778999999999 7788889999999999999999999999999999


Q ss_pred             HHHHhhHhhhHHh-----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCcccc
Q 018388          155 ASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVC  229 (357)
Q Consensus       155 ~g~~~g~~~~~~l-----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (357)
                      +|..++|.+++.+     +||+.|++.++..++..++.+...+|+|+.+++..+.++      +..++..++  .+ .+.
T Consensus       178 ~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------~~i~~~~~~--~~-~~~  248 (465)
T TIGR00894       178 LGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEK------KYINSSLQG--QK-GST  248 (465)
T ss_pred             HHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHH------HHHHhhccc--cc-CCC
Confidence            9999999888764     789999999888776666555556665543222111000      000000000  00 001


Q ss_pred             ccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018388          230 KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI  309 (357)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (357)
                      +...++++    +.+++.++...+..+..........+++|.|+++.+|.+..+.+...+...++..++. ++.|++.||
T Consensus       249 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~-~~~g~l~d~  323 (465)
T TIGR00894       249 RQSLPIKA----IPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCS-IFAGYLADF  323 (465)
T ss_pred             CCCCCHHH----HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            11123343    4568888989998888888888889999999999889999999999999999988888 888999998


Q ss_pred             cchh
Q 018388          310 LGEA  313 (357)
Q Consensus       310 ~~~~  313 (357)
                      .++|
T Consensus       324 ~~~~  327 (465)
T TIGR00894       324 LKSS  327 (465)
T ss_pred             HHHc
Confidence            7543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.96  E-value=3.2e-26  Score=207.34  Aligned_cols=254  Identities=13%  Similarity=0.091  Sum_probs=189.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccch-hHHHHHHHHHHHhhhcccchH
Q 018388           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSI  125 (357)
Q Consensus        47 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~  125 (357)
                      +.+..+.|++.+++.++..++.++.|+++||+|||+.+..+.++.+++..+....++. ..++.+.+.|++.|+ +.+..
T Consensus        57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~-~~g~~  135 (438)
T TIGR00712        57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGW-FQGMG  135 (438)
T ss_pred             CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHH-Hhhcc
Confidence            5666778999999999999999999999999999999999999998888877765321 116677889999998 66666


Q ss_pred             HHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH-----hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 018388          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (357)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~-----l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~  200 (357)
                      .+.....+.|++|+|+|++++++.+....+|..++|.+.+.     .+||+.|++.+++.++..+..++.+||++++.+.
T Consensus       136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~  215 (438)
T TIGR00712       136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL  215 (438)
T ss_pred             hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence            67888999999999999999999999999999888766543     3899999999888777666667777876543221


Q ss_pred             CCCCcccccccccccccCCCCCCCCccccccchhHHHH-HHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhccc
Q 018388          201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL-ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF  279 (357)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  279 (357)
                      +.+.+.       +.+..++.   .++.+++. +.++. .+...+++.++...+..++.........+++|.|+++..|+
T Consensus       216 ~~~~~~-------~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~  284 (438)
T TIGR00712       216 PPIEEY-------RNDYPDDY---NEKAEQEL-TAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHF  284 (438)
T ss_pred             CCchhc-------cccccccc---cccccccc-chHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCC
Confidence            100000       00000000   00000000 11221 22356788888887777777777778889999999988899


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhhhccchh
Q 018388          280 NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA  313 (357)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  313 (357)
                      ++.+.+.......+...+++ ++.+++.||++++
T Consensus       285 s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~  317 (438)
T TIGR00712       285 ALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFKG  317 (438)
T ss_pred             ChhhHHHHHHHHHHHHHHHH-HHHHHHHHHhccC
Confidence            99999999999988888888 8899999999643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.96  E-value=9.7e-26  Score=199.99  Aligned_cols=272  Identities=14%  Similarity=0.116  Sum_probs=209.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      +|+++...+..++.+....+..|+.+.+.++       +++++..+.+++.+++.++..++.++.|++.||+|.|+++..
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~-------~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~  105 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKI-------GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVF  105 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            3677788888888888888888888877542       577888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHc-----cchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHh--
Q 018388           87 PLTLSIIPLAILAYR-----RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC--  159 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~--  159 (357)
                      +.++..+.+...+++     ++   ++.+++.|++.|+ + +...+.....+++++|+|+||+++|+.....++|..+  
T Consensus       106 ~~ll~~i~~~~~~~a~~~~~~s---~~~lli~r~l~Gi-g-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~  180 (462)
T PRK15034        106 STAILIIPCVWLGIAVQNPNTP---FGIFIVIALLCGF-A-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ  180 (462)
T ss_pred             HHHHHHHHHHHHHHHHcccCCC---HHHHHHHHHHHHH-H-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence            999999999999886     67   8999999999999 5 4566889999999999999999999997666666544  


Q ss_pred             --hHhhhH------------------HhhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCC
Q 018388          160 --GTLAAR------------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNE  219 (357)
Q Consensus       160 --g~~~~~------------------~l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (357)
                        +|.+.+                  ..+||..+++..++.++..++.++..++.++. +.                   
T Consensus       181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-~~-------------------  240 (462)
T PRK15034        181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS-RA-------------------  240 (462)
T ss_pred             HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-cc-------------------
Confidence              443321                  22477777777777666666666655443321 11                   


Q ss_pred             CCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHH
Q 018388          220 SNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQ  299 (357)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  299 (357)
                                    +.++..+ ..|+|..|...+.+++....+.++..++|.|.++.+  +............+...+.+
T Consensus       241 --------------~~~~~~~-vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~r  303 (462)
T PRK15034        241 --------------SIADQLP-VLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIAR  303 (462)
T ss_pred             --------------CHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHH
Confidence                          2244344 445889999999999988888888889999998865  33332222334456666777


Q ss_pred             HHHHhhhhhccchhHHHHHHHHHHHHHHH
Q 018388          300 LLFMPLLAPILGEAKLLSLGLFAACINMF  328 (357)
Q Consensus       300 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~~  328 (357)
                       .++|+++||+|+++++..+.+...+...
T Consensus       304 -plgG~LADRiG~~~vl~~~~i~~~i~~~  331 (462)
T PRK15034        304 -SVGGAISDKFGGVRVTLINFIFMAIFSA  331 (462)
T ss_pred             -HhhHHHHHhcCchHHHHHHHHHHHHHHH
Confidence             7889999999999999888877766643

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.96  E-value=8.2e-26  Score=201.88  Aligned_cols=286  Identities=15%  Similarity=0.143  Sum_probs=198.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhh-h
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML-T   85 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l-~   85 (357)
                      +......++..++..++..+..|.+|.+..+       +++.+..+.|++.+...+...+.+++.|.++||+||||.+ .
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~-------~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~   86 (393)
T PRK15011         14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTD-------EVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIV   86 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence            4556777888999999999999999999865       4566667789988776665555555555559999999875 4


Q ss_pred             HHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchh--HHHHHHHHHHHHHHHhhHhh
Q 018388           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRA--SAFGILLGVLSASFVCGTLA  163 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~g~~~  163 (357)
                      .+.+...++..+.+++++   ++.+++.+.+.+. ..+...|...++..|+.++++|.  ...+..+...++|.++||.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i  162 (393)
T PRK15011         87 FCCLLGVLACTLFAWNRN---YFVLLFVGVFLSS-FGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPL  162 (393)
T ss_pred             HHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHH
Confidence            566666677777788888   7766655555444 23456688888888887766553  44578888999999999999


Q ss_pred             hHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHH
Q 018388          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (357)
Q Consensus       164 ~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (357)
                      ++.+    |||..|+..++..++..+..++.+||++++++++ +                +       +.+   ..+   
T Consensus       163 ~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------~-------~~~---~~~---  212 (393)
T PRK15011        163 AYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLA-T----------------G-------TLE---APR---  212 (393)
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccc-c----------------c-------ccc---ccc---
Confidence            8765    9999999998887777666667778764332211 0                0       000   000   


Q ss_pred             HhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHH
Q 018388          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (357)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (357)
                         ++++..+......+........+..+.|.|+++.+|+++.+.+.+.....+..+++. ++.|++.||+++|+.+..+
T Consensus       213 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~-~~~G~l~dr~g~~~~~~~~  288 (393)
T PRK15011        213 ---RNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTM-LIAGYFAKRLGKRFLMRVA  288 (393)
T ss_pred             ---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHHH
Confidence               011222333333344444555567789999988889999888988877777776767 8889999999999987777


Q ss_pred             HHHHHHHHHHHHhcCcch
Q 018388          320 LFAACINMFICSISWSAW  337 (357)
Q Consensus       320 ~~~~~i~~~~~~~~~~~~  337 (357)
                      .....+.+..+...++.+
T Consensus       289 ~~~~~~~~~~~~~~~~~~  306 (393)
T PRK15011        289 AVAGVCFYAGMLMAHSPA  306 (393)
T ss_pred             HHHHHHHHHHHHHHhhHH
Confidence            665555544444444443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=3.3e-27  Score=210.66  Aligned_cols=278  Identities=15%  Similarity=0.103  Sum_probs=225.5

Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhccc
Q 018388           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (357)
Q Consensus        43 ~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  122 (357)
                      +.++.++..+.|++.+.+..|+.++..+.|+++||+|-|+++..+.++.++++++...+.+.+ ++.+++.|++||+ +.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~-~~~~~~~R~lqGl-~~  142 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG-FYLLLVLRFLQGL-GQ  142 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHhHH-HH
Confidence            457889999999999999999999999999999999999999999999999999999887644 4577999999999 88


Q ss_pred             chHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-----hhHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018388          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (357)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~  197 (357)
                      |...|+...+.++|.|++||++..++...+..+|.+++-.++|++     ||+++|++.++++++..++.+++..|+|.+
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            999999999999999999999999999999999999988888775     899999999999888877766667776655


Q ss_pred             CCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhc
Q 018388          198 DDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF  277 (357)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (357)
                      .+.-.+.         |.+..++.....+...+...|+++    +.+++.+|...+..+...........++|.|+++.+
T Consensus       223 h~~is~~---------El~~I~~~k~~~~~~~~~~vP~~~----i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL  289 (466)
T KOG2532|consen  223 HPNISEK---------ELKYIEKGKSEAHVKKKPPVPYKA----ILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL  289 (466)
T ss_pred             CCCCCHH---------HHHHHHhcccccccCCCCCCCHHH----HHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence            3321100         000000111111111113446666    557999999999999999999999999999999999


Q ss_pred             ccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccch---------hHHHHHHHHHHHHHHHHHHhcCcc
Q 018388          278 HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE---------AKLLSLGLFAACINMFICSISWSA  336 (357)
Q Consensus       278 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~  336 (357)
                      |++..+.|++.++..+...+.. +++|.++||..+         |-.-.++....++.++.+.+.++.
T Consensus       290 ~f~v~~~G~~salP~l~~~~~k-~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~  356 (466)
T KOG2532|consen  290 GFDVRETGFLSALPFLAMAIVK-FVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDE  356 (466)
T ss_pred             CCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCC
Confidence            9999999999999999999988 899999998754         233456666666667777776643

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.96  E-value=5.1e-26  Score=202.45  Aligned_cols=300  Identities=13%  Similarity=0.001  Sum_probs=220.6

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH-
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL-   88 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~-   88 (357)
                      ...+.+..+....+.++..|.+|.+.++        .+.+..+.|++.+++.+...++++++|+++||+|||+...... 
T Consensus         6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~~--------~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~   77 (382)
T TIGR00902         6 FRWLALGFFGYFCAYGIFLPFFPAWLKG--------IGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLA   77 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            3456777888888899999999999874        4667788999999999999999999999999999854332211 


Q ss_pred             HHHHHHH-HHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           89 TLSIIPL-AILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        89 ~~~~~~~-~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      ....+.. ..+..+++   ++.+++.|.++|. ..+...|...++..|.  +|+|++..+......++|.++||.+++.+
T Consensus        78 ~~~~l~~~~~~~~~~~---~~~l~~~~~l~~~-~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l  151 (382)
T TIGR00902        78 LASAIFAAAFSAGAHN---AWLLFIAIGLFAL-FFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGL  151 (382)
T ss_pred             HHHHHHHHHHHHhhhh---HHHHHHHHHHHHH-HHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            1111111 23345677   8889999999998 4455568888887664  47889999999999999999999988775


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhh
Q 018388          168 ----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (357)
Q Consensus       168 ----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (357)
                          |||..|++.+.. .+..+. .+..+|++++++++.                  +     ++.+   +.++..+ +.
T Consensus       152 ~~~~g~~~~f~~~~~~-~~~~~~-~~~~~~~~~~~~~~~------------------~-----~~~~---~~~~~~~-~l  202 (382)
T TIGR00902       152 IGMFDEQNILAILTAG-LAFMLI-GFLIKPTIPPKDAIP------------------E-----DESQ---GDSAFIA-LL  202 (382)
T ss_pred             HHHcChhHHHHHHHHH-HHHHHH-HHHcCCCCCCCcccc------------------c-----cccc---cchhHHH-HH
Confidence                899998887655 222222 233343321111100                  0     0000   1112222 44


Q ss_pred             cccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHH
Q 018388          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (357)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (357)
                      |+|+++...+..++.......+.++.|.|+++ .|.++.++|.......+..++.. .+.+++.||+++|+.+..+.+..
T Consensus       203 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~-~~~~~l~~r~g~~~~l~~~~~~~  280 (382)
T TIGR00902       203 KNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIF-AFSNKLFQNCSARDLLLISAIAC  280 (382)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHH-HHhHHHHhhCCHHHHHHHHHHHH
Confidence            68888888888888888888999999999988 59999999999998877877777 88899999999999999999999


Q ss_pred             HHHHHHHHhcCcchHHHH-HHHHHHhhhcccc
Q 018388          324 CINMFICSISWSAWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       324 ~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p  354 (357)
                      .+....+.+.++.+..+. ..+-++..+...|
T Consensus       281 ~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~  312 (382)
T TIGR00902       281 VGRWAIIGAIEAFPLIFLLQILHCGTFAVCHL  312 (382)
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999988888877776665 4455665555444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.96  E-value=5e-27  Score=215.41  Aligned_cols=312  Identities=14%  Similarity=0.071  Sum_probs=207.5

Q ss_pred             HHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHH
Q 018388           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL   95 (357)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~   95 (357)
                      ..++..++.....+.+|....+..-....+.+.+..+.|++.+++.++..++++++|+++||+|||++++.+.++..++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~  115 (481)
T TIGR00879        36 GGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGA  115 (481)
T ss_pred             HHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHH
Confidence            33445556677777778777662211122334567788999999999999999999999999999999999999999999


Q ss_pred             HHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh---HH----hh
Q 018388           96 AILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA---RF----LS  168 (357)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~---~~----l~  168 (357)
                      +++.+..+...++.+++.|+++|+ +.+...+...+++.|++|+++|++++++.+....+|..++|.++   ..    .+
T Consensus       116 ~~~~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  194 (481)
T TIGR00879       116 ILMGLAAFALSVEMLIVGRVLLGI-GVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG  194 (481)
T ss_pred             HHHHHhccccchHHHHHHHHHHHh-hhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence            888766543335688999999999 77788888999999999999999999999999999999999998   43    48


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCc-----------cccccchhHHH
Q 018388          169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKI-----------PVCKKIPSIRD  237 (357)
Q Consensus       169 ~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  237 (357)
                      ||+.|++.++..++ .++..+++||+++....+++.++..+...+..+.++++....+           +.+.....+++
T Consensus       195 w~~~f~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (481)
T TIGR00879       195 WRIPLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGS  273 (481)
T ss_pred             HHHHHHHHHHHHHH-HHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHH
Confidence            99999996655444 3444566788764211111110000000000000000000000           00000011122


Q ss_pred             HHHhhh--cccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHH
Q 018388          238 LICLLR--SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (357)
Q Consensus       238 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (357)
                      .++..+  +++.++...+..+...........+.|.+.++ .|++..+.+.......++..++. ++.+++.||+++|+.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~~~~~~  351 (481)
T TIGR00879       274 LFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFT-FVAIFLVDRFGRRPL  351 (481)
T ss_pred             HHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHH
Confidence            221111  12222223333333333344456666766665 59999888888888888888888 888999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018388          316 LSLGLFAACINMFICS  331 (357)
Q Consensus       316 ~~~~~~~~~i~~~~~~  331 (357)
                      +..+..+.+++.+++.
T Consensus       352 ~~~~~~~~~~~~~~~~  367 (481)
T TIGR00879       352 LLIGAAGMAICLFVLG  367 (481)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9888888777766665

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.96  E-value=4.7e-26  Score=209.68  Aligned_cols=317  Identities=14%  Similarity=0.136  Sum_probs=206.8

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      ......++.+...++........|.+..+..   ..+...+..+.+++.+...++..++.+++|+++||+|||+.+..+.
T Consensus        17 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~   93 (502)
T TIGR00887        17 AIVIAGVGFFTDSYDLFCISLVTKMLGYVYY---HGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            3445677778888888888888887655421   1123455667799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccchh---HHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhH
Q 018388           89 TLSIIPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (357)
Q Consensus        89 ~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  165 (357)
                      ++..++.++++++++..   .++.++++|+++|+ +.+...+....++.|++|+|+|++++++.+....+|..+|+.++.
T Consensus        94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~-~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887        94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGV-GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888875421   14678999999999 778778899999999999999999999999999999988887654


Q ss_pred             H---------------------------hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCC--CCCCC--cccccccccc
Q 018388          166 F---------------------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDD--DDDLT--RPIITEETEG  214 (357)
Q Consensus       166 ~---------------------------l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~--~~~~~~~~~~  214 (357)
                      .                           .+||+++.+.++..++. .+..+++||+|+...  +++|+  .+......+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~-~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~  251 (502)
T TIGR00887       173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA-LYFRLTIPETPRYTADVAKDVEQAASDMSAVLQV  251 (502)
T ss_pred             HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH-HHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcc
Confidence            2                           15999998877765544 444567899988522  11111  1111111000


Q ss_pred             c-ccCCCCCC-CCccccccchhHHHHHHhhhcccchHH---HHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHH---
Q 018388          215 V-NQNESNSP-VKIPVCKKIPSIRDLICLLRSSVTLSQ---AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFAD---  286 (357)
Q Consensus       215 ~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---  286 (357)
                      . +++.++.. .+++.+..+.++++.++...+++....   .....+...+.+++...+.|.++++. |+++.+.+.   
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~-G~~~~~~~~~~~  330 (502)
T TIGR00887       252 KIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAI-GYSPPAATNNAY  330 (502)
T ss_pred             ccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHH-cCCCCccchhHH
Confidence            0 00000000 000001111234443322111222111   12222333344555666788888764 876543211   


Q ss_pred             ---------HHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHh
Q 018388          287 ---------LMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI  332 (357)
Q Consensus       287 ---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  332 (357)
                               ......++.+++. ++.+++.||+|||+.+..+..+.+++..++.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~i~g~-~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~  384 (502)
T TIGR00887       331 EELYKTAVGNLIIALAGTVPGY-WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF  384 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence                     1222233444455 78899999999999988888777776655543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00901 2A0125 AmpG-related permease

Probab=99.96  E-value=5.4e-26  Score=200.67  Aligned_cols=268  Identities=15%  Similarity=0.063  Sum_probs=196.5

Q ss_pred             HhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-----Ccchhh-hHHHHHHHHHHHHH
Q 018388           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKAML-TLPLTLSIIPLAIL   98 (357)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----Grk~~l-~~~~~~~~~~~~~~   98 (357)
                      ....+.+|.+.+|        .+++..+.|+.... .+...+ .+++|+++||+     ||||.+ +.+.+..++.....
T Consensus         5 ~~~~~~~~~~~~~--------~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l   74 (356)
T TIGR00901         5 GLVGNTLPYWLRS--------KNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL   74 (356)
T ss_pred             hhHHhHHHHHHHH--------cCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            4566788888764        46666778888655 455554 89999999998     899975 56777777777777


Q ss_pred             HHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----h------
Q 018388           99 AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S------  168 (357)
Q Consensus        99 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~------  168 (357)
                      ++.++...++.+....++.+. ..+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+    +      
T Consensus        75 ~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~  153 (356)
T TIGR00901        75 SFLVPSTDLPLLAGLAFLIAF-FSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLI  153 (356)
T ss_pred             HcCCcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Confidence            777544446777777778887 66777789999999999999999999999999999999999888654    6      


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhccc
Q 018388          169 --TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV  246 (357)
Q Consensus       169 --~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (357)
                        ||..|++.++..++..+..++..||++++++.+                           +++..+.++..+.+++++
T Consensus       154 ~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~  206 (356)
T TIGR00901       154 TLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP---------------------------KPLTQAVLKPIREFFQRK  206 (356)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc---------------------------hhHHHHHHHHHHHHHHhc
Confidence              999999998876665554444456643211110                           000011122233344555


Q ss_pred             c---hHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHH-HHHHHHHHHHhhhhhccchhHHHHHHHHH
Q 018388          247 T---LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGL-AGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (357)
Q Consensus       247 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (357)
                      .   ++...+..++.........++.|.|+++ +|+++.+.+......+. ...++. ++.+++.||+|+|+.+..+.++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~-~~~g~l~~r~g~~~~l~~~~~~  284 (356)
T TIGR00901       207 NMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGG-LIGGIIMQPLNILYALLLFGIV  284 (356)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHH
Confidence            4   6666666677777788888999999998 69999999988887775 445555 8889999999999988888887


Q ss_pred             HHHHHHHHHh
Q 018388          323 ACINMFICSI  332 (357)
Q Consensus       323 ~~i~~~~~~~  332 (357)
                      .+++..++.+
T Consensus       285 ~~~~~~~~~~  294 (356)
T TIGR00901       285 QALTNAGFVW  294 (356)
T ss_pred             HHHHHHHHHH
Confidence            7777665444

>TIGR00896 CynX cyanate transporter

Probab=99.96  E-value=2.7e-26  Score=202.41  Aligned_cols=285  Identities=14%  Similarity=0.052  Sum_probs=208.7

Q ss_pred             HHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHc
Q 018388           22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR  101 (357)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~  101 (357)
                      .......|.+|.+.+        +++.+..+.|++.+.+.++..++.++.|+++||+|||+.+..+.++..++...+ .+
T Consensus        14 ~~~~~~~~~lp~l~~--------~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~   84 (355)
T TIGR00896        14 PALTSVGPLLPQIRS--------ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA   84 (355)
T ss_pred             CccccCcccHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh
Confidence            334566788888876        456667788999999999999999999999999999999999998888887776 66


Q ss_pred             cchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh------hhHHHHHH
Q 018388          102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL------STTSAFQA  175 (357)
Q Consensus       102 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l------~~~~~f~~  175 (357)
                      ++   .+.+++.|++.|+ +.+...+.....+.|..| ++|+++++..+....+|..+++.+++.+      +||+.|..
T Consensus        85 ~~---~~~l~~~~~~~g~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~  159 (355)
T TIGR00896        85 PG---TALLFAGTALIGV-GIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAW  159 (355)
T ss_pred             cc---HHHHHHHHHHHHH-HHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            77   7888899999999 666666677788888886 6899999999999999999888777654      28888877


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHH
Q 018388          176 ATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVA  255 (357)
Q Consensus       176 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (357)
                      .++..++..   ...+||.+++++++.                  +        ..+...++    ..|+|..+...+..
T Consensus       160 ~~~~~~~~~---~~~~~~~~~~~~~~~------------------~--------~~~~~~~~----~~~~~~~~~~~~~~  206 (355)
T TIGR00896       160 WALPALLAL---LAWIPQVRRRVAANQ------------------T--------TTRLTPVR----IWRSPLAWQVTVFF  206 (355)
T ss_pred             HHHHHHHHH---HHHhhhhccccCCCC------------------C--------CCCCCCch----hhcCHhHHHHHHHH
Confidence            665433322   223454432211100                  0        00001111    23466666666666


Q ss_pred             HHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhcc-chhHHHHHHHHHHHHHHHHHHhcC
Q 018388          256 FFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLSLGLFAACINMFICSISW  334 (357)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~  334 (357)
                      ++....+....+++|.|+++. |++..+.+...+...++.++++ ++.+++.||+ ++|+.+..+..+.+++...+.+.+
T Consensus       207 ~~~~~~~~~~~~~lp~~~~~~-g~~~~~~g~~~~~~~~~~i~~~-~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (355)
T TIGR00896       207 GLQSGLYYSLIGWLPAILISH-GASAATAGSLLALMQLAQAASA-LLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP  284 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHH-HhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh
Confidence            666677777888999999875 9999999999999999999998 8889999999 456677777777777766666654


Q ss_pred             cchHHHHHHHHHHhhhccccc
Q 018388          335 SAWVPYATTAFSVLVVFATPS  355 (357)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~p~  355 (357)
                      +........+++++.+...|.
T Consensus       285 ~~~~~~~~~l~g~~~g~~~~~  305 (355)
T TIGR00896       285 MHGLWAWALVLGLGQGGAFPL  305 (355)
T ss_pred             hhHHHHHHHHHHHhhhhHhHH
Confidence            433332345567776665553

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.96  E-value=8.3e-26  Score=205.15  Aligned_cols=309  Identities=16%  Similarity=0.193  Sum_probs=246.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh
Q 018388            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (357)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~   85 (357)
                      +++.+..++.+.++..++..+....++.+..+        .+-|+...|++.++..+..++.+++.|.++||++||++++
T Consensus         8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~--------lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili   79 (524)
T PF05977_consen    8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQ--------LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI   79 (524)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence            45778899999999999999999999988864        2445677899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHc--cchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhh
Q 018388           86 LPLTLSIIPLAILAYR--RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  163 (357)
                      .+.++..+.....++.  .+....+.+++..++.|+ +.+...|+.++++.|.+|+|+..+++++.+...++..++||.+
T Consensus        80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~-~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal  158 (524)
T PF05977_consen   80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGI-GSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL  158 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence            9988776655444432  222227888999999999 7788899999999999999999999999999999999999999


Q ss_pred             hHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHH
Q 018388          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (357)
Q Consensus       164 ~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (357)
                      +|.+    |-.+.|.+.++..++.... ....++++++++.                          ..++.....++.+
T Consensus       159 gG~Lva~~G~~~~f~inalsfl~~i~~-l~~~~~~~~~~~~--------------------------~~e~~~~~l~~G~  211 (524)
T PF05977_consen  159 GGILVAFFGAAAAFLINALSFLISILA-LLRWKPPPPPSSL--------------------------PRERFFSALREGL  211 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcccccccccc--------------------------chhhhhhhHHHHH
Confidence            9875    6688888887765544333 3333332211111                          0112234667778


Q ss_pred             HhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHH
Q 018388          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (357)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (357)
                      +.++++|.+...++..++.++........+|.+.++.+|.++...|++.+..++++++++ ++.+++.+|+++++++..+
T Consensus       212 ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Ga-l~~~~l~~~~~~~~lv~~~  290 (524)
T PF05977_consen  212 RYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGA-LLLPRLRRRLSSRRLVLLA  290 (524)
T ss_pred             HHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHH-HHHHHhhcccCcchhhHHH
Confidence            888888888887777777777777778889999999999999999999999999999999 7889999999999998889


Q ss_pred             HHHHHHHHHHHHhcCcchHHHH-HHHHHHhhhc
Q 018388          320 LFAACINMFICSISWSAWVPYA-TTAFSVLVVF  351 (357)
Q Consensus       320 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~  351 (357)
                      .+..+++.+.+++.++.+.... ..+.|++...
T Consensus       291 ~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~  323 (524)
T PF05977_consen  291 SLLFALALLLLALSPSFWLALIALFLAGAAWII  323 (524)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            9888888888888887776555 3444555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.2e-27  Score=204.32  Aligned_cols=273  Identities=15%  Similarity=0.199  Sum_probs=213.9

Q ss_pred             chhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhh
Q 018388            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (357)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l   84 (357)
                      +..+.+.++++...+...+.+.+..+++...+        .++++....|++++.+.+.+.+.+|+.|+++|||+||+++
T Consensus        30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~--------~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~  101 (493)
T KOG1330|consen   30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQT--------YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI  101 (493)
T ss_pred             cchHHHHHHHHHHHHHHhhhhhhhhhhHHHHH--------hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE
Confidence            34566778888888999998887776666543        4566667779999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh
Q 018388           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (357)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  164 (357)
                      .+|..++.++.++++++..   +|++.++|.+.|+ +.+...|+.+++++|.+|+++|++.+++++....+|..+|-+.+
T Consensus       102 ~vG~~iW~~Av~~~~fs~~---Fwq~~l~R~~vGi-GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvg  177 (493)
T KOG1330|consen  102 AVGIFIWTLAVFASGFSNH---FWQVLLCRGFVGI-GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVG  177 (493)
T ss_pred             eeHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcc-chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEee
Confidence            9999999999999999987   9999999999999 88888899999999999999999999999999999998887776


Q ss_pred             HHh-----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHH
Q 018388          165 RFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (357)
Q Consensus       165 ~~l-----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (357)
                      ...     .|||.|+..+++++++.++..++.+|+++...++.|.                   ..+........+||.+
T Consensus       178 s~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~-------------------~~~~~~~~ts~~kDl~  238 (493)
T KOG1330|consen  178 SVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDG-------------------ENKMVKPFTSVWKDLK  238 (493)
T ss_pred             eeeccCccceEEEEEeehHHHHHHHHHHHhhccCccccccccccc-------------------CCcCCCCccchHHHHH
Confidence            654     4999999999999999999888888877643332110                   0000112223455543


Q ss_pred             HhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhh---cccCcchHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 018388          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ---FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL  310 (357)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  310 (357)
                       .+.+++.+....+......+..+.+.-|.|.+....   .|.+..+..++..+...++.++. +++|.++||+
T Consensus       239 -~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGv-l~Ggiisd~~  310 (493)
T KOG1330|consen  239 -VLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGV-LFGGIISDKL  310 (493)
T ss_pred             -HHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhh-eehHHHHHHH
Confidence             344467777777777777777777777777655443   34555555566666667777776 8888888884

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.95  E-value=2.3e-25  Score=196.12  Aligned_cols=277  Identities=23%  Similarity=0.323  Sum_probs=233.7

Q ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHH
Q 018388           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (357)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~   91 (357)
                      .+....+...++.....+..|.+.++        .+.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~   74 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAED--------LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLF   74 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHH
Confidence            45667778888888899999998864        2445567899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----
Q 018388           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (357)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----  167 (357)
                      .++......+++   ++.+++.|++.|+ +.+...+...+++.|+.|+|+|++.+++.+....+|..++|.+++.+    
T Consensus        75 ~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  150 (352)
T cd06174          75 ALGSLLLAFASS---LWLLLVGRFLLGL-GGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL  150 (352)
T ss_pred             HHHHHHHHHhcc---HHHHHHHHHHHHc-ccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999988   8899999999999 77777899999999999999999999999999999999999988875    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccc
Q 018388          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (357)
Q Consensus       168 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (357)
                      +||+.+++.+++.++..+...+ .+                                                     |.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~-~~-----------------------------------------------------~~  176 (352)
T cd06174         151 GWRWLFLILAILGLLLALLLLF-LL-----------------------------------------------------RL  176 (352)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HH-----------------------------------------------------HH
Confidence            6999999888776665554433 33                                                     23


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhH-HHHHHHHHHHHH
Q 018388          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK-LLSLGLFAACIN  326 (357)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~i~  326 (357)
                      ++...+..++..........+.|.+.++.+|.++.+.+.......++..++. ++.+++.||+++|+ .+..+..+..++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~  255 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGA-LLGGLLSDRLGRRRLLLLIGLLLAALG  255 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4455666777777888889999999998889999999999999999999998 88899999999999 999999999999


Q ss_pred             HHHHHhcCcchHHHH-HHHHHHhhhccccc
Q 018388          327 MFICSISWSAWVPYA-TTAFSVLVVFATPS  355 (357)
Q Consensus       327 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~  355 (357)
                      .+.+...++.+..+. ..+.+.+.+...|.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  285 (352)
T cd06174         256 LLLLALAPSLALLLVALLLLGFGLGFAFPA  285 (352)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhccchh
Confidence            888887776555444 45667776666553

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.95  E-value=3.2e-25  Score=204.49  Aligned_cols=302  Identities=16%  Similarity=0.191  Sum_probs=209.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.+..+++..++..++.....+.+|.+.+        +++.+..+.+++.+.+.++..++.++.|+++||+|||+.+..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   90 (496)
T PRK03893         19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQG--------EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI   90 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            345667788888889999999988888765        345666778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      +.++..++.+++.++++   ++.+++.|++.|+ +.+...+....++.|.+|+|+|+++++.......+|..++|.+++.
T Consensus        91 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  166 (496)
T PRK03893         91 SIVLFSVGTLACGFAPG---YWTLFIARLVIGM-GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSL  166 (496)
T ss_pred             HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988   8889999999999 6677778899999999999999999999999999999999988877


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHH------
Q 018388          167 L----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR------  236 (357)
Q Consensus       167 l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  236 (357)
                      +    +||+.|++.++. .+..+......||+++.++++.+....    .+..+..      .....+......      
T Consensus       167 l~~~~~w~~~f~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~~~------~~~~~~~~~~~~~~~~~~  235 (496)
T PRK03893        167 VVPVWGWRALFFIGILP-IIFALWLRKNLPEAEDWKEKHAGKAPV----RTMVDIL------YRGEHRIINILLTLAAAA  235 (496)
T ss_pred             HhccCCHHHHHHHHHHH-HHHHHHHHHhCCCchhhhhhccccccc----hhHHHHH------hcchhHHHHHHHHHHHHH
Confidence            5    899999875443 332333334456544322111000000    0000000      000000000000      


Q ss_pred             ---HHHHh-------------------------hh-cccc-hHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHH
Q 018388          237 ---DLICL-------------------------LR-SSVT-LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFAD  286 (357)
Q Consensus       237 ---~~~~~-------------------------~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  286 (357)
                         .....                         .. +++. ........+...........++|.|+++.+|++..+.+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~  315 (496)
T PRK03893        236 ALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVAN  315 (496)
T ss_pred             HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHH
Confidence               00000                         00 0000 001111111111111234678999998778999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHh
Q 018388          287 LMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI  332 (357)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  332 (357)
                      +.+...++..++. ++.+++.||+++|+.+..+..+..+..+....
T Consensus       316 ~~~~~~~~~~~g~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~  360 (496)
T PRK03893        316 VLFFSGFGAAVGC-CVGGFLGDWLGTRKAYVCSLLISQLLIIPVFA  360 (496)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh
Confidence            9999999999988 88899999999999888777666655544433

>TIGR00898 2A0119 cation transport protein

Probab=99.95  E-value=1.9e-26  Score=213.04  Aligned_cols=280  Identities=18%  Similarity=0.152  Sum_probs=199.3

Q ss_pred             CccchhH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhh
Q 018388           43 LDECSLA---IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAM  119 (357)
Q Consensus        43 ~~~~~~s---~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~  119 (357)
                      .+|++++   ..+.|+..+++.++..+++++.|+++||+|||++++.+.++..++.++.+++++   ++.+++.|++.|+
T Consensus       116 ~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~r~l~G~  192 (505)
T TIGR00898       116 VTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN---YTVFLVFRLLVGM  192 (505)
T ss_pred             EEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHh
Confidence            3466777   788999999999999999999999999999999999999999999999999999   8999999999999


Q ss_pred             cccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-hhHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 018388          120 VCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-STTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (357)
Q Consensus       120 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~  198 (357)
                       +.+...+...+++.|++|+++|+++.++...+..+|.+++|.++..+ +||+.+++.++..++..+.. +++||++++.
T Consensus       193 -~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~-~~~~esp~~l  270 (505)
T TIGR00898       193 -GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLS-WFVPESPRWL  270 (505)
T ss_pred             -hccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HhcCCChHHH
Confidence             77777789999999999999999999999999999999999988776 79999999988866655554 6789987643


Q ss_pred             CCCCCCcccccccc---cccccCCCC----CC-CCc-cccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHH
Q 018388          199 DDDDLTRPIITEET---EGVNQNESN----SP-VKI-PVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASF  269 (357)
Q Consensus       199 ~~~~~~~~~~~~~~---~~~~~~~~~----~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (357)
                      ..+.+.++..+..+   +.++....+    .. .++ .+.+++...+    .++++|.++...+......+.....+..+
T Consensus       271 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (505)
T TIGR00898       271 ISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFL----DLFRTPNLRKTTLCLMMLWFTTAFSYYGL  346 (505)
T ss_pred             HHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHH----HHhCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22221111111100   000000000    00 000 0001111222    24557777776666655555544444444


Q ss_pred             HHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCcc
Q 018388          270 LYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSA  336 (357)
Q Consensus       270 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  336 (357)
                      +.+..+ .+.+.   .......++..+++. ++.+++.||+|||+.+..+..+.+++++++.+.++.
T Consensus       347 ~~~~~~-~~~~~---~~~~~~~~~~~i~~~-~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~  408 (505)
T TIGR00898       347 VLDLGN-LGGNI---YLDLFISGLVELPAK-LITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVD  408 (505)
T ss_pred             hccccc-cCCCh---HHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            444443 35443   233344555666666 788999999999999999998888888777776543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.95  E-value=1.6e-25  Score=199.24  Aligned_cols=292  Identities=12%  Similarity=0.019  Sum_probs=211.8

Q ss_pred             HHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcc----hhhhHHHHHH
Q 018388           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK----AMLTLPLTLS   91 (357)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk----~~l~~~~~~~   91 (357)
                      ..+...++.++..|.+|.+.+|        .+.+..+.|++.+++.++..++++++|+++||+|||    +.+.+.... 
T Consensus        12 ~~~~~~~~~g~~~p~l~~~l~~--------~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~-   82 (382)
T PRK11128         12 SYFGYFFAYGVFLPFWSVWLKG--------QGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL-   82 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHh--------cCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH-
Confidence            3556667789999999999874        456678889999999999999999999999999994    333222221 


Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----
Q 018388           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (357)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----  167 (357)
                       ........+++   +|.+++.|++.|+ +.+...|...++..++  +++|+++.+......++|..+||.+++++    
T Consensus        83 -~~~~~~~~~~~---~~~l~i~~~l~g~-~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~  155 (382)
T PRK11128         83 -FAVAFWFGAHS---FWLLFVAIGLFNL-FFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF  155 (382)
T ss_pred             -HHHHHHHhccc---HHHHHHHHHHHHH-HHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence             12223334567   8888899999998 5566667888888876  46688888889988999999999999875    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccc
Q 018388          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (357)
Q Consensus       168 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (357)
                      +||..|++.++..++..+ ..+..||++++++++                   + +    .++..++.+    .++|+|+
T Consensus       156 g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------------~-~----~~~~~~~~~----~i~~~~~  206 (382)
T PRK11128        156 GEQAILWILTAGVASMLL-GQLLRPTIMPQGESR-------------------Q-Q----ESAGWPAWK----ALLKEPT  206 (382)
T ss_pred             ChhHHHHHHHHHHHHHHH-HHHccCCCCCccccc-------------------c-c----cccccchHH----HHHcChh
Confidence            899999887765444333 233344432211110                   0 0    000011222    3556888


Q ss_pred             hHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHH
Q 018388          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (357)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~  327 (357)
                      ++...+..++.........++.|.|.+| .|.++.+.|.+.+...+...+.. ++.+++.||+++|+.+..+....+++.
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~l~~~~~~~~~~~  284 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIF-AFSNRLFRRWSARDLLLLSAICGVVRW  284 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            8888887777777777788889999977 59999999999998888777777 888999999999999999998888888


Q ss_pred             HHHHhcCcchHHHH-HHHHHHhhhcccc
Q 018388          328 FICSISWSAWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       328 ~~~~~~~~~~~~~~-~~~~~~~~~~~~p  354 (357)
                      +++...++.+..+. ..+.+++.+...|
T Consensus       285 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~  312 (382)
T PRK11128        285 GLMGSTTALPWLIVIQILHCGTFTVCHL  312 (382)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            77777777665554 4555666655444

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.95  E-value=1.8e-25  Score=225.61  Aligned_cols=317  Identities=15%  Similarity=0.118  Sum_probs=225.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh
Q 018388            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (357)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~   85 (357)
                      +.+.+..+++..++..++.......+..+.....     +.+.+....+++.+++.++..++++++|+++||+|||++++
T Consensus         7 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~   81 (1146)
T PRK08633          7 KIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAY-----DGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIR   81 (1146)
T ss_pred             hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHH
Confidence            4556667777777766666544444443433321     12233456799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH---ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHh
Q 018388           86 LPLTLSIIPLAILAY---RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (357)
                      .+.++..+..++..+   +++   ++.+++.|+++|+ +.+...+...+++.|++|+++|++++++.+.+..+|.++||.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~  157 (1146)
T PRK08633         82 IVKLFEVGLTLLIVLAYYLGW---FWLAFAVTFLLGA-QSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTA  157 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHH-HHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHH
Confidence            888776665554443   456   8899999999999 778888999999999999999999999999999999999999


Q ss_pred             hhHHhh-------------hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCcccc
Q 018388          163 AARFLS-------------TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVC  229 (357)
Q Consensus       163 ~~~~l~-------------~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (357)
                      +++++.             |++.+.+..+...+..++..+.+||.++....+.+                      +...
T Consensus       158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~  215 (1146)
T PRK08633        158 LFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFD----------------------KKKY  215 (1146)
T ss_pred             HHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccc----------------------cccc
Confidence            988762             23333333333233333334456766543222100                      0000


Q ss_pred             ccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcc-hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018388          230 KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN-QFADLMLIAGLAGTISQLLFMPLLAP  308 (357)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~  308 (357)
                      ......++.++.+++++.++...+..++..........++|.|+++.+|++.. ..+++.+..+++.+++. ++.+++.|
T Consensus       216 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~-~~~g~l~~  294 (1146)
T PRK08633        216 LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGS-LLAGRLSG  294 (1146)
T ss_pred             ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHhC
Confidence            11112233345566788888777777777777777888999999998899998 88999999999988888 88899999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhcCcchHHHH-HHHHHHhhhcccc
Q 018388          309 ILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       309 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p  354 (357)
                      |+++++.+.++.++.+++.+++.+..+.+...+ ..+++++.+...+
T Consensus       295 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  341 (1146)
T PRK08633        295 RHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIV  341 (1146)
T ss_pred             CceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Confidence            999988888888888777777776665544433 4555666555443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.95  E-value=5.1e-25  Score=197.01  Aligned_cols=275  Identities=15%  Similarity=0.068  Sum_probs=193.6

Q ss_pred             HHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHH
Q 018388           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (357)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~   97 (357)
                      +++.++.....+..+.+.++...+ .++...+........+...++..+++++.|+++||+|||+++..+.++..++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~   81 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPP-SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL   81 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCC-CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            345667777777767766663221 1122222222233344455666689999999999999999999999999999999


Q ss_pred             HHHccchhH-----HHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH------
Q 018388           98 LAYRRSISF-----FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF------  166 (357)
Q Consensus        98 ~~~~~~~~~-----~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~------  166 (357)
                      +++++++..     .+.+++.|+++|+ +.+...+...+++.|+.|+|+|++..+..+....+|..+++.++..      
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  160 (394)
T TIGR00883        82 IGLLPSYATIGIWAPILLLLARLIQGF-SLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG  160 (394)
T ss_pred             HhhCCChhhhHHHHHHHHHHHHHHHHh-hccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999988321     1257889999999 6677778899999999999999999999999999999999876543      


Q ss_pred             ------hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHH
Q 018388          167 ------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (357)
Q Consensus       167 ------l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (357)
                            .+||+.|++.+++.++.. ......||+++.++++++                        +++...+.++   
T Consensus       161 ~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~---  212 (394)
T TIGR00883       161 DDALLEWGWRIPFLVSAVLVLIGL-YLRRNLEETPVFEKAQEK------------------------HKKKRGPIRE---  212 (394)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHH-HHHHhcCCChhHHHHHhc------------------------cccccCCHHH---
Confidence                  379999988776644433 333445655432221100                        0001112222   


Q ss_pred             hhhccc-chHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHH
Q 018388          241 LLRSSV-TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (357)
Q Consensus       241 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (357)
                      .+++++ .++......++..........++|.|.++.+|.++.+.+.......+...++. ++.+++.||+++|+.+...
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~  291 (394)
T TIGR00883       213 TLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITI-PLSGALSDRIGRRPVLIIF  291 (394)
T ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHHH
Confidence            122222 35666666666667777778899999988889999999999988888888888 8889999999999877655


Q ss_pred             HHHH
Q 018388          320 LFAA  323 (357)
Q Consensus       320 ~~~~  323 (357)
                      ..+.
T Consensus       292 ~~~~  295 (394)
T TIGR00883       292 TVLA  295 (394)
T ss_pred             HHHH
Confidence            4443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.95  E-value=1.7e-26  Score=192.00  Aligned_cols=309  Identities=17%  Similarity=0.243  Sum_probs=207.5

Q ss_pred             HhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHH
Q 018388           28 VPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFF  107 (357)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~  107 (357)
                      .|.......++.....++.+.+....|++.+.+++.+++.++.+|.++||+|||++++.|++..++...+.+.++|   +
T Consensus        45 ~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~---F  121 (451)
T KOG2615|consen   45 YPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN---F  121 (451)
T ss_pred             hHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            3344444444322223344466788999999999999999999999999999999999999999999999999999   8


Q ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHhhh------HHHHHH----HH
Q 018388          108 YAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST------TSAFQA----AT  177 (357)
Q Consensus       108 ~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------~~~f~~----~~  177 (357)
                      ..+.+.|++.|+ .-|.. ....++++|+.++|+|+++++..+..+++|.++||.+||++..      +.+|..    ..
T Consensus       122 ~afv~aR~l~Gi-~kgnl-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~  199 (451)
T KOG2615|consen  122 AAFVLARFLGGI-FKGNL-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVF  199 (451)
T ss_pred             HHHHHHHHhhhh-ccCch-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHH
Confidence            667777999999 66777 6899999999999999999999999999999999999999744      222332    22


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccc-------hHH
Q 018388          178 IVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT-------LSQ  250 (357)
Q Consensus       178 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  250 (357)
                      +..........+++||+-+.+++.++..+..+...+             ..+..+.+.......+ ||+.       ...
T Consensus       200 i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~-------------~~~~~~~~~~~~v~~l-rn~p~~~~i~~~~i  265 (451)
T KOG2615|consen  200 ILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADD-------------RLALLKFARIFKVAAL-RNPPLLDFISVLRI  265 (451)
T ss_pred             HHHHHHHHHHHHhCCccccchhhcccccchhhhhhh-------------hhhhcchhhhhhhhhh-cCccccchHHHHHH
Confidence            222221233446789986655543110000000000             0000000001101111 1222       223


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccc--hhHHHHHHHHHHHHHHH
Q 018388          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG--EAKLLSLGLFAACINMF  328 (357)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~i~~~  328 (357)
                      ..+..+.+...+.....+.+.+..+.+|+++.+.|.+++..++.+.+.+ ....+..+|..  .+..+..+..++.-.++
T Consensus       266 ~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~q-l~~~~~l~~~~~~~~a~l~~~l~~~vP~~l  344 (451)
T KOG2615|consen  266 FGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQ-LALVPILPRYKGNIKAVLLFSLLLIVPAFL  344 (451)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHH-HhccccccccccchhhHHHHHHHHHHHHHH
Confidence            4445555555556666666666678899999999999999999999998 44445556555  45566777777777777


Q ss_pred             HHHhcCcchHHHHH-HHHHHhhhcccccC
Q 018388          329 ICSISWSAWVPYAT-TAFSVLVVFATPSV  356 (357)
Q Consensus       329 ~~~~~~~~~~~~~~-~~~~~~~~~~~p~~  356 (357)
                      ++........++.. .+..+..+...|++
T Consensus       345 lls~~~~~~~l~~~s~l~sf~~A~~vt~L  373 (451)
T KOG2615|consen  345 LLSLARTPVVLYLGSTLKSFSTASVVTCL  373 (451)
T ss_pred             HHhccccchhhhHHHHHHHHHHHHhhHHH
Confidence            77777776666663 44455555555543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=6.5e-26  Score=211.80  Aligned_cols=298  Identities=12%  Similarity=0.145  Sum_probs=215.7

Q ss_pred             HHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHH
Q 018388           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL   95 (357)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~   95 (357)
                      ..+...+..+...+.++.+.+        +++++..+.|++.+.+.+++.++.++.|++.||+|||+.+.++.++.++++
T Consensus        41 ~~~~~~~~~g~~~~~l~~iek--------~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~  112 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSLTTIER--------RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS  112 (633)
T ss_pred             HHHHHHHHHHHHHhhchhhhh--------hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence            444444555666677776644        566777788999999999999999999999999999999999999999999


Q ss_pred             HHHHHccc------------------------------------------------hhHHHHHHHHHHHhhhcccchHHH
Q 018388           96 AILAYRRS------------------------------------------------ISFFYAYYALRTLTAMVCEGSINC  127 (357)
Q Consensus        96 ~~~~~~~~------------------------------------------------~~~~~~~~~~r~l~G~~~~~~~~~  127 (357)
                      +++++.+-                                                ...+..++++|+++|+ +.+...+
T Consensus       113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~Gi-G~~~~~~  191 (633)
T TIGR00805       113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGI-GATPIFP  191 (633)
T ss_pred             HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhc-cCCcchh
Confidence            99887630                                                0024567899999999 7788889


Q ss_pred             HHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh--------------------------hhHHHHHHHHHHHH
Q 018388          128 LALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--------------------------STTSAFQAATIVSM  181 (357)
Q Consensus       128 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--------------------------~~~~~f~~~~~~~~  181 (357)
                      ...+++.|++|+++|++.+++......+|..+|+++++++                          +||..|++.+++.+
T Consensus       192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~  271 (633)
T TIGR00805       192 LGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL  271 (633)
T ss_pred             cCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888763                          16677888887766


Q ss_pred             HHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHh
Q 018388          182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLS  261 (357)
Q Consensus       182 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (357)
                      +..+. ++.+|++.++++.+.+.+. .   +.+ ..++.+.+.+........+..+..+.+.++|.++...+..++....
T Consensus       272 l~~v~-l~~~p~~lp~~~~~~~~~~-~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~  345 (633)
T TIGR00805       272 LTSIP-FFFFPKALPKEGKRVNVDV-H---ETE-KLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLA  345 (633)
T ss_pred             HHHHH-HHhCccccCCcccccchhh-h---hhh-cccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            65554 4456665432211100000 0   000 0000000000000011112222344466799999999999999999


Q ss_pred             hhhhhHHHHHhhhhhcccCcchHHHHHHHHHHH-HHHHHHHHHhhhhhccc--hhHHHHHHHHHHHHHHHH
Q 018388          262 EGGMQASFLYFLKAQFHFNKNQFADLMLIAGLA-GTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFI  329 (357)
Q Consensus       262 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~i~~~~  329 (357)
                      ..++.+++|.|+++.+|+++.+++.+.....+. .+++. +++|++.||++  .|+.+..+.....++.+.
T Consensus       346 ~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~-~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       346 FNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGY-LIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHH-hhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988877764 45555 89999999988  467777777777666444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.95  E-value=3.5e-25  Score=222.82  Aligned_cols=290  Identities=11%  Similarity=0.061  Sum_probs=207.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.+..++...++..++.++....++.+....+  ..+...-.....++..+++.+++.++++++|+++||+|||+++..
T Consensus        10 ~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~   87 (1140)
T PRK06814         10 SRRFAPLFWTQFFGAFNDNFLKNALVILILYGL--SGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKI   87 (1140)
T ss_pred             ccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh--ccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHH
Confidence            445666777778877776655444333322211  111111233457889999999999999999999999999997643


Q ss_pred             ---HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhh
Q 018388           87 ---PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (357)
Q Consensus        87 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  163 (357)
                         ..+...+........++   ++.++++|+++|+ +.+...|+..+++.|++|+++|++++++.+++.++|.++||.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~s---~~~l~~~~~l~gi-~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l  163 (1140)
T PRK06814         88 LKFAEIGIAALAIYGFHLNS---VPLLFAALFLMGI-HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTII  163 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHH-HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHH
Confidence               22222222233333467   8999999999999 7788889999999999999999999999999999999999999


Q ss_pred             hHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHH
Q 018388          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (357)
Q Consensus       164 ~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (357)
                      ++++    +|++.|+..++. .+..++..+.+|++++.++...                        ...+......+.+
T Consensus       164 ~g~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~  218 (1140)
T PRK06814        164 GGLATISGNFVILVALLMGI-AVLGWLASLFIPKTGNAAPDLK------------------------IDRNIIRSTITLL  218 (1140)
T ss_pred             HHHHHhccccHHHHHHHHHH-HHHHHHHHhhCCCCCCCCCCCe------------------------eccchHHHHHHHH
Confidence            9986    788888444444 3333444555666543222110                        0000111223445


Q ss_pred             HhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHH
Q 018388          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (357)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (357)
                      +.+++++.++...+..++..+.......++|.|+++.+|.++...|.+.+..+++.++++ ++.+++.|+..+++.+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~-~~~g~l~~~~~~~~~~~~~  297 (1140)
T PRK06814        219 KYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGS-FLASKLSEGRITLLYVPIG  297 (1140)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHH-HHHHHHhCCceeeeeehHH
Confidence            567788999998888888888888888999999999999999999999999999999998 8889999877766655555


Q ss_pred             HHHHHHHHH
Q 018388          320 LFAACINMF  328 (357)
Q Consensus       320 ~~~~~i~~~  328 (357)
                      .++.++..+
T Consensus       298 ~~~~~~~~~  306 (1140)
T PRK06814        298 ALLMGLFGL  306 (1140)
T ss_pred             HHHHHHHHH
Confidence            555544443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.95  E-value=1.3e-24  Score=194.59  Aligned_cols=300  Identities=12%  Similarity=0.058  Sum_probs=208.7

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      |.++.+....++...+.....|.+|.+..+       +.+.+..+.|++.+++.++..++++++|+++||+|||+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~   74 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHD-------VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWI   74 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            456777788888999999999999999875       3466677889999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHH---HHccc--hhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHh
Q 018388           88 LTLSIIPLAIL---AYRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (357)
Q Consensus        88 ~~~~~~~~~~~---~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (357)
                      .....+.....   .+.+.  ...+....+.+++.|+ +.+...+....+..|..+  ++++..+......++|..+||.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~  151 (396)
T TIGR00882        75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGF-VFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCAS  151 (396)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHH
Confidence            76655443322   12221  0113345667888888 556666777777777543  3445667777888899999999


Q ss_pred             hhHHh---hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHH
Q 018388          163 AARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (357)
Q Consensus       163 ~~~~l---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (357)
                      +++.+   +||.+|++.+.+.++..++.+...||++++++.+ +              + .+   .++   ++++.++..
T Consensus       152 ~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------~-~~---~~~---~~~~~~~~~  209 (396)
T TIGR00882       152 IAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVA-N--------------A-LG---ANA---SAFSLKLAL  209 (396)
T ss_pred             HHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhh-c--------------c-cc---ccc---CCCCHHHHH
Confidence            98875   8999999988887766555444444432211110 0              0 00   000   011123333


Q ss_pred             HhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhc---ccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHH
Q 018388          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF---HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (357)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (357)
                      + +.|+|.++...+..+...........+.+.|.++.+   +.+....|...+...+...++. ...+++.||+++|+.+
T Consensus       210 ~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~-~~~g~l~~r~g~~~~l  287 (396)
T TIGR00882       210 E-LFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIM-FCAPLIINRIGAKNAL  287 (396)
T ss_pred             H-HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhH
Confidence            3 345777766666665555555566667888887764   4455667888888888888887 7889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcchHHHH
Q 018388          317 SLGLFAACINMFICSISWSAWVPYA  341 (357)
Q Consensus       317 ~~~~~~~~i~~~~~~~~~~~~~~~~  341 (357)
                      ..+..+.++...+....++.+..+.
T Consensus       288 ~~~~~l~~l~~~~~~~~~~~~~~~~  312 (396)
T TIGR00882       288 LIAGTIMSVRIIGSSFATTALEVVI  312 (396)
T ss_pred             HHHHHHHHHHHHHHHhcCChHHHHH
Confidence            9988888887777666666655443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.95  E-value=1.6e-24  Score=196.77  Aligned_cols=294  Identities=11%  Similarity=0.066  Sum_probs=199.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHH-HHHHhhhcccc
Q 018388           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYA-LRTLTAMVCEG  123 (357)
Q Consensus        45 ~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~~~~  123 (357)
                      +++.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..++.++++++++   ++.+++ .|+++|+ +.+
T Consensus        48 ~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~l~G~-~~~  123 (455)
T TIGR00892        48 IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSN---VIELYLTAGFITGL-GLA  123 (455)
T ss_pred             HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHh-cch
Confidence            45666677899999999999999999999999999999999999999999999999988   776654 5789999 656


Q ss_pred             hHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 018388          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (357)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~  199 (357)
                      ...+...+++.++++ ++|+++.++.+.+..+|..++|.+++.+    +||+.|++.+++.++..+..++..|+.+.++.
T Consensus       124 ~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~  202 (455)
T TIGR00892       124 FNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRV  202 (455)
T ss_pred             hhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence            555667788889885 7899999999999999999998887764    89999999988866655544444333221111


Q ss_pred             CCCCCcccccccccccccCCCCCC-CCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcc
Q 018388          200 DDDLTRPIITEETEGVNQNESNSP-VKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH  278 (357)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  278 (357)
                      .+.+.+       +..+.+...++ ..+...++..+..+ .+ ..++|+++......++..........++|.|.++. |
T Consensus       203 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~-g  272 (455)
T TIGR00892       203 SKSKSK-------EGLPPDGSTKKLSKKSTAEKINRFLD-FS-LFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDK-G  272 (455)
T ss_pred             cccccc-------ccCCCCCccccccccchhhhhhhhcc-hH-HhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHc-C
Confidence            000000       00000000000 00000000001111 12 34578888887777777777778888999999874 9


Q ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHhhhhhc--cchhHHHH--HHHHHHHHHHHHHHhcCcchHHHH-HHHHHHhhhccc
Q 018388          279 FNKNQFADLMLIAGLAGTISQLLFMPLLAPI--LGEAKLLS--LGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFAT  353 (357)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  353 (357)
                      ++..+.+...+..+++..+++ ++.+++.||  .++++...  .+....+++.++....++.+..+. ..+.+++.+...
T Consensus       273 ~s~~~~g~~~~~~~~~~~~~~-~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~  351 (455)
T TIGR00892       273 VDEYEAAFLLSIIGFVDIFAR-PSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVG  351 (455)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHH
Confidence            999999999999999988888 788899987  33343333  233333444444455555554443 455566665544


Q ss_pred             c
Q 018388          354 P  354 (357)
Q Consensus       354 p  354 (357)
                      |
T Consensus       352 ~  352 (455)
T TIGR00892       352 A  352 (455)
T ss_pred             H
Confidence            4

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.94  E-value=9.5e-25  Score=196.89  Aligned_cols=310  Identities=12%  Similarity=0.033  Sum_probs=203.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.++.+.+..++..++.+...|.+|.++++       +++.+..+.|++.+++.++..++++++|+++||+|||++++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~   81 (420)
T PRK09528          9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHD-------INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLW   81 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            5567777888888889889999999999875       456777889999999999999999999999999999999987


