Citrus Sinensis ID: 018391

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
MSLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP
cccHHHHHHHHccccccEEEEEEEEEccccccccccEEEEcccccccccccccccccccccccccccccEEEEccEEEEccccccccEEEEEEEEccccccccccHHHHHHHHHccccccccccEEEccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEcccccccccEEEcccccccccEEEEEccccccccHHHHHHHHHHHHccccc
ccHHHHHHcccccccccEEEEEEEEEEcccccccccccccccccccHHHcccEccccccccccccccccEEEEEEEEccccccccccEEEEEEccccccccccccHHHHHHHHHHcHHHHcccccccEEEEEEEccccccccccccccccccccccEEEccccccEcHHHHHHHHHHHHHHccEEEcccccEEccccEEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEcccccEEEEcccHHHcccccccccccccccccHHHHHHHHHHEEcccc
MSLLNDLLNLNLSESTEKVIAEYVWIggsgmdlrskartlpapttdptklpkwnydgsstnqapgddsevilypqtvfkdpfrrgnnilvmcdaytpagepiptnkrfnaakvfghpdvvaeepwygiEQEYTLLQkdinwplgwpvggypgpqgpyycgvgadkalgrdiVNSHYKACLYAGinisgingevmpgqwefqvgpcvgissgDQLWMARYILERITEIAGVvlsfdpkpikgdwngagahanystksmrndggIDVIKKAIEKLGKRHGEHIaaygegnerrltgrhetadintfswgvanrgasirvgrdtekegkgyfedrrpasnmdpyVVTSMIAETTILWKP
MSLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKArtlpapttdptklpkwnydGSSTnqapgddsevILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAhanystksmrndggIDVIKKAIEKLGKRHGEHIaaygegnerrltGRHETAdintfswgvanrgasirvgrdtekegkgyfedrrpasnmdpyvVTSMIAETTILWKP
MSllndllnlnlSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLgwpvggypgpqgpyycgvgADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP
******LLNLNLSESTEKVIAEYVWIGGSG***************************************VILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYST****NDGGIDVIKKAIEKLGKRHGEHIAAYGEG***RLTGRHETADINTFSWGVANRGASIRV**********************PYVVTSMIAETTILW**
**LLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP
MSLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP
MSLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSST****GDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK*
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MSLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query356 2.2.26 [Sep-21-2011]
P32289356 Glutamine synthetase nodu N/A no 1.0 1.0 0.893 0.0
P04078356 Glutamine synthetase cyto N/A no 1.0 1.0 0.882 0.0
P04771356 Glutamine synthetase PR-2 N/A no 1.0 1.0 0.870 0.0
P51118356 Glutamine synthetase cyto no no 1.0 1.0 0.873 0.0
P51119356 Glutamine synthetase cyto yes no 1.0 1.0 0.873 0.0
P04770356 Glutamine synthetase PR-1 N/A no 1.0 1.0 0.870 0.0
Q42899356 Glutamine synthetase cyto N/A no 1.0 1.0 0.862 0.0
Q43785356 Glutamine synthetase nodu N/A no 1.0 1.0 0.862 0.0
O82560356 Glutamine synthetase cyto no no 1.0 1.0 0.867 0.0
P00965356 Glutamine synthetase N-1 N/A no 1.0 1.0 0.862 0.0
>sp|P32289|GLNA_VIGAC Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1 Back     alignment and function desciption
 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/356 (89%), Positives = 341/356 (95%)

Query: 1   MSLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSST 60
           MSLL+DL+NLNLS++TEK+IAEY+WIGGSG+DLRSKARTLP P +DP+KLPKWNYDGSST
Sbjct: 1   MSLLSDLINLNLSDTTEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSST 60

Query: 61  NQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVV 120
            QAPG+DSEVI+YPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR NAAK+F HPDVV
Sbjct: 61  GQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVV 120

Query: 121 AEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACL 180
           AEEPWYGIEQEYTLLQKD+NWPLGWPVGG+PGPQGPYYCG GADKA GRDIV++HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIK 240
           YAGINISGINGEVMPGQWEFQVGP VGIS+GD+LW+ARYILERITEIAGVVLSFDPKPIK
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIK 240

Query: 241 GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETAD 300
           GDWNGAGAH NYSTK+MRNDGG +VIK AIEKLGKRH EHIAAYGEGNERRLTGRHETAD
Sbjct: 241 GDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETAD 300

Query: 301 INTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           INTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct: 301 INTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356

Vigna aconitifolia (taxid: 3918)
EC: 6EC: .EC: 3EC: .EC: 1EC: .EC: 2
>sp|P04078|GLNA1_MEDSA Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|P04771|GLNA2_PHAVU Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1 Back     alignment and function description
>sp|P51118|GLNA1_VITVI Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1 Back     alignment and function description
>sp|P51119|GLNA2_VITVI Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1 Back     alignment and function description
>sp|P04770|GLNA1_PHAVU Glutamine synthetase PR-1 OS=Phaseolus vulgaris PE=2 SV=1 Back     alignment and function description
>sp|Q42899|GLNA1_LOTJA Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2 Back     alignment and function description
>sp|Q43785|GLNA3_MEDSA Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1 Back     alignment and function description
>sp|O82560|GLNA2_SOYBN Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1 Back     alignment and function description
>sp|P00965|GLNA3_PHAVU Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
417060356 RecName: Full=Glutamine synthetase nodul 1.0 1.0 0.893 0.0
449436357356 PREDICTED: glutamine synthetase nodule i 1.0 1.0 0.896 0.0
42733460356 glutamine synthetase [Camellia sinensis] 1.0 1.0 0.887 0.0
224096598356 predicted protein [Populus trichocarpa] 1.0 1.0 0.879 0.0
224081369356 predicted protein [Populus trichocarpa] 1.0 1.0 0.882 0.0
121368356 RecName: Full=Glutamine synthetase cytos 1.0 1.0 0.882 0.0
225451379356 PREDICTED: glutamine synthetase cytosoli 1.0 1.0 0.882 0.0
159138927356 glutamine synthetase [Gossypium raimondi 1.0 1.0 0.884 0.0
358248136356 cytosolic glutamine synthetase alpha [Gl 1.0 1.0 0.867 0.0
356520651356 PREDICTED: glutamine synthetase PR-2-lik 1.0 1.0 0.870 0.0
>gi|417060|sp|P32289.1|GLNA_VIGAC RecName: Full=Glutamine synthetase nodule isozyme; Short=GS; AltName: Full=Glutamate--ammonia ligase gi|170637|gb|AAA34239.1| glutamine synthetase [Vigna aconitifolia] gi|1094850|prf||2106409A Gln synthetase Back     alignment and taxonomy information
 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/356 (89%), Positives = 341/356 (95%)