Q ss_pred             HHHHHHHHHHHHH---Hccch--hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhH
Q 018388           87 PLTLSIIPLAILA---YRRSI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (357)
Q Consensus        87 ~~~~~~~~~~~~~---~~~~~--~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  161 (357)
                      +..+..+......   .++..  ..+....++++..|. +.....+....+..+.  .+++++.++......++|..++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~  158 (420)
T PRK09528         82 IISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGF-GFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCA  158 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHH
Confidence            7665554432211   11110  001112333444443 2222223333333222  24567788888888999999999


Q ss_pred             hhhHHh---hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHH
Q 018388          162 LAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (357)
Q Consensus       162 ~~~~~l---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (357)
                      .+++.+   +|+++|++.+++.++..+..++..||++++++.+ +               +++   +   .+++.+.++.
T Consensus       159 ~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~---~---~~~~~~~~~~  216 (420)
T PRK09528        159 FIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA-N---------------ALG---A---NASAVSLKDA  216 (420)
T ss_pred             HHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccchhhhc-c---------------chh---c---ccccccHHHH
Confidence            998876   7899999888776665555444444432211110 0               000   0   0011123343


Q ss_pred             HHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhc---ccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHH
Q 018388          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF---HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (357)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (357)
                      .+ ..|+|.++...+..+...........+.|.|..+.+   +.+..+.|.+.+...+...++. +..+++.||+++|+.
T Consensus       217 ~~-~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~  294 (420)
T PRK09528        217 LA-LLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIM-FFAPFIINRIGAKNA  294 (420)
T ss_pred             HH-HccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcchh
Confidence            33 334676666555555554555555566777776543   4555677888888888888887 888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcchHHHH-HHHHHHhhh
Q 018388          316 LSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVV  350 (357)
Q Consensus       316 ~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~  350 (357)
                      +..+..+.+++..++.+.++.+..+. ..+.+.+.+
T Consensus       295 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~  330 (420)
T PRK09528        295 LLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVP  330 (420)
T ss_pred             hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            99988888888888887777665544 233344433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.94  E-value=7.7e-24  Score=193.63  Aligned_cols=280  Identities=14%  Similarity=0.127  Sum_probs=198.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-----Ccc
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRK   81 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----Grk   81 (357)
                      +|+...++...+..+.......+.+|.+.++.        +.+..+.|.. +...... ++.+++|+++||+     |||
T Consensus        11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~--------g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grr   80 (491)
T PRK11010         11 QPNSAILLILGFASGLPLALTSGTLQAWMTVE--------NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRR   80 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCc
Confidence            34456677777788888889999999998752        3444455664 2333333 6889999999999     999


Q ss_pred             hh-hhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhh
Q 018388           82 AM-LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (357)
Q Consensus        82 ~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  160 (357)
                      |. +..+.+...++...+++.+....++.+.+.+++.++ +.+...+...+++.|++|+|||+++.++...+..+|.+++
T Consensus        81 r~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~-~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg  159 (491)
T PRK11010         81 RGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAF-CSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVS  159 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence            86 557777777777777776433337888889999998 6677778899999999999999999999999999999999


Q ss_pred             HhhhHH-----hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhH
Q 018388          161 TLAARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSI  235 (357)
Q Consensus       161 ~~~~~~-----l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (357)
                      +.++..     .|||..|++.+++.++..+.. +..||+++.++++                   +   + ..++..+++
T Consensus       160 ~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~-~~~~e~~~~~~~~-------------------~---~-~~~~~~~~l  215 (491)
T PRK11010        160 GGLALWLADRYLGWQGMYWLMAALLIPCIIAT-LLAPEPTDTIPVP-------------------K---T-LEQAVVAPL  215 (491)
T ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCccccccc-------------------c---c-hhhhHHHHH
Confidence            866654     389999999988766654443 3467754321110                   0   0 000001122


Q ss_pred             HHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHH-HHHHHHHHHHHHhhhhhccchhH
Q 018388          236 RDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA-GLAGTISQLLFMPLLAPILGEAK  314 (357)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~  314 (357)
                      ++    +++++..+...+..++..........+.+.|+.+..|+++.+.+...... .++.+++. ++.|++.||+++|+
T Consensus       216 ~~----~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~-ll~G~L~dr~g~~~  290 (491)
T PRK11010        216 RD----FFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGA-LYGGILMQRLSLFR  290 (491)
T ss_pred             HH----HHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHH
Confidence            22    33456666555555666666666777888888777799999999987544 45667776 89999999999988


Q ss_pred             HHHHHHHHHHHH
Q 018388          315 LLSLGLFAACIN  326 (357)
Q Consensus       315 ~~~~~~~~~~i~  326 (357)
                      .+..+..+.++.
T Consensus       291 ~l~i~~~l~~l~  302 (491)
T PRK11010        291 ALMIFGILQGVS  302 (491)
T ss_pred             HHHHHHHHHHHH
Confidence            777666554444

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=8e-24  Score=178.40  Aligned_cols=308  Identities=17%  Similarity=0.118  Sum_probs=250.6

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      .+..+....++.++......+.+|.+.+        .++++..+.++++..+..++.+.+++.|++.+|+|+|+-+++++
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~--------~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL   85 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKE--------VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGL   85 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHH--------HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHH
Confidence            4455556666777777888888888866        56778888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-
Q 018388           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (357)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-  167 (357)
                      .+.++++.+..-+.+...+..++++-++.|. +.+...+....+++...++++-.+.+++.+..+++|.++||.+++.+ 
T Consensus        86 ~l~avg~~lF~pAa~~~~y~~FL~~lFila~-Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~li  164 (422)
T COG0738          86 LLYAVGAALFWPAASSKSYGFFLVALFILAS-GIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI  164 (422)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh-hhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            9999999998766555548888999999999 88999999999999999999999999999999999999999998764 


Q ss_pred             ----------------------hhHHHHHHHHHHHHHHHHHHHH-hccCCCCCCCCCCCCcccccccccccccCCCCCCC
Q 018388          168 ----------------------STTSAFQAATIVSMLAAAYMRV-FLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPV  224 (357)
Q Consensus       168 ----------------------~~~~~f~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (357)
                                            .++++|...+....+..+.... ..|+.++..+++                       
T Consensus       165 ls~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~-----------------------  221 (422)
T COG0738         165 LSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSL-----------------------  221 (422)
T ss_pred             HhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccc-----------------------
Confidence                                  2467777776664444333221 223322222211                       


Q ss_pred             CccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHh
Q 018388          225 KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP  304 (357)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (357)
                         . +.++.   ....++++|.++...+..|++-..+....++++.|+.|..|.+..+.++..+....+.++++ +++.
T Consensus       222 ---~-~~~~~---~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGR-Fig~  293 (422)
T COG0738         222 ---G-ASGSA---GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGR-FIGS  293 (422)
T ss_pred             ---c-ccccc---hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH-HHHH
Confidence               0 00000   12225668999999999999999999999999999999779999999999999999999999 8888


Q ss_pred             hhhhccchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhcccccC
Q 018388          305 LLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATPSV  356 (357)
Q Consensus       305 ~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  356 (357)
                      ++.+|++..+.+........+-++...++++.+.++...+++...++.+|++
T Consensus       294 ~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTI  345 (422)
T COG0738         294 ALMSRIKPEKYLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTI  345 (422)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHH
Confidence            9999999999998888888888888888888888888888999999999875

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.94  E-value=7.4e-24  Score=189.92  Aligned_cols=274  Identities=15%  Similarity=0.096  Sum_probs=199.3

Q ss_pred             HHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-----Ccch-hhhHH
Q 018388           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKA-MLTLP   87 (357)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----Grk~-~l~~~   87 (357)
                      ....+...+..+...+.+|.++++        .+.+..++|++..+...  .+..+++|+++||+     |||| .+..+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~--------~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~   74 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTV--------EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLT   74 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHH
Confidence            445566677788888999999974        36677788988666665  68999999999999     8876 67788


Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH-
Q 018388           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (357)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~-  166 (357)
                      .++.+++.....+.++...++.+++..++.++ ..+...+...+++.|+.|+|||+++.++...+.++|.++++.+++. 
T Consensus        75 ~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l  153 (402)
T PRK11902         75 QVGLAASIAAMAFCPPHAALWPLAGLAVLVAF-LSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL  153 (402)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            88888887777777443336777778777787 6677889999999999999999999999999999999998876655 


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhh
Q 018388          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (357)
Q Consensus       167 ----l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (357)
                          .+||..|++.+++.++..+. .+..||++++++++                       +    +..++.++.++.+
T Consensus       154 ~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~-----------------------~----~~~~~~~~~~~~l  205 (402)
T PRK11902        154 ADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPP-----------------------R----SLGEAVVGPLRDF  205 (402)
T ss_pred             HhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCccccccc-----------------------c----hhHHHHHHHHHHH
Confidence                38999999988876554443 45567654322111                       0    0000122223345


Q ss_pred             hcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHH-HHHHHHHHHhhhhhccchhHHHHHHHH
Q 018388          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLA-GTISQLLFMPLLAPILGEAKLLSLGLF  321 (357)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~  321 (357)
                      +|+|.++..++..++..........+.+.++.+.+|+++.+.+.+....+.. ..++. ++.+++.||+++|+.+..+..
T Consensus       206 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~-~~~g~l~~r~g~~~~l~~~~~  284 (402)
T PRK11902        206 FSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGA-LAGGTLMVRLGLYRSLMLFGV  284 (402)
T ss_pred             HhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHH
Confidence            6788888777766666555444445555666666799999999988766554 56666 888999999999888777666


Q ss_pred             HHHHHH
Q 018388          322 AACINM  327 (357)
Q Consensus       322 ~~~i~~  327 (357)
                      ...+..
T Consensus       285 ~~~l~~  290 (402)
T PRK11902        285 LQAVSN  290 (402)
T ss_pred             HHHHHH
Confidence            655543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.8e-27  Score=195.99  Aligned_cols=295  Identities=19%  Similarity=0.184  Sum_probs=234.7

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhc------------------------------------------CCCccch
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALC------------------------------------------PGLDECS   47 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~   47 (357)
                      +..+....+++.+....+.|.+|.|+.|..+                                          ....+.+
T Consensus        23 lviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~  102 (464)
T KOG3764|consen   23 LVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISLD  102 (464)
T ss_pred             EEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCcc
Confidence            3456777888888899999999999998442                                          0012344


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHH
Q 018388           48 LAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINC  127 (357)
Q Consensus        48 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  127 (357)
                      .+..++|++.+...+.+.+.+|+.|.+.||+|+|-.++++......+++++++.++   ++.++++|.+||+ +.++..+
T Consensus       103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s---y~~l~vAR~LQgv-gsA~~~t  178 (464)
T KOG3764|consen  103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS---YPMLFVARSLQGV-GSAFADT  178 (464)
T ss_pred             ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch---hHHHHHHHHHhhh-hHHHHHh
Confidence            55678899999999999999999999999999999999999999999999999999   8999999999999 7788889


Q ss_pred             HHHHHHhhCCCcc-chhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 018388          128 LALAYVADNISER-QRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDD  202 (357)
Q Consensus       128 ~~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~  202 (357)
                      +..++++|.+|+| +|++++|+...+.++|-++||.+||.+    |.+.+|++.+++.++...+-++.++.++.+++.. 
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~-  257 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDST-  257 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcccc-
Confidence            9999999999965 589999999999999999999999986    8899999999998888777666665443332111 


Q ss_pred             CCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcc
Q 018388          203 LTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN  282 (357)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  282 (357)
                                                 .+..++.+    +.++|..+.........+.........++.+..|.+.-+.-
T Consensus       258 ---------------------------~~~~~~~~----Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w  306 (464)
T KOG3764|consen  258 ---------------------------EQGTPMWS----LLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGW  306 (464)
T ss_pred             ---------------------------ccCccHHH----HHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCc
Confidence                                       11123333    34588888888777777888888899999999888774444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhccchhH--HHHHHHHHHHHHHHHHHhcCcchHHHH
Q 018388          283 QFADLMLIAGLAGTISQLLFMPLLAPILGEAK--LLSLGLFAACINMFICSISWSAWVPYA  341 (357)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~  341 (357)
                      +.|..+....+...++. -+.+.+.||++..+  ....+++..++.+....++++...+++
T Consensus       307 ~~G~~fLp~~~~y~ig~-~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~v  366 (464)
T KOG3764|consen  307 EVGLAFLPASLSYAIGT-NLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWV  366 (464)
T ss_pred             ceeeeecccccchhccC-chHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhh
Confidence            88998888888888888 67799999999433  334445555555555566666555544

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.94  E-value=4.4e-24  Score=188.61  Aligned_cols=281  Identities=19%  Similarity=0.173  Sum_probs=199.3

Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhccc
Q 018388           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (357)
Q Consensus        43 ~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  122 (357)
                      .++...+. .-+.+.+++.+|.++|+...|.++||+|||..+.++.++..++..+..++...+.+..++++|++.|+ ..
T Consensus        53 ~s~~~~~~-lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl-~~  130 (485)
T KOG0569|consen   53 LSDSTLDL-LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGL-AC  130 (485)
T ss_pred             CChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-Hh
Confidence            33434443 35889999999999999999999999999999999999998888888877655558999999999999 77


Q ss_pred             chHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH------hhhHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 018388          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF------LSTTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (357)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~------l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~  196 (357)
                      |.......-++.|..|++.||......+.+..+|..+|..++.-      -.|++.+....+.+++. ++...++||+|+
T Consensus       131 gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESPk  209 (485)
T KOG0569|consen  131 GLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESPK  209 (485)
T ss_pred             HHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCcc
Confidence            88888999999999999999999999999999999999655532      36888888887775554 444667999998


Q ss_pred             CCCC-CCCCccc---ccccccccccCCCC------CCCCccccccchhHHHHHHhhhcccchHHH----HHHHHHHHHh-
Q 018388          197 NDDD-DDLTRPI---ITEETEGVNQNESN------SPVKIPVCKKIPSIRDLICLLRSSVTLSQA----AVVAFFSGLS-  261 (357)
Q Consensus       197 ~~~~-~~~~~~~---~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-  261 (357)
                      ..-. +.|.+++   .+..+.+.+.+++.      .++++..+++..++++.+    +++..+.-    +...+.+.+. 
T Consensus       210 ~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~----~~~~lR~~~~i~~~v~~~qq~sG  285 (485)
T KOG0569|consen  210 YLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLL----KNPTLRRPLLIGIVVSFAQQFSG  285 (485)
T ss_pred             hHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHh----cCcchhHHHHHHHHHHHHHHhcC
Confidence            6433 3333333   22222221111110      001111111233444433    34443332    2233333322 


Q ss_pred             hhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHh
Q 018388          262 EGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI  332 (357)
Q Consensus       262 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  332 (357)
                      ......+....+++. |++..++-+.....+....+.. +++.++.||.|||++++.+..++.+..+++..
T Consensus       286 i~ai~~Yst~i~~~a-G~~~~~a~~an~~~g~v~~~~t-~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~  354 (485)
T KOG0569|consen  286 INAIFFYSTSIFKTA-GFTPEEAQYANLGIGIVNLLST-LVSPFLIDRLGRRPLLLISLSLMAVALLLMSI  354 (485)
T ss_pred             cceeHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence            223344444455554 9999999999999999999988 99999999999999999999999888666544

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=3.1e-24  Score=192.07  Aligned_cols=277  Identities=17%  Similarity=0.086  Sum_probs=217.1

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccc
Q 018388           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (357)
Q Consensus        44 ~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  123 (357)
                      ++.+....+.|.+.+++.++++++.++.|.+.||++..+.+..+.+.+++..++....+|   ++.+++.|++.|+ ..+
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s---~~~~ialr~llGl-~es  149 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS---FPGLIALRFLLGL-FES  149 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHH-Hhc
Confidence            455666677899999999999999999999999999999999888888888878777888   8999999999999 788


Q ss_pred             hHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH----------hhhHHHHHHHHHHHHHHHHHHHHhccC
Q 018388          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----------LSTTSAFQAATIVSMLAAAYMRVFLKD  193 (357)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~----------l~~~~~f~~~~~~~~~~~~~~~~~~~e  193 (357)
                      ..+|....+++.++.++||++.++++.+..++|.++|++++..          .||||.|++.+++.++..+..++++|+
T Consensus       150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence            8889999999999999999999999999999999999988766          289999999999999999888999999


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhh
Q 018388          194 DVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFL  273 (357)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (357)
                      .|.+..-..|.++...  .+  +.++.  + +....++ .++++..+ ..++|.+|...+..++.....++..+|+|.|+
T Consensus       230 ~P~~~~fl~~~ek~~~--~~--~~~~~--~-~~~~~~~-~~~~~~~~-a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l  300 (495)
T KOG2533|consen  230 NPSKAWFLTDEEKELV--VE--RLRES--P-SGGIENK-FKWKGFKE-ALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYL  300 (495)
T ss_pred             ChhhccccchHHHHHH--HH--HHHhc--c-CCCcccc-cCHHHHHH-HHhchhHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            8875422211111100  00  00000  0 0010111 23344333 44599999999999999999999999999999


Q ss_pred             hhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhc----cchhHHHHHHHHHH-HHHHHHHHhcC
Q 018388          274 KAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI----LGEAKLLSLGLFAA-CINMFICSISW  334 (357)
Q Consensus       274 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~-~i~~~~~~~~~  334 (357)
                      ++..|++..++..+.....++++++. +++++++||    ..+|........+. .++...+....
T Consensus       301 ~~~~~~s~~~a~~ls~~~~~~g~v~~-i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~  365 (495)
T KOG2533|consen  301 KSNGGYSELQANLLSTPYDVGGIVGL-ILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAA  365 (495)
T ss_pred             HcCCCcChHHhccccchHHhhhHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99657999999999999999999988 999999999    55565555444443 33434444443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.92  E-value=2.7e-22  Score=180.15  Aligned_cols=276  Identities=13%  Similarity=0.091  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCc-chhhhHHHHH
Q 018388           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAMLTLPLTL   90 (357)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Gr-k~~l~~~~~~   90 (357)
                      .+.+..++.....++..|.++.++.+       +.+.+..+.|++.+++.++..++++++|+++||+|| |+++.++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~   78 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSK-------TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFA   78 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            45667788888889998999988865       456777889999999999999999999999999965 7788888888


Q ss_pred             HHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHh--------hCCCccchhHHHHHHHHHHHHHHHhhHh
Q 018388           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVA--------DNISERQRASAFGILLGVLSASFVCGTL  162 (357)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~--------~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (357)
                      ..+...+..+.++   ++.+++.|++.|+ ..+...+...++..        |......|.|..|      .+|..+||.
T Consensus        79 ~~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~  148 (418)
T TIGR00889        79 GALLLFFAAQVTT---PAGMFPVLLANSL-AYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMW  148 (418)
T ss_pred             HHHHHHHHHHhcC---HHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHH
Confidence            8888888888888   8888889999888 54555555555432        3233344555555      367888888


Q ss_pred             hhHHhhh---HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHH
Q 018388          163 AARFLST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (357)
Q Consensus       163 ~~~~l~~---~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (357)
                      +++.++.   +.+|++.+++.++..++ .+.+||+++.++++                   +     ...++..+ .+ .
T Consensus       149 l~g~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~-------------------~-----~~~~~~~~-~~-~  201 (418)
T TIGR00889       149 AVSLLDIELSNIQLYITAGSSALLGVF-ALTLPDIPVAKSTA-------------------K-----MSIKVMLG-LD-A  201 (418)
T ss_pred             HHHHhcccchhHHHHHHHHHHHHHHHH-HhcCCCCCCCcccc-------------------c-----cCHHHHhh-hh-H
Confidence            8877632   23466666665555443 45677764322111                   0     00000000 11 1


Q ss_pred             HhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCc--------chHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 018388          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNK--------NQFADLMLIAGLAGTISQLLFMPLLAPILG  311 (357)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  311 (357)
                      +..+|+|+++...+..++..........+.+.|.++. |.++        ...+...+...+..+++. +..+++.||+|
T Consensus       202 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~-~~~g~l~dr~g  279 (418)
T TIGR00889       202 FILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFI-LTIPFFLKRFG  279 (418)
T ss_pred             HHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhC
Confidence            2245678887777777777666666778888888775 5443        556888888888888888 88899999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhc
Q 018388          312 EAKLLSLGLFAACINMFICSIS  333 (357)
Q Consensus       312 ~~~~~~~~~~~~~i~~~~~~~~  333 (357)
                      +|+++..+.++..++..++...
T Consensus       280 ~r~~l~~~~~~~~v~~~l~~~~  301 (418)
T TIGR00889       280 IKKVMLLSLVAWALRFGFFAYG  301 (418)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999888887666663

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.92  E-value=8.8e-23  Score=185.28  Aligned_cols=298  Identities=15%  Similarity=0.089  Sum_probs=209.0

Q ss_pred             HHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----cCcch-hhhHHHHHHH
Q 018388           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKA-MLTLPLTLSI   92 (357)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr----~Grk~-~l~~~~~~~~   92 (357)
                      +.......+..+.++.+..+       +.+++..+.|++.++..+...+..|+.|+++||    +|||| .++.+....+
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~-------~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~   81 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTD-------VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFS   81 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHH
Confidence            33445556666677777764       567788899999999999999999999999998    68755 5667778888


Q ss_pred             HHHHHHHHccchh---HHHHHHHHHHHhhhcccchHHHHHHHHHhhCC-CccchhHHHHHHHHHHHHHHHhhHhhhH---
Q 018388           93 IPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAAR---  165 (357)
Q Consensus        93 ~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~~~~---  165 (357)
                      ++..++...++..   ..+.+++.+++.++ +.+...+...++..|.. +++||++..++.+....+|..+++.+.+   
T Consensus        82 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~  160 (437)
T TIGR00792        82 IVLVLLFTTPDFSATGKLVYAYITYILLGL-FYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLV  160 (437)
T ss_pred             HHHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877777766421   24566777788787 54555566778888887 4689999999988888887665543322   


Q ss_pred             --------HhhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHH
Q 018388          166 --------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (357)
Q Consensus       166 --------~l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (357)
                              ..+||+.+.+.+++..+..+..++..||++++.+++                           ++++.+.++
T Consensus       161 ~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~---------------------------~~~~~~~~~  213 (437)
T TIGR00792       161 SYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKN---------------------------IEKKLSLKQ  213 (437)
T ss_pred             HHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc---------------------------cccCCCHHH
Confidence                    237999999888887777666666677654211110                           001113344


Q ss_pred             HHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHH
Q 018388          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (357)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  317 (357)
                      ..+.++++|.++...+..++..........+.+.|.++.++ ++...+.+.....+..+++. ++.+++.||+|+|+.+.
T Consensus       214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~g~~~~~~  291 (437)
T TIGR00792       214 IFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGV-LLFPRLVKKFGRKILFA  291 (437)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHH
Confidence            45556778888888888887777777766677777777666 45566777777778878877 78899999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCc-chHHHH-HHHHHHhhhcc
Q 018388          318 LGLFAACINMFICSISWS-AWVPYA-TTAFSVLVVFA  352 (357)
Q Consensus       318 ~~~~~~~i~~~~~~~~~~-~~~~~~-~~~~~~~~~~~  352 (357)
                      .+..+..++.+.+.+.++ .+.... ..+.+++.+..
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  328 (437)
T TIGR00792       292 GGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFV  328 (437)
T ss_pred             HHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHH
Confidence            998888888776666443 232222 33445555443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.92  E-value=6.3e-22  Score=180.19  Aligned_cols=339  Identities=10%  Similarity=0.001  Sum_probs=223.1

Q ss_pred             chhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-cCcchh
Q 018388            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAM   83 (357)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~Grk~~   83 (357)
                      ++++.++.+.+..+...++.....+.+|.|+++.     .+++.+..+.|++.+.+.++..++.+++|+++|| +|||++
T Consensus         7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~-----~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~   81 (475)
T TIGR00924         7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ-----AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT   81 (475)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH
Confidence            3466788888899999999999999999998642     1367777889999999999999999999999999 899999


Q ss_pred             hhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccc---hhHHHHHHHHHHHHHHHhh
Q 018388           84 LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ---RASAFGILLGVLSASFVCG  160 (357)
Q Consensus        84 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g  160 (357)
                      +..+.++.+++.++.+++++   .+.++++|.+.|+ +.|...+...++++|++|+++   |+++.++.....++|..+|
T Consensus        82 l~~~~~~~~~g~~~~~~~~~---~~~~~~~~~l~g~-g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig  157 (475)
T TIGR00924        82 MVLGGIVLMLGHFMLAMSIY---PDLIFYGLGTIAV-GSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFIS  157 (475)
T ss_pred             HHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHH
Confidence            99999999999999999888   7778889999999 777777899999999998754   8889999999999999999


Q ss_pred             HhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC---CCcccccccc------------cccccCCCC
Q 018388          161 TLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDD---LTRPIITEET------------EGVNQNESN  221 (357)
Q Consensus       161 ~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~~~~~~------------~~~~~~~~~  221 (357)
                      |.+++++    +|++.|.+.++..++.. +.+...++..++.+++.   +.++......            .......+.
T Consensus       158 ~~l~g~l~~~~g~~~~f~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (475)
T TIGR00924       158 PLLAGVIAENYGYHVGFNLAAVGMVIGL-LTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHV  236 (475)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9998875    89999998876544433 33333333221111100   0000000000            000000000


Q ss_pred             CCCCcc-------------ccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcch----H
Q 018388          222 SPVKIP-------------VCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQ----F  284 (357)
Q Consensus       222 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~  284 (357)
                      ......             ....++...+  ..-.|...+..+++...+.+..+....+.++.+.++..+.+...    .
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~  314 (475)
T TIGR00924       237 VIANILLMTVTLAVIIFFFRLAFKPRLDA--VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPV  314 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCH--HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECH
Confidence            000000             0000000000  00011123444555566666777777787888887754444222    5


Q ss_pred             HHHHHHHHHHHHHHHHHHHh---hhhhc-cchhHHH--HHHHHHHHHHHHHHHh---------cCcchHHHH-HHHHHHh
Q 018388          285 ADLMLIAGLAGTISQLLFMP---LLAPI-LGEAKLL--SLGLFAACINMFICSI---------SWSAWVPYA-TTAFSVL  348 (357)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~---~l~~~-~~~~~~~--~~~~~~~~i~~~~~~~---------~~~~~~~~~-~~~~~~~  348 (357)
                      +.+.+..++..++.++++..   ++.|| .+++...  .+|.++.++++..+.+         ..+.+.... ..+.++|
T Consensus       315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~g  394 (475)
T TIGR00924       315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLG  394 (475)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence            78888888888887744432   34443 2223333  6788888888777664         234444444 5677888


Q ss_pred             hhccccc
Q 018388          349 VVFATPS  355 (357)
Q Consensus       349 ~~~~~p~  355 (357)
                      ..+..|+
T Consensus       395 e~~~~p~  401 (475)
T TIGR00924       395 ELMISPL  401 (475)
T ss_pred             HHHHhHH
Confidence            8887775

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.91  E-value=4.7e-23  Score=189.90  Aligned_cols=299  Identities=17%  Similarity=0.120  Sum_probs=204.7

Q ss_pred             HhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccch
Q 018388           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (357)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~  104 (357)
                      +...+..+.+.++.. ....+.+....+.+++.+...++..+++++.|+++|++|||+.++++.+...++.+++++++| 
T Consensus        64 g~~s~~~~~~~~~~~-~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~-  141 (513)
T KOG0254|consen   64 GGISGALDFLQRFAS-LYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS-  141 (513)
T ss_pred             ccchhhHHHHHhccc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh-
Confidence            455566665554321 111111111146699999999999999999999999999999999999999999999999999 


Q ss_pred             hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-----hhHHHHHHHHHH
Q 018388          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIV  179 (357)
Q Consensus       105 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-----~~~~~f~~~~~~  179 (357)
                        ++.++++|+++|+ +.|........+++|..|++.||...+..+....+|..++..++...     +||..+.+..+.
T Consensus       142 --~~~l~~GR~l~G~-g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~  218 (513)
T KOG0254|consen  142 --WYQLIVGRILTGL-GVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIP  218 (513)
T ss_pred             --HHHHHHHHHHhcc-chhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHH
Confidence              9999999999999 77777789999999999999999999999999999999997777665     699999998888


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCccc---ccccccccccCCCCCC-------CCccccccch-hHHHHHHhhhcccch
Q 018388          180 SMLAAAYMRVFLKDDVPNDDDDDLTRPI---ITEETEGVNQNESNSP-------VKIPVCKKIP-SIRDLICLLRSSVTL  248 (357)
Q Consensus       180 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~  248 (357)
                      +++..+. .+++||+|++.-++.+.+++   ........+++.+.+.       ..+....+.+ .+++..+...+++..
T Consensus       219 ~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  297 (513)
T KOG0254|consen  219 AVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLI  297 (513)
T ss_pred             HHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHH
Confidence            7777666 78899998864433222211   1111110000000000       0000000000 122222111112223


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHH
Q 018388          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (357)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~  328 (357)
                      ....+..+.+..+......+.+.+++.. |.+... .......++...++. ++..++.||.|||+.++.+...+.++.+
T Consensus       298 i~~~l~~fqq~tG~~~~~~Y~~~if~~~-g~~~~~-~~~~~~~~~v~~~~t-~~~~~lvd~~gRr~lll~s~~~m~~~~~  374 (513)
T KOG0254|consen  298 IGLLLQLFQQLTGINYVFYYSTTIFKSA-GLKSDT-FLASIILGVVNFLGT-LVATYLVDRFGRRKLLLFGAAGMSICLV  374 (513)
T ss_pred             HHHHHHHHHHHhCCceEEeehHHHHHhc-CCCCch-HHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence            3344444445455556677777777665 766544 444555566666666 6768999999999999999999999987


Q ss_pred             HHHh
Q 018388          329 ICSI  332 (357)
Q Consensus       329 ~~~~  332 (357)
                      +++.
T Consensus       375 ~~~~  378 (513)
T KOG0254|consen  375 ILAV  378 (513)
T ss_pred             HHHH
Confidence            7664

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.91  E-value=1.4e-21  Score=177.97  Aligned_cols=341  Identities=10%  Similarity=0.043  Sum_probs=209.1

Q ss_pred             CccchhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-cCc
Q 018388            2 GMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGR   80 (357)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~Gr   80 (357)
                      ++++.+|.++.++...+...++.....+.++.|+++.       ++.+....+++.+.+.....+..++.|+++|| +||
T Consensus         8 ~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~-------lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~   80 (489)
T PRK10207          8 GLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQ-------LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGT   80 (489)
T ss_pred             chhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccch
Confidence            3444567788888888999999999999999998763       44455566888888888888888999999999 999


Q ss_pred             chhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCcc--chhHHHHHHHHHHHHHHH
Q 018388           81 KAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASFV  158 (357)
Q Consensus        81 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~  158 (357)
                      ||+++.+.++..++++.++++++.  ...++++|.++|+ +.|...|...+++.|.+|++  +|+++++++....++|..
T Consensus        81 r~~~~~g~~~~~~g~~~~~~~~~~--~~ll~~~~~l~~i-g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~  157 (489)
T PRK10207         81 KRTIVLGAIVLAIGYFMTGMSLLK--PDLIFIALGTIAV-GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSL  157 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHh-ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHH
Confidence            999999999999999999988762  2235578999999 77888889999999999877  457789999999999999


Q ss_pred             hhHhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCC-----CCCCCCcccccccc------cccccCCCCCC
Q 018388          159 CGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPND-----DDDDLTRPIITEET------EGVNQNESNSP  223 (357)
Q Consensus       159 ~g~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~-----~~~~~~~~~~~~~~------~~~~~~~~~~~  223 (357)
                      +||.+++++    |||+.|++.++. .+..++.+...++..++.     +++.|..+......      -......+...
T Consensus       158 ~g~~l~g~l~~~~gw~~~F~i~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~  236 (489)
T PRK10207        158 ISLSLAPVIADKFGYSVTYNLCGAG-LIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVE  236 (489)
T ss_pred             HHHHHHHHHHHhhChHHHHHHHHHH-HHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence            998888775    899999986543 443343333334322111     11112222110000      00000000000


Q ss_pred             CCcccccc---------chhHHHHHHhhhcccchHHHH--HHHHHHHHhhhhhhHHHHHhhhhhcccCc----chHHHHH
Q 018388          224 VKIPVCKK---------IPSIRDLICLLRSSVTLSQAA--VVAFFSGLSEGGMQASFLYFLKAQFHFNK----NQFADLM  288 (357)
Q Consensus       224 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~  288 (357)
                      ........         ....++..+ ..|+|.+....  +...+.+..+....+.++.|.++..+.+.    ...+.+.
T Consensus       237 ~~~~~~~~~~~i~~~~f~~~~~~~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~  315 (489)
T PRK10207        237 VANLVLIVLSIVVTIIFFREAFKLDK-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQ  315 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHH
Confidence            00000000         000000001 12233333222  22444455555556777888875323211    0124444


Q ss_pred             HHHHHHHHHHHHHHHhhhhhccchhH-------HHHHHHHHHHHHHHHHH-----hc-----CcchHHHH-HHHHHHhhh
Q 018388          289 LIAGLAGTISQLLFMPLLAPILGEAK-------LLSLGLFAACINMFICS-----IS-----WSAWVPYA-TTAFSVLVV  350 (357)
Q Consensus       289 ~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~i~~~~~~-----~~-----~~~~~~~~-~~~~~~~~~  350 (357)
                      +...+..++.. .+.+++.||.++|+       -+..|+++.+++++.+.     ..     .+.+.... ..+.++|.+
T Consensus       316 ~~n~~~iii~~-pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~  394 (489)
T PRK10207        316 ALNPFWVVVAS-PILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGEL  394 (489)
T ss_pred             hHhHHHHHHHH-HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            55555555666 55678999998876       36677777777764331     21     12232222 456688887


Q ss_pred             ccccc
Q 018388          351 FATPS  355 (357)
Q Consensus       351 ~~~p~  355 (357)
                      +..|.
T Consensus       395 ~~~~~  399 (489)
T PRK10207        395 FISAL  399 (489)
T ss_pred             HHhHH
Confidence            77664

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.90  E-value=1e-20  Score=169.11  Aligned_cols=275  Identities=14%  Similarity=0.075  Sum_probs=190.3

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHH--HHHHHHHHHHHHHhhhh-hhhhcCcchhhhH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQ--QAIIGLGTLVMMPVIGN-LSDQYGRKAMLTL   86 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~--~~~~~~~~~i~~~~~G~-l~dr~Grk~~l~~   86 (357)
                      +..+....+..++..++..|.+|.+++|        .+.+..+.|+.  .++..+...+.+|++++ ..||+||||.+++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~--------~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~   74 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRE--------DGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVL   74 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHH
Confidence            4456667788888889999999999985        25666778886  46778888899999955 7999999999766


Q ss_pred             HHHHH-HHHHHHHH-HccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh
Q 018388           87 PLTLS-IIPLAILA-YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (357)
Q Consensus        87 ~~~~~-~~~~~~~~-~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  164 (357)
                      ...+. ........ +........+++....+.++ ..+...+...++..|..++++++...+....+..+|..+|+...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~  153 (390)
T TIGR02718        75 PMQCLVSACLASLALVGPDVAGAGWAVGLLACASL-ASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGT  153 (390)
T ss_pred             HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            55332 22222222 21111112233444444555 45566677888888888888888888888888888988888655


Q ss_pred             HH----hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHH
Q 018388          165 RF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (357)
Q Consensus       165 ~~----l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (357)
                      ++    .+||.+|++.+++..+..+..++ .+|++++++++                          +.+   ..++..+
T Consensus       154 ~~l~~~~gw~~~f~~~a~l~~~~~~~~~~-~~~~~~~~~~~--------------------------~~~---~~~~~~~  203 (390)
T TIGR02718       154 LVLFGKFGQRPAFLLVACVPLASLVCVLW-LKDRAVASPEA--------------------------PLA---RRASLFR  203 (390)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHH-cCCCCcCcccc--------------------------chh---hHHHHHH
Confidence            44    59999999998887666555444 33332211110                          000   1122223


Q ss_pred             hhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHH
Q 018388          241 LLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGL  320 (357)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  320 (357)
                       +.|+|.++......++..........+.+.|++|. |++++++|......+....+.+.++.+++.||+++|+.+..+.
T Consensus       204 -~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~  281 (390)
T TIGR02718       204 -FFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDA-GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV  281 (390)
T ss_pred             -HHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhc-CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence             44577777777777888787888888999999985 9999999999888876555444388899999999999888777


Q ss_pred             HHHHH
Q 018388          321 FAACI  325 (357)
Q Consensus       321 ~~~~i  325 (357)
                      .+.++
T Consensus       282 ~~~~~  286 (390)
T TIGR02718       282 GLAGS  286 (390)
T ss_pred             HHHHH
Confidence            66533

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.90  E-value=1.1e-20  Score=164.94  Aligned_cols=297  Identities=11%  Similarity=0.029  Sum_probs=194.2

Q ss_pred             cchhHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccc
Q 018388           45 ECSLAIYL-SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (357)
Q Consensus        45 ~~~~s~~~-~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  123 (357)
                      +.+++..+ .|.+.+++..+++++.++.|+++||+|.|+++..+.+.+++.+++.+++++   +..+.+.|++.|+ +.|
T Consensus        55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S---l~~L~i~R~llGv-aEA  130 (511)
T TIGR00806        55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS---VWHMQLMEVFYSV-TMA  130 (511)
T ss_pred             HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHH
Confidence            55666777 899999999999999999999999999999999999999999999999999   9999999999999 888


Q ss_pred             hHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh---hhHHHHHHHH--HHHHHHHHHHHHhccCCCCCC
Q 018388          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---STTSAFQAAT--IVSMLAAAYMRVFLKDDVPND  198 (357)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l---~~~~~f~~~~--~~~~~~~~~~~~~~~e~~~~~  198 (357)
                      ... +...++.+++|+++|+++.++...+..+|.++++++++.+   +||+-..+.-  ..+....++..+++|..++..
T Consensus       131 ~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl  209 (511)
T TIGR00806       131 ARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSL  209 (511)
T ss_pred             HHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhh
Confidence            887 9999999999999999999999999999999999888875   7876444331  222333344456788554421


Q ss_pred             --CCCCCCcccccccccccccCCCCCCCCcc-c-cccchhHHHHHH---hhhcccchHHHHHHHHHHHHhhhhhhHHHHH
Q 018388          199 --DDDDLTRPIITEETEGVNQNESNSPVKIP-V-CKKIPSIRDLIC---LLRSSVTLSQAAVVAFFSGLSEGGMQASFLY  271 (357)
Q Consensus       199 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                        +++.+.++...  .+.+....++.+.... . .......+..++   ...+|+.+....+=..+...++..+.++...
T Consensus       210 ~f~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~  287 (511)
T TIGR00806       210 FFNRLEDVRGALP--CELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHT  287 (511)
T ss_pred             hhccccccccccc--cccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHH
Confidence              11100000000  0000000000000000 0 011111122221   2234666655555555555566666666655


Q ss_pred             hhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchh--HHHHHHHHHHHHHHHHHHhcCcchHHHHH-HHHHHh
Q 018388          272 FLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA--KLLSLGLFAACINMFICSISWSAWVPYAT-TAFSVL  348 (357)
Q Consensus       272 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~  348 (357)
                      .-++..+-++...|..-++....+.+.. +..|++..+..+.  ..+.+..++.+..++++..+++.|..+.. +++...
T Consensus       288 LW~~v~~~~~~yNG~veA~~tllga~~a-~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~  366 (511)
T TIGR00806       288 LWGTLDESLNKYNGAVDAASTLLGAITS-FIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGI  366 (511)
T ss_pred             HHHHcCCCccccCCHHHHHHHHHHHHHH-HHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHH
Confidence            5554423222255788888888888888 8888886665442  23334444445556677778888887774 444433


Q ss_pred             h
Q 018388          349 V  349 (357)
Q Consensus       349 ~  349 (357)
                      .
T Consensus       367 y  367 (511)
T TIGR00806       367 Y  367 (511)
T ss_pred             H
Confidence            3

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.89  E-value=1.5e-21  Score=180.77  Aligned_cols=279  Identities=19%  Similarity=0.131  Sum_probs=193.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchH
Q 018388           46 CSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI  125 (357)
Q Consensus        46 ~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  125 (357)
                      ...+.....+..+++.+|.++|++++|.++||+|||++++.+.++..++.+..++++|   ++.+++.|++.|+ +.+..
T Consensus       113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~---~~~~~~~Rfl~G~-~~~~~  188 (521)
T KOG0255|consen  113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN---YWMFLIFRFLSGF-FGSGP  188 (521)
T ss_pred             eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHh-hccch
Confidence            3445677789999999999999999999999999999999999999999999999999   9999999999999 55666


Q ss_pred             HHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh--hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 018388          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDL  203 (357)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  203 (357)
                      ......++.|++++++|+.+..+ ......+..++|..++++  +||+.+++..+...+..++ ++..||++++...+.+
T Consensus       189 ~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~  266 (521)
T KOG0255|consen  189 LTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGR  266 (521)
T ss_pred             hHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCc
Confidence            68999999999999999999999 666666677777776665  7999999998887776555 5666799987655444


Q ss_pred             CcccccccccccccC--CCCCC--C----Ccccccc--chhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhh
Q 018388          204 TRPIITEETEGVNQN--ESNSP--V----KIPVCKK--IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFL  273 (357)
Q Consensus       204 ~~~~~~~~~~~~~~~--~~~~~--~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (357)
                      .+++.+..++..+.+  ..+..  .    ...+.+.  .++. .....+.+.+++....+...+.++.....+.-++...
T Consensus       267 ~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~  345 (521)
T KOG0255|consen  267 IDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPK-ISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNV  345 (521)
T ss_pred             hHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCC-CchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhh
Confidence            433322222111110  00000  0    0000000  0000 1122234455566656555555544444444444444


Q ss_pred             hhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCcc
Q 018388          274 KAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSA  336 (357)
Q Consensus       274 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  336 (357)
                      .. +|.+.   .......+....... ...+...|+.|||.....+..+..++++...+....
T Consensus       346 ~~-lg~~~---~~~~~~~~~~~~p~~-~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~  403 (521)
T KOG0255|consen  346 SG-LGGNI---YLNFTLSGLVELPAY-FRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD  403 (521)
T ss_pred             hh-cCchH---HHHHHHHHHHHhhHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            43 24333   344444444555544 666788999999999999999999999888876543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.89  E-value=4.8e-20  Score=164.95  Aligned_cols=299  Identities=13%  Similarity=0.103  Sum_probs=205.8

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hcCcchh
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAM   83 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~Grk~~   83 (357)
                      .++..+....+-..++.....+.++.|.++        .+.+....+++..+..+...+.+|+.|+++|    |+||||+
T Consensus         4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl~~--------lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp   75 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWALQLSLLTPYVQE--------LGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP   75 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH
Confidence            345566666677788888888888888753        4556678899999999999999999999999    5999999


Q ss_pred             hhHH-HHHHHHHHHHHHHccchhH--------------HHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccch--hHHH
Q 018388           84 LTLP-LTLSIIPLAILAYRRSISF--------------FYAYYALRTLTAMVCEGSINCLALAYVADNISERQR--ASAF  146 (357)
Q Consensus        84 l~~~-~~~~~~~~~~~~~~~~~~~--------------~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r--~~~~  146 (357)
                      ++.. .+...++..+.+++++...              .+..+++-.+..+ +.....+...++++|.+|+++|  +.+.
T Consensus        76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~-~~n~~~~p~rALiaDl~p~~~~~~~~a~  154 (477)
T TIGR01301        76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDV-ANNMLQGPCRAFLADLTGGDARRTRIAN  154 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccCchhHHHHHHH
Confidence            8875 5566666677777665210              0222333333344 4455667889999999998865  5799


Q ss_pred             HHHHHHHHHHHHhhHhhhHHh-------------------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccc
Q 018388          147 GILLGVLSASFVCGTLAARFL-------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPI  207 (357)
Q Consensus       147 ~~~~~~~~~g~~~g~~~~~~l-------------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~  207 (357)
                      ++.+...++|.++|+.++++.                   +.|..|++.+++.++..+...+..||.+..++++.+.+  
T Consensus       155 ~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~--  232 (477)
T TIGR01301       155 AYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS--  232 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh--
Confidence            999999999999999988764                   33678888888877877888888888764322210000  


Q ss_pred             ccccccccccCCCCCCCCccccccchhHHHHHHhhhc-ccchHHHHHHHHHHHHhhhhhhHHHHHhhh-hhcccCcch--
Q 018388          208 ITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS-SVTLSQAAVVAFFSGLSEGGMQASFLYFLK-AQFHFNKNQ--  283 (357)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~--  283 (357)
                              +   .++.   ++.+....+++.++.+++ +|.++.+++..++.+++...+..+.+.|+. +.++-++.+  
T Consensus       233 --------~---~~~~---~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~  298 (477)
T TIGR01301       233 --------E---AAPP---SKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA  298 (477)
T ss_pred             --------h---cccc---cccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh
Confidence                    0   0000   000111234555555443 677899999999999999999888888775 456544321  


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHHhhhhhccch-hHHHHHHHHHHHHHHHHHHh
Q 018388          284 --------FADLMLIAGLAGTISQLLFMPLLAPILGE-AKLLSLGLFAACINMFICSI  332 (357)
Q Consensus       284 --------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~  332 (357)
                              -.+.....++...+.+ ++..++.+|+|+ |+....+.++.++++....+
T Consensus       299 ~y~~gvr~G~~~l~~~s~~~~i~s-~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~  355 (477)
T TIGR01301       299 KYDDGVRAGAFGLMLNSVVLGITS-IGMEKLCRGWGAGKRLWGIVNIILAICLAATVL  355 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence                    1122334444444555 566888999985 67778888888888776654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.88  E-value=7.9e-20  Score=165.88  Aligned_cols=293  Identities=14%  Similarity=0.096  Sum_probs=193.8

Q ss_pred             HHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccc
Q 018388           24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS  103 (357)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~  103 (357)
                      .......++.+..|. ++++        ...|+.+...++..+..++.|+++|.+|||..++.+.++..+|.++++-++|
T Consensus        60 ~~~~a~~l~~I~~di-G~~~--------~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~  130 (599)
T PF06609_consen   60 LVLPASILPYINADI-GGSD--------NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQN  130 (599)
T ss_pred             HhccHHHHHHHHHhc-CCCc--------cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCc
Confidence            333345566655543 2221        1266777789999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHH
Q 018388          104 ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIV  179 (357)
Q Consensus       104 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~  179 (357)
                         ...++++..+.|+ +.|... .....++|..|.|.|....+............+|.++..+    +|||.|++..+.
T Consensus       131 ---~~~~iag~~l~Gv-gaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~  205 (599)
T PF06609_consen  131 ---MNTFIAGMVLYGV-GAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIW  205 (599)
T ss_pred             ---HHHHHHHHHHHHH-hhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHH
Confidence               8888999999999 666664 5667789999999998888777766666566777777654    799999999888


Q ss_pred             HHHHHHHHHHh-ccCCCCCCCC-CCCCcccccc-c-------------------ccccc-cCCCCCCCC-----------
Q 018388          180 SMLAAAYMRVF-LKDDVPNDDD-DDLTRPIITE-E-------------------TEGVN-QNESNSPVK-----------  225 (357)
Q Consensus       180 ~~~~~~~~~~~-~~e~~~~~~~-~~~~~~~~~~-~-------------------~~~~~-~~~~~~~~~-----------  225 (357)
                      ..+.++...++ .|++.+..+. +..+.+..++ +                   -.... ..+.....-           
T Consensus       206 ~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv  285 (599)
T PF06609_consen  206 SGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLV  285 (599)
T ss_pred             HHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHH
Confidence            77666554443 3433221111 1100010000 0                   01110 111111100           


Q ss_pred             -----ccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcc---hHHHHHHHHHHHHHH
Q 018388          226 -----IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN---QFADLMLIAGLAGTI  297 (357)
Q Consensus       226 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~  297 (357)
                           +.....++++.+ .++++++|.+...+++.++..+.+.....+.|......++-++.   +.++.....+.+..+
T Consensus       286 ~F~~wE~~~~~~~Pl~P-~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~  364 (599)
T PF06609_consen  286 AFVVWEWFGAPKDPLFP-HRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCA  364 (599)
T ss_pred             HHHHhhhhccCCCCcCC-HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHH
Confidence                 111111223322 23344346676667777888878888888889888877766653   457777777777777


Q ss_pred             HHHHHHhhhhhccch-hHHHHHHHHHHHHHHHHHHh
Q 018388          298 SQLLFMPLLAPILGE-AKLLSLGLFAACINMFICSI  332 (357)
Q Consensus       298 ~~~~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~  332 (357)
                      +. ++.+.+..+.++ |+.++++..+..+++.+++.
T Consensus       365 g~-~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~  399 (599)
T PF06609_consen  365 GA-VILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAA  399 (599)
T ss_pred             HH-HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH
Confidence            77 666788877776 66677787777766655554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.88  E-value=7.2e-20  Score=152.40  Aligned_cols=295  Identities=16%  Similarity=0.153  Sum_probs=227.1

Q ss_pred             hHHHHHHHHHHHHH----HhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388           11 SHLFVTVFLWGFAT----MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus        11 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      +.......+..++.    ..+.|.++.+.        ++.++|....|+++++..+...+.+|+..+++.|+|.++.+..
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir--------~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~   82 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIR--------QDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFL   82 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHH--------HHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHH
Confidence            34444444444443    34455555553        4678888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh--
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA--  164 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--  164 (357)
                      ++++..++.++-... +   .+.++.+..+.|. +.+.......+++-+.+| |+-+..++.+....++|..+++.+.  
T Consensus        83 ~Llli~~G~~iR~~~-~---~~~L~~gt~l~G~-gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavp  156 (395)
T COG2807          83 ALLLIAAGILIRSLG-G---LPLLFLGTLLAGA-GIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVP  156 (395)
T ss_pred             HHHHHHHHHHHHhcc-c---HHHHHHHHHHHHh-hHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhH
Confidence            999999999988776 4   6778899999998 878888889999999988 6778999999999999888776554  


Q ss_pred             --HHh-hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHh
Q 018388          165 --RFL-STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL  241 (357)
Q Consensus       165 --~~l-~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (357)
                        ... +||.....-+..+++.++. |  +|...+++..+                          ...+..+..+    
T Consensus       157 la~~~~gW~~aL~~WAl~allAl~~-W--lPq~~r~~~~~--------------------------~~~~~~~~~~----  203 (395)
T COG2807         157 LAQHSGGWRGALGFWALLALLALLI-W--LPQALREQAAS--------------------------IATKLVSVRK----  203 (395)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHHH-H--hhhcccccccc--------------------------cccccccccc----
Confidence              333 7999888888886665443 2  35432221110                          0000001112    


Q ss_pred             hhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccc-hhHHHHHHH
Q 018388          242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG-EAKLLSLGL  320 (357)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~  320 (357)
                      ++++|.-|...+...++++.++....|+|.++.|+ |+|+++.|.+.+...+.....+ +..+.+.+|.. +|+......
T Consensus       204 vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~-ll~P~la~R~~n~r~~~~~~~  281 (395)
T COG2807         204 VWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTA-LLIPLLARRSKNQRPLVVLAL  281 (395)
T ss_pred             cccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHH-HHHHHHHHHhcccchHHHHHH
Confidence            45689999999999999999999999999999998 9999999999999999999998 88899998654 566777777


Q ss_pred             HHHHHHHHHHHhcCcchHHHHHHHHHHhhhcccc
Q 018388          321 FAACINMFICSISWSAWVPYATTAFSVLVVFATP  354 (357)
Q Consensus       321 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  354 (357)
                      ..+.++..-+.+.+.....+...++|.|.|..+|
T Consensus       282 ~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~  315 (395)
T COG2807         282 LLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFP  315 (395)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHH
Confidence            7788887777777665544446778888777665

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.88  E-value=6.9e-20  Score=167.42  Aligned_cols=284  Identities=12%  Similarity=0.062  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hcCcch-hhhH
Q 018388           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKA-MLTL   86 (357)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~Grk~-~l~~   86 (357)
                      ...++.+...+......+.++.|..+       ..+++....|.+..+..+...+..|++|.++|    |+|||| .++.
T Consensus        10 ~yg~g~~~~~~~~~~~~~~l~~yyt~-------v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~   82 (473)
T PRK10429         10 SYGFGAFGKDFAIGIVYMYLMYYYTD-------VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILI   82 (473)
T ss_pred             hhccchhHHhHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhh
Confidence            34455566667777778888888765       45777889999999999999999999999999    669955 4556


Q ss_pred             HHHHHHHHHHHHHHccch---hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCC-CccchhHHHHHHHHHHHHHHHhhHh
Q 018388           87 PLTLSIIPLAILAYRRSI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTL  162 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~~g~~  162 (357)
                      +.+..+++..++...++.   ..+.++++..++.++ +.....+...++..|.. +++||.+..++.....++|..+++.
T Consensus        83 g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~  161 (473)
T PRK10429         83 GTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGM-TYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAG  161 (473)
T ss_pred             hhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHH-HHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777776555443321   123345555556565 44555567888999998 5899999998877777776555443


Q ss_pred             hhHH----h-------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCcccccc
Q 018388          163 AARF----L-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK  231 (357)
Q Consensus       163 ~~~~----l-------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (357)
                      +...    +       +|+....+.+++..+..+..++..||.+++++.+                         .++++
T Consensus       162 ~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------------~~~~~  216 (473)
T PRK10429        162 FTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQV-------------------------SAEGS  216 (473)
T ss_pred             HHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccc-------------------------ccccc
Confidence            3221    1       4555556666655555555555566643221110                         00012


Q ss_pred             chhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 018388          232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG  311 (357)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  311 (357)
                      +.+.++.++.+++||.++..++..++............+.|.++..+ +....+.+....++..+++. ++.+++.||+|
T Consensus       217 ~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~g  294 (473)
T PRK10429        217 HLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTL-ILFPRLVKSLS  294 (473)
T ss_pred             CCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcC
Confidence            23456666667788888888888888877777777777767776644 45555666676667777777 77899999999


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 018388          312 EAKLLSLGLFAACINMFIC  330 (357)
Q Consensus       312 ~~~~~~~~~~~~~i~~~~~  330 (357)
                      +|+.+..+..+..++.+.+
T Consensus       295 kk~~~~~~~~~~~~~~~~~  313 (473)
T PRK10429        295 RRILWAGASIFPVLSCGVL  313 (473)
T ss_pred             cHHHHHHHHHHHHHHHHHH
Confidence            9999888877766555443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.87  E-value=2e-19  Score=164.85  Aligned_cols=336  Identities=10%  Similarity=0.040  Sum_probs=199.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-cCcchhhh
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLT   85 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~Grk~~l~   85 (357)
                      ++.++.++...+...++.....+.++.|+.+.       ++.+....+++.+.+........+++|+++|| +|||+.+.
T Consensus        20 p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-------lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~   92 (500)
T PRK09584         20 PKAFYLIFSIELWERFGYYGLQGIMAVYLVKQ-------LGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM   92 (500)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            44577888888889999888888999998753       34445555666666666656666789999999 59999999


Q ss_pred             HHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccc--hhHHHHHHHHHHHHHHHhhHhh
Q 018388           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ--RASAFGILLGVLSASFVCGTLA  163 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~  163 (357)
                      .+.++..++..+++++++.  .+.+.+.|+++|+ +.|...+...+++.|++|+++  |++++++...+.++|..+||.+
T Consensus        93 ~g~~~~~ig~~l~~~~~~~--~~~l~~~~~l~gi-g~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i  169 (500)
T PRK09584         93 LGAIVLAIGYALVAWSGHD--AGIVYMGMATIAV-GNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA  169 (500)
T ss_pred             HHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHH-hhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH
Confidence            9999999999888887431  4566788999999 667777888899999998654  4567888899999999999999


Q ss_pred             hHHh----hhHHHHHHHHHHHHHHH---HHHHHhccCCCCCCC-CCCCCcccccccc------cccccCCCCCCCCcccc
Q 018388          164 ARFL----STTSAFQAATIVSMLAA---AYMRVFLKDDVPNDD-DDDLTRPIITEET------EGVNQNESNSPVKIPVC  229 (357)
Q Consensus       164 ~~~l----~~~~~f~~~~~~~~~~~---~~~~~~~~e~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  229 (357)
                      ++++    |||+.|++.++...+..   +.....++|..++.+ ++.|..+......      ........+.+......
T Consensus       170 ~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (500)
T PRK09584        170 TPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMAL  249 (500)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            9876    89999998875433332   222333444322111 1122211100000      00000000000000000


Q ss_pred             -----c-cchhHHHHH--HhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhh----h-----cccCcchHHHHHHHHH
Q 018388          230 -----K-KIPSIRDLI--CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKA----Q-----FHFNKNQFADLMLIAG  292 (357)
Q Consensus       230 -----~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~g~~~~~~~~~~~~~~  292 (357)
                           . .....++..  +... +++....+ ..++....+.......|.++..    .     .|+.. ..+.+.+...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i-~~~~~~s~n~  326 (500)
T PRK09584        250 GVVALGIVVIFGKEAFAMKGAA-RRKMIVAF-ILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAV-EPEQYQALNP  326 (500)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHH-HHHHHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEE-CHHHHHHHhH
Confidence                 0 000000000  0011 12222222 2223333444445555554332    1     12221 1466666666


Q ss_pred             HHHHHHHHH---HHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCc---------c-hHHHHHHHHHHhhhccccc
Q 018388          293 LAGTISQLL---FMPLLAPILGEAKLLSLGLFAACINMFICSISWS---------A-WVPYATTAFSVLVVFATPS  355 (357)
Q Consensus       293 ~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~p~  355 (357)
                      +..++..++   ..+++.||.+..+.+.+|+++.+++++.+....+         . |......+.++|..+..|.
T Consensus       327 i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~  402 (500)
T PRK09584        327 FWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGL  402 (500)
T ss_pred             HHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHH
Confidence            555555522   2355666666777889999999999888766433         2 3333356778888877664

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.87  E-value=2.5e-20  Score=168.38  Aligned_cols=295  Identities=15%  Similarity=0.118  Sum_probs=215.0

Q ss_pred             HHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hcCcchhhh-HHHHHHHHHHH
Q 018388           22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAMLT-LPLTLSIIPLA   96 (357)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~Grk~~l~-~~~~~~~~~~~   96 (357)
                      +........++.+..+       ..++++...|++..+..+..++..|+.|.++|    |+||||.++ .+.+..+++..
T Consensus        15 ~~~~~~~~~~~~f~~~-------~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~   87 (428)
T PF13347_consen   15 MIWSLLSSYLLYFYTD-------VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFF   87 (428)
T ss_pred             HHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHH
Confidence            3334444455555544       45777888999999999999999999999999    899877655 67777777777


Q ss_pred             HHHHc-c-chh---HHHHHHHHHHHhhhcccchHHHHHHHHHhhCCC-ccchhHHHHHHHHHHHHHHHhhHhhhHH----
Q 018388           97 ILAYR-R-SIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLAARF----  166 (357)
Q Consensus        97 ~~~~~-~-~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~----  166 (357)
                      ++... + +..   ...++.+..++..+ +.........++..|..+ +|||.+..+.-+....+|..+.+.+...    
T Consensus        88 llf~~~p~~~~~~~~~~~~~~~~~l~~~-~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~  166 (428)
T PF13347_consen   88 LLFSPPPAGLSFTAKLVWLFVFYILFDI-AYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSW  166 (428)
T ss_pred             HhhccccchhhhhhHHHHHHHHHHHHHH-hhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            77665 4 111   13344666666676 556666778899999998 5789999999888888887644433322    


Q ss_pred             h-------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHH
Q 018388          167 L-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (357)
Q Consensus       167 l-------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (357)
                      +       +|++..++.+++..+..+...+..||++++.+++                            +++.+.++..
T Consensus       167 ~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~----------------------------~~~~~~~~~~  218 (428)
T PF13347_consen  167 FGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQ----------------------------EKKISLRDSL  218 (428)
T ss_pred             hccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccc----------------------------ccccccccch
Confidence            2       5888888888887877777777788822211111                            1112334445


Q ss_pred             HhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHH
Q 018388          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (357)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (357)
                      +.+++||.++...+..++............+.|.++..|.+ ...+.+.....+...++. ++.+++.||+|+|+....+
T Consensus       219 ~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~-~~~~~l~~r~gk~~~~~~~  296 (428)
T PF13347_consen  219 RSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGS-PLWGRLSKRFGKKKVYIIG  296 (428)
T ss_pred             hhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHH-HHHHHHHHHccceeehhhh
Confidence            55777999999999999998888888889999999988877 455777778888888877 7779999999999999999


Q ss_pred             HHHHHHHHHHHHhcC--cchHHHH-HHHHHHhhhcccc
Q 018388          320 LFAACINMFICSISW--SAWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       320 ~~~~~i~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~p  354 (357)
                      ..+.+++.+.+.+.+  +.+..++ ..+.+++.+..++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~  334 (428)
T PF13347_consen  297 LLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFV  334 (428)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccc
Confidence            999999988777765  5554444 4566777665543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.87  E-value=2.1e-25  Score=203.18  Aligned_cols=305  Identities=19%  Similarity=0.214  Sum_probs=198.1

Q ss_pred             HHHHHHHHHHHHhhHhhHHHHHHH-HhcC--CCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHH
Q 018388           14 FVTVFLWGFATMMVVPAITDVTMM-ALCP--GLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (357)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~   90 (357)
                      .++.+..+++...+....+..... ....  ...+.+.+..+.++..+...++..+++++.|.++||+|||+.++.+.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            344577777777766665555422 1111  1122222456779999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcc---chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           91 SIIPLAILAYRR---SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        91 ~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      ..++.++.++++   +   ++.+.++|+++|+ +.|...+....++.|..|+++|++..++.+....+|..++..++...
T Consensus        86 ~~i~~~~~~~~~~~~~---~~~~~~~R~~~G~-~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~  161 (451)
T PF00083_consen   86 MIIGSILIAFAPSYNN---FWMLLIGRFLIGF-GIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV  161 (451)
T ss_pred             cccccccccccccccc---ccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999   7   8899999999999 77777789999999999999999999999999999988887665432


Q ss_pred             ----h---hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccccccccc---ccccCCC--C-CCCCccccccchh
Q 018388          168 ----S---TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETE---GVNQNES--N-SPVKIPVCKKIPS  234 (357)
Q Consensus       168 ----~---~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~-~~~~~~~~~~~~~  234 (357)
                          +   ||..+...++.+++..+ ..+++||+|++...+.+.+++.+..++   .+..+++  + .++.++.++.+..
T Consensus       162 ~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (451)
T PF00083_consen  162 SYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKAS  240 (451)
T ss_pred             ccccccccccccccccccccccccc-cccccccccceeccccccccccccccccccccccccccccccccccccccccee
Confidence                4   99999888887665444 456789999875444433333322222   1111110  0 0011111111112


Q ss_pred             HHHHHHhhhccc----chHHHHHHHHHHHHh-hhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018388          235 IRDLICLLRSSV----TLSQAAVVAFFSGLS-EGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI  309 (357)
Q Consensus       235 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (357)
                      +++    +++++    +.............. ......+.+...++ .+.+..  -......++...++. +++.++.||
T Consensus       241 ~~~----l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~  312 (451)
T PF00083_consen  241 WRD----LFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-AGISNS--FLATLILGLVNFLGT-LLAIFLIDR  312 (451)
T ss_pred             eee----ccccccccccccccccccccccccccccccccccccccc-cccccc--ccccccccccccccc-ccccccccc
Confidence            223    22222    222222222222222 22333444444444 466665  112223334444444 666789999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHH
Q 018388          310 LGEAKLLSLGLFAACINMFICS  331 (357)
Q Consensus       310 ~~~~~~~~~~~~~~~i~~~~~~  331 (357)
                      +|||++++.+....+++.+.+.
T Consensus       313 ~GRr~~~i~~~~~~~~~~~~~~  334 (451)
T PF00083_consen  313 FGRRKLLIIGLLLMAICSLILG  334 (451)
T ss_pred             cccccccccccccccccccccc
Confidence            9999999998888887766553

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.86  E-value=1.5e-19  Score=163.76  Aligned_cols=298  Identities=16%  Similarity=0.158  Sum_probs=212.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHH-HHHHhhhcccchH
Q 018388           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYA-LRTLTAMVCEGSI  125 (357)
Q Consensus        47 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~~~~~~~  125 (357)
                      +.+..+.+|+.++......+..|+.+.+.||+|.|++.+.+.++..++.++..++++   +|.+++ .-++.|+ +.+..
T Consensus        77 ~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~---i~~l~lt~gvi~G~-G~~~~  152 (509)
T KOG2504|consen   77 GSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS---LWQLYLTFGVIGGL-GLGLI  152 (509)
T ss_pred             CCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhc-cchhh
Confidence            333445799999999999999999999999999999999999999999999999999   766665 4578888 77777


Q ss_pred             HHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 018388          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD  201 (357)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~  201 (357)
                      +..+...+..++ +|+|+.+.|+...+.++|..+-|.+..++    |||+.+++.+.+.+-.++.....-|.+++.++.+
T Consensus       153 ~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~  231 (509)
T KOG2504|consen  153 YLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNE  231 (509)
T ss_pred             hcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchh
Confidence            777777777665 58999999999999999988877776664    9999999998887666666555555333321110


Q ss_pred             -CCCcc--------------ccccccccccc---CCCCCCCCccccccchhHHHHH----HhhhcccchHHHHHHHHHHH
Q 018388          202 -DLTRP--------------IITEETEGVNQ---NESNSPVKIPVCKKIPSIRDLI----CLLRSSVTLSQAAVVAFFSG  259 (357)
Q Consensus       202 -~~~~~--------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  259 (357)
                       .|...              ...........   ...+...+.+.+....+.+...    ..+++++.++...+...+..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~  311 (509)
T KOG2504|consen  232 EKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAY  311 (509)
T ss_pred             hhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHH
Confidence             00000              00000000000   0000000000000000111111    12455899999999999999


Q ss_pred             HhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccc--hhHHHHHHHHHHHHHHHHHHhcCcch
Q 018388          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFICSISWSAW  337 (357)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~  337 (357)
                      ..+.....++|.|.++. |.+..+++++.++.++..++++ ++.|++.|+..  +++...++.+..+++.....+.++.+
T Consensus       312 ~g~~~p~~~l~~~~~~~-g~~~~~aa~l~Siigi~~i~gR-i~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~  389 (509)
T KOG2504|consen  312 LGFNVPFVYLPSYAKSL-GLSSNDAAFLLSIIGVSDIIGR-IILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYV  389 (509)
T ss_pred             HHHHHHHHHHHHHHhhc-CCChhhhHHHHHHHHHhhhhhh-hhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            99999999999999965 9999999999999999999999 88999999877  45566777777788887788888876


Q ss_pred             HHHH-HHHHHHhhhc
Q 018388          338 VPYA-TTAFSVLVVF  351 (357)
Q Consensus       338 ~~~~-~~~~~~~~~~  351 (357)
                      .++. +.++|+..|.
T Consensus       390 ~l~~~~~~fG~~~g~  404 (509)
T KOG2504|consen  390 GLIVFSILFGFCVGS  404 (509)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            6655 5566665443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.86  E-value=1.9e-18  Score=150.25  Aligned_cols=304  Identities=16%  Similarity=0.152  Sum_probs=198.2

Q ss_pred             chhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhh
Q 018388            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (357)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l   84 (357)
                      .++++.+......+...+..+...|.+|..+++       ..+++..++|.+.++..+...+.+|+.|.++||.|.||-+
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~-------~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~L   76 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQ-------VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHL   76 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHH
Confidence            346678888888899999999999999999975       3578888999999999999999999999999999977765


Q ss_pred             hHHHHHHHH--H-HHHHHHccc--hhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHh
Q 018388           85 TLPLTLSII--P-LAILAYRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC  159 (357)
Q Consensus        85 ~~~~~~~~~--~-~~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (357)
                      +.......+  + .....+.|-  .+.+...+++-+..|+ .-....|+..+++.+..  ++.+.-.|-.....++|.++
T Consensus        77 l~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~-~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai  153 (412)
T PF01306_consen   77 LWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGL-VFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAI  153 (412)
T ss_dssp             HHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTT-TTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHH
Confidence            544332221  2 222222221  0002223333344454 23344477777777664  33444566777888888888


Q ss_pred             hHhhhHHh---hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHH
Q 018388          160 GTLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (357)
Q Consensus       160 g~~~~~~l---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (357)
                      +..++|.+   +.+..||+....+++..++..+..|+.+++.+.+ |                     .+..+++..+.+
T Consensus       154 ~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~-~---------------------~~~~~~~~~~~~  211 (412)
T PF01306_consen  154 ASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA-D---------------------ALGAKKDKVSLK  211 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS-T---------------------TSSS------HH
T ss_pred             HHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh-c---------------------ccccCCCCCcHH
Confidence            88888876   4567788766655554444333333333222111 0                     000112222455


Q ss_pred             HHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhc---ccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchh
Q 018388          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF---HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA  313 (357)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  313 (357)
                      +..+.+ |+|++|.+.+........+..+....|.|.+..+   +.+....|++.+.-.+..++.. .+.+++.+|+|.|
T Consensus       212 ~~~~l~-k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m-~~~p~li~rig~k  289 (412)
T PF01306_consen  212 DVLSLF-KMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMM-FFSPWLINRIGAK  289 (412)
T ss_dssp             HHHHHT-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HH
T ss_pred             HHHHHh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHH-HHHHHHHHhcChH
Confidence            655544 5889998888777777777777767777776543   3445668888888888888877 8889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcchHHHHH
Q 018388          314 KLLSLGLFAACINMFICSISWSAWVPYAT  342 (357)
Q Consensus       314 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  342 (357)
                      +.++++..+..+-.+..++.++.+.+...
T Consensus       290 ~~Lllag~i~~iRi~~~~~~~~~~~i~~~  318 (412)
T PF01306_consen  290 NLLLLAGVIMAIRIIGSGFATNPWVISLI  318 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--SHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence            99999999999999999999888765543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09669 putative symporter YagG; Provisional

Probab=99.86  E-value=5.2e-19  Score=160.62  Aligned_cols=300  Identities=12%  Similarity=0.056  Sum_probs=187.2

Q ss_pred             HHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----cCcchhhh-HHHH
Q 018388           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAMLT-LPLT   89 (357)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr----~Grk~~l~-~~~~   89 (357)
                      +..+-...........++.|..+       ..+++..+.|.+.++..+...+..|+.|.++||    +||||.++ .+.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~~~t~-------~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~   88 (444)
T PRK09669         16 LGDTACNLVWQTVMLFLAYFYTD-------VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAI   88 (444)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHH
Confidence            34444444445555666777654       567888999999999999999999999999998    78865544 6666


Q ss_pred             HHHHHHHHHHHccch---hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCC-ccchhHHHHHHHHHHHHHHHhhHhhh-
Q 018388           90 LSIIPLAILAYRRSI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLAA-  164 (357)
Q Consensus        90 ~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~-  164 (357)
                      ..++...+....++.   ...+++++..++.+. ..........++.+|+.+ ++||++..++......+|..+++.+. 
T Consensus        89 ~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~-~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~  167 (444)
T PRK09669         89 PFGVVCLLTFYTPDFGATGKIIYACVTYILLSL-VYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIAL  167 (444)
T ss_pred             HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666555555432   113455555656565 333455567788999884 68899888888888888776665432 


Q ss_pred             ---HH-------hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchh
Q 018388          165 ---RF-------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPS  234 (357)
Q Consensus       165 ---~~-------l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (357)
                         ..       .+|+..+.+.+++..+..+..++..+|.++++++                              ++.+
T Consensus       168 pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~------------------------------~~~~  217 (444)
T PRK09669        168 PLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVD------------------------------NSSS  217 (444)
T ss_pred             HHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCc------------------------------CCCC
Confidence               22       2567777777776665555555555553221100                              0012


Q ss_pred             HHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhH
Q 018388          235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (357)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (357)
                      .++..+.+++||.++...+..++............+.|.++..+. ++..+.+.....+..+++. ++.+++.||+|+|+
T Consensus       218 ~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gk~~  295 (444)
T PRK09669        218 VWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGA-LLSERLLGKFDRVR  295 (444)
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHH
Confidence            233344566788888887777776666655555555566655442 3333444444445555555 77889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh-cC-cchHHHH-HHHHHHhhhcccc
Q 018388          315 LLSLGLFAACINMFICSI-SW-SAWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       315 ~~~~~~~~~~i~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~p  354 (357)
                      ....+.....+....+.+ .+ +.+..++ ..+.+++.+...|
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  338 (444)
T PRK09669        296 AFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTP  338 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHH
Confidence            988887666544333323 22 3333333 3455666665544

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.86  E-value=1.2e-20  Score=161.21  Aligned_cols=322  Identities=14%  Similarity=0.112  Sum_probs=211.8

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHH
Q 018388           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (357)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~   90 (357)
                      .+.-.+.|.+..+...+.++.|.+....-+....+-+.+.-..+.+..+..++..++++++|++.||+|||+++...+++
T Consensus        44 ~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liI  123 (538)
T KOG0252|consen   44 IIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELII  123 (538)
T ss_pred             HHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHH
Confidence            34455667778888887777777665533333333456667779999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccch----hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           91 SIIPLAILAYRRSI----SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        91 ~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      ..+++++++++...    ...+++...|++.|+ +.|..+|.+.+..+|...+++||...+..-+..+.|...|.+++-.
T Consensus       124 mIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGi-GIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~I  202 (538)
T KOG0252|consen  124 MIICSALSGLSVGTTSPLGVMMTLCFFRFLLGI-GIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALI  202 (538)
T ss_pred             HHHHHHHhccCCCCCCCcchhhHHHHHHHHhhc-cccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHH
Confidence            99999887776321    336789999999999 8888999999999999999999999988888888887777655433


Q ss_pred             h-------------------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC-CCcccc-cccccccccCCCCCCCC
Q 018388          167 L-------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDD-LTRPII-TEETEGVNQNESNSPVK  225 (357)
Q Consensus       167 l-------------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~  225 (357)
                      +                   -||..+.+.++.++.. +...+.+||+++.+.... |.+.+. ...+......+++....
T Consensus       203 v~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~-ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~  281 (538)
T KOG0252|consen  203 VSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV-LYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAE  281 (538)
T ss_pred             HHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH-HHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccc
Confidence            1                   4888888887775544 444567899876541100 000000 00000000000000001


Q ss_pred             ccccccchhHHHHHHhhhcc--cchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHH--------HHHHHHHHH
Q 018388          226 IPVCKKIPSIRDLICLLRSS--VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFAD--------LMLIAGLAG  295 (357)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~  295 (357)
                      ......++..+...+.+.+.  +.+...+...|+.-.+++....+....+++. |+.+.+..+        ...+....+
T Consensus       282 ~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~i-g~~~~~~~~~~~~~vA~~~~iia~~~  360 (538)
T KOG0252|consen  282 SDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAI-GVIPSANTYHELFKVAEGNLIIAVCS  360 (538)
T ss_pred             cCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhh-ccCCCcchHHHHHHHHHHHHHHHHHc
Confidence            01111111122222222222  4455566666777777777777777777765 776655444        122222222


Q ss_pred             HHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCc
Q 018388          296 TISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWS  335 (357)
Q Consensus       296 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  335 (357)
                      .+.+..+...++|++|||++.+.++.++.+..+.++...+
T Consensus       361 ~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~  400 (538)
T KOG0252|consen  361 TVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN  400 (538)
T ss_pred             cCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc
Confidence            2322245566889999999999999999999888877655

>PRK09848 glucuronide transporter; Provisional

Probab=99.86  E-value=7.6e-19  Score=159.78  Aligned_cols=306  Identities=12%  Similarity=0.005  Sum_probs=188.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc----Ccchhh
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY----GRKAML   84 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~----Grk~~l   84 (357)
                      ......+..+...+...+..+.++.|.++       ..+++..+.|.+.++..+...+..|++|+++||.    ||||.+
T Consensus         9 ~~~~yg~g~~~~~~~~~~~~~~l~~y~~~-------~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~   81 (448)
T PRK09848          9 TIVGYSLGDVANNFAFAMGALFLLSYYTD-------VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPF   81 (448)
T ss_pred             HHHhhccchHHhHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHH
Confidence            33444456666777777777888888765       4566778899999999999999999999999996    777765


Q ss_pred             -hHHHHHHHHHHHHHHHcc-c--h-hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCC-ccchhHHHHHHHHHH-----
Q 018388           85 -TLPLTLSIIPLAILAYRR-S--I-SFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVL-----  153 (357)
Q Consensus        85 -~~~~~~~~~~~~~~~~~~-~--~-~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~-----  153 (357)
                       ..+.+...+...+....+ .  . ...+..+....+.++ +.+...+...++..+..+ ++||.+..+....+.     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~  160 (448)
T PRK09848         82 LLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGL-CYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFV  160 (448)
T ss_pred             HHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHH-HHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence             455554444443332112 1  0 112333444455565 445565666677776665 467888766655433     


Q ss_pred             HHHHHhhHhhhHHhh------hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCcc
Q 018388          154 SASFVCGTLAARFLS------TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIP  227 (357)
Q Consensus       154 ~~g~~~g~~~~~~l~------~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (357)
                      .++..++|.+++..+      |.....+.+++..+..++.....||+++++++                           
T Consensus       161 ~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~---------------------------  213 (448)
T PRK09848        161 CLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA---------------------------  213 (448)
T ss_pred             HHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc---------------------------
Confidence            345556676665431      11111222223223223333334443221111                           


Q ss_pred             ccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhh
Q 018388          228 VCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLA  307 (357)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  307 (357)
                          +.+.++..+.+++||.++...+..++............|.|.++.+|.++...+.......+...++. .+.+++.
T Consensus       214 ----~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~l~~~l~  288 (448)
T PRK09848        214 ----QPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASA-PLVPGMV  288 (448)
T ss_pred             ----CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence                01233334456678999888888888888888888888889998888776554443333345555666 7889999


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHHhcC--cchHHHH-HHHHHHhhhcccc
Q 018388          308 PILGEAKLLSLGLFAACINMFICSISW--SAWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       308 ~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~p  354 (357)
                      ||+++|+.+..+..+..++.+.+.+.+  +.+..+. ..+.++|.+...|
T Consensus       289 ~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~  338 (448)
T PRK09848        289 ARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMT  338 (448)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988888877766644  2333333 3445666655543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.85  E-value=5.2e-18  Score=150.05  Aligned_cols=283  Identities=21%  Similarity=0.228  Sum_probs=202.8

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC-cchhhhHHHHHH
Q 018388           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-RKAMLTLPLTLS   91 (357)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~G-rk~~l~~~~~~~   91 (357)
                      +....++..+..+...|.+|.++++        .+.+..++|.+.++..+...++.+++|.++||++ +||.+.++.++.
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~--------~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~   78 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES--------RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLS   78 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence            4455677778888899999999874        3577788999999999999999999999999986 477777777777


Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHh-----hhHH
Q 018388           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL-----AARF  166 (357)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~-----~~~~  166 (357)
                      ++........++   ++.+++..++..+ ......|...++..+...  ++++-.|-.....++|.+++..     +.+.
T Consensus        79 ~~~~~~~~~~~~---f~~~~~~~~l~~~-~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~  152 (400)
T PF03825_consen   79 ALALLLLAFSSS---FWWLFVIMLLFSF-FFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGY  152 (400)
T ss_pred             HHHHHHHHHhcc---HHHHHHHHHHHHH-HHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhh
Confidence            777666677777   6767777777776 445556788888877775  3445556666666777666533     2233


Q ss_pred             hhh---HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhh
Q 018388          167 LST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (357)
Q Consensus       167 l~~---~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (357)
                      .++   ...+++.+....+... ..+.+|+.+++++.+++                          .++...++.++ +.
T Consensus       153 ~~~~~~~~~~~i~~~~~~ll~~-~~l~lp~~~~~~~~~~~--------------------------~~~~~~~~~~~-ll  204 (400)
T PF03825_consen  153 LGISGTSLIFYIAAILSLLLAG-FALFLPKTPPKRSAKES--------------------------VKKLLGLDALK-LL  204 (400)
T ss_pred             hccccccHHHHHHHHHHHHHHH-HHHhCCCCccccccCCC--------------------------cccccchHHHH-Hh
Confidence            222   2445555544333322 23456776633322100                          01111233334 44


Q ss_pred             cccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHH
Q 018388          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (357)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (357)
                      |+|++...++..++.+.....++++.+.|+++.-|.+....+...+...+..++.- +..+++.+|+|.++++.++.+..
T Consensus       205 k~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f-~~~~~~~~r~g~~~ll~~a~~~~  283 (400)
T PF03825_consen  205 KNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFF-FFSGRFLKRFGIKWLLLLALVAY  283 (400)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHH
Confidence            58888888889999999999999999999999844777777888887777777776 88899999999999999999999


Q ss_pred             HHHHHHHHhc-CcchH
Q 018388          324 CINMFICSIS-WSAWV  338 (357)
Q Consensus       324 ~i~~~~~~~~-~~~~~  338 (357)
                      ++=..+++.. ++.+.
T Consensus       284 ~vR~~l~a~~~~~~~~  299 (400)
T PF03825_consen  284 AVRWLLYAYFSDPWPF  299 (400)
T ss_pred             HHHHHHHHHhcCCcHH
Confidence            9999888887 44443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.83  E-value=1.9e-18  Score=153.96  Aligned_cols=324  Identities=31%  Similarity=0.511  Sum_probs=226.9

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCC-CccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPG-LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      ..+....++..++.++..+..........+.. ++....+....+.......+...+.++..|.++||+|||..+.....
T Consensus        21 ~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~  100 (463)
T KOG2816|consen   21 RHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLF  100 (463)
T ss_pred             hHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHH
Confidence            34455566666776666655544444322211 22222222333444444578889999999999999999999999999


Q ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHhhh-cccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-
Q 018388           90 LSIIPLAILAYRRSISFFYAYYALRTLTAM-VCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (357)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~-~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-  167 (357)
                      ...+......+..    +|. ++   +.++ ++.+.......++++|...+|+|....++.+.....+..++|.+++++ 
T Consensus       101 ~~~l~~~~~~~~~----~~~-~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~  172 (463)
T KOG2816|consen  101 GTILPALCLLFQG----YWF-FL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV  172 (463)
T ss_pred             HHHHhHHHHHHHH----HHH-hh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            8888877777655    232 22   4444 334455678899999999999999999999999999999999999886 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhc
Q 018388          168 ---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (357)
Q Consensus       168 ---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (357)
                         +.-.+|.+..+..++..+...+++||+..++++++.            ... +..+.+.......+..+...+ ..+
T Consensus       173 ~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~-~~~  238 (463)
T KOG2816|consen  173 KFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDA------------TLR-ELTPGSLDSSHVADAFQSLTK-VGP  238 (463)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccc------------ccc-ccCCCcccchhhhhhhhhhcc-cCC
Confidence               667789999888888888888999998766555310            000 000000001111111122111 333


Q ss_pred             ccchHHHHHHHHHHHHhhhhhhH-HHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHH
Q 018388          245 SVTLSQAAVVAFFSGLSEGGMQA-SFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (357)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (357)
                      +|..+.+....+........-.. .++.|.+.++||+..+.+.+.+..+....+++.+..+.+.+.++.|+.+..|+...
T Consensus       239 ~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~  318 (463)
T KOG2816|consen  239 DRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSE  318 (463)
T ss_pred             CccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHH
Confidence            45555555555554444443333 55789999999999999999999999999999777778999999999999999999


Q ss_pred             HHHHHHHHhcCcchHHHHHHHHHHhhhcccccC
Q 018388          324 CINMFICSISWSAWVPYATTAFSVLVVFATPSV  356 (357)
Q Consensus       324 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  356 (357)
                      .+....+++.++.|..+....+.....+..|+.
T Consensus       319 ~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~  351 (463)
T KOG2816|consen  319 FLQLLLFAFATETWMMFAAGVVVALAGIVFPAI  351 (463)
T ss_pred             HHHHHHHHHhccchhhhHHHHHHHhhcchhHHH
Confidence            999999999999999998877777777777653

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.83  E-value=1.2e-17  Score=146.73  Aligned_cols=310  Identities=14%  Similarity=0.068  Sum_probs=227.3

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----cCcchhh-
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAML-   84 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr----~Grk~~l-   84 (357)
                      ...-....+...+........+..+..|       ..++++...|.+..+.-+-.++..|+.|.++||    +||+|++ 
T Consensus        14 ki~Yg~gd~~~~~~~~~~~~yLl~fYTd-------v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~l   86 (467)
T COG2211          14 KIGYGLGDFASNFAFGIVVLYLLFFYTD-------VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWL   86 (467)
T ss_pred             HHhhcchhhHHHHHHHHHHHHHHHHHhc-------ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHH
Confidence            3444556666666667777777777754       678889999999999999999999999999995    7886654 


Q ss_pred             hHHHHHHHHHHHHHHHccch---hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCC-ccchhHHHHHHHHHHHHHHHhh
Q 018388           85 TLPLTLSIIPLAILAYRRSI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCG  160 (357)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g  160 (357)
                      +.+.+..++.+.++-.+++.   ......++...+.++ +-........++.++.++ ++||.+..++-+...++|..+.
T Consensus        87 L~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l-~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~  165 (467)
T COG2211          87 LWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGL-GYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLV  165 (467)
T ss_pred             HHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHH-HHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            46667888888888877741   113445566666677 555565667788888876 7899999999999999886554


Q ss_pred             Hhhh----HH-------hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCcccc
Q 018388          161 TLAA----RF-------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVC  229 (357)
Q Consensus       161 ~~~~----~~-------l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (357)
                      ..+.    ..       .||+..-.+.+++..+..+.+++..+|...++++.                          +.
T Consensus       166 ~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~--------------------------~~  219 (467)
T COG2211         166 AVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPT--------------------------KT  219 (467)
T ss_pred             HHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccC--------------------------cc
Confidence            3222    22       26777777777777777777777777765433321                          01


Q ss_pred             ccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018388          230 KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI  309 (357)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (357)
                      ..+.++++....+++||.++..++..++.........+...+|.+...|.+...............+++. ++.+++.+|
T Consensus       220 ~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~-~~~p~L~~~  298 (467)
T COG2211         220 GVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGL-ILWPRLVKK  298 (467)
T ss_pred             cccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence            1233556656667789999999988888888888888999999999989888886676666666666656 888999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHhcCcc--hHHHH-HHHHHHhhhcccc
Q 018388          310 LGEAKLLSLGLFAACINMFICSISWSA--WVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       310 ~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~p  354 (357)
                      +|+|++...+.++..++.+++.+.+..  +..++ .++.++|.+...|
T Consensus       299 ~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~  346 (467)
T COG2211         299 FGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANP  346 (467)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccc
Confidence            999999999999999998888887632  33333 3455666666654

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.82  E-value=6.5e-17  Score=145.83  Aligned_cols=281  Identities=14%  Similarity=0.123  Sum_probs=196.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH-HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHH
Q 018388           50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL-PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL  128 (357)
Q Consensus        50 ~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  128 (357)
                      ....++..++..+...+..|+.|.++|+-|+||.++. ...+..+.+.++.+.+. +.++...+.-++.-+ +.+.....
T Consensus        69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~-~~~~~~~~l~iia~v-~~~~~~vf  146 (477)
T PF11700_consen   69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSP-GQWWLALVLFIIANV-GYEASNVF  146 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHH-HHHHHHHH
Confidence            3456788999999999999999999999998776664 44555566666666522 223333333334333 44455567


Q ss_pred             HHHHHhhCCCccch--------------------------hHHHHHHHHHHHHHHHhhHhhhHHh------------hhH
Q 018388          129 ALAYVADNISERQR--------------------------ASAFGILLGVLSASFVCGTLAARFL------------STT  170 (357)
Q Consensus       129 ~~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~g~~~~~~l------------~~~  170 (357)
                      ..+++.|..+++++                          ++..+.-.....+|.++.-++.-.+            +-|
T Consensus       147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r  226 (477)
T PF11700_consen  147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR  226 (477)
T ss_pred             HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence            89999999998888                          8888887777777776654443221            237


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHH
Q 018388          171 SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ  250 (357)
Q Consensus       171 ~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (357)
                      ..+.+.++..++..+...+.+||.+++++.+..                     ...........++..+..+|.|.+..
T Consensus       227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~---------------------~~~~~~g~~~l~~t~k~~~~~~~~~~  285 (477)
T PF11700_consen  227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSG---------------------SSYLRFGFKRLWRTFKEIRKLRQLFL  285 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc---------------------hhHHHHHHHHHHHHHHHHHhChHHHH
Confidence            788888887777777777888887653222100                     00000111123334455677889999


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchh--HHHHHHHHHHHHHHH
Q 018388          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA--KLLSLGLFAACINMF  328 (357)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~  328 (357)
                      .++..+++.-+...+......|.++.+|++..+...+.....+.++++. ++.+++.||+|.|  +++..+.....+..+
T Consensus       286 fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga-~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~  364 (477)
T PF11700_consen  286 FLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGA-LLFGWLQDRFGPKTKRTLLISLILWIIIPL  364 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998 8889999999998  777777766644332


Q ss_pred             HHHh--------cCcchHHHH-HHHHHHhhhcccc
Q 018388          329 ICSI--------SWSAWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       329 ~~~~--------~~~~~~~~~-~~~~~~~~~~~~p  354 (357)
                      .-.+        ..+.+.+++ ..+.|+..|..++
T Consensus       365 ~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs  399 (477)
T PF11700_consen  365 YGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQS  399 (477)
T ss_pred             HHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHH
Confidence            2222        345556665 5667777665544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PTZ00207 hypothetical protein; Provisional

Probab=99.82  E-value=1.5e-17  Score=152.08  Aligned_cols=145  Identities=12%  Similarity=0.114  Sum_probs=117.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHc------cchhHHHHHHHHHHHhh
Q 018388           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR------RSISFFYAYYALRTLTA  118 (357)
Q Consensus        45 ~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~r~l~G  118 (357)
                      +++++..+.+++.++. .....+.++.|+++||+|||+++.++.++..+++++++++      ++   ++.+++.|++.|
T Consensus        56 ~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s---~~~l~l~r~l~G  131 (591)
T PTZ00207         56 RYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS---VVRLSVYNGLMT  131 (591)
T ss_pred             HhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc---HHHHHHHHHHHH
Confidence            4455556667776663 3345677789999999999999999999999999999987      46   889999999999


Q ss_pred             hcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHh-hHhhhHHh--hhHHHHHHHHHHHHHHHHHHHHhccCCC
Q 018388          119 MVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC-GTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (357)
Q Consensus       119 ~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l--~~~~~f~~~~~~~~~~~~~~~~~~~e~~  195 (357)
                      + +.+...+.....+.+++| ++||++.|+.....++|..+ +++..+++  +|++.|++.+++.++..++.+.++++++
T Consensus       132 ~-G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        132 L-GCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             H-HHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence            9 667777888888999986 78999999999999999874 66666665  7888888888888877777776666554

>TIGR01272 gluP glucose/galactose transporter

Probab=99.81  E-value=6.4e-18  Score=145.37  Aligned_cols=218  Identities=11%  Similarity=0.058  Sum_probs=162.8

Q ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-------------------
Q 018388          107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-------------------  167 (357)
Q Consensus       107 ~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-------------------  167 (357)
                      ++.++++-++.|. +.+..++..+.++++..++|++++.+++.+.++++|.++||.+++.+                   
T Consensus        10 ~~~~l~~~f~~g~-G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~   88 (310)
T TIGR01272        10 YVLFLGALFVLAS-GLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA   88 (310)
T ss_pred             HHHHHHHHHHHHh-hHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence            8889999999999 88999999999999999999999999999999999999999998742                   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHH-HHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcc
Q 018388          168 -STTSAFQAATIVSMLAAAYM-RVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (357)
Q Consensus       168 -~~~~~f~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (357)
                       .|+++|++.+.+..+..+.. ...+||.+++++++                  .  +.++.  .   ..++    .+++
T Consensus        89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~------------------~--~~~~~--~---~~~~----~~~~  139 (310)
T TIGR01272        89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVAR------------------V--SSGDT--T---QKTS----AFQF  139 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccc------------------c--ccccc--c---chhh----HHhh
Confidence             47889987766644443332 22234432111110                  0  00000  0   0011    2346


Q ss_pred             cchHHHHHHHHHHHHhhhhhhHHHHHhhhhh--cccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHH
Q 018388          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (357)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  323 (357)
                      |.++...+..+++...+.+...|.+.|+++.  +|+++.+.+...+....+.++++ ++.+++.||+++|+.+..+..+.
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr-~~~~~l~~r~g~~~~l~~~~~l~  218 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGR-FIGSAVMPMISQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHH
Confidence            6777778888888888999999999999864  68999999999999999999998 99999999999999988888888


Q ss_pred             HHHHHHHHhcCcchHHHHHHHHHHhhhccccc
Q 018388          324 CINMFICSISWSAWVPYATTAFSVLVVFATPS  355 (357)
Q Consensus       324 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  355 (357)
                      .++.++....++....+...+++++.+..+|.
T Consensus       219 ~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~  250 (310)
T TIGR01272       219 VLLSIGAALTHGYVAMWFVLALGLFNSIMFPT  250 (310)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence            77766555555444444455677888777775

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11462 putative transporter; Provisional

Probab=99.81  E-value=1.7e-16  Score=144.30  Aligned_cols=271  Identities=11%  Similarity=0.003  Sum_probs=179.0

Q ss_pred             HHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----cCcchhhh-HHH
Q 018388           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAMLT-LPL   88 (357)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr----~Grk~~l~-~~~   88 (357)
                      .++.+.......+....+..+..|       ..+++....|.+..+.-+-.++..|+.|.++||    +||||+++ ++.
T Consensus        15 g~g~~~~~~~~~~~~~~l~~fyt~-------~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~   87 (460)
T PRK11462         15 GMGDAASHIIFDNVMLYMMFFYTD-------IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGA   87 (460)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHH-------hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHH
Confidence            344444555556666666777654       567888899999999999999999999999996    79877665 565


Q ss_pred             HHHHHHHHHHHHccch---hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCC-ccchhHHHHHHHHHHHHHHHhhHhhh
Q 018388           89 TLSIIPLAILAYRRSI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLAA  164 (357)
Q Consensus        89 ~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~  164 (357)
                      +..+++..++...++.   .....+.+..++..+ +.........++.+|..+ +|||++..++...+..+|..+++.+.
T Consensus        88 i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~-~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~  166 (460)
T PRK11462         88 LPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTL-LYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLM  166 (460)
T ss_pred             HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHH-HHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777776665555431   113344555555565 445555678888899987 78999999999999988877765543


Q ss_pred             HH----h-------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccch
Q 018388          165 RF----L-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIP  233 (357)
Q Consensus       165 ~~----l-------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (357)
                      ..    .       +|+....+.+++..+...+.+...+|.++.+++                               +.
T Consensus       167 ~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~-------------------------------~~  215 (460)
T PRK11462        167 MPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPT-------------------------------TT  215 (460)
T ss_pred             HHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCcc-------------------------------CC
Confidence            22    2       456655566655555544444444443211110                               11


Q ss_pred             hHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchh
Q 018388          234 SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA  313 (357)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  313 (357)
                      +.++..+...+||.++......++..............|.++..|.+ ...+.+.....+..+++. .+++++.||+++|
T Consensus       216 ~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~-~l~~~l~~r~gkk  293 (460)
T PRK11462        216 SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTP-EVFVAFLTTYCVGNLIGS-ALAKPLTDWKCKV  293 (460)
T ss_pred             CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCCh-HHHHHHHHHHHHHHHHHH-HHHHHHHHHhChH
Confidence            24455555667888877776666666666665666666666665543 334566667777777777 8889999999998


Q ss_pred             HHHHHHHHHHHH
Q 018388          314 KLLSLGLFAACI  325 (357)
Q Consensus       314 ~~~~~~~~~~~i  325 (357)
                      +....+.....+
T Consensus       294 ~~~~~~~~~~~~  305 (460)
T PRK11462        294 TIFWWTNALLAV  305 (460)
T ss_pred             HHHHHHHHHHHH
Confidence            887655444444

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.79  E-value=1.3e-17  Score=146.68  Aligned_cols=253  Identities=15%  Similarity=0.153  Sum_probs=183.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCc-chhh
Q 018388            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAML   84 (357)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Gr-k~~l   84 (357)
                      .+|.+++..+.+++.....+++.|..-.|.++.      +.+.+....|++.++..++.++++|..|+++.|.++ |+++
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l------D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl  105 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL------DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL  105 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeecchhhhhc------CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence            467888999999999999999999988888762      223334567999999999999999999999999998 9999


Q ss_pred             hHHHHHHHHHHHHH-HHccchh-HHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHh
Q 018388           85 TLPLTLSIIPLAIL-AYRRSIS-FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (357)
Q Consensus        85 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (357)
                      +.+.++..+++++. .+..... ..+.++++|++.|+ +.+.. ....+|+++....++|.|+++....+..+|.++||.
T Consensus       106 i~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gv-g~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~  183 (488)
T KOG2325|consen  106 IVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGV-GVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPT  183 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCc-CcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHH
Confidence            99999999999998 4432222 47899999999999 65666 689999999999999999999999999999999998


Q ss_pred             hhHHh------h-----------hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCC
Q 018388          163 AARFL------S-----------TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVK  225 (357)
Q Consensus       163 ~~~~l------~-----------~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (357)
                      ++..+      |           +..+-|+.+++.++..+...++++|..+...++...            +++++   +
T Consensus       184 ~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~------------~~~~~---~  248 (488)
T KOG2325|consen  184 IQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKR------------SVEEE---K  248 (488)
T ss_pred             HHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccc------------cchhh---c
Confidence            87654      1           145778888888888888888889887665443110            00000   0


Q ss_pred             ccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHH
Q 018388          226 IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLM  288 (357)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  288 (357)
                      .+.++...+..+       .+..+.+.+..+...+......+..+.+....++++.+++....
T Consensus       249 ~~~~~~~~~~~d-------~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~  304 (488)
T KOG2325|consen  249 SDIEKVKKPKLD-------WVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYN  304 (488)
T ss_pred             cchhhhccCChh-------HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhh
Confidence            000000000011       12233344455555555555567777777777888877744433

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.78  E-value=1.9e-16  Score=132.03  Aligned_cols=157  Identities=15%  Similarity=0.023  Sum_probs=129.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccc
Q 018388           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (357)
Q Consensus        44 ~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~  123 (357)
                      ..++.+.-+..++......+..+++..||..+|++|||+.+.+......+...+.+.++|   +.++.+.|.+.|+ +.|
T Consensus       106 ~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn---f~~L~~f~~l~~~-g~g  181 (528)
T KOG0253|consen  106 EVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN---FASLCVFRALWGF-GVG  181 (528)
T ss_pred             hhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC---eehhhHHHHHHhc-cCC
Confidence            356688888899999999999999999999999999999999999999999999999999   8888999999999 556


Q ss_pred             hHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH----hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 018388          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (357)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~----l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~  199 (357)
                      . .|...++-.|..|..+|..-+-.. ..+.+|.+....++-.    +||||..........+ +....+++||+++..-
T Consensus       182 g-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~-~a~f~~w~~ESpRf~~  258 (528)
T KOG0253|consen  182 G-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMF-AARFLVWVYESPRFYL  258 (528)
T ss_pred             C-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH-HHHHHhhcccCcchhh
Confidence            6 488899999999988888776666 8889998888766644    4999988777755333 3444567899998765


Q ss_pred             CCCCCccc
Q 018388          200 DDDLTRPI  207 (357)
Q Consensus       200 ~~~~~~~~  207 (357)
                      .+.|..++
T Consensus       259 ~~G~~~kA  266 (528)
T KOG0253|consen  259 AKGDDYKA  266 (528)
T ss_pred             hcCChHHH
Confidence            55554444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.77  E-value=1.2e-15  Score=137.51  Aligned_cols=167  Identities=11%  Similarity=0.017  Sum_probs=129.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-Ccchhh
Q 018388            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAML   84 (357)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-Grk~~l   84 (357)
                      .++.++.++...+...++...+...+|.|+.+       +++.+..+.+.+.+.+.....++.+++|+++||+ ||||.+
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~-------~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i   79 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTN-------QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV   79 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH
Confidence            35667777888888888888888899999875       3455667778899999999999999999999999 999999


Q ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCcc--chhHHHHHHHHHHHHHHHhhHh
Q 018388           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASFVCGTL  162 (357)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~~g~~  162 (357)
                      +.+.++..++..++...++.  ...++++..+.++ +.|...+...++++|.+|++  +|.++.++.....++|..++|.
T Consensus        80 liG~il~~lg~lll~~~~~~--~~~~~l~l~li~i-G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~  156 (493)
T PRK15462         80 MLGALLMAIGHVVLGASEIH--PSFLYLSLAIIVC-GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI  156 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH-hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence            99999999988777654321  1222333223333 33455566788999999875  6888999999999999999999


Q ss_pred             hhHHh----hhHHHHHHHHHHHHH
Q 018388          163 AARFL----STTSAFQAATIVSML  182 (357)
Q Consensus       163 ~~~~l----~~~~~f~~~~~~~~~  182 (357)
                      +.+++    ||++.|.+.++..++
T Consensus       157 l~g~L~~~~Gw~~~F~iaaigm~l  180 (493)
T PRK15462        157 ACGYAQEEYSWAMGFGLAAVGMIA  180 (493)
T ss_pred             HHHHHHhhhChHHHHHHHHHHHHH
Confidence            99886    899999987654333

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.77  E-value=1.7e-16  Score=135.42  Aligned_cols=304  Identities=13%  Similarity=0.069  Sum_probs=213.4

Q ss_pred             HHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh-HHHHHHHHHHHHHHHcc
Q 018388           24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-LPLTLSIIPLAILAYRR  102 (357)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~-~~~~~~~~~~~~~~~~~  102 (357)
                      ...+..++|.|.++..+.+..+..-+....|...++..+...+.+|+.|.++|+.|+||..+ ....+..++..+..+++
T Consensus        31 ~ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~  110 (438)
T COG2270          31 AIVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIP  110 (438)
T ss_pred             eeeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhC
Confidence            34455677888887554432233334456799999999999999999999999999877666 45555566666777766


Q ss_pred             chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh--HH--------------
Q 018388          103 SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA--RF--------------  166 (357)
Q Consensus       103 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~--------------  166 (357)
                      +...++..++.-.+..+ +.........+++.|..++++-++..+.-.....+|..+--+..  ..              
T Consensus       111 ~~s~~~~~l~~~il~~i-~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~  189 (438)
T COG2270         111 PGSYLLLLLLFLILASI-GFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLG  189 (438)
T ss_pred             CCchHHHHHHHHHHHHH-hcchhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeec
Confidence            53335666666777777 55566678999999999988877766655444445443322111  10              


Q ss_pred             ------hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHH
Q 018388          167 ------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (357)
Q Consensus       167 ------l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (357)
                            ..-|..+.+.++-.++..+..++..|+.++...+.                       .+...+.-+.+++.++
T Consensus       190 l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~-----------------------~~~l~~g~k~L~~t~k  246 (438)
T COG2270         190 LPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPP-----------------------PTALRNGFKELKSTFK  246 (438)
T ss_pred             cCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccc-----------------------hHHHHHHHHHHHHHHH
Confidence                  12366777777766666666666666654322110                       0000111123344455


Q ss_pred             hhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHH
Q 018388          241 LLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGL  320 (357)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  320 (357)
                      ..++++++...+++.+++.-+..+.......|....+|++..+...+.....+.+++++ ++.|++.||++.|+++..+.
T Consensus       247 ~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~-ii~g~Ld~rfg~k~vl~~~l  325 (438)
T COG2270         247 EIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGA-IIAGFLDERFGSKPVLMIGL  325 (438)
T ss_pred             HHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCceeehHHH
Confidence            57778899999999999999999999999999998899999999999999999999998 88999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcchHHHH-HHHHHHhhhcc
Q 018388          321 FAACINMFICSISWSAWVPYA-TTAFSVLVVFA  352 (357)
Q Consensus       321 ~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~  352 (357)
                      ++..+.++...+.......+. +.+++...|-.
T Consensus       326 vi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~  358 (438)
T COG2270         326 VILSIAALYLIFLEGELDFWILGLLVGTSLGGA  358 (438)
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHhcchH
Confidence            888888766666555444444 56666665544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.76  E-value=5.3e-15  Score=126.65  Aligned_cols=279  Identities=15%  Similarity=0.102  Sum_probs=197.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC-----cchhhh-HHHHHHHHHHHHHHHc-----c-----c-hhHH
Q 018388           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-----RKAMLT-LPLTLSIIPLAILAYR-----R-----S-ISFF  107 (357)
Q Consensus        45 ~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~G-----rk~~l~-~~~~~~~~~~~~~~~~-----~-----~-~~~~  107 (357)
                      |++++....+...++..+.. ...+.+|..||+.+     ||..++ .+.+....+..+..++     .     + ..+.
T Consensus         9 EL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~   87 (403)
T PF03209_consen    9 ELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL   87 (403)
T ss_pred             HhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence            67778888888888888876 46999999999999     887766 4555555554444432     2     0 1112


Q ss_pred             --HHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-----hhHH--HHHHHHH
Q 018388          108 --YAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTS--AFQAATI  178 (357)
Q Consensus       108 --~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-----~~~~--~f~~~~~  178 (357)
                        ....+...+.|+ +.+...+...++++|..|||+|+++.++...+.-+|.+++..+.+.+     ..|.  .+...++
T Consensus        88 g~~~a~l~F~l~G~-G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~  166 (403)
T PF03209_consen   88 GLALAALAFLLYGL-GVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVAL  166 (403)
T ss_pred             HHHHHHHHHHHHHh-hHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHH
Confidence              244556677888 66666678999999999999999999999999999999999888875     1122  2333333


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHH
Q 018388          179 VSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFS  258 (357)
Q Consensus       179 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (357)
                      +.++..++..+. .|++.++..+                         ..++++.++++.++.+..+|+.+.++...++.
T Consensus       167 i~~~l~~ia~wg-~E~r~~~~~~-------------------------~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~  220 (403)
T PF03209_consen  167 IALLLNLIALWG-QEPRRSRRAA-------------------------AAERPRPPFREAWRQVWASPQARRFFVFLFLG  220 (403)
T ss_pred             HHHHHHHHHHHh-cccCCccccc-------------------------CCCCCCccHHHHHHHHHhCCChhHHHHHHHHH
Confidence            323222222222 2322221110                         11223346666677777899999999999999


Q ss_pred             HHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhh-ccchhHHHHHHHHHHHHHHHHHHh---cC
Q 018388          259 GLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP-ILGEAKLLSLGLFAACINMFICSI---SW  334 (357)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~i~~~~~~~---~~  334 (357)
                      ...+......+-+|--|.+|++..+...+....+.+..++. .+.+++.. |.++++....++....+++.++.+   ..
T Consensus       221 t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~-~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~  299 (403)
T PF03209_consen  221 TLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGM-LLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLG  299 (403)
T ss_pred             HHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999988887 56666554 778888888888888888766554   34


Q ss_pred             cchHHHH-HHHHHHhhhcc
Q 018388          335 SAWVPYA-TTAFSVLVVFA  352 (357)
Q Consensus       335 ~~~~~~~-~~~~~~~~~~~  352 (357)
                      +.+.+.. ..++|++.|+.
T Consensus       300 ~~~~~~~~~~l~G~g~G~f  318 (403)
T PF03209_consen  300 SPWLFRPGVFLLGLGNGLF  318 (403)
T ss_pred             cchHHHHHHHHHHHhhhHH
Confidence            5555555 56677777654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00788 fbt folate/biopterin transporter

Probab=99.73  E-value=7.6e-16  Score=140.09  Aligned_cols=293  Identities=12%  Similarity=0.040  Sum_probs=182.6

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC-----cchhh
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-----RKAML   84 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~G-----rk~~l   84 (357)
                      +..+....+..++. ++....++.++++       +++++..+.+...+...+...+ .+++|+++||++     ||+.+
T Consensus        28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~-------~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l   98 (468)
T TIGR00788        28 LAIGLQVLFVKGIA-GLMRLPLSPMLTD-------DLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYL   98 (468)
T ss_pred             HHHHHHHHHHhhHH-HHhhhhhhHHHHH-------hcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHH
Confidence            34444455666666 5555566666654       4567777888888888999877 555999999997     66667


Q ss_pred             hHHHHHHH-HHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHH---HHHHHHHHHHHHhh
Q 018388           85 TLPLTLSI-IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAF---GILLGVLSASFVCG  160 (357)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~~g~~~g  160 (357)
                      +++.++.. +.....+..++  ......+..++.++ +.+...++..++..|..+ |++....   +......++|.++|
T Consensus        99 ~~~~~l~~~~~~~~l~~~~~--~~~~~~~~~~l~~~-~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg  174 (468)
T TIGR00788        99 VLSGLLGSAILYGLLPGKVS--SAKVAAAFIFLAAL-AKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLIS  174 (468)
T ss_pred             HHHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHH-HHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHH
Confidence            77766653 33333333333  13333447888888 777888899999999998 5554433   33333345788888


Q ss_pred             HhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC-CCCcccccccccccccCCCCCCCCccccccchhH
Q 018388          161 TLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD-DLTRPIITEETEGVNQNESNSPVKIPVCKKIPSI  235 (357)
Q Consensus       161 ~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (357)
                      +.++|.+    +|+..|++.+.+.++. ....+++||+++....+ .+...         ..  .............+..
T Consensus       175 ~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~  242 (468)
T TIGR00788       175 SLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTYLE---------MN--MALLTLGVLANVKVQI  242 (468)
T ss_pred             HHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhcccccccccccccccch---------hh--hhhhhhhHHHHHHHHH
Confidence            8887764    7999999988886666 44456678864211110 00000         00  0000000000111223


Q ss_pred             HHHHHhhhcccchHHHHHHHHH-HHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhH
Q 018388          236 RDLICLLRSSVTLSQAAVVAFF-SGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (357)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (357)
                      ++..+. .++|.++...+..++ +.......... -.+.++..|+++.+.|......+++.+++. .+.+++.+|++.|+
T Consensus       243 ~~l~~~-l~~~~i~~~l~fifl~~~~~~~~~~~~-f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~-~~~~~~~~~~~~r~  319 (468)
T TIGR00788       243 LGLRGA-IQLLEIAKPLIFIFLSYANLPGASGSV-FCATTQCLPGGPSFSGMSKVVGNLGSLCGV-GGYDRFLKTFPYRL  319 (468)
T ss_pred             HHHHHH-HhcHHHHHHHHHHHHHHhhcCCCCcee-EEEEcccCCCCcchhhhHHHHHHHHHHHHH-HHHHHHHhhCCHHH
Confidence            344444 446777765555555 32222222211 113345579999999999999999999888 77788889999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018388          315 LLSLGLFAACINMFIC  330 (357)
Q Consensus       315 ~~~~~~~~~~i~~~~~  330 (357)
                      ++..+.++.+++....
T Consensus       320 ~l~~~~~l~~~~~~~~  335 (468)
T TIGR00788       320 LFGVTTLLYTLSSLFD  335 (468)
T ss_pred             HHHHHHHHHHHHHhCc
Confidence            9999998888876443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.70  E-value=7e-14  Score=117.98  Aligned_cols=274  Identities=13%  Similarity=0.057  Sum_probs=179.3

Q ss_pred             HHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHH
Q 018388           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (357)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~   93 (357)
                      .....+...+..+..|..-...+        +++.+..+++.+........++..++.|.++||+|||+.-+..+++.++
T Consensus        40 l~vY~La~~aDWLQGpY~Y~LY~--------~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~  111 (354)
T PF05631_consen   40 LLVYLLAMAADWLQGPYLYALYE--------SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSL  111 (354)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            33445556667777776655443        3456667789999999999999999999999999999999999999988


Q ss_pred             HHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHH-hhCC----CccchhHHHHHHH-HHHHHHHHhhHhhhHHh
Q 018388           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV-ADNI----SERQRASAFGILL-GVLSASFVCGTLAARFL  167 (357)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i-~~~~----~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l  167 (357)
                      +++ .-..++   ++.++++|++.|+ +......+-.++. .|.-    |+|..+...+... ..+++-.+.+.+++..+
T Consensus       112 scl-~k~~~~---~~~L~~GRvlgGi-aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l  186 (354)
T PF05631_consen  112 SCL-TKHSSN---YPVLLLGRVLGGI-ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL  186 (354)
T ss_pred             HHH-HHhccc---cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            885 445577   8999999999999 7777777777765 4432    3333334444333 22333334444444443


Q ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHh
Q 018388          168 ------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL  241 (357)
Q Consensus       168 ------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (357)
                            |...+|.....+..+..+++...-+|...+..++                           .+.....++..+.
T Consensus       187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~---------------------------~~~~~~~~~a~~~  239 (354)
T PF05631_consen  187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSS---------------------------SSLSGSFREAWRA  239 (354)
T ss_pred             HHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccc---------------------------cchHHHHHHHHHH
Confidence                  2367898888877776666655556654432221                           1112245566677


Q ss_pred             hhcccchHHHHHHHHHHHHhhhhh-hHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHH
Q 018388          242 LRSSVTLSQAAVVAFFSGLSEGGM-QASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGL  320 (357)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  320 (357)
                      ++++|+++.+.++..+.-...+.+ ..|.|..-.+  +- ....|++++...+..++++.+..-...++......+...+
T Consensus       240 i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~--~~-~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~  316 (354)
T PF05631_consen  240 ILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPD--DE-ELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVF  316 (354)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHheeeeeceecCC--CC-CCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            888899888888777776666655 4444544321  22 2335999999999999999444334455655555655555


Q ss_pred             HHHHHHHHHH
Q 018388          321 FAACINMFIC  330 (357)
Q Consensus       321 ~~~~i~~~~~  330 (357)
                      .+.++++.+.
T Consensus       317 ~~aa~~l~~p  326 (354)
T PF05631_consen  317 AVAAVSLAIP  326 (354)
T ss_pred             HHHHHHHHHH
Confidence            5555554443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.66  E-value=1.1e-17  Score=152.75  Aligned_cols=283  Identities=16%  Similarity=0.238  Sum_probs=2.7

Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHcc----ch--------------
Q 018388           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR----SI--------------  104 (357)
Q Consensus        43 ~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~----~~--------------  104 (357)
                      +..++++..+.|++.+.+-++..+..++..++.+|..|-|.+-.+.++.+++++++++-+    .+              
T Consensus        30 ErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~  109 (539)
T PF03137_consen   30 ERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI  109 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence            447899999999999999999999999999999998777788889999999988877521    00              


Q ss_pred             -----------------------------hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHH
Q 018388          105 -----------------------------SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA  155 (357)
Q Consensus       105 -----------------------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  155 (357)
                                                   ..++.++++.++.|+ ++...++...+|+-|.+++++-+..+|+..+...+
T Consensus       110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~Gi-G~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l  188 (539)
T PF03137_consen  110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGI-GATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL  188 (539)
T ss_dssp             ------------------------------------------SS-S----------------------------------
T ss_pred             ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhc-cccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence                                         124668899999999 77888899999999999999999999999999999


Q ss_pred             HHHhhHhhhHHh--------------------------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccccc
Q 018388          156 SFVCGTLAARFL--------------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIIT  209 (357)
Q Consensus       156 g~~~g~~~~~~l--------------------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  209 (357)
                      |..+|-++++..                          .|+.-|++.+.+.++..+.. +.+|++.+..++..+..+..+
T Consensus       189 GPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl-~~FPk~lp~~~~~~~~~~~~~  267 (539)
T PF03137_consen  189 GPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL-FFFPKKLPGTSERQEEKESSE  267 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HcCCccCCCcccccchhhhhh
Confidence            998887777652                          24555666766655555543 445655443311100000000


Q ss_pred             ccccccccCC-CCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHH
Q 018388          210 EETEGVNQNE-SNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLM  288 (357)
Q Consensus       210 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  288 (357)
                      ...+..+.++ .+.+..+...+..+++.+..+.+.+||.+....+..........++.+++|.|++.+++.++.+++.+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~  347 (539)
T PF03137_consen  268 RKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLT  347 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            0000000000 000000000111122223334456699999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHhhhhhccc--hhHHHHHHHHHHHHHH
Q 018388          289 LIAGLAGTISQLLFMPLLAPILG--EAKLLSLGLFAACINM  327 (357)
Q Consensus       289 ~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~i~~  327 (357)
                      ....+.....+.+++|++.+|++  .|..+....+...++.
T Consensus       348 G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~  388 (539)
T PF03137_consen  348 GIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSV  388 (539)
T ss_dssp             -----------------------------------------
T ss_pred             hhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence            88777666666699999999875  3555555555554443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.65  E-value=1.3e-15  Score=115.52  Aligned_cols=132  Identities=22%  Similarity=0.317  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCC
Q 018388           58 AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI  137 (357)
Q Consensus        58 ~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~  137 (357)
                      +.+.++..++.++.|++.||+|||+.+..+.....++.+.....++   .+.+.+.+++.|+ +.+...+...+++.|..
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~   80 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN---ITVLIIARFLQGF-GAAFALVAGAALIADIY   80 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHhHHHHHHHHC
Confidence            3456778899999999999999999999999998888888888888   8888899999999 66777788999999999


Q ss_pred             CccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccC
Q 018388          138 SERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKD  193 (357)
Q Consensus       138 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e  193 (357)
                      |+++|++.++..+....+|..++|.+++.+    +|++.+++.+....+..+...+..||
T Consensus        81 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        81 PPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999988875    78899998887777766666665555