Query: 1   MSLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSST 60
           MSLL+DL+NLNLS++TEK+IAEY+WIGGSG+DLRSKARTLP P +DP+KLPKWNYDGSST
Sbjct: 1   MSLLSDLINLNLSDTTEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSST 60

Query: 61  NQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVV 120
            QAPG+DSEVI+YPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR NAAK+F HPDVV
Sbjct: 61  GQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVV 120

Query: 121 AEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACL 180
           AEEPWYGIEQEYTLLQKD+NWPLGWPVGG+PGPQGPYYCG GADKA GRDIV++HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIK 240
           YAGINISGINGEVMPGQWEFQVGP VGIS+GD+LW+ARYILERITEIAGVVLSFDPKPIK
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVLSFDPKPIK 240

Query: 241 GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETAD 300
           GDWNGAGAH NYSTK+MRNDGG +VIK AIEKLGKRH EHIAAYGEGNERRLTGRHETAD
Sbjct: 241 GDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETAD 300

Query: 301 INTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           INTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct: 301 INTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356

Source: Vigna aconitifolia

Species: Vigna aconitifolia

Genus: Vigna

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449436357|ref|XP_004135959.1| PREDICTED: glutamine synthetase nodule isozyme-like [Cucumis sativus] gi|449488792|ref|XP_004158173.1| PREDICTED: glutamine synthetase nodule isozyme-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42733460|dbj|BAD11327.1| glutamine synthetase [Camellia sinensis] Back     alignment and taxonomy information
>gi|224096598|ref|XP_002310666.1| predicted protein [Populus trichocarpa] gi|118483322|gb|ABK93563.1| unknown [Populus trichocarpa] gi|222853569|gb|EEE91116.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224081369|ref|XP_002306385.1| predicted protein [Populus trichocarpa] gi|222855834|gb|EEE93381.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|121368|sp|P04078.1|GLNA1_MEDSA RecName: Full=Glutamine synthetase cytosolic isozyme; AltName: Full=Glutamate--ammonia ligase gi|19605|emb|CAA27570.1| glutamine synthetase [Medicago sativa] gi|225302|prf||1211328A synthetase,Gln Back     alignment and taxonomy information
>gi|225451379|ref|XP_002263856.1| PREDICTED: glutamine synthetase cytosolic isozyme 2 [Vitis vinifera] gi|296087096|emb|CBI33470.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|159138927|gb|ABW89463.1| glutamine synthetase [Gossypium raimondii] Back     alignment and taxonomy information
>gi|358248136|ref|NP_001239821.1| cytosolic glutamine synthetase alpha [Glycine max] gi|255635501|gb|ACU18102.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356520651|ref|XP_003528974.1| PREDICTED: glutamine synthetase PR-2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
TAIR|locus:2151739356 GSR 1 "glutamine synthase clon 0.966 0.966 0.805 2.4e-156
TAIR|locus:2088580354 GLN1.3 "glutamine synthetase 1 0.957 0.963 0.797 1.9e-154
TAIR|locus:2174175356 GLN1;4 "glutamine synthetase 1 1.0 1.0 0.780 4e-154
TAIR|locus:2198080353 GLN1;5 "glutamine synthetase 1 0.949 0.957 0.757 2.8e-146
TAIR|locus:2165897430 GS2 "glutamine synthetase 2" [ 0.957 0.793 0.706 9.5e-137
SGD|S000006239370 GLN1 "Glutamine synthetase (GS 0.912 0.878 0.569 1.5e-99
FB|FBgn0001145369 Gs2 "Glutamine synthetase 2" [ 0.938 0.905 0.570 4.5e-98
CGD|CAL0001010373 GLN1 [Candida albicans (taxid: 0.921 0.879 0.550 1.8e-96
ASPGD|ASPL0000016342357 glnA [Emericella nidulans (tax 0.918 0.915 0.552 5.9e-96
UNIPROTKB|G4NG12358 MGG_14279 "Glutamine synthetas 0.915 0.910 0.568 1.6e-95
TAIR|locus:2151739 GSR 1 "glutamine synthase clone R1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1524 (541.5 bits), Expect = 2.4e-156, P = 2.4e-156
 Identities = 277/344 (80%), Positives = 303/344 (88%)

Query:    13 SESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVIL 72
             S+ST+K+IAEY+W+GGSGMD+RSKARTLP P TDP++LPKWNYDGSST QAPG+DSEVIL
Sbjct:    13 SDSTDKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIL 72

Query:    73 YPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEY 132
             YPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR  AAKVF +PDV AE PWYGIEQEY
Sbjct:    73 YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKVFSNPDVAAEVPWYGIEQEY 132

Query:   133 TLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGE 192
             TLLQKD+ WP+                   ADK+ GRD+V+SHYKACLYAGINISGINGE
Sbjct:   133 TLLQKDVKWPVGWPIGGYPGPQGPYYCGIGADKSFGRDVVDSHYKACLYAGINISGINGE 192

Query:   193 VMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANY 252
             VMPGQWEFQVGP VGIS+ D++W+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NY
Sbjct:   193 VMPGQWEFQVGPAVGISAADEIWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHCNY 252

Query:   253 STKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRG 312
             STKSMR +GG ++IKKAI+KLG RH EHIAAYGEGNERRLTG HETADINTF WGVANRG
Sbjct:   253 STKSMREEGGYEIIKKAIDKLGLRHKEHIAAYGEGNERRLTGHHETADINTFLWGVANRG 312

Query:   313 ASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
             ASIRVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILW P
Sbjct:   313 ASIRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWNP 356
GO:0003824 "catalytic activity" evidence=IEA
GO:0004356 "glutamate-ammonia ligase activity" evidence=IEA;ISS;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005829 "cytosol" evidence=TAS
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0042128 "nitrate assimilation" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0010150 "leaf senescence" evidence=IEP
GO:0005507 "copper ion binding" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
TAIR|locus:2088580 GLN1.3 "glutamine synthetase 1.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174175 GLN1;4 "glutamine synthetase 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198080 GLN1;5 "glutamine synthetase 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165897 GS2 "glutamine synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000006239 GLN1 "Glutamine synthetase (GS)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
FB|FBgn0001145 Gs2 "Glutamine synthetase 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
CGD|CAL0001010 GLN1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ASPGD|ASPL0000016342 glnA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4NG12 MGG_14279 "Glutamine synthetase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q43127GLNA2_ARATH6, ., 3, ., 1, ., 20.74220.99150.8209nono
Q43785GLNA3_MEDSA6, ., 3, ., 1, ., 20.86231.01.0N/Ano
Q8GXW5GLN15_ARATH6, ., 3, ., 1, ., 20.80470.94940.9575nono
P32288GLNA_YEAST6, ., 3, ., 1, ., 20.61420.91850.8837yesno
P14654GLN12_ORYSJ6, ., 3, ., 1, ., 20.82250.99710.9943nono
Q42624GLNAC_BRANA6, ., 3, ., 1, ., 20.75920.99150.8247N/Ano
P14656GLN11_ORYSJ6, ., 3, ., 1, ., 20.85671.01.0yesno
P04771GLNA2_PHAVU6, ., 3, ., 1, ., 20.87071.01.0N/Ano
P08282GLNA1_PEA6, ., 3, ., 1, ., 20.86400.99150.9943N/Ano
P14655GLNA2_ORYSJ6, ., 3, ., 1, ., 20.75281.00.8317nono
P15102GLNA4_PHAVU6, ., 3, ., 1, ., 20.76401.00.8298N/Ano
Q9FMD9GLN14_ARATH6, ., 3, ., 1, ., 20.84831.01.0nono
Q9LVI8GLN13_ARATH6, ., 3, ., 1, ., 20.85260.99150.9971nono
Q43066GLNA4_PEA6, ., 3, ., 1, ., 20.85350.99710.9943N/Ano
O00088GLNA_AGABI6, ., 3, ., 1, ., 20.62780.97470.9802N/Ano
P25462GLNAC_MAIZE6, ., 3, ., 1, ., 20.74220.99150.8345N/Ano
P04078GLNA1_MEDSA6, ., 3, ., 1, ., 20.88201.01.0N/Ano
Q06378GLNA3_HORVU6, ., 3, ., 1, ., 20.83720.96620.9662N/Ano
Q8LCE1GLN12_ARATH6, ., 3, ., 1, ., 20.83981.01.0nono
Q6FMT6GLNA_CANGA6, ., 3, ., 1, ., 20.63580.92410.8844yesno
P14636GLNA3_LUPAN6, ., 3, ., 1, ., 20.83170.88481.0N/Ano
P23712GLNA_LACSA6, ., 3, ., 1, ., 20.83890.99430.9888N/Ano
O82560GLNA2_SOYBN6, ., 3, ., 1, ., 20.86791.01.0nono
P38562GLNA4_MAIZE6, ., 3, ., 1, ., 20.84550.99711.0N/Ano
P38563GLNA5_MAIZE6, ., 3, ., 1, ., 20.83380.99710.9943N/Ano
O22504GLNA1_DAUCA6, ., 3, ., 1, ., 20.80730.98871.0N/Ano
P38561GLNA3_MAIZE6, ., 3, ., 1, ., 20.84551.01.0N/Ano
P00965GLNA3_PHAVU6, ., 3, ., 1, ., 20.86231.01.0N/Ano
Q96UV5GLNA_HEBCY6, ., 3, ., 1, ., 20.61710.96910.9745N/Ano
P38560GLNA2_MAIZE6, ., 3, ., 1, ., 20.80050.99710.9646N/Ano
Q56WN1GLN11_ARATH6, ., 3, ., 1, ., 20.85111.01.0yesno
Q4W8D0GLN13_ORYSJ6, ., 3, ., 1, ., 20.81400.99710.9594nono
P51118GLNA1_VITVI6, ., 3, ., 1, ., 20.87351.01.0nono
P51119GLNA2_VITVI6, ., 3, ., 1, ., 20.87351.01.0yesno
O22506GLNA2_DAUCA6, ., 3, ., 1, ., 20.74431.00.8240N/Ano
P13564GLNA2_HORVU6, ., 3, ., 1, ., 20.74220.99150.8133N/Ano
P52782GLNA_LUPLU6, ., 3, ., 1, ., 20.86680.99151.0N/Ano
P52783GLNA_PINSY6, ., 3, ., 1, ., 20.80280.99710.9943N/Ano
P24099GLNA1_SOYBN6, ., 3, ., 1, ., 20.86230.99711.0nono
P20478GLNA2_DROME6, ., 3, ., 1, ., 20.60670.97470.9403yesno
Q9XQ94GLNA2_MEDSA6, ., 3, ., 1, ., 20.75281.00.8317N/Ano
Q42899GLNA1_LOTJA6, ., 3, ., 1, ., 20.86231.01.0N/Ano
P38559GLNA1_MAIZE6, ., 3, ., 1, ., 20.83330.99430.9915N/Ano
P12424GLNA_NICPL6, ., 3, ., 1, ., 20.85630.99710.9971N/Ano
P32289GLNA_VIGAC6, ., 3, ., 1, ., 20.89321.01.0N/Ano
Q42688GLNA1_CHLRE6, ., 3, ., 1, ., 20.61290.95780.8926N/Ano
P07694GLNA3_PEA6, ., 3, ., 1, ., 20.85910.99710.9943N/Ano
O04867GLNA1_ALNGL6, ., 3, ., 1, ., 20.85671.01.0N/Ano
P04770GLNA1_PHAVU6, ., 3, ., 1, ., 20.87071.01.0N/Ano
P08281GLNA2_PEA6, ., 3, ., 1, ., 20.74431.00.8279N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.10.998
3rd Layer6.3.1.20.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_VII0739
RecName- Full=Glutamine synthetase; EC=6.3.1.2; (356 aa)
(Populus trichocarpa)
Predicted Functional Partners:
PAL5
SubName- Full=Phenylalanine ammonia-lyase; (712 aa)
     •• 0.946
PAL
RecName- Full=Phenylalanine ammonia-lyase; EC=4.3.1.24;; This is a key enzyme of plant metaboli [...] (715 aa)
     •• 0.946
gdcT1
precursor of carboxylase t-protein 1, glycine decarboxylase complex (EC-2.1.2.10); The glycine [...] (409 aa)
     •• 0.926
gdcT2
RecName- Full=Aminomethyltransferase; EC=2.1.2.10;; The glycine cleavage system catalyzes the d [...] (409 aa)
     •• 0.926
eugene3.00150904
glutamate dehydrogenase (NAD(P)+) (EC-1.4.1.3) (412 aa)
     •• 0.926
eugene3.00130573
glutamate dehydrogenase (NAD(P)+) (EC-1.4.1.3) (411 aa)
     •• 0.926
estExt_fgenesh4_pg.C_LG_XIX0409
glutamate dehydrogenase (NAD(P)+) (EC-1.4.1.3) (411 aa)
     •• 0.926
estExt_fgenesh4_pg.C_2320019
glutamate dehydrogenase (NAD(P)+) (EC-1.4.1.3) (412 aa)
     •• 0.926
estExt_fgenesh4_pm.C_1300024
SubName- Full=Putative uncharacterized protein; (588 aa)
     •• 0.913
estExt_fgenesh4_pg.C_LG_VI0304
hypothetical protein (1629 aa)
     •• 0.907