>TIGR00889 2A0110 nucleoside transporter

Probab=99.65  E-value=1.7e-14  Score=129.73  Aligned_cols=185  Identities=12%  Similarity=0.085  Sum_probs=139.4

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCcc-chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      +.+.+..++............|.+.++.- .+.+. .+.+....|...++..++..++.++.|+++||+|||+++..+.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~  289 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITNIFGNGFLHEFG-RNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLV  289 (418)
T ss_pred             eeHHHHHHHHHhHHHHHHHhHHHHHHHhc-ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            34445555554544455566677765521 01111 12344567999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcc-chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHH-HHHHHHHHhhHhhhHHh
Q 018388           90 LSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARFL  167 (357)
Q Consensus        90 ~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l  167 (357)
                      +..++..+..... +....+.+++.+++.|+ +.+...+....++.|.+|+++|++++++.+ ...++|..+||.++|.+
T Consensus       290 ~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~-~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l  368 (418)
T TIGR00889       290 AWALRFGFFAYGDPEYFGYALLFLSMIVYGC-AFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVM  368 (418)
T ss_pred             HHHHHHHHHHHcCcchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9888877766643 21124566778999998 666777888899999999999999999997 67889999999999874


Q ss_pred             ----------hhHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018388          168 ----------STTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (357)
Q Consensus       168 ----------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~  197 (357)
                                +|+..|.+.+++.++..++.++++||+.+.
T Consensus       369 ~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       369 VEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             HHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence                      388899988888888888888888877543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.64  E-value=2.3e-14  Score=131.56  Aligned_cols=278  Identities=14%  Similarity=0.201  Sum_probs=203.5

Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHcc------------------ch
Q 018388           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR------------------SI  104 (357)
Q Consensus        43 ~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~------------------~~  104 (357)
                      +..++++..+.|++.+.+-++..+...+..+...|..|-+.+-.+.++.+++++++++-+                  +.
T Consensus       124 ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~  203 (735)
T KOG3626|consen  124 ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP  203 (735)
T ss_pred             hhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence            345677777789999999999999999999999999999999999999999999887631                  00


Q ss_pred             -------------------------------hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHH
Q 018388          105 -------------------------------SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVL  153 (357)
Q Consensus       105 -------------------------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  153 (357)
                                                     ..+..++++.++.|+ +....++...+|+-|.+.+++-+..+|+.....
T Consensus       204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GI-G~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~  282 (735)
T KOG3626|consen  204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGI-GATPIFTLGISYIDDNVKKKNSPLYLGILYSMA  282 (735)
T ss_pred             ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhc-CCCCCccCCCccccccccccCCcHHHHHHHHHH
Confidence                                           023467889999999 778888999999999999999999999999999


Q ss_pred             HHHHHhhHhhhHHh-----------------------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccc
Q 018388          154 SASFVCGTLAARFL-----------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITE  210 (357)
Q Consensus       154 ~~g~~~g~~~~~~l-----------------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  210 (357)
                      .+|.++|-+++++.                       .|+.-|++.+.+.++..+.. +++|+..++.+++.+.. ..  
T Consensus       283 ~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~-f~fPk~lp~~~~~~~~~-~~--  358 (735)
T KOG3626|consen  283 ILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL-FFFPKELPKSQKRKRAR-DL--  358 (735)
T ss_pred             HhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HhCcccCccccccchhh-hh--
Confidence            99999998888763                       35666778887777666664 45666554433210000 00  


Q ss_pred             cccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHH
Q 018388          211 ETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI  290 (357)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  290 (357)
                        +..+.+.+..+.+....+..+++.+..+.+.+||.+....+...+......++.+++|-|++.++|.++..+..+...
T Consensus       359 --~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~  436 (735)
T KOG3626|consen  359 --HVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGS  436 (735)
T ss_pred             --cccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhh
Confidence              000000000011111111112333334446679999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHhhhhhccc--hhHHHHHHHHHHHHHH
Q 018388          291 AGLAGTISQLLFMPLLAPILG--EAKLLSLGLFAACINM  327 (357)
Q Consensus       291 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~i~~  327 (357)
                      .++.....+.+++|++.+|+.  .|......++...+..
T Consensus       437 i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l  475 (735)
T KOG3626|consen  437 IGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSL  475 (735)
T ss_pred             hhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHH
Confidence            888888777799999999875  3555555444444443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.64  E-value=3.5e-14  Score=130.61  Aligned_cols=167  Identities=14%  Similarity=0.105  Sum_probs=113.1

Q ss_pred             HHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHH-H
Q 018388           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI-L   98 (357)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~-~   98 (357)
                      ...........+|.++++.       .+.+....++..+...++..++.+..|+++||+|||+.+..+.+...+.... .
T Consensus       262 ~~~~~~~~~~~~p~~l~~~-------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~  334 (490)
T PRK10642        262 TNVTYYMLLTYMPSYLSHN-------LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAF  334 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            3444555566788887652       2233344566777788899999999999999999999988777644433222 2


Q ss_pred             --HHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-----hhHH
Q 018388           99 --AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTS  171 (357)
Q Consensus        99 --~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-----~~~~  171 (357)
                        ..+++   ...+++++++.|+ ..+........++.|.+|++.|+++++.......++..++|.+.+++     +|+.
T Consensus       335 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~  410 (490)
T PRK10642        335 ILINSNV---IGLIFAGLLMLAV-ILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMM  410 (490)
T ss_pred             HHHhCCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence              22344   5666778888887 44445566778888999999999999975444445567778777764     3676


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCC
Q 018388          172 AFQAATIVSMLAAAYMRVFLKDDVPND  198 (357)
Q Consensus       172 ~f~~~~~~~~~~~~~~~~~~~e~~~~~  198 (357)
                      +++...+.+++..+. .+++||++++.
T Consensus       411 ~~~~~~~~~~i~~~~-~~~~pes~~~~  436 (490)
T PRK10642        411 PAYYLMVVAVIGLIT-GVTMKETANRP  436 (490)
T ss_pred             HHHHHHHHHHHHHHH-HHHhccccCCC
Confidence            666665555554444 44579987754

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.61  E-value=9.9e-14  Score=131.01  Aligned_cols=139  Identities=23%  Similarity=0.134  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHH
Q 018388           53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY  132 (357)
Q Consensus        53 ~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~  132 (357)
                      ..+...+..++.+++.++.|+++||+|||++++.+.++.+++.++.++.++   ...+++.+++.|+ ..+...+...++
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s---~~~ll~~~~l~g~-~~~~~~~~~~a~  672 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS---ESAMIALLCLFGG-LSIAAWNALDVL  672 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            455567778899999999999999999999999999999999998888887   6667777888887 445566889999


Q ss_pred             HhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh---hhHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 018388          133 VADNISERQRASAFGILLGVLSASFVCGTLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (357)
Q Consensus       133 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~  196 (357)
                      ++|++|.++|++++|+......+|.++||.+++.+   +...+|++.+++.++..++ ..++||+..
T Consensus       673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll-~~~LPET~~  738 (742)
T TIGR01299       673 TVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLL-ALKLPDTRG  738 (742)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHhCCCCcc
Confidence            99999999999999999999999999999998865   3356777777765555444 345687653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.61  E-value=7.3e-13  Score=114.06  Aligned_cols=279  Identities=13%  Similarity=0.001  Sum_probs=184.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccch---hHHH--HHHHHHHHhhhcccc
Q 018388           49 AIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI---SFFY--AYYALRTLTAMVCEG  123 (357)
Q Consensus        49 s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~r~l~G~~~~~  123 (357)
                      +....-|...+|.+.+....+++-|+.|++|-|...+++..+..++..+-..+..+   +.++  ....+..+.+. +..
T Consensus        77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~-Aq~  155 (480)
T KOG2563|consen   77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAA-AQP  155 (480)
T ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHH-hhh
Confidence            34455788889999999999999999999999999999999999999988777543   3344  66778888887 656


Q ss_pred             hHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----------hhHH--HHHHHHHHHHHHHHHHHHhc
Q 018388          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----------STTS--AFQAATIVSMLAAAYMRVFL  191 (357)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----------~~~~--~f~~~~~~~~~~~~~~~~~~  191 (357)
                      ++...-.....-|++++||..+...-.+++.+|..+|-++...+          .|..  .|+....+..+.+++..+..
T Consensus       156 Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~  235 (480)
T KOG2563|consen  156 FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVF  235 (480)
T ss_pred             HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66544456677889999999999888888777777765554432          3432  45545555444444444555


Q ss_pred             cCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHH
Q 018388          192 KDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLY  271 (357)
Q Consensus       192 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (357)
                      ++.|+.++..                       .... .+..+..+..+..++++++....+++......+.+..+.+..
T Consensus       236 ~~~P~tPps~-----------------------s~~~-~~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~  291 (480)
T KOG2563|consen  236 TKKPPTPPSA-----------------------SQAA-LQDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNL  291 (480)
T ss_pred             CCCCCCCCch-----------------------hHhh-hhcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhh
Confidence            5544333221                       0000 001123333444556888888777777766666666666655


Q ss_pred             hhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccch-hHHHHHHHHHHHHHH-HHHHhcC---cchHHHH-HHHH
Q 018388          272 FLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE-AKLLSLGLFAACINM-FICSISW---SAWVPYA-TTAF  345 (357)
Q Consensus       272 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~i~~-~~~~~~~---~~~~~~~-~~~~  345 (357)
                      -+... |++...+|+......+.+++++ .+.|.+.||.++ |.++++......++. .+.....   +.+.++. ..++
T Consensus       292 ~l~~s-gY~~~~aG~ig~l~iv~Gmlga-~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~  369 (480)
T KOG2563|consen  292 ALCPS-GYEGVFAGYIGALMIVAGMLGA-LASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLL  369 (480)
T ss_pred             ccccc-cCCccccchhHHHHHHHHHHHH-HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHH
Confidence            55554 7777888999999999999998 888999999876 555555555555552 2222221   2223333 4555


Q ss_pred             HHhhhcccc
Q 018388          346 SVLVVFATP  354 (357)
Q Consensus       346 ~~~~~~~~p  354 (357)
                      |.......|
T Consensus       370 g~~~~~~~P  378 (480)
T KOG2563|consen  370 GFFGTGYLP  378 (480)
T ss_pred             HHhhcCCCC
Confidence            655555454

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.58  E-value=2e-13  Score=122.95  Aligned_cols=170  Identities=19%  Similarity=0.253  Sum_probs=132.5

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHH
Q 018388           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (357)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~   96 (357)
                      .+..........+.+|.+..+..+    +.+......|.+.++..++..++.+..|+++||+|||+.+..+.....++.+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  303 (408)
T PRK09874        228 TLIIQVATGSIAPILTLYVRELAG----NVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLI  303 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence            334444555566777877776321    1111123457777788888899999999999999999999998888877777


Q ss_pred             HHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHH
Q 018388           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSA  172 (357)
Q Consensus        97 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~  172 (357)
                      .....++   .+.+.+.+++.|+ +.+...+...+.+.+..|+++|++.++..+....+|..+||.++|.+    +|++.
T Consensus       304 ~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~  379 (408)
T PRK09874        304 PMSFVQT---PLQLGILRFLLGA-ADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAV  379 (408)
T ss_pred             HHHHhcc---HHHHHHHHHHHHh-hhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHH
Confidence            7777777   6777888999998 66777788888999999999999999999999999999999999876    78999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCC
Q 018388          173 FQAATIVSMLAAAYMRVFLKDD  194 (357)
Q Consensus       173 f~~~~~~~~~~~~~~~~~~~e~  194 (357)
                      |++.+++.++..+..++..+++
T Consensus       380 f~~~~~~~l~~~~~~~~~~~~~  401 (408)
T PRK09874        380 FLVTAGVVLFNAVYSWNSLRRR  401 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999888777766665544433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.58  E-value=5.3e-14  Score=127.09  Aligned_cols=164  Identities=12%  Similarity=0.036  Sum_probs=126.9

Q ss_pred             HhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccch
Q 018388           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (357)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~  104 (357)
                      .......|.+..+...    +.+.+..+.|++.++..+...++.++.|+++||+|||+.+..+.++..++..+.+++++ 
T Consensus       240 ~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~-  314 (420)
T PRK09528        240 DVFDQQFPNFFASFFA----TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG-  314 (420)
T ss_pred             HHHHHHHHHHHHHHHh----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc-
Confidence            3333346666655321    11334456799999999999999999999999999999999999988888888888888 


Q ss_pred             hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHH-HHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHH
Q 018388          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARFL----STTSAFQAATIV  179 (357)
Q Consensus       105 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~  179 (357)
                        .+.+++.+++.|+ ..+...+....++.|..|++.|+...+. .+....+|..+||.+.|++    ||+..|...+++
T Consensus       315 --~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~  391 (420)
T PRK09528        315 --PLEVSILKLLHAF-EVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGI  391 (420)
T ss_pred             --HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence              7777888999998 6566656777899999999988887655 5677889999999888875    889999988888


Q ss_pred             HHHHHHHHHHhccCCCC
Q 018388          180 SMLAAAYMRVFLKDDVP  196 (357)
Q Consensus       180 ~~~~~~~~~~~~~e~~~  196 (357)
                      .++..++.++..+++++
T Consensus       392 ~~i~~~~~~~~~~~~~~  408 (420)
T PRK09528        392 VLLFTLISVFTLSGDRE  408 (420)
T ss_pred             HHHHHHHHHHHhcCCch
Confidence            77666665665555443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.54  E-value=1.1e-12  Score=117.52  Aligned_cols=163  Identities=14%  Similarity=0.149  Sum_probs=117.9

Q ss_pred             HHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHH
Q 018388           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (357)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~   97 (357)
                      +.............|.+.++.       .+.+..+.|++.+...+...++.++.|+++||+|||+.+..+.....+....
T Consensus       226 ~~~~~~~~~~~~~~p~~l~~~-------~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~  298 (393)
T PRK15011        226 TLMWGTNSLYIINMPLFIINE-------LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAG  298 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            333334444555678777652       3444556677777777778888999999999999999888776665555544


Q ss_pred             HHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHH
Q 018388           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAF  173 (357)
Q Consensus        98 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f  173 (357)
                      ....++   .+.+++.+++.++ ..+...+....+..|..| ++|+++++.++....+|..+||.++|.+    +|+..|
T Consensus       299 ~~~~~~---~~~~l~~~~l~~~-~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~  373 (393)
T PRK15011        299 MLMAHS---PAILLGLQLLNAI-YIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVF  373 (393)
T ss_pred             HHHHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            445566   6666778888777 555555667777889887 4689999999888999999999888875    788888


Q ss_pred             HHHHHHHHHHHHHHHHhccC
Q 018388          174 QAATIVSMLAAAYMRVFLKD  193 (357)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~e  193 (357)
                      ++.+++.++..+.. +..||
T Consensus       374 ~~~~~~~~~~~~~~-~~~~~  392 (393)
T PRK15011        374 WFALVMIIATLFCL-LRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHH-HhhcC
Confidence            88777766554443 44554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.53  E-value=1.3e-12  Score=117.25  Aligned_cols=159  Identities=17%  Similarity=0.124  Sum_probs=121.7

Q ss_pred             HHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHH
Q 018388           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA   99 (357)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~   99 (357)
                      ..++.......+|.+..+.        +.+  ..++..+.+.++..++.++.|++.||+|||+.+..+..+..++..+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  297 (399)
T PRK05122        228 ASIGFGTIATFITLYYAAR--------GWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW  297 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHc--------ccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            3444445555666666541        111  225556677888889999999999999999999988888888887877


Q ss_pred             HccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHH
Q 018388          100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQA  175 (357)
Q Consensus       100 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~  175 (357)
                      ..++   .+.+++.+++.|+ +.+...+.......|..|+|+|+++.++++....+|..++|.+.|.+    +|++.|++
T Consensus       298 ~~~~---~~~~~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  373 (399)
T PRK05122        298 LAPS---PWMALIGAALTGF-GFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLA  373 (399)
T ss_pred             Hhcc---HHHHHHHHHHHHH-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            7777   6667788899998 66666677778888999999999999999999999998888777765    78999998


Q ss_pred             HHHHHHHHHHHHHHhccC
Q 018388          176 ATIVSMLAAAYMRVFLKD  193 (357)
Q Consensus       176 ~~~~~~~~~~~~~~~~~e  193 (357)
                      .+.+.++..+..++ +++
T Consensus       374 ~~~~~~~~~~~~~~-~~~  390 (399)
T PRK05122        374 AALAALLGLALTWL-LYR  390 (399)
T ss_pred             HHHHHHHHHHHHHH-hcc
Confidence            88776666555444 444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.52  E-value=7.1e-13  Score=116.54  Aligned_cols=168  Identities=23%  Similarity=0.240  Sum_probs=141.6

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcch-hhhHH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA-MLTLP   87 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~-~l~~~   87 (357)
                      .++...+..+.............|.+.++.       .+.+..+.++..+...++..++.++.|++.||+|||+ .+..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  248 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEV-------LGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG  248 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            344555556666667777777888887652       2445567799999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      ..+..++.......++   .+...+..++.|+ +.+...+...+++.|..|+|+|++.++..+....+|..++|.+.+.+
T Consensus       249 ~~~~~i~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l  324 (352)
T cd06174         249 LLLAALGLLLLALAPS---LALLLVALLLLGF-GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL  324 (352)
T ss_pred             HHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888   7788899999999 66777789999999999999999999999999999999999998875


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHH
Q 018388          168 ----STTSAFQAATIVSMLAAAYM  187 (357)
Q Consensus       168 ----~~~~~f~~~~~~~~~~~~~~  187 (357)
                          +|+..+++.+++.++..+..
T Consensus       325 ~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         325 LDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             hcccCcchHHHHHHHHHHHHHHHh
Confidence                78899998888876665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.51  E-value=1.3e-12  Score=117.64  Aligned_cols=160  Identities=19%  Similarity=0.147  Sum_probs=119.2

Q ss_pred             HHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHH
Q 018388           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (357)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~   97 (357)
                      +............+|.+.++        .+.+....|...+...++..++.++.|+++||+|||+.+..+.+...++..+
T Consensus       230 ~~~~~~~~~~~~~~p~~~~~--------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  301 (406)
T PRK11551        230 FFTLIVLYFLLNWLPSLLVG--------QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAA  301 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--------CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            33333334444456777653        2344456688888999999999999999999999999988877777777666


Q ss_pred             HHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-----hhHHH
Q 018388           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSA  172 (357)
Q Consensus        98 ~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-----~~~~~  172 (357)
                      ....++   .+.+.+..++.|+ ..+...+...++..|.+|+++|++.+++.+....+|..+||.++|.+     +|...
T Consensus       302 ~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~  377 (406)
T PRK11551        302 LAAAPS---FAGMLLAGFAAGL-FVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGV  377 (406)
T ss_pred             HHhcCc---HHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHH
Confidence            666776   6666677777887 44455678889999999999999999999999999999999999886     34555


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 018388          173 FQAATIVSMLAAAYMRV  189 (357)
Q Consensus       173 f~~~~~~~~~~~~~~~~  189 (357)
                      ++......++..++.++
T Consensus       378 ~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        378 IGASIPVILVAALAALL  394 (406)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66555554444444443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.51  E-value=1.7e-12  Score=117.23  Aligned_cols=161  Identities=10%  Similarity=0.025  Sum_probs=125.7

Q ss_pred             hHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhH
Q 018388           27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISF  106 (357)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~  106 (357)
                      ....+|.+.++       ..+.+....|++.+...++..++.++.+++.||.++++.+..+.++..++.++..+.++   
T Consensus       242 ~~~~~p~~~~~-------~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---  311 (417)
T PRK10489        242 VRVLYPALADE-------VWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPM---  311 (417)
T ss_pred             HHHhhHHHHHh-------ccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccch---
Confidence            34566777764       23445566799999999999999999999999988888888888888888777777777   


Q ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHHHHH
Q 018388          107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSML  182 (357)
Q Consensus       107 ~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~~~~  182 (357)
                      .+...++.++.|+ +.+...+...+++.|..|+|+|++++++......+|..+||.+.|.+    +.+..++..+....+
T Consensus       312 ~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~  390 (417)
T PRK10489        312 WILAVLCLALFGY-LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLI  390 (417)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence            6666778888888 55666667788999999999999999999999999999999998876    556677777666566


Q ss_pred             HHHHHHHhccCCCCCC
Q 018388          183 AAAYMRVFLKDDVPND  198 (357)
Q Consensus       183 ~~~~~~~~~~e~~~~~  198 (357)
                      ..+.....+||.++.+
T Consensus       391 ~~~~~~~~~~~~~~~~  406 (417)
T PRK10489        391 IGVLLLLVLGELRRFR  406 (417)
T ss_pred             HHHHHHHhcccccccc
Confidence            5555566667655433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.51  E-value=2.7e-13  Score=123.51  Aligned_cols=165  Identities=14%  Similarity=0.135  Sum_probs=123.8

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc--CcchhhhH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAMLTL   86 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~--Grk~~l~~   86 (357)
                      .++......++..++.......+|.|.++        .+.+....|++.++..++..++.++.|+++||.  ++|+...+
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  313 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKD--------KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLF  313 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHH
Confidence            34555555566666655556677777653        244556778899999999999999999999984  34433333


Q ss_pred             --HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh
Q 018388           87 --PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (357)
Q Consensus        87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  164 (357)
                        +.+..+++.++....++   ++.+++.+++.|+ +.+...+...+++.|.+|++++++.+++++....+|..+||.++
T Consensus       314 ~~~~~~~~l~~ll~~~~~~---~~~~~i~~~~~G~-~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~  389 (455)
T TIGR00892       314 SFALLFNGLTHLLCALAGD---YTGLVIYCIFFGL-SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA  389 (455)
T ss_pred             HHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHH-HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccce
Confidence              33434444555566777   7778889999999 66777788899999999999999999999999999999999999


Q ss_pred             HHh-----hhHHHHHHHHHHHHHHHH
Q 018388          165 RFL-----STTSAFQAATIVSMLAAA  185 (357)
Q Consensus       165 ~~l-----~~~~~f~~~~~~~~~~~~  185 (357)
                      |.+     +|++.|++.+++.++..+
T Consensus       390 G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       390 GRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             eeeehhcCCcchHHHHhhHHHHHHHH
Confidence            875     488888888776555443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.49  E-value=2.5e-11  Score=106.44  Aligned_cols=173  Identities=13%  Similarity=0.087  Sum_probs=140.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-Ccchhhh
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLT   85 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-Grk~~l~   85 (357)
                      .|.++.+....+-..++++-+-..+-.|+.....++   ++.+...+.-+.+.|..-.-+...++|+++||+ |+|+.+.
T Consensus        20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g---Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG---LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc---CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            567888899999999999888888888888755432   556666666666777766678889999999995 9999999


Q ss_pred             HHHHHHHHHHHHHHHcc--chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccc--hhHHHHHHHHHHHHHHHhhH
Q 018388           86 LPLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ--RASAFGILLGVLSASFVCGT  161 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~  161 (357)
                      .+.++..+|.++.+.+.  +   ...++++-.+.++ +.|.+-+...+++.|.+|++|  |-..++++.++.++|..++|
T Consensus        97 lGail~~iGh~~L~~~~~~~---~~gl~i~L~~I~i-G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p  172 (498)
T COG3104          97 LGAILMAIGHLVLAISSVSG---PGGLYIGLALIIV-GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAP  172 (498)
T ss_pred             HHHHHHHHHHHHHhcccccc---ccHHHHHHHHHHh-ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHH
Confidence            99999999999999884  5   5667788888888 788898999999999998654  66778888888999999999


Q ss_pred             hhhHHh----hhHHHHHHHHHHHHHHHHH
Q 018388          162 LAARFL----STTSAFQAATIVSMLAAAY  186 (357)
Q Consensus       162 ~~~~~l----~~~~~f~~~~~~~~~~~~~  186 (357)
                      .+.+++    +|+..|...++-..+.++.
T Consensus       173 ~i~~~~~~~~g~~~gF~~aavGm~~gl~~  201 (498)
T COG3104         173 IITGLLAINYGWHVGFGLAAVGMIIGLVI  201 (498)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence            888876    7888888887665554444

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.49  E-value=9e-13  Score=117.14  Aligned_cols=164  Identities=16%  Similarity=0.208  Sum_probs=121.7

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      ++......+...+.........+.+.++        .+.+..+.+...+...++..++.++.|+++||+|||+.+..+.+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  278 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYGQS--------LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFG  278 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            3344444444444444444455555443        23444567888899999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh--
Q 018388           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (357)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--  167 (357)
                      ...++.....+.++.. ...++...++.|+ ..+...+...+++.|.+|+|+|+++.++.+....+|..++|.+.+.+  
T Consensus       279 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       279 ISAVGMAAMLFIPMLN-DVLFLATVALVFF-TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             HHHHHHHHHHHcccch-hHHHHHHHHHHHH-HhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888887777766421 2234455677777 44555567788899999999999999999999999999999988875  


Q ss_pred             --hhHHHHHHHHHHHHHH
Q 018388          168 --STTSAFQAATIVSMLA  183 (357)
Q Consensus       168 --~~~~~f~~~~~~~~~~  183 (357)
                        ||++.|.+.+++.++.
T Consensus       357 ~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       357 EIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hhchhhHHHHHHHHHHHh
Confidence              7898888887765543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.49  E-value=2.2e-12  Score=119.28  Aligned_cols=144  Identities=14%  Similarity=0.118  Sum_probs=105.2

Q ss_pred             hHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhH
Q 018388           27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISF  106 (357)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~  106 (357)
                      ....+|.+.++       +.+.+..+.|++.+...++..++.++.|+++||+|||+++..+..+..+..+......+.. 
T Consensus       294 ~~~~lp~~l~~-------~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~-  365 (496)
T PRK03893        294 IQALLPTYLKT-------DLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGAN-  365 (496)
T ss_pred             HHHHHHHHHHh-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccH-
Confidence            34567888754       3355566789999999999999999999999999999998888776666555444333211 


Q ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHH
Q 018388          107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIV  179 (357)
Q Consensus       107 ~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~  179 (357)
                      .+...+..++.+..+.+. .+...+++.|.+|+++|++.+++......+|..+||.++|.+    +|+..+...+..
T Consensus       366 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        366 VWVLGLLLFFQQMLGQGI-SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             HHHHHHHHHHHHHHhccc-chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            333444445444423233 356777889999999999999999999999999999998876    677666554433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.48  E-value=3.6e-12  Score=113.62  Aligned_cols=164  Identities=14%  Similarity=0.090  Sum_probs=135.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.++...+..++...+........|.+.+|        .+.+..+.|++.+...++..+..+..+++.||+|+|+.+.+
T Consensus       204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~--------~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~  275 (382)
T TIGR00902       204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA--------AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLI  275 (382)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHH
Confidence            3445666666777777777777788888864        34555677888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHH-HHHHHHHHhhHhhhH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAAR  165 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~  165 (357)
                      +.+...+.....+++++   .+.+++.+++.|+ ..+...+....++.+. |+++|++..++++ ...++|..+||.++|
T Consensus       276 ~~~~~~~~~~~~~~~~~---~~~~~~~q~l~g~-~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G  350 (382)
T TIGR00902       276 SAIACVGRWAIIGAIEA---FPLIFLLQILHCG-TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAG  350 (382)
T ss_pred             HHHHHHHHHHHHHhHhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888   8888999999999 7788889999999998 9999999999986 577899999999999


Q ss_pred             Hh----hhHHHHHHHHHHHHHHH
Q 018388          166 FL----STTSAFQAATIVSMLAA  184 (357)
Q Consensus       166 ~l----~~~~~f~~~~~~~~~~~  184 (357)
                      ++    ++ ..|+..+.+.++..
T Consensus       351 ~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       351 FIYPTLGA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHhccH-HHHHHHHHHHHHHH
Confidence            87    43 45666666655443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK12382 putative transporter; Provisional

Probab=99.48  E-value=4.5e-12  Score=113.48  Aligned_cols=159  Identities=18%  Similarity=0.182  Sum_probs=124.0

Q ss_pred             HHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHH
Q 018388           19 LWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL   98 (357)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~   98 (357)
                      +...+........|.+.++.        +.+  ..++..+.+.++..++.++.|++.||+|||+.+..+..+..++..+.
T Consensus       227 l~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~  296 (392)
T PRK12382        227 LQGVGFAVIGTFVSLYFASK--------GWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLL  296 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHhc--------CCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHH
Confidence            33344445556666666542        111  12555666788888999999999999999999999998888888888


Q ss_pred             HHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHH
Q 018388           99 AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQ  174 (357)
Q Consensus        99 ~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~  174 (357)
                      .+.++   .+...+..++.|+ +.+...+...+.+.|..|+|+|+++.++.+....+|..+||.+++.+    ||++.|.
T Consensus       297 ~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~  372 (392)
T PRK12382        297 WLAPT---AWVALAGAALTGA-GCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFL  372 (392)
T ss_pred             HHccc---HHHHHHHHHHHHH-HHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            77777   6677788899998 66666677888889999999999999999999999999999888875    7899999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 018388          175 AATIVSMLAAAYMRVFL  191 (357)
Q Consensus       175 ~~~~~~~~~~~~~~~~~  191 (357)
                      +.+.+.++..+..++..
T Consensus       373 ~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        373 AGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            98887776666555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.47  E-value=4e-12  Score=113.11  Aligned_cols=170  Identities=16%  Similarity=0.226  Sum_probs=121.9

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      +..+....++...........+|.+.++.       .+.+..+.|++.+.......++.++.|++.||+|||+.+..+.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~  273 (375)
T TIGR00899       201 TRLLFVACTLMWGCNILYIINMPLLIIHE-------LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAAL  273 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHH
Confidence            33333444444443444455567776552       23444566777777777777888999999999999999888777


Q ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh--
Q 018388           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (357)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--  167 (357)
                      ...+........++   .+.+.+.+++.|+ +.+...+....++.|..|+ +|+++++..+....+|..+||.+++.+  
T Consensus       274 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~  348 (375)
T TIGR00899       274 AGVAFYTGLAADNS---LWALLMLQLLNAI-FIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE  348 (375)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666555555566   6667778888888 5566667888888998875 567999999999999999999988875  


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhcc
Q 018388          168 --STTSAFQAATIVSMLAAAYMRVFLK  192 (357)
Q Consensus       168 --~~~~~f~~~~~~~~~~~~~~~~~~~  192 (357)
                        +|+..|++.+++.++..+.. ..++
T Consensus       349 ~~g~~~~~~~~~~~~~~~~~~~-~~~~  374 (375)
T TIGR00899       349 RWSYHAVYWFAIVMLIVALFCL-LLIK  374 (375)
T ss_pred             hccchhHHHHHHHHHHHHHHHH-heec
Confidence              78889988887766555443 3344

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.47  E-value=6.4e-12  Score=112.44  Aligned_cols=167  Identities=12%  Similarity=0.137  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHH
Q 018388           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (357)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~   92 (357)
                      .....++...........++.+.++.       .+.+....|++.+...++..++.++.|+++||+|||+... +..+..
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~l~~~-------~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~  281 (390)
T PRK03545        210 LYLLTVVVVTAHFTAYSYIEPFVQQV-------AGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLL  281 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHH
Confidence            33333333333333344556666542       2334456688888889999999999999999999887544 433333


Q ss_pred             HHH-HHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----
Q 018388           93 IPL-AILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (357)
Q Consensus        93 ~~~-~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----  167 (357)
                      ++. ......++   .+.+.+..++.|+ +.+...+...+.+.|..| ++|+++++..+....+|..+||.++|.+    
T Consensus       282 ~~~~~l~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~  356 (390)
T PRK03545        282 VCLLLLLPAANS---EWHLSVLSIFWGI-AIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL  356 (390)
T ss_pred             HHHHHHHHHhch---HHHHHHHHHHHHH-HHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            333 33344555   6667778888888 444444567777888766 6889999999999999999999998875    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcc
Q 018388          168 STTSAFQAATIVSMLAAAYMRVFLK  192 (357)
Q Consensus       168 ~~~~~f~~~~~~~~~~~~~~~~~~~  192 (357)
                      +++..|+..+.+.++..+..+...+
T Consensus       357 g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        357 GLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            7899999998887776666655543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.47  E-value=8.5e-10  Score=96.08  Aligned_cols=276  Identities=13%  Similarity=0.051  Sum_probs=174.8

Q ss_pred             HHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCc
Q 018388           60 IGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE  139 (357)
Q Consensus        60 ~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~  139 (357)
                      ..-.++...++...+.|..+.|++++++.+...+...+..+.++   ...+-+..+..|+ ..+.. .+..+++-...|+
T Consensus        50 ~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s---v~~mq~~q~~yg~-~~a~e-vay~sYiys~v~~  124 (412)
T PF01770_consen   50 WTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS---VLAMQLMQFFYGL-ATAAE-VAYYSYIYSVVDK  124 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc---HHHHHHHHHHHHH-HHHHH-HHHHHHheeecCH
Confidence            34556777889999999999999999999999999999999999   8999999999999 54554 6888999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHhhHhhhHHh------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCC---CCCCCcccccc
Q 018388          140 RQRASAFGILLGVLSASFVCGTLAARFL------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD---DDDLTRPIITE  210 (357)
Q Consensus       140 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~~~~~~~  210 (357)
                      ++-.++.+...++.-+|..++.++|..+      +.+...++......++ .+..+++|.+++..-   +..+..+..+.
T Consensus       125 ~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a-~~~~~fLP~~~~S~~f~r~~~~~~~~~~~  203 (412)
T PF01770_consen  125 EHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLA-LLIALFLPMPKRSLFFHRKPPAEQDANES  203 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHHHcCCCCcccceeccCccccccccc
Confidence            9999999999999999999988888775      3455555554443333 333456777654311   11110010000


Q ss_pred             cccccccCCCC-----CCCCccccccchhHHHHHHh---hhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhh--cccC
Q 018388          211 ETEGVNQNESN-----SPVKIPVCKKIPSIRDLICL---LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FHFN  280 (357)
Q Consensus       211 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~  280 (357)
                      ..++.++..++     ++...........++..++.   ..++|.++...+-..+...++..+.++.....++.  -+-+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~  283 (412)
T PF01770_consen  204 ESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNE  283 (412)
T ss_pred             cccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCC
Confidence            00000000000     00111111111122222222   33577776666666666666666666666555544  2333


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHH--HHHHHHHHHHHHHHHhcCcchHHHHH
Q 018388          281 KNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL--SLGLFAACINMFICSISWSAWVPYAT  342 (357)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~  342 (357)
                      ....|.+-+...+.+.++. +..|++..++.+..-+  .....+.+..++++...++.|..+..
T Consensus       284 ~vYNG~VeA~~tllgA~~a-l~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~  346 (412)
T PF01770_consen  284 SVYNGAVEAASTLLGAIAA-LLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAG  346 (412)
T ss_pred             cccchHHHHHHHHHHHHHH-HHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            4446888888888888888 8888886666553333  33344445556667778888777764

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.46  E-value=5e-12  Score=115.76  Aligned_cols=169  Identities=15%  Similarity=0.063  Sum_probs=115.2

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      .++...+..++...........+|.|.++       +.+.+..+.++..+...++..++.+..|+++||+|||+.+....
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~-------~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~  331 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQ-------ELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACI  331 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            34455555555555555556678888865       34555667788888899999999999999999999998876654


Q ss_pred             HHHHHHHHHH--HHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHH-HHHhhHhhhH
Q 018388           89 TLSIIPLAIL--AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGTLAAR  165 (357)
Q Consensus        89 ~~~~~~~~~~--~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~  165 (357)
                      ....++....  ...++   .+...+.+++.|+...+.. ........|..|+|+|+++.|+.+....+ |..++|.+.|
T Consensus       332 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G  407 (467)
T PRK09556        332 ALALIIFTLGVYQHATS---EYMYLASLFALGFLVFGPQ-LLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLG  407 (467)
T ss_pred             HHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHhhHH-HHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHH
Confidence            4443332222  22344   5556677788886232332 23346677999999999999999888886 6677776665


Q ss_pred             Hh----------------hhHHHHHHHHHHHHHHHHHHH
Q 018388          166 FL----------------STTSAFQAATIVSMLAAAYMR  188 (357)
Q Consensus       166 ~l----------------~~~~~f~~~~~~~~~~~~~~~  188 (357)
                      ++                +|+..|++..+..++..+...
T Consensus       408 ~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        408 MIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            54                378888887666555544433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.45  E-value=1.2e-13  Score=111.54  Aligned_cols=259  Identities=9%  Similarity=0.007  Sum_probs=166.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-cCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchH
Q 018388           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI  125 (357)
Q Consensus        47 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  125 (357)
                      ++......++.++|+....+...+.|++.|| +|.|..-++-+....++.++++.-.-.+.+|.+..+|++.|+++.+..
T Consensus        75 ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlA  154 (459)
T KOG4686|consen   75 NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLA  154 (459)
T ss_pred             ccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhh
Confidence            4444455778888999999999999999997 677766555555556676666654333339999999999999554444


Q ss_pred             HHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhh----HhhhHHhhh------HH---HHHHHHHH-HHHHHHHHH-Hh
Q 018388          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCG----TLAARFLST------TS---AFQAATIV-SMLAAAYMR-VF  190 (357)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g----~~~~~~l~~------~~---~f~~~~~~-~~~~~~~~~-~~  190 (357)
                       .+...++..++..||.+.++|+......+|..+-    |.+....+-      +.   ........ +....++.. .-
T Consensus       155 -VaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg  233 (459)
T KOG4686|consen  155 -VAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLG  233 (459)
T ss_pred             -hhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             6788999999999999999999999888886554    333222211      00   11111111 111111111 11


Q ss_pred             ccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHH
Q 018388          191 LKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFL  270 (357)
Q Consensus       191 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (357)
                      .-|+..++.-+               .+  +.+.  .+..+..+.++      -.|.+|...+.++++.....-+...-|
T Consensus       234 ~~D~rAerilh---------------~e--~g~~--Ge~pkLtdv~~------f~ppfw~~~iicv~yyva~fPFi~lg~  288 (459)
T KOG4686|consen  234 LSDDRAERILH---------------LE--EGFL--GEEPKLTDVNT------FYPPFWVLVIICVLYYVAWFPFITLGP  288 (459)
T ss_pred             hhhhHHHHHHh---------------hh--cCcc--cCCcccccccc------cCccHHHHHHHHHHHHHHHHHHhhhhH
Confidence            11111111100               00  0000  00011111122      257889999999999999999999999


Q ss_pred             HhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHH-HHHHHHHHHh
Q 018388          271 YFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA-ACINMFICSI  332 (357)
Q Consensus       271 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~i~~~~~~~  332 (357)
                      .+.++++|+|+.+++.+.+..-....+.. .+.|.++||.|++-..+.+..+ ...+-..+.+
T Consensus       289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~s-pvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F  350 (459)
T KOG4686|consen  289 MFFQKRFGLSAVSAGNILSTVYGISAVLS-PVFGAISDKYGFNLWWVASACILTLLGHSGLFF  350 (459)
T ss_pred             HHHHHhhCCChhhccchhhhhhhhhhhhh-hhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh
Confidence            99999999999999999988888888877 6779999999987665555444 3344444433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.45  E-value=1.2e-11  Score=110.25  Aligned_cols=154  Identities=15%  Similarity=0.127  Sum_probs=114.0

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHH
Q 018388           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (357)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~   96 (357)
                      .+............+|.+.++        .+.+....|+..+...++..++.++.|++.||+|+|+.+..+.....++..
T Consensus       209 ~~~~~~~~~~~~~~lp~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~  280 (381)
T PRK03633        209 CIISGIVLGSLYGLMPLYLNH--------QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSI  280 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            333333444445567877764        244445668888889999999999999999999999999888777776654


Q ss_pred             HHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHH
Q 018388           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSA  172 (357)
Q Consensus        97 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~  172 (357)
                      ...  +.    .......++.|+ +.....|...+.+.|..|+++++...+......++|..+||.++|.+    +|++.
T Consensus       281 ~~~--~~----~~~~~~~~l~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~  353 (381)
T PRK03633        281 AML--SQ----AAMAPALFILGA-AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLL  353 (381)
T ss_pred             HHh--hh----HHHHHHHHHHHH-HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence            432  22    223345667777 44556688999999999988888888888888999999999999886    68888


Q ss_pred             HHHHHHHHHHHHH
Q 018388          173 FQAATIVSMLAAA  185 (357)
Q Consensus       173 f~~~~~~~~~~~~  185 (357)
                      |.+.+.+.++..+
T Consensus       354 f~~~~~~~l~~~~  366 (381)
T PRK03633        354 FIMIASVSFIYLL  366 (381)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888777655443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.44  E-value=2.3e-11  Score=111.24  Aligned_cols=166  Identities=19%  Similarity=0.188  Sum_probs=130.7

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      +..+....++..+....+...+|.+.++.       ++.+....|++.+..++|.+++++..+++.+|+++++.+..+.+
T Consensus       220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~-------l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~  292 (524)
T PF05977_consen  220 LRSVLLRSFLFNLFASAVWALLPLFARDV-------LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASL  292 (524)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhhHHHHHH-------hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHH
Confidence            33334444444455455566788888763       34445567999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh--
Q 018388           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (357)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--  167 (357)
                      ..+++.+..+++++   .+...+.-++.|+ +.....+...+.+.+..|++.|||.++++++....+..+|..+.|.+  
T Consensus       293 ~~a~~~~~lal~~~---~~~~~~~l~l~G~-~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  293 LFALALLLLALSPS---FWLALIALFLAGA-AWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             HHHHHHHHHhcchH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998   8888888889998 66666677888999999999999999999999888888888887775  


Q ss_pred             --hhHHHHHHHHHHHHHHHHH
Q 018388          168 --STTSAFQAATIVSMLAAAY  186 (357)
Q Consensus       168 --~~~~~f~~~~~~~~~~~~~  186 (357)
                        |-+..+.+.++..++..++
T Consensus       369 ~~g~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  369 HFGVRTALLIAGAALLLSALI  389 (524)
T ss_pred             HhCHHHHHHHHHHHHHHHHHH
Confidence              5566777666554444333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.44  E-value=1.7e-11  Score=109.62  Aligned_cols=178  Identities=12%  Similarity=0.047  Sum_probs=125.3

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      ..+.+.+..++...+.......+|.+.++        .+.+..+.|...+.+.++..++.+..|++.||+|||+.+..+.
T Consensus       206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--------~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~  277 (393)
T PRK09705        206 RAWTLGVYFGLINGGYASLIAWLPAFYIE--------IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLAL  277 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence            34444455555555666666677888764        2445566788999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCC-ccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      .+..++..+....++.  .....  -++.|+ +.+...+.......+..+ +|+|++..+..+....++..+||.+.|++
T Consensus       278 ~l~~~~~~~~~~~~~~--~~~~~--~~l~g~-g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l  352 (393)
T PRK09705        278 VLQLVGFCGFIWLPLQ--LPVLW--AMVCGL-GLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL  352 (393)
T ss_pred             HHHHHHHHHHHHccch--HHHHH--HHHHHH-hccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777776655443321  11111  234566 444555666666667764 67899999999999999999999998886


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 018388          168 -----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (357)
Q Consensus       168 -----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~  199 (357)
                           +|...|.+.+...++.........||+++++.
T Consensus       353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        353 RSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence                 35667777776666666665666777655443

>PRK03699 putative transporter; Provisional

Probab=99.42  E-value=9.3e-12  Score=111.48  Aligned_cols=167  Identities=8%  Similarity=0.051  Sum_probs=125.2

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      +.++...+..++...........+|.+.++       +.+.+..+.|.+.+.+.++..++.+..|+++||++||+.+...
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-------~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~  277 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQK-------KFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVL  277 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Confidence            344555555666666666666778888865       3345566778888999999999999999999999999998887


Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      ..+..+...+....++   .+.+.+..++.|+ ..+...+...++..|..| +++++..+.......+|..++|.+.|++
T Consensus       278 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l  352 (394)
T PRK03699        278 AGLALVLMYLFVNTDD---PSHLLYAILGLGF-FSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPI  352 (394)
T ss_pred             HHHHHHHHHHHHHcCC---chHHHHHHHHHHH-HHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            7777776666666666   5555566777887 555566777777777765 4567788888888899999999998875


Q ss_pred             ----hhHHHHHHHHHHHHHHHHH
Q 018388          168 ----STTSAFQAATIVSMLAAAY  186 (357)
Q Consensus       168 ----~~~~~f~~~~~~~~~~~~~  186 (357)
                          |++..++..+++..+..+.
T Consensus       353 ~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        353 VAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHHhCchhhhhhhHHHHHHHHHH
Confidence                7788888777775555443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.41  E-value=2.2e-11  Score=108.87  Aligned_cols=172  Identities=17%  Similarity=0.191  Sum_probs=117.7

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh-H
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-L   86 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~-~   86 (357)
                      +.++...+..++............|.+.++.       .+.+..+.+++.+...++..++.++.|+++||+|||+... .
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  287 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQE-------RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVF  287 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence            4455666667777777777778888888652       3444566788889999999999999999999999996211 1


Q ss_pred             HHHHHHHH----HHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHh
Q 018388           87 PLTLSIIP----LAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (357)
Q Consensus        87 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (357)
                      ......++    .............+.......+.+. +.+ ..+...+++.|..|+|+|++++++.+....+|..++|.
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~  365 (399)
T TIGR00893       288 ARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFF-GLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPI  365 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHh-chh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhH
Confidence            11111111    1111111111113333333344343 444 56889999999999999999999999999999999999


Q ss_pred             hhHHh----h-hHHHHHHHHHHHHHHHHHHH
Q 018388          163 AARFL----S-TTSAFQAATIVSMLAAAYMR  188 (357)
Q Consensus       163 ~~~~l----~-~~~~f~~~~~~~~~~~~~~~  188 (357)
                      +.+.+    + |+..|++.++..++..+..+
T Consensus       366 i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       366 VIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            98886    5 88888888777666554443

>PRK10504 putative transporter; Provisional

Probab=99.40  E-value=3.1e-11  Score=110.82  Aligned_cols=153  Identities=12%  Similarity=0.150  Sum_probs=116.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.+.......++...+........|.|.++       ..+.+....|+......++..++.++.|+++||+|||+++..
T Consensus       260 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~  332 (471)
T PRK10504        260 TRTFSLGLAGSFAGRIGSGMLPFMTPVFLQI-------GLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVA  332 (471)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            3455566666666666666666677888764       234445677888888888888888999999999999999998


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      +..+..+...+..+.+.....+.+.+..++.|+ +.+...+....+..+..|+|+|+.+.+..+....+|..+|+.+++.
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~  411 (471)
T PRK10504        333 TTLGLALVSLLFMLVALLGWYYLLPFVLFLQGM-VNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGL  411 (471)
T ss_pred             HHHHHHHHHHHHHhccccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            888887777666654321223444455667777 5566667888899999999999999999999999999999988876


Q ss_pred             h
Q 018388          167 L  167 (357)
Q Consensus       167 l  167 (357)
                      +
T Consensus       412 l  412 (471)
T PRK10504        412 L  412 (471)
T ss_pred             H
Confidence            4

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.39  E-value=7.9e-12  Score=114.77  Aligned_cols=145  Identities=14%  Similarity=0.071  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHH---ccchh-----HHHHHHHHHHHhhhccc
Q 018388           51 YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY---RRSIS-----FFYAYYALRTLTAMVCE  122 (357)
Q Consensus        51 ~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~r~l~G~~~~  122 (357)
                      ...++......++..++.++.|+++||+|||+.+..+.++..++..+..+   .....     ....+....+..+..+.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (481)
T TIGR00879       319 DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAM  398 (481)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHc
Confidence            44577788888889999999999999999999999888877777666652   11110     12222223333332122


Q ss_pred             chHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 018388          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (357)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~  196 (357)
                       ...+....++.|..|+++|+++++.......+|..++|.+.+.+    +|++.|++.++++++..++..++.||+++
T Consensus       399 -~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~  475 (481)
T TIGR00879       399 -GWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKG  475 (481)
T ss_pred             -cccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCC
Confidence             23356677789999999999999999999999999999887764    68888998888877777776666776543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.38  E-value=1.4e-11  Score=110.24  Aligned_cols=159  Identities=13%  Similarity=0.046  Sum_probs=113.2

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      +.......+............+|.+.++.       .+.+..+.+...+...++..++.++.|+++||+|||+.+.....
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  293 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQT-------LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            44555555556666666677788888652       23444566888888899999999999999999999998775554


Q ss_pred             HHHHHH--HHHHHc--cchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHH-HHHHHHHHHHhhHhhh
Q 018388           90 LSIIPL--AILAYR--RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAA  164 (357)
Q Consensus        90 ~~~~~~--~~~~~~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~  164 (357)
                      +..+..  ......  ++   .+.+....++.|+ ..+...+...+++.|.+|+++|+++.+. .+....+|..++|.++
T Consensus       294 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~  369 (394)
T TIGR00883       294 LAALLAVPLLMALLDSGS---FTLFFFLVLGLAL-IGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIA  369 (394)
T ss_pred             HHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHH-HHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHH
Confidence            433322  222222  33   5566677778887 5566678899999999999999999987 4566678888999888


Q ss_pred             HHh----h-hHHHHHHHHHH
Q 018388          165 RFL----S-TTSAFQAATIV  179 (357)
Q Consensus       165 ~~l----~-~~~~f~~~~~~  179 (357)
                      +.+    + |++.++.....
T Consensus       370 g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       370 AALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             HHHHHHcCcchhHHHHHHHH
Confidence            876    4 66666655444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09952 shikimate transporter; Provisional

Probab=99.38  E-value=9.1e-11  Score=106.51  Aligned_cols=167  Identities=14%  Similarity=0.127  Sum_probs=108.1

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHH
Q 018388           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (357)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~   96 (357)
                      .+...+.........|.+.++..       +.+......+.....+...++.+..|+++||+|||+.+..+.++..++..
T Consensus       259 ~~~~~~~~~~~~~~~~~y~~~~~-------g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~  331 (438)
T PRK09952        259 RLCELLTMYIVTAFALNYSTQNL-------GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAF  331 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            33444455555667777776532       22222233444455666778889999999999999998887766555443


Q ss_pred             HHHH---ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHH-HHHHHHHHhhHhhhHHh-----
Q 018388           97 ILAY---RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARFL-----  167 (357)
Q Consensus        97 ~~~~---~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l-----  167 (357)
                      ....   ..+  ..+.++...++.++ +.+...+...++++|.+|.|.|+.+.++.. .+..+|..++|.+.+++     
T Consensus       332 ~~~~~~~~~~--~~~~~~~~~~l~~~-~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~  408 (438)
T PRK09952        332 PFFMALEAQS--IFWIVFFSIMLANI-AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG  408 (438)
T ss_pred             HHHHHHHcCC--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3322   122  13333445566566 545556778899999999999998888854 44557888899888875     


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhccCC
Q 018388          168 -STTSAFQAATIVSMLAAAYMRVFLKDD  194 (357)
Q Consensus       168 -~~~~~f~~~~~~~~~~~~~~~~~~~e~  194 (357)
                       +|+.++...++..++..+.. +.+||+
T Consensus       409 ~~~~~~~~~~~~~~~i~~v~~-~~~~~~  435 (438)
T PRK09952        409 GSWHSVAIYLLAGCLISAMTA-LLMKDN  435 (438)
T ss_pred             CCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence             36777777766656555444 445653

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.38  E-value=8.8e-11  Score=106.33  Aligned_cols=177  Identities=16%  Similarity=0.212  Sum_probs=139.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcc--hhh
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK--AML   84 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk--~~l   84 (357)
                      .|+....+++.++..-+.+.+......|.++       +++.+..+...+.-+..+...+++..+|++.||+|.|  +++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~-------~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l  352 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATE-------VLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTL  352 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            4566677777777777777777777778765       4555566667777788889999999999999999999  888


Q ss_pred             hHHHHHHHHHHHHHHH--------ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHH
Q 018388           85 TLPLTLSIIPLAILAY--------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (357)
Q Consensus        85 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  156 (357)
                      +.+++.+.+..+...+        .++   -+.+.+.-++.|+ ..|..++.+.++.+|..|+++.+..+|++....-..
T Consensus       353 ~~~l~~~~~i~~~g~~G~~~~~~g~~~---~~~f~~~a~~~G~-~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~s  428 (477)
T PF11700_consen  353 LISLILWIIIPLYGLFGFWPSFFGLKS---PWEFWVLAVLIGL-FMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKAS  428 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCccc---HHHHHHHHHHHHH-HhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            8888777555444444        344   6778888899999 778888999999999999999999999999999999


Q ss_pred             HHhhHhhhHHh-----hhHHHHHHHHHHHHHHHHHHHHhccCCC
Q 018388          157 FVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (357)
Q Consensus       157 ~~~g~~~~~~l-----~~~~~f~~~~~~~~~~~~~~~~~~~e~~  195 (357)
                      ..+||.+-+.+     +.|+.+....++.++..++. ..+++++
T Consensus       429 s~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~  471 (477)
T PF11700_consen  429 SWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEK  471 (477)
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchh
Confidence            99999998886     35788887777755554443 4455443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.36  E-value=8e-11  Score=106.81  Aligned_cols=176  Identities=13%  Similarity=0.023  Sum_probs=110.7

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc--Ccchhh-hH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAML-TL   86 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~--Grk~~l-~~   86 (357)
                      ++.+.+..+............+|.++++       +.+.+..+.+...+...++..++.++.|+++||+  ++|+.. ..
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~-------~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~  317 (434)
T PRK11663        245 IWLLSFSYVLVYVVRAAINDWGNLYMSE-------TLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLI  317 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHH
Confidence            3444444444455555555677888754       3355556678888999999999999999999999  333332 22


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      ..+...+........+... .....+..+..|++..+. .........|..|+++|++++|+.+....+|..++|.+.+.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~  395 (434)
T PRK11663        318 FAAGILLSVGSLWLMPFAS-YVMQAACFFTIGFFVFGP-QMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAK  395 (434)
T ss_pred             HHHHHHHHHHHHHHccccc-HHHHHHHHHHHHHHHhhH-HHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHH
Confidence            1111111111111112111 223333344445422121 12334567899999999999999999999999999988877


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHhccCC
Q 018388          167 L----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (357)
Q Consensus       167 l----~~~~~f~~~~~~~~~~~~~~~~~~~e~  194 (357)
                      +    +|+..|+..+++.++..+..++..++.
T Consensus       396 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  427 (434)
T PRK11663        396 VLEIWHWTGFFVVISIAAGISALLLLPFLNAQ  427 (434)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5    788999988888777666555555443

>TIGR00897 2A0118 polyol permease family

Probab=99.36  E-value=9.3e-11  Score=105.33  Aligned_cols=167  Identities=9%  Similarity=-0.042  Sum_probs=114.9

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh-HH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-LP   87 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~-~~   87 (357)
                      .++...+..++...+........|.+.++        .+.+..+.+.+.+...++..++.+..|+++||+|||+.+. .+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~  294 (402)
T TIGR00897       223 NVLLGGMVRIINTIGLFGFAVFLPMFVAE--------LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFG  294 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence            34444455555555555556677877753        2344455678888889999999999999999999988764 33


Q ss_pred             HHHHHHHHHHHHH-----ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHh
Q 018388           88 LTLSIIPLAILAY-----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (357)
Q Consensus        88 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (357)
                      .+...+.......     .++   .+...+..++.|+ +.+...+ ....+.|.. +++|+++.|+.+....+|..++|.
T Consensus       295 ~l~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~G~-~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~  368 (402)
T TIGR00897       295 GVGCGIFTLALYYIPQHFGHS---FAVALIIAIALGI-FLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPA  368 (402)
T ss_pred             HHHHHHHHHHHHHHHHccCCc---HHHHHHHHHHHHH-HHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333322     123   5556677888887 4444434 455667754 568999999999999999999999


Q ss_pred             hhHHh----hhHHHHHHHHHHHHHHHHHHHH
Q 018388          163 AARFL----STTSAFQAATIVSMLAAAYMRV  189 (357)
Q Consensus       163 ~~~~l----~~~~~f~~~~~~~~~~~~~~~~  189 (357)
                      +++.+    ||+..+++.+++.++..+...+
T Consensus       369 i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       369 IAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            88875    7888888888776665555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.33  E-value=1e-10  Score=106.77  Aligned_cols=172  Identities=11%  Similarity=-0.032  Sum_probs=107.2

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc--Ccchhhh-
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAMLT-   85 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~--Grk~~l~-   85 (357)
                      .++...+..++...........+|.+.++.       .+.+....++....+.++..++.++.|+++||+  |||+... 
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-------~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~  326 (452)
T PRK11273        254 LLWYIAIANVFVYLLRYGILDWSPTYLKEV-------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV  326 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHH
Confidence            344555555555555556667889998752       233344567888888899999999999999999  4554322 


Q ss_pred             HHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHH-hhHhhh
Q 018388           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV-CGTLAA  164 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~  164 (357)
                      ....+..++.......+... .+...+..++.|. ...........+..|..|+++|++++|+.+....+|.. .||.+.
T Consensus       327 ~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~  404 (452)
T PRK11273        327 FFMTLVTIATIVYWLNPAGN-PTVDMACMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV  404 (452)
T ss_pred             HHHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHH-HHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhH
Confidence            22222333333322222111 3333344444454 21111123345677999999999999999888777754 478877


Q ss_pred             HHh----hhHHHHHHHHHHHHHHHHHHHH
Q 018388          165 RFL----STTSAFQAATIVSMLAAAYMRV  189 (357)
Q Consensus       165 ~~l----~~~~~f~~~~~~~~~~~~~~~~  189 (357)
                      +.+    ||+..|++.++.+++..+....
T Consensus       405 g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        405 GYTVDFFGWDGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            765    7899998887776665555443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.33  E-value=1.7e-10  Score=102.93  Aligned_cols=161  Identities=11%  Similarity=0.105  Sum_probs=121.0

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      +.++......++............|.+.+|        .+.+....|...+...++..+..++.|++.||+|+|+.+..+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~  276 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQA--------AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLS  276 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHHH--------CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            344545555555555555555666777753        244455678888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHH-HHHHHHHHhhHhhhHH
Q 018388           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARF  166 (357)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~  166 (357)
                      .+...+...+...+++   .+.+++..++.|+ +.+...+....++.+. +++++++..+..+ ...++|..+||.++|.
T Consensus       277 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~  351 (382)
T PRK11128        277 AICGVVRWGLMGSTTA---LPWLIVIQILHCG-TFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGF  351 (382)
T ss_pred             HHHHHHHHHHHHhhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888877777887   7788889999999 6677778888888886 5667788888876 5567888899999998


Q ss_pred             h----hhHHHHHHHHHHHHH
Q 018388          167 L----STTSAFQAATIVSML  182 (357)
Q Consensus       167 l----~~~~~f~~~~~~~~~  182 (357)
                      +    ++ ..++..+.+.++
T Consensus       352 l~~~~g~-~~~~~~~~~~~~  370 (382)
T PRK11128        352 LYQHLGA-GVFWVMALVALP  370 (382)
T ss_pred             HHHhccH-HHHHHHHHHHHH
Confidence            7    33 355555555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.32  E-value=1.7e-09  Score=99.51  Aligned_cols=166  Identities=13%  Similarity=0.103  Sum_probs=112.8