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
PLN02284354 PLN02284, PLN02284, glutamine synthetase 0.0
PLN03036432 PLN03036, PLN03036, glutamine synthetase; Provisio 0.0
pfam00120259 pfam00120, Gln-synt_C, Glutamine synthetase, catal 7e-84
COG0174443 COG0174, GlnA, Glutamine synthetase [Amino acid tr 6e-68
pfam0395184 pfam03951, Gln-synt_N, Glutamine synthetase, beta- 2e-15
TIGR00653459 TIGR00653, GlnA, glutamine synthetase, type I 2e-13
TIGR03105435 TIGR03105, gln_synth_III, glutamine synthetase, ty 3e-05
>gnl|CDD|177922 PLN02284, PLN02284, glutamine synthetase Back     alignment and domain information 
 Score =  780 bits (2016), Expect = 0.0
 Identities = 318/354 (89%), Positives = 336/354 (94%)

Query: 1   MSLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSST 60
           MSLL+DL+NLNLS+ST+K+IAEY+WIGGSGMDLRSKARTLP P TDP+KLPKWNYDGSST
Sbjct: 1   MSLLSDLINLNLSDSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSST 60

Query: 61  NQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVV 120
            QAPG+DSEVILYPQ +FKDPFR GNNILVMCDAYTPAGEPIPTNKR  AAK+F HPDV 
Sbjct: 61  GQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVA 120

Query: 121 AEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACL 180
           AEEPWYGIEQEYTLLQKD+ WPLGWPVGGYPGPQGPYYCGVGADKA GRDIV++HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCGVGADKAFGRDIVDAHYKACL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIK 240
           YAGINISGINGEVMPGQWEFQVGP VGIS+GDQLW+ARYILERITEIAGVV+SFDPKPI 
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP 240

Query: 241 GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETAD 300
           GDWNGAGAH NYSTKSMR DGG +VIKKAIEKLG RH EHIAAYGEGNERRLTG+HETAD
Sbjct: 241 GDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETAD 300

Query: 301 INTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354
           INTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct: 301 INTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354

Length = 354
>gnl|CDD|178603 PLN03036, PLN03036, glutamine synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215731 pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain Back     alignment and domain information
>gnl|CDD|223252 COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|217811 pfam03951, Gln-synt_N, Glutamine synthetase, beta-Grasp domain Back     alignment and domain information
>gnl|CDD|233073 TIGR00653, GlnA, glutamine synthetase, type I Back     alignment and domain information
>gnl|CDD|234109 TIGR03105, gln_synth_III, glutamine synthetase, type III Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 356
PLN02284354 glutamine synthetase 100.0
PLN03036432 glutamine synthetase; Provisional 100.0
COG0174443 GlnA Glutamine synthetase [Amino acid transport an 100.0
TIGR00653460 GlnA glutamine synthetase, type I. Alternate name: 100.0
PRK09469469 glnA glutamine synthetase; Provisional 100.0
TIGR03105435 gln_synth_III glutamine synthetase, type III. This 100.0
PF00120259 Gln-synt_C: Glutamine synthetase, catalytic domain 100.0
KOG0683380 consensus Glutamine synthetase [Amino acid transpo 100.0
COG3968 724 Uncharacterized protein related to glutamine synth 99.74
PF0395184 Gln-synt_N: Glutamine synthetase, beta-Grasp domai 99.47
TIGR02050287 gshA_cyan_rel uncharacterized enzyme. This family 98.71
PRK13516 373 gamma-glutamyl:cysteine ligase; Provisional 98.59
PRK13515 371 carboxylate-amine ligase; Provisional 98.51
PRK13517 373 carboxylate-amine ligase; Provisional 98.5
PRK13518 357 carboxylate-amine ligase; Provisional 98.18
PLN02611 482 glutamate--cysteine ligase 98.08
PF04107288 GCS2: Glutamate-cysteine ligase family 2(GCS2); In 97.5
TIGR01436 446 glu_cys_lig_pln glutamate--cysteine ligase, plant 97.42
TIGR02048 376 gshA_cyano glutamate--cysteine ligase, cyanobacter 97.36
COG2170 369 Uncharacterized conserved protein [Function unknow 97.21
KOG0683380 consensus Glutamine synthetase [Amino acid transpo 95.14
TIGR03444 390 gshA_related glutamate--cysteine ligase family pro 93.7
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 87.04
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 83.11
PF06877104 RraB: Regulator of ribonuclease activity B; InterP 82.06
COG3572 456 GshA Gamma-glutamylcysteine synthetase [Coenzyme m 81.31
>PLN02284 glutamine synthetase Back     alignment and domain information 
Probab=100.00  E-value=3.6e-95  Score=710.61  Aligned_cols=354  Identities=90%  Similarity=1.506  Sum_probs=316.6

Q ss_pred             ChhhHHhhcCCCCCCCcEEEEEEEEEeCCCCcceeeEEeCCCCCCCCCCCCcccccCCCCCCCCCCCccEEEEeeeceec
Q 018391            1 MSLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKD   80 (356)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~v~~~~~dg~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~~g~~~~~~~D~~l~PDt~~~~   80 (356)
                      ||..+...+++++++.+.++++|+|+|+.++|+|||.+++.++.+.+++.++|+||||++++..++++|++++|||++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~y~wi~~~~~dl~g~~~~~~~~~~~~~~~~~~~fdGssi~~~~~~~sD~~l~PDt~~~~   80 (354)
T PLN02284          1 MSLLSDLINLNLSDSTDKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKD   80 (354)
T ss_pred             CchhhhhHhhcccCcCCeEEEEEEEEEEEecCCCCceEEecccccccccCCceeecCCCCCCccCCCceEEEEccEEEEC
Confidence            45566677777789999999999999999999999999999999999888999999999988888999999999999999


Q ss_pred             CCCCCCeEEEEEEeecCCCccCCCChHHHHHHHHcCcccCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCccc
Q 018391           81 PFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCG  160 (356)
Q Consensus        81 Pw~~~~~a~V~cd~~~~~G~P~~~~PR~~Lkr~~~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (356)
                      ||.++++++|+||++++||+|++.|||++|||+++++++.|+++++|+|+|||||+.+..+..+++.++.+.++++||+.
T Consensus        81 Pw~~~~~~~vlcdv~~~dG~p~~~dPR~vL~r~~~~~~~~g~~~~~G~E~EF~lf~~~~~~~~g~~~~~~~~~~~~y~~~  160 (354)
T PLN02284         81 PFRGGNNILVMCDAYTPAGEPIPTNKRAKAAKIFSHPDVAAEEPWYGIEQEYTLLQKDVKWPLGWPVGGYPGPQGPYYCG  160 (354)
T ss_pred             CCCCCCeEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHhcCCceeEEeceEEEEEecCCcccCCCCCCCcccCCCCcccC
Confidence            99875689999999999999999999999999999999999999999999999998643223343322355667778776


Q ss_pred             cccchhhHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEecccccC
Q 018391          161 VGADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIK  240 (356)
Q Consensus       161 ~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpKP~~  240 (356)
                      .+.+..+.++++++++++|+++||+|+++|||+|||||||++.|.++|+|||++++||++||+||++||++|||||||+.
T Consensus       161 ~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~h~E~apGQ~Ei~l~~~d~l~aAD~~~~~K~vvk~vA~~~Gl~ATFMPKP~~  240 (354)
T PLN02284        161 VGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPVVGISAGDQLWVARYILERITEIAGVVVSFDPKPIP  240 (354)
T ss_pred             cchhhHHHHHHHHHHHHHHHHCCCCeEEEEcCcCCCceEEEecCCcHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCCCC
Confidence            66545556899999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCceeeeeecccccCCCCchhHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCCCceeeccCCCcceEeeccC
Q 018391          241 GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRD  320 (356)
Q Consensus       241 ~~~~GsG~H~H~Sl~~~~~~~g~~~~~~fiaGl~L~h~~al~a~~~nsYkRl~p~~~ap~~~~~~WG~~NR~a~vRvp~~  320 (356)
                      ++++|||||+|+|||+.+.++|.++++++++|+.|+|+++|+||++||||||+|++|||.+++++||.+||+++||||..
T Consensus       241 ~~~~GSGmH~H~SL~~~~~~gg~~~~~~~l~~~~l~h~~~l~a~~~NSYkRL~p~~eap~~~~~~wg~~NRsa~iRIP~~  320 (354)
T PLN02284        241 GDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFSWGVANRGASIRVGRD  320 (354)
T ss_pred             CCCccCcceeecChhhcccCCcHHHHHHHHHHHHHHHHHHhhhhhcCcHhhcCCCccCcccccceeecCCCceeEEECCC
Confidence            55799999999999975333567888999999989999999999999999999999999667999999999999999976


Q ss_pred             CCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcC
Q 018391          321 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW  354 (356)
Q Consensus       321 ~~~~~~~riE~R~~da~aNPYLalAailaAgl~g  354 (356)
                      ....+++|||+|+||++|||||++|++|++.+++
T Consensus       321 ~~~~~~~riE~R~pd~~aNPYLa~aaila~~~~~  354 (354)
T PLN02284        321 TEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW  354 (354)
T ss_pred             CCCCCCCEEEEcCCCCCCCHHHHHHHHHHHHhcC
Confidence            5333457999999999999999999999998864

>PLN03036 glutamine synthetase; Provisional Back     alignment and domain information
>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00653 GlnA glutamine synthetase, type I Back     alignment and domain information
>PRK09469 glnA glutamine synthetase; Provisional Back     alignment and domain information
>TIGR03105 gln_synth_III glutamine synthetase, type III Back     alignment and domain information
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6 Back     alignment and domain information
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>COG3968 Uncharacterized protein related to glutamine synthetase [General function prediction only] Back     alignment and domain information
>PF03951 Gln-synt_N: Glutamine synthetase, beta-Grasp domain; InterPro: IPR008147 Glutamine synthetase (6 Back     alignment and domain information
>TIGR02050 gshA_cyan_rel uncharacterized enzyme Back     alignment and domain information
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional Back     alignment and domain information
>PRK13515 carboxylate-amine ligase; Provisional Back     alignment and domain information
>PRK13517 carboxylate-amine ligase; Provisional Back     alignment and domain information
>PRK13518 carboxylate-amine ligase; Provisional Back     alignment and domain information
>PLN02611 glutamate--cysteine ligase Back     alignment and domain information
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6 Back     alignment and domain information
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type Back     alignment and domain information
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative Back     alignment and domain information
>COG2170 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0683 consensus Glutamine synthetase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03444 gshA_related glutamate--cysteine ligase family protein Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length Back     alignment and domain information
>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
2d3a_A356 Crystal Structure Of The Maize Glutamine Synthetase 1e-168
3fky_A370 Crystal Structure Of The Glutamine Synthetase Gln1d 1e-106
2uu7_A381 Crystal Structure Of Apo Glutamine Synthetase From 3e-97
2ojw_A384 Crystal Structure Of Human Glutamine Synthetase In 3e-97
>pdb|2D3A|A Chain A, Crystal Structure Of The Maize Glutamine Synthetase Complexed With Adp And Methionine Sulfoximine Phosphate Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  586 bits (1510), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/344 (81%), Positives = 305/344 (88%)
Query: 13  SESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVIL 72
           S++TEK+IAEY+WIGGSGMDLRSKARTLP P TDP+KLPKWNYDGSST QAPG+DSEVIL
Sbjct: 13  SDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVIL 72
Query: 73  YPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEY 132
           YPQ +FKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAK+F  P+V AEEPWYGIEQEY
Sbjct: 73  YPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEY 132
Query: 133 TLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGE 192
           TLLQKD NWPL                   A+K+ GRDIV++HYKACLYAGINISGINGE
Sbjct: 133 TLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGE 192
Query: 193 VMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANY 252
           VMPGQWEFQVGP VGISSGDQ+W+ARYILERITEIAGVV++FDPKPI GDWNGAGAH NY
Sbjct: 193 VMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNY 252
Query: 253 STKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRG 312
           ST+SMR +GG +VIK AIEKL  RH EHIAAYGEGNERRLTGRHETADINTFSWGVANRG
Sbjct: 253 STESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRG 312
Query: 313 ASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           AS+RVGR+TE+ GKGYFEDRRPASNMDPYVVTSMIAETTI+WKP
Sbjct: 313 ASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356
>pdb|3FKY|A Chain A, Crystal Structure Of The Glutamine Synthetase Gln1deltan18 From The Yeast Saccharomyces Cerevisiae Length = 370 Back     alignment and structure
>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog ( Canis Familiaris) Length = 381 Back     alignment and structure
>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex With Adp And Phosphate Length = 384 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
2d3a_A356 Glutamine synthetase; ligase; HET: P3S ADP; 2.63A 0.0
2ojw_A384 Glutamine synthetase; amino-acid biosynthesis, lig 0.0
3fky_A370 Glutamine synthetase; beta-grAsp, catalytic domain 0.0
3o6x_A 729 Glutamine synthetase; type III, beta barrel,dodeca 2e-10
2j9i_A421 Glutamate-ammonia ligase domain-containing protein 2e-08
3qaj_A444 Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G 4e-08
3ng0_A473 Glutamine synthetase; GSI, nitrogen metabolism, sy 3e-05
2bvc_A486 Glutamine synthetase 1; ligase, transition state m 5e-05
1f52_A468 Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 5e-05
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Length = 356 Back     alignment and structure
 Score =  572 bits (1477), Expect = 0.0
 Identities = 303/356 (85%), Positives = 334/356 (93%)