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHH
Q 018388           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQA-IIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL   95 (357)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~-~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~   95 (357)
                      .++...+........+.+..+       +.+.+..+.|+... ...++..++.++.|+++||+|+|+.+.++.++..+..
T Consensus       231 ~~l~~~~~~~~~~~~~~~l~~-------~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        231 IVLYKLGDAFAMSLTTTFLIR-------GVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            344444444444455556543       23555667788874 5567899999999999999999988776665545443


Q ss_pred             HHH---HHc-cchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----
Q 018388           96 AIL---AYR-RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (357)
Q Consensus        96 ~~~---~~~-~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----  167 (357)
                      ...   ... ++   .+.+...-+++.+ ..+...+...++..+..+++.+++..+..+...++|..+++.++|.+    
T Consensus       304 l~~~~l~~~~~~---~~~l~~~~~l~~~-~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~  379 (491)
T PRK11010        304 AGYWLLSITDKN---LYSMGAAVFFENL-CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH  379 (491)
T ss_pred             HHHHHHHhcccc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            322   232 23   4444445555554 33444466788889999999999999999999999988777777764    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhccCC
Q 018388          168 STTSAFQAATIVSMLAAAYMRVFLKDD  194 (357)
Q Consensus       168 ~~~~~f~~~~~~~~~~~~~~~~~~~e~  194 (357)
                      ||+..|.+.++++++..++..+ ++++
T Consensus       380 G~~~~f~~~~~~~l~~l~~~~~-~~~~  405 (491)
T PRK11010        380 GWPTFYLFSVAAAVPGLLLLLV-CRQT  405 (491)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            8999899888887776555544 4543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.32  E-value=6.3e-11  Score=102.33  Aligned_cols=296  Identities=14%  Similarity=0.083  Sum_probs=169.3

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----cCcchh
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAM   83 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr----~Grk~~   83 (357)
                      +.+..+....+-..+++..-....++|+++        .+++..+.+.+-....+...+.+|+.|..+||    |||||.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~--------lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP  103 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQS--------LGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP  103 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHH--------cCCCcccccccccccccccceecccccccccccccccccccc
Confidence            455566666666777777777888888774        33333455666667788889999999999995    899988


Q ss_pred             hhHHH-HHHHHHHHHHHHccchh--------------HHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhH-HHH
Q 018388           84 LTLPL-TLSIIPLAILAYRRSIS--------------FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRAS-AFG  147 (357)
Q Consensus        84 l~~~~-~~~~~~~~~~~~~~~~~--------------~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~-~~~  147 (357)
                      ++... +...++..+..++.+..              ....++++--+.=+ +.-..+..+.+++.|...++++.+ +++
T Consensus       104 fI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~-A~n~~qgp~ra~L~Dl~~~d~~~~~Ans  182 (498)
T KOG0637|consen  104 FILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDV-ANNTLQGPCRALLADLARGDAKKTRANS  182 (498)
T ss_pred             hHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHh-hhhhhhhhHHHHHHHhccChhhhhccch
Confidence            77544 45566666777665421              12233344444444 444566789999999998777666 999


Q ss_pred             HHHHHHHHHHHhhHhhhHHhhhHH--HHHHHHHHHHHHHHHH-------HHhccCCCCCCCCCCCCcccccccccccccC
Q 018388          148 ILLGVLSASFVCGTLAARFLSTTS--AFQAATIVSMLAAAYM-------RVFLKDDVPNDDDDDLTRPIITEETEGVNQN  218 (357)
Q Consensus       148 ~~~~~~~~g~~~g~~~~~~l~~~~--~f~~~~~~~~~~~~~~-------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  218 (357)
                      +...+.++|..+|..++++.+|+-  +|.....+.+.+..+-       .+..+++.......+|+             +
T Consensus       183 ~f~~f~avGnvLGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~-------------~  249 (498)
T KOG0637|consen  183 VFSFFMAVGNVLGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEK-------------P  249 (498)
T ss_pred             hHHHHHHhcceeeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheeccccccccccc-------------C
Confidence            999999999999999998887742  2222222211111111       11111111110000000             0


Q ss_pred             CCCCCCCccccccch-hHHHHHHh-hhcccchHHHHHHHHHHHHhhhhhhHHHHHhh-hhhcccCcch------------
Q 018388          219 ESNSPVKIPVCKKIP-SIRDLICL-LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFL-KAQFHFNKNQ------------  283 (357)
Q Consensus       219 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~------------  283 (357)
                      +..++.+........ ...+.... ...++.++.+++...+.+++...+.-+...++ ++.|+-++..            
T Consensus       250 ~s~~~~~~~~~~~~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~  329 (498)
T KOG0637|consen  250 LSPKGTTARSKSSKLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNA  329 (498)
T ss_pred             CCCCcccccccccCcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHh
Confidence            000000000000000 11121112 23367788888888888888887766666555 3344433221            


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHH
Q 018388          284 ----FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (357)
Q Consensus       284 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~  326 (357)
                          -.+-+.+..+...+.+ ....++.||+|.|+.+..+.....++
T Consensus       330 GV~~G~~GL~ins~~lgi~S-~~~~~l~~~~g~r~~y~~~~~~f~~~  375 (498)
T KOG0637|consen  330 GVRMGCLGLMLNSIVLGIYS-LLVEKLSRKFGTRKRYWGGVNAFGLA  375 (498)
T ss_pred             ccccchHHHHHHHHHHHHHH-HHHHHHHHhcCcceEEeehhHHHHHH
Confidence                1223445555555656 66688899999655544444433333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.32  E-value=1.8e-10  Score=103.25  Aligned_cols=169  Identities=11%  Similarity=0.055  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHH
Q 018388           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (357)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~   92 (357)
                      .....+.............|.+.++...    +.+.+....|+..++..+...++.+..|++.||+|||+.+.++.++.+
T Consensus       220 ~~l~~~~~~~~~~~~~~~~~~y~~~~~~----~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~  295 (396)
T TIGR00882       220 FVLYVVGVACVYDVFDQQFANFFTSFFA----TPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMS  295 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence            3333333333334444456777766331    112333456888888889999999999999999999999999988888


Q ss_pred             HHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHH-HHHHHHHHHHhhHhhhHHh----
Q 018388           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARFL----  167 (357)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l----  167 (357)
                      +...+...+++   .+.+++.++++|+ +.+........+..+..+++.++...+. .+....+|..++|.++|++    
T Consensus       296 l~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~  371 (396)
T TIGR00882       296 VRIIGSSFATT---ALEVVILKMLHAF-EVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI  371 (396)
T ss_pred             HHHHHHHhcCC---hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence            88877777777   7777888999998 5455545566677777777777776655 5678899999999888875    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q 018388          168 STTSAFQAATIVSMLAAAYMRV  189 (357)
Q Consensus       168 ~~~~~f~~~~~~~~~~~~~~~~  189 (357)
                      ||+..|.+.+++.++..+...+
T Consensus       372 G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       372 GFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHH
Confidence            7889999988887666655443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.31  E-value=7.9e-11  Score=105.84  Aligned_cols=131  Identities=14%  Similarity=0.088  Sum_probs=99.4

Q ss_pred             hhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHH-HHHHccch
Q 018388           26 MVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA-ILAYRRSI  104 (357)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~-~~~~~~~~  104 (357)
                      .....+|.+..+       +.+.+..+.+++.+...++..++.++.|+++||+|||+.+..+.+...+... .....++ 
T Consensus       256 ~~~~~~~~~~~~-------~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-  327 (405)
T TIGR00891       256 PIQDLLPTYLKA-------DLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGAN-  327 (405)
T ss_pred             hhhhhhHHHHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCc-
Confidence            334456777654       3345556778889999999999999999999999999998887766533322 2333344 


Q ss_pred             hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus       105 ~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                        .+.+.+..++.++ ..+...+...+++.|..|+++|++++|+.+....+|..+||.++|.+
T Consensus       328 --~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l  387 (405)
T TIGR00891       328 --VAVLGLGLFFQQM-LVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALL  387 (405)
T ss_pred             --hHHHHHHHHHHHH-HHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence              4555566566666 33444467788999999999999999999999999999999999887

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.31  E-value=9.1e-11  Score=103.81  Aligned_cols=148  Identities=18%  Similarity=0.224  Sum_probs=116.4

Q ss_pred             hhHHHHHHHHHHHHHHhhH-hhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388           10 LSHLFVTVFLWGFATMMVV-PAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      +.......++......... ...|.+.++.       .+.+..+.|+..+...++..++.++.+++.||+|||+.+..+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  284 (365)
T TIGR00900       212 LRTLLLLALLFNLVFAPAIVALFPYVQSKY-------LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAI  284 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence            4444444444444443333 6677777652       3445566789999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      .+.++......+.++  ..+.+.+..++.|+ +.+...+...+++.|..|+|+|++..+..+....+|..+||.++|.+
T Consensus       285 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l  360 (365)
T TIGR00900       285 FVIGLAILVVGLTPP--NFPLFLVLWFAIGV-GYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL  360 (365)
T ss_pred             HHHHHHHHHHHhhch--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777776653  16677788899998 66777788999999999999999999999999999999999998876

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.30  E-value=6.7e-11  Score=108.85  Aligned_cols=142  Identities=13%  Similarity=0.076  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHcc--chhHHHHHHHHHHHhhhcccchHHHHHHH
Q 018388           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALA  131 (357)
Q Consensus        54 g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~~~~~~~~~~~  131 (357)
                      ++......+...++.++.|+++||+|||+.++.+.++..++.+++....  +.... ....+.++.+.+......|....
T Consensus       309 ~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  387 (479)
T PRK10077        309 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-VALLSMLFYVAAFAMSWGPVCWV  387 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHhccccchhHH
Confidence            4455566778889999999999999999999999998888877765432  21111 22223333333121223366789


Q ss_pred             HHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhH----------HhhhHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 018388          132 YVADNISERQRASAFGILLGVLSASFVCGTLAAR----------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (357)
Q Consensus       132 ~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~----------~l~~~~~f~~~~~~~~~~~~~~~~~~~e~~~  196 (357)
                      ++.|.+|+++|++++++......+|..+++.+..          ..+|++.|++.++++++..++.+++.||+++
T Consensus       388 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        388 LLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  462 (479)
T ss_pred             HhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCC
Confidence            9999999999999999999999888888754433          2367788888887777776666666777654

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.30  E-value=4.6e-10  Score=97.26  Aligned_cols=172  Identities=12%  Similarity=0.070  Sum_probs=130.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.++......++...+.....+++.++++|       ..+.+....+++...+.++..+++...|+++|| +.|+.+..
T Consensus       210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~-------v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~  281 (394)
T COG2814         210 RPGVLLGLLATFLFMTGHFALYTYIRPFLES-------VAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIA  281 (394)
T ss_pred             CchHHHHHHHHHHHHcchhhhHHhHHHHHHH-------ccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHH
Confidence            4567777888888888888888888888876       335556678999999999999999999999999 99999998


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      ...+..+......+..+.  .+..++.-++.|+ ............+++ ..+|++..+.+++...+++|..+|..+||.
T Consensus       282 ~~~l~a~~~l~l~~~~~~--~~~~~~~~~~wg~-a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~  357 (394)
T COG2814         282 ALLLLALALLALTFTGAS--PALALALLFLWGF-AFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGL  357 (394)
T ss_pred             HHHHHHHHHHHHHHhcch--HHHHHHHHHHHHH-HhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877777777766665542  4455556666676 323322333344444 336899999999999999999999999988


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHh
Q 018388          167 L----STTSAFQAATIVSMLAAAYMRVF  190 (357)
Q Consensus       167 l----~~~~~f~~~~~~~~~~~~~~~~~  190 (357)
                      .    |+....+..+++.++..++....
T Consensus       358 v~~~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         358 VLDALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            5    77888888888877766665543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.30  E-value=3.7e-10  Score=101.68  Aligned_cols=175  Identities=14%  Similarity=0.048  Sum_probs=113.4

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      ++...+..++............|.+.++.       .+.+..+.|+......++..++.+..|+++||+|+|+.+..+.+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~  289 (406)
T PRK15402        217 FVAGALALGLVSLPLLAWIALSPVILISG-------EQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLW  289 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            34444444333333333344556666542       33445566777777778888999999999999999999988888


Q ss_pred             HHHHHHHHHHHcc--chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           90 LSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        90 ~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      ...++..+....+  +....+++++..++.|+ +.+...+.......+ .++++|++..+..+....+|..+|+.+++.+
T Consensus       290 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~-g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l  367 (406)
T PRK15402        290 PMVAGLLLAALATVISSHAYLWLTAGLSLYAF-GIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHA  367 (406)
T ss_pred             HHHHHHHHHHHHHHcccccHHHHHHHHHHHHH-HHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7777766665532  11115556777888888 556555555555443 3458999999999999999999999999886


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhccC
Q 018388          168 ----STTSAFQAATIVSMLAAAYMRVFLKD  193 (357)
Q Consensus       168 ----~~~~~f~~~~~~~~~~~~~~~~~~~e  193 (357)
                          ++....+..++..++...+...+.++
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK15402        368 YLGGGNGLFNLFNLANGLLWLLLVRIFLKD  397 (406)
T ss_pred             ccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                44443444433433333333344443

>PRK10054 putative transporter; Provisional

Probab=99.28  E-value=2e-10  Score=102.84  Aligned_cols=176  Identities=13%  Similarity=0.064  Sum_probs=122.6

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      |.++......++..+.........+.+..+.     .+.+.+....|+..+...+......++.|++.||+++|+.+..+
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~  280 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVV-----ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAG  280 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHh-----cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHH
Confidence            3444444555555555544444556665432     13345555668888888888888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHc-cchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           88 LTLSIIPLAILAYR-RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        88 ~~~~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      ..+..++.....+. ++   .+.+.+..++.|+ +.+...|...+++.+..|++.|++..+..+ ...+|..+||.++|.
T Consensus       281 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~  355 (395)
T PRK10054        281 TLCFVIGLVGFIFSGNS---LLLWGMSAAVFTV-GEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGV  355 (395)
T ss_pred             HHHHHHHHHHHHHcchH---HHHHHHHHHHHHH-HHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHH
Confidence            88888887777664 44   5556677888888 666666788889999999999999988655 455789999998888


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHhccC
Q 018388          167 L----STTSAFQAATIVSMLAAAYMRVFLKD  193 (357)
Q Consensus       167 l----~~~~~f~~~~~~~~~~~~~~~~~~~e  193 (357)
                      +    +.+..|++.+....+..++.....+|
T Consensus       356 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  386 (395)
T PRK10054        356 ILTTLPPWSLFVILALAIVAAWLLMLKGMRA  386 (395)
T ss_pred             HHHHcChhhHHHHHHHHHHHHHHHHHhcccc
Confidence            6    45566666655544444444333333

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.27  E-value=2.5e-10  Score=103.74  Aligned_cols=178  Identities=10%  Similarity=-0.023  Sum_probs=110.8

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      ++...+..++...........+|.+.++       ..+.+....++......++..++.+..|+++||+++|+....+..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~-------~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~  325 (438)
T TIGR00712       253 LWYIAIANVFVYLLRYGVLDWSPTYLKE-------VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVF  325 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHH-------ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHH
Confidence            3344444444444444555677888875       234445566888888899999999999999999976443333332


Q ss_pred             HHH---HHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHH-HHhhHhhhH
Q 018388           90 LSI---IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS-FVCGTLAAR  165 (357)
Q Consensus        90 ~~~---~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g-~~~g~~~~~  165 (357)
                      ...   ++.......+... .+......+..|++..+.. ........|.+|+++|+++.|+.+....+| ..+||.+.|
T Consensus       326 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G  403 (438)
T TIGR00712       326 FMTLVTIAVIVYWMNPAGN-PLVDMICMIVIGFLIYGPV-MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVG  403 (438)
T ss_pred             HHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHccHH-HHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHH
Confidence            221   1222222222111 2323333444454111222 222345779999999999999998877766 567888877


Q ss_pred             Hh----hhHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 018388          166 FL----STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (357)
Q Consensus       166 ~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~  196 (357)
                      .+    ||...+++.....++..+...+..||+++
T Consensus       404 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (438)
T TIGR00712       404 YTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR  438 (438)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            65    67888888877777777777777887653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.25  E-value=6.1e-10  Score=95.79  Aligned_cols=176  Identities=13%  Similarity=0.172  Sum_probs=135.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++++....++.++..=+.+-....-..+..       .+++++..+...+.....+..+++++++|++.||+|.|+++..
T Consensus       251 ~~~i~~FLiA~~~~~DGv~til~~~~~fg~-------~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~  323 (438)
T COG2270         251 RKNLVLFLIARFFYIDGVNTILAMGGVFGA-------ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMI  323 (438)
T ss_pred             ccchHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehH
Confidence            445666666666655555555555555543       3677888888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      +.++..+.++...+...   -..+.++-.+.|. ..|..++.+.++.++.+|+++-++.+|+++...-.+..+||.+-+.
T Consensus       324 ~lvi~~~~~~~~~~~~~---~~~f~i~gll~g~-s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v  399 (438)
T COG2270         324 GLVILSIAALYLIFLEG---ELDFWILGLLVGT-SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV  399 (438)
T ss_pred             HHHHHHHHHHHHHHccc---cHHHHHHHHHHHH-hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHH
Confidence            99999888887777666   4455677778888 7788889999999999999999999999999999999999998887


Q ss_pred             h-----hhHHHHHHHHHHHHHHHHHHHHhccCC
Q 018388          167 L-----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (357)
Q Consensus       167 l-----~~~~~f~~~~~~~~~~~~~~~~~~~e~  194 (357)
                      +     +-|..+....++..+. +......|++
T Consensus       400 ~t~iTg~~r~g~~~i~vll~iG-l~~L~~v~~~  431 (438)
T COG2270         400 ITQITGSSRAGVLSIIVLLLIG-LLLLLRVKVP  431 (438)
T ss_pred             HHHHhcchhhHHHHHHHHHHhh-HhhEEeecCC
Confidence            6     3466666555543333 2333445554

>TIGR00895 2A0115 benzoate transport

Probab=99.25  E-value=2.9e-10  Score=101.88  Aligned_cols=142  Identities=15%  Similarity=0.181  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHH
Q 018388           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (357)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~   93 (357)
                      +...++...........+|.+.++        .+.+..+.++..+...++..++.++.|+++||+|||+......+....
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  327 (398)
T TIGR00895       256 WLLYFMLLVGVYFLTNWLPKLMVE--------LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVF  327 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            334444444444555556644432        234445668888999999999999999999999999554444443333


Q ss_pred             HHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      ...+....++   .+...+..++.|+ +.+...+...+++.|.+|+++|++++++......+|..+||.++|++
T Consensus       328 ~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       328 AVLVGSTLFS---PTLLLLLGAIAGF-FVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHhhC---HHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            3333332445   5566777888888 66667788999999999999999999999999999999999998864

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.25  E-value=6.9e-10  Score=99.34  Aligned_cols=164  Identities=10%  Similarity=0.014  Sum_probs=112.3

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL-GTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~-~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      ++......++...+........+.+.+|        .+.+..+.|++...... ...++.++.|++.||+|+|+.+..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~--------~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~  281 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVD--------AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV  281 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHh--------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3444455555555555566667777754        35566677888877764 56677899999999999999988877


Q ss_pred             HHHHHHHHHHHH------ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCc-cchhHHHHHHHHHHHHHHHhhH
Q 018388           89 TLSIIPLAILAY------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLGVLSASFVCGT  161 (357)
Q Consensus        89 ~~~~~~~~~~~~------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~  161 (357)
                      +...+.......      .++   .........+.++ ..+...+...+...+..++ +++++.++..+...++|..+||
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~  357 (390)
T TIGR02718       282 GLAGSLALLWFAQAAFWLAPG---IAVAWSCSAFGSL-ITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIAS  357 (390)
T ss_pred             HHHHHHHHHHHHHHHcccCCc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHH
Confidence            665333222221      122   2333444455555 4455556777777777765 8899999999999999999999


Q ss_pred             hhhHHh----hhHHHHHHHHHHHHHHHH
Q 018388          162 LAARFL----STTSAFQAATIVSMLAAA  185 (357)
Q Consensus       162 ~~~~~l----~~~~~f~~~~~~~~~~~~  185 (357)
                      .++|.+    |++..|+..+++.++..+
T Consensus       358 ~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       358 SIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            999875    677888887766555433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.23  E-value=4.6e-10  Score=114.28  Aligned_cols=159  Identities=13%  Similarity=0.054  Sum_probs=121.7

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHH-HHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIY-LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      ++...+..++...........+|.+..+.       .+.+.. ..|++.+...++.++++++.|+++||+++|+.+.++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~  306 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKEV-------LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGA  306 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHH
Confidence            34444444444445555566778787653       233344 6789999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-
Q 018388           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (357)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-  167 (357)
                      ++.+++.++..+..+   .+.+++..++.|+ +.+...+...+++.+..|+++|+++++..+....+|..+++.+++.+ 
T Consensus       307 ~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        307 LGLALSLFLLPTAPS---LASVLVLFFLFGF-SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888777777   7777788888898 66777678899999999999999999999999999988888777665 


Q ss_pred             ----hhHHHHHHHHHH
Q 018388          168 ----STTSAFQAATIV  179 (357)
Q Consensus       168 ----~~~~~f~~~~~~  179 (357)
                          ++...+++.+.+
T Consensus       383 ~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        383 GLGLSPAGLFYLIALV  398 (1146)
T ss_pred             HhccCHHHHHHHHHHH
Confidence                234455554444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.23  E-value=1.8e-09  Score=95.94  Aligned_cols=179  Identities=15%  Similarity=0.182  Sum_probs=133.6

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      +++....+..++.......+....+.|+++.-       +.+....|.+.++..++-...-...+++..|+|.|+++.++
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~g-------g~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a  279 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELG-------GYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLA  279 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            44566677777888888888888898887631       12233456666777777778888899999999999999999


Q ss_pred             HHHHHHHHHHHHHc-cchhH-HHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHH-HHHHHHHhhHhhh
Q 018388           88 LTLSIIPLAILAYR-RSISF-FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLG-VLSASFVCGTLAA  164 (357)
Q Consensus        88 ~~~~~~~~~~~~~~-~~~~~-~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~  164 (357)
                      .+..++=..+.+.. ++... .........++|+ .-+..+.....++.+..|+|.|+++.++++. ..++|..+|..++
T Consensus       280 ~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~-tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig  358 (400)
T PF03825_consen  280 LVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGL-TFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG  358 (400)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999888888887 44111 1223344567998 7788889999999999999999999999876 4689999999999


Q ss_pred             HHh----------hhHHHHHHHHHHHHHHHHHHHHhccCC
Q 018388          165 RFL----------STTSAFQAATIVSMLAAAYMRVFLKDD  194 (357)
Q Consensus       165 ~~l----------~~~~~f~~~~~~~~~~~~~~~~~~~e~  194 (357)
                      |++          .|...+.+.+.+.++..++.+++.||+
T Consensus       359 G~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  359 GWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            986          234455566666555555555556654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.22  E-value=1.6e-09  Score=96.76  Aligned_cols=139  Identities=12%  Similarity=0.094  Sum_probs=93.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHH-ccchhHHHHHHHHHHHhhhcccch
Q 018388           46 CSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY-RRSISFFYAYYALRTLTAMVCEGS  124 (357)
Q Consensus        46 ~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~l~G~~~~~~  124 (357)
                      .+.+....++..+...++..++.++.|++.||+|+|+.+..+..+..++.++... .++   .+...+..++.+.+..+.
T Consensus       230 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~  306 (382)
T PRK10091        230 SGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGM---KTASLIFAFICCAGLFAL  306 (382)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHhh
Confidence            3455567799999999999999999999999999999999888877777655543 344   333444444555422222


Q ss_pred             HHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-----hhHHHHHHHHHHHHHHHHHHHH
Q 018388          125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRV  189 (357)
Q Consensus       125 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-----~~~~~f~~~~~~~~~~~~~~~~  189 (357)
                      ..+.......+..++|.++...  .+....+|..+||.++|.+     +|++.+...+.+..+.......
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        307 SAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             hHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence            2222333444444555555543  3567789999999998875     5788888877665555444333

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.22  E-value=2.1e-08  Score=89.05  Aligned_cols=303  Identities=13%  Similarity=0.096  Sum_probs=166.5

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      |..+.++...++...+..+.....|.++.+.. |+  ..    ...+...-...+..+++++..|.+.||..|+++...+
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~-p~--sL----l~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~   74 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIF-PG--SL----LPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTS   74 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC--Cc----HHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHH
Confidence            45577888999999999999999999988742 11  11    1223334455677788999999999999999987776


Q ss_pred             HHHHHHHHHH----HH--Hcc-c-----hhHHHHHHHHHHHhhhcccchHHHHHHHH--HhhCC------CccchhHHHH
Q 018388           88 LTLSIIPLAI----LA--YRR-S-----ISFFYAYYALRTLTAMVCEGSINCLALAY--VADNI------SERQRASAFG  147 (357)
Q Consensus        88 ~~~~~~~~~~----~~--~~~-~-----~~~~~~~~~~r~l~G~~~~~~~~~~~~~~--i~~~~------~~~~r~~~~~  147 (357)
                      .+..-++...    ..  +.. +     ......+++.-.+.|. . .-........  =-||+      +++++.+.++
T Consensus        75 l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-i-~~Las~~~~iavERDWVvvi~~~~~~~La~~NA  152 (432)
T PF06963_consen   75 LVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGA-I-ERLASIANTIAVERDWVVVIAGGDPGALARMNA  152 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHH-H-HHHHHhhhhheeccchhhhhcCCChhhHHHHHH
Confidence            6544333222    11  111 1     1112222222222222 0 1111111111  12332      2344566666


Q ss_pred             HHHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhcc----CCCCCCCCCCCCcccccccccccccCC
Q 018388          148 ILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLK----DDVPNDDDDDLTRPIITEETEGVNQNE  219 (357)
Q Consensus       148 ~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (357)
                      .+.-.--+.-+++|++.|.+    +.+....+.+...++..+.=++++.    +.|+-..++.+.++.    ..+.+++.
T Consensus       153 ~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~----~~~~~~~~  228 (432)
T PF06963_consen  153 TMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESE----SSSDEESS  228 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccc----cccccccc
Confidence            66666677788999888876    4455555555555554443332221    122111111000000    00000000


Q ss_pred             CCCCCC-ccccccchhH---HHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHH
Q 018388          220 SNSPVK-IPVCKKIPSI---RDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAG  295 (357)
Q Consensus       220 ~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  295 (357)
                      .++... ....+..+..   ++.++...+++.+...+...++ .+..-++...+..|+... |+++..+|.+-....+.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalL-Y~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~G  306 (432)
T PF06963_consen  229 SESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALL-YFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFG  306 (432)
T ss_pred             ccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHH-HHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Confidence            000000 0000111111   1223444545555444444444 445556688888899998 999999999999999999


Q ss_pred             HHHHHHHHhhhhhccchhHHHHHHHHHHHHH
Q 018388          296 TISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (357)
Q Consensus       296 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~  326 (357)
                      +.+. ++.+++.+|+|..+.-..+.......
T Consensus       307 l~gT-~~~p~l~~riGlvr~G~~~l~~q~~~  336 (432)
T PF06963_consen  307 LLGT-WVYPWLMKRIGLVRAGLWSLWWQWVC  336 (432)
T ss_pred             HHHH-HHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            9988 89999999999887766666655444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.21  E-value=3e-10  Score=104.16  Aligned_cols=149  Identities=18%  Similarity=0.065  Sum_probs=95.4

Q ss_pred             hHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcch-------hhhHHHHHHHHHHHHHH
Q 018388           27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA-------MLTLPLTLSIIPLAILA   99 (357)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~-------~l~~~~~~~~~~~~~~~   99 (357)
                      ....+|.+..+       +.+.+....+...++..++..++.++.|+++||+|||+       .......+.++...+..
T Consensus       271 ~~~~~p~~l~~-------~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~  343 (476)
T PLN00028        271 MDNIIAEYFYD-------RFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG  343 (476)
T ss_pred             HHhHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc
Confidence            34456777654       34555667789999999999999999999999998762       22233333333333344


Q ss_pred             HccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH---hhhHHHHHHH
Q 018388          100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---LSTTSAFQAA  176 (357)
Q Consensus       100 ~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~---l~~~~~f~~~  176 (357)
                      ..++   .+...+.-++.++ ..+...+...+++.+.. +++|+...|+......+|..++|.+.+.   .+|+..|++.
T Consensus       344 ~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~  418 (476)
T PLN00028        344 RANS---LGAAIVVMILFSI-FVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLM  418 (476)
T ss_pred             ccch---HHHHHHHHHHHHH-HHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHH
Confidence            4444   3333444444454 22223334555556654 4789999999988888888888776542   2588899888


Q ss_pred             HHHHHHHHHHH
Q 018388          177 TIVSMLAAAYM  187 (357)
Q Consensus       177 ~~~~~~~~~~~  187 (357)
                      +++.++..++.
T Consensus       419 ~~~~~i~~~~~  429 (476)
T PLN00028        419 GVMIIACTLPV  429 (476)
T ss_pred             HHHHHHHHHHH
Confidence            87766655444

>TIGR00898 2A0119 cation transport protein

Probab=99.21  E-value=8e-10  Score=102.43  Aligned_cols=136  Identities=18%  Similarity=0.141  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCC
Q 018388           58 AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI  137 (357)
Q Consensus        58 ~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~  137 (357)
                      ....+....+.+..+++.||+|||+.+..+.++.+++.++..+.++.. .+...+..++.++ +.+...+....+..|.+
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~  439 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL-YFLRTALAVLGKF-GITSAFQMVYLYTAELY  439 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHH-HHHHHHHHHHHHhcccc
Confidence            344566677888999999999999999999998888888877776521 1333344445454 44455577888999999


Q ss_pred             CccchhHHHHHHHHHHHHHHHhhHhhhHHh--hhHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 018388          138 SERQRASAFGILLGVLSASFVCGTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (357)
Q Consensus       138 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--~~~~~f~~~~~~~~~~~~~~~~~~~e~~~  196 (357)
                      |++.|++++|+.+....+|.+++|.+.+..  ++..++.+.+...++..+. .+++||++.
T Consensus       440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lpet~~  499 (505)
T TIGR00898       440 PTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGIL-TLFLPETKG  499 (505)
T ss_pred             cHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHcCcCCCC
Confidence            999999999999999999999999988832  4466777776665555444 456787654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.21  E-value=5.6e-10  Score=102.98  Aligned_cols=150  Identities=13%  Similarity=0.033  Sum_probs=113.9

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      +....+..+............+|.+.++       ..+.+..+.|+......++..++.++.|++.||+|+|+.+..+.+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~-------v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~  333 (495)
T PRK14995        261 ILSGVVMAMTAMITLVGFELLMAQELQF-------VHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMA  333 (495)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            3333444444444444445567777764       335566778999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      +..++..+..........+......++.|+ +.+...+.....+.+..|+|+++.+.+..+....+|..+|+.+.+.+
T Consensus       334 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~-g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i  410 (495)
T PRK14995        334 LSALSFYGLAMTDFSTQQWQAWGLMALLGF-SAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL  410 (495)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887776665543211114555667888898 66777777888888999999999999999999999999999887765

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.21  E-value=1.3e-09  Score=98.74  Aligned_cols=132  Identities=14%  Similarity=0.107  Sum_probs=92.6

Q ss_pred             hHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhH
Q 018388           27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISF  106 (357)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~  106 (357)
                      ....+|.+.++.        +.+....+...+...++..++.++.|+++||+|||+.+..+.++..+........++.. 
T Consensus       250 ~~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  320 (426)
T PRK12307        250 IFGLLPTYLAGE--------GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDN-  320 (426)
T ss_pred             HHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcccc-
Confidence            345667776541        33445668888888999999999999999999999999888877666655444333211 


Q ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHhh
Q 018388          107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS  168 (357)
Q Consensus       107 ~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  168 (357)
                      ...+....+..+. ......+....++.|.+|+++|++++|+......+|..+||.+.+++.
T Consensus       321 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~  381 (426)
T PRK12307        321 YLLLGACLFGLMA-TNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG  381 (426)
T ss_pred             HHHHHHHHHHHHH-hcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence            2212122222222 112223456678899999999999999999999999999999998873

>PRK15075 citrate-proton symporter; Provisional

Probab=99.21  E-value=1.5e-09  Score=98.59  Aligned_cols=139  Identities=17%  Similarity=0.188  Sum_probs=89.4

Q ss_pred             HHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHH-HH
Q 018388           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA-IL   98 (357)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~-~~   98 (357)
                      ............|.|.++.       .+.+..+.++......++..++.++.|+++||+|||+.+..+.....+... ..
T Consensus       250 ~~~~~~~~~~~~p~~l~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTV-------LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            3444455566688887652       233445567888888899999999999999999999988776544332221 11


Q ss_pred             H-HccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHH-HHHHHHHhhHhhhHHh
Q 018388           99 A-YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLG-VLSASFVCGTLAARFL  167 (357)
Q Consensus        99 ~-~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~g~~~g~~~~~~l  167 (357)
                      . ..++.. ........++.++ +.+...+....++.|..|+++|+++.++... ...++..++|.+.+.+
T Consensus       323 ~~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i  391 (434)
T PRK15075        323 SWLVAAPS-FARMLAVELWLSF-LYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL  391 (434)
T ss_pred             HHHHcCCc-hHHHHHHHHHHHH-HHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence            1 112111 3333333444455 3344545666889999999999999998544 3444466788777764

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.20  E-value=2.9e-09  Score=96.60  Aligned_cols=157  Identities=16%  Similarity=0.124  Sum_probs=93.9

Q ss_pred             HHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHH-
Q 018388           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA-   99 (357)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~-   99 (357)
                      ..........+|.++++.       .+.+..+.+...++..+...++.++.|+++||+|||+.+..+.++..+...... 
T Consensus       256 ~~~~~~~~~~lp~~l~~~-------~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~  328 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNT-------AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILS  328 (432)
T ss_pred             HHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            444445566778887652       233445567777777788888899999999999999988776554433322111 


Q ss_pred             -H--ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHH-HHHhhHhhhHHh---h-hHH
Q 018388          100 -Y--RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGTLAARFL---S-TTS  171 (357)
Q Consensus       100 -~--~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l---~-~~~  171 (357)
                       .  .++   ....+..-.+.+. ..+...+....+.+|.+|+|.|+++.|+......+ .....|.+.+.+   + |..
T Consensus       329 ~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~  404 (432)
T PRK10406        329 ALQNVSS---PYAAFGLVMCALL-IVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETA  404 (432)
T ss_pred             HHHcCCc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcH
Confidence             1  122   2221211122222 22333345667889999999999999998765443 233466666655   3 444


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 018388          172 AFQAATIVSMLAAAYMR  188 (357)
Q Consensus       172 ~f~~~~~~~~~~~~~~~  188 (357)
                      .++..++..++..+..+
T Consensus       405 ~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        405 FFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555444444433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.19  E-value=6.4e-10  Score=102.55  Aligned_cols=151  Identities=13%  Similarity=0.099  Sum_probs=115.5

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      .+....+..++..+........+|.+.++.       .+.+..+.|+......++..++.++.|++.||+|||+.+..+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~  328 (485)
T TIGR00711       256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQV-------LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGL  328 (485)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence            344445555555565555566778888752       3455667799999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHc-cchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           89 TLSIIPLAILAYR-RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        89 ~~~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      .+..++..+..+. +.....+.+....++.|+ +.+...+.......+..|+|+|+++.+..+....+|..+|+.+.+.+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~  407 (485)
T TIGR00711       329 ILYAVGFYWRAFTFTPDTPFLAIALPQFIRGF-GMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTI  407 (485)
T ss_pred             HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887776632 111114556667788888 66666666777777888999999999999999999999999888765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.19  E-value=6.4e-10  Score=101.13  Aligned_cols=149  Identities=15%  Similarity=0.166  Sum_probs=108.1

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      |.+.......++...+........+.+.++..       + +....++..++..++..++.+++++++||+|||+.+..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~  293 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVL-------G-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGG  293 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeec-------C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            44455555555555555554444444443211       1 123456777778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCC-------ccchhHHHHHHHHHHHHHHHhh
Q 018388           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-------ERQRASAFGILLGVLSASFVCG  160 (357)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~~g  160 (357)
                      .++..++.+...+.++  ..+.+.+..++.|+ +.+...+...++++|..+       ++++|...++.+....+|..+|
T Consensus       294 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg  370 (437)
T TIGR00792       294 ILLMVLGYLIFFFAGS--NLPLILVLIILAGF-GQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALA  370 (437)
T ss_pred             HHHHHHHHHHHHHcch--hHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence            8888888777666542  15556677778887 666667888899988865       4567899999999999999999


Q ss_pred             HhhhHHh
Q 018388          161 TLAARFL  167 (357)
Q Consensus       161 ~~~~~~l  167 (357)
                      +.+.+.+
T Consensus       371 ~~i~g~l  377 (437)
T TIGR00792       371 GFLVGLI  377 (437)
T ss_pred             HHHHHHH
Confidence            9888764

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.18  E-value=1e-09  Score=111.49  Aligned_cols=161  Identities=14%  Similarity=0.015  Sum_probs=121.1

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      +.++...+..++..+........+|.|.++.       ++.+....|++.+.+.++..+++++.|+++||.++++.+..+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-------~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~  297 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKET-------LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIG  297 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHH
Confidence            3455555555555555556666788888763       344556789999999999999999999999998888777766


Q ss_pred             HHHHHHHHHHHHHc--------------------cchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHH
Q 018388           88 LTLSIIPLAILAYR--------------------RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFG  147 (357)
Q Consensus        88 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~  147 (357)
                      .++.++..+...+.                    ++   .+.+++..++.|+ +.+...+...+++.+.+|+++||+++|
T Consensus       298 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~G~v~g  373 (1140)
T PRK06814        298 ALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH---GWRILIDLFGLAA-AGGLYIVPLFAALQAWANPAHRARVIA  373 (1140)
T ss_pred             HHHHHHHHHHHHhcccccccccccccchhhhhcccc---cHHHHHHHHHHHH-HHHHhHHHHHHHHHhhCCcccceeeeH
Confidence            66655555444442                    44   5667788888898 667777889999999999999999999


Q ss_pred             HHHHHHHHHHHhhHhhhHHh-----hhHHHHHHHHHH
Q 018388          148 ILLGVLSASFVCGTLAARFL-----STTSAFQAATIV  179 (357)
Q Consensus       148 ~~~~~~~~g~~~g~~~~~~l-----~~~~~f~~~~~~  179 (357)
                      ..+....+|..+|+.+++.+     +....+++.+.+
T Consensus       374 ~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        374 ANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999999999999888776     334555544443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.17  E-value=4e-09  Score=95.06  Aligned_cols=264  Identities=17%  Similarity=0.167  Sum_probs=154.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-----CcchhhhHHHHHHHHHHHHHHHccc-hhHHHHHHHHHHHhh
Q 018388           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKAMLTLPLTLSIIPLAILAYRRS-ISFFYAYYALRTLTA  118 (357)
Q Consensus        45 ~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----Grk~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~l~G  118 (357)
                      ++++++.+.....+...+.. ...|++|.++|.+     .||+-++++.++..++...++..++ ........+.-++..
T Consensus        19 ~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~   97 (433)
T PF03092_consen   19 DLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLAS   97 (433)
T ss_pred             HcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHH
Confidence            44555666666666666664 5688999999976     3455566677777666665555433 111344445555666


Q ss_pred             hcccchHHHHHHHHHhhCCC--ccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhcc
Q 018388          119 MVCEGSINCLALAYVADNIS--ERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLK  192 (357)
Q Consensus       119 ~~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~  192 (357)
                      + +.......+.+++.|...  +++|+...+.......+|.+++..++|.+    +++..|.+.+++..+..+...+..+
T Consensus        98 ~-g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen   98 F-GYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             H-HHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            6 667777889999998875  34477888888888899999998888876    6688888888777766666566556


Q ss_pred             CCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHH-HHHHHHHhhhhhhHHHHH
Q 018388          193 DDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAV-VAFFSGLSEGGMQASFLY  271 (357)
Q Consensus       193 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  271 (357)
                      | ++.+++. +.           ... .++.........++..++.++.+. ++.++...+ ..++............-.
T Consensus       177 e-~~~~~~~-~~-----------~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~~~i~~~~~~~~~~~~~~~~~~~a~~fy  241 (433)
T PF03092_consen  177 E-RKVRPAD-EV-----------FSF-GKEEVPCLFGSFREQLSELWRALQ-QRAIWQPILFFIFFFNLPPSISSASSFY  241 (433)
T ss_pred             h-ccccccc-hh-----------hcc-cccccchhhHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhccCCCCccEEE
Confidence            5 2222111 00           000 000000000001223344444443 566665555 333332222221111112


Q ss_pred             hhhhhcc---cCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHH
Q 018388          272 FLKAQFH---FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (357)
Q Consensus       272 ~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~  326 (357)
                      +..+..+   +++...+.+..+..++.+++. .+..+...+.+-|+++....++..+.
T Consensus       242 ~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~-~~y~~~~~~~~~R~~~~~t~~~~~~~  298 (433)
T PF03092_consen  242 FQTDALGGPHFSPSFYGTLSIVGSIASLLGI-LLYRKYFSNWSWRRIFVVTTLVSVLA  298 (433)
T ss_pred             EEeccccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            3334455   788888888866666666766 55556666667788777766665544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.15  E-value=1e-08  Score=90.00  Aligned_cols=182  Identities=12%  Similarity=0.067  Sum_probs=138.4

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      |+++.+.+........+...-.-.|.|..+..    ++.+.+....|++.++..+.-.+.-.+..++.+|+|.|+.++++
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f----~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Llla  295 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF----QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLA  295 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHH
Confidence            44554444333333344444444666766532    24455666789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHH-HHHHHHHHHhhHhhhHH
Q 018388           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARF  166 (357)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~  166 (357)
                      ..+..+=..+++++++   .+.+.+.+.+.|+ .-+........|+++.+|+|..++...+. +.+.++|..+.+.++|.
T Consensus       296 g~i~~iRi~~~~~~~~---~~~i~~~klLH~~-e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~  371 (412)
T PF01306_consen  296 GVIMAIRIIGSGFATN---PWVISLIKLLHAL-EFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGY  371 (412)
T ss_dssp             HHHHHHHHHHHHT--S---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcc---hHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence            9999999999999999   8899999999999 66777788999999999988877777664 67788888888888887


Q ss_pred             h----hhHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018388          167 L----STTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (357)
Q Consensus       167 l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~  197 (357)
                      +    |.+..|++.+.+.+...++..+.++++++.
T Consensus       372 lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  372 LYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             hHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            5    778899999988787778888877765543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.15  E-value=6.2e-09  Score=93.15  Aligned_cols=140  Identities=11%  Similarity=0.035  Sum_probs=102.1

Q ss_pred             HhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHH
Q 018388           28 VPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFF  107 (357)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~  107 (357)
                      ...+|.+.++.       ++.+..+.|++.+...++..++++..+++.||.++|+.+..+.. .++...+..+.++   .
T Consensus       225 ~~~~~~~~~~~-------lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~---~  293 (393)
T PRK11195        225 RFLVLAWAPVA-------LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHS---L  293 (393)
T ss_pred             HHHHHHHHHHH-------cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhH---H
Confidence            34455566542       34455678999999999999999999999999999988877753 3344444455555   5


Q ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHhhCCCccc-hhHHHHHHHHHHHHHHHhhHhhhHHh---h--hHHHHHHHHHH
Q 018388          108 YAYYALRTLTAMVCEGSINCLALAYVADNISERQ-RASAFGILLGVLSASFVCGTLAARFL---S--TTSAFQAATIV  179 (357)
Q Consensus       108 ~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~-r~~~~~~~~~~~~~g~~~g~~~~~~l---~--~~~~f~~~~~~  179 (357)
                      +...+..++.|+ +.+...+...+.+.+..|+|. ++++.+..+....+|..++..+.+.+   +  ++..+...+.+
T Consensus       294 ~~~~~~~~~~G~-~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (393)
T PRK11195        294 LPAYPLLILIGA-LGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLL  370 (393)
T ss_pred             HHHHHHHHHHHH-hhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            666677778888 666666778888888766654 79999999999999999998887765   3  34444444444

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.15  E-value=3.1e-07  Score=82.58  Aligned_cols=291  Identities=12%  Similarity=0.120  Sum_probs=172.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhcCcchhhh
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVM-MPVIGNLSDQYGRKAMLT   85 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~-~~~~G~l~dr~Grk~~l~   85 (357)
                      .+.+....+..|+..+++++.-|.=..+..       +..+.......++-+...+...+. .++.+++++|++|++.+-
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv-------~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~   78 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRDTKDTLVV-------TAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFY   78 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhheee-------cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHH
Confidence            345566666667776776665544222211       111112234566666666666666 899999999999999988


Q ss_pred             HHHHHHHHHHHHHHHc--cchhH--------------------------HHHHHHHHHHhhhcccchHHHHHHHHHhhCC
Q 018388           86 LPLTLSIIPLAILAYR--RSISF--------------------------FYAYYALRTLTAMVCEGSINCLALAYVADNI  137 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~--~~~~~--------------------------~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~  137 (357)
                      .....+.....++++.  ++.+.                          .|...+..+...+.+.-...-....+.+|.+
T Consensus        79 ~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~  158 (472)
T TIGR00769        79 TVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQIT  158 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8777776666665554  11000                          2223333444444222222226778899999


Q ss_pred             CccchhHHHHHHHHHHHHHHHhhHhhhHHhh------------hH----HHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 018388          138 SERQRASAFGILLGVLSASFVCGTLAARFLS------------TT----SAFQAATIVSMLAAAYMRVFLKDDVPNDDDD  201 (357)
Q Consensus       138 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~------------~~----~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~  201 (357)
                      +.+|-.|..++...+.++|.++|+.+..++.            |.    ..+.+.++...+...+ ...+.+....+++.
T Consensus       159 t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~-~~~l~~~~~~~~~~  237 (472)
T TIGR00769       159 TIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILL-YWWVNRNVLTDPRS  237 (472)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccCCccc
Confidence            9999999999999999999999998877653            21    2233333333333333 33333222111110


Q ss_pred             CCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCc
Q 018388          202 DLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNK  281 (357)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  281 (357)
                      .+             .+  +   ++++++.+....+..+.+.++|.++...+...+++......+...-..+++.+- ++
T Consensus       238 ~~-------------~~--~---~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p-~~  298 (472)
T TIGR00769       238 YN-------------PA--L---KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYP-SP  298 (472)
T ss_pred             cc-------------hh--h---ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CH
Confidence            00             00  0   111112233566777778889999888888888877777776655556666542 33


Q ss_pred             ch----HHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHH
Q 018388          282 NQ----FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (357)
Q Consensus       282 ~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i  325 (357)
                      ++    .|.+....++...+.+ ++.+++.+|+|-+....+.-+...+
T Consensus       299 ~~~~~f~g~~~~~~gi~tl~~~-l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       299 NEYSAFMGDFSTWTGVVSVTMM-LLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            22    4555566666666667 5559999999987765554444433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.14  E-value=7.5e-09  Score=93.04  Aligned_cols=135  Identities=16%  Similarity=0.093  Sum_probs=84.8

Q ss_pred             chhHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHH---HHcc-chhHHHHHHHHHH----H
Q 018388           46 CSLAIYLSGFQQAIIG-LGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL---AYRR-SISFFYAYYALRT----L  116 (357)
Q Consensus        46 ~~~s~~~~g~~~~~~~-~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~r~----l  116 (357)
                      .+.+..+.|++.+... ++..++.++.|++.||+|||+.+..+..+..+..+..   +..+ +   .+.+.+.-+    .
T Consensus       240 ~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~~~~~~~~  316 (402)
T PRK11902        240 AGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKH---LWTMALAIGIENLC  316 (402)
T ss_pred             cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHH
Confidence            3555667788776544 4678899999999999999998877776655554333   3433 3   344444443    3


Q ss_pred             hhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhH----HhhhHHHHHHHHHHHHHHHHHHH
Q 018388          117 TAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR----FLSTTSAFQAATIVSMLAAAYMR  188 (357)
Q Consensus       117 ~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~----~l~~~~~f~~~~~~~~~~~~~~~  188 (357)
                      .|+ ..+...+....++.+..|.++++    ..+...++|...++.++|    .+||+..|.+.++++++..++.+
T Consensus       317 ~g~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~  387 (402)
T PRK11902        317 GGM-GTAAFVALLMALCNRSFSATQYA----LLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLW  387 (402)
T ss_pred             HHH-HHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            444 33444556666667766655554    344444455543434444    45899999999888777655543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.13  E-value=2.9e-09  Score=98.56  Aligned_cols=137  Identities=16%  Similarity=0.148  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccch-hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCC
Q 018388           59 IIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSINCLALAYVADNI  137 (357)
Q Consensus        59 ~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~  137 (357)
                      +..++..++.+..++++||+|||+.++.+..+.+++..+.....+. .....+...-+...+++.+ ..+....+.+|.+
T Consensus       343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~~  421 (502)
T TIGR00887       343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFG-PNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcC-CCchhhhhhhccC
Confidence            3445666788899999999999999988887777666555543210 0011111111111111112 2245667789999


Q ss_pred             CccchhHHHHHHHHHHHHHHHhhHhhhHHh-h-------------hHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018388          138 SERQRASAFGILLGVLSASFVCGTLAARFL-S-------------TTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (357)
Q Consensus       138 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-~-------------~~~~f~~~~~~~~~~~~~~~~~~~e~~~~  197 (357)
                      |.+.|+++.++.+....+|..++|.+.+++ .             +...|++.++..++..+. .+++||++.+
T Consensus       422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~  494 (502)
T TIGR00887       422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGK  494 (502)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH-heEeccCCCC
Confidence            999999999999999999999999887764 2             244667776665655444 4667987654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.13  E-value=1.9e-09  Score=96.70  Aligned_cols=128  Identities=13%  Similarity=0.050  Sum_probs=96.7

Q ss_pred             HhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-cCcchhhhHHHHHHHHHHHHHHHccchhH
Q 018388           28 VPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRSISF  106 (357)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~  106 (357)
                      ...+|.+.++..+        +....|++.+...++......+.+++.|| ++.|+.+..+..+..++..+...+++   
T Consensus       228 ~~~~p~~~~~~~~--------~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~---  296 (400)
T PRK11646        228 MLMLPIMVNDIAG--------SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN---  296 (400)
T ss_pred             HHhhhhhHHhhcC--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh---
Confidence            3456777765311        12345777777777666666666777664 66677777888788888777777777   


Q ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388          107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus       107 ~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      ++.+.+...+.++ +.+...|...+++.|..|+++|++.++..+....+|..+||.++|.+
T Consensus       297 ~~~~~~~~~l~~~-g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l  356 (400)
T PRK11646        297 LQQLFTLICLFYI-GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWL  356 (400)
T ss_pred             HHHHHHHHHHHHH-HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHH
Confidence            6666666777777 55666678889999999999999999999999999999999999986

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.13  E-value=3.1e-09  Score=91.43  Aligned_cols=177  Identities=12%  Similarity=0.063  Sum_probs=132.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc--Ccchhh
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAML   84 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~--Grk~~l   84 (357)
                      ++.++.+.++.++..+....+.--.|.|+.|       ..+.+....++..+.+-.+.+.+++++|+++||.  |||.+.
T Consensus       251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e-------~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~  323 (448)
T COG2271         251 NKLIWLLALANVFVYVVRYGINDWGPLYLSE-------VKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM  323 (448)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------hcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence            5678888999999989888888888999886       3345556678999999999999999999999996  677655


Q ss_pred             h-HHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHH-HHHhhHh
Q 018388           85 T-LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGTL  162 (357)
Q Consensus        85 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~  162 (357)
                      - ++.+...++.+..-.+++. .++...++-++.|+.-.|.. -..-....|..|++--|.+.|..+.+..+ |...+..
T Consensus       324 ~~i~~~~i~~~~~~~w~~~~~-~~~l~~~~l~~iGf~IyGPq-mLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~  401 (448)
T COG2271         324 ALIFMLLITASLVLYWLAPNG-SYLLDAILLFIIGFLIYGPQ-MLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGL  401 (448)
T ss_pred             HHHHHHHHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHHhhHH-HHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCC
Confidence            4 4455555555566666653 25667777888888444444 35666678999999999999999999988 7777766


Q ss_pred             hhHHh----hhHHHHHHHHHHHHHHHHHHHHhcc
Q 018388          163 AARFL----STTSAFQAATIVSMLAAAYMRVFLK  192 (357)
Q Consensus       163 ~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~  192 (357)
                      .-+++    ||...|.+..+.++++.++......
T Consensus       402 ~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         402 PLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             cceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            65554    8998888877766665555444333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.11  E-value=2.4e-09  Score=96.47  Aligned_cols=160  Identities=13%  Similarity=0.021  Sum_probs=102.0

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchh-hhHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM-LTLPL   88 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~-l~~~~   88 (357)
                      ++...+..+............+|.++++.      ..+.+....+...+...++..++.+..|+++||++||+. .....
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~------~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~  317 (412)
T TIGR02332       244 IMLYTLAYFCLTNTLSAINIWTPQILQSF------NQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPY  317 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHH
Confidence            33444444555555666677888888652      123344567888899999999999999999999998775 33344


Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-
Q 018388           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (357)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-  167 (357)
                      +...++..+....++   ......+-.+.++ +.....+.......|..|+|+|++++|+.+....+|..++|.+.+.+ 
T Consensus       318 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~  393 (412)
T TIGR02332       318 LFAAAGWLLASATDH---NLIQLLGIIMASM-GSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILK  393 (412)
T ss_pred             HHHHHHHHHHHhcCC---HHHHHHHHHHHHH-HhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence            344443322222222   1111111122222 21122233444556778999999999999999999999999887764 


Q ss_pred             ----hhHHHHHHHHHH
Q 018388          168 ----STTSAFQAATIV  179 (357)
Q Consensus       168 ----~~~~~f~~~~~~  179 (357)
                          +|++.+++.+++
T Consensus       394 ~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       394 DATGSFNSGLWFVAAL  409 (412)
T ss_pred             ccCCCCchhHHHHHHH
Confidence                488888766554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.11  E-value=1.3e-08  Score=91.20  Aligned_cols=131  Identities=11%  Similarity=0.115  Sum_probs=95.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHH-HHHHHHHHHHccchhHHHHHHHHHHHhhhcccchH
Q 018388           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL-SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI  125 (357)
Q Consensus        47 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~  125 (357)
                      +.+....|+....+.++..++.++.|++.||.+ |+.+..+..+ ......+....++   .+.+.+..++.|+ +.+..
T Consensus       248 g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~l~G~-~~~~~  322 (394)
T PRK10213        248 GFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSD---KIVATGVAIIWGL-TFALV  322 (394)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHhh
Confidence            444556788889999999999999999999964 4444444333 3333444445555   6667778888898 66777


Q ss_pred             HHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHHHHHH
Q 018388          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLA  183 (357)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~~~~~  183 (357)
                      .+...+++.+..| +++++..+......++|..+||.++|.+    |++..+...+.+..+.
T Consensus       323 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        323 PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            7788888888887 5567888888888899999999999886    5677777766554443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.09  E-value=3.7e-09  Score=90.96  Aligned_cols=172  Identities=16%  Similarity=0.094  Sum_probs=127.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      +++.|.+.+..+..+-+.--....+|.|.++       +++.+....|...+.+.+...+..+.+|+++||+|.+|++..
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~-------~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~  289 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVT-------QFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLA  289 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHH
Confidence            4566777777776666666667788999876       566667777899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcc-------ch-hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHH
Q 018388           87 PLTLSIIPLAILAYRR-------SI-SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV  158 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  158 (357)
                      .....+++..+....+       +. .....++...+..|+ +.|    ..+.++...+| ++-+.+.|+.....++|..
T Consensus       290 ~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~-GnG----svfk~Ip~if~-~~~G~v~G~vga~G~lGGf  363 (417)
T COG2223         290 VFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGL-GNG----SVFKMIPVIFP-KETGAVTGIVGAIGGLGGF  363 (417)
T ss_pred             HHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhcc-Ccc----hheeechHHHH-hhhhHHHHHHHHhcccccc
Confidence            9888888887777664       21 112345566666776 333    34556666665 4778899999999999987


Q ss_pred             hhHhhhHHh-----hhHHHHHHHHHHHHHHHHHHHHhc
Q 018388          159 CGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFL  191 (357)
Q Consensus       159 ~g~~~~~~l-----~~~~~f~~~~~~~~~~~~~~~~~~  191 (357)
                      .-|..-+..     .++..|++...+.+++.+..+...
T Consensus       364 ~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y  401 (417)
T COG2223         364 FLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALY  401 (417)
T ss_pred             chhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777665543     478888888888777766655433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.08  E-value=1.4e-08  Score=90.82  Aligned_cols=151  Identities=17%  Similarity=0.149  Sum_probs=108.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccc----h-hHHH-HHHHHHHHhhhc
Q 018388           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS----I-SFFY-AYYALRTLTAMV  120 (357)
Q Consensus        47 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~----~-~~~~-~~~~~r~l~G~~  120 (357)
                      +.+....-+......+...+.++....+.||+|||+.++.+..+..+..+++.....    . .+.+ ..+++.++..+.
T Consensus       301 G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~  380 (485)
T KOG0569|consen  301 GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIIS  380 (485)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            344444566666678888999999999999999999999999888888777665421    1 1111 122333333331


Q ss_pred             -ccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhh----HhhhHHhhhHHHHHHHHHHHHHHHHHHHHhccCCC
Q 018388          121 -CEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG----TLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDV  195 (357)
Q Consensus       121 -~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g----~~~~~~l~~~~~f~~~~~~~~~~~~~~~~~~~e~~  195 (357)
                       +.|. -|...-+.+|.+|++.|+.+++......-+...+-    |.+-..+|- +.|.+..+.+.+..+..++.+||++
T Consensus       381 f~~G~-gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  381 FAIGP-GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             hhcCC-CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence             3333 37888999999999999999999888777665443    444455555 7788888888888889999999998


Q ss_pred             CCCC
Q 018388          196 PNDD  199 (357)
Q Consensus       196 ~~~~  199 (357)
                      .+..
T Consensus       459 gr~~  462 (485)
T KOG0569|consen  459 GRTP  462 (485)
T ss_pred             CCCH
Confidence            6543

>TIGR00901 2A0125 AmpG-related permease

Probab=99.07  E-value=3.2e-09  Score=93.83  Aligned_cols=136  Identities=13%  Similarity=0.088  Sum_probs=100.9

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIG-LGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~-~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      ++.+.+..++...........+|.+.++        .+.+..+.|.+.++.. ++..++.+++|++.||+|||+.+..+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~  282 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLD--------MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFG  282 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            4444445555556666666778888764        2444556677776655 567889999999999999999988888


Q ss_pred             HHHHHHHHHHHHc-cch-------hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHH
Q 018388           89 TLSIIPLAILAYR-RSI-------SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLS  154 (357)
Q Consensus        89 ~~~~~~~~~~~~~-~~~-------~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  154 (357)
                      ++..+...+..+. .+.       ...+.+..+.++.++ +.+...+...+++.|.+|+|+|++.+++.+...+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       283 IVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAV-TGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            8877776655543 111       125667778888888 7788889999999999999999999999887654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.07  E-value=1.5e-09  Score=95.59  Aligned_cols=141  Identities=18%  Similarity=0.185  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHH
Q 018388           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLA-IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (357)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~   91 (357)
                      .....+...+........+|.+.++       +.+.+ ..+.+...++..+...++.++.|+++||+|+|+.........
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  283 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQE-------VLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLL  283 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCH-------HHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhh-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            4445555555666677778887443       33444 567788899999999999999999999999988888777777


Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhH
Q 018388           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (357)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  161 (357)
                      .+.................+..-++.|+ +.+...+...+++.|..|+|+|+++.+..+...++|..+||
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  284 ILGALGLLLLPFSSSPVWLIIALFLIGF-GFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHCCSHHHCHHHHHHHHHHHHHH-HHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            7766666555432224566667788888 77777899999999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.06  E-value=1.9e-08  Score=89.59  Aligned_cols=144  Identities=15%  Similarity=0.065  Sum_probs=90.5

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHH
Q 018388           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (357)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~   90 (357)
                      ....+..++...+........|.+..+       +.+.+..+.|+..+...++..++.++.|++.||+|||+.+..+..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~  269 (377)
T PRK11102        197 LGYMLASGFSFAGMFSFLTAGPFVYIE-------LNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWI  269 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            333344444444444555555666554       2344556779999999999999999999999999999998888766


Q ss_pred             HHHHHHHHHH---cc-chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHH-HHHHHHhhHhhhH
Q 018388           91 SIIPLAILAY---RR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV-LSASFVCGTLAAR  165 (357)
Q Consensus        91 ~~~~~~~~~~---~~-~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~  165 (357)
                      ..+..+....   .+ +   .+...++-.+.+. ..+...+.....+.|..| ++|+++.+..... .++|..+|+.+++
T Consensus       270 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        270 QFIMGIWLVVSALLDLG---FWALVVGVAAFVG-CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4443332221   12 2   3333333333333 333444555666777666 7899998887554 4577777777654


Q ss_pred             H
Q 018388          166 F  166 (357)
Q Consensus       166 ~  166 (357)
                      .
T Consensus       345 ~  345 (377)
T PRK11102        345 A  345 (377)
T ss_pred             c
Confidence            3

>PRK09848 glucuronide transporter; Provisional

Probab=99.06  E-value=3.8e-09  Score=96.37  Aligned_cols=152  Identities=11%  Similarity=0.079  Sum_probs=108.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      +|.+....+..++...+........|.+.++       ..+.+....++......++..++.++++++.||+|+|+.+..
T Consensus       227 n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~  299 (448)
T PRK09848        227 NRPLFMLCIGALCVLISTFAVSASSLFYVRY-------VLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLI  299 (448)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhheeeEee-------ecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            3455555566666666655555556666543       223333444454454567778899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCcc-------chhHHHHHHHHHHHHHHHh
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER-------QRASAFGILLGVLSASFVC  159 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~~  159 (357)
                      +.++..++.+...+.++.. .+.+++..++.|+ +.+...+...++.+|..|++       ++|...+..+....+|..+
T Consensus       300 g~~~~~i~~~~~~~~~~~~-~~~~~~~~~l~g~-G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ai  377 (448)
T PRK09848        300 GALLGTCGYLLFFWVSVWS-LPVALVALAIASI-GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAI  377 (448)
T ss_pred             HHHHHHHHHHHHHHcCchh-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHH
Confidence            9988888877776654211 5556667778888 66777788899999988754       3588889999999999999


Q ss_pred             hHhhhHHh
Q 018388          160 GTLAARFL  167 (357)
Q Consensus       160 g~~~~~~l  167 (357)
                      |+.+.+.+
T Consensus       378 g~~i~g~~  385 (448)
T PRK09848        378 GGSIPAFI  385 (448)
T ss_pred             HHHHHHHH
Confidence            98877653

>TIGR00896 CynX cyanate transporter

Probab=99.06  E-value=9.9e-09  Score=90.65  Aligned_cols=146  Identities=14%  Similarity=0.077  Sum_probs=103.6

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-CcchhhhHH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLP   87 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-Grk~~l~~~   87 (357)
                      .++...+..++...........+|.+.++        .+.+..+.|...+...++..++.++.|++.||+ +||+.+..+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--------~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~  269 (355)
T TIGR00896       198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS--------HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVL  269 (355)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHH
Confidence            34444444444445555556677888764        234456678999999999999999999999999 566677777


Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCC-ccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      ..+..++...+.+.++.   ... ..-++.|+ +.+...+...+.+.+..+ +++++...++.+....+|..+||.+.|.
T Consensus       270 ~~~~~~~~~~~~~~~~~---~~~-~~~~l~g~-~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~  344 (355)
T TIGR00896       270 AVLQLVGLCGLLFAPMH---GLW-AWALVLGL-GQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV  344 (355)
T ss_pred             HHHHHHHHHHHHHhhhh---HHH-HHHHHHHH-hhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777766666542   111 13456788 667777777777765554 5677888998888888888999998887


Q ss_pred             h
Q 018388          167 L  167 (357)
Q Consensus       167 l  167 (357)
                      +
T Consensus       345 l  345 (355)
T TIGR00896       345 L  345 (355)
T ss_pred             H
Confidence            6

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.05  E-value=2.2e-08  Score=91.69  Aligned_cols=175  Identities=15%  Similarity=0.144  Sum_probs=125.0

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhh----hhhh-cCcchhh-
Q 018388           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGN----LSDQ-YGRKAML-   84 (357)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~----l~dr-~Grk~~l-   84 (357)
                      ..+++...+....+.-..+.++.+.++..+.+...++++   .+++.++..+...+.+|+..+    +.|| .+++... 
T Consensus       275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip---~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k  351 (475)
T TIGR00924       275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVP---VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLK  351 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEEC---HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHH
Confidence            344444555555555556667877776543332333433   478888888888888888664    4444 3333433 


Q ss_pred             -hHHHHHHHHHHHHHHH---------ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHH
Q 018388           85 -TLPLTLSIIPLAILAY---------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLS  154 (357)
Q Consensus        85 -~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  154 (357)
                       .++.++.+++....++         ..|   ++++.+..++.++ +.....|...+++.+..|++.|++.+|.+.....
T Consensus       352 ~~~G~~l~~~~~~~~~~~~~~~~~~~~~s---~~~~i~~~~~~~~-ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~  427 (475)
T TIGR00924       352 FTLGMLFCGASFLTFAASIWFADAGGLTS---PWFMVLIYLFQTL-GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQA  427 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCccC---HHHHHHHHHHHHH-HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence             6778887777777664         235   7888999999999 8899999999999999999999999999999999


Q ss_pred             HHHHhhHhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhcc
Q 018388          155 ASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLK  192 (357)
Q Consensus       155 ~g~~~g~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~  192 (357)
                      +|..+++.++...    +|...|...++..++..++.++..|
T Consensus       428 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       428 MGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998887764    5677777776665555555444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.05  E-value=5.1e-09  Score=93.10  Aligned_cols=150  Identities=12%  Similarity=-0.016  Sum_probs=99.1

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCc-chhhhH-
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAMLTL-   86 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Gr-k~~l~~-   86 (357)
                      .++.+.+..+.............|.+.++       +.+.+..+.++..+...++..++.++.|+++||.++ |+.... 
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~  289 (379)
T TIGR00881       217 VLWYISLGYVFVYVVRTGILDWSPLYLTQ-------EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAV  289 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHH
Confidence            34445555566666666666777888765       234455667888899999999999999999998643 333222 


Q ss_pred             HH-HHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhH
Q 018388           87 PL-TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (357)
Q Consensus        87 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  165 (357)
                      .. ....++.......+... .+...+..++.|+ ......+....+..|..|+++|+++.++.+....+|..++|.+.|
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g  367 (379)
T TIGR00881       290 FFMALIIVSLLVYWLNPAAN-PLMDLICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLG  367 (379)
T ss_pred             HHHHHHHHHHHHHhcCcchh-HHHHHHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHH
Confidence            11 11122222222211111 3445556666676 333333556778899999999999999999999999999998888


Q ss_pred             Hh
Q 018388          166 FL  167 (357)
Q Consensus       166 ~l  167 (357)
                      .+
T Consensus       368 ~l  369 (379)
T TIGR00881       368 YL  369 (379)
T ss_pred             HH
Confidence            76

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.04  E-value=2.5e-08  Score=89.07  Aligned_cols=145  Identities=12%  Similarity=0.082  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHH
Q 018388           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (357)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~   90 (357)
                      +...+................|.+.++       +.+.+..+.|++.+...++..++.++.|++.||+|||+.+..+..+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~  281 (385)
T TIGR00710       209 WGYALIYGASFGGFFAFFSGAPFVYID-------IMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLIL  281 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            333333333333444445556766654       2344556678888999999999999999999999999998888777


Q ss_pred             HHHHHHHHHHccc--hhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHH-HHHHhhHhhh
Q 018388           91 SIIPLAILAYRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLS-ASFVCGTLAA  164 (357)
Q Consensus        91 ~~~~~~~~~~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~-~g~~~g~~~~  164 (357)
                      ..++..+......  ......+....++.|+ +.+...+.......|..| ++|+++.+..+.... .|.+.+|.++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       282 FAVSAVLLEITAILGLGSWAMIIGPMMFVGI-GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777666554321  0113444556677777 556666778888888776 688999998876654 4566666655

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.03  E-value=2.9e-08  Score=85.62  Aligned_cols=156  Identities=12%  Similarity=0.014  Sum_probs=111.5

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      .++...+..|+.......+....+.|+++     ....+.+..+.++..+.+..+..++.+..+++.||+|+|+.+..+.
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~-----~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~  215 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSD-----PHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNA  215 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            44444455555444555666677888864     1235667788899999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-
Q 018388           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (357)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-  167 (357)
                      .+..++.++....++   ... ...-++.|+ +.+..+|...+...+..|+ +.+++.++. ....+|..++|.+.|.+ 
T Consensus       216 ~l~~~~~~l~~~~~~---~~~-~~~~~l~g~-~~s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~la  288 (310)
T TIGR01272       216 FLAVLLSIGAALTHG---YVA-MWFVLALGL-FNSIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLA  288 (310)
T ss_pred             HHHHHHHHHHHHcCC---HHH-HHHHHHHHH-HHHHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence            887777766655554   222 224446787 6677789989998888774 345666665 56678889999877776 


Q ss_pred             ---hhHHHHHHH
Q 018388          168 ---STTSAFQAA  176 (357)
Q Consensus       168 ---~~~~~f~~~  176 (357)
                         +.+..|++.
T Consensus       289 d~~g~~~a~~v~  300 (310)
T TIGR01272       289 DCLGIQLAFALP  300 (310)
T ss_pred             HhccchHHHHHH
Confidence               445666544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.03  E-value=5e-09  Score=95.64  Aligned_cols=172  Identities=18%  Similarity=0.271  Sum_probs=140.6

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC--cchhhh
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG--RKAMLT   85 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~G--rk~~l~   85 (357)
                      +.+..+.+...+..++.......+|.+.++        .+.+..+.+.+.++..+...++.+..|+++|+..  ++....
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~--------~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~  369 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKS--------LGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFL  369 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHH
Confidence            456677777788888888888888888763        3444566788899999999999999999999988  445566


Q ss_pred             HHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhH
Q 018388           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  165 (357)
                      ++.+..+++...+.++++   ++.+.....+.|+ +.|.........+.|..+.++-+.+.|+.....+++.++||.++|
T Consensus       370 ~~ll~~gl~~~~~p~~~~---~~~l~~~~~~fG~-~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag  445 (509)
T KOG2504|consen  370 LTLLIAGLARLFLPFATT---YVGLIVFSILFGF-CVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG  445 (509)
T ss_pred             HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence            788888888888999999   8889999999999 778876666678899999999999999999999999999999999


Q ss_pred             Hh-----hhHHHHHHHHHHHHHHHHHHHHhcc
Q 018388          166 FL-----STTSAFQAATIVSMLAAAYMRVFLK  192 (357)
Q Consensus       166 ~l-----~~~~~f~~~~~~~~~~~~~~~~~~~  192 (357)
                      ++     +|...|+..++..++...+ ++..|
T Consensus       446 ~~~d~tg~Y~~~f~~~g~~~~~s~~~-~~~~~  476 (509)
T KOG2504|consen  446 LLYDITGNYDHAFYFCGLCFLLSAVL-LLILR  476 (509)
T ss_pred             eeeeccCCeeeehhhcChHHHHHHHH-HHHhH
Confidence            76     4778888888776655544 33344

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.03  E-value=2.9e-08  Score=87.85  Aligned_cols=170  Identities=16%  Similarity=0.083  Sum_probs=106.2

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCc---chhh
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR---KAML   84 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Gr---k~~l   84 (357)
                      +.++.+.+..+............+|.++++.      .++.  . .+...++..+...++   .++++||..|   |+..
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~------g~s~--~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~  259 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRPA------GLED--I-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIY  259 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCh--H-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHH
Confidence            4456666667777677666677889998652      1121  1 244444444444444   4677777654   3333


Q ss_pred             hH-HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhh
Q 018388           85 TL-PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (357)
Q Consensus        85 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  163 (357)
                      .. ..+..++.........+   .+...+.-.+.++ ......+...++.+|.+|+|.|+++.|+.+....+|...+|.+
T Consensus       260 ~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~  335 (368)
T TIGR00903       260 IRAAALLIAAFFLALAFELN---RLALFAFIGIAGL-LMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALA  335 (368)
T ss_pred             HHHHHHHHHHHHHHHHHccc---cHHHHHHHHHHHH-hhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHH
Confidence            32 33334444444444444   3333344455555 4444556678899999999999999999999999999888877


Q ss_pred             hHHh--hhHHHHHHHHHHHHHHHHHHHHhccCC
Q 018388          164 ARFL--STTSAFQAATIVSMLAAAYMRVFLKDD  194 (357)
Q Consensus       164 ~~~l--~~~~~f~~~~~~~~~~~~~~~~~~~e~  194 (357)
                      .+.+  +-+..|.+.++..++..+... .++++
T Consensus       336 ~~~~~~~~~~~f~~~~~~~~i~~~~~~-~~~~~  367 (368)
T TIGR00903       336 AMLFISSAEAYFTFLAILITIAFAIAL-LLPND  367 (368)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHH-hCCCC
Confidence            7654  566777777777666655543 33543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.02  E-value=1.7e-08  Score=91.51  Aligned_cols=149  Identities=18%  Similarity=0.192  Sum_probs=122.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      +|.+..+....++..++..+.....+.+.++..+.+        ...+....+..++..++.+++++++||+|+|+.+..
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~--------~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~  295 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE--------GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII  295 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence            466777888888888888888888888888754322        234666778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcc--chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCcc-------chhHHHHHHHHHHHHHH
Q 018388           87 PLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER-------QRASAFGILLGVLSASF  157 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~  157 (357)
                      +.++.+++.++..+.+  +   .+.+++..++.|+ +.+...+...++++|..+.+       +.|...+..+...-+|.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~---~~~~~i~~~l~gi-~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~  371 (428)
T PF13347_consen  296 GLLLAALGFLLLFFLGPGS---PWLVLILFILAGI-GYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQ  371 (428)
T ss_pred             hHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhHh-hhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHH
Confidence            9999999999888876  6   7888999999999 66777788999999998743       34677788888888888


Q ss_pred             HhhHhhhHHh
Q 018388          158 VCGTLAARFL  167 (357)
Q Consensus       158 ~~g~~~~~~l  167 (357)
                      .+++.+.+.+
T Consensus       372 ~la~~i~g~~  381 (428)
T PF13347_consen  372 GLAGAIVGLL  381 (428)
T ss_pred             HHHHHHHHHH
Confidence            8888776653

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.01  E-value=2.3e-08  Score=91.74  Aligned_cols=168  Identities=14%  Similarity=0.020  Sum_probs=107.0

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh--
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT--   85 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~--   85 (357)
                      +.++...+..+............+|.|+++.       .+.+..+.|+..++..++..++.++.|+++||+++|+...  
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~  333 (465)
T TIGR00894       261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWV-------LRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLT  333 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence            3455666666667677777777889888763       3445566789999999999999999999999987654321  


Q ss_pred             ------HHHHHH--HHHHHHHHH-ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHH
Q 018388           86 ------LPLTLS--IIPLAILAY-RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (357)
Q Consensus        86 ------~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  156 (357)
                            .+....  .+....... ..+   .+..++.-.+.+. ..+...+.......|..| +.++.++++.+....+|
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~  408 (465)
T TIGR00894       334 AARKIFNGIGGLGPGIFAYALPYLSAA---FYLTIIILTLANA-VSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIG  408 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHHHHH-HhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHH
Confidence                  111111  111111112 222   3333333334343 333333444445556666 58999999999999999


Q ss_pred             HHhhHhhhHHh-------hhHHHHHHHHHHHHHHHHHH
Q 018388          157 FVCGTLAARFL-------STTSAFQAATIVSMLAAAYM  187 (357)
Q Consensus       157 ~~~g~~~~~~l-------~~~~~f~~~~~~~~~~~~~~  187 (357)
                      ..++|.+.+.+       +|+..|.+.++..++..+..
T Consensus       409 ~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~  446 (465)
T TIGR00894       409 GLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY  446 (465)
T ss_pred             HHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence            99999888764       37788888877766655443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.01  E-value=2.9e-08  Score=89.07  Aligned_cols=175  Identities=13%  Similarity=0.033  Sum_probs=104.1

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      ++.+.+.+..+..+-+.......+|.+.++..+    +  .+   ......+..+...+..|++|+++||+|+|+++..+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~----~--~~---~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~  322 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP----D--VN---ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLIN  322 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----h--HH---HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHH
Confidence            345555555555544444455577888765321    1  11   12222345677888899999999999999999988


Q ss_pred             HHHHHHHHHHHH-Hccc--hhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCc---------------------cchh
Q 018388           88 LTLSIIPLAILA-YRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE---------------------RQRA  143 (357)
Q Consensus        88 ~~~~~~~~~~~~-~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~---------------------~~r~  143 (357)
                      .+...+...... ..+.  ...++.+.+..+...+ +.|.-....+.++.+.+|+                     ++-|
T Consensus       323 ~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~-~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g  401 (462)
T PRK15034        323 FIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFL-TAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETA  401 (462)
T ss_pred             HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH-HhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHH
Confidence            876666653322 2221  0114444443333333 2233334566667666663                     1445


Q ss_pred             HHHHHHHHHHHHHHHhhHhhhHHh-----hhHHHHHHHHHHHHHHHHHHHHhcc
Q 018388          144 SAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLK  192 (357)
Q Consensus       144 ~~~~~~~~~~~~g~~~g~~~~~~l-----~~~~~f~~~~~~~~~~~~~~~~~~~  192 (357)
                      .+.|+.+....+|..+-|.+-+..     ++...|+...+..+++..+.|.+.-
T Consensus       402 ~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~  455 (462)
T PRK15034        402 AALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG  455 (462)
T ss_pred             HHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            677888888888777777554443     3566777777777777777666543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.00  E-value=6.7e-08  Score=86.59  Aligned_cols=138  Identities=12%  Similarity=-0.127  Sum_probs=84.5

Q ss_pred             HhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHH
Q 018388           28 VPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFF  107 (357)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~  107 (357)
                      ....|.+.++       +.+.+..+.|...+...++..++.++.|++.||+|||+.+..+..+..++.....+.++   .
T Consensus       223 ~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~  292 (392)
T PRK10473        223 VNTSPVLLME-------QMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS---H  292 (392)
T ss_pred             HHhCHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            3444555544       23444556788888899999999999999999999999999998888888877777665   3


Q ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHhhCCCccch-hHHHHHHHHHHHHHHHhhHhhhHHhhhHHHHHHHHH
Q 018388          108 YAYYALRTLTAMVCEGSINCLALAYVADNISERQR-ASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATI  178 (357)
Q Consensus       108 ~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r-~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~f~~~~~  178 (357)
                      +.....-.+.+. +.+...+.  ....+..|.++| +.+.+.......+|..+++.+.+.+++.....+.+.
T Consensus       293 ~~~~~~~~l~~~-g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        293 AVSLFGITLICA-GFSVGFGV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI  361 (392)
T ss_pred             HHHHHHHHHHHH-HHHHHhHH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            322333333333 21222222  233344454444 445555555555666666666666666544444433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.98  E-value=3.7e-08  Score=80.29  Aligned_cols=148  Identities=17%  Similarity=0.208  Sum_probs=110.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      +..++.+....++......=....-|.+.++       .+++|+...|-+.+.......+.+|+.|.++||+|++..++.
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~-------rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~  335 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQK-------RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVA  335 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHH-------hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHH
Confidence            4557777777666666655445555666554       567777777888888888889999999999999999998887


Q ss_pred             HHHH-HHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhH
Q 018388           87 PLTL-SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (357)
Q Consensus        87 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  165 (357)
                      +..+ ..++.....++.     +.=+.+..+.|+ +....-......++..+|+++.|++.+..+...++|..+.|+++|
T Consensus       336 ~a~~~tl~~H~~l~Ft~-----lsPy~~m~~lGL-sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag  409 (459)
T KOG4686|consen  336 SACILTLLGHSGLFFTF-----LSPYTSMTFLGL-SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAG  409 (459)
T ss_pred             HHHHHHHHHhhhHHhhh-----ccHHHHHHHHhh-hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhh
Confidence            6554 444555544432     222466777788 655554446678889999999999999999999999999999999


Q ss_pred             Hh
Q 018388          166 FL  167 (357)
Q Consensus       166 ~l  167 (357)
                      .+
T Consensus       410 ~i  411 (459)
T KOG4686|consen  410 FI  411 (459)
T ss_pred             ee
Confidence            86

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.94  E-value=6.7e-08  Score=86.65  Aligned_cols=148  Identities=10%  Similarity=-0.003  Sum_probs=98.1

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH-HHHHHH
Q 018388           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT-LSIIPL   95 (357)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~-~~~~~~   95 (357)
                      .+....+........+.+.++.       .+.+..+.|+......++..+++.+.+++.||++++........ ...+..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  288 (394)
T PRK11652        216 LIGTLAGIAVFEACSGVLMGAV-------LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLM  288 (394)
T ss_pred             HHHHHHHHHHHHHhChHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444556666542       33445567888888889999999999999999984333222222 222222


Q ss_pred             HHHHH--ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHhhhHHHH
Q 018388           96 AILAY--RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAF  173 (357)
Q Consensus        96 ~~~~~--~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~f  173 (357)
                      .....  ..+   .+.+....++.|+ +.+...|...++..|..| +++++..++.+....+|..+|+.+++.+..+..+
T Consensus       289 ~~~~~~~~~~---~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~  363 (394)
T PRK11652        289 WIPGWFGVMN---VWTLLVPAALFFF-GAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTGQF  363 (394)
T ss_pred             HHHHHhcccc---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence            22222  123   4566777788888 667777888998888887 6789999999999999999999999887544434


Q ss_pred             HHH
Q 018388          174 QAA  176 (357)
Q Consensus       174 ~~~  176 (357)
                      ...
T Consensus       364 ~~~  366 (394)
T PRK11652        364 SLG  366 (394)
T ss_pred             HHH
Confidence            433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.92  E-value=2e-08  Score=92.22  Aligned_cols=151  Identities=13%  Similarity=0.116  Sum_probs=103.5

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      +|.+..+....++............+.+.+...       + +....+++.+...++..++.+++++++||+|+|+.+..
T Consensus       230 n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~-------~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~  301 (473)
T PRK10429        230 NDQLSCLLGMALAYNIASNIINGFAIYYFTYVI-------G-DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAG  301 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhheeeEEEEEC-------C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence            345555666666666666666555555543221       1 12344666677778889999999999999999999988


Q ss_pred             HHHHHHHHHHHHHH---ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCc-------cchhHHHHHHHHHHHHH
Q 018388           87 PLTLSIIPLAILAY---RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-------RQRASAFGILLGVLSAS  156 (357)
Q Consensus        87 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g  156 (357)
                      +..+..++.+....   .++ ...+.+++.-++.|+ +.+...+...++++|..+.       ++.|...+......-+|
T Consensus       302 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~l~g~-~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~  379 (473)
T PRK10429        302 ASIFPVLSCGVLLLMGLAAP-HNALLIVIAGILLNI-GTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGG  379 (473)
T ss_pred             HHHHHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHH
Confidence            88776666555433   121 115556667777887 6667778889999999763       22345788888888899


Q ss_pred             HHhhHhhhHHh
Q 018388          157 FVCGTLAARFL  167 (357)
Q Consensus       157 ~~~g~~~~~~l  167 (357)
                      ..+|+.+.|.+
T Consensus       380 ~al~~~i~g~~  390 (473)
T PRK10429        380 SAFAAFFIGVV  390 (473)
T ss_pred             HHHHHHHHHHH
Confidence            99998887764

>PRK10133 L-fucose transporter; Provisional

Probab=98.91  E-value=1.1e-07  Score=86.25  Aligned_cols=128  Identities=8%  Similarity=-0.082  Sum_probs=95.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccch
Q 018388           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS  124 (357)
Q Consensus        45 ~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~  124 (357)
                      ..+.+....|+....+.++..++.++.|++.||+|||+++..+.++..+...+..+.++   .+ .+..-.+.|+ +.+.
T Consensus       289 ~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~---~~-~~~~~~l~gl-g~~~  363 (438)
T PRK10133        289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG---HV-GLIALTLCSA-FMSI  363 (438)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC---hH-HHHHHHHHHH-HHHH
Confidence            45677788899999999999999999999999999999999888877777666666555   22 2345567788 6788


Q ss_pred             HHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----h-hHHHHHHHHHH
Q 018388          125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----S-TTSAFQAATIV  179 (357)
Q Consensus       125 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~-~~~~f~~~~~~  179 (357)
                      ..|..++...|..|+ +.+.+.++... ...|..++|.+.|.+    | -|..|++..+.
T Consensus       364 i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~  421 (438)
T PRK10133        364 QYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALC  421 (438)
T ss_pred             HHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            889999999998764 45677777754 445677777777765    3 35556554443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.88  E-value=2e-07  Score=80.12  Aligned_cols=160  Identities=23%  Similarity=0.289  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHH
Q 018388           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (357)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~   92 (357)
                      .....+....+.....+..+.+..+......     . ...++..+.+.+...++.++.|.++||+|||+.+..+.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~   80 (338)
T COG0477           7 LALAALLLGLDLGLLSPALPLLLSTLSLSSG-----R-LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFL   80 (338)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHcCCCch-----h-HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHH
Confidence            3444455556666767777777765311110     0 356888899999999999999999999999988888877655


Q ss_pred             HHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCc-cchhHHHHHHHH-HHHHHHHhhHhhhHHh---
Q 018388           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLG-VLSASFVCGTLAARFL---  167 (357)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~~g~~~~~~l---  167 (357)
                      .+.+...+..+ ...+.+.+.|+.+|+ +.+...+...+++.|..|+ ++|+...+.... ...+|..++|.+++.+   
T Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          81 LGTLLLALAPN-VGLALLLILRLLQGL-GGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHhCcc-chHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666654 337888999999999 6677888999999999997 688998888888 5888888888777654   


Q ss_pred             ---hhHHHHHHHHHHH
Q 018388          168 ---STTSAFQAATIVS  180 (357)
Q Consensus       168 ---~~~~~f~~~~~~~  180 (357)
                         +||+.|.......
T Consensus       159 ~~~~~~~~~~~~~~~~  174 (338)
T COG0477         159 LLWGWRAAFLLAALLG  174 (338)
T ss_pred             HhcchHHHHHHHHHHH
Confidence               5888666665553

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.88  E-value=1.7e-07  Score=76.99  Aligned_cols=119  Identities=18%  Similarity=0.120  Sum_probs=89.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccch----hHHHHHHHHHHHhhhc
Q 018388           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI----SFFYAYYALRTLTAMV  120 (357)
Q Consensus        45 ~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~~  120 (357)
                      .++.+..+...+.+...+|..+ +++.|.+.||+|+|.++.++.+...++..+...+-+.    ..+|.+.+..++.|. 
T Consensus        31 ~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~-  108 (250)
T PF06813_consen   31 RLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGN-  108 (250)
T ss_pred             HhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcc-
Confidence            3445555667777778888775 5889999999999999999999999998887765211    226777777777776 


Q ss_pred             ccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388          121 CEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus       121 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      +.+...+++.....+.+| ++||++.|+.-...+++..+-..+...
T Consensus       109 s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~  153 (250)
T PF06813_consen  109 SSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSA  153 (250)
T ss_pred             cHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHH
Confidence            555555666666678887 689999999999999987665544433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.88  E-value=7.5e-08  Score=88.37  Aligned_cols=164  Identities=17%  Similarity=0.203  Sum_probs=112.8

Q ss_pred             HHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchh-------hhHHHHHHHHH
Q 018388           22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM-------LTLPLTLSIIP   94 (357)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~-------l~~~~~~~~~~   94 (357)
                      ....-....++.+.++..+.....+.+.   .+++++...+...+.+|+.+++.||.|+|+.       +.++.++.+++
T Consensus       283 ~~~~q~~~~l~l~~~~~~~~~~~G~~i~---~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~  359 (489)
T PRK10207        283 ILYAQMPTSLNFFAINNVHHEILGFSIN---PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLG  359 (489)
T ss_pred             HHHHHcccHHHHHHHHhccccccceEEC---HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence            3333334566777765332222222232   2566667777888999999999999999974       66777776666


Q ss_pred             HHHHH-----Hccc--hhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           95 LAILA-----YRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        95 ~~~~~-----~~~~--~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      .+..+     .+..  ....+++....++.|+ +.+...|...+++.+..|++.++.+++.+.....+|..+|..+++..
T Consensus       360 ~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~-Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        360 FLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL-GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            54321     2211  1225677788999999 88999999999999999999999999999999999999998887543


Q ss_pred             --------------hhHHHHHHHHHHHHHHHHHHHH
Q 018388          168 --------------STTSAFQAATIVSMLAAAYMRV  189 (357)
Q Consensus       168 --------------~~~~~f~~~~~~~~~~~~~~~~  189 (357)
                                    ...+.|...++..++..++.+.
T Consensus       439 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~  474 (489)
T PRK10207        439 AVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL  474 (489)
T ss_pred             ccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                          1345566666555544444433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.87  E-value=1.6e-06  Score=81.77  Aligned_cols=137  Identities=18%  Similarity=0.138  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhh-cCcchhhhHHHHHHHHHHHHHHHccch-----hHHHHHHHHHHHhhhcccch
Q 018388           51 YLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRSI-----SFFYAYYALRTLTAMVCEGS  124 (357)
Q Consensus        51 ~~~g~~~~~~~~~~~i~~~~~G~l~dr-~Grk~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~~~  124 (357)
                      .....+...+....-+...++|.++|+ +||++.+.++.++..++..+.+++...     ......+++-.+.++ |.|.
T Consensus        23 ~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~-G~Gg  101 (654)
T TIGR00926        23 STSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL-GTGG  101 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh-hccc
Confidence            334445555566666788889999996 699999999999999998888775321     112234455555555 6677


Q ss_pred             HHHHHHHHHhhCCCccc---hhHHHHHHHHHHHHHHHhhHhhhHHh-----------hhHHHHHHHHHHHHHHHHHHH
Q 018388          125 INCLALAYVADNISERQ---RASAFGILLGVLSASFVCGTLAARFL-----------STTSAFQAATIVSMLAAAYMR  188 (357)
Q Consensus       125 ~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~~g~~~~~~l-----------~~~~~f~~~~~~~~~~~~~~~  188 (357)
                      .-|...+...|.+++++   |.+...++..+.++|..+++.+..++           +|...|.+.++..++.++...
T Consensus       102 iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       102 IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence            77899999999987543   56678888888899999888776654           377788888777666555433

>PRK09669 putative symporter YagG; Provisional

Probab=98.86  E-value=1e-07  Score=86.83  Aligned_cols=151  Identities=13%  Similarity=0.075  Sum_probs=99.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.+..+....++...+........+.+.++..+  .      ....+.+.....+...++.+++++++||+|+|+.+..
T Consensus       228 n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~--~------~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~  299 (444)
T PRK09669        228 NSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL--R------PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKW  299 (444)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC--C------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            3445555555555555555544444444433221  1      1123455556677788889999999999999999988


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccc-------hhHHHHHHHHHHHHHHHh
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ-------RASAFGILLGVLSASFVC  159 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~-------r~~~~~~~~~~~~~g~~~  159 (357)
                      +.+...+......+.+. +..+.+++..++.|+ +.+...+...++++|..+.+|       .|...+..+....+|..+
T Consensus       300 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~g~-~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~al  377 (444)
T PRK09669        300 TIVAFVILSALIFFIPP-SNVWLIFALNILFNF-IQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAI  377 (444)
T ss_pred             HHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHH
Confidence            87766554433333221 115666777888898 667777899999999886322       345678888888999999


Q ss_pred             hHhhhHHh
Q 018388          160 GTLAARFL  167 (357)
Q Consensus       160 g~~~~~~l  167 (357)
                      |+.+++.+
T Consensus       378 g~~i~g~l  385 (444)
T PRK09669        378 GGAVVGWI  385 (444)
T ss_pred             HHHHHHHH
Confidence            99888764

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.84  E-value=1.7e-07  Score=86.44  Aligned_cols=134  Identities=16%  Similarity=0.149  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHHhh----hhhhhhcCcchhhhHHHHHHHHHHHHHHHccch------hHHHHHHHHHHHhhhcccc
Q 018388           54 GFQQAIIGLGTLVMMPVI----GNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI------SFFYAYYALRTLTAMVCEG  123 (357)
Q Consensus        54 g~~~~~~~~~~~i~~~~~----G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~r~l~G~~~~~  123 (357)
                      ++..++..+...+..|+.    +++.||+++++.+.++.++.+++........++      ...+++...+++.|+ ++.
T Consensus       319 ~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~-ge~  397 (500)
T PRK09584        319 EQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSI-GEL  397 (500)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH-HHH
Confidence            666677776666776666    666666666677888899999888887666441      113578889999999 889


Q ss_pred             hHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh--------------hhHHHHHHHHHHHHHHHHHHH
Q 018388          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--------------STTSAFQAATIVSMLAAAYMR  188 (357)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--------------~~~~~f~~~~~~~~~~~~~~~  188 (357)
                      ...|...+++.+..|++.|++.+|.+.....+|..++..+.+..              +.++.|...++.+++..++.+
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~  476 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML  476 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888888887776665421              245677766666554443333

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.83  E-value=1.6e-06  Score=77.19  Aligned_cols=247  Identities=15%  Similarity=0.087  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhC
Q 018388           57 QAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADN  136 (357)
Q Consensus        57 ~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~  136 (357)
                      .++-.....++.++.+.+.|+.|+|..+.++..........+.+-++    +.++..-.+.|+ +.+..+...-.+++|.
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~----y~~yfssallG~-Gaallw~GqG~ylt~~  130 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNS----YYLYFSSALLGF-GAALLWTGQGGYLTSN  130 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcch----HHHHHHHHHhhh-hHHheecccceehhhc
Confidence            56667777888999999999999999999999999888877777665    567888899999 7788888888999999


Q ss_pred             CCccchhHHHHHHHHHHHHHHHhhHhhhHHh------------hhH-HH----------HHHHHHHHHHHHHHHHHhccC
Q 018388          137 ISERQRASAFGILLGVLSASFVCGTLAARFL------------STT-SA----------FQAATIVSMLAAAYMRVFLKD  193 (357)
Q Consensus       137 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l------------~~~-~~----------f~~~~~~~~~~~~~~~~~~~e  193 (357)
                      .++|++.+..++.......+.++|..+-..+            +.+ ..          ..+.+++..+..+...-...+
T Consensus       131 st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~  210 (461)
T KOG3098|consen  131 STRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFL  210 (461)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeec
Confidence            9999999999999999888888886554332            111 11          111111111111111111111


Q ss_pred             CCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhh
Q 018388          194 DVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFL  273 (357)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (357)
                      +.+.....                 .+    .. +....+.++...+.++ ++++..+....+..+..........|..+
T Consensus       211 p~~~~~~~-----------------~~----~~-~~~~~~~l~~~~~l~~-~~~ml~L~~~f~~tG~~~Sf~~~iypt~i  267 (461)
T KOG3098|consen  211 PSKDVVNC-----------------KS----SS-ETSFSELLKLTFKLLK-TPKMLLLFPFFFYTGLETSFWISIYPTCI  267 (461)
T ss_pred             Cccchhhh-----------------hh----hc-cccHHHHHHHHHHHhc-CHhHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            11110000                 00    00 0122223444444444 77777666666666555555566666544


Q ss_pred             hhh--cccCcc-hHHHHHHHHHHHHHHHHHHHHhhhhh---ccchhHHHHHHHHHHHHHHHHHHh
Q 018388          274 KAQ--FHFNKN-QFADLMLIAGLAGTISQLLFMPLLAP---ILGEAKLLSLGLFAACINMFICSI  332 (357)
Q Consensus       274 ~~~--~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~i~~~~~~~  332 (357)
                      .-.  .+.+.. ..+......+.+.++++ ...+.+.|   ++|+++.+.++..+..+++++...
T Consensus       268 ~ft~~~~~n~~~~~ai~~~~~g~g~v~~g-~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l  331 (461)
T KOG3098|consen  268 SFTRKLGSNTTYLIAIYSIGIGLGEVIGG-LDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHL  331 (461)
T ss_pred             hhhhhccCcchhHHHHHHHHHhHHHHHHH-HHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhc
Confidence            322  233322 24455555566666655 45555554   567888888888888888766554

>PRK11043 putative transporter; Provisional

Probab=98.80  E-value=6.3e-07  Score=80.58  Aligned_cols=130  Identities=12%  Similarity=0.040  Sum_probs=88.8

Q ss_pred             hHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHH---HH--c
Q 018388           27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL---AY--R  101 (357)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~---~~--~  101 (357)
                      .....|.+.++        .+.+..+.|+......++..++....+++.||+|+|+.+....+...++....   ..  .
T Consensus       222 ~~~~~p~~~~~--------~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (401)
T PRK11043        222 WLTGSPFILEQ--------MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSH  293 (401)
T ss_pred             HHHHhHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            33455666543        24445566777777888889999999999999999987665554444433322   22  2


Q ss_pred             cchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHhhh
Q 018388          102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST  169 (357)
Q Consensus       102 ~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  169 (357)
                      ++   .+..++...+.|+ +.+...+...+...|..| ++|+++.++.+.....+...++.+.+.+.+
T Consensus       294 ~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        294 PS---LVPLLIPFCVMAA-ANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             Cc---HHHHHHHHHHHHH-HHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            23   4444555566676 556666777777777765 689999999998877777788777776643

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.79  E-value=8.7e-08  Score=84.95  Aligned_cols=163  Identities=17%  Similarity=0.203  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHH
Q 018388           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (357)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~   91 (357)
                      .+++...+.+++.+.+...+-..++|.        +......|........+-++.-++.+++..|+|+-+++.+++.+.
T Consensus       375 lff~~av~mG~g~~lv~tFLfWHled~--------~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~  446 (618)
T KOG3762|consen  375 LFFFVAVVMGAGVGLVFTFLFWHLEDL--------GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACN  446 (618)
T ss_pred             ehhHHHHHHHHHHHHHHHHHHHHHhhc--------CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHH
Confidence            345556666777777777777777653        222344577777777888888889999999999999999999999


Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHH-HHHHHHhhHhhhHHh---
Q 018388           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV-LSASFVCGTLAARFL---  167 (357)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~~g~~~~~~l---  167 (357)
                      .+=.+..+...|   .|..+...+++|+ ..+.++.+..+|+++..||+.|..+.++.+.. .++|--+|.++||.+   
T Consensus       447 ~~Rf~~~S~L~n---~W~vLPieilqgi-t~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~  522 (618)
T KOG3762|consen  447 VGRFLYYSYLQN---PWMVLPIEILQGI-THALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER  522 (618)
T ss_pred             HHHHHHHHHhcC---chheeeHHHHHHH-HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee
Confidence            999999999999   8999999999999 88899999999999999999999999988554 477777777777775   


Q ss_pred             -hhHHHHHHHHHHHHHHHHH
Q 018388          168 -STTSAFQAATIVSMLAAAY  186 (357)
Q Consensus       168 -~~~~~f~~~~~~~~~~~~~  186 (357)
                       +-|..|.+.++.+++.+++
T Consensus       523 fg~~ttf~~~giAcl~~l~~  542 (618)
T KOG3762|consen  523 FGARTTFRIFGIACLVTLAL  542 (618)
T ss_pred             ehhHHHHHHHHHHHHHHHHH
Confidence             6688888887776655444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.76  E-value=1.2e-06  Score=74.37  Aligned_cols=168  Identities=17%  Similarity=0.122  Sum_probs=124.5

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-CcchhhhHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLPL   88 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-Grk~~l~~~~   88 (357)
                      -+.+.+..-+..+..+....-+|.+..|        .++|..+.|.+.+...+.+...++....+++|. ++|+..+...
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~--------~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~  281 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILID--------RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL  281 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHH--------cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            4555666666777778888889999874        467778889999999999999999999999975 5566777777


Q ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCc-cchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      ....++...+.+.+....+++    -++.|+ +.|..+|.+..++.+..++ ++-++-.++.+....+=...||.+.|++
T Consensus       282 ~~~l~G~~G~~~~P~~~~~lw----~~llG~-G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l  356 (395)
T COG2807         282 LLMLVGLVGLLLAPGQLPILW----ALLLGL-GQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFL  356 (395)
T ss_pred             HHHHHHHHHHHHhhhhHHHHH----HHHHhC-ccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence            788888888878776322222    488899 6677779999999888764 4444555555655555567789999987


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHh
Q 018388          168 -----STTSAFQAATIVSMLAAAYMRVF  190 (357)
Q Consensus       168 -----~~~~~f~~~~~~~~~~~~~~~~~  190 (357)
                           +|+.+....+...+...+..+..
T Consensus       357 hDa~gsw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         357 HDATGSWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             HHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence                 78888888777766665555443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.75  E-value=1.8e-06  Score=78.24  Aligned_cols=188  Identities=11%  Similarity=0.048  Sum_probs=135.9

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCcc----chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCc-ch
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE----CSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KA   82 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Gr-k~   82 (357)
                      +.++.+++.+++..++..-+.....++..+....++++    ++...-.-.+....+.+...+.++..-++.+|+|+ |+
T Consensus       258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~  337 (477)
T TIGR01301       258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKR  337 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            46788899999999999888877777777533322221    11111112355555666666788888999999995 77


Q ss_pred             hhhHHHHHHHHHHHHHHHccch------------------hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCcc--ch
Q 018388           83 MLTLPLTLSIIPLAILAYRRSI------------------SFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QR  142 (357)
Q Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~--~r  142 (357)
                      ....+.++.+++.....+.++.                  ...+..++.-.+.|+ ..+.....-++++++..+++  +.
T Consensus       338 ~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi-~~A~~~siPfal~s~~~~~~~~~~  416 (477)
T TIGR01301       338 LWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGI-PLAITYSIPFALASIRSSNLGAGQ  416 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhH-HHHHHHHHhHHHHHHHccccCCCC
Confidence            7789988888777766644320                  002556677788898 77777788999999999854  55


Q ss_pred             hHHHHHHHHHHHHHHHhhHhhhHHh------hhHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 018388          143 ASAFGILLGVLSASFVCGTLAARFL------STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (357)
Q Consensus       143 ~~~~~~~~~~~~~g~~~g~~~~~~l------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~  196 (357)
                      |..+|+.+.+..+.+++..+..|.+      +-.+.+.+.++..++..+..++.+|++++
T Consensus       417 G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       417 GLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            8999999999999998888766663      23567888888888888888888887654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00788 fbt folate/biopterin transporter

Probab=98.68  E-value=1.1e-07  Score=86.84  Aligned_cols=120  Identities=11%  Similarity=0.041  Sum_probs=99.1

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHc----------cchhHHHHHHHH
Q 018388           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR----------RSISFFYAYYAL  113 (357)
Q Consensus        44 ~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~  113 (357)
                      ...+.++...|+......++.+++....+++.+|++.|+.+.++.++..++.......          ++   .+.....
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~---~~~~~~~  357 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISD---EVFVLGD  357 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCC---eeeeeeh
Confidence            3567788888999999999999999999999999999999999999888877554311          22   3344555


Q ss_pred             HHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388          114 RTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus       114 r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      .++.++ +.+........++.+.+|+++++...++.....++|..+++.+++.+
T Consensus       358 ~~l~~~-~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l  410 (468)
T TIGR00788       358 SIIAEV-LAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLL  410 (468)
T ss_pred             hHHHHH-HHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777 55666677899999999999999999999999999999999888875

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.67  E-value=8.2e-07  Score=80.31  Aligned_cols=171  Identities=15%  Similarity=0.128  Sum_probs=120.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcc-----
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK-----   81 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk-----   81 (357)
                      .+.++.+++..+....+.......+|.|+++-+       +.+....|+..++..+...+...++|.++||.-+|     
T Consensus       257 s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL-------~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t  329 (466)
T KOG2532|consen  257 SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL-------GFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSET  329 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh-------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchH
Confidence            356889999999999999999999999998733       33345569999999999999999999999988552     


Q ss_pred             ---h-hhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHH
Q 018388           82 ---A-MLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF  157 (357)
Q Consensus        82 ---~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  157 (357)
                         | .-.++....++..+..++.++......+...-+..++ . |...+....-..|. .+++-+..+++.+....+..
T Consensus       330 ~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~-~-g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~  406 (466)
T KOG2532|consen  330 TVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGL-S-GFNISGFYKNHQDI-APQHAGFVMGIINFVGALAG  406 (466)
T ss_pred             hHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHH-c-ccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHH
Confidence               2 2224555555666666666542222222223332333 2 23322233333333 45788899999999999999


Q ss_pred             HhhHhhhHHh-------hhHHHHHHHHHHHHHHHHHH
Q 018388          158 VCGTLAARFL-------STTSAFQAATIVSMLAAAYM  187 (357)
Q Consensus       158 ~~g~~~~~~l-------~~~~~f~~~~~~~~~~~~~~  187 (357)
                      +++|.+.+.+       .||+.|++.+++.++..+..
T Consensus       407 ~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f  443 (466)
T KOG2532|consen  407 FIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIF  443 (466)
T ss_pred             HHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhe
Confidence            9999988775       69999999998877665443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.67  E-value=2.3e-07  Score=82.23  Aligned_cols=138  Identities=14%  Similarity=0.044  Sum_probs=87.1

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~   89 (357)
                      ++...+..+.............|.+.++.       ++.+..+.|+..+...+...++.++.|+++||+|||+.+..+..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~  299 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQ-------FGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFL  299 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHH
Confidence            34444444444444445556677787652       34445667888888899999999999999999999988887776


Q ss_pred             HHHHHHHHHHHccchh-HHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHH
Q 018388           90 LSIIPLAILAYRRSIS-FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (357)
Q Consensus        90 ~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  156 (357)
                      ....+..+..+..+.. ..+.....-.+.++ ..+...+...+++.|..| +++++..|+.+....+|
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       300 GVAMGAFLVVLGLVSPLSLAVFIVLFVALFF-FSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHhcCCCcchHHHHHHHHHHHHH-Hhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            6666555554432110 13332233222232 222233456667777776 69999999988776654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.67  E-value=1.5e-05  Score=69.96  Aligned_cols=134  Identities=12%  Similarity=0.043  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHH
Q 018388           53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY  132 (357)
Q Consensus        53 ~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~  132 (357)
                      .|.+.-+..+...+..+.+.+..+|...+.=...+.++..++.++.+++++   .+.-+++-.+.++ +.|.-......+
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~---v~~~l~Gv~las~-ssg~GE~tfL~l  136 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS---VWVRLLGVVLASL-SSGLGEVTFLSL  136 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc---hhHHHHHHHHHhh-hhhhhHHHHHHH
Confidence            356667777788888888999999988766667777788889889899888   7777888888888 666665555555


Q ss_pred             HhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH---h--hhHHHHHHHHHHHHHHHHHHHHhccCCC
Q 018388          133 VADNISERQRASAFGILLGVLSASFVCGTLAARF---L--STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (357)
Q Consensus       133 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~---l--~~~~~f~~~~~~~~~~~~~~~~~~~e~~  195 (357)
                      .. .+++    ...+-++.+.+.+.++|+..--.   .  +.|..+++...+.++..+..++.+|+++
T Consensus       137 t~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~  199 (402)
T PF02487_consen  137 TH-FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPP  199 (402)
T ss_pred             HH-hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            43 4543    34566666666666777643322   2  3477777777666555555555666543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.62  E-value=3.1e-06  Score=76.24  Aligned_cols=149  Identities=8%  Similarity=-0.007  Sum_probs=97.5

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      +.+....+..++...........++.+.++.. .+     .+....+...+.+.....++.+..|++.||+++|+.+.++
T Consensus       232 ~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~-~~-----~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~  305 (410)
T TIGR00885       232 RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLI-PG-----MTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAY  305 (410)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            34445555666655555455667777776421 01     1112223334444566678888899999999999999999


Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      .++..+..++....++   ... ...-.+.|+ ..+..+|..++...+..+++.+....++.. . .+|..++|.+.|.+
T Consensus       306 ~~~~~~~~ll~~~~~~---~~~-~~~l~~~gl-f~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~  378 (410)
T TIGR00885       306 AIIGMALCLGSIFAGG---HVG-LYCLTLCSA-FMSLMFPTIYGIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFI  378 (410)
T ss_pred             HHHHHHHHHHHHHcCC---hHH-HHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHH
Confidence            8888888888888776   333 344555566 445566999999999988655433333333 3 38999999988887


Q ss_pred             hh
Q 018388          168 ST  169 (357)
Q Consensus       168 ~~  169 (357)
                      ..
T Consensus       379 ~d  380 (410)
T TIGR00885       379 ID  380 (410)
T ss_pred             HH
Confidence            44

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.62  E-value=4.9e-07  Score=80.40  Aligned_cols=152  Identities=14%  Similarity=0.129  Sum_probs=113.1

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh
Q 018388            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (357)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~   85 (357)
                      ++|++..+++..++...+..+.......|.+..+       +.+....++.......+.+++.+++.++++|+|+|+++.
T Consensus       234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~l-------g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~  306 (467)
T COG2211         234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVL-------GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFL  306 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEc-------CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH
Confidence            3456666777777777788888888787765422       233344566666777787888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccc-------hhHHHHHHHHHHHHHHH
Q 018388           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ-------RASAFGILLGVLSASFV  158 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~-------r~~~~~~~~~~~~~g~~  158 (357)
                      .+.++..++.++..+.+ .+..+..++..++.++ +.+...+...++++|..+.+|       -|...+......=+|..
T Consensus       307 ~~~~~~~i~~~~~~f~~-~~~~~l~~~~~~i~~~-g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~a  384 (467)
T COG2211         307 IGLLLLAVGYLLLYFTP-AGSVVLIVVALIIAGV-GTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLA  384 (467)
T ss_pred             HHHHHHHHHHHHHHhhc-CcchHHHHHHHHHHHH-HhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence            99999999999998887 2226778888889888 667777889999998876322       24455666666677777


Q ss_pred             hhHhhhHH
Q 018388          159 CGTLAARF  166 (357)
Q Consensus       159 ~g~~~~~~  166 (357)
                      ++..+.++
T Consensus       385 la~~~~g~  392 (467)
T COG2211         385 LAGFIPGW  392 (467)
T ss_pred             HHHHHHHH
Confidence            77655554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.59  E-value=3.8e-07  Score=77.30  Aligned_cols=126  Identities=17%  Similarity=0.201  Sum_probs=94.7

Q ss_pred             HHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHH-HHHHHHHHHhhhcccchHHHHHHHHHhhCCCc
Q 018388           61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFF-YAYYALRTLTAMVCEGSINCLALAYVADNISE  139 (357)
Q Consensus        61 ~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~  139 (357)
                      .+.-.-|.++.+++.||+|||+.+..+.+++++..+....+.+...+ .+++.+|++...    ++ .+.+.|..|++|.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg----~f-qvaYvYtPEVyPT  465 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISG----AF-QVAYVYTPEVYPT  465 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhc----hh-eEEEEecCcccch
Confidence            44456677899999999999999999999999998887776543222 455667766443    33 4788899999999


Q ss_pred             cchhHHHHHHHHHHHHHHHhhHhhhHHh--hhHHHHHHHHHHHHHHHHHHHHhcc
Q 018388          140 RQRASAFGILLGVLSASFVCGTLAARFL--STTSAFQAATIVSMLAAAYMRVFLK  192 (357)
Q Consensus       140 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l--~~~~~f~~~~~~~~~~~~~~~~~~~  192 (357)
                      +-|+.+.|..+.+.-+|.++.|.++-..  .-..+..+.+.+.++..++..+ +|
T Consensus       466 avRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcf-fP  519 (528)
T KOG0253|consen  466 AVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCF-FP  519 (528)
T ss_pred             hhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHhee-ee
Confidence            9999999999999999999999998333  2234555555665666555544 45

>PRK11462 putative transporter; Provisional

Probab=98.58  E-value=1.9e-06  Score=78.78  Aligned_cols=150  Identities=11%  Similarity=0.035  Sum_probs=90.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      +|.+..+....++..............+.+...  +.+      ...+.+.+.+.++.+++.+++++++||+|+|+.+..
T Consensus       227 Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~--g~~------~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~  298 (460)
T PRK11462        227 NDQWRIVGLLTIFNILAVCVRGGAMMYYVTWIL--GTP------EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWW  298 (460)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhc--CCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence            344555555555666665555555555554422  111      122456677788889999999999999999998775


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCcc-----ch--hHHHHHHHHHHHHHHHh
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER-----QR--ASAFGILLGVLSASFVC  159 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~-----~r--~~~~~~~~~~~~~g~~~  159 (357)
                      +.....+...+..+.++.. ...+++.-++.|+ +.+...+...++++|..+.+     +|  +...+......-+|..+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~-~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~al  376 (460)
T PRK11462        299 TNALLAVISLAMFFVPMQA-SITMFVFIFVIGV-LHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAF  376 (460)
T ss_pred             HHHHHHHHHHHHHHhchhH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence            5554444333333333311 2233444456677 44555566677888877622     23  34456666777788888


Q ss_pred             hHhhhHH
Q 018388          160 GTLAARF  166 (357)
Q Consensus       160 g~~~~~~  166 (357)
                      |+.+++.
T Consensus       377 g~~i~g~  383 (460)
T PRK11462        377 GGALIGW  383 (460)
T ss_pred             HHHHHHH
Confidence            8777665

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.53  E-value=9.9e-06  Score=73.12  Aligned_cols=163  Identities=12%  Similarity=0.047  Sum_probs=95.5

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~   88 (357)
                      .++...+..++............|.+.++       ..+.+..+.|+.......+..+++...+++.+|.++++......
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~-------~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  291 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILID-------AGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAV  291 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence            34444444444444444555567888765       23455566788777778888888888888775555544433222


Q ss_pred             HHHHHHHHHHHH----ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh
Q 018388           89 TLSIIPLAILAY----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (357)
Q Consensus        89 ~~~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  164 (357)
                      .+..++..+...    .++  .++..++..++.++ +.+...|...+.. ....+..+|++.+..+.....+...++..+
T Consensus       292 ~~~~ig~~l~~~~~~~~~~--~~~~~~~~~~l~~~-G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~  367 (413)
T PRK15403        292 PIQLVGLALLIVGNLLWPH--VWLWSVLGTSLYAF-GIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIG  367 (413)
T ss_pred             HHHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHH-HHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            222233222221    222  13334567777777 5566656555432 222234578999998888888888888888


Q ss_pred             HHh---hhHHHHHHHHHHHHH
Q 018388          165 RFL---STTSAFQAATIVSML  182 (357)
Q Consensus       165 ~~l---~~~~~f~~~~~~~~~  182 (357)
                      +++   +-+++|...+++..+
T Consensus       368 g~~~~~~~~~~~~~~~~~~~~  388 (413)
T PRK15403        368 RWLWFNGGRLPFHLLAVVAGV  388 (413)
T ss_pred             HHHHHcCCchHHHHHHHHHHH
Confidence            876   335666655555443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.50  E-value=1.3e-06  Score=79.44  Aligned_cols=109  Identities=15%  Similarity=0.148  Sum_probs=85.3

Q ss_pred             ccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhcc-chhHHHHHHHHHH
Q 018388          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLSLGLFAA  323 (357)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~  323 (357)
                      ++.++..+...+...+.+++...++|.|+++.+|+++.+.+.+.........++. +++|++.||+ |||+.+..+.++.
T Consensus         8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~-ligG~LaDRilGrrr~iliG~il~   86 (493)
T PRK15462          8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTP-ILGGFLADKVLGNRMAVMLGALLM   86 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCcHHHHHHHHHHH
Confidence            5567777778888888999999999999998889999999999888888888877 8999999999 9999999999999


Q ss_pred             HHHHHHHHhcCc-chHHHH-HHHHHHhhhcccc
Q 018388          324 CINMFICSISWS-AWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       324 ~i~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~p  354 (357)
                      .++.+++....+ ....+. ..+..+|.|...|
T Consensus        87 ~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~  119 (493)
T PRK15462         87 AIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKS  119 (493)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHhcccccc
Confidence            998776665332 222232 2344455555544

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.49  E-value=1.1e-06  Score=58.13  Aligned_cols=71  Identities=21%  Similarity=0.234  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHH
Q 018388           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (357)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~   90 (357)
                      .+-...++...+.+...|.+|.+.+        +.+.+..++|.+.++..+...++.|++|.++||+++++..+.....
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~--------~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLK--------QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhh--------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            3445567777788888999999976        4577788999999999999999999999999999998887765543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.49  E-value=0.00023  Score=64.73  Aligned_cols=236  Identities=12%  Similarity=0.120  Sum_probs=142.7

Q ss_pred             HHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHc--c-------ch-------------h------HHHHHHHHHH
Q 018388           64 TLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR--R-------SI-------------S------FFYAYYALRT  115 (357)
Q Consensus        64 ~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~--~-------~~-------------~------~~~~~~~~r~  115 (357)
                      ..+......+++||++|.+++-.....+.....++++.  |       +.             .      ..|...+..+
T Consensus        72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv  151 (491)
T PF03219_consen   72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV  151 (491)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence            34556779999999999998887776666665555542  1       10             0      0133334444


Q ss_pred             HhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHhh-------------hHHHHH-HHHHH--
Q 018388          116 LTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS-------------TTSAFQ-AATIV--  179 (357)
Q Consensus       116 l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-------------~~~~f~-~~~~~--  179 (357)
                      ..-+.+.-...-.-..+..|.++.||-.|..++...+.++|.++++.+..++.             |..... ...++  
T Consensus       152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~  231 (491)
T PF03219_consen  152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLI  231 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHH
Confidence            44442212222245788999999999999999999999999998877665542             221111 11111  


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHH
Q 018388          180 SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG  259 (357)
Q Consensus       180 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (357)
                      +.+........+.+....++..                  .+...+++.++.+...++..+.+.++|.+..+.+....++
T Consensus       232 ~g~~i~~~~~~~~~~vl~~~~~------------------~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Yg  293 (491)
T PF03219_consen  232 LGIVIILLYRYMNKNVLTDPRF------------------YPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYG  293 (491)
T ss_pred             HHHHHHHHHHHHHHHccCcccc------------------chhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            1111122222333221111110                  0011112223344467777888888999999999888888


Q ss_pred             HhhhhhhHHHHHhhhhhcccCcch----HHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHH
Q 018388          260 LSEGGMQASFLYFLKAQFHFNKNQ----FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (357)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  319 (357)
                      .....+....-..+++.+. ++.+    .|......++...+.. ++++.+.+|+|-+....+.
T Consensus       294 i~inLvE~~wK~~lk~~~~-~~~~ysafmG~~~~~tGivtii~~-~l~~~iir~~GW~~~Alit  355 (491)
T PF03219_consen  294 ISINLVEVVWKSQLKQLYP-DPNDYSAFMGKFSSWTGIVTIIMM-FLSSNIIRRFGWRTAALIT  355 (491)
T ss_pred             HHHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHh
Confidence            8888887776666666543 3333    3555666777777777 7889999999987765554

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.46  E-value=1e-05  Score=61.43  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCC
Q 018388           58 AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI  137 (357)
Q Consensus        58 ~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~  137 (357)
                      ++......+.+++.+.+.++.|.|+.++++.+...+-.... +-++   .+.++.+-.+.|+ +.+..++..-.++.+..
T Consensus        44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~---~~~l~~~s~l~G~-~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPN---SYTLYPASALLGF-GAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhhh---HHHHHHHHHHHhh-hhHHhhHhhhHHHHHcC
Confidence            34455567777888899999999999999999887655444 3445   6788899999999 88999999999999999


Q ss_pred             CccchhHHHHHHHHHHHHHHHhhHhhh
Q 018388          138 SERQRASAFGILLGVLSASFVCGTLAA  164 (357)
Q Consensus       138 ~~~~r~~~~~~~~~~~~~g~~~g~~~~  164 (357)
                      ++++|++..++.......+.++|.++.
T Consensus       119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen  119 TEETIGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             CHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888888888887654

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.44  E-value=3.2e-05  Score=67.28  Aligned_cols=165  Identities=19%  Similarity=0.173  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hcCcchhhhHHHHHH
Q 018388           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-QYGRKAMLTLPLTLS   91 (357)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~d-r~Grk~~l~~~~~~~   91 (357)
                      .....++..++.++.-+++-+|-       .+-++.+..++.-+.+....+.+++-...|++.. |.++|+.-.+++...
T Consensus       213 f~~fl~l~t~a~~~QD~iLEPyg-------g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~  285 (403)
T PF03209_consen  213 FFVFLFLGTLAFFMQDVILEPYG-------GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLG  285 (403)
T ss_pred             HHHHHHHHHHHHHhhHHHcCCch-------hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            34444455555555545555553       3456777778888889999999999999998888 677788777888877


Q ss_pred             HHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----
Q 018388           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (357)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----  167 (357)
                      .++..+..++......+.+...-++.|+ +.|.+.....+...|..++++.|..+|.+.....++..+|..+++.+    
T Consensus       286 ~~~f~lii~a~~~~~~~~~~~~~~l~G~-g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  286 ALAFALIILAGPLGSPWLFRPGVFLLGL-GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHH-hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776665554322227888899999999 77888888999999999999999999999999999988888887763    


Q ss_pred             ----------hhHHHHHHHHHHHHHHHH
Q 018388          168 ----------STTSAFQAATIVSMLAAA  185 (357)
Q Consensus       168 ----------~~~~~f~~~~~~~~~~~~  185 (357)
                                +|..+|.+.++..++...
T Consensus       365 ~~~~~~~~~~aY~~VF~lEa~ll~~a~~  392 (403)
T PF03209_consen  365 RALFGNSPALAYGVVFALEAVLLLAALV  392 (403)
T ss_pred             HHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence                      345667777666444433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.39  E-value=2.7e-06  Score=56.63  Aligned_cols=76  Identities=20%  Similarity=0.277  Sum_probs=68.1

Q ss_pred             HHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHH
Q 018388           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA   99 (357)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~   99 (357)
                      .+++...+.|.+|.+.+        |.+++..+.|++.+...+|+.++++...++.++..+++.+..+.+...+....++
T Consensus         4 mGigRFayTplLP~M~~--------~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma   75 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQA--------DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA   75 (85)
T ss_pred             hhhHHHHHHhHhHHHHH--------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            35677888999999986        4466778889999999999999999999999998889999999999999999999


Q ss_pred             Hccc
Q 018388          100 YRRS  103 (357)
Q Consensus       100 ~~~~  103 (357)
                      +.++
T Consensus        76 ~~~~   79 (85)
T PF06779_consen   76 LTHS   79 (85)
T ss_pred             HHhc
Confidence            9988

Note that many members are hypothetical proteins.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=9.8e-07  Score=75.64  Aligned_cols=167  Identities=11%  Similarity=0.094  Sum_probs=115.1

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh--HH
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT--LP   87 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~--~~   87 (357)
                      +.......-....+..+.-|.++....|..+..  .     ++.|+..--..+.+.++..+.|.++||+++-+.+.  .+
T Consensus       272 I~~~agai~~~n~~lafLePtlslwm~e~m~~p--~-----w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~g  344 (464)
T KOG3764|consen  272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTP--G-----WEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGG  344 (464)
T ss_pred             HhhhhcchhhccchHHHhCcccHHHHHHhccCC--C-----cceeeeecccccchhccCchHHHHHHhcCchhHHHHHHH
Confidence            344444555566777788899999887744311  2     23455556668899999999999999999544333  45


Q ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCC---cc---chhHHHHHHHHHHHHHHHhhH
Q 018388           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS---ER---QRASAFGILLGVLSASFVCGT  161 (357)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~g~~~g~  161 (357)
                      ++...+.+....++++   +..+.+-++..++ +.+...+.........++   .+   -.|...++...++++|..+||
T Consensus       345 l~~~G~~~~~iP~~~~---~~~L~vp~~~l~~-~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP  420 (464)
T KOG3764|consen  345 LATVGVSSGPIPFATS---IAQLWVPNFGLGF-GIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGP  420 (464)
T ss_pred             HHHHHHHhchhHhhhh---HHHHhhhhHHHHH-HHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccc
Confidence            5555566666667788   7777777777777 545554444444444443   23   457889999999999999999


Q ss_pred             hhhHHh----hhHHHHHHHHHHHHHHHHHH
Q 018388          162 LAARFL----STTSAFQAATIVSMLAAAYM  187 (357)
Q Consensus       162 ~~~~~l----~~~~~f~~~~~~~~~~~~~~  187 (357)
                      .++|.+    |.+|.-.+.++..++...+.
T Consensus       421 ~~gg~iv~~iGF~wl~~iig~~n~iyapvl  450 (464)
T KOG3764|consen  421 TFGGSLVEAIGFEWLMTIIGILNLIYAPVL  450 (464)
T ss_pred             cccchheeehhHHHHHHHHHHHHHHHHHHH
Confidence            999986    77887777777766655443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.31  E-value=1.2e-05  Score=65.38  Aligned_cols=80  Identities=15%  Similarity=0.129  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHH
Q 018388           53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY  132 (357)
Q Consensus        53 ~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~  132 (357)
                      +|.+.....-..+++..+.|.++|+-|||+.-+.-++.+.+++ +.-.+++   +-.++++|.+-|+ +.+....+..++
T Consensus        74 IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpq---YkVLmVGR~LGGi-aTsLLFSaFEsW  148 (454)
T KOG4332|consen   74 IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQ---YKVLMVGRVLGGI-ATSLLFSAFESW  148 (454)
T ss_pred             cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCc---eEEEeehhhhhhH-HHHHHHHHHHHH
Confidence            3444444555667888899999999999997555444443333 2223455   7788999999999 666666666555


Q ss_pred             -HhhCC
Q 018388          133 -VADNI  137 (357)
Q Consensus       133 -i~~~~  137 (357)
                       ++|..
T Consensus       149 liaEHn  154 (454)
T KOG4332|consen  149 LIAEHN  154 (454)
T ss_pred             HHHHhh
Confidence             45655

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.27  E-value=5.2e-05  Score=64.01  Aligned_cols=267  Identities=15%  Similarity=0.059  Sum_probs=156.3

Q ss_pred             HHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccch
Q 018388           63 GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQR  142 (357)
Q Consensus        63 ~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r  142 (357)
                      .+.+.-.+.=.+.|..-.|++++.-.+.......+..+.++   .+.+-+.-+..|. ..+.. .+.++++-+.++++++
T Consensus        54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~s---V~~mQvlE~FyG~-~tAaE-IAYysYIYs~Vd~~~Y  128 (433)
T KOG3810|consen   54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPS---VKAMQVLEFFYGP-ATAAE-IAYYSYIYSKVDPEMY  128 (433)
T ss_pred             HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCC---chheeeehhhcCh-HHHHH-HhhhheeeeecCHHHH
Confidence            34555566667889998999999887777777888888888   7877888888898 54444 6889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhHhhhHHh---hh---HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccc
Q 018388          143 ASAFGILLGVLSASFVCGTLAARFL---ST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVN  216 (357)
Q Consensus       143 ~~~~~~~~~~~~~g~~~g~~~~~~l---~~---~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  216 (357)
                      .++.+...++.-.|...|..++..+   +|   ...=.+.... ........+++|..++..-.+.+.++..  ..+.  
T Consensus       129 qrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~-~~ia~~~A~fLP~v~rSl~f~~~~~~~~--v~~~--  203 (433)
T KOG3810|consen  129 KRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAE-VTIAVLLALFLPRVKRSLYFHRLEDKIS--VGDL--  203 (433)
T ss_pred             HHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHH-HHHHHHHHhhCCCCchhhhhhcccccce--eccc--
Confidence            9999999999999988888888775   22   2222222222 2222333455776653221110000000  0000  


Q ss_pred             cCCCCCCCCccccccchhHHH---HHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhc-ccCcchHHHHHHHHH
Q 018388          217 QNESNSPVKIPVCKKIPSIRD---LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF-HFNKNQFADLMLIAG  292 (357)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~  292 (357)
                        ++..++.+.....+..+..   -+....+||++....+=..+...++.-+.++....-++.. +-.....|..-++..
T Consensus       204 --e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~t  281 (433)
T KOG3810|consen  204 --EEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVST  281 (433)
T ss_pred             --hhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHH
Confidence              0000000000000011111   1222345777666665556666666666665555555441 111222466667777


Q ss_pred             HHHHHHHHHHHhhhhhccchh--HHHHHHHHHHHHHHHHHHhcCcchHHHHH
Q 018388          293 LAGTISQLLFMPLLAPILGEA--KLLSLGLFAACINMFICSISWSAWVPYAT  342 (357)
Q Consensus       293 ~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  342 (357)
                      ..++++. +..|++.-++.|.  .++..+....+...+.+..+.+.|..++.
T Consensus       282 lLGa~~~-~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~  332 (433)
T KOG3810|consen  282 LLGAIAA-LAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAG  332 (433)
T ss_pred             HHHHHHH-HHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhh
Confidence            7777777 7778876555543  34455555555556666667777776663

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.26  E-value=8.5e-06  Score=53.86  Aligned_cols=71  Identities=21%  Similarity=0.229  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHH
Q 018388          250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (357)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  322 (357)
                      ..-...++.....+....++|.|.++. |+|+.++|.+.++......++. .+.|.+.||.++++.+......
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~~-Gl~~~~iGil~~i~~~~~~~~~-pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQL-GLSPSQIGILSAIRPLIRFLAP-PLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhhc-CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCccHHHHHHHHH
Confidence            344567777788889999999999986 9999999999999999999988 7889999999998876655443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.26  E-value=5.9e-05  Score=69.88  Aligned_cols=149  Identities=17%  Similarity=0.121  Sum_probs=98.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCc-chhhh
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAMLT   85 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Gr-k~~l~   85 (357)
                      +|.+...++..++....+.......|.......+.+..  +.  ...++....+.++..++..+.|.+..+++| |..++
T Consensus       309 ~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~--~~--~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li  384 (599)
T PF06609_consen  309 RRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPI--SI--TEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLI  384 (599)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc--cc--ceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHH
Confidence            35566666677776666655556667665542211111  11  124677777788888999999999999888 55556


Q ss_pred             HHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhH
Q 018388           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  161 (357)
                      ++.++..++..+++..+..+ ....+..-++.|+ +.|...........-.+|+++-+.+.++....-.+|..+|.
T Consensus       385 ~~~~~~ta~~Gama~~~~~n-~~~~i~~~~l~g~-giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~  458 (599)
T PF06609_consen  385 FGSVLMTAFCGAMAAVRPDN-KNAAIAFLVLAGF-GIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGY  458 (599)
T ss_pred             HHHHHHHHHHHHHHHccCCC-cchHHHHHHHHHH-hHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHH
Confidence            77766666555554432111 3334566778888 55666556666667778999999999999888888877764

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.21  E-value=2.1e-06  Score=75.07  Aligned_cols=130  Identities=14%  Similarity=0.132  Sum_probs=92.5

Q ss_pred             HHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccc-hh----HHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCcc
Q 018388           66 VMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS-IS----FFYAYYALRTLTAMVCEGSINCLALAYVADNISER  140 (357)
Q Consensus        66 i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~  140 (357)
                      .+-.+...++|+.|||+..+.+.++..+..+..+...| ..    ......+..++.-+ +  .- .....+-+|.+|.+
T Consensus       363 PGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NF-G--Pn-~ttfivpaE~FPar  438 (538)
T KOG0252|consen  363 PGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNF-G--PN-ATTFIVPAEIFPAR  438 (538)
T ss_pred             CceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhc-C--CC-ceeEEeehhhchHH
Confidence            35667788999999999999999999998888887765 11    11222233333333 2  21 34556678999999


Q ss_pred             chhHHHHHHHHHHHHHHHhhHhhhHHh---------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 018388          141 QRASAFGILLGVLSASFVCGTLAARFL---------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (357)
Q Consensus       141 ~r~~~~~~~~~~~~~g~~~g~~~~~~l---------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~  200 (357)
                      -|+..-|+..+..-.|.++|...-.++         +.++.+++.+.+..+..+ ..+++||++.+..+
T Consensus       439 vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~-~T~l~pEtk~~~le  506 (538)
T KOG0252|consen  439 VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGIL-FTLLIPETKGKSLE  506 (538)
T ss_pred             HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHh-eeEEeecccccCHH
Confidence            999999999999999988887554443         568899999888665544 44568888765443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.15  E-value=5.3e-05  Score=70.47  Aligned_cols=181  Identities=15%  Similarity=0.095  Sum_probs=107.5

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      +.+....+..|....+........+.+.+..-   .+.-.      .....+..+...++..+...+.||+|||+.++.+
T Consensus       295 ~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g---~~~~~------~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s  365 (513)
T KOG0254|consen  295 RLIIGLLLQLFQQLTGINYVFYYSTTIFKSAG---LKSDT------FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFG  365 (513)
T ss_pred             HHHHHHHHHHHHHHhCCceEEeehHHHHHhcC---CCCch------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHh
Confidence            33444555555555666666667777766521   11110      2222333555566667779999999999999999


Q ss_pred             HHHHHHHHHHHHHccch-----------hHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHH
Q 018388           88 LTLSIIPLAILAYRRSI-----------SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (357)
Q Consensus        88 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  156 (357)
                      .....++.++.+.....           ........+-++..+ ..+.. +....+.+|.+|.+-|+++.++......+.
T Consensus       366 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f-~~g~g-~v~w~~~sEifp~~~r~~~~s~~~~~n~~~  443 (513)
T KOG0254|consen  366 AAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSF-AIGWG-PVPWVIVSEIFPLRLRSKGASLAVAVNWLW  443 (513)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHH-hcccc-cchhhhhhccCcHhHHhhhHHHHHHHHHHH
Confidence            99999888877754211           111222222223333 32322 555678899999999999988876666555


Q ss_pred             HHhhHhhh----HHhhhHHHHHHHHHHHHHHHH-HHHHhccCCCCCCC
Q 018388          157 FVCGTLAA----RFLSTTSAFQAATIVSMLAAA-YMRVFLKDDVPNDD  199 (357)
Q Consensus       157 ~~~g~~~~----~~l~~~~~f~~~~~~~~~~~~-~~~~~~~e~~~~~~  199 (357)
                      ..+-...-    ...++...|...+..+.+... ..++++||++....
T Consensus       444 ~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl  491 (513)
T KOG0254|consen  444 NFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTL  491 (513)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence            43322111    111224566666666566555 56778899876543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.13  E-value=0.00017  Score=64.15  Aligned_cols=283  Identities=12%  Similarity=0.052  Sum_probs=136.7

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hcCcchhhh
Q 018388           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-----QYGRKAMLT   85 (357)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~d-----r~Grk~~l~   85 (357)
                      ..+.+..++.++-.++....+|.++++.      .-+.|..+.|.. +.....+ =.-++|.++.|     |+||||..+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~------~~~~sy~q~~~f-Sla~~Pf-SlKlLWaPiVDs~y~~~~GRRKSWi   74 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSM------AKKVSYSQQAIF-SLASYPF-SLKLLWAPIVDSVYSKRIGRRKSWI   74 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccc------cCCCChhHheee-eeeechh-HHHHhhhhhhhhhcccccCCcchhh
Confidence            4556666777777777666778887651      112222333321 1111111 12346677766     789999888


Q ss_pred             HHH-HHHHHHHHHHHHcc----------c---------hhHH--HHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchh
Q 018388           86 LPL-TLSIIPLAILAYRR----------S---------ISFF--YAYYALRTLTAMVCEGSINCLALAYVADNISERQRA  143 (357)
Q Consensus        86 ~~~-~~~~~~~~~~~~~~----------~---------~~~~--~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~  143 (357)
                      +-. .+.++..+..+...          +         .+..  ..+....++.=+ .++....+...+.-...++|+++
T Consensus        75 iP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~f-l~ATQDIAVDGWALT~Ls~~n~~  153 (544)
T PF13000_consen   75 IPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVF-LCATQDIAVDGWALTMLSPENVG  153 (544)
T ss_pred             hHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHH-HHccCCceeehhhhhhcChhhcc
Confidence            654 23333333322211          0         0000  011122212222 22344455666666667788888


Q ss_pred             HHHHHHHHHHHHHHHhhHhhhHHhh-------h-H------------HHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 018388          144 SAFGILLGVLSASFVCGTLAARFLS-------T-T------------SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDL  203 (357)
Q Consensus       144 ~~~~~~~~~~~~g~~~g~~~~~~l~-------~-~------------~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~  203 (357)
                      .+......+.+.|..++-.+--.++       | |            .-..+.+.+.++.-++..++-+|.+..+... +
T Consensus       154 ~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~-~  232 (544)
T PF13000_consen  154 YASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLP-K  232 (544)
T ss_pred             hHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCc-c
Confidence            8777777777777666533221110       0 0            0111222232333344445455544322211 1


Q ss_pred             CcccccccccccccCCCCCCCCc-ccccc----chhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcc
Q 018388          204 TRPIITEETEGVNQNESNSPVKI-PVCKK----IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH  278 (357)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  278 (357)
                      .+..... +++.++...+.+..+ ...++    .+..+..++.+ |-|.+..+.+..+..-.++.........=+.|. |
T Consensus       233 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~il-kLp~V~~li~ilL~~KigF~a~da~T~LKLlEk-G  309 (544)
T PF13000_consen  233 IEPINKS-DGKSKEISIEYDESDVISTEEILSIKDVYKSLWKIL-KLPNVQTLIIILLTAKIGFQANDAVTSLKLLEK-G  309 (544)
T ss_pred             ccccccc-cccccccceecccccccchhhhhhHHHHHHHHHHHH-cCchHHHHHHHHHHHHhccccchhhhHHHHHHc-C
Confidence            0000000 000000000000000 01111    12233333333 478888888888888888888888888888887 9


Q ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHhhhh
Q 018388          279 FNKNQFADLMLIAGLAGTISQLLFMPLLA  307 (357)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  307 (357)
                      ++.++.+.+..+..-..++.. ...++..
T Consensus       310 ~~KE~LAl~~li~~P~qii~~-~~~~Kws  337 (544)
T PF13000_consen  310 LSKEDLALLVLIDFPFQIILP-YYIGKWS  337 (544)
T ss_pred             CCHHHhHHHHHHhhhHHHHHH-HHhhhhh
Confidence            999998877766655556655 4444443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.08  E-value=0.00022  Score=61.82  Aligned_cols=150  Identities=13%  Similarity=0.053  Sum_probs=113.4

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++++..-.+..|+..-........++.|.++.       .+.+..+.+...+.+..+.++|.....++..|+...|.+.+
T Consensus       235 ~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-------~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf  307 (422)
T COG0738         235 NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-------LGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAF  307 (422)
T ss_pred             ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            45666777788888777888888999998763       34445566788888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      ..++..+.++..++.++   .+.++ +-++.|+ ..+..+|...+...+..| ++ ...-|..-.+..+|..+-|.+.|+
T Consensus       308 ~a~~~ill~~~~~l~~g---~v~~~-~l~~ig~-F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~  380 (422)
T COG0738         308 YALIAILLLLAVALIGG---VVALY-ALFLIGL-FNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGV  380 (422)
T ss_pred             HHHHHHHHHHHHHHhcC---hHHHH-HHHHHHH-HhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHH
Confidence            99888888888888888   44333 3344566 445667999999999998 33 344444555567788888888888


Q ss_pred             hhhH
Q 018388          167 LSTT  170 (357)
Q Consensus       167 l~~~  170 (357)
                      +..+
T Consensus       381 i~d~  384 (422)
T COG0738         381 IADM  384 (422)
T ss_pred             HHHh
Confidence            7443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.07  E-value=0.00045  Score=59.32  Aligned_cols=261  Identities=12%  Similarity=0.034  Sum_probs=143.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hcCcc
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-----QYGRK   81 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~d-----r~Grk   81 (357)
                      ++++..+.+...+.++-.+... .+|.+++..        +.|....+....+ . --.-.-+.|.++.|     |+|||
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak--------~vSyt~~a~fS~a-y-~P~sLKllWaPiVDs~y~k~~Grr   98 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAK--------GVSYTSQAIFSFA-Y-WPFSLKLLWAPIVDSVYSKRFGRR   98 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCC--------Ccchhhhhhhhhh-h-hHHHHHHHHHhhhHHHHHHhhccc
Confidence            5667788888888888888888 889888631        1222222221111 1 11234568999999     99999


Q ss_pred             hhhhHHH-HHHHHHHHHHHHccch------h--HHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHH
Q 018388           82 AMLTLPL-TLSIIPLAILAYRRSI------S--FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV  152 (357)
Q Consensus        82 ~~l~~~~-~~~~~~~~~~~~~~~~------~--~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  152 (357)
                      |..++-+ .+.+......+.-.+.      .  ....+....++.-+ .++....+...+.-...++|+.|-+......+
T Consensus        99 ksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnf-laAtQDIAVDgwALtmLs~e~lgyaST~q~Vg  177 (510)
T KOG3574|consen   99 KSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNF-LAATQDIAVDGWALTMLSRENLGYASTCQSVG  177 (510)
T ss_pred             cceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHH-HHhhhhhhhhHHHHHhcCHhhcCchhHHHHHH
Confidence            9877533 3333333333332110      0  01222223344444 44666677888888888888888888777777


Q ss_pred             HHHHHHhhHhhhHH----------h-hh---------HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccc
Q 018388          153 LSASFVCGTLAARF----------L-ST---------TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEET  212 (357)
Q Consensus       153 ~~~g~~~g~~~~~~----------l-~~---------~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  212 (357)
                      ...|..+|..+--.          + +|         ..-.++.+.+..+.-.+..+.-+|.+....++           
T Consensus       178 ~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e-----------  246 (510)
T KOG3574|consen  178 QTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEE-----------  246 (510)
T ss_pred             HhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh-----------
Confidence            77777766432110          0 11         11122333333333333333333322221110           


Q ss_pred             cccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHH
Q 018388          213 EGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAG  292 (357)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  292 (357)
                                    .+.+..+..+- ++...+-|.+..........-.++.+.....+.-+.|. |.+.++.+.......
T Consensus       247 --------------~~~~i~~~yk~-l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~-Gv~ke~Lal~~v~~~  310 (510)
T KOG3574|consen  247 --------------LELGIHESYKL-LRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEH-GVPKEELALIAVPLV  310 (510)
T ss_pred             --------------hhcCHHHHHHH-HHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHc-CCChhHheeeeeehh
Confidence                          01111112222 22233467777777777777888888888888888886 999988777664444


Q ss_pred             HHHHHHHHHHHhhhh
Q 018388          293 LAGTISQLLFMPLLA  307 (357)
Q Consensus       293 ~~~~~~~~~~~~~l~  307 (357)
                      -..++.. ...|+..
T Consensus       311 plqI~l~-~~~gk~t  324 (510)
T KOG3574|consen  311 PLQIALP-LYIGKWT  324 (510)
T ss_pred             hHHHhhh-hhheeec
Confidence            4444444 3334433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.03  E-value=6.9e-05  Score=66.68  Aligned_cols=113  Identities=20%  Similarity=0.221  Sum_probs=93.4

Q ss_pred             hhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcc----cCcchHHHHHHHHHHHHHHHHHHHHhhhhhc-cchhHHH
Q 018388          242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH----FNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLL  316 (357)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~  316 (357)
                      +.++|.++.++..-+.--+++++....+..|+...++    +|.+++.-+++.++...-... +++||+.|| .|+|+++
T Consensus        17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~-i~GG~laDr~LG~~~tI   95 (498)
T COG3104          17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTP-IIGGWLADRVLGTRRTI   95 (498)
T ss_pred             CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHH-HHHHHHHHHhcchhHHH
Confidence            3447788889999999999999999999999988888    999888888888887777766 899999998 5999999


Q ss_pred             HHHHHHHHHHHHHHHhcC--cchHHHH-HHHHHHhhhccccc
Q 018388          317 SLGLFAACINMFICSISW--SAWVPYA-TTAFSVLVVFATPS  355 (357)
Q Consensus       317 ~~~~~~~~i~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~p~  355 (357)
                      ..|.++..++.++++...  ....+++ ..++.+|.|..=|.
T Consensus        96 ~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~N  137 (498)
T COG3104          96 VLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPN  137 (498)
T ss_pred             HHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccccccc
Confidence            999999999999998874  4445555 45667888876554

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.95  E-value=1.7e-05  Score=70.91  Aligned_cols=104  Identities=16%  Similarity=0.155  Sum_probs=78.6

Q ss_pred             HHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhH
Q 018388          235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (357)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  314 (357)
                      +.+..+. +.++....+++..++.......+.+++--+++|. +-.+...|......-.+.+..- ++.+++.+|+|+-+
T Consensus       361 ~a~~~~~-~~s~~~llff~~av~mG~g~~lv~tFLfWHled~-~~~~~LfGv~~a~~~~gEI~~~-ffs~klI~kiGHv~  437 (618)
T KOG3762|consen  361 LADVGKV-FASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDL-GGIKTLFGVVSALCHAGEILFY-FFSFKLIEKIGHVN  437 (618)
T ss_pred             HHHHHHH-hcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeehhhhhccchHHHH-HHHHHHHHHhcccc
Confidence            3443333 4467777777888888888888888887788886 5555555755555555555555 88899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCcchHHHH
Q 018388          315 LLSLGLFAACINMFICSISWSAWVPYA  341 (357)
Q Consensus       315 ~~~~~~~~~~i~~~~~~~~~~~~~~~~  341 (357)
                      ++..++....+-++.++..++.|....
T Consensus       438 v~~lgLa~~~~Rf~~~S~L~n~W~vLP  464 (618)
T KOG3762|consen  438 VMYLGLACNVGRFLYYSYLQNPWMVLP  464 (618)
T ss_pred             eeeehhhHHHHHHHHHHHhcCchheee
Confidence            999999999999999999888887554

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.89  E-value=0.017  Score=51.81  Aligned_cols=256  Identities=12%  Similarity=0.098  Sum_probs=150.6

Q ss_pred             HHHHHHHHHH-HHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHcc---------c----------hh-----H-
Q 018388           53 SGFQQAIIGL-GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR---------S----------IS-----F-  106 (357)
Q Consensus        53 ~g~~~~~~~~-~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~---------~----------~~-----~-  106 (357)
                      ..++=+..-+ +.++..++.+++.++..|.+++-.-+..+....+++++.-         +          .+     . 
T Consensus        63 I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~i  142 (509)
T COG3202          63 ISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFI  142 (509)
T ss_pred             hHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeee
Confidence            4555555555 5677888999999999999998877777666666666531         1          00     0 


Q ss_pred             ----HHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHhhh-------------
Q 018388          107 ----FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST-------------  169 (357)
Q Consensus       107 ----~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-------------  169 (357)
                          .|..-+...+.-+.+.-...-.-.....|.+..||-.|..+.++...+++..++..+..+++-             
T Consensus       143 li~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~~~~~  222 (509)
T COG3202         143 LIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEFKDLL  222 (509)
T ss_pred             EeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHHHHHH
Confidence                133333344444422122222455678899999999999999999999999988877776521             


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccch
Q 018388          170 -TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTL  248 (357)
Q Consensus       170 -~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (357)
                       +..+.+.+..+.++..+ .+++.+.-.+++.--                 .+...+++.++.+-...+..+.+.|.|.+
T Consensus       223 ~~~~~~vi~~~~~i~~~l-~~~~~r~il~~~~f~-----------------~~~~~kk~~~k~k~~~~~s~k~i~~SkyL  284 (509)
T COG3202         223 LQILFIVIVILGIIAILL-YRYINRNVLTDPLFY-----------------LRAKKKKKKKKLKLGLIESFKMILRSKYL  284 (509)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhhcccCcchh-----------------HHHhcccccccccCcHHHHHHHHHhhhHH
Confidence             22233333333333333 233322111111100                 00000111222333566777778889999


Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcc---hHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHH
Q 018388          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN---QFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (357)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i  325 (357)
                      +...+...+++.+...+....-.-.++.+-.+.+   -.|.+....++...+.....++.+.+|.|-....++.-+...+
T Consensus       285 ~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~li  364 (509)
T COG3202         285 GAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLI  364 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            9988888888888777765544444433322222   2345556666665555657888999999977665555444444


Q ss_pred             H
Q 018388          326 N  326 (357)
Q Consensus       326 ~  326 (357)
                      +
T Consensus       365 t  365 (509)
T COG3202         365 T  365 (509)
T ss_pred             H
Confidence            4

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.84  E-value=0.00019  Score=65.42  Aligned_cols=156  Identities=13%  Similarity=0.106  Sum_probs=92.8

Q ss_pred             hhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----cCcchhh
Q 018388            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAML   84 (357)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr----~Grk~~l   84 (357)
                      .++...+..+......+.....+|.++++       ..+.+..+.+.+...+.++.+++.+..|.++||    ..+|...
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~-------~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~  346 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKS-------NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLF  346 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHc-------CCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            35666777777777777778888999874       234555677888888999999999999999999    6666666


Q ss_pred             hHHHHHHH-HHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchh-HHHHHHHHHHHHHHHh-hH
Q 018388           85 TLPLTLSI-IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRA-SAFGILLGVLSASFVC-GT  161 (357)
Q Consensus        85 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~-~~~~~~~~~~~~g~~~-g~  161 (357)
                      .....+.. ++.......++   ..... +-++.|..+.....+.......+....+.|. ...+....+.+.+..+ ++
T Consensus       347 ~~~~~~~~~~g~~~l~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~  422 (495)
T KOG2533|consen  347 IVFLCLYAIIGAISLLAAAV---LPGAY-GAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQ  422 (495)
T ss_pred             HHHHHHHHHHHHHHHHhhcc---chHHh-HHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhh
Confidence            65554444 44344444433   11111 2222232233445566777777777654443 3334444444443333 33


Q ss_pred             hhhH----HhhhHHHHHH
Q 018388          162 LAAR----FLSTTSAFQA  175 (357)
Q Consensus       162 ~~~~----~l~~~~~f~~  175 (357)
                      ..-+    ...|.+.|..
T Consensus       423 ~~~~~~ap~y~~~~~f~~  440 (495)
T KOG2533|consen  423 LFRSLDAPRYGWGAVFYM  440 (495)
T ss_pred             hcccccCcchhhhhHHHH
Confidence            3332    2466666743

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.84  E-value=0.00032  Score=60.33  Aligned_cols=123  Identities=20%  Similarity=0.201  Sum_probs=102.7

Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcC--cchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhc
Q 018388           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG--RKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMV  120 (357)
Q Consensus        43 ~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~G--rk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~  120 (357)
                      ...++.++.+.|-+.+...+...+.+....+..||..  -|-.+..+..+..=..++.+.++.   ...++.+-.+-.+ 
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~---~~~l~~~s~l~sf-  364 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLART---PVVLYLGSTLKSF-  364 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcccc---chhhhHHHHHHHH-
Confidence            3467888888999999999999999999999999987  677777777776666677777777   5666777777777 


Q ss_pred             ccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-hh
Q 018388          121 CEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-ST  169 (357)
Q Consensus       121 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-~~  169 (357)
                      +++...+....++....|.++||..+|+.....+++-.+||+++|.. .|
T Consensus       365 ~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  365 STASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            66666688889999999999999999999999999999999999775 45

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.81  E-value=0.0021  Score=60.09  Aligned_cols=136  Identities=19%  Similarity=0.140  Sum_probs=93.7

Q ss_pred             HHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccch
Q 018388           63 GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQR  142 (357)
Q Consensus        63 ~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r  142 (357)
                      .........+...|++|||.....+..+..++.+..++..+....+...+...+..+ +.+........+.+|..|..-|
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~el~pt~~r  440 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKF-FIGSAFNLIFLYSAELIPTVVR  440 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccHHHH
Confidence            444444556899999999999999999999999999988763321112222333222 2233334568899999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhHhhhHHhhh---HHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 018388          143 ASAFGILLGVLSASFVCGTLAARFLST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (357)
Q Consensus       143 ~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~  199 (357)
                      ..+.+..+....+|.+++|.+-.....   ...+.+.+....+...+...++||+.....
T Consensus       441 ~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l  500 (521)
T KOG0255|consen  441 NTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPL  500 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCC
Confidence            999999999999999999987755432   222222344555555566678999876543

>PTZ00207 hypothetical protein; Provisional

Probab=97.78  E-value=0.00027  Score=65.86  Aligned_cols=82  Identities=10%  Similarity=0.154  Sum_probs=59.3

Q ss_pred             HHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhc------CcchHHHH-H
Q 018388          270 LYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS------WSAWVPYA-T  342 (357)
Q Consensus       270 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~-~  342 (357)
                      ...+++.+|+|..+.+.+.+... .....+ +..|++.||+|+|+++.++.++..++.++.+++      .+.+.+++ .
T Consensus        50 s~~L~~~lgls~~~l~~i~svg~-~~g~~~-lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r  127 (591)
T PTZ00207         50 SGAMQARYNLTQRDLSTITTVGI-AVGYFL-LPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYN  127 (591)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHH-HHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence            33556678999999888876633 333445 577999999999999999999999999888886      34454444 3


Q ss_pred             HHHHHhhhccc
Q 018388          343 TAFSVLVVFAT  353 (357)
Q Consensus       343 ~~~~~~~~~~~  353 (357)
                      .+.+.|.+...
T Consensus       128 ~l~G~G~~~~~  138 (591)
T PTZ00207        128 GLMTLGCMLFD  138 (591)
T ss_pred             HHHHHHHHHHH
Confidence            45566655443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.75  E-value=4.4e-07  Score=82.94  Aligned_cols=139  Identities=20%  Similarity=0.207  Sum_probs=91.7

Q ss_pred             HHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHH--H--ccchh---HHHHHHHHHHHhhhcccchHHHHHHHHH
Q 018388           61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA--Y--RRSIS---FFYAYYALRTLTAMVCEGSINCLALAYV  133 (357)
Q Consensus        61 ~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~--~--~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~~i  133 (357)
                      .+...++.+....+.||+|||+.++.+..+.++.....+  .  .++..   .............. ......+....+.
T Consensus       296 ~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-~~~g~~~~~~~~~  374 (451)
T PF00083_consen  296 GLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAF-FSLGWGPLPWIYT  374 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccc-ccccccccccccc
Confidence            344556667778999999999999999888877766664  1  11110   01111111111111 1223335677888


Q ss_pred             hhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 018388          134 ADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (357)
Q Consensus       134 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~  200 (357)
                      +|.+|.+.|+++.++......++..++|.+...+    +-...+.+.+.+..+..+..++++||++....+
T Consensus       375 ~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~  445 (451)
T PF00083_consen  375 AELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLE  445 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHH
Confidence            9999999999999999988888888887665553    323456666666677777778889998765433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.74  E-value=0.00036  Score=62.60  Aligned_cols=91  Identities=12%  Similarity=0.093  Sum_probs=75.9

Q ss_pred             hhhhhHHHHHhhhhhcccCcch-HHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCcchHHH
Q 018388          262 EGGMQASFLYFLKAQFHFNKNQ-FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPY  340 (357)
Q Consensus       262 ~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  340 (357)
                      .=...++...++.+.+|++..+ .|.+.+....+..+.. +..|++.||+|.|+++..+.+...+..+++.++++...+.
T Consensus        41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~q-Ip~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~  119 (511)
T TIGR00806        41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVL-VPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQ  119 (511)
T ss_pred             hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345666666777788999999 9999999999999999 8999999999999999999999999999999987766655


Q ss_pred             H-HHHHHHhhhccc
Q 018388          341 A-TTAFSVLVVFAT  353 (357)
Q Consensus       341 ~-~~~~~~~~~~~~  353 (357)
                      + =+++|++.|...
T Consensus       120 i~R~llGvaEA~~~  133 (511)
T TIGR00806       120 LMEVFYSVTMAARI  133 (511)
T ss_pred             HHHHHHHHHHHHHH
Confidence            5 467787776543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.72  E-value=0.001  Score=60.30  Aligned_cols=119  Identities=16%  Similarity=0.198  Sum_probs=100.8

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhccc
Q 018388           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIG-NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (357)
Q Consensus        44 ~~~~~s~~~~g~~~~~~~~~~~i~~~~~G-~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  122 (357)
                      ..++++....+...+.......+++.+.. .+...+|-|+....++..-.+.....+++++   .|..+....+.++ . 
T Consensus       270 ~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~---~w~~~~~~v~~~~-~-  344 (463)
T KOG2816|consen  270 AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE---TWMMFAAGVVVAL-A-  344 (463)
T ss_pred             eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc---chhhhHHHHHHHh-h-
Confidence            35666677778777777777788887776 7777889999999999999999999999999   7888888888887 4 


Q ss_pred             chHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      ....|...+.++.+.++|++|+++++.+...++...++|.+-+.+
T Consensus       345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence            455589999999999999999999999999999999998776654

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.48  E-value=0.0014  Score=43.80  Aligned_cols=77  Identities=14%  Similarity=0.136  Sum_probs=65.2

Q ss_pred             HhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCcchH
Q 018388          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV  338 (357)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  338 (357)
                      .+-+.+...+|...+|. ++|..+.|++-+...++..++. +...++.++.++++.+..+.+...+..+.+++.++.+.
T Consensus         6 igRFayTplLP~M~~~~-~ls~~~ag~lasaNy~GYL~GA-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~   82 (85)
T PF06779_consen    6 IGRFAYTPLLPLMQADG-GLSLSQAGWLASANYLGYLVGA-LLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL   82 (85)
T ss_pred             hHHHHHHhHhHHHHHhc-CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            34455677788777765 9999999999999999999998 88889888888889999999999999999998877654

Note that many members are hypothetical proteins.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.31  E-value=0.0016  Score=58.00  Aligned_cols=104  Identities=16%  Similarity=0.142  Sum_probs=77.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHccchh------HHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCcc---chhHHHHHHHHH
Q 018388           82 AMLTLPLTLSIIPLAILAYRRSIS------FFYAYYALRTLTAMVCEGSINCLALAYVADNISER---QRASAFGILLGV  152 (357)
Q Consensus        82 ~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~  152 (357)
                      |.++++.++..+|.++..++....      ..+.++++-.+.++ |.|..-|...++.+|.++++   +|.+...++..+
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~-G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~   80 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAV-GTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG   80 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHH-HHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHh-ccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            467788888888888855442211      12567888888898 77888899999999999865   466778889999


Q ss_pred             HHHHHHhhHhhhHHh----hhHHHHHHHHHHHHHHHHH
Q 018388          153 LSASFVCGTLAARFL----STTSAFQAATIVSMLAAAY  186 (357)
Q Consensus       153 ~~~g~~~g~~~~~~l----~~~~~f~~~~~~~~~~~~~  186 (357)
                      .++|..+++.+.+++    +|.+.|.+.++..++..+.
T Consensus        81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~  118 (372)
T PF00854_consen   81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV  118 (372)
T ss_dssp             HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence            999999998887776    7899999888775555443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.019  Score=51.74  Aligned_cols=152  Identities=18%  Similarity=0.210  Sum_probs=98.3

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hcCcchhh
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD---QYGRKAML   84 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~d---r~Grk~~l   84 (357)
                      ++...+....+..++..+......|.-..-....+..    +....++..-...++..+++.+.+.+++   |+||++.+
T Consensus       240 ~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n----~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~  315 (461)
T KOG3098|consen  240 PKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSN----TTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTV  315 (461)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCc----chhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcch
Confidence            3445555555666666666666666655431111111    1122344444446666667777777765   57999999


Q ss_pred             hHHHHHHHHHHHHHHHccchh---------------HHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHH
Q 018388           85 TLPLTLSIIPLAILAYRRSIS---------------FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL  149 (357)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~  149 (357)
                      .++..+..++.++.-......               .....++.-++.|+ +-+......+..+.+.. +++|.++.++.
T Consensus       316 ~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~-~D~~~~t~~~~ii~~~~-~~~~~~~fsi~  393 (461)
T KOG3098|consen  316 LIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF-GDACFNTQRYVIIALLY-PDDRAQAFSLF  393 (461)
T ss_pred             hHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh-HHHHHHHHHHHHHHHHh-cCchHHHHHHH
Confidence            999988888877766542110               14466777888998 77888788888888888 58888999888


Q ss_pred             HHHHHHHHHhhHhhhH
Q 018388          150 LGVLSASFVCGTLAAR  165 (357)
Q Consensus       150 ~~~~~~g~~~g~~~~~  165 (357)
                      ..-.+++..++-....
T Consensus       394 kfyq~~~s~v~~f~~~  409 (461)
T KOG3098|consen  394 KFYQSVASCVAFFFSP  409 (461)
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            8888887766544443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.20  E-value=0.00085  Score=59.29  Aligned_cols=83  Identities=13%  Similarity=0.210  Sum_probs=72.7

Q ss_pred             hhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCcchHHHHH-HHHHHhhhc
Q 018388          273 LKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVF  351 (357)
Q Consensus       273 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~  351 (357)
                      .++.+|.++...|++.....+...+.+ .+.|++.||++|++++.+|..+..++.+..++....|.+.+. .+.|+|.+.
T Consensus        59 v~~~fni~~s~~Gll~~vf~v~~~i~s-Pl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs  137 (493)
T KOG1330|consen   59 VQTYFNISDSELGLLQTVFIVVFMIAS-PLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEAS  137 (493)
T ss_pred             HHHhcCCCchhccchhHHHHHHHHHHH-HHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence            345579999999999999999999999 888999999999999999999999999999999888877774 677999888


Q ss_pred             ccccC
Q 018388          352 ATPSV  356 (357)
Q Consensus       352 ~~p~~  356 (357)
                      ..|..
T Consensus       138 ~~~ia  142 (493)
T KOG1330|consen  138 YSPIA  142 (493)
T ss_pred             hcccc
Confidence            87753

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.02  E-value=0.0014  Score=62.49  Aligned_cols=72  Identities=13%  Similarity=0.194  Sum_probs=58.5

Q ss_pred             hhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhc
Q 018388          261 SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS  333 (357)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  333 (357)
                      ...++....-.-+++++++++.+.|.+.+.+.++..+.. ++.+++.||.+||+.+.++.++.+++.+++++.
T Consensus        47 ~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~-i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alp  118 (633)
T TIGR00805        47 LYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLI-IFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLP  118 (633)
T ss_pred             HHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHH-HHHHHhhcccCcceEEEecHHHHHHHHHHHhCh
Confidence            333443333345566789999999999999999999988 788999999999999999999999998877653

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.91  E-value=0.029  Score=48.46  Aligned_cols=75  Identities=17%  Similarity=0.071  Sum_probs=58.1

Q ss_pred             hcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCcchHHHHH-HHHHHhhhcc
Q 018388          276 QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYAT-TAFSVLVVFA  352 (357)
Q Consensus       276 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~  352 (357)
                      .+|++.++++.++........+.+ .+.|.+.||+|||+.-+...++..++++. -..++...+++. ++-|++..+.
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g-~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLL  138 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFG-TFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLL  138 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHH
Confidence            469999999999998888888888 67799999999999988888888888854 344556666664 4445555443

>PRK03612 spermidine synthase; Provisional

Probab=96.88  E-value=0.12  Score=47.98  Aligned_cols=118  Identities=14%  Similarity=0.002  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH-HHHHHH-HHHHHHHHccch--hHHHHHHHHHHHhhhcccc
Q 018388           48 LAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL-PLTLSI-IPLAILAYRRSI--SFFYAYYALRTLTAMVCEG  123 (357)
Q Consensus        48 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~-~~~~~~-~~~~~~~~~~~~--~~~~~~~~~r~l~G~~~~~  123 (357)
                      -+....+.+.+++..+..+|+...+++.++--|+....- ...+.+ ++..+.......  ......+...++.++ ..|
T Consensus        47 ~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-l~G  125 (521)
T PRK03612         47 DSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL-LIG  125 (521)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            334556888999999999999988887643322222111 111111 111111111110  001122233344555 445


Q ss_pred             hHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      ...|....+..+.. .++-++..|.......+|.++|+++.+++
T Consensus       126 ~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~v  168 (521)
T PRK03612        126 MEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFL  168 (521)
T ss_pred             HHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence            55566666555432 23346677888888888888888777663

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.81  E-value=0.0019  Score=56.98  Aligned_cols=101  Identities=9%  Similarity=0.081  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhcCc-chhhhHHHHHHHHHHHH-HHHccchhHHHHHHHHHHHhhhcccchHHHH
Q 018388           51 YLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAMLTLPLTLSIIPLAI-LAYRRSISFFYAYYALRTLTAMVCEGSINCL  128 (357)
Q Consensus        51 ~~~g~~~~~~~~~~~i~~~~~G~l~dr~Gr-k~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  128 (357)
                      ...|++.....++.++++...|.+.||... |...++......++... .....+....+.++..-.+.|. ......|.
T Consensus       301 ~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~-~~~~~~Pi  379 (480)
T KOG2563|consen  301 VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGF-FGTGYLPI  379 (480)
T ss_pred             cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHH-hhcCCCCc
Confidence            456999999999999999999999999876 66666666666555322 2222222223555666667777 43445588


Q ss_pred             HHHHHhhCCCccchhHHHHHHHHH
Q 018388          129 ALAYVADNISERQRASAFGILLGV  152 (357)
Q Consensus       129 ~~~~i~~~~~~~~r~~~~~~~~~~  152 (357)
                      ..-+-.|.+-|..-+...|.....
T Consensus       380 g~ElgvE~TyPv~E~tSsGll~~~  403 (480)
T KOG2563|consen  380 GFELGVETTYPVAEGTSSGLLNLS  403 (480)
T ss_pred             ceeeeeeeccccCCcccceeEEee
Confidence            888877776544434444544433

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=96.68  E-value=0.0083  Score=50.27  Aligned_cols=178  Identities=12%  Similarity=0.078  Sum_probs=96.6

Q ss_pred             hhHHHHHHHHHHHHHHhhHhhHHHHHHHHhc-CC------CccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcch
Q 018388           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALC-PG------LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA   82 (357)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~   82 (357)
                      ....++.-.+..+++.++..+--+++.+..+ ++      .+.-+-...-.|.+.-.-.+...+..+......||+---.
T Consensus        14 ~~~FwllGLcNN~~YVvmLSAA~DIl~~~~~~~~~~c~~h~~~r~c~~~stg~VLLaDilPsL~iKl~~Pff~~rfpf~~   93 (409)
T KOG3880|consen   14 AVAFWLLGLCNNYGYVVMLSAAEDILSEQVSDPGPTCIPHNSGRECQSVSTGAVLLADILPSLAIKLTAPFFIHRFPFGF   93 (409)
T ss_pred             chHHHHHHHhcccceEeehhhhhhhhccccCCCCCCcccccccccccccccchhhhhhhhHHHHHHHhchhhhhhcccch
Confidence            3444555556666666555555555554322 00      0111111112366666667778888888888899875444


Q ss_pred             hhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHh
Q 018388           83 MLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (357)
Q Consensus        83 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  162 (357)
                      =..+..++.+.+..+.+++++   .+.-+.+-.+..+ ++|.-.. .+--.+..+++.    ..+.++.+.+.+.++|..
T Consensus        94 Ri~~~v~~sa~s~~lVafs~s---~~~sL~GV~~aSi-ssGlGEi-TFL~lss~Y~~~----~i~~WSSGTGgAGliGa~  164 (409)
T KOG3880|consen   94 RIALVVLLSALSFFLVAFSNS---VPMSLLGVVFASI-SSGLGEI-TFLALSSRYPSI----VIAGWSSGTGGAGLIGAS  164 (409)
T ss_pred             HHHHHHHHHhcceEEEEeccc---hhHHHhhhhhhhh-cCCccee-ehhhhhccCCCc----eeccccCCCCcchhhhhh
Confidence            445556667777888888888   7666777777777 5554432 222233333322    222333333333444432


Q ss_pred             hhHHh------hhHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 018388          163 AARFL------STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (357)
Q Consensus       163 ~~~~l------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~  196 (357)
                      --..+      ..|...++...+..+.+...++.+++++.
T Consensus       165 SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes  204 (409)
T KOG3880|consen  165 SYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPES  204 (409)
T ss_pred             HHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCcc
Confidence            21111      34667777766666666665666655443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.57  E-value=0.13  Score=45.71  Aligned_cols=108  Identities=14%  Similarity=0.169  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHH--HHHH---HHHHccchhHHHHHHHHHHHhhhcccchHH
Q 018388           52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI--IPLA---ILAYRRSISFFYAYYALRTLTAMVCEGSIN  126 (357)
Q Consensus        52 ~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~  126 (357)
                      +--+....|.+|..++.--...    +--|+..+.+.+...  +..+   ..-+.++   .|..++.-+..|+ .+|..+
T Consensus       282 ~Y~~Y~~~YQ~GVFISRSS~~~----~rir~lwils~LQ~~nl~~~~l~s~~~fips---i~ivf~lif~eGL-lGGa~Y  353 (402)
T PF02487_consen  282 QYRWYQLLYQLGVFISRSSLPF----FRIRRLWILSLLQVINLVFLLLQSWYRFIPS---IWIVFVLIFYEGL-LGGASY  353 (402)
T ss_pred             HHHHHHHHHHHHHhhhhcceee----eehhhHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-hhhHHH
Confidence            4455566666666555433221    223455444433222  2222   2223455   7888889999999 667777


Q ss_pred             HHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388          127 CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus       127 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      ...+..+.|-.++|+|..+++..+.+-++|..++..++-.+
T Consensus       354 VNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  354 VNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999988877554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.53  E-value=0.022  Score=51.74  Aligned_cols=145  Identities=8%  Similarity=0.058  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHH-c---------cchhHHHHHHHHHHHh
Q 018388           48 LAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY-R---------RSISFFYAYYALRTLT  117 (357)
Q Consensus        48 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~r~l~  117 (357)
                      .+....|.+..+..++..++.....+.--+..-|+++..+.++..+..+.-.. .         ++   .+..+.--++.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d---~~f~lgd~~l~  328 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPD---QWFALGDTILE  328 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCC---eEEEEEhHHHH
Confidence            66777888888888999999999988888888888888887776655543221 1         11   11122233344


Q ss_pred             hhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHhh------------hHHHHHHHHHHHHHHHH
Q 018388          118 AMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS------------TTSAFQAATIVSMLAAA  185 (357)
Q Consensus       118 G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~------------~~~~f~~~~~~~~~~~~  185 (357)
                      .+ .....+-....+++|..|+..-+...++.....++|..++..++..+.            -.+..++.....++...
T Consensus       329 ~~-~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~  407 (433)
T PF03092_consen  329 EV-IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLP  407 (433)
T ss_pred             HH-HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence            44 223333457788999999999999999999999999888888777651            12334444444433333


Q ss_pred             HHHHhccCCCCC
Q 018388          186 YMRVFLKDDVPN  197 (357)
Q Consensus       186 ~~~~~~~e~~~~  197 (357)
                      + ...+|++++.
T Consensus       408 l-l~lLp~~~~~  418 (433)
T PF03092_consen  408 L-LFLLPPQKRI  418 (433)
T ss_pred             H-HHHcCCCchh
Confidence            3 4456665443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.26  E-value=0.0041  Score=46.21  Aligned_cols=63  Identities=21%  Similarity=0.151  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCcchHHHH-HHHHHHhhhccc
Q 018388          290 IAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFAT  353 (357)
Q Consensus       290 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  353 (357)
                      ...++..+++ +..+++.||++||+.+..+.....++.+.....++.+.... ..+.+++.+...
T Consensus         6 ~~~~~~~~~~-~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   69 (141)
T TIGR00880         6 GYALGQLIYS-PLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL   69 (141)
T ss_pred             eehhHHHHHH-hhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            3455666777 78899999999999999998888888777777666555444 345555555443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.15  E-value=0.035  Score=52.94  Aligned_cols=95  Identities=14%  Similarity=0.097  Sum_probs=70.4

Q ss_pred             hhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhh-ccchhHHHHHHHHHHHHHHHHHHhcCcc---
Q 018388          261 SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP-ILGEAKLLSLGLFAACINMFICSISWSA---  336 (357)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~---  336 (357)
                      .++++...+..|+.+.+|++...+..++.......-+.. ++++++.| ++|+++.+..+.++..++..++.+....   
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~p-ilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTP-LIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            345667777888888889998887877777777777766 78899998 5799999999999999998887764211   


Q ss_pred             -----hHHHH-HHHHHHhhhcccccC
Q 018388          337 -----WVPYA-TTAFSVLVVFATPSV  356 (357)
Q Consensus       337 -----~~~~~-~~~~~~~~~~~~p~~  356 (357)
                           ...+. ..+...|.|..-|++
T Consensus        81 ~~~~~~~~l~gLaLia~G~GgiKp~v  106 (654)
T TIGR00926        81 HPLHDLLDLLGLALIALGTGGIKPCV  106 (654)
T ss_pred             cchHHHHHHHHHHHHHhhccccccCc
Confidence                 11223 455677777777765

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.12  E-value=1  Score=40.96  Aligned_cols=86  Identities=9%  Similarity=0.043  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHH-HHHHHH----ccchhHHHHHHHHHHHhhhcccchHHH
Q 018388           53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIP-LAILAY----RRSISFFYAYYALRTLTAMVCEGSINC  127 (357)
Q Consensus        53 ~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~r~l~G~~~~~~~~~  127 (357)
                      ..+......+...+..+..-.+..|+..|.=+..++++..+. .....+    .+....++..++.-++.|+ +.+..+.
T Consensus        47 ~~~~~~~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv~~~~~~~~~~~l~~~~~~~~~~f~~~~~~v~~~g~-~~~~~q~  125 (437)
T TIGR00939        47 NTYYTLASQLPSLLFNSLNLFLIFRIPVTVRLLGGLVILLVVVILVMVLVKVQTSETGFFVTTMASVVIINS-GMALLQG  125 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHhheeeecCCcchHHHHHHHHHHHHHh-hhhhhcc
Confidence            344444555666666666666666766533333343322222 111111    1221235666677778887 6666666


Q ss_pred             HHHHHHhhCCCcc
Q 018388          128 LALAYVADNISER  140 (357)
Q Consensus       128 ~~~~~i~~~~~~~  140 (357)
                      ...++.+ .+|++
T Consensus       126 s~~gla~-~fp~~  137 (437)
T TIGR00939       126 SLFGLAG-VFPST  137 (437)
T ss_pred             cchhhcc-cCCHH
Confidence            6666666 45543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.98  E-value=0.41  Score=43.24  Aligned_cols=120  Identities=13%  Similarity=0.037  Sum_probs=82.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHH---Hccc----hhHHHHHHHHHHHhhh
Q 018388           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA---YRRS----ISFFYAYYALRTLTAM  119 (357)
Q Consensus        47 ~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~r~l~G~  119 (357)
                      +.+....|..-+...+..+.+.....++.+|+|..|.=+.+.........++.   +.+.    ......++.+-.+.=+
T Consensus       289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~  368 (432)
T PF06963_consen  289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI  368 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence            67778889999999999999999999999999998877766654433322222   2222    1223344444444444


Q ss_pred             cccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh
Q 018388          120 VCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (357)
Q Consensus       120 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  167 (357)
                      |- =.+.-+..-++.|.+|+++||...|.-....++-..+--.++-.+
T Consensus       369 GL-W~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  369 GL-WSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HH-HhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            22 234457788889999999999999998888887766665554443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=95.45  E-value=0.15  Score=42.27  Aligned_cols=63  Identities=14%  Similarity=0.223  Sum_probs=53.3

Q ss_pred             HHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHh
Q 018388          268 SFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI  332 (357)
Q Consensus       268 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  332 (357)
                      .....+++.+|+|.++...+-....++..+ + +..|.+.||.|++.++.+|.....+++.++..
T Consensus        23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l   85 (250)
T PF06813_consen   23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-G-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWL   85 (250)
T ss_pred             hhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-c-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            344466778899999988888888888776 4 78899999999999999999999999887765

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=95.35  E-value=0.41  Score=45.01  Aligned_cols=130  Identities=18%  Similarity=0.177  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhc-CcchhhhHHHHHHHHHHHHHHHccc----------------------hhHHHHHH
Q 018388           55 FQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLPLTLSIIPLAILAYRRS----------------------ISFFYAYY  111 (357)
Q Consensus        55 ~~~~~~~~~~~i~~~~~G~l~dr~-Grk~~l~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~  111 (357)
                      -....+.-......+..+.++|.| ||-+++.++.++..++..+..++..                      ......++
T Consensus        77 ~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~  156 (571)
T KOG1237|consen   77 NNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLY  156 (571)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHH
Confidence            334444555666778899999975 8889999888888877555444211                      11234566


Q ss_pred             HHHHHhhhcccchHHHHHHHHHhhCCCc---cc---hhHHHHHHHHHHHHHHHhhHhhhHHh----hhHHHHHHHHHHHH
Q 018388          112 ALRTLTAMVCEGSINCLALAYVADNISE---RQ---RASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSM  181 (357)
Q Consensus       112 ~~r~l~G~~~~~~~~~~~~~~i~~~~~~---~~---r~~~~~~~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~~~  181 (357)
                      .+.-+..+ +.|...|...++-+|.+++   ++   +...+.++....+.|..++-.+--+.    +|.+.|.+..+...
T Consensus       157 ~~l~lia~-G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~  235 (571)
T KOG1237|consen  157 GALYLIAL-GAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNA  235 (571)
T ss_pred             HHHHHhee-ccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHH
Confidence            66667777 6677788999999999883   22   22567788888888888776555443    88888887766644


Q ss_pred             HHHH
Q 018388          182 LAAA  185 (357)
Q Consensus       182 ~~~~  185 (357)
                      ++.+
T Consensus       236 lai~  239 (571)
T KOG1237|consen  236 LAIL  239 (571)
T ss_pred             HHHH
Confidence            4433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=94.69  E-value=0.49  Score=43.04  Aligned_cols=111  Identities=11%  Similarity=0.112  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhcCcc-hhhhHHHHHHHHHH---HHHHHcc------chhHHHHHHHHHHHhhhcc
Q 018388           52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRK-AMLTLPLTLSIIPL---AILAYRR------SISFFYAYYALRTLTAMVC  121 (357)
Q Consensus        52 ~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk-~~l~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~~r~l~G~~~  121 (357)
                      ..-....++.++..+|..+..+.. .-++| +.+.+..+.-.+..   ++|..-+      -...-+..++..++.|+ .
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gl-t  385 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGF-S  385 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHH-h
Confidence            445667778888888877554321 11223 13333333333332   2332211      00114566777899999 7


Q ss_pred             cchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh
Q 018388          122 EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (357)
Q Consensus       122 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  164 (357)
                      .|...+.+..+..+..+++||..+-.+...+..+|..+|..++
T Consensus       386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888899999999999999999999999988887654

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=94.61  E-value=0.54  Score=39.13  Aligned_cols=133  Identities=16%  Similarity=0.099  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhcCcc--hhhhHHHHHHHHHHHHHHH----ccchhHHHHHHHHHHHhhhcccchHHH
Q 018388           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRK--AMLTLPLTLSIIPLAILAY----RRSISFFYAYYALRTLTAMVCEGSINC  127 (357)
Q Consensus        54 g~~~~~~~~~~~i~~~~~G~l~dr~Grk--~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~~~~~~~~~  127 (357)
                      |.+.+.+.++.++++-+..++..|-.+|  +.+.+..+...+...+...    +|+-.....-+++..+.-. +.|.++|
T Consensus       285 GfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~-cvGlfwP  363 (454)
T KOG4332|consen  285 GFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEA-CVGLFWP  363 (454)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHH-HHhhcch
Confidence            8999999999999999998888876654  3444544444443333222    2221112222333333344 5567889


Q ss_pred             HHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhh----hHHhhhHHHHHHHHHHHHHHHHHH
Q 018388          128 LALAYVADNISERQRASAFGILLGVLSASFVCGTLA----ARFLSTTSAFQAATIVSMLAAAYM  187 (357)
Q Consensus       128 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~----~~~l~~~~~f~~~~~~~~~~~~~~  187 (357)
                      ....+=.+..|+++|...+.++..-.++=.-++-..    +--.+-|..|-+..+...+..+..
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~  427 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQ  427 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHHH
Confidence            999999999999999999988766554432222111    001245677777766655544443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=94.57  E-value=0.35  Score=39.95  Aligned_cols=51  Identities=2%  Similarity=-0.076  Sum_probs=33.4

Q ss_pred             cchhHHHHHHHHHHHHHHHhh--HhhhH-----H--hhhHHHHHHHHHHHHHHHHHHHHh
Q 018388          140 RQRASAFGILLGVLSASFVCG--TLAAR-----F--LSTTSAFQAATIVSMLAAAYMRVF  190 (357)
Q Consensus       140 ~~r~~~~~~~~~~~~~g~~~g--~~~~~-----~--l~~~~~f~~~~~~~~~~~~~~~~~  190 (357)
                      |+|+........+.++|.++.  |.+-+     .  -.|++.+.+.+++.++.+++..++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            566777777777778887654  43322     1  279999888888766665554443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=94.43  E-value=0.11  Score=47.21  Aligned_cols=82  Identities=16%  Similarity=0.199  Sum_probs=64.2

Q ss_pred             chHHHHHHHHHHHHhhhhhhHHHHHhhhh--hcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccch-hHHHHHHHHHH
Q 018388          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKA--QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE-AKLLSLGLFAA  323 (357)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~  323 (357)
                      .++...+..++.......+.+..-.|+++  . +-+.+..|+..+...++..+.+ +..++..+|.+. |+-++.+.++.
T Consensus        35 si~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~-~A~~~ffG~viaa~slg~~i~~-liF~~Ws~k~~~~k~Pli~s~ii~  112 (488)
T KOG2325|consen   35 SIYLALLNSFLVAVQFSIYLTSMWPYLQKLDP-TATATFFGLVIAASSLGHAIFS-LIFGIWSNKTGSVKKPLIVSFLIA  112 (488)
T ss_pred             hHHHHHHHHHHHhhhheEEEeecchhhhhcCC-CCCcchhhHHHHHHHHHHHhcc-hhhcccccccCCcccCHHHHHHHH
Confidence            44556666666666666666666667776  4 7777888999999999999999 677888888775 88899999999


Q ss_pred             HHHHHHH
Q 018388          324 CINMFIC  330 (357)
Q Consensus       324 ~i~~~~~  330 (357)
                      .++.++.
T Consensus       113 ~~g~llY  119 (488)
T KOG2325|consen  113 IIGNLLY  119 (488)
T ss_pred             HHHHHHH
Confidence            9998777

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=94.31  E-value=3.1  Score=35.82  Aligned_cols=72  Identities=14%  Similarity=0.021  Sum_probs=48.9

Q ss_pred             HHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCC
Q 018388           61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI  137 (357)
Q Consensus        61 ~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~  137 (357)
                      .+.....+++.+.+..++|-|..+.++...+.....    .+-.+.+..++..-...|+ +.+..+..--+|+++.-
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA----~Nl~pr~~tlVPa~~~~G~-aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA----ANLEPRYETLVPAGLVLGM-AAGPIWASKGTYLTPMG  139 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hhcchhHHhhccHHHhhcc-ccccccccCcceecHHH
Confidence            444566667777899999999999888776644322    2222226778888899999 77777665555555443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=94.25  E-value=0.8  Score=34.94  Aligned_cols=65  Identities=18%  Similarity=0.143  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCcchHHHH-HHHHHHhhhccccc
Q 018388          289 LIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATPS  355 (357)
Q Consensus       289 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~  355 (357)
                      ++......+.. ++.+.+.+++|.|+.++++.+...+-.... +.++.+..+. ..+.|++.+....+
T Consensus        44 ai~Y~~~~~s~-l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~a  109 (156)
T PF05978_consen   44 AILYGSFAISC-LFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTA  109 (156)
T ss_pred             HHHHHHHHHHH-HhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHh
Confidence            33444445555 778899999999999999998887655444 3444455555 56778887766543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.20  E-value=3.9  Score=36.45  Aligned_cols=112  Identities=10%  Similarity=0.011  Sum_probs=53.2

Q ss_pred             HHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHc
Q 018388           22 FATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR  101 (357)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~  101 (357)
                      ..+++....-+++.++.-+.+.     +.......+....+..++....=-.+.-|. |+++.........+....+.++
T Consensus        32 lpWN~fiTa~~y~~~~~~~~~~-----~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~il~i~~l~~~  105 (406)
T KOG1479|consen   32 LPWNMFITASDYYYYRFPGYHN-----SKNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAILFIVTLDLA  105 (406)
T ss_pred             cchHhhhccHHHHHhhcCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            3346666777777665321111     445555656666666666666666666662 2222221111112222222222


Q ss_pred             c--c----hhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccc
Q 018388          102 R--S----ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ  141 (357)
Q Consensus       102 ~--~----~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~  141 (357)
                      .  +    ...++..++.-.+.+. +.+..+...+...++ .|+|.
T Consensus       106 ~v~~~~~~~~ff~vt~~~vv~~~~-a~a~~qgs~~G~a~~-~P~~y  149 (406)
T KOG1479|consen  106 LVKTDTWTNGFFLVTLIIVVLLNL-ANAVVQGSLYGLAGL-FPSEY  149 (406)
T ss_pred             hhccCCccchhHHHHHHHHHHHhh-hhhhhccchhhhhhc-CCHHH
Confidence            1  1    1124455555666666 555555445555554 45443

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=93.33  E-value=4.1  Score=33.85  Aligned_cols=42  Identities=7%  Similarity=-0.160  Sum_probs=21.7

Q ss_pred             HHHhhhhhhHHHHHhhhhhc----ccCcchHHHHHHHHHHHHHHHH
Q 018388          258 SGLSEGGMQASFLYFLKAQF----HFNKNQFADLMLIAGLAGTISQ  299 (357)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~  299 (357)
                      .....++.+..=..|.+++-    +-+.....++++-.........
T Consensus       190 ~aGvlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~GIfltSt  235 (254)
T PF07857_consen  190 FAGVLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFSGIFLTST  235 (254)
T ss_pred             HHHHHHhcccchHHHHHhCccccCCCCCcchheeHHHHhhHHHHHH
Confidence            33444444444445777763    3455555666655544444444

The region concerned is approximately 280 residues long.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=91.78  E-value=4  Score=36.62  Aligned_cols=98  Identities=21%  Similarity=0.178  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHH--HHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHH
Q 018388           52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL--TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLA  129 (357)
Q Consensus        52 ~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~  129 (357)
                      ..|.+.++..+...++++..|.+..++.+-.-+.++.  ++.+...++++..++   .|..+++.++.+. ......+.+
T Consensus       286 YNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~---Iwv~Y~~yIif~~-~y~fliTiA  361 (412)
T PF01770_consen  286 YNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGN---IWVCYAGYIIFRS-LYMFLITIA  361 (412)
T ss_pred             cchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHH-HHHHHHHHH
Confidence            4588888899999999999999988887755444433  344455566677778   8888888887776 445555777


Q ss_pred             HHHHhhCCCccchhHHHHHHHHHH
Q 018388          130 LAYVADNISERQRASAFGILLGVL  153 (357)
Q Consensus       130 ~~~i~~~~~~~~r~~~~~~~~~~~  153 (357)
                      ..-++....+|.-+..+|++....
T Consensus       362 ~~qIA~~l~~e~yaLVFGiNtf~A  385 (412)
T PF01770_consen  362 SFQIAKNLSEERYALVFGINTFVA  385 (412)
T ss_pred             HHHHHHhccccceeeeeeeHHHHH
Confidence            777888888788787777765543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.44  E-value=2.1  Score=38.02  Aligned_cols=133  Identities=12%  Similarity=0.154  Sum_probs=85.9

Q ss_pred             HhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccc
Q 018388           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAI-IGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS  103 (357)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~-~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~  103 (357)
                      .+...+.|.+..+..    ++...+.+..-+...+ +.+...+|.+.+.++-++-  +|.+.+..++-.+..-++.+++.
T Consensus       260 ~VTLsiFPg~~~~~~----~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~--~r~l~i~v~lR~lfiPlF~~cn~  333 (406)
T KOG1479|consen  260 FVTLSIFPGFCSEVK----SSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD--PRKLTIPVLLRLLFIPLFLLCNY  333 (406)
T ss_pred             eeeeEecchhhcccc----cCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC--CceehHHHHHHHHHHHHHHHhcc
Confidence            334456777776521    1222244555666666 8888888877776665543  33333444443333333332211


Q ss_pred             ------hhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh
Q 018388          104 ------ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (357)
Q Consensus       104 ------~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  164 (357)
                            +..-++++....+.|+ ..|-.......+..+.++++++..+-.+.......|...|..++
T Consensus       334 ~~~~v~~~~~~~~~~l~~~lgl-snGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  334 PPLPVVFESDGWFIFLMSLLGL-SNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             CCCCceecCchHHHHHHHHHHh-ccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence                  1114677888889999 88888888999999999999998888888888888887776554

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=91.30  E-value=0.87  Score=40.93  Aligned_cols=123  Identities=10%  Similarity=0.075  Sum_probs=73.8

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccc-----hhHHHHH-----HHHHHHHHHHHHHHHHhhhhhhh
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDEC-----SLAIYLS-----GFQQAIIGLGTLVMMPVIGNLSD   76 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~-----g~~~~~~~~~~~i~~~~~G~l~d   76 (357)
                      +|....+++...+..++..-..-...+++-+.+..++.+.     ..-.+..     .|-..++.+...+.+...-++.|
T Consensus       278 pr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~~l~~  357 (498)
T KOG0637|consen  278 PRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVEKLSR  357 (498)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666666655444444444433221121111     1111111     24556778888899999999999


Q ss_pred             hcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHH
Q 018388           77 QYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV  133 (357)
Q Consensus        77 r~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i  133 (357)
                      |+|-|+.+..+...+.++..+.+..++   .+....-+-..|+ -.+....+-+..+
T Consensus       358 ~~g~r~~y~~~~~~f~~~~~~~gl~~~---~~~~~~~~~~~G~-~~~~~~~~p~~l~  410 (498)
T KOG0637|consen  358 KFGTRKRYWGGVNAFGLATGLAGLVLN---TYVVLSHRSTAGI-LSSPLLTVPYGAL  410 (498)
T ss_pred             hcCcceEEeehhHHHHHHHHHHhhhhh---HHHHHHHHhhcce-eecchhcccHHHH
Confidence            999777777777767777777777777   6667777777776 3344333433333

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=90.90  E-value=3.5  Score=34.70  Aligned_cols=74  Identities=18%  Similarity=0.221  Sum_probs=50.4

Q ss_pred             HhhhhhhHHHHHhhhhhcccCc--chHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCc
Q 018388          260 LSEGGMQASFLYFLKAQFHFNK--NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWS  335 (357)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  335 (357)
                      ..........+.+..+. +.+.  ...+...........++. +..|++.||.|||+.+..+......+.+...+..+
T Consensus        16 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~   91 (338)
T COG0477          16 LDLGLLSPALPLLLSTL-SLSSGRLLYGLLLSAFFLGYAIGS-LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN   91 (338)
T ss_pred             HhcchHHHHHHHHHHHc-CCCchhHHHHHHHHHHHHHHHHHh-hhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc
Confidence            33444455566666654 4444  356888888888888887 88899999999998777777654555455555544

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=89.39  E-value=7.6  Score=34.28  Aligned_cols=78  Identities=18%  Similarity=0.211  Sum_probs=53.3

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      +..+.+..+.++...+.-+-......++.+.-   ...    ......-..+-....++..++.|.+.|+..|+|++...
T Consensus        27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~---gns----l~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~   99 (503)
T KOG2601|consen   27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILLG---GNS----LLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTW   99 (503)
T ss_pred             ceeehhhHHHHHhHhhHhHHHHHHHHHHHHHc---Cce----ehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHH
Confidence            34566788888888888777777777765531   111    12334444455666788899999999999999988866


Q ss_pred             HHHHH
Q 018388           88 LTLSI   92 (357)
Q Consensus        88 ~~~~~   92 (357)
                      +++.-
T Consensus       100 L~lqN  104 (503)
T KOG2601|consen  100 LLLQN  104 (503)
T ss_pred             Hhhcc
Confidence            65443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=88.04  E-value=2.8  Score=35.84  Aligned_cols=73  Identities=15%  Similarity=0.079  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      +..+......+.++   +|..++.-+..|+ -+|..+...+--+.+-.++++|..+++....+-++|..++..++-.
T Consensus       328 ~ff~~~a~~~ftps---i~ivf~lI~~EGL-lGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalp  400 (409)
T KOG3880|consen  328 LFFLLQAWYWFTPS---IWIVFALILFEGL-LGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALP  400 (409)
T ss_pred             HHHHHHHHHHhccH---HHHHHHHHHHHhh-cCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhcc
Confidence            33444556667788   8888888899999 4455556677777777888999999999999999998887766543

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=87.33  E-value=0.22  Score=42.99  Aligned_cols=108  Identities=14%  Similarity=0.114  Sum_probs=3.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhh-cCcchhhhHHHHHHHHH---HHHHHHccc-------hhHHHHHHHHHHHhhhcccc
Q 018388           55 FQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIP---LAILAYRRS-------ISFFYAYYALRTLTAMVCEG  123 (357)
Q Consensus        55 ~~~~~~~~~~~i~~~~~G~l~dr-~Grk~~l~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~r~l~G~~~~~  123 (357)
                      ....++.++..+|....++.-=+ -.+|++.. ..+.-.+.   .++|-.-++       ...-+..++.-++.|+ ..|
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~-TNG  263 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGF-TNG  263 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHH-ccc
Confidence            45667888888888877653211 12444433 32222222   222211111       0113566778888999 778


Q ss_pred             hHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh
Q 018388          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (357)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  164 (357)
                      ...+....+..+..++++|..+-.+...+..+|..+|..++
T Consensus       264 yl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  264 YLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             ---HHHH----------------------------------
T ss_pred             hhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999998888888888888887654

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.15  E-value=0.15  Score=41.86  Aligned_cols=57  Identities=21%  Similarity=0.183  Sum_probs=39.7

Q ss_pred             hcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHH
Q 018388          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQ  299 (357)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  299 (357)
                      +++-.+....+.+.+.-........+++.|..+..+++....+++-.+..+.....+
T Consensus       198 F~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS  254 (412)
T KOG4830|consen  198 FGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVS  254 (412)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHH
Confidence            345556666777777777777778889999888778777666666666655555444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=86.61  E-value=0.21  Score=46.79  Aligned_cols=79  Identities=11%  Similarity=0.231  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHH
Q 018388          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICS  331 (357)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  331 (357)
                      .+..+.+ ....++....-.-++++|++++.+.|.+.+.+-++..+.. ++..++.+|..|.+.+-.|.++.+++.++++
T Consensus         9 ~~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~-~~vsy~g~~~hrprwig~g~~~~~~g~~l~~   86 (539)
T PF03137_consen    9 CLLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVV-LFVSYFGGRGHRPRWIGIGALLMGLGSLLFA   86 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence            3333444 4444444444456778899999999999999999999988 6667888888888888999999999988776


Q ss_pred             h
Q 018388          332 I  332 (357)
Q Consensus       332 ~  332 (357)
                      +
T Consensus        87 l   87 (539)
T PF03137_consen   87 L   87 (539)
T ss_dssp             -
T ss_pred             c
Confidence            5

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=82.83  E-value=22  Score=29.45  Aligned_cols=24  Identities=17%  Similarity=0.032  Sum_probs=14.8

Q ss_pred             HhhhhhccchhHHHHHHHHHHHHH
Q 018388          303 MPLLAPILGEAKLLSLGLFAACIN  326 (357)
Q Consensus       303 ~~~l~~~~~~~~~~~~~~~~~~i~  326 (357)
                      +.++..|+..|++.+.+..+..+.
T Consensus       260 Gk~lAskIS~rtVt~~ggi~Fi~F  283 (294)
T KOG2881|consen  260 GKYLASKISVRTVTLIGGILFIIF  283 (294)
T ss_pred             hHHHhhhheeEEEEEecchhHHHH
Confidence            345677888777766665554433

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=81.93  E-value=36  Score=30.04  Aligned_cols=100  Identities=22%  Similarity=0.144  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHH--HHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHH
Q 018388           51 YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT--LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL  128 (357)
Q Consensus        51 ~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~  128 (357)
                      ...|..-++..+..++.++..|.+.-++.|..-++++..  ..+...+++..+++   +|..+++.++... .-....+.
T Consensus       271 vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~---Iw~~Ya~yvlfr~-~y~l~iti  346 (433)
T KOG3810|consen  271 VYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQH---IWVCYAGYVLFRV-IYQLTITI  346 (433)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccc---eehhhhhHHHHHh-hHhhhhhH
Confidence            345777788888889999999999999888755444443  33444445555666   6766666666655 44445577


Q ss_pred             HHHHHhhCCCccchhHHHHHHHHHHH
Q 018388          129 ALAYVADNISERQRASAFGILLGVLS  154 (357)
Q Consensus       129 ~~~~i~~~~~~~~r~~~~~~~~~~~~  154 (357)
                      +..-+++...+|.-|..+|+.....-
T Consensus       347 A~~~iA~nL~~e~~gLvFGiNTFvAl  372 (433)
T KOG3810|consen  347 ATFQIARNLSSELFGLVFGINTFVAL  372 (433)
T ss_pred             HHHHHHHhhhhhhheeeeehHHHHHH
Confidence            88888888888888888888765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	357
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 31/144 (21%)

Query: 8   KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGL--DECSLAIYLSGFQQAIIGLGTL 65
           K L    +T         +     T +++      L  DE   ++ L         L   
Sbjct: 267 KIL----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDL--- 318

Query: 66  VMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI 125
              P          R+ + T P  LSII    +    +    + +     LT ++ E S+
Sbjct: 319 ---P----------REVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTII-ESSL 363

Query: 126 NCLALAYVADNISERQRASAFGIL 149
           N L      +    R+      + 
Sbjct: 364 NVL------EPAEYRKMFDRLSVF 381

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 34/191 (17%), Positives = 56/191 (29%), Gaps = 53/191 (27%)

Query: 109 AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS 168
               LR L  +  +   NCL L  V  N+   +  +AF            C     + L 
Sbjct: 230 IQAELRRL--LKSKPYENCL-L--VLLNVQNAKAWNAFN---------LSC-----KILL 270

Query: 169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEG-----VNQNESNSP 223
           TT   Q    +S  AA    + L     +     LT     +E +      ++    + P
Sbjct: 271 TTRFKQVTDFLS--AATTTHISL-----DHHSMTLT----PDEVKSLLLKYLDCRPQDLP 319

Query: 224 VKIPVCKKIP--------SIRDLICLLR--SSVTLSQ--AAVVAFFSGLSEGGMQASFLY 271
            +  V    P        SIRD +        V   +    + +  + L     +  F  
Sbjct: 320 RE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377

Query: 272 FLKAQFHFNKN 282
                  F  +
Sbjct: 378 L----SVFPPS 384

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	357
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.97
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.96
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.93
2xut_A	524	Proton/peptide symporter family protein; transport	99.91
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.56
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.52
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.4
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.36
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.35
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.03
2xut_A	524	Proton/peptide symporter family protein; transport	98.55

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=2.2e-33  Score=253.42  Aligned_cols=306  Identities=14%  Similarity=0.100  Sum_probs=247.5

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      +.+..+....++..++.....+.+|.+.++        ++.+..+.|++.+.+.++..++.+++|+++||+|||++++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~   97 (438)
T 3o7q_A           26 IPFALLCSLFFLWAVANNLNDILLPQFQQA--------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG   97 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Confidence            345566677777888888888999987664        345556789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH---HHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhh
Q 018388           88 LTLSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (357)
Q Consensus        88 ~~~~~~~~~~~---~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  164 (357)
                      .++.+++.+++   .++++   ++.++++|+++|+ +.+...+...+++.|++|+|+|++++++.+...++|..+||.++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  173 (438)
T 3o7q_A           98 LFLYALGAALFWPAAEIMN---YTLFLVGLFIIAA-GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcccccc---HHHHHHHHHHHHh-hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999   88889   9999999999999 77888899999999999999999999999999999999999998


Q ss_pred             HHhh------------------------------hHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCCCCCCCccccccccc
Q 018388          165 RFLS------------------------------TTSAFQAATIVSMLAAAYMRVF-LKDDVPNDDDDDLTRPIITEETE  213 (357)
Q Consensus       165 ~~l~------------------------------~~~~f~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~  213 (357)
                      +.+.                              ||+.|++.+.+..+..++.++. .||++++++++            
T Consensus       174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------------  241 (438)
T 3o7q_A          174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD------------  241 (438)
T ss_dssp             THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC------------
T ss_pred             HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc------------
Confidence            8764                              9999988877755554443331 23332211110            


Q ss_pred             ccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHh-hhhhcccCcchHHHHHHHHH
Q 018388          214 GVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYF-LKAQFHFNKNQFADLMLIAG  292 (357)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~  292 (357)
                                     +++ .+.++..+.++++|.++...+..++..........++|.| +++.+|.++.+.+...+...
T Consensus       242 ---------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  305 (438)
T 3o7q_A          242 ---------------AKQ-GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM  305 (438)
T ss_dssp             ---------------SST-TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             ---------------ccc-cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHH
Confidence                           000 1112223335668899998888888888888899999999 89888999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhcccc
Q 018388          293 LAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFATP  354 (357)
Q Consensus       293 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  354 (357)
                      ++..++. ++.+++.||+++|+.+..+..+..++.+++.+.++.+..+...+.+++.+...|
T Consensus       306 ~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  366 (438)
T 3o7q_A          306 VCFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYP  366 (438)
T ss_dssp             HHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence            9999988 889999999999999999999998888888887766555555566666665554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=1.5e-32  Score=248.87  Aligned_cols=302  Identities=12%  Similarity=0.084  Sum_probs=237.3

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      +.+....+..+...++.....+.+|.+.+        ++ .+..+.|++.+++.++..++.+++|+++||+|||++++.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~   98 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVE--------QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   98 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTS--------ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence            34556677777778888888888887754        33 4555679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH----ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhh
Q 018388           88 LTLSIIPLAILAY----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (357)
Q Consensus        88 ~~~~~~~~~~~~~----~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  163 (357)
                      .++.+++.+++++    +++   ++.++++|+++|+ +.+...+...+++.|++|+|+|++++++.+....+|..+||.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~-~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  174 (451)
T 1pw4_A           99 LILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGW-FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL  174 (451)
T ss_dssp             HHHHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHH-HHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHH-HhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999    888   8888999999999 7777889999999999999999999999999999999999999


Q ss_pred             hHHh----h-hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHH
Q 018388          164 ARFL----S-TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (357)
Q Consensus       164 ~~~l----~-~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (357)
                      ++.+    + ||+.|++.+++.++..++.++.+||++++.+.+.+.+...       +.++ +.+.+   .++..+.++.
T Consensus       175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~---~~~~~~~~~~  243 (451)
T 1pw4_A          175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-------DYPD-DYNEK---AEQELTAKQI  243 (451)
T ss_dssp             HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-------C-----------------CCTHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc-------cccc-cchhh---hhcccccccc
Confidence            8874    6 9999999998877777777777888765543221110000       0000 00000   0001111221


Q ss_pred             -HHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhcc--chhHH
Q 018388          239 -ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKL  315 (357)
Q Consensus       239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~  315 (357)
                       .+...++|.++...+..++..........++|.|+++.+|+++.+.+...+...++.+++. ++.+++.||+  ++|+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~  322 (451)
T 1pw4_A          244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGA  322 (451)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHH
T ss_pred             hHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchh
Confidence             2335668889999999999888889999999999999889999999999999999999988 8889999999  99988


Q ss_pred             HHHHHHHHH-HHHHHHHhcC
Q 018388          316 LSLGLFAAC-INMFICSISW  334 (357)
Q Consensus       316 ~~~~~~~~~-i~~~~~~~~~  334 (357)
                      +..+..+.. ++++++.+.+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~  342 (451)
T 1pw4_A          323 TGVFFMTLVTIATIVYWMNP  342 (451)
T ss_dssp             HHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            877776666 6666665553

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.97  E-value=5.4e-31  Score=232.95  Aligned_cols=299  Identities=13%  Similarity=0.101  Sum_probs=233.4

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHH
Q 018388           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (357)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~   90 (357)
                      ..+....++..++.....|.+|.+.+        +++.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   74 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMAR--------DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI   74 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT--------TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHH--------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            45677778888899999999998764        4566667889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh---
Q 018388           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---  167 (357)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l---  167 (357)
                      ..++..+..++++   ++.+++.|+++|+ +.+...+...+++.|+.|+|+|+++++..+....+|..+||.+++.+   
T Consensus        75 ~~~~~~~~~~~~~---~~~l~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  150 (375)
T 2gfp_A           75 FMLATLVAVTTSS---LTVLIAASAMQGM-GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM  150 (375)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             HHHHHHHHHHhcc---HHHHHHHHHHHHH-HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            9999999999988   8999999999999 77888899999999999999999999999999999999999999875   


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhccc
Q 018388          168 -STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV  246 (357)
Q Consensus       168 -~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (357)
                       +||+.|++.+++..+..+...+.+||++++++++                           ++..++.++    ..++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~----~~~~~  199 (375)
T 2gfp_A          151 WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR---------------------------TRLLTSYKT----LFGNS  199 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC---------------------------CCTTTCSTH----HHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc---------------------------ccHHHHHHH----HhcCc
Confidence             8999999988886666554556677765432221                           000111222    33467


Q ss_pred             chHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHH-HHH
Q 018388          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA-ACI  325 (357)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~i  325 (357)
                      +++...+..++..........+.|.|.++.+|.++.+.+.......++..++. ++.+++.||.+++  ...+... ...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~r~~~~--~~~~~~~~~~~  276 (375)
T 2gfp_A          200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTL--MWQSVICCLLA  276 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHH-HHHHTTTTHHHHH--HHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            78888888888888888899999999999789999999999999999999988 8889999998873  2233322 222


Q ss_pred             HHH--HHHh--cCcchHHHH-HHHHHHhhhccccc
Q 018388          326 NMF--ICSI--SWSAWVPYA-TTAFSVLVVFATPS  355 (357)
Q Consensus       326 ~~~--~~~~--~~~~~~~~~-~~~~~~~~~~~~p~  355 (357)
                      +..  ....  .++.+..+. ..+.+++.+...|.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  311 (375)
T 2gfp_A          277 GLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPL  311 (375)
T ss_dssp             SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred             HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHH
Confidence            222  2222  123333333 45567777766664

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.97  E-value=1.2e-29  Score=232.27  Aligned_cols=311  Identities=13%  Similarity=0.093  Sum_probs=211.4

Q ss_pred             HHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHH
Q 018388           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIP   94 (357)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~   94 (357)
                      ++.++.+++.+++.+.+|.+.++...+.+.+.+.+..+.|++.+.+.++..++++++|+++||+|||++++++.++..++
T Consensus        19 lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~   98 (491)
T 4gc0_A           19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS   98 (491)
T ss_dssp             HHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            44566777788888888888777544444455677788899999999999999999999999999999999999999999


Q ss_pred             HHHHHH------------------ccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHH
Q 018388           95 LAILAY------------------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (357)
Q Consensus        95 ~~~~~~------------------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  156 (357)
                      .+++++                  ++|   ++.++++|+++|+ +.|...+....+++|+.|+++|++..+..+.+...|
T Consensus        99 ~i~~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G~-g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g  174 (491)
T 4gc0_A           99 GVGSAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGGI-GVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG  174 (491)
T ss_dssp             HHHHHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHHH-HHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence            999884                  677   8999999999999 778888999999999999999999999999999999


Q ss_pred             HHhhHhhhHHh------------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCC
Q 018388          157 FVCGTLAARFL------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPV  224 (357)
Q Consensus       157 ~~~g~~~~~~l------------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (357)
                      ..+++.++...            .||+.+.+..+..++. +...+..||+|+....+.+.++..+..++...++..++..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~  253 (491)
T 4gc0_A          175 QLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV  253 (491)
T ss_dssp             HHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence            99988777543            4677777766664444 4445678999875332222111111110000000000000


Q ss_pred             CccccccchhHHH-HHHhhhcccchHHHHHHHHHHHH-hhhhhhHHHHHhhhhhcccCcchHHHHHHHHHHHHHHHHHHH
Q 018388          225 KIPVCKKIPSIRD-LICLLRSSVTLSQAAVVAFFSGL-SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF  302 (357)
Q Consensus       225 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  302 (357)
                      .+.........+. .....++.+..........+... .......+.|.+.++ .+.+...........++...++. ++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~  331 (491)
T 4gc0_A          254 QEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGASTDIALLQTIIVGVINLTFT-VL  331 (491)
T ss_dssp             HHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCCccchhhHHHHHHHHHHHHH-HH
Confidence            0000000000000 01112223333333333333333 333444555555554 47777666666777777777777 88


Q ss_pred             HhhhhhccchhHHHHHHHHHHHHHHHHHHh
Q 018388          303 MPLLAPILGEAKLLSLGLFAACINMFICSI  332 (357)
Q Consensus       303 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  332 (357)
                      ++++.||+|||+.+..+.....++.+.+..
T Consensus       332 ~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~  361 (491)
T 4gc0_A          332 AIMTVDKFGRKPLQIIGALGMAIGMFSLGT  361 (491)
T ss_dssp             HHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence            899999999999999888888877665543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.96  E-value=5.5e-28  Score=221.32  Aligned_cols=341  Identities=13%  Similarity=0.008  Sum_probs=231.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-cCcchhhh
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLT   85 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~Grk~~l~   85 (357)
                      ++.++.+....+...++.....+.++.+.++..  ..++++.+..+.|++.+.+.++..+++++.|+++|| +|||+++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~   89 (491)
T 4aps_A           12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLI--STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF   89 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            456777788888888888888888888887631  123467788889999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccc--hhHHHHHHHHHHHHHHHhhHhh
Q 018388           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ--RASAFGILLGVLSASFVCGTLA  163 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~  163 (357)
                      .+.++..++.++++++++   ++.++++|+++|+ +.+...+...+++.|++|+++  |+++++..+...++|..+||.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  165 (491)
T 4aps_A           90 WGGVLIMLGHIVLALPFG---ASALFGSIILIII-GTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI  165 (491)
T ss_dssp             HHHHHHHHHHHHHHSCCS---TTHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHH-HHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence            999999999999999999   8888999999999 778888999999999999988  7778888999999999999999


Q ss_pred             hHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccccccccccccc----------------CCCCCC
Q 018388          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQ----------------NESNSP  223 (357)
Q Consensus       164 ~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~  223 (357)
                      ++.+    +||+.|++.++..++..+...+..|+..++++++.+.+...+..++..+.                ..+..+
T Consensus       166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~  245 (491)
T 4aps_A          166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS  245 (491)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            8875    89999999877766655554444344322221111100000000000000                000000


Q ss_pred             CCcccc----------------ccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcccCcchHHHH
Q 018388          224 VKIPVC----------------KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADL  287 (357)
Q Consensus       224 ~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  287 (357)
                      .++...                ..++...+ .+..++........+..+...........++|.|.++..+.+..+.+..
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (491)
T 4aps_A          246 LPAYINLLTIVAIAIPVFYFAWMISSVKVT-STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWF  324 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGG
T ss_pred             cccchhhhhHHHHHHHHHHHHHHhhccccc-HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHH
Confidence            000000                00000000 0001112234455556666667777778889999998888886677888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccchhHHHH-----HHHHHHHHHHHHHHhcC---------cchHHHH-HHHHHHhhhcc
Q 018388          288 MLIAGLAGTISQLLFMPLLAPILGEAKLLS-----LGLFAACINMFICSISW---------SAWVPYA-TTAFSVLVVFA  352 (357)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~  352 (357)
                      .....+...++. .+.+++.||++||+...     .+..+.+++++++....         +.+.... ..+.+++.+..
T Consensus       325 ~~~~~~~~~~~~-~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  403 (491)
T 4aps_A          325 QSLNPLFIMLYT-PFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLI  403 (491)
T ss_dssp             TTHHHHHHHHHH-HHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTT
T ss_pred             hccchHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            888888888888 77799999999876544     67777777765555421         3333333 45567776665


Q ss_pred             ccc
Q 018388          353 TPS  355 (357)
Q Consensus       353 ~p~  355 (357)
                      .|.
T Consensus       404 ~~~  406 (491)
T 4aps_A          404 SPV  406 (491)
T ss_dssp             TTH
T ss_pred             hHH
Confidence            553

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.93  E-value=8.9e-26  Score=202.26  Aligned_cols=299  Identities=17%  Similarity=0.143  Sum_probs=189.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      +|+++.+....++...+.....|.+|.++++.       .+.+..+.|++.+.+.++..++++++|+++||+|||++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~   78 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDI-------NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW   78 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTT-------TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            45666777777788888888899999998752       33444556999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHH---HHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCc--cchhHHHHHHHHHHHHHHHhhH
Q 018388           87 PLTLSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE--RQRASAFGILLGVLSASFVCGT  161 (357)
Q Consensus        87 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~  161 (357)
                      +..+..+.....   .+++..  ...+...+.+.|+ ..+...+.....+.++.++  ++|+...+.......+|..++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~  155 (417)
T 2cfq_A           79 IITGMLVMFAPFFIFIFGPLL--QYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA  155 (417)
T ss_dssp             HHHHTTSCHHHHHHHTHHHHH--HTTCCHHHHGGGS-STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Confidence            887765432111   222210  0112345566565 4344333333444444332  3556667777777888999999


Q ss_pred             hhhHHh---hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHH
Q 018388          162 LAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (357)
Q Consensus       162 ~~~~~l---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (357)
                      .+++++   +||+.|++.++..++..+. .+..||+++++.++.             +.++++        +++.+.++.
T Consensus       156 ~l~~~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------------~~~~~~--------~~~~~~~~~  213 (417)
T 2cfq_A          156 SIVGIMFTINNQFVFWLGSGCALILAVL-LFFAKTDAPSSATVA-------------NAVGAN--------HSAFSLKLA  213 (417)
T ss_dssp             HHHHHHHHHCSHHHHTTTTTTTTTHHHH-SCSSCCCCSCSSCSS-------------SSSSSC--------CCCCCHHHH
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHHHHHH-HHHcCcccccccccc-------------cccccc--------cccccHHHH
Confidence            888875   6899998776664433333 333333221111100             000000        001122232


Q ss_pred             HHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcc---cCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHH
Q 018388          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH---FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (357)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  315 (357)
                      .+ +.++|+++...+..+.....+.....++|.|+++.++   .+....+...+...+...++. ++.+++.||+++|+.
T Consensus       214 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~  291 (417)
T 2cfq_A          214 LE-LFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIGGKNA  291 (417)
T ss_dssp             HH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHH
T ss_pred             HH-HhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcHHHH
Confidence            22 3446777666665555555555666778888876654   234455777777777777777 888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCcchHH
Q 018388          316 LSLGLFAACINMFICSISWSAWVP  339 (357)
Q Consensus       316 ~~~~~~~~~i~~~~~~~~~~~~~~  339 (357)
                      +..+..+.+++.+.+.+.++.+..
T Consensus       292 l~~~~~~~~~~~~~~~~~~~~~~~  315 (417)
T 2cfq_A          292 LLLAGTIMSVRIIGSSFATSALEV  315 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHH
Confidence            988888888877666666554443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.91  E-value=2.3e-23  Score=192.23  Aligned_cols=178  Identities=15%  Similarity=0.148  Sum_probs=147.4

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-Ccchhh
Q 018388            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAML   84 (357)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-Grk~~l   84 (357)
                      +++.++.+.+..++..++.....+.++.++.+..+++ .+.+.+..+.|++.+++.++..++.++.|+++||+ |||+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~   88 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLS-IPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI   88 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC-CSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            3556778888888898988888889998887633211 01225566779999999999999999999999999 999999


Q ss_pred             hHHHHHHHHHHHHHHHcc-chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHH---HHHHHHHHHHhh
Q 018388           85 TLPLTLSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI---LLGVLSASFVCG  160 (357)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g  160 (357)
                      ..+.++..++.+++.+++ +   ++.+++.|++.|+ +.+...+...+++.|++|+++|+++.+.   .+...++|..+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g  164 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIFEHS---VQGFYTGLFLIAL-GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA  164 (524)
T ss_dssp             HHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHH-HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHH-hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998 8   8889999999999 7677789999999999999999876666   888999999999


Q ss_pred             HhhhHHh----hhHHHHHHHHHHHHHHHHHHH
Q 018388          161 TLAARFL----STTSAFQAATIVSMLAAAYMR  188 (357)
Q Consensus       161 ~~~~~~l----~~~~~f~~~~~~~~~~~~~~~  188 (357)
                      |.+++.+    +||+.|++.+++.++..+...
T Consensus       165 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          165 SLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            9988765    799999998877665544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.56  E-value=1.3e-13  Score=123.11  Aligned_cols=166  Identities=12%  Similarity=0.069  Sum_probs=123.5

Q ss_pred             HHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHcc
Q 018388           23 ATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR  102 (357)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~  102 (357)
                      ........+|.+..+..    .+.+.+....|+..++..++..++.++.|+++||+|||+.+..+.++.+++....++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~  310 (417)
T 2cfq_A          235 TYDVFDQQFANFFTSFF----ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHTS----SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHH----hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333344677765532    11233344568888888888899999999999999999999988888888777777777


Q ss_pred             chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHH-HHHHHHHHHHhhHhhhHHh----hhHHHHHHHH
Q 018388          103 SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARFL----STTSAFQAAT  177 (357)
Q Consensus       103 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l----~~~~~f~~~~  177 (357)
                      +   .+.+++..++.++ +.+...+....++.|..|+|.|+++.+. .+....+|..+||.++|.+    +++..|.+.+
T Consensus       311 ~---~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~  386 (417)
T 2cfq_A          311 S---ALEVVILKTLHMF-EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             S---HHHHHHHTTHHHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred             c---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence            7   6666777777777 4455556678899999999999999998 4788889999999888865    6777888887


Q ss_pred             HHHHHHHHHHHHhccCCCC
Q 018388          178 IVSMLAAAYMRVFLKDDVP  196 (357)
Q Consensus       178 ~~~~~~~~~~~~~~~e~~~  196 (357)
                      ++.++..+..++..||+++
T Consensus       387 ~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          387 LVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHHHHHHHHhhhcCCCc
Confidence            7767666665555665443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.52  E-value=1.1e-13  Score=124.84  Aligned_cols=174  Identities=10%  Similarity=-0.036  Sum_probs=138.3

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc--Ccchhhh
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAMLT   85 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~--Grk~~l~   85 (357)
                      +.++...+..++...........+|.+.++       ..+.+..+.|++.+...++..++.++.|+++||+  |||+.+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~  324 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKE-------VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  324 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-------BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence            456666777777777777777888888643       3566677889999999999999999999999999  9999988


Q ss_pred             HHHHHHH-HHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHH-HHHhhHhh
Q 018388           86 LPLTLSI-IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGTLA  163 (357)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~  163 (357)
                      .+..+.. ++.++..+.++.+ .+.+.+..++.|+ +.+...+...+++.|..|+++|++++++.+....+ |..++|.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~  402 (451)
T 1pw4_A          325 VFFMTLVTIATIVYWMNPAGN-PTVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI  402 (451)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTC-HHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccC-HHHHHHHHHHHHH-HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            8777666 6666666653211 5666777788888 55666678889999999999999999999999999 99999999


Q ss_pred             hHHh----hhHHHHHHHHHHHHHHHHHHHHh
Q 018388          164 ARFL----STTSAFQAATIVSMLAAAYMRVF  190 (357)
Q Consensus       164 ~~~l----~~~~~f~~~~~~~~~~~~~~~~~  190 (357)
                      .+.+    +|+..|++.+++.++..++.++.
T Consensus       403 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          403 VGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            8875    78889988888766666555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.40  E-value=9.7e-12  Score=111.61  Aligned_cols=160  Identities=8%  Similarity=-0.065  Sum_probs=124.4

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHH-HHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDV-TMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      +.++...+..++...........+|.+ .++       ..+.+..+.|+..+...++..++.++.|+++||+|||+.+..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~  330 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEE-------IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA  330 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            445566666666666677777888888 765       335556778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHH
Q 018388           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (357)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  166 (357)
                      +.++..++.++..+.++   .+... .-++.|+ +.+...+...++..|..|++ |+++.++.. ...+|..++|.+.+.
T Consensus       331 ~~~~~~~~~~~~~~~~~---~~~~~-~~~~~g~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~  403 (438)
T 3o7q_A          331 YALIAMALCLISAFAGG---HVGLI-ALTLCSA-FMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGF  403 (438)
T ss_dssp             HHHHHHHHHHHHHHCCH---HHHHH-HHHHHHH-HHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC---cHHHH-HHHHHHH-HHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHH
Confidence            99999988888888877   44333 3367777 55666788999999999865 888888776 566889999988887


Q ss_pred             h----h-hHHHHHHHHHHHH
Q 018388          167 L----S-TTSAFQAATIVSM  181 (357)
Q Consensus       167 l----~-~~~~f~~~~~~~~  181 (357)
                      +    + ++..|++.++..+
T Consensus       404 l~~~~g~~~~~~~~~~~~~~  423 (438)
T 3o7q_A          404 VSDAAGNIPTAELIPALCFA  423 (438)
T ss_dssp             HHHHHTSSGGGGHHHHHHHH
T ss_pred             HHHHhcchHHHHHHHHHHHH
Confidence            5    5 7778877655433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.36  E-value=3.7e-11  Score=109.51  Aligned_cols=143  Identities=14%  Similarity=0.125  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHc---cchhHHHHHHHHHHHhhhcccchHHHHHH
Q 018388           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR---RSISFFYAYYALRTLTAMVCEGSINCLAL  130 (357)
Q Consensus        54 g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~~~~~~~~~~~~  130 (357)
                      ........+...++.++.+.+.||+|||+.++.+.....++....+..   .+..........-+..++ +.+ ..+...
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~  392 (491)
T 4gc0_A          315 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF-AMS-WGPVCW  392 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HTT-TTHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HhH-HHHHHH
Confidence            444556677888899999999999999999998888777776655432   111111222222222222 222 336788


Q ss_pred             HHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh----------hhHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 018388          131 AYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----------STTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (357)
Q Consensus       131 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l----------~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~  198 (357)
                      .+.+|.+|.+.|++++++......+|..+++.+...+          ++.+.|++.++++++..+..++++||++.+.
T Consensus       393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t  470 (491)
T 4gc0_A          393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT  470 (491)
T ss_dssp             HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred             HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence            8999999999999999999999988888877654432          3456788888888888888889999987654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.35  E-value=4.5e-12  Score=115.62  Aligned_cols=177  Identities=10%  Similarity=0.043  Sum_probs=122.9

Q ss_pred             hHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh-----
Q 018388           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-----   85 (357)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~-----   85 (357)
                      ..+.+..++...........+|.+.++..+.+.       ...++..+...++..++.++.|++.||+|||+...     
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~  358 (491)
T 4aps_A          286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-------FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFA  358 (491)
T ss_dssp             HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-------SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-------cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHH
Confidence            334444555555566666777888876432221       12256666778888899999999999999997665     


Q ss_pred             HHHHHHHHHHHHHHHcc------chhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHh
Q 018388           86 LPLTLSIIPLAILAYRR------SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC  159 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~  159 (357)
                      .+.++..++..+.....      +....+.+.+.-++.|+ +.+...+...+++.|..|+++|+++.++......+|..+
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i  437 (491)
T 4aps_A          359 VGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVIL-GEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL  437 (491)
T ss_dssp             HHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHH-HHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHH-HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777766665532      00115666777888888 656666788999999999999999999999999999999


Q ss_pred             hHhhhHHh---hhHHHHHHHHHHHHHHHHHHHHhccCCC
Q 018388          160 GTLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (357)
Q Consensus       160 g~~~~~~l---~~~~~f~~~~~~~~~~~~~~~~~~~e~~  195 (357)
                      +|.+.+.+   ++.+.|...+.+.++..+..++..|+.+
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (491)
T 4aps_A          438 NAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ  476 (491)
T ss_dssp             HHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998876   4567777777776666666665555543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.03  E-value=3e-10  Score=99.78  Aligned_cols=147  Identities=7%  Similarity=-0.060  Sum_probs=108.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhH
Q 018388            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (357)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~   86 (357)
                      ++.++...+..++............|.+.++       +.+.+..+.|++.+...++..++.++.|++.||+|+|  +..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~  268 (375)
T 2gfp_A          198 NSGFNCYLLMLIGGLAGIAAFEACSGVLMGA-------VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQ  268 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSCSSHH-------HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence            3455566666666666666666677777654       3567778889999999999999999999999999883  233


Q ss_pred             HHHH-HHHHHH--HHHHc--cchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhH
Q 018388           87 PLTL-SIIPLA--ILAYR--RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (357)
Q Consensus        87 ~~~~-~~~~~~--~~~~~--~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~  161 (357)
                      +... ...+..  .....  ++   .+.+.+..++.|+ +.+...+...+++.|..| |+|+++.+..+....+|..++|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~  343 (375)
T 2gfp_A          269 SVICCLLAGLLMWIPDWFGVMN---VWTLLVPAALFFF-GAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLA  343 (375)
T ss_dssp             HHHHHHHTSSSSSHHHHHHHHH---HHHHHHHHHHHHH-HHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHhhhcccc---HHHHHHHHHHHHH-HHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHH
Confidence            3322 222222  12221  23   5666677788888 666777888999999998 8999999999999999999999


Q ss_pred             hhhHHh
Q 018388          162 LAARFL  167 (357)
Q Consensus       162 ~~~~~l  167 (357)
                      .+.+.+
T Consensus       344 ~~~g~l  349 (375)
T 2gfp_A          344 SLSAML  349 (375)
T ss_dssp             TTCTHH
T ss_pred             HHHHHH
Confidence            988876

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.55  E-value=4.4e-07  Score=83.26  Aligned_cols=110  Identities=13%  Similarity=0.006  Sum_probs=92.4

Q ss_pred             ccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhcc------cCcchHHHHHHHHHHHHHHHHHHHHhhhhhcc-chhHHHH
Q 018388          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH------FNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLS  317 (357)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~  317 (357)
                      ++.++...+..++..........+++.|+++.+|      +++.+.+.+.+...++..++. ++.|++.||+ |||+.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP-LLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTH-HHHHHHHTTSSCSHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcchHHHH
Confidence            4567777888888888888899999999998889      999999999999999999988 8889999999 9999999


Q ss_pred             HHHHHHHHHHHHHHhcC-cchHHHH-HHHHHHhhhccccc
Q 018388          318 LGLFAACINMFICSISW-SAWVPYA-TTAFSVLVVFATPS  355 (357)
Q Consensus       318 ~~~~~~~i~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~p~  355 (357)
                      .+..+..++.+++.+.+ +.+.+++ ..+.+++.+...|+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  129 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPL  129 (524)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchh
Confidence            99999999998888887 7666555 45667777766553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	357
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	0.001

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 44/350 (12%), Positives = 110/350 (31%), Gaps = 8/350 (2%)

Query: 4   EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLG 63
            +   T   L   +FL  F        +     +A+ P L E   +    GF  + I + 
Sbjct: 13  AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIA 71

Query: 64  TLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG 123
                 ++G++SD+   +  L   L L+   +  + +    +   A   +        +G
Sbjct: 72  YGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG 131

Query: 124 SINCLALAYVADNISERQRASAFGILLGVLS-ASFVCGTLAARFLSTTSAFQAATIVSML 182
                    +    S+++R     +     +    +   L    ++  + + AA  +   
Sbjct: 132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 191

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
            A  + +F    + +        PI   + +  +     +       +++ + +  +  +
Sbjct: 192 CAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE------QELTAKQIFMQYV 245

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
             +  L   A+   F  L   G+      +LK   HF  ++ +    +   AG    LL 
Sbjct: 246 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLC 305

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVPYATTAFSVLVVFA 352
             +   +    +  +   F   + +       +           ++V+  
Sbjct: 306 GWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 355

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	357
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.93
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.52
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.3

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=8.2e-30  Score=228.15  Aligned_cols=260  Identities=12%  Similarity=0.060  Sum_probs=201.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchh-HHHHHHHHHHHhhhcccch
Q 018388           46 CSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSIS-FFYAYYALRTLTAMVCEGS  124 (357)
Q Consensus        46 ~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~~~~  124 (357)
                      .+++..+.|++.+++.++..++++++|+++||+|||+++..+.++.+++.++++++++.. .++.+++.|++.|+ +.+.
T Consensus        54 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~  132 (447)
T d1pw4a_          54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW-FQGM  132 (447)
T ss_dssp             STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHH-HHHH
T ss_pred             hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHH-hhhh
Confidence            466667789999999999999999999999999999999999999999999888764211 16788999999999 6677


Q ss_pred             HHHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHhhHhhhHHh-----hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 018388          125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (357)
Q Consensus       125 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~  199 (357)
                      ..+...+++.|++|+|+|++++++.+.+..+|..++|.+++..     +||+.|++.+.+..+..++.++..+|++++.+
T Consensus       133 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (447)
T d1pw4a_         133 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCG  212 (447)
T ss_dssp             THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTC
T ss_pred             hhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcc
Confidence            7789999999999999999999999999999999999877663     78999999888877777777777777665443


Q ss_pred             CCCCCcccccccccccccCCCCCCCCccccccchhHHHHHHhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhhhhccc
Q 018388          200 DDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF  279 (357)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  279 (357)
                      ...+.+.          +++.++..++..+++....+...+...+++.++......++..........+.|.|+++.++.
T Consensus       213 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (447)
T d1pw4a_         213 LPPIEEY----------KNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHF  282 (447)
T ss_dssp             CCSCTTT----------CCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC
T ss_pred             cchhhhh----------hhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhccccccc
Confidence            3211100          000000001111111111122234456688888888888888888889999999999999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHHH
Q 018388          280 NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (357)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  317 (357)
                      +..+.+.......+...++. ++.+++.||.++++...
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~  319 (447)
T d1pw4a_         283 ALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGA  319 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHH
T ss_pred             ccchhhhhhhcchhhhhhhh-hhhhhhhhhcccccccc
Confidence            99999999999999999988 88899999998765433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.5e-24  Score=189.46  Aligned_cols=317  Identities=15%  Similarity=0.077  Sum_probs=210.7

Q ss_pred             hhhhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhh
Q 018388            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (357)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~   85 (357)
                      |+|+++.+.+..++..++.+...|.+|.++++       +.+.+..+.|++.+++.++..++++++|+++||+|||++++
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~-------~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~   77 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHD-------INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL   77 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            47788999999999999999999999998875       44667788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHccchhH-HHHHHHHHHHhhhcccchHHHHHHHHHhhCCC--ccchhHHHHHHHHHHHHHHHhhHh
Q 018388           86 LPLTLSIIPLAILAYRRSISF-FYAYYALRTLTAMVCEGSINCLALAYVADNIS--ERQRASAFGILLGVLSASFVCGTL  162 (357)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~  162 (357)
                      .+..+..++..+.....+... ....+..+.+.+. ..+...........+..+  ++++.+..+........+..++|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (417)
T d1pv7a_          78 WIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI-YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             HHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTT-TGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh-cccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccc
Confidence            999998888888887765221 1223455555555 333333333333333333  234555677778888888899998


Q ss_pred             hhHHh---hhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccccccccCCCCCCCCccccccchhHHHHH
Q 018388          163 AARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (357)
Q Consensus       163 ~~~~l---~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (357)
                      +++.+   +|+..+........+..+...+..+|++++++++++.                      +..++.....+..
T Consensus       157 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~  214 (417)
T d1pv7a_         157 IVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV----------------------GANHSAFSLKLAL  214 (417)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH----------------------HSCCCCCCHHHHH
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHhcccccchhhhhhh----------------------hhhcccccccccc
Confidence            88875   5666666666665666666666666665544332100                      0000111111111


Q ss_pred             HhhhcccchHHHHHHHHHHHHhhhhhhHHHHHhhh---hhcccCcchHHHHHHHHHHHHHHHHHHHHhhhhhccchhHHH
Q 018388          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLK---AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (357)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  316 (357)
                      + ..+++..+....................+.+..   +..+.+....+.......++..++. .+.+++.||.++++.+
T Consensus       215 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~r~~~~~~~  292 (417)
T d1pv7a_         215 E-LFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIGGKNAL  292 (417)
T ss_dssp             H-HTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHCHHHHH
T ss_pred             c-ccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccch-hhhhhhhcccccccch
Confidence            1 222333333333333333333333333333322   2224455566777777777777877 8889999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCcchHHHH-HHHHHHhhhcccc
Q 018388          317 SLGLFAACINMFICSISWSAWVPYA-TTAFSVLVVFATP  354 (357)
Q Consensus       317 ~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p  354 (357)
                      ..+..+.+++.+.+.+.++.+..+. ..+.+++.+...|
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  331 (417)
T d1pv7a_         293 LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV  331 (417)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHH
Confidence            9999999999988888888777665 4555666665544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1.5e-13  Score=119.63  Aligned_cols=151  Identities=13%  Similarity=0.080  Sum_probs=129.6

Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHHHHHHHHHHHHHHHccchhHHHHHHHHHHHhhhccc
Q 018388           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (357)
Q Consensus        43 ~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~  122 (357)
                      ..+.+.+....+...+...++..++..+.+++.||+|||+.+..+.++..++.+...+.++   .+.+++..++.|+ +.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~-~~  326 (417)
T d1pv7a_         251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---ALEVVILKTLHMF-EV  326 (417)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHH-HH
T ss_pred             ccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccc---cchhhHHHHHHHH-HH
Confidence            3455667777888999999999999999999999999999999999999999999999999   8888888999998 66


Q ss_pred             chHHHHHHHHHhhCCCccchhHHHHHH-HHHHHHHHHhhHhhhHHh----hhHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018388          123 GSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (357)
Q Consensus       123 ~~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~  197 (357)
                      +...+...+++.|.+|+|+|++..+.. +....+|..++|.++|++    |++..|++.+++.++..++..+.++++.+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         327 PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred             HHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            777889999999999999999999975 566788999999888875    789999998888777777777777655443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=2.1e-11  Score=107.36  Aligned_cols=176  Identities=10%  Similarity=-0.070  Sum_probs=120.8

Q ss_pred             hhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCcchhhhHH
Q 018388            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (357)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~Grk~~l~~~   87 (357)
                      +.++.+....++............|.+..+       ..+.+....++..+...++..++.++.|+++||++||+.....
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  321 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKE-------VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  321 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-------BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhccc-------ccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccccc
Confidence            344455555555555555556666776543       4455667779999999999999999999999999987754443


Q ss_pred             HHHHHHHHH---HHHHccchhHHHHHHHHHHHhhhcccchHHHHHHHHHhhCCCccchhHHHHHHHHHHHH-HHHhhHhh
Q 018388           88 LTLSIIPLA---ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSA-SFVCGTLA  163 (357)
Q Consensus        88 ~~~~~~~~~---~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~  163 (357)
                      .....+...   ....... ...+...+.-++.|+ +.+...+....+..|..|+++|+++.|+.+....+ |.+++|.+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~  399 (447)
T d1pw4a_         322 VFFMTLVTIATIVYWMNPA-GNPTVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI  399 (447)
T ss_dssp             HHHHHHHHHHHHHTTSCCT-TCHHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333222222   2222211 115666677777787 55566678889999999999999999998877766 56778888


Q ss_pred             hHHh----hhHHHHHHHHHHHHHHHHHHHHhcc
Q 018388          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLK  192 (357)
Q Consensus       164 ~~~l----~~~~~f~~~~~~~~~~~~~~~~~~~  192 (357)
                      .+++    ||+..|++.+...++..++..+..+
T Consensus       400 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         400 VGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI  432 (447)
T ss_dssp             HHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8775    7888888877766665555444433