Query: 1   MSLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSST 60
           M+ L DL+NLNLS++TEK+IAEY+WIGGSGMDLRSKARTLP P TDP+KLPKWNYDGSST
Sbjct: 1   MACLTDLVNLNLSDTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSST 60

Query: 61  NQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVV 120
            QAPG+DSEVILYPQ +FKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAK+F  P+V 
Sbjct: 61  GQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVA 120

Query: 121 AEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACL 180
           AEEPWYGIEQEYTLLQKD NWPLGWP+GG+PGPQGPYYCG+GA+K+ GRDIV++HYKACL
Sbjct: 121 AEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACL 180

Query: 181 YAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIK 240
           YAGINISGINGEVMPGQWEFQVGP VGISSGDQ+W+ARYILERITEIAGVV++FDPKPI 
Sbjct: 181 YAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIP 240

Query: 241 GDWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETAD 300
           GDWNGAGAH NYST+SMR +GG +VIK AIEKL  RH EHIAAYGEGNERRLTGRHETAD
Sbjct: 241 GDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETAD 300

Query: 301 INTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
           INTFSWGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPYVVTSMIAETTI+WKP
Sbjct: 301 INTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 356
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Length = 384 Back     alignment and structure
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Length = 370 Back     alignment and structure
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis} Length = 729 Back     alignment and structure
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Length = 421 Back     alignment and structure
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP} Length = 473 Back     alignment and structure
>2bvc_A Glutamine synthetase 1; ligase, transition state mimic; HET: P3S ADP; 2.1A {Mycobacterium tuberculosis} SCOP: d.15.9.1 d.128.1.1 PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 1hto_A* 1htq_A* Length = 486 Back     alignment and structure
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Length = 468 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
3fky_A370 Glutamine synthetase; beta-grAsp, catalytic domain 100.0
2d3a_A356 Glutamine synthetase; ligase; HET: P3S ADP; 2.63A 100.0
2ojw_A384 Glutamine synthetase; amino-acid biosynthesis, lig 100.0
3qaj_A444 Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G 100.0
3ng0_A473 Glutamine synthetase; GSI, nitrogen metabolism, sy 100.0
4hpp_A443 Probable glutamine synthetase; glutamine synthase 100.0
4acf_A486 Glutamine synthetase 1; ligase, nucleotide-binding 100.0
1f52_A468 Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 100.0
2j9i_A421 Glutamate-ammonia ligase domain-containing protein 100.0
3o6x_A 729 Glutamine synthetase; type III, beta barrel,dodeca 100.0
1r8g_A 372 Hypothetical protein YBDK; structural genomics, un 98.16
2gwd_A 449 Glutamate cysteine ligase; disulfide bridges, glut 98.0
3ln6_A 750 Glutathione biosynthesis bifunctional protein GSH; 88.66
2fao_A309 Probable ATP-dependent DNA ligase; polymerase, pri 84.33
3ln7_A 757 Glutathione biosynthesis bifunctional protein GSH; 83.61
1nxi_A132 Conserved hypothetical protein VC0424; structural 80.15
>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=1.4e-97  Score=730.55  Aligned_cols=348  Identities=60%  Similarity=1.066  Sum_probs=296.6

Q ss_pred             hhhHHhhcCCCCCCCcEEEEEEEEEeCCCCcceeeEEeCCCCCCCCCCCCcccccCCCCCCCCCCCccEEEEeeeceecC
Q 018391            2 SLLNDLLNLNLSESTEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDP   81 (356)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~v~~~~~dg~G~~~rgK~~~~~~~~~~~~~~~~~~~dgs~~g~~~~~~~D~~l~PDt~~~~P   81 (356)
                      .+|.+|++|   ++.++++|+++|+|+.| .+|||+++++.+.+.++++++|+||||++++.+++++|++|+|||++++|
T Consensus        10 ~~~~~~~~l---~~~~i~~v~~~~~D~~G-~lR~K~~~~~~~~~~~~~~~~~~fDGss~g~~~~~~sD~~l~Pdt~~~~P   85 (370)
T 3fky_A           10 QILQKYLEL---DQRGRIIAEYVWIDGTG-NLRSKGRTLKKRITSIDQLPEWNFDGSSTNQAPGHDSDIYLKPVAYYPDP   85 (370)
T ss_dssp             --------------CCCEEEEEEEECSSS-CEEEEEEEESSCCCSGGGSCCEEECGGGTTSSCCCC--EEEEEEEEEECT
T ss_pred             HHHHHHhCc---ccCCeEEEEEEEEcCCC-CeEEEEEECccccchHHhCCccccCCcccccccCCCCCeeEeeeEEEEcC
Confidence            478999999   78999999999999999 99999999998888888888999999999998889999999999999999


Q ss_pred             CCCCCeEEEEEEeecCCCccCCCChHHHHHHHHcCcccCCCcceEeeeeeEEEeccCCCCCCCCCCCCCCCCCCCCcccc
Q 018391           82 FRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLGWPVGGYPGPQGPYYCGV  161 (356)
Q Consensus        82 w~~~~~a~V~cd~~~~~G~P~~~~PR~~Lkr~~~~l~~~G~~~~~g~E~EF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (356)
                      |+++++++|+||++++||+|++.|||++|||++++++  |+++++|+|+|||||+.+. .+.+++.++.|.++++||+..
T Consensus        86 w~~~~~a~vlcd~~~~dG~P~~~~pR~iLkr~~~~~~--g~~~~~G~E~EF~Lf~~~~-~~~~~p~~~~p~~~g~yy~~~  162 (370)
T 3fky_A           86 FRRGDNIVVLAACYNNDGTPNKFNHRHEAAKLFAAHK--DEEIWFGLEQEYTLFDMYD-DVYGWPKGGYPAPQGPYYCGV  162 (370)
T ss_dssp             TTCTTCEEEEEEEECTTSSBCTTCCHHHHHHHHHHTG--GGCCEEEEEEEEEEECTTS-SBTTCCTTSBCSCSSSCTTCC
T ss_pred             CCCCCeEEEEEEEEcCCCCCCCCCHHHHHHHHHHHhc--CCCceEEeeeEEEEEccCC-CcccCCCCCccCCCCcccccc
Confidence            9997799999999999999999999999999999877  9999999999999998764 244566556788888998876


Q ss_pred             ccchhhHHHHHHHHHHHHHHcCceeeeecCCCCCCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEecccccCC
Q 018391          162 GADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKG  241 (356)
Q Consensus       162 ~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~gpGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpKP~~~  241 (356)
                      +....+.++++++++++|+++||+||++|||+|||||||++.|.++|++||++++||++||+||++||++|||||||+.+
T Consensus       163 ~~~~~~~~~i~~~i~~~l~~~Gi~ve~~h~E~~pGQ~Ei~~~~~~~l~aAD~~~~~K~~vk~vA~~~G~~ATFmpKP~~g  242 (370)
T 3fky_A          163 GAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKG  242 (370)
T ss_dssp             STTTCSCHHHHHHHHHHHHHHTCCEEEEEECSSTTEEEEEEEEEETHHHHHHHHHHHHHHHHHHHTTTCEEECCSCSSSS
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCCeeeeecCcCCCceEEecCCCCHHHHHHHHHHHHHHHHHHHHHhCcEEEEcccccCC
Confidence            65554558999999999999999999999999999999999999999999999999999999999999999999999984


Q ss_pred             CCCCceeeeeecccccCCCCchhHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCCCceeeccCCCcceEeeccCC
Q 018391          242 DWNGAGAHANYSTKSMRNDGGIDVIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDT  321 (356)
Q Consensus       242 ~~~GsG~H~H~Sl~~~~~~~g~~~~~~fiaGl~L~h~~al~a~~~nsYkRl~p~~~ap~~~~~~WG~~NR~a~vRvp~~~  321 (356)
                      |++|||||+|+|||+..+++|++.+++|++||+++|+++|+||+.||||||+|++|||...+++||.+||+++||||...
T Consensus       243 d~~GSG~H~H~Sl~~~~~~~g~~~~~~~i~gl~~~h~~~i~a~~~nSYkRL~~~~eap~~~~~sWG~~NRsa~iRIp~~~  322 (370)
T 3fky_A          243 DWNGAGCHANVSTKEMRQPGGTKYIEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSV  322 (370)
T ss_dssp             SSCCCBEEEEEECHHHHSSSTHHHHHHHHHHHHHTHHHHHHSSCTTGGGC--------CCSCCCEEESCTTSSEEECHHH
T ss_pred             CCCcccceeeeccccccCCCCHHHHHHHHHHHHHHhHHHHHHHccchhhhcCCCccCCCcccceEecCCCceeEEecCCC
Confidence            48999999999999754456777789999999449999999999999999999999995446899999999999999754


Q ss_pred             CCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCCC
Q 018391          322 EKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP  356 (356)
Q Consensus       322 ~~~~~~riE~R~~da~aNPYLalAailaAgl~g~~  356 (356)
                      +..+.+|||+|+||++|||||++||+|+|||+|++
T Consensus       323 ~~~~~~riE~R~pda~aNPYLa~Aailaagl~Gi~  357 (370)
T 3fky_A          323 AKEGYGYFEDRRPASNIDPYLVTGIMCETVCGAID  357 (370)
T ss_dssp             HHHTCCCEEECCCBTTCCHHHHHHHHHHHHHCCBT
T ss_pred             CCCCCCEEEECCCCCCCCHHHHHHHHHHHHhcCcc
Confidence            32224699999999999999999999999999974
>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A* Back     alignment and structure
>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A Back     alignment and structure
>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP} Back     alignment and structure
>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A* Back     alignment and structure
>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A Back     alignment and structure
>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus} Back     alignment and structure
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis} Back     alignment and structure
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A Back     alignment and structure
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* Back     alignment and structure
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V} Back     alignment and structure
>2fao_A Probable ATP-dependent DNA ligase; polymerase, primase, NHEJ, hydrolase/transferase complex; 1.50A {Pseudomonas aeruginosa} PDB: 2faq_A* 2far_A* Back     alignment and structure
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida} Back     alignment and structure
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 356
d2bvca2374 d.128.1.1 (A:105-478) Glutamine synthetase, C-term 3e-09
d1f52a2368 d.128.1.1 (A:101-468) Glutamine synthetase, C-term 7e-05
d1f52a1100 d.15.9.1 (A:1-100) Glutamine synthetase, N-termina 0.004
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 55.3 bits (132), Expect = 3e-09
 Identities = 44/217 (20%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 142 PLGWPVGGYPGPQGPYYCGVGADKALGRDIVNSHYKACLYAGINI-SGINGEVMPGQWEF 200
             G P  GY       Y  V A      D+ +      + +G  +  G +     GQ E 
Sbjct: 66  ADGSPNRGYKVRHKGGYFPV-APNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEI 124

Query: 201 QVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAH--------ANY 252
                  + + D + + +YI++      G  ++F PKP+ GD               A  
Sbjct: 125 NYQFNSLLHAADDMQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPL 184

Query: 253 STKSMRNDGGIDVIKKAIEKLGKRHGE--HIAAYGEGNERRLTGRHETADINTFSWGVAN 310
                   G  D  +  I  L                + +RL      A IN   +   N
Sbjct: 185 MYDETGYAGLSDTARHYIGGLLHHAPSLLAFTNPTVNSYKRLVP-GYEAPINL-VYSQRN 242

Query: 311 RGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMI 347
           R A +R+            E R P S+ +PY+  S +
Sbjct: 243 RSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAM 279
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 368 Back     information, alignment and structure
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
d1f52a2368 Glutamine synthetase, C-terminal domain {Salmonell 100.0
d2bvca2374 Glutamine synthetase, C-terminal domain {Mycobacte 100.0
d1f52a1100 Glutamine synthetase, N-terminal domain {Salmonell 99.51
d2bvca1100 Glutamine synthetase, N-terminal domain {Mycobacte 99.48
d1r8ga_ 368 Carboxylate-amine ligase YbdK {Escherichia coli [T 97.79
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamine synthetase catalytic domain
domain: Glutamine synthetase, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2.4e-70  Score=534.10  Aligned_cols=246  Identities=21%  Similarity=0.250  Sum_probs=208.4

Q ss_pred             CCChHHHHHHHHcCcccCCCcc--eEeeeeeEEEeccCC---------------CC--C-----CCCCCCCCCCCCCCCc
Q 018391          103 PTNKRFNAAKVFGHPDVVAEEP--WYGIEQEYTLLQKDI---------------NW--P-----LGWPVGGYPGPQGPYY  158 (356)
Q Consensus       103 ~~~PR~~Lkr~~~~l~~~G~~~--~~g~E~EF~l~~~~~---------------~~--~-----~~~~~~~~~~~~~~~~  158 (356)
                      +.|||++|||+++++++.|+.+  .+|+|+|||||++..               ..  .     .+...+..+...+.||
T Consensus         1 ~~dPR~iLkr~~~~l~~~G~~~~~~~g~E~EF~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (368)
T d1f52a2           1 DRDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWNSSTKYEGGNKGHRPGVKGGYF   80 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHHTSCSEEEEEEEEEEEEESEEEEEEETTEEEEEEECTTCGGGGGCCCTTCCCCCCCCTTCCSS
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCceEEEeceEEEEEeccccccCcCCCccccCCccccccCCCcccCCCCCCccccCCcee
Confidence            4799999999999999999965  559999999997521               00  0     0000011223445666


Q ss_pred             cccccchhhHHHHHHHHHHHHHHcCceeeeecCCCC-CCcEEEEeCCCchhhhhHHHHHHHHHHHHHHHHcCceEEeccc
Q 018391          159 CGVGADKALGRDIVNSHYKACLYAGINISGINGEVM-PGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPK  237 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~l~~~l~~~Gi~ve~~~~E~g-pGQ~Ei~l~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~aTFmpK  237 (356)
                      +....+.  ..+++.+|.+.|+.+||+|+++|+|+| ||||||++.|.++|+|||+++++|++||+||++||++||||||
T Consensus        81 ~~~~~~~--~~~~~~~i~~~l~~~Gi~ve~~~~E~~~~gq~Ei~~~~~~~l~aAD~~~~~k~~ik~iA~~~Gl~atFmpK  158 (368)
T d1f52a2          81 PVPPVDS--AQDIRSEMCLVMEQMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPK  158 (368)
T ss_dssp             BCTTSSC--CHHHHHHHHHHHHHTTCCEEEEEECSSTTTEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHTTCEEECCSC
T ss_pred             eeeccch--HHHHHHHHHHHHHhhccCeeeeecccccCCceeecCCCCchHHHHHHHHHHHHHHHHHHHHhcceeeEecc
Confidence            6655544  368999999999999999999999998 6999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCceeeeeecccccCC-------CCchh-HHHHHHHHHHHHHHHhhccccc---cccccCCCCCCCCCCCceee
Q 018391          238 PIKGDWNGAGAHANYSTKSMRN-------DGGID-VIKKAIEKLGKRHGEHIAAYGE---GNERRLTGRHETADINTFSW  306 (356)
Q Consensus       238 P~~~~~~GsG~H~H~Sl~~~~~-------~~g~~-~~~~fiaGl~L~h~~al~a~~~---nsYkRl~p~~~ap~~~~~~W  306 (356)
                      |+. +.+|||+|+|+|||+..+       ..+++ .+++||||| |+|+++++||++   ||||||+|++|||  ++++|
T Consensus       159 P~~-~~~GsG~HiH~Sl~~~~~n~~~~~~~~~lS~~~~~fiaGl-l~~~~~~~al~~PtvNSYkRl~~~~~aP--~~~~W  234 (368)
T d1f52a2         159 PMF-GDNGSGMHCHMSLAKNGTNLFSGDKYAGLSEQALYYIGGV-IKHAKAINALANPTTNSYKRLVPGYEAP--VMLAY  234 (368)
T ss_dssp             SST-TSCCCCEEEEEEEEETTEETTBCSSGGGBCHHHHHHHHHH-HHTHHHHHHHHSCSGGGGGTSSSCSSCC--CEEEE
T ss_pred             cCC-CCCCcceeEEEEeccCCCcccccccccccCHHHHHHHHHH-HHhhHHHHHHHCCCchHHhhccCCCcCC--ceeee
Confidence            999 589999999999997431       13454 789999999 999999999985   9999999999999  89999


Q ss_pred             ccCCCcceEeeccCCCCCCccEEEecCCCCCCCHHHHHHHHHHHhhcCC
Q 018391          307 GVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK  355 (356)
Q Consensus       307 G~~NR~a~vRvp~~~~~~~~~riE~R~~da~aNPYLalAailaAgl~g~  355 (356)
                      |.+||+++||||... ++..+|||+|++|++|||||++||+|+|||+|+
T Consensus       235 g~~NR~a~iRi~~~~-~~~~~riE~R~~da~aNPYL~lAa~laagl~Gi  282 (368)
T d1f52a2         235 SARNRSASIRIPVVA-SPKARRIEVRFPDPAANPYLCFAALLMAGLDGI  282 (368)
T ss_dssp             ESSCTTEEEECCCCS-CGGGCCEEECCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             ccCccccceeecccC-CCccceEEecCCCccHHHHHHHHHHHHHhhhhh
Confidence            999999999999643 223579999999999999999999999999985
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure