Citrus Sinensis ID: 018395

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN
Secondary Structure (PSIPRED)
ccccccccccccEEEcccEEEEEEccccccccccccEEEEEEEEccccccccccccccEEEEEEEcEEEEEEEcccccEEEEEEccccEEEcccccEEEEEEcccccEEEEEEccccccccccccEEEEEcccccccccccHHHHHHHccccHHHHHHHccccccccEEEcccccccccccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEEccccccccccccccccEEEEEEEcEEEEEEEEccccEEEEEEEEcccEEEEccccEEEEEEccccEEEEEEEEcccccccccccHHHHHHcccHHHHHHHccccHHHHHHHHHccccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEcccccEEEEEcccccHHHHHcccEEEEEEEccccEEccccccccEEEEEEEccEEEEEEcccccEEEEEEccccEEEEcccEEEEEEEcccccEEEEEEEEccccccccccccEEEcccccEcccccHHHHHHHHcccHHHHHHHHHcccccEEEEEccccEEccccccccccccccccccccccccccccEEEEEccccccHHHHccEEEEEEEEccccEEcccccccccEEEEEEEEccEEEEEEcccccEEEccEEccccEEEEccccEEEEEEcccccEEEEEEEcccccccHcccccHHHHHccHHHHHHHccccHHHHHHHHHcccccEEEccccc
Coil and Loop (DISEMBL)
meidltpklakqvyggnggsyhawcpnelpmlrqgNIGAAKLALEkngfalphycdsARVAYVLQGsgvagivlpekEEKVVAIKkgdgialpFGVVTWWYNKEDTELVVLFLGdtskghkageftnffltgangiftgFSTEFVSRawdldentvKTLVGkqtgkgivkldanaklpepkkehrdgmafnceeapldvdiknggrvvllntknlplvgevgcgadlvrldgkamcspgfscdsaLQVTYIVRGsgraqivgpdgkrVLETTVKAGNLFIVPRFYvvskiadpdglawfsiittpnpifthlagsigtwkslsPSVLEAAFNVPSDVEKQFRSKraneaiffpppn
Flexible Loop (DISEMBL)
MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKtlvgkqtgkgivkldanaklpepkkehrdgmAFNCEEAPLDVDIKNGGRVVLLNtknlplvgeVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSgraqivgpdgkrVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSkraneaiffpppn
Low Complexity Region (SEG)
MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN
Disordered region (IsUnstruct)
*********AKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKL*****************AFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNV***********************
Disordered Region (DISOPRED)
*****************GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQF*SKRA***IFFPP**
Disordered Region (DISEMBL)
MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN
Disordered Region (DISPRO)
**I*LTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
P07728	499	Glutelin type-A 1 OS=Oryz	no	no	0.890	0.635	0.248	2e-32
P07730	499	Glutelin type-A 2 OS=Oryz	no	no	0.890	0.635	0.248	2e-32
Q09151	496	Glutelin type-A 3 OS=Oryz	no	no	0.884	0.635	0.241	4e-29
P14614	500	Glutelin type-B 4 OS=Oryz	no	no	0.879	0.626	0.246	7e-29
Q6ERU3	500	Glutelin type-B 5 OS=Oryz	no	no	0.879	0.626	0.246	8e-29
Q9XHP0	459	11S globulin seed storage	N/A	no	0.938	0.727	0.214	3e-27
P12615	518	12S seed storage globulin	N/A	no	0.907	0.623	0.235	5e-27
Q02897	495	Glutelin type-B 2 OS=Oryz	no	no	0.879	0.632	0.232	2e-26
Q9ZWA9	451	12S seed storage protein	no	no	0.907	0.716	0.238	9e-26
P14323	499	Glutelin type-B 1 OS=Oryz	no	no	0.879	0.627	0.224	1e-25

>sp|P07728|GLUA1_ORYSJ Glutelin type-A 1 OS=Oryza sativa subsp. japonica GN=GLUA1 PE=1 SV=2

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 170/403 (42%), Gaps = 86/403 (21%)

Query: 37  IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP--------------------- 75
           +   +  +E  G  LPHY + A + Y++QG G+ G   P                     
Sbjct: 82  VSVVRRVIEPRGLLLPHYTNGASLVYIIQGRGITGPTFPGCPESYQQQFQQSGQAQLTES 141

Query: 76  --------EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGE--F 125
                   ++ +K+   ++GD IALP GV  W YN  +  +V +++ D + G    +   
Sbjct: 142 QSQSQKFKDEHQKIHRFRQGDVIALPAGVAHWCYNDGEVPVVAIYVTDLNNGANQLDPRQ 201

Query: 126 TNFFLTG---------------ANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IV 169
            +F L G               +  IF+GFSTE +S A  +     + L  +   +G IV
Sbjct: 202 RDFLLAGNKRNPQAYRREVEERSQNIFSGFSTELLSEALGVSSQVARQLQCQNDQRGEIV 261

Query: 170 KLDANAKLPEP--------------KKEHRDGMAFNCE---------------------- 193
           +++    L +P              ++ +++G     +                      
Sbjct: 262 RVEHGLSLLQPYASLQEQEQGQVQSRERYQEGQYQQSQYGSGCSNGLDETFCTLRVRQNI 321

Query: 194 EAPLDVDIKN--GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYI 251
           + P   D  N   GRV  LNT+N P++  V   A  V L   A+ SP ++ + A  V YI
Sbjct: 322 DNPNRADTYNPRAGRVTNLNTQNFPILSLVQMSAVKVNLYQNALLSPFWNIN-AHSVVYI 380

Query: 252 VRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTH 311
            +G  R Q+V  +GK V    ++ G L I+P+ Y V K A  +G A+ +  T PN + +H
Sbjct: 381 TQGRARVQVVNNNGKTVFNGELRRGQLLIIPQHYAVVKKAQREGCAYIAFKTNPNSMVSH 440

Query: 312 LAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPP 354
           +AG    +++L   VL  A+ +  +  ++ +  R +E   F P
Sbjct: 441 IAGKSSIFRALPNDVLANAYRISREEAQRLKHNRGDEFGAFTP 483

Seed storage protein.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|P07730|GLUA2_ORYSJ Glutelin type-A 2 OS=Oryza sativa subsp. japonica GN=GLUA2 PE=1 SV=1

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 169/403 (41%), Gaps = 86/403 (21%)

Query: 37  IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP--------------------- 75
           +   +  +E  G  LPHY + A + Y++QG G+ G   P                     
Sbjct: 82  VSVVRRVIEPRGLLLPHYTNGASLVYIIQGRGITGPTFPGCPETYQQQFQQSGQAQLTES 141

Query: 76  --------EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGE--F 125
                   ++ +K+   ++GD IALP GV  W YN  +  +V +++ D + G    +   
Sbjct: 142 QSQSHKFKDEHQKIHRFRQGDVIALPAGVAHWCYNDGEVPVVAIYVTDINNGANQLDPRQ 201

Query: 126 TNFFLTG---------------ANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IV 169
            +F L G               +  IF+GFSTE +S A+ +     + L  +   +G IV
Sbjct: 202 RDFLLAGNKRNPQAYRREVEEWSQNIFSGFSTELLSEAFGISNQVARQLQCQNDQRGEIV 261

Query: 170 KLDANAKLPEP-------------KKEHRDGMAFNCEEA--------------------- 195
           +++    L +P              +EH     +   +                      
Sbjct: 262 RVERGLSLLQPYASLQEQEQGQMQSREHYQEGGYQQSQYGSGCPNGLDETFCTMRVRQNI 321

Query: 196 --PLDVDIKN--GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYI 251
             P   D  N   GRV  LN++N P++  V   A  V L   A+ SP ++ + A  + YI
Sbjct: 322 DNPNRADTYNPRAGRVTNLNSQNFPILNLVQMSAVKVNLYQNALLSPFWNIN-AHSIVYI 380

Query: 252 VRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTH 311
            +G  + Q+V  +GK V    ++ G L IVP+ YVV K A  +G A+ +  T PN + +H
Sbjct: 381 TQGRAQVQVVNNNGKTVFNGELRRGQLLIVPQHYVVVKKAQREGCAYIAFKTNPNSMVSH 440

Query: 312 LAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPP 354
           +AG    +++L   VL  A+ +  +  ++ +  R +E   F P
Sbjct: 441 IAGKSSIFRALPTDVLANAYRISREEAQRLKHNRGDEFGAFTP 483

Seed storage protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q09151|GLUA3_ORYSJ Glutelin type-A 3 OS=Oryza sativa subsp. japonica GN=GLUA3 PE=2 SV=2

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 166/401 (41%), Gaps = 86/401 (21%)

Query: 41  KLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP------------------------- 75
           +  +E  G  LPHY + A + YV+QG G+ G   P                         
Sbjct: 85  RRVIEPRGLLLPHYSNGATLVYVIQGRGITGPTFPGCPETYQQQFQQSEQDQQLEGQSQS 144

Query: 76  ----EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD--TSKGHKAGEFTNFF 129
               ++ +K+   ++GD +ALP GV  W YN  D  +V +++ D   S         +FF
Sbjct: 145 HKFRDEHQKIHRFQQGDVVALPAGVAHWCYNDGDAPIVAIYVTDIYNSANQLDPRHRDFF 204

Query: 130 LTGANGI----------------FTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IVKLD 172
           L G N I                F GFS E +S A  +     + L  +   +G IV+++
Sbjct: 205 LAGNNKIGQQLYRYEARDNSKNVFGGFSVELLSEALGISSGVARQLQCQNDQRGEIVRVE 264

Query: 173 ANAKLPEP----------KKEHRD-------------------GMAFNCEEAPLDVDIKN 203
               L +P          + + RD                      F       ++D  N
Sbjct: 265 HGLSLLQPYASLQEQQQEQVQSRDYGQTQYQQKQLQGSCSNGLDETFCTMRVRQNIDNPN 324

Query: 204 --------GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGS 255
                    GR+  LN +  P++  V   A  V L   A+ SP ++ + A  V YI +G 
Sbjct: 325 LADTYNPRAGRITYLNGQKFPILNLVQMSAVKVNLYQNALLSPFWNIN-AHSVVYITQGR 383

Query: 256 GRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGS 315
            R Q+V  +GK V +  ++ G L I+P+ +VV K A  +G ++ ++ T P+ + +H+AG 
Sbjct: 384 ARVQVVNNNGKTVFDGELRRGQLLIIPQHHVVIKKAQREGCSYIALKTNPDSMVSHMAGK 443

Query: 316 IGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN 356
              +++L   V+  A+ +  +  ++ +  R +E   F P +
Sbjct: 444 NSIFRALPDDVVANAYRISREEARRLKHNRGDELGVFTPSH 484

Seed storage protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P14614|GLUB4_ORYSJ Glutelin type-B 4 OS=Oryza sativa subsp. japonica GN=GLUB4 PE=1 SV=1

 Score =  128 bits (321), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 164/397 (41%), Gaps = 84/397 (21%)

Query: 41  KLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP------------------------- 75
           +  +E  G  +P Y ++  + Y++QG G  G+  P                         
Sbjct: 85  RRVIEPQGLLVPRYSNTPGMVYIIQGRGSMGLTFPGCPATYQQQFQQFLPEGQSQSQKFR 144

Query: 76  EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGE--FTNFFLTGA 133
           ++ +K+   ++GD +ALP GV  W+YN+ D  +V L++ D +      E     F L G 
Sbjct: 145 DEHQKIHQFRQGDIVALPAGVAHWFYNEGDAPVVALYVFDLNNNANQLEPRQKEFLLAGN 204

Query: 134 NG-----------------IFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IVKLDANA 175
           N                  IF+GF+ E +S A  ++    K L G+   +G I+++    
Sbjct: 205 NNREQQMYGRSIEQHSGQNIFSGFNNELLSEALGVNALVAKRLQGQNDQRGEIIRVKNGL 264

Query: 176 KLPEP-----------------------KKEHRDGMAFN------CE-------EAPLDV 199
           KL  P                        +E +     N      C        E P   
Sbjct: 265 KLLRPAFAQQQEQAQQQEQAQAQYQVQYSEEQQPSTRCNGLDENFCTIKARLNIENPSHA 324

Query: 200 DIKN--GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGR 257
           D  N   GR+  LN++  P++  V   A  V L   A+ SP ++ + A  + YIV+G  R
Sbjct: 325 DTYNPRAGRITRLNSQKFPILNLVQLSATRVNLYQNAILSPFWNVN-AHSLVYIVQGHAR 383

Query: 258 AQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIG 317
            Q+V   GK V    ++ G L I+P+ YVV K A+ +G  + S  T  N + +HLAG   
Sbjct: 384 VQVVSNLGKTVFNGVLRPGQLLIIPQHYVVLKKAEHEGCQYISFKTNANSMVSHLAGKNS 443

Query: 318 TWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPP 354
            ++++   V+  A+ +  +  +  ++ R  E   F P
Sbjct: 444 IFRAMPVDVIANAYRISREQARSLKNNRGEELGAFTP 480

Seed storage protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6ERU3|GLUB5_ORYSJ Glutelin type-B 5 OS=Oryza sativa subsp. japonica GN=GLUB5 PE=2 SV=1

 Score =  128 bits (321), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 164/397 (41%), Gaps = 84/397 (21%)

Query: 41  KLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP------------------------- 75
           +  +E  G  +P Y ++  + Y++QG G  G+  P                         
Sbjct: 85  RRVIEPQGLLVPRYSNTPGMVYIIQGRGSMGLTFPGCPATYQQQFQQFLPEGQSQSQKFR 144

Query: 76  EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGE--FTNFFLTGA 133
           ++ +K+   ++GD +ALP GV  W+YN+ D  +V L++ D +      E     F L G 
Sbjct: 145 DEHQKIHQFRQGDIVALPAGVAHWFYNEGDAPVVALYVFDLNNNANQLEPRQKEFLLAGN 204

Query: 134 NG-----------------IFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IVKLDANA 175
           N                  IF+GF+ E +S A  ++    K L G+   +G I+++    
Sbjct: 205 NNREQQMYGRSIEQHSGQNIFSGFNNELLSEALGVNALVAKRLQGQNDQRGEIIRVKNGL 264

Query: 176 KLPEP-----------------------KKEHRDGMAFN------CE-------EAPLDV 199
           KL  P                        +E +     N      C        E P   
Sbjct: 265 KLLRPAFAQQQEQAQQQEQAQAQYQVQYSEEQQPSTRCNGLDENFCTIKARLNIENPSHA 324

Query: 200 DIKN--GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGR 257
           D  N   GR+  LN++  P++  V   A  V L   A+ SP ++ + A  + YIV+G  R
Sbjct: 325 DTYNPRAGRITRLNSQKFPILNLVQLSATRVNLYQNAILSPFWNVN-AHSLVYIVQGHAR 383

Query: 258 AQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIG 317
            Q+V   GK V    ++ G L I+P+ YVV K A+ +G  + S  T  N + +HLAG   
Sbjct: 384 VQVVSNLGKTVFNGVLRPGQLLIIPQHYVVLKKAEHEGCQYISFKTNANSMVSHLAGKNS 443

Query: 318 TWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPP 354
            ++++   V+  A+ +  +  +  ++ R  E   F P
Sbjct: 444 IFRAMPVDVIANAYRISREQARSLKNNRGEELGAFTP 480

Seed storage protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XHP0|11S2_SESIN 11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1

 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 176/406 (43%), Gaps = 72/406 (17%)

Query: 18  GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP-- 75
           GG+   W   +    +   I A +  +  NG +LP+Y  S R+ Y+ +G G+  I++P  
Sbjct: 52  GGTTELWDERQ-EQFQCAGIVAMRSTIRPNGLSLPNYHPSPRLVYIERGQGLISIMVPGC 110

Query: 76  ----------------------------EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTE 107
                                       +  +KV  +++GD +A+P G   W YN    +
Sbjct: 111 AETYQVHRSQRTMERTEASEQQDRGSVRDLHQKVHRLRQGDIVAIPSGAAHWCYNDGSED 170

Query: 108 LVVLFLGDTSK--GHKAGEFTNFFLTGA---------------NGIFTGFSTEFVSRAWD 150
           LV + + D +        +F  F+L G                + IF  F  E +S A++
Sbjct: 171 LVAVSINDVNHLSNQLDQKFRAFYLAGGVPRSGEQEQQARQTFHNIFRAFDAELLSEAFN 230

Query: 151 LDENTVKTLVGKQTGKGIVKLDANAKL-------PEPKKEHRD------------GMAFN 191
           + + T++ +  ++  +G++ + A  ++        E ++EHR              M F 
Sbjct: 231 VPQETIRRMQSEEEERGLIVM-ARERMTFVRPDEEEGEQEHRGRQLDNGLEETFCTMKFR 289

Query: 192 CE-EAPLDVDI--KNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQV 248
              E+  + DI  +  GRV +++   LP++  +   A+   L   A+ SP +S  +   +
Sbjct: 290 TNVESRREADIFSRQAGRVHVVDRNKLPILKYMDLSAEKGNLYSNALVSPDWSM-TGHTI 348

Query: 249 TYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPI 308
            Y+ RG  + Q+V  +G+ ++   V  G +F+VP++Y  +  A  +G  W +  TT +P+
Sbjct: 349 VYVTRGDAQVQVVDHNGQALMNDRVNQGEMFVVPQYYTSTARAGNNGFEWVAFKTTGSPM 408

Query: 309 FTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPP 354
            + LAG     +++   V+  ++ +  +  +  +  R +++    P
Sbjct: 409 RSPLAGYTSVIRAMPLQVITNSYQISPNQAQALKMNRGSQSFLLSP 454

Seed storage protein.

Sesamum indicum (taxid: 4182)

>sp|P12615|SSG1_AVESA 12S seed storage globulin 1 OS=Avena sativa PE=2 SV=1

 Score =  122 bits (305), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 167/421 (39%), Gaps = 98/421 (23%)

Query: 31  MLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP--------------- 75
             R   +   +  +E  G  LP Y ++  + Y+LQG G  G+  P               
Sbjct: 75  QFRCAGVSVIRRVIEPQGLLLPQYHNAPGLVYILQGRGFTGLTFPGCPATFQQQFQQFDQ 134

Query: 76  --------------EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHK 121
                         ++ ++V  IK+GD +ALP G+V W YN  D  +V +++ D +    
Sbjct: 135 ARFAQGQSKSQNLKDEHQRVHHIKQGDVVALPAGIVHWCYNDGDAPIVAVYVFDVNNNAN 194

Query: 122 AGE--FTNFFLTGAN--------GIFTGFSTE---------------------------- 143
             E     F L G N         IF+GFS +                            
Sbjct: 195 QLEPRQKEFLLAGNNKREQQFGQNIFSGFSVQLLSEALGISQQAAQKIQSQNDQRGEIIR 254

Query: 144 ----------FVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKK-EHRDGMA--- 189
                     FVS+   ++    + +  +Q      ++  + +  E +  +++ G +   
Sbjct: 255 VSQGLQFLKPFVSQQGPVEHQAYQPIQSQQEQSTQYQVGQSPQYQEGQSTQYQSGQSWDQ 314

Query: 190 -FN------CE-------EAPLDVDIKN--GGRVVLLNTKNLPLVGEVGCGADLVRLDGK 233
            FN      C        E P   D  N   GR+  LN+KN P +  V   A  V L   
Sbjct: 315 SFNGLEENFCSLEARQNIENPKRADTYNPRAGRITHLNSKNFPTLNLVQMSATRVNLYQN 374

Query: 234 AMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP 293
           A+ SP ++ + A  V ++++G  R Q+V   G+ V    ++ G L I+P+ YVV K A+ 
Sbjct: 375 AILSPYWNIN-AHSVMHMIQGRARVQVVNNHGQTVFNDILRRGQLLIIPQHYVVLKKAER 433

Query: 294 DGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFP 353
           +G  + S  TTPN + +++AG     ++L   VL  A+ +     +  ++ R  E   F 
Sbjct: 434 EGCQYISFKTTPNSMVSYIAGKTSILRALPVDVLANAYRISRQESQNLKNNRGEEFGAFT 493

Query: 354 P 354
           P
Sbjct: 494 P 494

This is a seed storage protein.

Avena sativa (taxid: 4498)

>sp|Q02897|GLUB2_ORYSJ Glutelin type-B 2 OS=Oryza sativa subsp. japonica GN=GLUB2 PE=2 SV=2

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 163/392 (41%), Gaps = 79/392 (20%)

Query: 41  KLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP------------------------- 75
           +  ++  G  +P Y ++  + Y++QG G  G+  P                         
Sbjct: 85  RRVIQPQGLLVPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFSSQGQSQSQKFR 144

Query: 76  EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGE--FTNFFLTGA 133
           ++ +K+   ++GD +ALP GV  W+YN  D  +V +++ D +      E     F L G 
Sbjct: 145 DEHQKIHQFRQGDVVALPAGVAHWFYNDGDASVVAIYVYDINNSANQLEPRQKEFLLAGN 204

Query: 134 NG-----------------IFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IVKLDANA 175
           N                  IF GF TE +S A  ++    K L  +   +G IV +    
Sbjct: 205 NNRVQQVYGSSIEQHSSQNIFNGFGTELLSEALGINTVAAKRLQSQNDQRGEIVHVKNGL 264

Query: 176 KLPEPK-----------------KEHR------DGMAFNCEEAPLDVDIKN--------- 203
           +L +P                   E +      +G+  N       V+I+N         
Sbjct: 265 QLLKPTLTQQQEQAQAQYQEVQYSEQQQTSSRWNGLEENFCTIKARVNIENPSRADSYNP 324

Query: 204 -GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG 262
             GR+  +N++  P++  +   A  V L   A+ SP ++ + A  + Y+++G  R Q+V 
Sbjct: 325 RAGRISSVNSQKFPILNLIQMSATRVNLYQNAILSPFWNVN-AHSLVYMIQGQSRVQVVS 383

Query: 263 PDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSL 322
             GK V +  ++ G L I+P+ Y V K A+ +G  + +I T  N   +HLAG    +++L
Sbjct: 384 NFGKTVFDGVLRPGQLLIIPQHYAVLKKAEREGCQYIAIKTNANAFVSHLAGKNSVFRAL 443

Query: 323 SPSVLEAAFNVPSDVEKQFRSKRANEAIFFPP 354
              V+  A+ +  +  +  ++ R  E   F P
Sbjct: 444 PVDVVANAYRISREQARSIKNNRGEEHGAFTP 475

Seed storage protein.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZWA9|CRU2_ARATH 12S seed storage protein CRU2 OS=Arabidopsis thaliana GN=CRU2 PE=1 SV=1

 Score =  117 bits (294), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 162/385 (42%), Gaps = 62/385 (16%)

Query: 30  PMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIV---------------- 73
           P LR   +  A++ L+ N   LP +     +AYV+QG GV G +                
Sbjct: 65  PELRCAGVTVARITLQPNSIFLPAFFSPPALAYVVQGEGVMGTIASGCPETFAEVEGSSG 124

Query: 74  ----------LPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD-TSKGHKA 122
                       +  +K+   ++GD  A   GV  WWYN+ D++ V++ + D T++ ++ 
Sbjct: 125 RGGGGDPGRRFEDMHQKLENFRRGDVFASLAGVSQWWYNRGDSDAVIVIVLDVTNRENQL 184

Query: 123 GEFTNFF-LTGA--------------NGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG 167
            +    F L G+              N  F+GF    ++ A+ ++  T K L  ++  +G
Sbjct: 185 DQVPRMFQLAGSRTQEEEQPLTWPSGNNAFSGFDPNIIAEAFKINIETAKQLQNQKDNRG 244

Query: 168 IVKLDANAKL----PEPKKEHRDGMAFNCEEAPLDVDIK--------------NGGRVVL 209
            + + AN  L    P P++  +DG+A   EE      I                 GR+  
Sbjct: 245 NI-IRANGPLHFVIPPPREWQQDGIANGIEETYCTAKIHENIDDPERSDHFSTRAGRIST 303

Query: 210 LNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVL 269
           LN+ NLP++  V   A    L    M  P ++ + A  V Y+  G  + Q+V  +G+ V 
Sbjct: 304 LNSLNLPVLRLVRLNALRGYLYSGGMVLPQWTAN-AHTVLYVTGGQAKIQVVDDNGQSVF 362

Query: 270 ETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEA 329
              V  G + ++P+ + VSK A   G  W S  T  N     L+G     +++   V++A
Sbjct: 363 NEQVGQGQIIVIPQGFAVSKTAGETGFEWISFKTNDNAYINTLSGQTSYLRAVPVDVIKA 422

Query: 330 AFNVPSDVEKQFRSKRANEAIFFPP 354
           ++ V  +  K+ +  +    +   P
Sbjct: 423 SYGVNEEEAKRIKFSQQETMLSMTP 447

Seed storage protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P14323|GLUB1_ORYSJ Glutelin type-B 1 OS=Oryza sativa subsp. japonica GN=GluB1-A PE=2 SV=3

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 161/396 (40%), Gaps = 83/396 (20%)

Query: 41  KLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP------------------------- 75
           +  ++  G  +P Y +   V Y++QG G  G+  P                         
Sbjct: 85  RRVIQPQGLLVPRYTNIPGVVYIIQGRGSMGLTFPGCPATYQQQFQQFSSQGQSQSQKFR 144

Query: 76  EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGE--FTNFFLTGA 133
           ++ +K+   ++GD +ALP GV  W+YN  D  +V +++ D +      E     F L G 
Sbjct: 145 DEHQKIHQFRQGDIVALPAGVAHWFYNDGDAPIVAVYVYDVNNNANQLEPRQKEFLLAGN 204

Query: 134 NG-------------------IFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IVKLDA 173
           N                    IF+GF  E +S A  ++    K L  +   +G I+ +  
Sbjct: 205 NNRAQQQQVYGSSIEQHSGQNIFSGFGVEMLSEALGINAVAAKRLQSQNDQRGEIIHVKN 264

Query: 174 NAKLPEPK-------------------------KEHRDGMAFNCEEAPLDVDIKN----- 203
             +L +P                              +G+  N     + V+I+N     
Sbjct: 265 GLQLLKPTLTQQQEQAQAQDQYQQVQYSERQQTSSRWNGLEENFCTIKVRVNIENPSRAD 324

Query: 204 -----GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRA 258
                 GR+  +N++  P++  +   A  V L   A+ SP ++ + A  + Y+++G  R 
Sbjct: 325 SYNPRAGRITSVNSQKFPILNLIQMSATRVNLYQNAILSPFWNVN-AHSLVYMIQGRSRV 383

Query: 259 QIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGT 318
           Q+V   GK V +  ++ G L I+P+ Y V K A+ +G  + +I T  N   +HLAG    
Sbjct: 384 QVVSNFGKTVFDGVLRPGQLLIIPQHYAVLKKAEREGCQYIAIKTNANAFVSHLAGKNSV 443

Query: 319 WKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPP 354
           +++L   V+  A+ +  +  +  ++ R  E   F P
Sbjct: 444 FRALPVDVVANAYRISREQARSLKNNRGEEHGAFTP 479

Seed storage protein.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
356539068	356	PREDICTED: glutelin type-A 1-like [Glyci	1.0	1.0	0.834	1e-176
255580564	358	nutrient reservoir, putative [Ricinus co	1.0	0.994	0.831	1e-176
356539076	356	PREDICTED: glutelin type-A 1-like [Glyci	1.0	1.0	0.831	1e-176
356542499	356	PREDICTED: glutelin type-A 1-like [Glyci	1.0	1.0	0.828	1e-173
388507332	356	unknown [Lotus japonicus]	0.997	0.997	0.825	1e-173
359807097	356	uncharacterized protein LOC100795038 [Gl	1.0	1.0	0.825	1e-173
357473729	356	Glutelin type-A [Medicago truncatula] gi	1.0	1.0	0.811	1e-172
357470433	356	Glutelin type-A [Medicago truncatula] gi	1.0	1.0	0.811	1e-172
225447318	356	PREDICTED: 12S seed storage globulin 1 [	1.0	1.0	0.806	1e-171
449465356	356	PREDICTED: glutelin type-A 1-like [Cucum	1.0	1.0	0.800	1e-171

>gi|356539068|ref|XP_003538022.1| PREDICTED: glutelin type-A 1-like [Glycine max]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 297/356 (83%), Positives = 326/356 (91%)

Query: 1   MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARV 60
           MEIDL+P+LAK+VY  NGGSYHAW P+ELPML +GNIGAAKLAL+KNGFALP Y DS++V
Sbjct: 1   MEIDLSPQLAKKVYESNGGSYHAWSPSELPMLHEGNIGAAKLALQKNGFALPQYSDSSKV 60

Query: 61  AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGH 120
           AYVLQGSGVAGIVLPE EEKV+AIKKGD +ALPFGV+TWWYNKEDTELVVLFLGDTSK H
Sbjct: 61  AYVLQGSGVAGIVLPESEEKVLAIKKGDALALPFGVITWWYNKEDTELVVLFLGDTSKAH 120

Query: 121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEP 180
           K GEFT+F+LTG+NGIFTGFSTEFV RAWDL+E  VKTLVGKQ+G GIVKL+ N  LPEP
Sbjct: 121 KTGEFTDFYLTGSNGIFTGFSTEFVGRAWDLEEKDVKTLVGKQSGNGIVKLEGNINLPEP 180

Query: 181 KKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGF 240
           K+EHR GMA NCEEAPLDVDIKNGGRVV+LNTKNLPLVGEVG GADLVRLDGKAMCSPGF
Sbjct: 181 KEEHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGKAMCSPGF 240

Query: 241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300
           SCDSA QVTYIVRGSGRAQ+VG DG+RVLETTVKAGNLFIVPRF+VVSKIAD DGL WFS
Sbjct: 241 SCDSAFQVTYIVRGSGRAQVVGADGRRVLETTVKAGNLFIVPRFFVVSKIADSDGLEWFS 300

Query: 301 IITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN 356
           IITTPNP+FTHLAGSIGTWK+LSP+VL AAFNV + +E+ FRSKR  +AIFFPPPN
Sbjct: 301 IITTPNPVFTHLAGSIGTWKALSPTVLRAAFNVDAGLEQLFRSKRNADAIFFPPPN 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580564|ref|XP_002531106.1| nutrient reservoir, putative [Ricinus communis] gi|223529302|gb|EEF31271.1| nutrient reservoir, putative [Ricinus communis]

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 296/356 (83%), Positives = 325/356 (91%)

Query: 1   MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARV 60
           MEIDL+P+LAK+VYGG+GGSYHAWCP+EL MLR+GNIGAAKLALEK+GFALP Y DSA+V
Sbjct: 3   MEIDLSPRLAKKVYGGDGGSYHAWCPSELAMLREGNIGAAKLALEKDGFALPRYSDSAKV 62

Query: 61  AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGH 120
           AYVLQG+GVAGIVLPEKEEKV+AIKKGD +ALPFGVVTWWYNKEDTELVVLF+GDT+KGH
Sbjct: 63  AYVLQGNGVAGIVLPEKEEKVIAIKKGDAVALPFGVVTWWYNKEDTELVVLFMGDTAKGH 122

Query: 121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEP 180
           KAGEFT+FFLTG NGIFTGFS+EFV RAWDLDE TV TLV  Q+GKGIVKL A+ K+PEP
Sbjct: 123 KAGEFTDFFLTGTNGIFTGFSSEFVGRAWDLDEKTVGTLVNNQSGKGIVKLAASFKMPEP 182

Query: 181 KKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGF 240
           KKEHR+GM +NCEEAPLDVDIKNGGRVV+LNTKNLPLV EVG GADLVRLDG AMCSPGF
Sbjct: 183 KKEHRNGMVYNCEEAPLDVDIKNGGRVVVLNTKNLPLVAEVGLGADLVRLDGGAMCSPGF 242

Query: 241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300
           SCDSALQVTYIVRGSGR Q+VG DG+RVLETTVKAGNLFIVPRFYVVSKI DPDG+ WFS
Sbjct: 243 SCDSALQVTYIVRGSGRVQVVGVDGRRVLETTVKAGNLFIVPRFYVVSKICDPDGMDWFS 302

Query: 301 IITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN 356
           IITTPNPIFTHLAG    WK+LSP VLEA+F V  +VEK FRSKR ++ IFFPPPN
Sbjct: 303 IITTPNPIFTHLAGRTSVWKALSPQVLEASFKVSPEVEKHFRSKRMSDEIFFPPPN 358

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539076|ref|XP_003538026.1| PREDICTED: glutelin type-A 1-like [Glycine max]

 Score =  622 bits (1605), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 296/356 (83%), Positives = 326/356 (91%)

Query: 1   MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARV 60
           MEIDL+P+LAK+VY  NGGSYHAW P+ELPML +GNIGAAKLAL+KNGFALP Y DS++V
Sbjct: 1   MEIDLSPQLAKKVYESNGGSYHAWSPSELPMLHEGNIGAAKLALQKNGFALPQYSDSSKV 60

Query: 61  AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGH 120
           AYVLQGSGVAGIVLPE EEKV+AIKKGD +ALPFGV+TWWYNKEDTELVVLFLGDTSK H
Sbjct: 61  AYVLQGSGVAGIVLPESEEKVLAIKKGDALALPFGVITWWYNKEDTELVVLFLGDTSKAH 120

Query: 121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEP 180
           K GEFT+F+LTG+NGIFTGFSTEFV RAWDL+E  VKTLVGKQ+G GIVKL+ N  LPEP
Sbjct: 121 KTGEFTDFYLTGSNGIFTGFSTEFVGRAWDLEEKDVKTLVGKQSGNGIVKLEGNINLPEP 180

Query: 181 KKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGF 240
           K+EHR GMA NCEEAPLDVDIKNGGRVV+LNTKNLPLVGEVG GADLVRLDGKAMCSPGF
Sbjct: 181 KEEHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGKAMCSPGF 240

Query: 241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300
           SCDSA QVTYIVRGSGRAQ+VG DG+RVLETTVKAGNLFIVPRF+VVSKIAD DGL WFS
Sbjct: 241 SCDSAFQVTYIVRGSGRAQVVGADGRRVLETTVKAGNLFIVPRFFVVSKIADSDGLEWFS 300

Query: 301 IITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN 356
           IITTPNP+FTHLAGSIG WK+LSP+VL+AAFNV + +E+ FRSKR  +AIFFPPPN
Sbjct: 301 IITTPNPVFTHLAGSIGAWKALSPTVLQAAFNVDAGLEQLFRSKRNADAIFFPPPN 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542499|ref|XP_003539704.1| PREDICTED: glutelin type-A 1-like [Glycine max]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 295/356 (82%), Positives = 324/356 (91%)

Query: 1   MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARV 60
           MEIDL+P+LAK+VY  NGGSYHAW P+ELPML +GNIGAAKLAL+KNGFALP Y DS++V
Sbjct: 1   MEIDLSPQLAKKVYESNGGSYHAWSPSELPMLPEGNIGAAKLALQKNGFALPCYSDSSKV 60

Query: 61  AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGH 120
           AYVLQGSGVAGIVLPE EEKVVAIKKGD +ALPFGV+TWWYNKEDTELVVLFLGDTSK H
Sbjct: 61  AYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVITWWYNKEDTELVVLFLGDTSKAH 120

Query: 121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEP 180
           K GEFT+F+LTG+NGIFTGFSTEFV RAWDL+E  VKTLVGKQ+GK IVKL+ N  LPEP
Sbjct: 121 KTGEFTDFYLTGSNGIFTGFSTEFVGRAWDLEEKDVKTLVGKQSGKVIVKLEGNINLPEP 180

Query: 181 KKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGF 240
           K+EHR GMA NCEEAPLDVDIKNGGRVV+LNTKNLPLVGEVG GADLVRLDG AMCSPGF
Sbjct: 181 KEEHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGNAMCSPGF 240

Query: 241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300
           SCDSA QVTYIVRGSGRAQ+VG DG RVLETTVKAGNLFIVPRF+VVSKIAD DGL WFS
Sbjct: 241 SCDSAFQVTYIVRGSGRAQVVGADGCRVLETTVKAGNLFIVPRFFVVSKIADSDGLEWFS 300

Query: 301 IITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN 356
           IITTPNP+FTHLAGSIG WK+LSP+VL+A+FNV + +E+ FRSKR  +AIFFPPPN
Sbjct: 301 IITTPNPVFTHLAGSIGAWKALSPTVLQASFNVDAGLEQLFRSKRNADAIFFPPPN 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507332|gb|AFK41732.1| unknown [Lotus japonicus]

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 293/355 (82%), Positives = 322/355 (90%)

Query: 1   MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARV 60
           M IDL+P+LAK++YGGNGGSYHAW P+ELPMLR+GNIGA+KLAL+KNGFALP Y DS++V
Sbjct: 1   MAIDLSPQLAKKLYGGNGGSYHAWSPSELPMLREGNIGASKLALQKNGFALPRYSDSSKV 60

Query: 61  AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGH 120
           AYVLQG+GV GIVLPE EEKVVAIKKGD +ALPFGVVTWWYNKEDTELVVLFLGDTSK H
Sbjct: 61  AYVLQGTGVVGIVLPESEEKVVAIKKGDALALPFGVVTWWYNKEDTELVVLFLGDTSKAH 120

Query: 121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEP 180
           KAGEFT+F+LTG+NGIFTGFSTEFV RAWDL EN VKTLVG Q+ KGIVKL+ N  +PEP
Sbjct: 121 KAGEFTDFYLTGSNGIFTGFSTEFVGRAWDLKENEVKTLVGNQSAKGIVKLEGNITIPEP 180

Query: 181 KKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGF 240
           K +HRDGMA NC EA LDVDIK+GGRVV+LNTKNLPLVGEVG GADLVRLDG AMCSPGF
Sbjct: 181 KPDHRDGMALNCLEAALDVDIKDGGRVVVLNTKNLPLVGEVGLGADLVRLDGGAMCSPGF 240

Query: 241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300
           SCDSALQVTYIVRGSGR Q+VG DGKRVLETTVKAGNLFIVPRFYVVSKIADP+GL WFS
Sbjct: 241 SCDSALQVTYIVRGSGRVQVVGVDGKRVLETTVKAGNLFIVPRFYVVSKIADPEGLEWFS 300

Query: 301 IITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP 355
           II+TPNPIFTHLAGS   WK+LSP+VL+AAFNV S VE+ FRSKR  +AIFFPPP
Sbjct: 301 IISTPNPIFTHLAGSFSVWKALSPTVLQAAFNVDSGVEQLFRSKRTADAIFFPPP 355

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807097|ref|NP_001241090.1| uncharacterized protein LOC100795038 [Glycine max] gi|255641424|gb|ACU20988.1| unknown [Glycine max]

 Score =  613 bits (1580), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 294/356 (82%), Positives = 323/356 (90%)

Query: 1   MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARV 60
           M+IDL+P+L K+VYG NGGSY+AW P++LPML QGNIGAAKLAL KN FALP Y DS++V
Sbjct: 1   MDIDLSPQLPKKVYGANGGSYYAWSPSDLPMLHQGNIGAAKLALNKNAFALPRYSDSSKV 60

Query: 61  AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGH 120
           AYVLQGSGVAGIVLPE EEKVVAIKKGD +ALPFGVVTWWYNKE+TELVVLFLGDTSK H
Sbjct: 61  AYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVVTWWYNKEETELVVLFLGDTSKAH 120

Query: 121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEP 180
           KAGEFT+FFLTG+NGIFTGFSTEFV RAWDL+E+ VKTLVGKQ  KGIV+L+ N  LP+P
Sbjct: 121 KAGEFTDFFLTGSNGIFTGFSTEFVGRAWDLEESHVKTLVGKQPAKGIVQLEGNISLPDP 180

Query: 181 KKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGF 240
           K EHR+GMA NCEEAPLDVDIK GGRVV+LNTKNLPLVGEVG GADLVRLDG+AMCSPGF
Sbjct: 181 KPEHRNGMALNCEEAPLDVDIKGGGRVVVLNTKNLPLVGEVGLGADLVRLDGRAMCSPGF 240

Query: 241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300
           SCDSALQVTYIVRGSGR Q+VG DG+RVLETTVKAGNLFIVPRF+VVSKIADPDGL WFS
Sbjct: 241 SCDSALQVTYIVRGSGRVQVVGVDGRRVLETTVKAGNLFIVPRFFVVSKIADPDGLEWFS 300

Query: 301 IITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN 356
           IITTPNPIFTHLAGS   WK+LSPSVL+AAFNV  +VE+ FRSKR  +AIFFPPPN
Sbjct: 301 IITTPNPIFTHLAGSSSVWKALSPSVLQAAFNVDPEVEQLFRSKRTADAIFFPPPN 356

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473729|ref|XP_003607149.1| Glutelin type-A [Medicago truncatula] gi|355508204|gb|AES89346.1| Glutelin type-A [Medicago truncatula]

 Score =  609 bits (1571), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 289/356 (81%), Positives = 325/356 (91%)

Query: 1   MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARV 60
           M+IDL+P+LAK+VYGG+GGSY+AW P+ELPMLR+GNIGAAKLAL KNGFA+P Y DS++V
Sbjct: 1   MDIDLSPQLAKKVYGGDGGSYYAWSPSELPMLREGNIGAAKLALHKNGFAVPRYSDSSKV 60

Query: 61  AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGH 120
           AYVLQGSGVAGIVLPE +EKVVAIK+GD +ALPFGVVTWWYNKEDTELVVLFLGDTSK H
Sbjct: 61  AYVLQGSGVAGIVLPESKEKVVAIKEGDALALPFGVVTWWYNKEDTELVVLFLGDTSKAH 120

Query: 121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEP 180
           KAGEFT+FFLTG NGIFTGFSTEFV RAWDLDEN VKTLVGKQ+ KGIVKLD    LP+P
Sbjct: 121 KAGEFTDFFLTGPNGIFTGFSTEFVGRAWDLDENNVKTLVGKQSAKGIVKLDGKISLPQP 180

Query: 181 KKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGF 240
           K+EH+ GMA NC EAPLDVDIKNGGRVV+LNTKNLPLVGEVG GADLVR+DG++MCSPGF
Sbjct: 181 KEEHKKGMALNCLEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRIDGRSMCSPGF 240

Query: 241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300
           SCDSALQVTYIVRGSGR Q+VG DGKRVLETT+K+G+LFIVPRF+VVSKIAD DG+ WFS
Sbjct: 241 SCDSALQVTYIVRGSGRVQVVGVDGKRVLETTLKSGDLFIVPRFFVVSKIADNDGMEWFS 300

Query: 301 IITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN 356
           IITTPNP+FTH+AGS   WK+LSP+VL+AAFNV  +VEK FRSKR  +AIFFPPPN
Sbjct: 301 IITTPNPVFTHMAGSSSVWKALSPTVLQAAFNVDPEVEKLFRSKRTADAIFFPPPN 356

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357470433|ref|XP_003605501.1| Glutelin type-A [Medicago truncatula] gi|355506556|gb|AES87698.1| Glutelin type-A [Medicago truncatula]

 Score =  608 bits (1569), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 289/356 (81%), Positives = 325/356 (91%)

Query: 1   MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARV 60
           M+I+L+P+LAK+VYGG+GGSY+AW P+ELPMLR+GNIGAAKLALEKNGFA+P Y DS++V
Sbjct: 1   MDINLSPQLAKKVYGGDGGSYYAWSPSELPMLREGNIGAAKLALEKNGFAVPRYSDSSKV 60

Query: 61  AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGH 120
           AYVLQGSGVAGIVLPE +EKVVAIK+GD +ALPFGVVTWWYNKEDTELVVLFLGDTSK H
Sbjct: 61  AYVLQGSGVAGIVLPESKEKVVAIKEGDALALPFGVVTWWYNKEDTELVVLFLGDTSKAH 120

Query: 121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEP 180
           KAGEFT+FFLTG NGIFTGFSTEFV RAWDLDEN VKTLVGKQ+ KGIVKLD    LP+P
Sbjct: 121 KAGEFTDFFLTGPNGIFTGFSTEFVGRAWDLDENNVKTLVGKQSAKGIVKLDGKISLPQP 180

Query: 181 KKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGF 240
            +EH+ GMA NC EAPLDVDIKNGGRVV+LNTKNLPLVGEVG GADLVR+DG++MCSPGF
Sbjct: 181 IEEHKKGMALNCLEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRIDGRSMCSPGF 240

Query: 241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300
           SCDSALQVTYIVRGSGR Q+VG DGKRVLETT+KAG+LFIVPRF+VVSKIAD DG+ WFS
Sbjct: 241 SCDSALQVTYIVRGSGRVQVVGVDGKRVLETTLKAGDLFIVPRFFVVSKIADNDGMEWFS 300

Query: 301 IITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN 356
           IITTPNP+FTH+AGS   WK+LSP+VL+AAFNV  +VEK FRSKR  +AIFFPPPN
Sbjct: 301 IITTPNPVFTHMAGSSSVWKALSPTVLQAAFNVDPEVEKLFRSKRTADAIFFPPPN 356

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447318|ref|XP_002280191.1| PREDICTED: 12S seed storage globulin 1 [Vitis vinifera] gi|297739302|emb|CBI28953.3| unnamed protein product [Vitis vinifera]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 287/356 (80%), Positives = 322/356 (90%)

Query: 1   MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARV 60
           ME+DL+PKLAK+++G NGGSY AWCP+ELPMLR+GNIGA+KLALEK+GFALP Y DS++V
Sbjct: 1   MELDLSPKLAKKLFGENGGSYFAWCPSELPMLREGNIGASKLALEKHGFALPRYSDSSKV 60

Query: 61  AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGH 120
           AYVLQGSGVAGIVLPE EEKV+AIKKGD IALPFGVVTWWYNKEDTELVVLFLG+TSK H
Sbjct: 61  AYVLQGSGVAGIVLPESEEKVIAIKKGDAIALPFGVVTWWYNKEDTELVVLFLGETSKAH 120

Query: 121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEP 180
           KAGEFT+FFLTG  G+ TGF+TEFV+RAWDL+E   K LV KQ+G GIVKL    K+PEP
Sbjct: 121 KAGEFTDFFLTGTTGLMTGFTTEFVARAWDLEEKVAKLLVEKQSGVGIVKLADTFKMPEP 180

Query: 181 KKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGF 240
           K EHR+GMA NCEEAPLD+DIKNGGRVV+LNTKNLPLVGEVG GADLVRLDG AMCSPGF
Sbjct: 181 KIEHRNGMALNCEEAPLDIDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGGAMCSPGF 240

Query: 241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300
           SCDSALQVTY+VRGSGR Q+VG DGKRVLETT+KAGNLFIVPRF+VVSKIADPDG+ WFS
Sbjct: 241 SCDSALQVTYVVRGSGRVQVVGVDGKRVLETTLKAGNLFIVPRFFVVSKIADPDGMEWFS 300

Query: 301 IITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN 356
           II+TPNPIFT+LAG  G WK+LSP VLEAAFN+P D EKQFRSKR ++A+FFPPPN
Sbjct: 301 IISTPNPIFTNLAGKTGVWKALSPQVLEAAFNIPPDAEKQFRSKRNSDAVFFPPPN 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465356|ref|XP_004150394.1| PREDICTED: glutelin type-A 1-like [Cucumis sativus]

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 285/356 (80%), Positives = 323/356 (90%)

Query: 1   MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARV 60
           MEIDLTP+L K++YG +GGSY+AW P ELPMLR+GNIGA+KLALEKNGFALP Y DSA+V
Sbjct: 1   MEIDLTPQLPKKIYGSDGGSYYAWSPKELPMLREGNIGASKLALEKNGFALPRYSDSAKV 60

Query: 61  AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGH 120
           AYVLQG+GVAGI+LPE EEKV+AIKKGD IALPFGVVTWW+NKE T+LVVLFLGDTSK H
Sbjct: 61  AYVLQGNGVAGIILPESEEKVIAIKKGDAIALPFGVVTWWFNKEATDLVVLFLGDTSKAH 120

Query: 121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEP 180
           K+GEFT+FFLTGANGIFTGFSTEFV RAWD+DE +VK+LV  QTG GIVKL    K+PEP
Sbjct: 121 KSGEFTDFFLTGANGIFTGFSTEFVGRAWDMDEASVKSLVKNQTGTGIVKLKEGTKMPEP 180

Query: 181 KKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGF 240
           KKEHR+GMA NCEEAPLDVD+KNGGRVV+LNTKNLPLVGEVG GADLVRLDG AMCSPGF
Sbjct: 181 KKEHRNGMALNCEEAPLDVDVKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGF 240

Query: 241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300
           SCDSALQVTYIV+GSGRA++VG DGK+VLET VKAGNLFIVPRF+VVSKI DP+G+ WFS
Sbjct: 241 SCDSALQVTYIVKGSGRAEVVGVDGKKVLETRVKAGNLFIVPRFFVVSKIGDPEGMEWFS 300

Query: 301 IITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN 356
           II+TPNP+FTHLAGSIG WK+LSP V+EAAFNV +D+ K F SKR+++AIFFPP N
Sbjct: 301 IISTPNPVFTHLAGSIGVWKALSPEVIEAAFNVEADLVKNFSSKRSSDAIFFPPSN 356

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
TAIR|locus:2026545	356	AT1G07750 "AT1G07750" [Arabido	1.0	1.0	0.783	3.1e-154
TAIR|locus:2065516	356	AT2G28680 "AT2G28680" [Arabido	1.0	1.0	0.783	6.7e-152
UNIPROTKB|Q9XHP0	459	Q9XHP0 "11S globulin seed stor	0.438	0.339	0.229	2.1e-22
UNIPROTKB|Q9M4Q7	353	Q9M4Q7 "Seed storage protein"	0.441	0.444	0.318	6.7e-22
TAIR|locus:2024234	455	CRU2 "AT1G03880" [Arabidopsis	0.410	0.320	0.248	2.3e-18
TAIR|locus:2024219	451	AT1G03890 [Arabidopsis thalian	0.617	0.487	0.243	3.9e-18
TAIR|locus:2121308	524	CRU3 "AT4G28520" [Arabidopsis	0.410	0.278	0.283	1.8e-16
TAIR|locus:2167654	472	CRA1 "CRUCIFERINA" [Arabidopsi	0.376	0.283	0.264	1.1e-15
TAIR|locus:2056568	511	AT2G28490 [Arabidopsis thalian	0.424	0.295	0.306	4.3e-13
TAIR|locus:2094404	486	PAP85 [Arabidopsis thaliana (t	0.387	0.283	0.302	1.9e-10

TAIR|locus:2026545 AT1G07750 "AT1G07750" [Arabidopsis thaliana (taxid:3702)]

 Score = 1504 (534.5 bits), Expect = 3.1e-154, P = 3.1e-154
 Identities = 279/356 (78%), Positives = 313/356 (87%)

Query:     1 MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARV 60
             ME+DLTPKL K+VYGG+GGSY AWCP ELPML+QGNIGAAKLALEKNGFA+P Y DS++V
Sbjct:     1 MELDLTPKLPKKVYGGDGGSYSAWCPEELPMLKQGNIGAAKLALEKNGFAVPRYSDSSKV 60

Query:    61 AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGH 120
             AYVLQGSG AGIVLPEKEEKV+AIK+GD IALPFGVVTWW+N ED ELV+LFLG+T KGH
Sbjct:    61 AYVLQGSGTAGIVLPEKEEKVIAIKQGDSIALPFGVVTWWFNNEDPELVILFLGETHKGH 120

Query:   121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEP 180
             KAG+FT F+LTG NGIFTGFSTEFV RAWDLDENTVK LVG QTG GIVKLDA  K+P+P
Sbjct:   121 KAGQFTEFYLTGTNGIFTGFSTEFVGRAWDLDENTVKKLVGSQTGNGIVKLDAGFKMPQP 180

Query:   181 KKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGF 240
             K+E+R G   NC EAPLDVDIK+GGRVV+LNTKNLPLVGEVG GADLVR+D  +MCSPGF
Sbjct:   181 KEENRAGFVLNCLEAPLDVDIKDGGRVVVLNTKNLPLVGEVGFGADLVRIDAHSMCSPGF 240

Query:   241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300
             SCDSALQVTYIV GSGR Q+VG DGKRVLET +KAG+LFIVPRF+VVSKIAD DG++WFS
Sbjct:   241 SCDSALQVTYIVGGSGRVQVVGGDGKRVLETHIKAGSLFIVPRFFVVSKIADADGMSWFS 300

Query:   301 IITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN 356
             I+TTP+PIFTHLAG+   WKSLSP VL+AAF V  +VEK FRS R + AIFFPP N
Sbjct:   301 IVTTPDPIFTHLAGNTSVWKSLSPEVLQAAFKVAPEVEKSFRSTRTSSAIFFPPSN 356

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

GO:0005507 "copper ion binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2065516 AT2G28680 "AT2G28680" [Arabidopsis thaliana (taxid:3702)]

 Score = 1482 (526.7 bits), Expect = 6.7e-152, P = 6.7e-152
 Identities = 279/356 (78%), Positives = 310/356 (87%)

Query:     1 MEIDLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARV 60
             ME+DL+P+L K+VYGG+GGSY AWCP ELPMLR GNIGA+KLALEK G ALP Y DS +V
Sbjct:     1 MELDLSPRLPKKVYGGDGGSYFAWCPEELPMLRDGNIGASKLALEKYGLALPRYSDSPKV 60

Query:    61 AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGH 120
             AYVLQG+G AGIVLPEKEEKV+AIKKGD IALPFGVVTWW+N EDTELVVLFLG+T KGH
Sbjct:    61 AYVLQGAGTAGIVLPEKEEKVIAIKKGDSIALPFGVVTWWFNNEDTELVVLFLGETHKGH 120

Query:   121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEP 180
             KAG+FT+F+LTG+NGIFTGFSTEFV RAWDLDE TVK LVG QTG GIVK+DA+ K+PEP
Sbjct:   121 KAGQFTDFYLTGSNGIFTGFSTEFVGRAWDLDETTVKKLVGSQTGNGIVKVDASLKMPEP 180

Query:   181 KKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGF 240
             KK  R G   NC EAPLDVDIK+GGRVV+LNTKNLPLVGEVG GADLVR+DG +MCSPGF
Sbjct:   181 KKGDRKGFVLNCLEAPLDVDIKDGGRVVVLNTKNLPLVGEVGFGADLVRIDGHSMCSPGF 240

Query:   241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS 300
             SCDSALQVTYIV GSGR QIVG DGKRVLET VKAG LFIVPRF+VVSKIAD DGL+WFS
Sbjct:   241 SCDSALQVTYIVGGSGRVQIVGADGKRVLETHVKAGVLFIVPRFFVVSKIADSDGLSWFS 300

Query:   301 IITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN 356
             I+TTP+PIFTHLAG    WK+LSP VL+AAF V  +VEK FRSKR ++AIFF P N
Sbjct:   301 IVTTPDPIFTHLAGRTSVWKALSPEVLQAAFKVDPEVEKAFRSKRTSDAIFFSPSN 356

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

UNIPROTKB|Q9XHP0 Q9XHP0 "11S globulin seed storage protein 2" [Sesamum indicum (taxid:4182)]

 Score = 176 (67.0 bits), Expect = 2.1e-22, Sum P(4) = 2.1e-22
 Identities = 36/157 (22%), Positives = 79/157 (50%)

Query:   198 DVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGR 257
             D+  +  GRV +++   LP++  +   A+   L   A+ SP +S  +   + Y+ RG  +
Sbjct:   299 DIFSRQAGRVHVVDRNKLPILKYMDLSAEKGNLYSNALVSPDWSM-TGHTIVYVTRGDAQ 357

Query:   258 AQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIG 317
              Q+V  +G+ ++   V  G +F+VP++Y  +  A  +G  W +  TT +P+ + LAG   
Sbjct:   358 VQVVDHNGQALMNDRVNQGEMFVVPQYYTSTARAGNNGFEWVAFKTTGSPMRSPLAGYTS 417

Query:   318 TWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPP 354
               +++   V+  ++ +  +  +  +  R +++    P
Sbjct:   418 VIRAMPLQVITNSYQISPNQAQALKMNRGSQSFLLSP 454

GO:0042735 "protein body" evidence=NAS

GO:0045735 "nutrient reservoir activity" evidence=NAS

GO:0051259 "protein oligomerization" evidence=NAS

UNIPROTKB|Q9M4Q7 Q9M4Q7 "Seed storage protein" [Ricinus communis (taxid:3988)]

 Score = 206 (77.6 bits), Expect = 6.7e-22, Sum P(3) = 6.7e-22
 Identities = 51/160 (31%), Positives = 79/160 (49%)

Query:   196 PLDVDIKN--GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVR 253
             P + DI N   GRV  +N+ NLP++  +        L   A+ +P ++ + A  + YI R
Sbjct:   190 PSEADIYNPRAGRVTSVNSHNLPILRYLQLSIQKAVLYKNALMTPHWNIN-AHSIRYITR 248

Query:   254 GSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLA 313
             GSGR QIV  +G  V +  V+ G +F VP+ +VV   A  +GL W S  T  N     LA
Sbjct:   249 GSGRVQIVNENGDSVFDGQVQRGQMFTVPQNFVVITKASNEGLEWVSFKTNDNAKINQLA 308

Query:   314 GSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFP 353
             G +   +S+   V+  AF V  +  ++ +  R    +  P
Sbjct:   309 GRVSAIRSMPEEVVANAFQVSVEDARRLKDNRQEVTLLSP 348

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2024234 CRU2 "AT1G03880" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 2.3e-18, Sum P(4) = 2.3e-18
 Identities = 37/149 (24%), Positives = 65/149 (43%)

Query:   196 PLDVDIKNG--GRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVR 253
             P D D+     G +  LN+ NLP++  +   A    +   AM  P ++ + A    Y+  
Sbjct:   287 PSDADVYKPSLGYISTLNSYNLPILRLLRLSALRGSIRKNAMVLPQWNVN-ANAALYVTN 345

Query:   254 GSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLA 313
             G    Q+V  +G+RV +  + +G L +VP+ + V K A  +   W    T  N     LA
Sbjct:   346 GKAHIQMVNDNGERVFDQEISSGQLLVVPQGFSVMKHAIGEQFEWIEFKTNENAQVNTLA 405

Query:   314 GSIGTWKSLSPSVLEAAFNVPSDVEKQFR 342
             G     + L   V+   + +  +  K+ +
Sbjct:   406 GRTSVMRGLPLEVITNGYQISPEEAKRVK 434

GO:0009845 "seed germination" evidence=RCA;TAS

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS;IDA

GO:0010431 "seed maturation" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2024219 AT1G03890 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
 Identities = 58/238 (24%), Positives = 109/238 (45%)

Query:   134 NGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IVKLDA--NAKLPEPKKEHRDGMAF 190
             N  F+GF    ++ A+ ++  T K L  ++  +G I++ +   +  +P P++  +DG+A 
Sbjct:   211 NNAFSGFDPNIIAEAFKINIETAKQLQNQKDNRGNIIRANGPLHFVIPPPREWQQDGIAN 270

Query:   191 NCEE----APLDVDIKN----------GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMC 236
               EE    A +  +I +           GR+  LN+ NLP++  V   A    L    M 
Sbjct:   271 GIEETYCTAKIHENIDDPERSDHFSTRAGRISTLNSLNLPVLRLVRLNALRGYLYSGGMV 330

Query:   237 SPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGL 296
              P ++ + A  V Y+  G  + Q+V  +G+ V    V  G + ++P+ + VSK A   G 
Sbjct:   331 LPQWTAN-AHTVLYVTGGQAKIQVVDDNGQSVFNEQVGQGQIIVIPQGFAVSKTAGETGF 389

Query:   297 AWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPP 354
              W S  T  N     L+G     +++   V++A++ V  +  K+ +  +    +   P
Sbjct:   390 EWISFKTNDNAYINTLSGQTSYLRAVPVDVIKASYGVNEEEAKRIKFSQQETMLSMTP 447

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS;IDA

GO:0010431 "seed maturation" evidence=IDA

TAIR|locus:2121308 CRU3 "AT4G28520" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
 Identities = 42/148 (28%), Positives = 71/148 (47%)

Query:   193 EEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIV 252
             + A  DV   + GRV  +N+  LP++  V   A    L G AM  P ++ + A ++ Y  
Sbjct:   350 DPARADVYKPSLGRVTSVNSYTLPILEYVRLSATRGVLQGNAMVLPKYNMN-ANEILYCT 408

Query:   253 RGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHL 312
              G GR Q+V  +G+ VL+  V+ G L ++P+ +     +  +   W S  T  N + + L
Sbjct:   409 GGQGRIQVVNDNGQNVLDQQVQKGQLVVIPQGFAYVVQSHGNKFEWISFKTNENAMISTL 468

Query:   313 AGSIGTWKSLSPSVLEAAFNV-PSDVEK 339
             AG     ++L   V+   F + P +  K
Sbjct:   469 AGRTSLLRALPLEVISNGFQISPEEARK 496

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;TAS

GO:0042735 "protein body" evidence=TAS

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS;IDA

GO:0010431 "seed maturation" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0048825 "cotyledon development" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2167654 CRA1 "CRUCIFERINA" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.1e-15, Sum P(4) = 1.1e-15
 Identities = 36/136 (26%), Positives = 59/136 (43%)

Query:   205 GRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPD 264
             G +  LN+ +LP++  +   A    +   AM  P ++ + A  + Y+  G  + QIV  +
Sbjct:   311 GYISTLNSYDLPILRFIRLSALRGSIRQNAMVLPQWNAN-ANAILYVTDGEAQIQIVNDN 369

Query:   265 GKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSP 324
             G RV +  V  G L  VP+ + V K A  +   W    T  N     LAG     + L  
Sbjct:   370 GNRVFDGQVSQGQLIAVPQGFSVVKRATSNRFQWVEFKTNANAQINTLAGRTSVLRGLPL 429

Query:   325 SVLEAAFNV-PSDVEK 339
              V+   F + P +  +
Sbjct:   430 EVITNGFQISPEEARR 445

GO:0005634 "nucleus" evidence=ISM

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS;IDA

GO:0010431 "seed maturation" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0071215 "cellular response to abscisic acid stimulus" evidence=IDA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2056568 AT2G28490 [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
 Identities = 49/160 (30%), Positives = 74/160 (46%)

Query:   200 DIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQ 259
             D K G  + L      PL    G G  LV L   AM +P  +  +A +   ++ GSG  Q
Sbjct:   341 DNKYGWSIALDYDDYKPLKHS-GIGVYLVNLTAGAMMAPHMN-PTATEYGIVLAGSGEIQ 398

Query:   260 IVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTP----NPIFTHLAGS 315
             +V P+G   + T V  G++F +PR++   +IA   G   F   TT      P F  L GS
Sbjct:   399 VVFPNGTSAMNTRVSVGDVFWIPRYFAFCQIASRTGPFEFVGFTTSAHKNRPQF--LVGS 456

Query:   316 IGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP 355
                 ++L+ + L  AF V  +  ++F   +  EA+  P P
Sbjct:   457 NSLLRTLNLTSLSIAFGVDEETMRRFIEAQ-REAVILPTP 495

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2094404 PAP85 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
 Identities = 45/149 (30%), Positives = 74/149 (49%)

Query:    30 PMLRQG--NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKG 87
             P L +G  N   + + +E   F +PH+ D+  V  VLQG GV   V  +K ++   I KG
Sbjct:    93 PALFRGIENYRFSLVEMEPTTFFVPHHLDADAVFIVLQGKGVIEFVT-DKTKESFHITKG 151

Query:    88 DGIALPFGVVTWWYNKEDTELVVLFLGD-TSKGHKAGEFTNFFLTGAN---GIFTGFSTE 143
             D + +P GV  +  N   T  V L L   T   +  G + ++F   +      F GF+ E
Sbjct:   152 DVVRIPSGVTNFITNTNQT--VPLRLAQITVPVNNPGNYKDYFPAASQFQQSYFNGFTKE 209

Query:   144 FVSRAWDLDENTVKTLV--GKQTGKGIVK 170
              +S ++++ E  +  LV   K+ G+GI++
Sbjct:   210 VLSTSFNVPEELLGRLVTRSKEIGQGIIR 238

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0045735 "nutrient reservoir activity" evidence=IEA;ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009845 "seed germination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00026049001 SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (356 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
PLN00212	493	PLN00212, PLN00212, glutelin; Provisional	1e-40
smart00835	146	smart00835, Cupin_1, Cupin	2e-31
smart00835	146	smart00835, Cupin_1, Cupin	4e-19
pfam00190	139	pfam00190, Cupin_1, Cupin	6e-19
pfam00190	139	pfam00190, Cupin_1, Cupin	5e-13

>gnl|CDD|215106 PLN00212, PLN00212, glutelin; Provisional

 Score =  148 bits (376), Expect = 1e-40
 Identities = 94/396 (23%), Positives = 168/396 (42%), Gaps = 83/396 (20%)

Query: 41  KLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP------------------------- 75
           +  +E  G  LP Y ++  + Y++QG G  G+  P                         
Sbjct: 84  RRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFR 143

Query: 76  EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGE--FTNFFLTGA 133
           ++ +K+   ++GD +ALP GV  W+YN  D  +V L++ D +      E     F L G 
Sbjct: 144 DEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGN 203

Query: 134 N-----------------GIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IVKLDANA 175
           N                  IF+GFSTE +S A  ++    K L  +   +G I+++    
Sbjct: 204 NNRQQQVYGRSIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVKNGL 263

Query: 176 KLPEP-----KKEHRDGMAFNCEEAP-------------LD---------VDIKN----- 203
           +L +P     +++ +       ++               LD         ++I+N     
Sbjct: 264 QLLQPTLTQQQEQAQQQQQRLYQQVQYQQSQQTSGRWNGLDENFCTIKVRLNIENPSRAD 323

Query: 204 -----GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRA 258
                 GR+  LN++  P++  +   A  V L   A+ SP F   +A  V YI +G  R 
Sbjct: 324 TYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSP-FWNVNAHSVVYITQGRARV 382

Query: 259 QIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGT 318
           Q+V  +GK V    ++ G L I+P+ Y V K A+ +G  + +  T  N + +H+AG    
Sbjct: 383 QVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREGCQYIAFKTNANAMVSHIAGKNSI 442

Query: 319 WKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPP 354
           +++L   V+  A+ +  +  ++ ++ R +E   F P
Sbjct: 443 FRALPVDVIANAYRISREEARRLKNNRGDELGAFTP 478

Length = 493

>gnl|CDD|214845 smart00835, Cupin_1, Cupin

 Score =  115 bits (291), Expect = 2e-31
 Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 8/149 (5%)

Query: 11  KQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGV 69
           +  +   GG      P   P L    I AA++ LE  G   PHY   +  + YV++G G 
Sbjct: 4   RPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGR 63

Query: 70  AGIVLPEKEEKVVA-IKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNF 128
            G+V P   +   A +++GD   +P G   +  N  D  L  +         +      F
Sbjct: 64  VGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNTNDPNRR------F 117

Query: 129 FLTGANGIFTGFSTEFVSRAWDLDENTVK 157
           FL G N +  G   E ++ A+ +    V+
Sbjct: 118 FLAGRNSVLRGLPPEVLAAAFGVSAEEVR 146

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 146

>gnl|CDD|214845 smart00835, Cupin_1, Cupin

 Score = 82.3 bits (204), Expect = 4e-19
 Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 2/135 (1%)

Query: 203 NGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG 262
            GGR+   +  N P +  +G  A  V L+   M  P +   +  ++ Y+VRG GR  +V 
Sbjct: 10  EGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRAT-ELLYVVRGEGRVGVVD 68

Query: 263 PDGKRVLETTVKAGNLFIVPRFYVVSKIADPD-GLAWFSIITTPNPIFTHLAGSIGTWKS 321
           P+G +V +  ++ G++F+VP+ +   ++   D  L + +  T        LAG     + 
Sbjct: 69  PNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNTNDPNRRFFLAGRNSVLRG 128

Query: 322 LSPSVLEAAFNVPSD 336
           L P VL AAF V ++
Sbjct: 129 LPPEVLAAAFGVSAE 143

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 146

>gnl|CDD|215780 pfam00190, Cupin_1, Cupin

 Score = 81.9 bits (203), Expect = 6e-19
 Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 7/130 (5%)

Query: 10  AKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLAL-EKNGFALPHY-CDSARVAYVLQGS 67
              V+   GG      PN LP L      A +  L E  G  LPHY  ++  + YVLQG 
Sbjct: 6   PSPVFNSEGGRLETANPNNLPGLLGLAGSAVRRDLIEPGGLLLPHYHPNATEILYVLQGR 65

Query: 68  GVAGIVLPEKEEKVVA--IKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGH---KA 122
           G  G V+P    +V    +++GD   +P G   W YN  D  L ++     +  +   + 
Sbjct: 66  GRVGFVVPGCGFRVFHQKLREGDVFVVPAGFAHWQYNSGDPGLELVAFDTNNPANQLPRE 125

Query: 123 GEFTNFFLTG 132
                FFL G
Sbjct: 126 VLARAFFLAG 135

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 139

>gnl|CDD|215780 pfam00190, Cupin_1, Cupin

 Score = 65.0 bits (159), Expect = 5e-13
 Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 18/138 (13%)

Query: 203 NGGRVVLLNTKNLPLVGEVGCGADLVRLD---GKAMCSPGFSCDSALQVTYIVRGSGRAQ 259
            GGR+   N  NLP  G +G     VR D      +  P +  ++  ++ Y+++G GR  
Sbjct: 13  EGGRLETANPNNLP--GLLGLAGSAVRRDLIEPGGLLLPHYHPNAT-EILYVLQGRGRVG 69

Query: 260 IVGPD-GKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGT 318
            V P  G RV    ++ G++F+VP  +   +    D         T NP       +   
Sbjct: 70  FVVPGCGFRVFHQKLREGDVFVVPAGFAHWQYNSGDPGLELVAFDTNNP------ANQ-- 121

Query: 319 WKSLSPSVLEAAFNVPSD 336
              L   VL  AF +  +
Sbjct: 122 ---LPREVLARAFFLAGN 136

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. Length = 139

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
PLN00212	493	glutelin; Provisional	100.0
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	100.0
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	99.94
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	99.92
PLN00212	493	glutelin; Provisional	99.91
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.9
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.9
smart00835	146	Cupin_1 Cupin. This family represents the conserve	99.88
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	99.8
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	99.66
PRK11171	266	hypothetical protein; Provisional	99.65
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	99.65
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.32
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.31
PRK04190	191	glucose-6-phosphate isomerase; Provisional	99.3
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	99.27
PRK13290	125	ectC L-ectoine synthase; Reviewed	99.23
COG3837	161	Uncharacterized conserved protein, contains double	99.19
COG1917	131	Uncharacterized conserved protein, contains double	99.19
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	99.08
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	99.03
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	99.02
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.0
PRK04190	191	glucose-6-phosphate isomerase; Provisional	98.99
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	98.96
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.96
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	98.95
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	98.95
PRK11171	266	hypothetical protein; Provisional	98.83
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	98.81
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	98.78
PRK13290	125	ectC L-ectoine synthase; Reviewed	98.76
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	98.65
COG1917	131	Uncharacterized conserved protein, contains double	98.65
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	98.48
COG3837	161	Uncharacterized conserved protein, contains double	98.46
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.46
COG4297	163	Uncharacterized protein containing double-stranded	98.43
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	98.37
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	98.28
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	98.27
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	98.26
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	98.22
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	98.21
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	98.18
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	98.18
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	98.15
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	98.11
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	98.1
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	98.1
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	98.09
COG1791	181	Uncharacterized conserved protein, contains double	98.08
COG3257	264	GlxB Uncharacterized protein, possibly involved in	98.08
COG4297	163	Uncharacterized protein containing double-stranded	97.96
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	97.94
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	97.88
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	97.84
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	97.83
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	97.81
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	97.8
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	97.77
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.69
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	97.66
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	97.66
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	97.65
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	97.59
PRK13501	290	transcriptional activator RhaR; Provisional	97.56
PRK13500	312	transcriptional activator RhaR; Provisional	97.56
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	97.55
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	97.55
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	97.54
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	97.51
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	97.49
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.44
PRK13502	282	transcriptional activator RhaR; Provisional	97.43
COG1791	181	Uncharacterized conserved protein, contains double	97.35
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.34
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	97.29
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	97.28
KOG2107	179	consensus Uncharacterized conserved protein, conta	97.2
PRK13503	278	transcriptional activator RhaS; Provisional	97.19
COG3450	116	Predicted enzyme of the cupin superfamily [General	97.14
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	96.98
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	96.96
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	96.81
PRK13500	312	transcriptional activator RhaR; Provisional	96.79
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	96.77
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	96.75
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	96.72
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	96.68
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	96.68
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	96.64
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	96.63
PRK13501	290	transcriptional activator RhaR; Provisional	96.63
PRK15131	389	mannose-6-phosphate isomerase; Provisional	96.59
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	96.5
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	96.42
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	96.38
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	96.38
PRK13502	282	transcriptional activator RhaR; Provisional	96.33
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	96.28
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	96.27
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	96.23
KOG2107	179	consensus Uncharacterized conserved protein, conta	96.17
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	96.17
COG3450	116	Predicted enzyme of the cupin superfamily [General	96.15
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	96.12
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	95.99
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	95.88
COG3257	264	GlxB Uncharacterized protein, possibly involved in	95.82
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	95.77
PRK13503	278	transcriptional activator RhaS; Provisional	95.73
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	95.46
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	95.32
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	94.95
PLN02288	394	mannose-6-phosphate isomerase	94.75
PF12852	186	Cupin_6: Cupin	94.66
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	94.62
PF06172	139	Cupin_5: Cupin superfamily (DUF985); InterPro: IPR	94.55
KOG3706	629	consensus Uncharacterized conserved protein [Funct	94.4
PF13759	101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	94.21
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	94.19
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	93.97
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	93.7
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	93.39
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	93.19
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	93.09
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	93.03
PF12852	186	Cupin_6: Cupin	92.84
KOG3995	279	consensus 3-hydroxyanthranilate oxygenase HAAO [Am	92.4
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	92.3
PRK15131	389	mannose-6-phosphate isomerase; Provisional	91.91
TIGR02466	201	conserved hypothetical protein. This family consis	91.87
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	91.75
COG2850	383	Uncharacterized conserved protein [Function unknow	91.6
PRK12335	287	tellurite resistance protein TehB; Provisional	91.41
PLN02658	435	homogentisate 1,2-dioxygenase	91.06
COG3542	162	Uncharacterized conserved protein [Function unknow	91.0
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	90.73
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	90.71
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	90.45
COG3508	427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	90.44
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	90.19
KOG3706	629	consensus Uncharacterized conserved protein [Funct	90.16
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	90.1
PRK09391	230	fixK transcriptional regulator FixK; Provisional	89.87
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	89.59
PLN02288	394	mannose-6-phosphate isomerase	89.58
COG2850	383	Uncharacterized conserved protein [Function unknow	89.25
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	88.67
PF13464	77	DUF4115: Domain of unknown function (DUF4115)	88.59
PF13759	101	2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB	88.58
PF07847	200	DUF1637: Protein of unknown function (DUF1637); In	88.44
PRK10579	94	hypothetical protein; Provisional	88.39
COG1741	276	Pirin-related protein [General function prediction	88.37
PF07385	225	DUF1498: Protein of unknown function (DUF1498); In	87.44
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	87.41
PF06172	139	Cupin_5: Cupin superfamily (DUF985); InterPro: IPR	86.87
PF11142	63	DUF2917: Protein of unknown function (DUF2917); In	86.68
PLN02658	435	homogentisate 1,2-dioxygenase	86.26
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	85.24
COG3718	270	IolB Uncharacterized enzyme involved in inositol m	84.4
PRK09391	230	fixK transcriptional regulator FixK; Provisional	83.73
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	83.61
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	83.43
COG3806	216	ChrR Transcriptional activator [Transcription]	82.94
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	82.79
TIGR02466	201	conserved hypothetical protein. This family consis	82.21
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	81.99
PF14525	172	AraC_binding_2: AraC-binding-like domain	81.96
PRK12335	287	tellurite resistance protein TehB; Provisional	80.92
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	80.81
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	80.78
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	80.66
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	80.54

>PLN00212 glutelin; Provisional

Probab=100.00  E-value=7.4e-74  Score=567.04  Aligned_cols=349  Identities=26%  Similarity=0.500  Sum_probs=317.3

Q ss_pred             cCCCccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCc-----
Q 018395            4 DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKE-----   78 (356)
Q Consensus         4 dl~~~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~-----   78 (356)
                      .|++.+|+.++++++|.++.|+.. .+.|+|.++++.+++|+|+++.+||||++++++||++|+|+++++.|+|.     
T Consensus        48 ~l~a~ep~~ri~se~G~~E~~~~~-~~q~~caGv~~~R~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~  126 (493)
T PLN00212         48 RLQAFEPLRKVRSEAGVTEYFDEK-NEQFQCTGVFVIRRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQ  126 (493)
T ss_pred             ccccCCCchhhcccCceeeecCCC-ChhhcccceEEEEEEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhh
Confidence            478999999999999999999965 59999999999999999999999999999999999999999999987652     


Q ss_pred             --------------------eEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCC---CCceeEEeeccc--
Q 018395           79 --------------------EKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHK---AGEFTNFFLTGA--  133 (356)
Q Consensus        79 --------------------~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~---pg~~~~f~lag~--  133 (356)
                                          ++++.|++|||++||+|++||++|+|++++++++++++++..|   |+ +..|||||+  
T Consensus       127 ~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~-~r~F~LaG~~~  205 (493)
T PLN00212        127 QFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPR-QREFLLAGNNN  205 (493)
T ss_pred             hcccccccccccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCC-cceeeccCCCc
Confidence                                2447999999999999999999999999999999999887655   53 579999996  


Q ss_pred             ---------------ccccccCcHHHHHhhccCCHHHHHHhhcccC-CceEEEcCCCCcCCCCCcc--------------
Q 018395          134 ---------------NGIFTGFSTEFVSRAWDLDENTVKTLVGKQT-GKGIVKLDANAKLPEPKKE--------------  183 (356)
Q Consensus       134 ---------------~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~-~~~iv~~~~~~~~~~p~~~--------------  183 (356)
                                     .++|++|++++|++|||++.++++||+.+|+ ++.||+++++++..+|..+              
T Consensus       206 ~~~~~~~~~~~~~~~~nifsGF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv~~~l~~~~P~~~~~~e~~~~~~~~~~  285 (493)
T PLN00212        206 RQQQVYGRSIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVKNGLQLLQPTLTQQQEQAQQQQQRLY  285 (493)
T ss_pred             cccccccccccccccCchhhcCCHHHHHHHHCCCHHHHHHHhccccCCccEEEECCCcccCCCchhhhhHHHHhhhhccc
Confidence                           3599999999999999999999999998764 5899999987765555210              


Q ss_pred             --------c--------------CCCceeeccC-CCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccc
Q 018395          184 --------H--------------RDGMAFNCEE-APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGF  240 (356)
Q Consensus       184 --------~--------------~~~~~~~l~~-~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~  240 (356)
                              .              +..+++||.. .+++++++.+|+++++++.+||+|++|+||+++++|.+|||++|||
T Consensus       286 ~~~~~~~~~~~~~~~ngleEt~c~~rlr~Ni~~p~~ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHw  365 (493)
T PLN00212        286 QQVQYQQSQQTSGRWNGLDENFCTIKVRLNIENPSRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFW  365 (493)
T ss_pred             ccchhhhccccccCCCCccccccccccccccCCccccCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCee
Confidence                    0              0124677763 5577889999999999999999999999999999999999999999


Q ss_pred             cccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCCCceecccccccccc
Q 018395          241 SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWK  320 (356)
Q Consensus       241 h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~  320 (356)
                      |++ |++|+||++|+++++||+++|+++|+++|++||||||||||+|.+.|++++++|++|.+++++...++||++|+|+
T Consensus       366 n~n-A~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~egfe~v~F~tna~~~~s~laG~~Sv~~  444 (493)
T PLN00212        366 NVN-AHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREGCQYIAFKTNANAMVSHIAGKNSIFR  444 (493)
T ss_pred             cCC-CCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCceEEEEeecCCCccccccccHHHHHH
Confidence            999 9999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             CCCHHHHHHHcCCCHHHHHHHHhcCCCeEEecCCC
Q 018395          321 SLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP  355 (356)
Q Consensus       321 ~~p~~vl~~af~~~~~~~~~l~~~~~~~~~~~~p~  355 (356)
                      +||.+||++||+++.+++++|+.++.+++++++|+
T Consensus       445 alp~eVla~Af~is~eea~~lk~n~~~e~~~~~p~  479 (493)
T PLN00212        445 ALPVDVIANAYRISREEARRLKNNRGDELGAFTPR  479 (493)
T ss_pred             hCCHHHHHHHcCCCHHHHHHHHhcccCceeecCCC
Confidence            99999999999999999999999988888999984

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=100.00  E-value=1.9e-51  Score=399.22  Aligned_cols=309  Identities=18%  Similarity=0.246  Sum_probs=264.7

Q ss_pred             CCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCc
Q 018395           17 NGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGV   96 (356)
Q Consensus        17 ~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~   96 (356)
                      ++|+++..+..++|.++.  +++.+++|.||++++||||.+.|++||++|++++++++.+++.....|++||+++||+|.
T Consensus        49 ~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~  126 (367)
T TIGR03404        49 NGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGI  126 (367)
T ss_pred             cCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCC
Confidence            789999999999999975  789999999999999999977899999999999999987776665689999999999999


Q ss_pred             EEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCC--
Q 018395           97 VTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDAN--  174 (356)
Q Consensus        97 ~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~--  174 (356)
                      +|++.|.+ ++++++++++.+.++.+.   .+.+   .++|+.+|.+||+++|+++.+++++|++.+.  +|+.....  
T Consensus       127 ~H~~~n~~-~~~~~l~vf~~~~f~~~~---~~~~---~~~l~~~p~~Vla~~f~l~~~~~~~l~~~~~--~~~~~~~~~~  197 (367)
T TIGR03404       127 PHSLQGLD-EGCEFLLVFDDGNFSEDG---TFLV---TDWLAHTPKDVLAKNFGVPESAFDNLPLKEL--YIFPGTVPGP  197 (367)
T ss_pred             eEEEEECC-CCeEEEEEeCCcccCCcc---eeeH---HHHHHhCCHHHHHHHhCCCHHHHHhccccCc--eEEecCCCCc
Confidence            99999985 458899888876555543   3343   3678889999999999999999999997765  67754211  


Q ss_pred             Cc---CCCCCcccCCCceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEE
Q 018395          175 AK---LPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYI  251 (356)
Q Consensus       175 ~~---~~~p~~~~~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v  251 (356)
                      ..   ...|.....+.++|++...+|.  ...||+++.+++.+||++++  +|++.++|.||++++||||++ ++||.||
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~gG~~~~~~~~~~p~~~~--~s~~~~~l~PG~~~~~H~H~~-~~E~~yv  272 (367)
T TIGR03404       198 LDQEAVTGPAGEVPGPFTYHLSEQKPK--QVPGGTVRIADSTNFPVSKT--IAAAIVTVEPGAMRELHWHPN-ADEWQYF  272 (367)
T ss_pred             cccccCcCCCCCCCccEEEEhhhCCce--ecCCceEEEEChhhccCcce--EEEEEEEECCCCccCCeeCcC-CCeEEEE
Confidence            11   1112223345678899999984  47899999999999999985  899999999999999999999 9999999


Q ss_pred             EeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHH
Q 018395          252 VRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAA  330 (356)
Q Consensus       252 ~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~a  330 (356)
                      ++|++++++++++|+. ....|++||+++||+|+.|++ |.|+++++|++++++..+....|   ++||+.+|++||+++
T Consensus       273 l~G~~~~~v~d~~g~~-~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l---~~~l~~~p~~vl~~~  348 (367)
T TIGR03404       273 IQGQARMTVFAAGGNA-RTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSL---NQWLALTPPQLVAAH  348 (367)
T ss_pred             EEEEEEEEEEecCCcE-EEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEH---HHHHhhCCHHHHHHH
Confidence            9999999999988753 346899999999999999999 56899999999999988877766   599999999999999


Q ss_pred             cCCCHHHHHHHHhcC
Q 018395          331 FNVPSDVEKQFRSKR  345 (356)
Q Consensus       331 f~~~~~~~~~l~~~~  345 (356)
                      |+++.+++++|++.+
T Consensus       349 ~~~~~~~~~~l~~~~  363 (367)
T TIGR03404       349 LNLDDEVIDSLKKEK  363 (367)
T ss_pred             hCcCHHHHHhccccC
Confidence            999999999998753

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=99.94  E-value=4.7e-26  Score=194.51  Aligned_cols=134  Identities=29%  Similarity=0.470  Sum_probs=108.3

Q ss_pred             eeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEE-EEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCc--
Q 018395          190 FNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADL-VRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK--  266 (356)
Q Consensus       190 ~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~-v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~--  266 (356)
                      ||+.+.++.+ ++++|+++.+++.+||+|..+..++.. +.|+||||++|||| + |+||+||++|+++++++++++.  
T Consensus         1 fn~~~~~~~~-~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~-a~~i~~V~~G~~~~~~v~~~~~~~   77 (144)
T PF00190_consen    1 FNLREPRPRV-SNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-N-ADEIVYVIEGRGRVGVVGPGGPQE   77 (144)
T ss_dssp             EETCSSSEEE-EETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-S-SEEEEEEEESEEEEEEEETTCSSS
T ss_pred             CCCCCCCCcc-cCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-e-eeEEeeeeccceEEEEEecCCccc
Confidence            6888888865 789999999999999987777655555 55699999999999 8 9999999999999999999862  


Q ss_pred             --eEEEEE--ecCCcEEEEcCCcEEEEeeC-CC-CeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHH
Q 018395          267 --RVLETT--VKAGNLFIVPRFYVVSKIAD-PD-GLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVE  338 (356)
Q Consensus       267 --~~~~~~--l~~Gdv~vvP~g~~h~~~~~-~~-~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~  338 (356)
                        +.+..+  |++|||++||+|++||+.|. ++ ...+++|.++..+..            +|++|++++|+++.+.+
T Consensus        78 ~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~  143 (144)
T PF00190_consen   78 EFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV  143 (144)
T ss_dssp             EEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred             cceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence              455566  99999999999999999774 34 455666655444222            89999999999999764

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=99.92  E-value=9.5e-25  Score=186.42  Aligned_cols=135  Identities=24%  Similarity=0.478  Sum_probs=111.4

Q ss_pred             CCCccccceeeCCCeEEEEeCCCCCCCc-ccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCC-----c
Q 018395            5 LTPKLAKQVYGGNGGSYHAWCPNELPML-RQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEK-----E   78 (356)
Q Consensus         5 l~~~~~~~~~~~~~G~i~~~~~~~~p~l-~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~-----~   78 (356)
                      |++.++++++++++|+++.|+..++|.+ ...++++....|+||+++.||||++.|++||++|+++++++.+++     +
T Consensus         1 fn~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~   80 (144)
T PF00190_consen    1 FNLREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFR   80 (144)
T ss_dssp             EETCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEE
T ss_pred             CCCCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccce
Confidence            4678889999999999999999999844 457788888889999999999999999999999999999999876     2


Q ss_pred             eEEEE--EcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHH
Q 018395           79 EKVVA--IKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTV  156 (356)
Q Consensus        79 ~~~~~--l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~  156 (356)
                      ....+  +++||++++|+|++||+.|.+|++...+.+++++   +|..              .+|+++++++|+++.++.
T Consensus        81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~---~~~~--------------~l~~~v~~~~F~~~~~~~  143 (144)
T PF00190_consen   81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTN---NPPN--------------QLPPEVLAKAFFLSGEEV  143 (144)
T ss_dssp             EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEES---STTG--------------ESSHHHHHHHEESSHHHH
T ss_pred             eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECC---CCcc--------------cCCcHHHHHhcCCCcCcC
Confidence            33344  9999999999999999999996656666666654   2211              199999999999999864

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>PLN00212 glutelin; Provisional

Probab=99.91  E-value=1.4e-23  Score=208.79  Aligned_cols=162  Identities=14%  Similarity=0.250  Sum_probs=138.5

Q ss_pred             CcccCCCc--cccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCC
Q 018395            1 MEIDLTPK--LAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEK   77 (356)
Q Consensus         1 ~~~dl~~~--~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~   77 (356)
                      |++..+..  ...++|.+.+|++..+++.++|.|+..++++.++.|.||+|..|||| +|.+++||++|+++++||++++
T Consensus       310 ~rlr~Ni~~p~~ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g  389 (493)
T PLN00212        310 IKVRLNIENPSRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNG  389 (493)
T ss_pred             cccccccCCccccCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCC
Confidence            34444434  33478999999999999999999999999999999999999999999 9999999999999999999774


Q ss_pred             -ceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHH
Q 018395           78 -EEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTV  156 (356)
Q Consensus        78 -~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~  156 (356)
                       +....+|++||+++||+|++|..... ++.+.++++..+.   ++   ...+|||..|+|+++|.+||++||+++.+++
T Consensus       390 ~~vf~~~L~~GdvfVVPqg~~v~~~A~-~egfe~v~F~tna---~~---~~s~laG~~Sv~~alp~eVla~Af~is~eea  462 (493)
T PLN00212        390 KTVFNGVLRPGQLLIIPQHYAVLKKAE-REGCQYIAFKTNA---NA---MVSHIAGKNSIFRALPVDVIANAYRISREEA  462 (493)
T ss_pred             CEEEEEEEcCCCEEEECCCCeEEEeec-CCceEEEEeecCC---Cc---cccccccHHHHHHhCCHHHHHHHcCCCHHHH
Confidence             45567999999999999999988765 5569999866543   22   3456899999999999999999999999999


Q ss_pred             HHhhcccCCceEE
Q 018395          157 KTLVGKQTGKGIV  169 (356)
Q Consensus       157 ~~l~~~q~~~~iv  169 (356)
                      ++|+.++.+..++
T Consensus       463 ~~lk~n~~~e~~~  475 (493)
T PLN00212        463 RRLKNNRGDELGA  475 (493)
T ss_pred             HHHHhcccCceee
Confidence            9999987554443

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.90  E-value=2.8e-23  Score=202.21  Aligned_cols=139  Identities=19%  Similarity=0.275  Sum_probs=124.4

Q ss_pred             eeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEe
Q 018395           14 YGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIAL   92 (356)
Q Consensus        14 ~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~i   92 (356)
                      +...+|+++.+++.++|.++  +++++.++|+||+++++||| +++||+||++|++++++++++++.++.+|++||+++|
T Consensus       224 ~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~i  301 (367)
T TIGR03404       224 KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYV  301 (367)
T ss_pred             eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEE
Confidence            55789999999999999776  58999999999999999999 8999999999999999988877767789999999999


Q ss_pred             CCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhccc
Q 018395           93 PFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQ  163 (356)
Q Consensus        93 P~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q  163 (356)
                      |+|..|++.|.|+++++++|++++.   .   +.++.|   .+||+.+|.+||+++|+++.+.+++|++.+
T Consensus       302 P~g~~H~i~N~G~e~l~fL~if~s~---~---~~~i~l---~~~l~~~p~~vl~~~~~~~~~~~~~l~~~~  363 (367)
T TIGR03404       302 PRNMGHYVENTGDETLVFLEVFKAD---R---FADVSL---NQWLALTPPQLVAAHLNLDDEVIDSLKKEK  363 (367)
T ss_pred             CCCCeEEEEECCCCCEEEEEEECCC---C---CceeEH---HHHHhhCCHHHHHHHhCcCHHHHHhccccC
Confidence            9999999999999999999998753   2   234444   489999999999999999999999998664

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>smart00835 Cupin_1 Cupin

Probab=99.90  E-value=2.3e-22  Score=172.09  Aligned_cols=141  Identities=26%  Similarity=0.516  Sum_probs=124.3

Q ss_pred             ccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCC-CceEEEEEcCC
Q 018395           10 AKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPE-KEEKVVAIKKG   87 (356)
Q Consensus        10 ~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~-~~~~~~~l~~G   87 (356)
                      +.+.+++++|+++.|+..++|.+++.++.+.+++++||+...+||| +++|++||++|++.+.+.+++ +++..+.+++|
T Consensus         3 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~G   82 (146)
T smart00835        3 PRPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREG   82 (146)
T ss_pred             ccccccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCC
Confidence            4457899999999999989999999999999999999999999999 799999999999999987653 24456899999


Q ss_pred             CEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHH
Q 018395           88 DGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTV  156 (356)
Q Consensus        88 Dv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~  156 (356)
                      |+++||+|..|++.|.++++++++++.. .   +|.  ..+|++|..++|++|++++++++|+++.+++
T Consensus        83 D~~~ip~g~~H~~~n~~~~~~~~l~~~~-~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (146)
T smart00835       83 DVFVVPQGHPHFQVNSGDENLEFVAFNT-N---DPN--RRFFLAGRNSVLRGLPPEVLAAAFGVSAEEV  145 (146)
T ss_pred             CEEEECCCCEEEEEcCCCCCEEEEEEec-C---CCC--ceeEeecccchhhcCCHHHHHHHhCcChHHc
Confidence            9999999999999999999999997543 2   343  4678888889999999999999999999865

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>smart00835 Cupin_1 Cupin

Probab=99.88  E-value=1.7e-21  Score=166.79  Aligned_cols=138  Identities=28%  Similarity=0.491  Sum_probs=124.1

Q ss_pred             ccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395          200 DIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF  279 (356)
Q Consensus       200 ~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~  279 (356)
                      +++++|+++.+++.++|.++..++.+.++.+.||++..||||++ +.|+.||++|++.+.+.+..+++.....+++||++
T Consensus         7 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~-~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~   85 (146)
T smart00835        7 FSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPR-ATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVF   85 (146)
T ss_pred             ccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCC-CCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEE
Confidence            47899999999999999999999999999999999999999998 89999999999999999987666677899999999


Q ss_pred             EEcCCcEEEEee-CCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHH
Q 018395          280 IVPRFYVVSKIA-DPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVE  338 (356)
Q Consensus       280 vvP~g~~h~~~~-~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~  338 (356)
                      +||+|..|+..+ ++++++++++.+++.+...+++|.++++.+++++|++++|+++++++
T Consensus        86 ~ip~g~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (146)
T smart00835       86 VVPQGHPHFQVNSGDENLEFVAFNTNDPNRRFFLAGRNSVLRGLPPEVLAAAFGVSAEEV  145 (146)
T ss_pred             EECCCCEEEEEcCCCCCEEEEEEecCCCCceeEeecccchhhcCCHHHHHHHhCcChHHc
Confidence            999999999954 67899999876555445556888889999999999999999999865

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=99.80  E-value=6e-19  Score=155.65  Aligned_cols=190  Identities=21%  Similarity=0.249  Sum_probs=153.5

Q ss_pred             cHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcC-CCC-----CcccCCCceeeccCCCCCcccCCCcEEEEeCCCC
Q 018395          141 STEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKL-PEP-----KKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKN  214 (356)
Q Consensus       141 ~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~-~~p-----~~~~~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~  214 (356)
                      +...+.+.|+++.++...+..+|.  +|.+.+..... ..+     -...+..+.|.+...+|..   ++|.++......
T Consensus         2 ~~~~~~~~~~vd~~~~~~~p~~~~--~i~~~~~~~~l~~d~~~~~~~~~~~~~~~yel~~~~~~~---~~g~L~~~~t~~   76 (209)
T COG2140           2 PKLFEPKNFGVDVRTGKLLPLKQV--YIKRGSDPGGLYADEDAYSMLRKKEDDFVYELLESEPGE---RGGDLRLDVTRI   76 (209)
T ss_pred             CceeccccccchhhhhhcCCccce--eEEeccCCcccccCHHHHHHhcCCCCceEEEeecccccc---cCCeEEEEeecc
Confidence            456778899999988887766664  56665533221 111     1123457899999888865   299999999999


Q ss_pred             CCCccccCceeEEEEecCCCeecccccccCCee--EEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-ee
Q 018395          215 LPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQ--VTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IA  291 (356)
Q Consensus       215 ~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~e--i~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~  291 (356)
                      +|..     +.+.+.++||+|++.||||+ |+|  |.||++|++++.+.+++|+ +....+++||+.+||.++.|+. |.
T Consensus        77 ~pGs-----~g~e~~~t~G~~~~~H~Hp~-ade~E~y~vi~G~g~m~v~~~~G~-~~v~~~~~Gd~iyVPp~~gH~t~N~  149 (209)
T COG2140          77 FPGS-----AGAEVFKTPGAMRELHYHPN-ADEPEIYYVLKGEGRMLVQKPEGE-ARVIAVRAGDVIYVPPGYGHYTINT  149 (209)
T ss_pred             CCCc-----cceEEEecCCcccccccCCC-CCcccEEEEEeccEEEEEEcCCCc-EEEEEecCCcEEEeCCCcceEeecC
Confidence            9976     46788999999999999999 999  9999999999999999985 4567999999999999999999 55


Q ss_pred             CCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHHHHHHhcC
Q 018395          292 DPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKR  345 (356)
Q Consensus       292 ~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~~~l~~~~  345 (356)
                      |++++.|+.++..+.+....+   ..+++.++..+++..|+.+....|..+.+.
T Consensus       150 Gd~pLvf~~v~~~~~~~~y~~---~~~~~~~~~~~~~~~~~~~~~~~D~p~~~~  200 (209)
T COG2140         150 GDEPLVFLNVYPADAGQDYDL---IAWLGGMPPVLVENGLNKNPKYVDVPRIKF  200 (209)
T ss_pred             CCCCEEEEEEEeCCCCceeee---eehhccCCceeeccccccCcccccCccccc
Confidence            889999999997777666555   588899999999999999988777775443

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=99.66  E-value=8e-14  Score=130.24  Aligned_cols=194  Identities=13%  Similarity=0.151  Sum_probs=130.8

Q ss_pred             CceEEEEEEecCCCcc-cCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           35 GNIGAAKLALEKNGFA-LPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~-~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      ..+.+..++++||+-. .+|+| ..+|++||++|++++.+   ++  ..+.|++||.+++|+|..|.+.|.+++++++++
T Consensus        56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~---~g--~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~  130 (260)
T TIGR03214        56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA---EG--ETHELREGGYAYLPPGSKWTLANAQAEDARFFL  130 (260)
T ss_pred             CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE---CC--EEEEECCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence            5788899999998765 45556 45899999999999986   23  458999999999999999999999999999998


Q ss_pred             EeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceeec
Q 018395          113 LGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNC  192 (356)
Q Consensus       113 i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~l  192 (356)
                      +...        ++  -+.|       +                     ..+ ..++. +....-..|..          
T Consensus       131 v~k~--------y~--~~~g-------~---------------------~~~-~~vvg-~~~dv~~~~~~----------  160 (260)
T TIGR03214       131 YKKR--------YQ--PVEG-------L---------------------HAP-ELVVG-NEKDIEPEPYE----------  160 (260)
T ss_pred             EEee--------eE--EcCC-------C---------------------CCC-Ceeec-CHHHCCccccC----------
Confidence            7542        11  0111       0                     000 01111 00000000000          


Q ss_pred             cCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeec-ccccccCCeeEEEEEeceEEEEEEccCCceEEEE
Q 018395          193 EEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCS-PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLET  271 (356)
Q Consensus       193 ~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~-PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~  271 (356)
                              -..+.+++.+-+.++..    ++.+..+.|.||+-.. .|.|..  .+..||++|+|.+.+   +|+.   .
T Consensus       161 --------g~~~~~~~~llp~~~~~----~~~~~~~~~~PG~~~~~~~~H~~--eh~~yiL~G~G~~~~---~g~~---~  220 (260)
T TIGR03214       161 --------GMDDVILTTLLPKELAF----DMNVHILSFEPGASHPYIETHVM--EHGLYVLEGKGVYNL---DNNW---V  220 (260)
T ss_pred             --------CCCcEEEEEeCchhcCC----CcEEEEEEECCCcccCCcccccc--eeEEEEEeceEEEEE---CCEE---E
Confidence                    01112222222222211    4667889999999997 466765  467799999998855   3322   5


Q ss_pred             EecCCcEEEEcCCcEEEEee-CCCCeEEEEEEc
Q 018395          272 TVKAGNLFIVPRFYVVSKIA-DPDGLAWFSIIT  303 (356)
Q Consensus       272 ~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~~~~  303 (356)
                      .|++||++++|+|.+|+..| |++++++|--.+
T Consensus       221 ~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~ykd  253 (260)
T TIGR03214       221 PVEAGDYIWMGAYCPQACYAGGRGEFRYLLYKD  253 (260)
T ss_pred             EecCCCEEEECCCCCEEEEecCCCcEEEEEEcc
Confidence            89999999999999999955 789999998653

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PRK11171 hypothetical protein; Provisional

Probab=99.65  E-value=2.9e-14  Score=133.67  Aligned_cols=197  Identities=14%  Similarity=0.180  Sum_probs=135.3

Q ss_pred             cCceEEEEEEecCCCcccCeee--CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYC--DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      ..++.+.+++++||+....|+|  ..+|++||++|++++.+   ++  .++.|++||.+++|++.+|.+.|.++++++++
T Consensus        58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~---~g--~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l  132 (266)
T PRK11171         58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL---EG--KTHALSEGGYAYLPPGSDWTLRNAGAEDARFH  132 (266)
T ss_pred             CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE---CC--EEEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence            4578889999999998776765  56899999999999986   23  45899999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceee
Q 018395          112 FLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFN  191 (356)
Q Consensus       112 ~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~  191 (356)
                      ++...-  . |       +.|       ..                     .+ ..++.-..                 +
T Consensus       133 ~v~~~y--~-~-------~~~-------~~---------------------~p-~~~~~~~~-----------------d  156 (266)
T PRK11171        133 WIRKRY--E-P-------VEG-------HE---------------------AP-EAFVGNES-----------------D  156 (266)
T ss_pred             EEEcCC--e-E-------cCC-------CC---------------------CC-CeEecchh-----------------c
Confidence            875421  1 1       001       00                     00 11221000                 0


Q ss_pred             ccCCCCCcccCCCcEEE--EeCCCCCCCccccCceeEEEEecCCCeeccc-ccccCCeeEEEEEeceEEEEEEccCCceE
Q 018395          192 CEEAPLDVDIKNGGRVV--LLNTKNLPLVGEVGCGADLVRLDGKAMCSPG-FSCDSALQVTYIVRGSGRAQIVGPDGKRV  268 (356)
Q Consensus       192 l~~~~~~~~~~~gG~~~--~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH-~h~~~A~ei~~v~~G~~~~~iv~~~g~~~  268 (356)
                      +...+.  ....|..++  .+++.+.    ..++.+..+.|.||+-...| +|.  ..|.+||++|++++.+=   ++  
T Consensus       157 ~~~~~~--~g~~g~~~~~~~~~p~~~----~~~~~~~~~~l~PG~~~~~~~~~~--~ee~i~Vl~G~~~~~~~---~~--  223 (266)
T PRK11171        157 IEPIPM--PGTDGVWATTRLVDPEDL----RFDMHVNIVTFEPGASIPFVETHV--MEHGLYVLEGKGVYRLN---ND--  223 (266)
T ss_pred             cccccc--CCCCCeEEEEEeeCchhc----CCCcEEEEEEECCCCEEccCcCCC--ceEEEEEEeCEEEEEEC---CE--
Confidence            000000  001122221  1111111    11356888999999999875 554  67999999999999752   22  


Q ss_pred             EEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEEEEcCC
Q 018395          269 LETTVKAGNLFIVPRFYVVSK-IADPDGLAWFSIITTP  305 (356)
Q Consensus       269 ~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~~~  305 (356)
                       ...|++||++.+|.+-+|+. |.|+++++|+...+-+
T Consensus       224 -~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k~~n  260 (266)
T PRK11171        224 -WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYKDVN  260 (266)
T ss_pred             -EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEcccc
Confidence             35799999999999999999 4578999999886433

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=99.65  E-value=1.2e-15  Score=134.89  Aligned_cols=128  Identities=23%  Similarity=0.333  Sum_probs=108.0

Q ss_pred             CeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCE--EEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCC
Q 018395           18 GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSAR--VAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF   94 (356)
Q Consensus        18 ~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e--~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~   94 (356)
                      +|.++......+|..     ..+...++||++++.||| +++|  |+||++|++++.+-.++++..+.++++||++|||+
T Consensus        66 ~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp  140 (209)
T COG2140          66 GGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPP  140 (209)
T ss_pred             CCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCC
Confidence            788887666555544     556889999999999999 9988  99999999999999999888899999999999999


Q ss_pred             CcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHh
Q 018395           95 GVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTL  159 (356)
Q Consensus        95 G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l  159 (356)
                      ++.|+..|+|+++|+|+.++..+.   .   +.+.+   ..++++++..+++..|+.+....+..
T Consensus       141 ~~gH~t~N~Gd~pLvf~~v~~~~~---~---~~y~~---~~~~~~~~~~~~~~~~~~~~~~~D~p  196 (209)
T COG2140         141 GYGHYTINTGDEPLVFLNVYPADA---G---QDYDL---IAWLGGMPPVLVENGLNKNPKYVDVP  196 (209)
T ss_pred             CcceEeecCCCCCEEEEEEEeCCC---C---ceeee---eehhccCCceeeccccccCcccccCc
Confidence            999999999999999999887542   1   34444   47888999999999998877655544

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.32  E-value=1.1e-11  Score=92.19  Aligned_cols=69  Identities=29%  Similarity=0.379  Sum_probs=61.5

Q ss_pred             EEEecCCCcccCeeeCCC-EEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           41 KLALEKNGFALPHYCDSA-RVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        41 ~~~l~Pg~~~~pH~h~a~-e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      +++++||+..++|+|... |++||++|++.+.+   ++  ....+++||.+++|+|..|.+.|.++++++++.|+
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~--~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~   71 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DG--ERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY   71 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TT--EEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE---cc--EEeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence            689999999999999555 99999999999984   23  35899999999999999999999999999999874

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.31  E-value=1.9e-11  Score=102.13  Aligned_cols=79  Identities=22%  Similarity=0.281  Sum_probs=71.0

Q ss_pred             cCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      +..+++..+.++||.-..+|+| ..+|++||++|+|.+.+   ++  +...|++||+++||+|..|++.|.|..+|++++
T Consensus        33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~---~~--~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~lie  107 (127)
T COG0662          33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI---GG--EEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIE  107 (127)
T ss_pred             CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE---CC--EEEEecCCCEEEECCCCcEEEEcCCCcceEEEE
Confidence            3678999999999999888888 89999999999999987   23  458999999999999999999999999999999


Q ss_pred             EeeCC
Q 018395          113 LGDTS  117 (356)
Q Consensus       113 i~~~~  117 (356)
                      +..+.
T Consensus       108 i~~p~  112 (127)
T COG0662         108 VQSPP  112 (127)
T ss_pred             EecCC
Confidence            87654

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=99.30  E-value=3.7e-11  Score=106.75  Aligned_cols=87  Identities=22%  Similarity=0.269  Sum_probs=74.4

Q ss_pred             CCcccCceEEEEEEecCCCc------ccCeee-CC--CEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEE
Q 018395           30 PMLRQGNIGAAKLALEKNGF------ALPHYC-DS--ARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWW  100 (356)
Q Consensus        30 p~l~~~~~~~~~~~l~Pg~~------~~pH~h-~a--~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~  100 (356)
                      +.....++.++..+|.||..      ..+||| ..  .|++||++|++.+.+-+.++......+++||+++||+|+.|.+
T Consensus        61 ~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~  140 (191)
T PRK04190         61 PEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRS  140 (191)
T ss_pred             CCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEe
Confidence            44566789999999999996      567999 44  4999999999999886555444568999999999999999999


Q ss_pred             EecCCCcEEEEEEeeC
Q 018395          101 YNKEDTELVVLFLGDT  116 (356)
Q Consensus       101 ~N~g~e~l~~l~i~~~  116 (356)
                      .|+|+++++++++...
T Consensus       141 iN~G~epl~fl~v~p~  156 (191)
T PRK04190        141 VNTGDEPLVFLACYPA  156 (191)
T ss_pred             EECCCCCEEEEEEEcC
Confidence            9999999999998753

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=99.27  E-value=1.2e-10  Score=111.76  Aligned_cols=232  Identities=16%  Similarity=0.166  Sum_probs=135.3

Q ss_pred             ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEee
Q 018395           36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      .+.+..-.|.||....+|-|.+..+.||++|+|...+|+  +  +...+++||+|++|++..|...|.+++++.++...|
T Consensus        80 tl~a~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V~--g--~~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~lD  155 (335)
T TIGR02272        80 SLYAGLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAVD--G--ERTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGLD  155 (335)
T ss_pred             hHHhhhEEeCCCCCCCccccccceEEEEEEcCceEEEEC--C--EEEeeeCCCEEEeCCCeeEecccCCCCcEEEEecCC
Confidence            566788899999999999999999999999999655553  3  348999999999999999999999999877765543


Q ss_pred             CCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCC-ceeeccC
Q 018395          116 TSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDG-MAFNCEE  194 (356)
Q Consensus       116 ~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~-~~~~l~~  194 (356)
                      -     |- ++  +| | .+++...+.+.-..+-.-+ +...+ .    .+.+..+....      .....+ +.|....
T Consensus       156 ~-----Pl-~~--~l-~-~~f~e~~~~~~~~~~~~~~-~~~~~-~----g~~l~P~~~~~------~~~~sP~~~ypw~~  213 (335)
T TIGR02272       156 I-----PL-VQ--LF-D-CSFAEGYPEDQQPVTRPEG-DSLAR-Y----GHNMLPVRHKR------SDRSSPIFNYPYER  213 (335)
T ss_pred             H-----HH-HH--hh-C-cceeccccccccccccCCc-chhhh-c----ccCcccccccc------CCCCCCceecCcHH
Confidence            2     21 00  11 1 0122111111000000000 00000 0    00011111000      000011 1121111


Q ss_pred             CC---------CCcccCCCc-EEEEeCCCCCC-CccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEcc
Q 018395          195 AP---------LDVDIKNGG-RVVLLNTKNLP-LVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGP  263 (356)
Q Consensus       195 ~~---------~~~~~~~gG-~~~~~~~~~~p-~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~  263 (356)
                      ..         .+. ....| .+..+|+.+=+ .+.++  +...-.|.+|....+|=|+  ++.|.||++|+|++.|-+ 
T Consensus       214 ~~~aL~~~~~~~~~-~~~~g~~l~y~NP~TG~~~~pti--~~~~q~L~~G~~t~~~r~T--~s~Vf~VieG~G~s~ig~-  287 (335)
T TIGR02272       214 SREALDDLTRTGEW-DPWHGLKLRYVNPATGGYPMPTI--GAFIQLLPKGFRTATYRST--DATVFCVVEGRGQVRIGD-  287 (335)
T ss_pred             HHHHHHHHHhccCC-CCCceEEEEEeCCCCCCCcchhH--HHHHhccCCCCCCCCcccc--ccEEEEEEeCeEEEEECC-
Confidence            00         000 12222 35566654444 45554  4555788999999999997  468999999999999832 


Q ss_pred             CCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCCC
Q 018395          264 DGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNP  307 (356)
Q Consensus       264 ~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~p  307 (356)
                         +.  .+.++||+|+||....|...+. +++.++.+  ++.|
T Consensus       288 ---~~--~~W~~gD~f~vPsW~~~~h~a~-~da~Lf~~--~D~P  323 (335)
T TIGR02272       288 ---AV--FRFSPKDVFVVPSWHPVRFEAS-DDAVLFSF--SDRP  323 (335)
T ss_pred             ---EE--EEecCCCEEEECCCCcEecccC-CCeEEEEe--cCHH
Confidence               32  4799999999999888766554 44544444  3444

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=99.23  E-value=9.4e-11  Score=97.45  Aligned_cols=77  Identities=13%  Similarity=0.135  Sum_probs=65.8

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      .++++.+++|+||+....|+|...|++||++|++++..++ ++  +++.|++||++++|++.+|++.|.  +++++++++
T Consensus        33 ~~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~-~g--~~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v~  107 (125)
T PRK13290         33 MGFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLA-TG--EVHPIRPGTMYALDKHDRHYLRAG--EDMRLVCVF  107 (125)
T ss_pred             CCEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcC-CC--EEEEeCCCeEEEECCCCcEEEEcC--CCEEEEEEE
Confidence            5788899999999988889985469999999999997321 12  448999999999999999999997  789999987


Q ss_pred             eC
Q 018395          115 DT  116 (356)
Q Consensus       115 ~~  116 (356)
                      .+
T Consensus       108 tP  109 (125)
T PRK13290        108 NP  109 (125)
T ss_pred             CC
Confidence            64

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.19  E-value=9.7e-11  Score=98.62  Aligned_cols=78  Identities=23%  Similarity=0.382  Sum_probs=69.0

Q ss_pred             CceEEEEEEecCCCcc-cCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCC--cEEEEEecCCCcEEE
Q 018395           35 GNIGAAKLALEKNGFA-LPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG--VVTWWYNKEDTELVV  110 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~-~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G--~~H~~~N~g~e~l~~  110 (356)
                      ..+.+....++||+.. ..||| ..+|++|||+|++++.+   ++.  .+.|++||++-||+|  ..|.++|.++..+++
T Consensus        40 ~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~---d~~--e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~y  114 (161)
T COG3837          40 KRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE---DGG--ETRLRPGDSAGFPAGVGNAHHLINRSDVILRY  114 (161)
T ss_pred             hhcccceEEeCCCCccccccccccCceEEEEEcCceEEEE---CCe--eEEecCCceeeccCCCcceeEEeecCCceEEE
Confidence            4677889999999976 79999 99999999999999865   332  379999999999999  999999999999999


Q ss_pred             EEEeeCC
Q 018395          111 LFLGDTS  117 (356)
Q Consensus       111 l~i~~~~  117 (356)
                      |++.+..
T Consensus       115 L~vG~r~  121 (161)
T COG3837         115 LEVGTRE  121 (161)
T ss_pred             EEecccc
Confidence            9998754

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.19  E-value=1.6e-10  Score=96.84  Aligned_cols=81  Identities=25%  Similarity=0.304  Sum_probs=70.2

Q ss_pred             CcccCceEEEEEEecCCCcccCeeeC-CCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEE
Q 018395           31 MLRQGNIGAAKLALEKNGFALPHYCD-SARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELV  109 (356)
Q Consensus        31 ~l~~~~~~~~~~~l~Pg~~~~pH~h~-a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~  109 (356)
                      ...+.++.+..++++||+....|.|. .++.+||++|++++++-   +  ..+.+++||++++|+|..||+.|.+++...
T Consensus        37 ~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g--~~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~  111 (131)
T COG1917          37 RNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---G--EKKELKAGDVIIIPPGVVHGLKAVEDEPMV  111 (131)
T ss_pred             CCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec---C--CceEecCCCEEEECCCCeeeeccCCCCcee
Confidence            33467888999999999999999996 99999999999999972   2  348999999999999999999999888767


Q ss_pred             EEEEeeC
Q 018395          110 VLFLGDT  116 (356)
Q Consensus       110 ~l~i~~~  116 (356)
                      +|++...
T Consensus       112 ~l~v~~~  118 (131)
T COG1917         112 LLLVFPL  118 (131)
T ss_pred             EEEEeee
Confidence            7777653

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=99.08  E-value=4.3e-09  Score=90.25  Aligned_cols=89  Identities=16%  Similarity=0.214  Sum_probs=78.1

Q ss_pred             CCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCC
Q 018395           16 GNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF   94 (356)
Q Consensus        16 ~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~   94 (356)
                      ..+|+++.++..       .++.+.++++.||.....|+| ...|..+|++|++.+.+   ++  ....+.+||+++||+
T Consensus        49 rpWG~~~~l~~~-------~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~--~~~~~~~g~sv~Ip~  116 (151)
T PF01050_consen   49 RPWGSYEVLDEG-------EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DD--EEFTLKEGDSVYIPR  116 (151)
T ss_pred             cCCcEEEEEEcc-------CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CC--EEEEEcCCCEEEECC
Confidence            467888877642       368899999999999999999 89999999999999987   33  448999999999999


Q ss_pred             CcEEEEEecCCCcEEEEEEeeC
Q 018395           95 GVVTWWYNKEDTELVVLFLGDT  116 (356)
Q Consensus        95 G~~H~~~N~g~e~l~~l~i~~~  116 (356)
                      |..|.+.|.|+++|+++-+-..
T Consensus       117 g~~H~i~n~g~~~L~~IEVq~G  138 (151)
T PF01050_consen  117 GAKHRIENPGKTPLEIIEVQTG  138 (151)
T ss_pred             CCEEEEECCCCcCcEEEEEecC
Confidence            9999999999999999998653

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.03  E-value=5.3e-09  Score=96.70  Aligned_cols=236  Identities=20%  Similarity=0.220  Sum_probs=148.1

Q ss_pred             CCcccCc-----eEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecC
Q 018395           30 PMLRQGN-----IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKE  104 (356)
Q Consensus        30 p~l~~~~-----~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g  104 (356)
                      |.|++..     +=++.--|-||-..+.|-|+...+-||++|+|..++|+.   ++ ..+++||.+..|++..|..-|.|
T Consensus        80 P~l~g~ssiT~TLyAglQlilPGEvApsHrHsqsAlRFvveG~Ga~T~VdG---er-~~M~~GDfilTP~w~wHdHgn~g  155 (351)
T COG3435          80 PGLRGRSSITPTLYAGLQLILPGEVAPSHRHNQSALRFVVEGKGAYTVVDG---ER-TPMEAGDFILTPAWTWHDHGNEG  155 (351)
T ss_pred             CCCCCcccccHHHHhhhheecCcccCCcccccccceEEEEeccceeEeecC---ce-eeccCCCEEEccCceeccCCCCC
Confidence            7777653     123556789999999999999999999999999988853   34 69999999999999999999999


Q ss_pred             CCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCc-----CC-
Q 018395          105 DTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAK-----LP-  178 (356)
Q Consensus       105 ~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~-----~~-  178 (356)
                      .+++.++--.|-     |-  -. .+ | ..++...|++..........             .+-|.-.+.+     .. 
T Consensus       156 ~eP~iWlDgLDi-----pl--v~-~l-~-~gFfe~~~e~~q~v~~~~~d-------------~~ar~~~~~rP~~~r~~~  212 (351)
T COG3435         156 TEPCIWLDGLDI-----PL--VN-SL-G-AGFFEEHPEEQQPVTRPEGD-------------SLARYGPGMRPLRHRWGK  212 (351)
T ss_pred             CCceEEEcccch-----HH--HH-hh-c-ccccccCchhcCcccCCCCC-------------chhhcCCCccccccCCCC
Confidence            999888755442     20  00 11 1 13344444443332221111             1112111111     00 


Q ss_pred             --CCC-----cccCCCc-eeeccCCCCCcccCCCcEEEEeCCCCC-CCccccCceeEEEEecCCCeecccccccCCeeEE
Q 018395          179 --EPK-----KEHRDGM-AFNCEEAPLDVDIKNGGRVVLLNTKNL-PLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVT  249 (356)
Q Consensus       179 --~p~-----~~~~~~~-~~~l~~~~~~~~~~~gG~~~~~~~~~~-p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~  249 (356)
                        .|-     ...++-+ .+... .+||  ..+|-.++.+|+.+= -++-+  |++..-.|.||-.-.+|-|++ + .+.
T Consensus       213 ~~SPlf~Y~w~~t~eAL~~la~~-e~~d--p~dG~~~ryvNP~TGg~~mpt--I~a~mqlL~~Gf~~~~~r~t~-s-~iy  285 (351)
T COG3435         213 PYSPLFNYAWDRTREALERLARL-EEPD--PFDGYKMRYVNPVTGGYAMPT--IGAFMQLLPPGFHGKAHRHTD-S-TIY  285 (351)
T ss_pred             CCCcccccccccHHHHHHHHHhc-cCCC--CCCcceEEEecCCCCCCcCch--HHHHHHhcCCcccCCceeccC-C-EEE
Confidence              110     0000000 00000 1222  134555666654421 11223  445555678888889999997 4 588


Q ss_pred             EEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCCC
Q 018395          250 YIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNP  307 (356)
Q Consensus       250 ~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~p  307 (356)
                      -|.+|++++.|-+   ++   .+.++||+||||.=+.|-..++++++.+++|.  +.|
T Consensus       286 ~V~eGsg~~~Ig~---~r---f~~~~~D~fvVPsW~~~~~~~gs~da~LFsfs--D~P  335 (351)
T COG3435         286 HVVEGSGYTIIGG---ER---FDWSAGDIFVVPSWAWHEHVNGSEDAVLFSFS--DRP  335 (351)
T ss_pred             EEEecceeEEECC---EE---eeccCCCEEEccCcceeecccCCcceEEEecC--CcH
Confidence            8999999988754   23   56889999999999999888888889888875  554

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=99.02  E-value=3.7e-09  Score=98.91  Aligned_cols=75  Identities=21%  Similarity=0.208  Sum_probs=65.4

Q ss_pred             ceEEEEEEecCCCcccCee-eCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           36 NIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~-h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      ++.+.+++++||+....|. |..++.+|||+|+|.+.+   ++  +.+++++||++++|++.+||++|.|++++++|.--
T Consensus       178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~---~g--~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~yk  252 (260)
T TIGR03214       178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL---DN--NWVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLYK  252 (260)
T ss_pred             CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE---CC--EEEEecCCCEEEECCCCCEEEEecCCCcEEEEEEc
Confidence            6788889999999998655 488899999999999976   33  34899999999999999999999999999999744


Q ss_pred             e
Q 018395          115 D  115 (356)
Q Consensus       115 ~  115 (356)
                      |
T Consensus       253 d  253 (260)
T TIGR03214       253 D  253 (260)
T ss_pred             c
Confidence            3

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.00  E-value=3.1e-09  Score=78.80  Aligned_cols=69  Identities=17%  Similarity=0.256  Sum_probs=59.3

Q ss_pred             EEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEe-eCCCCeEEEEEE
Q 018395          227 LVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI-ADPDGLAWFSII  302 (356)
Q Consensus       227 ~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~-~~~~~~~~~~~~  302 (356)
                      +++|.||+-..+|+|+. ..|+.||++|++.+. ++  ++   ...|++||.+++|++-.|... .+++++.++.++
T Consensus         2 ~~~~~pG~~~~~h~H~~-~~e~~~vl~G~~~~~-~~--~~---~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~   71 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPG-EDEFFYVLSGEGTLT-VD--GE---RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY   71 (71)
T ss_dssp             EEEEETTEEEEEEEESS-EEEEEEEEESEEEEE-ET--TE---EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred             EEEECCCCCCCCEECCC-CCEEEEEEECCEEEE-Ec--cE---EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence            57899999999999987 779999999999999 54  22   357999999999999999994 577889998764

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=98.99  E-value=6.4e-09  Score=92.46  Aligned_cols=86  Identities=16%  Similarity=0.262  Sum_probs=71.4

Q ss_pred             ccccCceeEEEEecCCCe------ecccccccCCe--eEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395          218 VGEVGCGADLVRLDGKAM------CSPGFSCDSAL--QVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK  289 (356)
Q Consensus       218 l~~l~~s~~~v~l~~g~~------~~PH~h~~~A~--ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~  289 (356)
                      ++.-++.+..+.|.||.+      ..+|||++ ..  |+.||++|++.+.+-+.+|.. ....+++||+++||+|+.|..
T Consensus        63 ~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~-~~~~EiyyvlsG~g~~~l~~~~G~~-~~~~v~pGd~v~IPpg~~H~~  140 (191)
T PRK04190         63 ETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAK-ADRAEIYYGLKGKGLMLLQDPEGEA-RWIEMEPGTVVYVPPYWAHRS  140 (191)
T ss_pred             CcCCceEEEEEEECCCcEecccccCCCeEcCC-CCCCEEEEEEeCEEEEEEecCCCcE-EEEEECCCCEEEECCCCcEEe
Confidence            344468899999999996      56799986 54  999999999999998877642 346899999999999999988


Q ss_pred             -eeCCCCeEEEEEEcCC
Q 018395          290 -IADPDGLAWFSIITTP  305 (356)
Q Consensus       290 -~~~~~~~~~~~~~~~~  305 (356)
                       |.|+++++++++....
T Consensus       141 iN~G~epl~fl~v~p~~  157 (191)
T PRK04190        141 VNTGDEPLVFLACYPAD  157 (191)
T ss_pred             EECCCCCEEEEEEEcCC
Confidence             5588899999987444

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=98.96  E-value=4.2e-09  Score=106.23  Aligned_cols=78  Identities=12%  Similarity=0.151  Sum_probs=69.2

Q ss_pred             cCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      +.++.+.+++++||+....|+| ..+|..||++|++++.+   ++  +++.|++||.++||+|.+|.+.|.|++++++|+
T Consensus       382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i---dg--~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~  456 (478)
T PRK15460        382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI---DG--DIKLLGENESIYIPLGATHCLENPGKIPLDLIE  456 (478)
T ss_pred             CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE---CC--EEEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence            3468889999999998877877 77899999999999987   33  458999999999999999999999999999999


Q ss_pred             EeeC
Q 018395          113 LGDT  116 (356)
Q Consensus       113 i~~~  116 (356)
                      +...
T Consensus       457 V~~g  460 (478)
T PRK15460        457 VRSG  460 (478)
T ss_pred             EEcC
Confidence            8653

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.96  E-value=7.5e-09  Score=104.71  Aligned_cols=89  Identities=12%  Similarity=0.168  Sum_probs=75.1

Q ss_pred             CCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCC
Q 018395           16 GNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF   94 (356)
Q Consensus        16 ~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~   94 (356)
                      ..+|+......       +.++.+..++++||+...+|+| ..+|.+||++|++++.+   ++  +++.|++||++++|+
T Consensus       362 ~pWG~~~~~~~-------~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~---dg--~~~~l~~GDsi~ip~  429 (468)
T TIGR01479       362 RPWGKYDSIDQ-------GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI---GD--ETLLLTENESTYIPL  429 (468)
T ss_pred             CCCCceEEEec-------CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE---CC--EEEEecCCCEEEECC
Confidence            45666665432       3478899999999998888888 77888899999999987   33  448999999999999


Q ss_pred             CcEEEEEecCCCcEEEEEEeeC
Q 018395           95 GVVTWWYNKEDTELVVLFLGDT  116 (356)
Q Consensus        95 G~~H~~~N~g~e~l~~l~i~~~  116 (356)
                      |.+|.+.|.|+++++++++...
T Consensus       430 ~~~H~~~N~g~~~~~~i~v~~~  451 (468)
T TIGR01479       430 GVIHRLENPGKIPLELIEVQSG  451 (468)
T ss_pred             CCcEEEEcCCCCCEEEEEEEcC
Confidence            9999999999999999998753

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=98.95  E-value=6.9e-09  Score=92.19  Aligned_cols=76  Identities=12%  Similarity=0.060  Sum_probs=64.8

Q ss_pred             CceEEEEEEecCCCccc-CeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           35 GNIGAAKLALEKNGFAL-PHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~-pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      ..+.+...+++||+... .|+|...|++||++|++.+.+   ++  ..+.|++||.+++|++.+|.+.|.++++++++++
T Consensus       105 ~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~---~~--~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~  179 (185)
T PRK09943        105 RTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTI---NG--QDYHLVAGQSYAINTGIPHSFSNTSAGICRIISA  179 (185)
T ss_pred             CeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEE---CC--EEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEE
Confidence            45666777899999764 556688999999999999987   33  4589999999999999999999999999999987


Q ss_pred             ee
Q 018395          114 GD  115 (356)
Q Consensus       114 ~~  115 (356)
                      ..
T Consensus       180 ~~  181 (185)
T PRK09943        180 HT  181 (185)
T ss_pred             eC
Confidence            64

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.95  E-value=5.1e-09  Score=83.91  Aligned_cols=79  Identities=19%  Similarity=0.159  Sum_probs=67.9

Q ss_pred             CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      .++-+..++|.||+....|.| .-+..+||++|++.+-+-+  .-+...++++||.||||+|++|.-.|.+++++..+.+
T Consensus        44 s~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~--rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa  121 (142)
T COG4101          44 SGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGN--RLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA  121 (142)
T ss_pred             ceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeecc--ceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence            577788999999999999999 8888999999999997732  1245679999999999999999999999999887765


Q ss_pred             ee
Q 018395          114 GD  115 (356)
Q Consensus       114 ~~  115 (356)
                      -.
T Consensus       122 Rs  123 (142)
T COG4101         122 RS  123 (142)
T ss_pred             cc
Confidence            43

>PRK11171 hypothetical protein; Provisional

Probab=98.83  E-value=4.9e-08  Score=91.67  Aligned_cols=75  Identities=19%  Similarity=0.152  Sum_probs=66.4

Q ss_pred             ceEEEEEEecCCCcccCe-eeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           36 NIGAAKLALEKNGFALPH-YCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH-~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      ++.+..++|+||+....| +|..+|.+||++|++++.+   ++  +.+.|++||++++|++.+|++.|.|+++++++..-
T Consensus       183 ~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~---~~--~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~k  257 (266)
T PRK11171        183 DMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL---NN--DWVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLYK  257 (266)
T ss_pred             CcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE---CC--EEEEeCCCCEEEECCCCCEEEECCCCCcEEEEEEc
Confidence            468899999999999885 5689999999999999986   33  44899999999999999999999999999999865


Q ss_pred             e
Q 018395          115 D  115 (356)
Q Consensus       115 ~  115 (356)
                      +
T Consensus       258 ~  258 (266)
T PRK11171        258 D  258 (266)
T ss_pred             c
Confidence            4

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=98.81  E-value=7.2e-08  Score=80.53  Aligned_cols=83  Identities=16%  Similarity=0.158  Sum_probs=56.2

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCC----CceEEEEEcCCCEEEeCCCcEEEEEecC-CCcEE
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPE----KEEKVVAIKKGDGIALPFGVVTWWYNKE-DTELV  109 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~----~~~~~~~l~~GDv~~iP~G~~H~~~N~g-~e~l~  109 (356)
                      ..+.+-+-++.||+..++|-|..+|+++|++|+|++.+....    |+.+.+.+-+++.|+||.+.+|.++|++ .+++.
T Consensus        42 kevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq  121 (167)
T PF02041_consen   42 KEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ  121 (167)
T ss_dssp             SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred             eeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence            457888999999999999999999999999999999987653    4455689999999999999999999998 48999


Q ss_pred             EEEEeeCC
Q 018395          110 VLFLGDTS  117 (356)
Q Consensus       110 ~l~i~~~~  117 (356)
                      ++.+....
T Consensus       122 vlViiSrp  129 (167)
T PF02041_consen  122 VLVIISRP  129 (167)
T ss_dssp             EEEEEESS
T ss_pred             EEEEecCC
Confidence            99887643

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=98.78  E-value=7.4e-08  Score=84.71  Aligned_cols=87  Identities=23%  Similarity=0.206  Sum_probs=57.7

Q ss_pred             CCcccCceEEEEEEecCCCc------ccCeee-C------CCEEEEEEeCeEEEEEEcCCC----ceEEEEEcCCCEEEe
Q 018395           30 PMLRQGNIGAAKLALEKNGF------ALPHYC-D------SARVAYVLQGSGVAGIVLPEK----EEKVVAIKKGDGIAL   92 (356)
Q Consensus        30 p~l~~~~~~~~~~~l~Pg~~------~~pH~h-~------a~e~~yVl~G~~~~~vv~~~~----~~~~~~l~~GDv~~i   92 (356)
                      ..++..++......|.||.+      ..=||| .      ..|+++|++|+|.+-+-..++    .....++++||+++|
T Consensus        43 ~~~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~I  122 (182)
T PF06560_consen   43 EWLQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYI  122 (182)
T ss_dssp             -------EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE
T ss_pred             ccceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEE
Confidence            44666789999999999875      356999 7      799999999999999888776    455689999999999


Q ss_pred             CCCcEEEEEecCCCcEEEEEEeeC
Q 018395           93 PFGVVTWWYNKEDTELVVLFLGDT  116 (356)
Q Consensus        93 P~G~~H~~~N~g~e~l~~l~i~~~  116 (356)
                      |+++.|...|+|+++|++.++...
T Consensus       123 Pp~yaH~tIN~g~~~L~~~~~~~~  146 (182)
T PF06560_consen  123 PPGYAHRTINTGDEPLVFAAWVPR  146 (182)
T ss_dssp             -TT-EEEEEE-SSS-EEEEEEEET
T ss_pred             CCCceEEEEECCCCcEEEEEEEec
Confidence            999999999999999999988763

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=98.76  E-value=8e-08  Score=79.91  Aligned_cols=81  Identities=11%  Similarity=0.241  Sum_probs=66.1

Q ss_pred             cCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEE
Q 018395          221 VGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS  300 (356)
Q Consensus       221 l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~  300 (356)
                      .++++.++.|+||+-...|+|..  .|+.||++|++++..++. | +  ...|++||.+++|++.+|.+.|. +++++++
T Consensus        33 ~~~~~~~~~l~pG~~~~~h~h~~--~E~~yVL~G~~~~~~i~~-g-~--~~~L~aGD~i~~~~~~~H~~~N~-e~~~~l~  105 (125)
T PRK13290         33 MGFSFHETTIYAGTETHLHYKNH--LEAVYCIEGEGEVEDLAT-G-E--VHPIRPGTMYALDKHDRHYLRAG-EDMRLVC  105 (125)
T ss_pred             CCEEEEEEEECCCCcccceeCCC--EEEEEEEeCEEEEEEcCC-C-E--EEEeCCCeEEEECCCCcEEEEcC-CCEEEEE
Confidence            35788999999999888899865  499999999999984421 1 2  35799999999999999999776 8999999


Q ss_pred             EEcCCCCc
Q 018395          301 IITTPNPI  308 (356)
Q Consensus       301 ~~~~~~p~  308 (356)
                      +.+..-++
T Consensus       106 v~tP~~~~  113 (125)
T PRK13290        106 VFNPPLTG  113 (125)
T ss_pred             EECCCCCC
Confidence            98654433

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.65  E-value=1.6e-07  Score=78.39  Aligned_cols=78  Identities=18%  Similarity=0.185  Sum_probs=68.1

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEe-eCCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI-ADPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~-~~~~~~~~~~  300 (356)
                      ..+++++.+.||+-..+|.|.+ ..|+.||++|++.+.+=+   +   ...|++||.++||+|.+|.+. .|+.++++++
T Consensus        35 ~~~~~~~~v~pg~~~~~~~H~~-~dE~~~Vl~G~g~v~~~~---~---~~~v~~gd~~~iP~g~~H~~~N~G~~~L~lie  107 (127)
T COG0662          35 RYSIARILVKPGEEISLHHHHH-RDEHWYVLEGTGKVTIGG---E---EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIE  107 (127)
T ss_pred             cEEEEEEEECCCcccCcccccC-cceEEEEEeeEEEEEECC---E---EEEecCCCEEEECCCCcEEEEcCCCcceEEEE
Confidence            5789999999999999999998 899999999999998763   2   357999999999999999994 4788999999


Q ss_pred             EEcCCC
Q 018395          301 IITTPN  306 (356)
Q Consensus       301 ~~~~~~  306 (356)
                      +.....
T Consensus       108 i~~p~~  113 (127)
T COG0662         108 VQSPPY  113 (127)
T ss_pred             EecCCc
Confidence            875554

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.65  E-value=1.9e-07  Score=78.07  Aligned_cols=79  Identities=20%  Similarity=0.274  Sum_probs=65.1

Q ss_pred             cccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeE
Q 018395          219 GEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLA  297 (356)
Q Consensus       219 ~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~  297 (356)
                      .+-.+++..+.+.||+....|.||- ..+.+||++|++++++-.   +.   ..+++||++++|+|-.|+..| +++.+.
T Consensus        39 ~~~~~~~~~v~~~~G~~~~~H~hp~-~~~~~~Vl~G~~~~~~~g---~~---~~l~~Gd~i~ip~g~~H~~~a~~~~~~~  111 (131)
T COG1917          39 EGENLSVVLVTFEPGAVIPWHTHPL-GEQTIYVLEGEGTVQLEG---EK---KELKAGDVIIIPPGVVHGLKAVEDEPMV  111 (131)
T ss_pred             CCceEEEEEEEECCCcccccccCCC-cceEEEEEecEEEEEecC---Cc---eEecCCCEEEECCCCeeeeccCCCCcee
Confidence            3446789999999999999999995 679999999999999872   22   579999999999999999955 444467


Q ss_pred             EEEEEcC
Q 018395          298 WFSIITT  304 (356)
Q Consensus       298 ~~~~~~~  304 (356)
                      ++++...
T Consensus       112 ~l~v~~~  118 (131)
T COG1917         112 LLLVFPL  118 (131)
T ss_pred             EEEEeee
Confidence            7776644

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=98.48  E-value=1.5e-06  Score=67.18  Aligned_cols=73  Identities=25%  Similarity=0.333  Sum_probs=56.7

Q ss_pred             ceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           36 NIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      -++.+.++|+||+.-.+-.. +..-++||++|...+.+     ++..+.+.+||+|+||+|-.-.+.|.++++++++++
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti-----~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~   84 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI-----HETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV   84 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE-----TTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred             CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE-----cCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence            57889999999998777666 88889999999999998     335589999999999999999999999998887753

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.46  E-value=7.2e-07  Score=75.44  Aligned_cols=82  Identities=17%  Similarity=0.160  Sum_probs=66.4

Q ss_pred             CCccccCceeEEEEecCCCee-cccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCC--cEEEEee-
Q 018395          216 PLVGEVGCGADLVRLDGKAMC-SPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRF--YVVSKIA-  291 (356)
Q Consensus       216 p~l~~l~~s~~~v~l~~g~~~-~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g--~~h~~~~-  291 (356)
                      =.|+.  +++....+.||+-. .+|||.. -.|++||++|++.+.+=+   .   .+.|++||++-||+|  ..|+.+| 
T Consensus        37 ~Gl~~--fGvn~~~v~PG~~Ss~~H~Hs~-edEfv~ILeGE~~l~~d~---~---e~~lrpGD~~gFpAG~~~aHhliN~  107 (161)
T COG3837          37 LGLKR--FGVNLEIVEPGGESSLRHWHSA-EDEFVYILEGEGTLREDG---G---ETRLRPGDSAGFPAGVGNAHHLINR  107 (161)
T ss_pred             cChhh--cccceEEeCCCCcccccccccc-CceEEEEEcCceEEEECC---e---eEEecCCceeeccCCCcceeEEeec
Confidence            34554  55888899999887 6999998 999999999999776533   1   357999999999999  8999855 


Q ss_pred             CCCCeEEEEEEcCCC
Q 018395          292 DPDGLAWFSIITTPN  306 (356)
Q Consensus       292 ~~~~~~~~~~~~~~~  306 (356)
                      ++..++++++-+...
T Consensus       108 s~~~~~yL~vG~r~~  122 (161)
T COG3837         108 SDVILRYLEVGTREP  122 (161)
T ss_pred             CCceEEEEEeccccc
Confidence            677899999965444

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=98.46  E-value=4.7e-07  Score=78.79  Aligned_cols=61  Identities=20%  Similarity=0.133  Sum_probs=52.7

Q ss_pred             ecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395           44 LEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        44 l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~  105 (356)
                      =.||.....|+|..+|++|+++|+..+.+++.+ +.++..|++||++++|+|++|..+...+
T Consensus        41 gGpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g-~~~~v~L~eGd~fllP~gvpHsP~r~~~  101 (177)
T PRK13264         41 GGPNARTDFHYDPGEEFFYQLEGDMYLKVQEDG-KRRDVPIREGEMFLLPPHVPHSPQREAG  101 (177)
T ss_pred             ccCCcccccccCCCceEEEEECCeEEEEEEcCC-ceeeEEECCCCEEEeCCCCCcCCccCCC
Confidence            378888899999999999999999999998743 3356899999999999999999987433

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=98.43  E-value=5e-07  Score=74.38  Aligned_cols=69  Identities=17%  Similarity=0.252  Sum_probs=59.3

Q ss_pred             cCCCee-cccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEc
Q 018395          231 DGKAMC-SPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIIT  303 (356)
Q Consensus       231 ~~g~~~-~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~  303 (356)
                      =.|+++ --|||++ |||++.|++|++.++|-.++|+.   -++.+||++++|+|..|.-.-++-++..++.+.
T Consensus        50 W~g~Vf~yHHYHs~-aHEVl~vlrgqA~l~iGG~~G~e---l~v~~GDvlliPAGvGH~rl~sS~DF~VvGaYp  119 (163)
T COG4297          50 WRGGVFNYHHYHSG-AHEVLGVLRGQAGLQIGGADGQE---LEVGEGDVLLIPAGVGHCRLHSSADFQVVGAYP  119 (163)
T ss_pred             ccccccccccccCC-cceEEEEecceeEEEecCCCCce---eeecCCCEEEEecCcccccccCCCCeEEEcccC
Confidence            345555 4789999 99999999999999999999866   369999999999999999877788888888763

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=98.37  E-value=1.9e-06  Score=73.88  Aligned_cols=65  Identities=18%  Similarity=0.090  Sum_probs=53.4

Q ss_pred             EEEe-cCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395           41 KLAL-EKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT  106 (356)
Q Consensus        41 ~~~l-~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e  106 (356)
                      .+.+ .||+....|.|..+|++|+++|+..+.+.+.+ +.++..|++||++++|+|++|......++
T Consensus        31 v~~vgGpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g-~~~~v~L~eGd~flvP~gvpHsP~r~~~t   96 (159)
T TIGR03037        31 VTVVGGPNARTDFHDDPGEEFFYQLKGEMYLKVTEEG-KREDVPIREGDIFLLPPHVPHSPQRPAGS   96 (159)
T ss_pred             EEEeCCCCCCcccccCCCceEEEEEcceEEEEEEcCC-cEEEEEECCCCEEEeCCCCCcccccCCCc
Confidence            3344 77777778888899999999999999987643 34568999999999999999999886544

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.28  E-value=5.5e-06  Score=66.71  Aligned_cols=84  Identities=17%  Similarity=0.175  Sum_probs=67.9

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~  300 (356)
                      +|-+-.|.+.||+-.--|.|-+ -...+||++|++++-.-+.   --+..++++||+|+||+|.+|-- |++++++..+.
T Consensus        45 ~i~~~~vTi~pgAkakaH~H~~-hEtaIYvlsG~ah~w~G~r---LE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vI  120 (142)
T COG4101          45 GICMHLVTIPPGAKAKAHLHEE-HETAIYVLSGEAHTWYGNR---LEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVI  120 (142)
T ss_pred             eeeEEEEeeCCCcccccccccc-ccEEEEEEeceeeeeeccc---eeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEE
Confidence            4667788999999999999987 6778999999998876542   13456899999999999999998 66888888887


Q ss_pred             EEcCCCCce
Q 018395          301 IITTPNPIF  309 (356)
Q Consensus       301 ~~~~~~p~~  309 (356)
                      ..+..++..
T Consensus       121 aRsDp~~~E  129 (142)
T COG4101         121 ARSDPNPQE  129 (142)
T ss_pred             EccCCCCCc
Confidence            766555544

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=98.27  E-value=6.3e-06  Score=70.75  Aligned_cols=75  Identities=16%  Similarity=0.150  Sum_probs=65.4

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~  300 (356)
                      +..+.++.+.||.-..+|.|.. -+|.-+|++|+|.+++=   + +  ...+.+||.++||+|..|.+.| |+.+++++.
T Consensus        62 ~~~vkri~V~pG~~lSlq~H~~-R~E~W~Vv~G~a~v~~~---~-~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IE  134 (151)
T PF01050_consen   62 GYKVKRITVNPGKRLSLQYHHH-RSEHWTVVSGTAEVTLD---D-E--EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIE  134 (151)
T ss_pred             CEEEEEEEEcCCCccceeeecc-cccEEEEEeCeEEEEEC---C-E--EEEEcCCCEEEECCCCEEEEECCCCcCcEEEE
Confidence            4668999999999999999998 88999999999999972   2 2  2579999999999999999955 788999999


Q ss_pred             EEc
Q 018395          301 IIT  303 (356)
Q Consensus       301 ~~~  303 (356)
                      +-.
T Consensus       135 Vq~  137 (151)
T PF01050_consen  135 VQT  137 (151)
T ss_pred             Eec
Confidence            863

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=98.26  E-value=1e-05  Score=69.83  Aligned_cols=67  Identities=22%  Similarity=0.254  Sum_probs=50.3

Q ss_pred             cccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEee
Q 018395           49 FALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        49 ~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      +...|.|..+|+-|+++|+|.+.+...++......+++||.+++|+|+.||..=+.+..++.+=+|.
T Consensus        84 f~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~  150 (157)
T PF03079_consen   84 FFEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK  150 (157)
T ss_dssp             HCS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES
T ss_pred             hheeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec
Confidence            4568999999999999999999998776654447999999999999999999765555677776665

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=98.22  E-value=1.3e-05  Score=72.56  Aligned_cols=74  Identities=16%  Similarity=0.184  Sum_probs=57.1

Q ss_pred             cCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      +..|+++.++++-..   ..|| +.+|+.||++|+.++.+   ++  +++.+++||+++||+|..|.+.+.+  ..++++
T Consensus       154 ~s~m~aGf~~~~~~s---f~wtl~~dEi~YVLEGe~~l~I---dG--~t~~l~pGDvlfIPkGs~~hf~tp~--~aRfly  223 (233)
T PRK15457        154 GSSMAAGFMQWENAF---FPWTLNYDEIDMVLEGELHVRH---EG--ETMIAKAGDVMFIPKGSSIEFGTPS--SVRFLY  223 (233)
T ss_pred             CCceeeEEEEEecCc---cceeccceEEEEEEEeEEEEEE---CC--EEEEeCCCcEEEECCCCeEEecCCC--CeeEEE
Confidence            457888889998633   3477 99999999999999987   33  4589999999999999995444443  567777


Q ss_pred             EeeCC
Q 018395          113 LGDTS  117 (356)
Q Consensus       113 i~~~~  117 (356)
                      +..++
T Consensus       224 V~~Pa  228 (233)
T PRK15457        224 VAWPA  228 (233)
T ss_pred             EEecC
Confidence            66543

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=98.21  E-value=5.5e-06  Score=84.00  Aligned_cols=76  Identities=9%  Similarity=0.022  Sum_probs=65.7

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~  300 (356)
                      ++.+..+.+.||+-..+|+|+. ..|..||++|++++.+=+   +   ...|++||.++||+|.+|.+ |.|++++++++
T Consensus       375 ~~~~~~~~i~PG~~~~~h~H~~-~~E~~~Vl~G~~~v~~dg---~---~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~  447 (468)
T TIGR01479       375 RYQVKRITVKPGEKLSLQMHHH-RAEHWIVVSGTARVTIGD---E---TLLLTENESTYIPLGVIHRLENPGKIPLELIE  447 (468)
T ss_pred             CEEEEEEEECCCCccCccccCC-CceEEEEEeeEEEEEECC---E---EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence            5788999999999888999998 889899999999998543   2   35799999999999999999 45789999999


Q ss_pred             EEcC
Q 018395          301 IITT  304 (356)
Q Consensus       301 ~~~~  304 (356)
                      +.+.
T Consensus       448 v~~~  451 (468)
T TIGR01479       448 VQSG  451 (468)
T ss_pred             EEcC
Confidence            8753

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=98.18  E-value=3.7e-05  Score=62.86  Aligned_cols=79  Identities=15%  Similarity=0.138  Sum_probs=70.0

Q ss_pred             cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      +.|+|+-.-+|.||+-...||-+--|-+||++|+|.+..... +  +++.+++|.++.+.+--.|++....  +++++|+
T Consensus        32 gmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~-G--~~~~i~pGt~YaLd~hD~H~lra~~--dm~~vCV  106 (126)
T PF06339_consen   32 GMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDT-G--EVHPIKPGTMYALDKHDRHYLRAKT--DMRLVCV  106 (126)
T ss_pred             CCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccC-C--cEEEcCCCeEEecCCCccEEEEecC--CEEEEEE
Confidence            578999999999999999999999999999999999987643 2  4599999999999999999999865  6999999


Q ss_pred             eeCC
Q 018395          114 GDTS  117 (356)
Q Consensus       114 ~~~~  117 (356)
                      |.++
T Consensus       107 FnPp  110 (126)
T PF06339_consen  107 FNPP  110 (126)
T ss_pred             cCCC
Confidence            9753

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=98.18  E-value=1.6e-05  Score=73.49  Aligned_cols=210  Identities=16%  Similarity=0.176  Sum_probs=95.3

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      .+.+..++++++|-..+||+|++++-+||++|....+    +.+.....|.+|.-+..|+|..|+....+++.+.++.+.
T Consensus        34 ~g~~~~~vkf~~g~~~pph~H~~~~~~~Vi~G~~~~~----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e~g  109 (251)
T PF14499_consen   34 DGPSGMRVKFPAGFSSPPHIHNADYRGTVISGELHNG----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIEIG  109 (251)
T ss_dssp             TS-EEEEEEE-TT-EE--BEESS-EEEEEEESEEEET----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE-S
T ss_pred             CCcceEEEEcCCCccCCCcceeeeEEEEEEEeEEEcC----CCcccceecCCCceEeccCCCceeeeccCccEEEEEEeC
Confidence            4667889999999999999999999999999986552    222223569999999999999999888777766665432


Q ss_pred             eCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCc-CCCCCcccCCCceeecc
Q 018395          115 DTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAK-LPEPKKEHRDGMAFNCE  193 (356)
Q Consensus       115 ~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~-~~~p~~~~~~~~~~~l~  193 (356)
                      ..     |  |.   +         -|.   +++|.-.+.-+     +.....|+=++..+. ...              
T Consensus       110 ~g-----p--~~---v---------~p~---~~~~~~~e~p~-----n~~~~~ivwld~~dl~W~~--------------  148 (251)
T PF14499_consen  110 EG-----P--YD---V---------KPS---EEAFDNGERPI-----NVDKDNIVWLDASDLEWIS--------------  148 (251)
T ss_dssp             ----------EE------------------------SS--TT-------GGG-EEEEECCCS--EE--------------
T ss_pred             CC-----c--cc---c---------ccc---ccccccccccc-----ccccccceEeccccCCccc--------------
Confidence            21     1  11   0         010   01221111111     111123443332211 000              


Q ss_pred             CCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEe
Q 018395          194 EAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTV  273 (356)
Q Consensus       194 ~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l  273 (356)
                       .++.  ...+-.+..+-..  |  ++-.+....++|..|---.+|+|+.  .+=.|||+|+...++-.-..    ...|
T Consensus       149 -~~~~--~~~g~~~a~Lwgd--~--~~g~~~gll~kLPagf~g~i~~h~~--~eraVvI~G~~~~~~~~~~~----~~~L  215 (251)
T PF14499_consen  149 -APPG--PPPGAQIAFLWGD--P--NTGQYTGLLLKLPAGFTGRIHTHAS--NERAVVISGELDYQSYGASN----FGTL  215 (251)
T ss_dssp             --SSS--TT-SEEEEEEEE---T--TS-EE-EEEEE-SSEE--SEEE--S---EEEEEEEEEEEETTEEEET----TEEE
T ss_pred             -cCCC--CCCcceEEEEecC--C--CCCceeeEEEEcCCCCcCceeccCC--ceEEEEEEeEEEEeecccCC----Cccc
Confidence             0000  0111112111110  0  0001334566777776678999974  79999999999886554211    2479


Q ss_pred             cCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          274 KAGNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       274 ~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      .+|.-|.-|....|-+..+++++.++.-.
T Consensus       216 ~~GSYf~s~~~~~H~~~~~e~~~vlyIRt  244 (251)
T PF14499_consen  216 DPGSYFGSPGHITHGIFITEDECVLYIRT  244 (251)
T ss_dssp             EE-TT-EE--E------EESS-EEEEEEE
T ss_pred             cCCcccccCCcccccccccCCCEEEEEEE
Confidence            99999999999999986556666666543

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=98.15  E-value=7e-06  Score=67.43  Aligned_cols=66  Identities=24%  Similarity=0.336  Sum_probs=48.3

Q ss_pred             CCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeC
Q 018395           46 KNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDT  116 (356)
Q Consensus        46 Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~  116 (356)
                      |+....+|+|+.-++.||++|++.+.+   ++  +.+.+++||++.+|+|..|.+...+++++....+...
T Consensus        12 ~~~~~~~h~h~~~~i~~v~~G~~~~~~---~~--~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~~   77 (136)
T PF02311_consen   12 PNFEFPPHWHDFYEIIYVLSGEGTLHI---DG--QEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYFS   77 (136)
T ss_dssp             TT-SEEEETT-SEEEEEEEEE-EEEEE---TT--EEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE-
T ss_pred             CCCccCCEECCCEEEEEEeCCEEEEEE---CC--EEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEEC
Confidence            455668999999999999999999976   33  4589999999999999999999887777887777664

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=98.11  E-value=2.3e-05  Score=69.11  Aligned_cols=70  Identities=16%  Similarity=0.244  Sum_probs=47.7

Q ss_pred             eccccccc-----CCeeEEEEEeceEEEEEEccCCc---eEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEEEEcCC
Q 018395          236 CSPGFSCD-----SALQVTYIVRGSGRAQIVGPDGK---RVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFSIITTP  305 (356)
Q Consensus       236 ~~PH~h~~-----~A~ei~~v~~G~~~~~iv~~~g~---~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~~~  305 (356)
                      ..-|||+.     +-.|+-+|++|+|.+-+-++.+.   +.+.-.+++||+++||.+|.|.. |.|++++.+.....++
T Consensus        69 T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~~~  147 (182)
T PF06560_consen   69 TKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWVPRD  147 (182)
T ss_dssp             ---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEEETT
T ss_pred             CCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEEecC
Confidence            44588874     46799999999999999999872   34556899999999999999999 5588889988876433

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=98.10  E-value=1.8e-05  Score=70.30  Aligned_cols=73  Identities=11%  Similarity=-0.020  Sum_probs=58.1

Q ss_pred             ceeEEEEecCCCeec-ccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEE
Q 018395          223 CGADLVRLDGKAMCS-PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFS  300 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~-PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~  300 (356)
                      +.+....+.||+-.. .||| . ..|+.||++|++.+.+-+    +  ...|++||.++||.+.+|...+ ++++++++.
T Consensus       107 ~~~~~~~~~pg~~~~~~~~h-~-~~E~~~Vl~G~~~~~~~~----~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~  178 (185)
T PRK09943        107 LAMIFETYQPGTTTGERIKH-Q-GEEIGTVLEGEIVLTING----Q--DYHLVAGQSYAINTGIPHSFSNTSAGICRIIS  178 (185)
T ss_pred             eEEEEEEccCCCCccccccc-C-CcEEEEEEEeEEEEEECC----E--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEE
Confidence            556667889998654 5556 4 689999999999988632    2  3579999999999999999844 678898888


Q ss_pred             EEc
Q 018395          301 IIT  303 (356)
Q Consensus       301 ~~~  303 (356)
                      +.+
T Consensus       179 ~~~  181 (185)
T PRK09943        179 AHT  181 (185)
T ss_pred             EeC
Confidence            764

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=98.10  E-value=1.3e-05  Score=62.82  Aligned_cols=66  Identities=23%  Similarity=0.175  Sum_probs=52.1

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      .+..+..++++||+..+.|.|.+.|.+|||+|+....     +    ....+||.++.|+|..|....  ++.+.++
T Consensus        22 ~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d~-----~----~~~~~G~~~~~p~g~~h~~~s--~~gc~~~   87 (91)
T PF12973_consen   22 TGERVSLLRLEPGASLPRHRHPGGEEILVLEGELSDG-----D----GRYGAGDWLRLPPGSSHTPRS--DEGCLIL   87 (91)
T ss_dssp             TTEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEEET-----T----CEEETTEEEEE-TTEEEEEEE--SSCEEEE
T ss_pred             ccCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEEEC-----C----ccCCCCeEEEeCCCCccccCc--CCCEEEE
Confidence            4678899999999999999999899999999998752     1    356999999999999999985  4444443

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=98.09  E-value=1.4e-05  Score=80.98  Aligned_cols=76  Identities=9%  Similarity=0.010  Sum_probs=65.5

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~  300 (356)
                      ++.+.++.+.||+-...|+|.. ..|..||++|++.+++-+    +  ...|.+||.++||+|.+|.+ |.|++++++++
T Consensus       384 ~~~v~~i~v~PG~~~~~~~H~~-~~E~~~VlsG~~~v~idg----~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~  456 (478)
T PRK15460        384 RYQVKRITVKPGEGLSVQMHHH-RAEHWVVVAGTAKVTIDG----D--IKLLGENESIYIPLGATHCLENPGKIPLDLIE  456 (478)
T ss_pred             cEEEEEEEECCCCcCCcCCCCC-CceEEEEEeeEEEEEECC----E--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence            5778999999999777888887 779999999999998765    2  35799999999999999999 45789999999


Q ss_pred             EEcC
Q 018395          301 IITT  304 (356)
Q Consensus       301 ~~~~  304 (356)
                      +.+.
T Consensus       457 V~~g  460 (478)
T PRK15460        457 VRSG  460 (478)
T ss_pred             EEcC
Confidence            8643

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.08  E-value=2.5e-05  Score=66.95  Aligned_cols=68  Identities=24%  Similarity=0.428  Sum_probs=58.2

Q ss_pred             cccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeC
Q 018395           49 FALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDT  116 (356)
Q Consensus        49 ~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~  116 (356)
                      +..-|.|..+|+-|++.|+|...+..+++++....+.+||.+.+|+|+-||+-=+.+-.++.+-+|.+
T Consensus        87 F~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~  154 (181)
T COG1791          87 FLQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTE  154 (181)
T ss_pred             HHHHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeC
Confidence            34578999999999999999999999888887788999999999999999987666656777766654

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=98.08  E-value=0.00054  Score=61.11  Aligned_cols=191  Identities=16%  Similarity=0.172  Sum_probs=122.8

Q ss_pred             eEEEEEEecCCC-cccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           37 IGAAKLALEKNG-FALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        37 ~~~~~~~l~Pg~-~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      ++--.+++.|++ ...|--- .++.++||++|+..+.+   ++  +++.|++|+-.++|+|..|.+.|...++.+|-.+-
T Consensus        61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~---~G--~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r  135 (264)
T COG3257          61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKA---EG--KTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR  135 (264)
T ss_pred             hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEE---cC--eEEEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence            334578998887 5566666 89999999999999987   33  45899999999999999999999988888887764


Q ss_pred             eCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceeeccC
Q 018395          115 DTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEE  194 (356)
Q Consensus       115 ~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~l~~  194 (356)
                      ..-        +  .+-|       +                      |-...++. ++....+.|              
T Consensus       136 k~Y--------~--~VdG-------~----------------------~~P~~~~~-Ne~ei~~~~--------------  161 (264)
T COG3257         136 KRY--------Q--PVEG-------V----------------------QAPELVSG-NESEIEPSP--------------  161 (264)
T ss_pred             ecc--------e--eecC-------c----------------------cCCcceec-ChhhCCCCC--------------
Confidence            311        1  0001       0                      00011111 100000001              


Q ss_pred             CCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeec-ccccccCCeeEEEEEeceEEEEEEccCCceEEEEEe
Q 018395          195 APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCS-PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTV  273 (356)
Q Consensus       195 ~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~-PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l  273 (356)
                          .-..+|-+.+.++++++..    +|-+..+.++|||..+ --.|.. -| =+||++|++.-..=.    .-  -.+
T Consensus       162 ----m~gtdg~~attv~P~d~r~----Dmhv~ivsFePGa~ip~aEtHvm-EH-GlyvLeGk~vYrLn~----dw--v~V  225 (264)
T COG3257         162 ----MEGTDGVIATTVLPKELRF----DMHVHIVSFEPGASIPYAETHVM-EH-GLYVLEGKGVYRLNN----NW--VPV  225 (264)
T ss_pred             ----CCCCCCeEEEeeCccccCc----ceEEEEEEecCCcccchhhhhhh-hc-ceEEEecceEEeecC----ce--EEe
Confidence                0013355566666655432    6788999999999873 223333 22 479999998544321    11  379


Q ss_pred             cCCcEEEEcCCcEEEEeeC-CCCeEEEEEE
Q 018395          274 KAGNLFIVPRFYVVSKIAD-PDGLAWFSII  302 (356)
Q Consensus       274 ~~Gdv~vvP~g~~h~~~~~-~~~~~~~~~~  302 (356)
                      ++||.+..-+..+-+.-++ ...+.++-..
T Consensus       226 ~aGD~mwm~A~cpQacyagG~g~frYLlyK  255 (264)
T COG3257         226 EAGDYIWMGAYCPQACYAGGRGAFRYLLYK  255 (264)
T ss_pred             ecccEEEeeccChhhhccCCCCceEEEEEe
Confidence            9999999888888777664 4557776643

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=97.96  E-value=2.2e-05  Score=64.86  Aligned_cols=67  Identities=22%  Similarity=0.266  Sum_probs=51.2

Q ss_pred             ecCCCcc-cCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           44 LEKNGFA-LPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        44 l~Pg~~~-~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      +-.|+.+ -.||| .+.|++.|++|++.+.+-.+++.+  .++.+||++++|+|+-|.- +..+-++.++..
T Consensus        49 sW~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~e--l~v~~GDvlliPAGvGH~r-l~sS~DF~VvGa  117 (163)
T COG4297          49 SWRGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQE--LEVGEGDVLLIPAGVGHCR-LHSSADFQVVGA  117 (163)
T ss_pred             cccccccccccccCCcceEEEEecceeEEEecCCCCce--eeecCCCEEEEecCccccc-ccCCCCeEEEcc
Confidence            3344544 46789 999999999999999997766644  7999999999999999964 444445555543

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=97.94  E-value=2.9e-05  Score=70.64  Aligned_cols=71  Identities=17%  Similarity=-0.011  Sum_probs=62.1

Q ss_pred             ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEee
Q 018395           36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      +..+..++++||+.++.|.|.+.|+.+||+|...    +..     ..+.+||.+..|+|..|...+.+++++.++++.+
T Consensus       126 ~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~----de~-----g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~d  196 (215)
T TIGR02451       126 NARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS----DET-----GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLD  196 (215)
T ss_pred             CcEEEEEEECCCCccCCCcCCCcEEEEEEEEEEE----cCC-----CccCCCeEEECCCCCCcCcccCCCCCeEEEEEec
Confidence            4578899999999999999999999999999953    221     4789999999999999999999888899888765

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=97.88  E-value=4.2e-05  Score=65.69  Aligned_cols=52  Identities=15%  Similarity=0.353  Sum_probs=42.4

Q ss_pred             ccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395          238 PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA  291 (356)
Q Consensus       238 PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~  291 (356)
                      .+||.+...|+.|+++|+..+.+.+....+  +-.|++||++++|+|.+|.-.+
T Consensus        41 ~d~H~~~tdE~FyqleG~~~l~v~d~g~~~--~v~L~eGd~flvP~gvpHsP~r   92 (159)
T TIGR03037        41 TDFHDDPGEEFFYQLKGEMYLKVTEEGKRE--DVPIREGDIFLLPPHVPHSPQR   92 (159)
T ss_pred             cccccCCCceEEEEEcceEEEEEEcCCcEE--EEEECCCCEEEeCCCCCccccc
Confidence            456665489999999999999998854223  4589999999999999999754

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=97.84  E-value=0.00033  Score=58.75  Aligned_cols=99  Identities=16%  Similarity=0.051  Sum_probs=56.7

Q ss_pred             eeeCCCeEEEEeCCCCCCCcccCceEEEEE-EecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCC-CE
Q 018395           13 VYGGNGGSYHAWCPNELPMLRQGNIGAAKL-ALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKG-DG   89 (356)
Q Consensus        13 ~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~-~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~G-Dv   89 (356)
                      .+..+.|.+......+...+.-.  ++-.+ ..++|..+..|+| ...++++|++|+..+.+-+..+ ...+.|..- ..
T Consensus        10 ~~~D~RG~L~~~e~~~~ipf~i~--rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~-~~~~~L~~~~~~   86 (131)
T PF05523_consen   10 KISDERGSLSVIERFDDIPFEIK--RVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGRE-EEEFILDEPNKG   86 (131)
T ss_dssp             EEEETTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS--EEEEEE--TTEE
T ss_pred             ceeCCCCcEEEEeccCCCCCCcc--EEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCC-cEEEEECCCCeE
Confidence            34556788877655432223211  33344 4566666999999 9999999999999998755443 356778655 59


Q ss_pred             EEeCCCcEEEEEecCCCcEEEEEEee
Q 018395           90 IALPFGVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        90 ~~iP~G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      ++||+|+.|.+.|.+++ +.++.+.+
T Consensus        87 L~Ippg~w~~~~~~s~~-svlLv~as  111 (131)
T PF05523_consen   87 LYIPPGVWHGIKNFSED-SVLLVLAS  111 (131)
T ss_dssp             EEE-TT-EEEEE---TT--EEEEEES
T ss_pred             EEECCchhhHhhccCCC-cEEEEEcC
Confidence            99999999999998777 66666544

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=97.83  E-value=6.1e-05  Score=65.74  Aligned_cols=66  Identities=17%  Similarity=0.232  Sum_probs=50.0

Q ss_pred             cCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .||.-..-|+|+  +.|+.|+++|+.++.+.+. |+ .-+..|++||++++|+|.+|.-.+ .++...+.+
T Consensus        42 Gpn~r~d~H~~~--tdE~FyqleG~~~l~v~d~-g~-~~~v~L~eGd~fllP~gvpHsP~r-~~~tv~Lvi  107 (177)
T PRK13264         42 GPNARTDFHYDP--GEEFFYQLEGDMYLKVQED-GK-RRDVPIREGEMFLLPPHVPHSPQR-EAGSIGLVI  107 (177)
T ss_pred             cCCcccccccCC--CceEEEEECCeEEEEEEcC-Cc-eeeEEECCCCEEEeCCCCCcCCcc-CCCeEEEEE
Confidence            566666668876  6899999999999999994 33 124589999999999999999754 233443333

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=97.81  E-value=0.00018  Score=62.05  Aligned_cols=68  Identities=19%  Similarity=0.194  Sum_probs=51.2

Q ss_pred             eecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC-CCeEEEEEEcCC
Q 018395          235 MCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP-DGLAWFSIITTP  305 (356)
Q Consensus       235 ~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~-~~~~~~~~~~~~  305 (356)
                      +...|.|..  .|+-|+++|+|...+-+.++ +-++-.+++||.++||+|..|+...+. ..++.+-+|+.+
T Consensus        84 f~~EH~H~d--eEvR~i~~G~g~Fdvr~~~~-~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~~  152 (157)
T PF03079_consen   84 FFEEHTHED--EEVRYIVDGSGYFDVRDGDD-VWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKDE  152 (157)
T ss_dssp             HCS-EEESS---EEEEEEECEEEEEEE-TTC-EEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESSC
T ss_pred             hheeEecCh--heEEEEeCcEEEEEEEcCCC-EEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecCC
Confidence            567899975  79999999999999998775 434568999999999999999997664 468888888543

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=97.80  E-value=8.2e-05  Score=71.18  Aligned_cols=66  Identities=11%  Similarity=-0.035  Sum_probs=55.7

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~  105 (356)
                      ...++..-.-.|..+..+|||+.-|+.|+++|++.+.+   ++  +.+.+++||++++++|.+|.+...++
T Consensus        24 ~~~~~~~~~~~~~~m~~~HwH~e~Ei~yv~~G~~~~~i---~g--~~~~l~~Gd~ili~s~~~H~~~~~~~   89 (302)
T PRK10371         24 EYQRLEIEFRPPHIMPTSHWHGQVEVNVPFDGDVEYLI---NN--EKVQINQGHITLFWACTPHQLTDPGN   89 (302)
T ss_pred             CCceeEEEeeCCCCCCCCCccccEEEEEecCCcEEEEE---CC--EEEEEcCCcEEEEecCCcccccccCC
Confidence            45667778888899999999999999999999998876   33  45899999999999999998765443

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=97.77  E-value=0.00021  Score=64.76  Aligned_cols=70  Identities=11%  Similarity=0.329  Sum_probs=53.4

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .||+....++...+   +||.+ -.|+.||++|+.++.+   +|+.   ..+++||+++||+|..|.. ...+.+.++.+
T Consensus       156 ~m~aGf~~~~~~sf---~wtl~-~dEi~YVLEGe~~l~I---dG~t---~~l~pGDvlfIPkGs~~hf-~tp~~aRflyV  224 (233)
T PRK15457        156 SMAAGFMQWENAFF---PWTLN-YDEIDMVLEGELHVRH---EGET---MIAKAGDVMFIPKGSSIEF-GTPSSVRFLYV  224 (233)
T ss_pred             ceeeEEEEEecCcc---ceecc-ceEEEEEEEeEEEEEE---CCEE---EEeCCCcEEEECCCCeEEe-cCCCCeeEEEE
Confidence            47788888887554   48888 9999999999999998   3433   5799999999999999443 22236666655


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       225 ~  225 (233)
T PRK15457        225 A  225 (233)
T ss_pred             E
Confidence            4

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.69  E-value=0.00026  Score=53.23  Aligned_cols=60  Identities=25%  Similarity=0.322  Sum_probs=45.1

Q ss_pred             ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEE
Q 018395           36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWY  101 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~  101 (356)
                      .+++....-+||.+. .+| ..+|++|||+|++++..  .++  ...++++||++++|+|+.-.+.
T Consensus         6 ~~~~g~w~~~pg~~~-~~~-~~~E~~~vleG~v~it~--~~G--~~~~~~aGD~~~~p~G~~~~w~   65 (74)
T PF05899_consen    6 VFSAGVWECTPGKFP-WPY-PEDEFFYVLEGEVTITD--EDG--ETVTFKAGDAFFLPKGWTGTWE   65 (74)
T ss_dssp             SEEEEEEEEECEEEE-EEE-SSEEEEEEEEEEEEEEE--TTT--EEEEEETTEEEEE-TTEEEEEE
T ss_pred             CEEEEEEEECCceeE-eeC-CCCEEEEEEEeEEEEEE--CCC--CEEEEcCCcEEEECCCCEEEEE
Confidence            467788888997633 223 55999999999999974  344  3389999999999999876654

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=97.66  E-value=0.00043  Score=58.42  Aligned_cols=67  Identities=21%  Similarity=0.153  Sum_probs=48.3

Q ss_pred             EEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395           39 AAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT  106 (356)
Q Consensus        39 ~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e  106 (356)
                      ...+.=.|+...--|+..++|++|-++|...+.+++. ++.++..+++||++++|++++|.-+-..++
T Consensus        35 ~VmvVGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~-g~~kdi~I~EGe~fLLP~~vpHsP~R~~~t  101 (151)
T PF06052_consen   35 IVMVVGGPNQRTDYHINETEEFFYQLKGDMCLKVVED-GKFKDIPIREGEMFLLPANVPHSPQRPADT  101 (151)
T ss_dssp             EEEEEESSB--SSEEE-SS-EEEEEEES-EEEEEEET-TEEEEEEE-TTEEEEE-TT--EEEEE-TT-
T ss_pred             EEEEEcCCCCCCccccCCcceEEEEEeCcEEEEEEeC-CceEEEEeCCCcEEecCCCCCCCCcCCCCc
Confidence            3456778888888899899999999999999999885 456779999999999999999998876554

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=97.66  E-value=0.00029  Score=60.15  Aligned_cols=73  Identities=22%  Similarity=0.296  Sum_probs=52.9

Q ss_pred             CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      ..|+++.++|+..   ..-|. ..+|+-||++|+..+.+   +|  +++..++||+++||+|..-.+.-.  ...+++++
T Consensus        75 ~~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~---~G--~~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv  144 (152)
T PF06249_consen   75 PRLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI---DG--QTVTAKPGDVIFIPKGSTITFSTP--DYARFFYV  144 (152)
T ss_dssp             -SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE---TT--EEEEEETT-EEEE-TT-EEEEEEE--EEEEEEEE
T ss_pred             CceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE---CC--EEEEEcCCcEEEECCCCEEEEecC--CCEEEEEE
Confidence            4688899999974   45688 99999999999988874   33  348999999999999987666433  24677776


Q ss_pred             eeCC
Q 018395          114 GDTS  117 (356)
Q Consensus       114 ~~~~  117 (356)
                      ..++
T Consensus       145 ~yPa  148 (152)
T PF06249_consen  145 TYPA  148 (152)
T ss_dssp             EEST
T ss_pred             ECCC
Confidence            6543

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=97.65  E-value=0.00098  Score=55.89  Aligned_cols=96  Identities=5%  Similarity=-0.070  Sum_probs=54.6

Q ss_pred             CCCcEEEEeCCCCCCCccccCceeEEEE-ecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCC-cEE
Q 018395          202 KNGGRVVLLNTKNLPLVGEVGCGADLVR-LDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAG-NLF  279 (356)
Q Consensus       202 ~~gG~~~~~~~~~~p~l~~l~~s~~~v~-l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~G-dv~  279 (356)
                      ...|.+..+...+-....-  -.+..+. ..+|..+..|+|.. .+++++|++|+.++.+-+..+.+.|  .|..- +.+
T Consensus        13 D~RG~L~~~e~~~~ipf~i--~rvy~i~~~~~~~~RG~H~Hk~-~~~~~~~l~Gs~~v~~~d~~~~~~~--~L~~~~~~L   87 (131)
T PF05523_consen   13 DERGSLSVIERFDDIPFEI--KRVYYIYNVPPGVIRGWHAHKK-TTQWFIVLSGSFKVVLDDGREEEEF--ILDEPNKGL   87 (131)
T ss_dssp             ETTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS---EEEEEEES-EEEEEE-SS-EEEE--EE--TTEEE
T ss_pred             CCCCcEEEEeccCCCCCCc--cEEEEEEcCCCCCccccccccc-ccEEEEEEeCEEEEEEecCCCcEEE--EECCCCeEE
Confidence            3477888777664322221  1244443 34455599999998 9999999999999998886655433  45444 589


Q ss_pred             EEcCCcEEEEeeCCCCeEEEEEE
Q 018395          280 IVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       280 vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      .||+|++|.+.+-++++.++.+.
T Consensus        88 ~Ippg~w~~~~~~s~~svlLv~a  110 (131)
T PF05523_consen   88 YIPPGVWHGIKNFSEDSVLLVLA  110 (131)
T ss_dssp             EE-TT-EEEEE---TT-EEEEEE
T ss_pred             EECCchhhHhhccCCCcEEEEEc
Confidence            99999999997655556666644

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=97.59  E-value=0.00049  Score=53.16  Aligned_cols=71  Identities=23%  Similarity=0.219  Sum_probs=50.9

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWF  299 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~  299 (356)
                      .++...+.|.||+.-.|-.--+ .+-+.||++|.+++++-.   +   ...+.+|++|.||+|--..+ |.+++.+.++
T Consensus        11 ~fa~G~l~Lpp~~~K~~k~s~~-~~~vF~V~~G~v~Vti~~---~---~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf   82 (85)
T PF11699_consen   11 FFASGMLELPPGGEKPPKNSRD-NTMVFYVIKGKVEVTIHE---T---SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLF   82 (85)
T ss_dssp             S-EEEEEEE-TCCCEEEEE--S-EEEEEEEEESEEEEEETT---E---EEEEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred             CceeEEEEeCCCCccCCcccCC-cEEEEEEEeCEEEEEEcC---c---EEEEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence            3778899999999987766555 889999999999999854   2   24699999999999999999 4476666654

>PRK13501 transcriptional activator RhaR; Provisional

Probab=97.56  E-value=0.00026  Score=67.02  Aligned_cols=56  Identities=14%  Similarity=0.128  Sum_probs=46.8

Q ss_pred             cCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395           45 EKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        45 ~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~  105 (356)
                      .+..-..+|||+.-|+.||++|++++.+   ++  ..+.+++||+++||+|..|.+...++
T Consensus        26 ~~~~~~~~H~H~~~ei~~i~~G~~~~~i---~~--~~~~l~~g~~~~I~p~~~H~~~~~~~   81 (290)
T PRK13501         26 YPQETFVEHTHQFCEIVIVWRGNGLHVL---ND--HPYRITCGDVFYIQAADHHSYESVHD   81 (290)
T ss_pred             CCCCCCccccccceeEEEEecCceEEEE---CC--eeeeecCCeEEEEcCCCcccccccCC
Confidence            4444567999999999999999999987   33  45899999999999999999876543

>PRK13500 transcriptional activator RhaR; Provisional

Probab=97.56  E-value=0.00032  Score=67.35  Aligned_cols=61  Identities=16%  Similarity=0.151  Sum_probs=49.3

Q ss_pred             EEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395           40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        40 ~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~  105 (356)
                      ..-.--|.....+|||+.-|++||++|++...+   ++  ..+.+++||+++||+|..|.+....+
T Consensus        51 ~v~~~~~~~~~~~H~H~~~el~~v~~G~g~~~v---~~--~~~~l~~Gdl~~I~~~~~H~~~~~~~  111 (312)
T PRK13500         51 AVADRYPQDVFAEHTHDFCELVIVWRGNGLHVL---ND--RPYRITRGDLFYIHADDKHSYASVND  111 (312)
T ss_pred             EEecCCCCCCCCccccceEEEEEEEcCeEEEEE---CC--EEEeecCCeEEEECCCCeecccccCC
Confidence            333344555678999999999999999999876   33  44899999999999999999876544

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=97.55  E-value=0.00098  Score=56.11  Aligned_cols=121  Identities=17%  Similarity=0.152  Sum_probs=66.4

Q ss_pred             CceeeccCCCCCcccCCC-cEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCC
Q 018395          187 GMAFNCEEAPLDVDIKNG-GRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG  265 (356)
Q Consensus       187 ~~~~~l~~~~~~~~~~~g-G~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g  265 (356)
                      +.+.|+.+.+-+-+...| -.++.+. .-+..++.  +.+-+-.+.||.-.++|=|.  -.|+.+|++|+|...+...++
T Consensus        10 ~~Vr~iselpq~~ygr~GLsH~TvAG-a~~hGmke--vEVwlQTfAPG~~TPiHRHs--CEEVFvVLkG~GTl~l~~~~~   84 (167)
T PF02041_consen   10 PLVRNISELPQDNYGRPGLSHITVAG-ALLHGMKE--VEVWLQTFAPGSATPIHRHS--CEEVFVVLKGSGTLYLASSHE   84 (167)
T ss_dssp             -SEEEGGGS--B-TT-TTEEEEEEE--HHHH--SS--EEEEEEEE-TT-B--EEEES--S-EEEEEEE--EEEEE--SSS
T ss_pred             ceeEEhhhCccccccCCCcceEEeeh-hhhcCcee--eeEEeeeecCCCCCCCcccc--ccEEEEEEecceEEEEecccc
Confidence            456677755544332223 2344443 22455665  56888899999999999997  479999999999999997753


Q ss_pred             c---eEEEEEecCCcEEEEcCCcEEEEeeCC--CCeEEEEEEcCCCCceeccc
Q 018395          266 K---RVLETTVKAGNLFIVPRFYVVSKIADP--DGLAWFSIITTPNPIFTHLA  313 (356)
Q Consensus       266 ~---~~~~~~l~~Gdv~vvP~g~~h~~~~~~--~~~~~~~~~~~~~p~~~~la  313 (356)
                      +   +--...+.+++.|.||.+-+|-+.|++  |++.++.+. |.-|...|+.
T Consensus        85 ~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlVii-SrpPvkvf~y  136 (167)
T PF02041_consen   85 KYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVII-SRPPVKVFIY  136 (167)
T ss_dssp             SS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEE-ESSS--EEEE
T ss_pred             cCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEe-cCCCeEEEEe
Confidence            1   223457999999999999999995543  688888877 4456666665

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=97.55  E-value=0.00029  Score=57.69  Aligned_cols=63  Identities=24%  Similarity=0.429  Sum_probs=42.1

Q ss_pred             CCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC-CCeEEEEEE
Q 018395          232 GKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP-DGLAWFSII  302 (356)
Q Consensus       232 ~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~-~~~~~~~~~  302 (356)
                      ++-...||||.  -.++.||++|++.+.+=+    +  ...+++||++++|+|.+|...... +++++..+.
T Consensus        12 ~~~~~~~h~h~--~~~i~~v~~G~~~~~~~~----~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~   75 (136)
T PF02311_consen   12 PNFEFPPHWHD--FYEIIYVLSGEGTLHIDG----Q--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIY   75 (136)
T ss_dssp             TT-SEEEETT---SEEEEEEEEE-EEEEETT----E--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEE
T ss_pred             CCCccCCEECC--CEEEEEEeCCEEEEEECC----E--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEE
Confidence            45567899997  479999999999985432    2  257999999999999999986644 366655553

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=97.54  E-value=0.00061  Score=53.23  Aligned_cols=65  Identities=18%  Similarity=0.172  Sum_probs=50.0

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWF  299 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~  299 (356)
                      +..+..+++.||+..+.|.|+  +.|.+||++|+..    +.++      +..+||.++.|.|..|...+ .+++.++
T Consensus        23 g~~~~L~r~~pG~~~p~H~H~--g~ee~~VLeG~~~----d~~~------~~~~G~~~~~p~g~~h~~~s-~~gc~~~   87 (91)
T PF12973_consen   23 GERVSLLRLEPGASLPRHRHP--GGEEILVLEGELS----DGDG------RYGAGDWLRLPPGSSHTPRS-DEGCLIL   87 (91)
T ss_dssp             TEEEEEEEE-TTEEEEEEEES--S-EEEEEEECEEE----ETTC------EEETTEEEEE-TTEEEEEEE-SSCEEEE
T ss_pred             cCEEEEEEECCCCCcCccCCC--CcEEEEEEEEEEE----ECCc------cCCCCeEEEeCCCCccccCc-CCCEEEE
Confidence            467899999999999999997  4688899999985    3332      36899999999999999875 5555443

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=97.51  E-value=0.0013  Score=53.94  Aligned_cols=80  Identities=13%  Similarity=0.264  Sum_probs=69.0

Q ss_pred             cccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEE
Q 018395          219 GEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAW  298 (356)
Q Consensus       219 ~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~  298 (356)
                      .++|.|+-...+.+|.-...|| .| =-|-+||++|+|+++-+.. |+.   ..++||.+...-+.=.|++.+.. ++..
T Consensus        31 DgmGFS~h~T~i~aGtet~~~Y-kn-HlEAvyci~G~Gev~~~~~-G~~---~~i~pGt~YaLd~hD~H~lra~~-dm~~  103 (126)
T PF06339_consen   31 DGMGFSFHETTIYAGTETHIHY-KN-HLEAVYCIEGEGEVEDLDT-GEV---HPIKPGTMYALDKHDRHYLRAKT-DMRL  103 (126)
T ss_pred             CCCCEEEEEEEEeCCCeeEEEe-cC-ceEEEEEEeceEEEEEccC-CcE---EEcCCCeEEecCCCccEEEEecC-CEEE
Confidence            4578999999999999998898 35 6799999999999999874 433   58999999999999999998877 9999


Q ss_pred             EEEEcCC
Q 018395          299 FSIITTP  305 (356)
Q Consensus       299 ~~~~~~~  305 (356)
                      +|+|+..
T Consensus       104 vCVFnPp  110 (126)
T PF06339_consen  104 VCVFNPP  110 (126)
T ss_pred             EEEcCCC
Confidence            9999655

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=97.49  E-value=0.00065  Score=63.83  Aligned_cols=52  Identities=23%  Similarity=0.281  Sum_probs=44.2

Q ss_pred             CCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec
Q 018395           47 NGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK  103 (356)
Q Consensus        47 g~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~  103 (356)
                      +....+|||+.-|+.||++|++.+.+   ++  +.+.+++||++.+|+|..|.....
T Consensus        33 ~~~~~~H~H~~~ei~~v~~G~~~~~i---~~--~~~~l~~g~l~~i~p~~~H~~~~~   84 (278)
T PRK10296         33 ESVSGLHQHDYYEFTLVLTGRYYQEI---NG--KRVLLERGDFVFIPLGSHHQSFYE   84 (278)
T ss_pred             hcCCCCcccccEEEEEEEeceEEEEE---CC--EEEEECCCcEEEeCCCCccceeee
Confidence            44568999999999999999999886   33  348999999999999999976554

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.44  E-value=0.00052  Score=66.22  Aligned_cols=69  Identities=22%  Similarity=0.160  Sum_probs=56.0

Q ss_pred             eEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           37 IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        37 ~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      ++.....|.||....+|-|.+..++||++|+|+..+   ++  ...+.++||+|++|+-..|...|.  +++.++.
T Consensus       250 i~~~~q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~i---g~--~~~~W~~gD~f~vPsW~~~~h~a~--~da~Lf~  318 (335)
T TIGR02272       250 IGAFIQLLPKGFRTATYRSTDATVFCVVEGRGQVRI---GD--AVFRFSPKDVFVVPSWHPVRFEAS--DDAVLFS  318 (335)
T ss_pred             HHHHHhccCCCCCCCCccccccEEEEEEeCeEEEEE---CC--EEEEecCCCEEEECCCCcEecccC--CCeEEEE
Confidence            444457889999999999999999999999999987   23  358999999999999988887775  3444443

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PRK13502 transcriptional activator RhaR; Provisional

Probab=97.43  E-value=0.00054  Score=64.44  Aligned_cols=61  Identities=13%  Similarity=0.135  Sum_probs=49.3

Q ss_pred             EEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395           40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        40 ~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~  105 (356)
                      ..-...|+-...+|||+.-|+.||++|++.+.+   ++  ..+.+++||++++|+|.+|.+...++
T Consensus        21 ~~~~~~~~~~~~~H~h~~~~l~~v~~G~~~~~i---~~--~~~~l~~g~l~li~~~~~H~~~~~~~   81 (282)
T PRK13502         21 TVADRYPQDVFAEHTHEFCELVMVWRGNGLHVL---NE--RPYRITRGDLFYIRAEDKHSYTSVND   81 (282)
T ss_pred             EEecCCCCCCCCccccceEEEEEEecCcEEEEE---CC--EEEeecCCcEEEECCCCcccccccCC
Confidence            334445555578999999999999999999986   23  45899999999999999999865443

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.35  E-value=0.0015  Score=56.16  Aligned_cols=69  Identities=23%  Similarity=0.328  Sum_probs=56.9

Q ss_pred             eecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC-CCCeEEEEEEcCCC
Q 018395          235 MCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD-PDGLAWFSIITTPN  306 (356)
Q Consensus       235 ~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~-~~~~~~~~~~~~~~  306 (356)
                      +..=|.|.  ..|+-|++.|+|...+.+++|. ++.-.+.+||.+.+|.|.=||.--+ +..++.+-+|+...
T Consensus        87 F~~EH~H~--d~EvRy~vaG~GiF~v~~~d~~-~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~~~~  156 (181)
T COG1791          87 FLQEHLHT--DDEVRYFVAGEGIFDVHSPDGK-VYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFTEPE  156 (181)
T ss_pred             HHHHhccC--CceEEEEEecceEEEEECCCCc-EEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEeeCCC
Confidence            34569996  6899999999999999999974 4666889999999999999998554 55688888775544

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.34  E-value=0.00058  Score=51.35  Aligned_cols=58  Identities=19%  Similarity=0.264  Sum_probs=41.8

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK  289 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~  289 (356)
                      +++..-.-+||.+.   |+.. .+|+.||++|++.++.-  +|.+   .++++||++++|+|+....
T Consensus         7 ~~~g~w~~~pg~~~---~~~~-~~E~~~vleG~v~it~~--~G~~---~~~~aGD~~~~p~G~~~~w   64 (74)
T PF05899_consen    7 FSAGVWECTPGKFP---WPYP-EDEFFYVLEGEVTITDE--DGET---VTFKAGDAFFLPKGWTGTW   64 (74)
T ss_dssp             EEEEEEEEECEEEE---EEES-SEEEEEEEEEEEEEEET--TTEE---EEEETTEEEEE-TTEEEEE
T ss_pred             EEEEEEEECCceeE---eeCC-CCEEEEEEEeEEEEEEC--CCCE---EEEcCCcEEEECCCCEEEE
Confidence            34555567787643   3344 68999999999888744  5544   5799999999999986554

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=97.29  E-value=0.00066  Score=63.94  Aligned_cols=61  Identities=16%  Similarity=0.074  Sum_probs=48.3

Q ss_pred             CCCcccCeeeC-CCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           46 KNGFALPHYCD-SARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        46 Pg~~~~pH~h~-a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      -+....+|||+ .-+++||++|++.+.+   ++  ..+.+++||++++|+|..|.+....+....++
T Consensus        32 ~~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~--~~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i   93 (287)
T TIGR02297        32 FGRNMPVHFHDRYYQLHYLTEGSIALQL---DE--HEYSEYAPCFFLTPPSVPHGFVTDLDADGHVL   93 (287)
T ss_pred             cCCCCCCcccccceeEEEEeeCceEEEE---CC--EEEEecCCeEEEeCCCCccccccCCCcceEEE
Confidence            34568999996 7999999999998876   33  35899999999999999999876544433333

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.28  E-value=0.002  Score=54.38  Aligned_cols=74  Identities=20%  Similarity=0.334  Sum_probs=54.5

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      ..++++.+++++  -..|..-+-+|+-|||+|+..+.+   +++  +..-++||++++|.|..--+--.|.  ++++++.
T Consensus        98 ~~l~aG~m~~~~--~tf~wtl~yDe~d~VlEGrL~V~~---~g~--tv~a~aGDvifiPKgssIefst~ge--a~flyvt  168 (176)
T COG4766          98 SRLGAGLMEMKN--TTFPWTLNYDEIDYVLEGRLHVRI---DGR--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLYVT  168 (176)
T ss_pred             Cccccceeeecc--ccCcceecccceeEEEeeeEEEEE---cCC--eEecCCCcEEEecCCCeEEEeccce--EEEEEEE
Confidence            457778888888  223333399999999999998875   232  3688999999999998766654443  7888776


Q ss_pred             eCC
Q 018395          115 DTS  117 (356)
Q Consensus       115 ~~~  117 (356)
                      .+.
T Consensus       169 yPa  171 (176)
T COG4766         169 YPA  171 (176)
T ss_pred             ccc
Confidence            543

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=97.20  E-value=0.00061  Score=58.15  Aligned_cols=58  Identities=22%  Similarity=0.411  Sum_probs=49.2

Q ss_pred             cccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395           49 FALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT  106 (356)
Q Consensus        49 ~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e  106 (356)
                      +...|.|..+|+-||+.|+|..-|-+.++.....-++.||.+++|+|.-|...-+.+.
T Consensus        85 FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n  142 (179)
T KOG2107|consen   85 FFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSN  142 (179)
T ss_pred             HHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchH
Confidence            4679999999999999999999987777665567899999999999999987655443

>PRK13503 transcriptional activator RhaS; Provisional

Probab=97.19  E-value=0.00064  Score=63.65  Aligned_cols=55  Identities=11%  Similarity=0.054  Sum_probs=46.0

Q ss_pred             cCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecC
Q 018395           45 EKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKE  104 (356)
Q Consensus        45 ~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g  104 (356)
                      .+.....+|||+.-|++||++|.+++.+   ++  ..+.+++||++++|+|..|.+.+..
T Consensus        23 ~~~~~~~~H~H~~~ei~~v~~G~~~~~i---~~--~~~~l~~g~~~~i~~~~~h~~~~~~   77 (278)
T PRK13503         23 LPQAAFPEHHHDFHEIVIVEHGTGIHVF---NG--QPYTLSGGTVCFVRDHDRHLYEHTD   77 (278)
T ss_pred             CccccccccccCceeEEEEecCceeeEe---cC--CcccccCCcEEEECCCccchhhhcc
Confidence            3445678999999999999999999986   22  3489999999999999999876653

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=97.14  E-value=0.0064  Score=49.62  Aligned_cols=61  Identities=18%  Similarity=0.300  Sum_probs=47.5

Q ss_pred             cCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWY  101 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~  101 (356)
                      +..+..+.-.-.||.   .+++ ...|++|+|+|++++.  . ++.+ ..++++||++++|+|+.=.|.
T Consensus        42 dg~~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T--~-d~Ge-~v~~~aGD~~~~~~G~~g~W~  103 (116)
T COG3450          42 DGQVETGIWECTPGK---FRVTYDEDEFCHILEGRVEVT--P-DGGE-PVEVRAGDSFVFPAGFKGTWE  103 (116)
T ss_pred             CCCeeEeEEEecCcc---ceEEcccceEEEEEeeEEEEE--C-CCCe-EEEEcCCCEEEECCCCeEEEE
Confidence            345677788888886   4566 7799999999999885  3 3333 479999999999999876554

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=96.98  E-value=0.0034  Score=58.96  Aligned_cols=50  Identities=16%  Similarity=0.242  Sum_probs=40.8

Q ss_pred             CCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEe
Q 018395          233 KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI  290 (356)
Q Consensus       233 g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~  290 (356)
                      +....||||.  ..|+.||++|++.+.+   +|+.   ..+.+||+++||+|..|...
T Consensus        33 ~~~~~~H~H~--~~ei~~v~~G~~~~~i---~~~~---~~l~~g~l~~i~p~~~H~~~   82 (278)
T PRK10296         33 ESVSGLHQHD--YYEFTLVLTGRYYQEI---NGKR---VLLERGDFVFIPLGSHHQSF   82 (278)
T ss_pred             hcCCCCcccc--cEEEEEEEeceEEEEE---CCEE---EEECCCcEEEeCCCCcccee
Confidence            3356899995  6899999999998776   3333   47999999999999999763

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=96.96  E-value=0.0031  Score=57.42  Aligned_cols=71  Identities=7%  Similarity=0.064  Sum_probs=58.4

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC-CCCeEEEEE
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD-PDGLAWFSI  301 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~-~~~~~~~~~  301 (356)
                      ..+..+++.||+-++.|.|.  ..|+.+|++|+.    .+..      ..+.+||++..|.|..|...+. .+++..+++
T Consensus       127 ~~v~Ll~i~pG~~~p~H~H~--G~E~tlVLeG~f----~de~------g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v  194 (215)
T TIGR02451       127 ARVRLLYIEAGQSIPQHTHK--GFELTLVLHGAF----SDET------GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAV  194 (215)
T ss_pred             cEEEEEEECCCCccCCCcCC--CcEEEEEEEEEE----EcCC------CccCCCeEEECCCCCCcCcccCCCCCeEEEEE
Confidence            56889999999999999995  679999999994    3433      2578999999999999998775 467888888


Q ss_pred             EcCC
Q 018395          302 ITTP  305 (356)
Q Consensus       302 ~~~~  305 (356)
                      .+..
T Consensus       195 ~dap  198 (215)
T TIGR02451       195 LDAP  198 (215)
T ss_pred             ecCC
Confidence            7443

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=96.81  E-value=0.0031  Score=60.35  Aligned_cols=59  Identities=8%  Similarity=0.036  Sum_probs=47.0

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA  291 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~  291 (356)
                      .+.-.-.+..|..+|||.  --|+.|+++|++.+.+-   |+   ...+.+||+++|+.|.+|....
T Consensus        28 ~~~~~~~~~~m~~~HwH~--e~Ei~yv~~G~~~~~i~---g~---~~~l~~Gd~ili~s~~~H~~~~   86 (302)
T PRK10371         28 LEIEFRPPHIMPTSHWHG--QVEVNVPFDGDVEYLIN---NE---KVQINQGHITLFWACTPHQLTD   86 (302)
T ss_pred             eEEEeeCCCCCCCCCccc--cEEEEEecCCcEEEEEC---CE---EEEEcCCcEEEEecCCcccccc
Confidence            444556778899999996  47999999999876653   22   2579999999999999998643

>PRK13500 transcriptional activator RhaR; Provisional

Probab=96.79  E-value=0.0048  Score=59.21  Aligned_cols=54  Identities=13%  Similarity=0.109  Sum_probs=42.6

Q ss_pred             CCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC
Q 018395          232 GKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP  293 (356)
Q Consensus       232 ~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~  293 (356)
                      |.....+|||.  ..||+||++|++...+=+   +   ...+.+||+++||+|.+|.....+
T Consensus        57 ~~~~~~~H~H~--~~el~~v~~G~g~~~v~~---~---~~~l~~Gdl~~I~~~~~H~~~~~~  110 (312)
T PRK13500         57 PQDVFAEHTHD--FCELVIVWRGNGLHVLND---R---PYRITRGDLFYIHADDKHSYASVN  110 (312)
T ss_pred             CCCCCCccccc--eEEEEEEEcCeEEEEECC---E---EEeecCCeEEEECCCCeecccccC
Confidence            33346899995  789999999999866533   2   357999999999999999975433

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=96.77  E-value=0.0074  Score=55.23  Aligned_cols=65  Identities=20%  Similarity=0.201  Sum_probs=47.5

Q ss_pred             EEEEecC-CCcccCeeeCCCEEEEEEeCeEEEEEEcCCC-----------------------------------ceEEEE
Q 018395           40 AKLALEK-NGFALPHYCDSARVAYVLQGSGVAGIVLPEK-----------------------------------EEKVVA   83 (356)
Q Consensus        40 ~~~~l~P-g~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~-----------------------------------~~~~~~   83 (356)
                      ..+-|.+ |+....|+...+-++.+++|+=++.++.|..                                   +.....
T Consensus       133 ~~l~ig~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~  212 (251)
T PF13621_consen  133 SNLWIGPPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVV  212 (251)
T ss_dssp             EEEEEE-TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEE
T ss_pred             cEEEEeCCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEE
Confidence            3455555 6677888877788999999999999988751                                   124689


Q ss_pred             EcCCCEEEeCCCcEEEEEecC
Q 018395           84 IKKGDGIALPFGVVTWWYNKE  104 (356)
Q Consensus        84 l~~GDv~~iP~G~~H~~~N~g  104 (356)
                      |++||+++||+|+.|++.|..
T Consensus       213 l~pGD~LfiP~gWwH~V~~~~  233 (251)
T PF13621_consen  213 LEPGDVLFIPPGWWHQVENLS  233 (251)
T ss_dssp             EETT-EEEE-TT-EEEEEEST
T ss_pred             ECCCeEEEECCCCeEEEEEcC
Confidence            999999999999999999983

...

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=96.75  E-value=0.071  Score=52.93  Aligned_cols=207  Identities=11%  Similarity=-0.008  Sum_probs=109.5

Q ss_pred             Ceee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCC-CCCCCCceeEEe
Q 018395           52 PHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTS-KGHKAGEFTNFF  129 (356)
Q Consensus        52 pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~-~~~~pg~~~~f~  129 (356)
                      .-++ ++++++|+.+|++.+.-.  -|+   .++++||+++||+|+.+.+.= .+.+.+.+.+-..+ ++.-|..=    
T Consensus       148 ~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l-~~gp~rgyi~E~~g~~f~LPdlG----  217 (438)
T PRK05341        148 YFYNADGELLIVPQQGRLRLATE--LGV---LDVEPGEIAVIPRGVKFRVEL-PDGPARGYVCENYGAPFRLPDLG----  217 (438)
T ss_pred             eeecCCCCEEEEEEeCCEEEEEe--ccc---eEecCCCEEEEcCccEEEEec-CCCCeeEEEEEecCCcccCCCCC----
Confidence            3355 999999999999999642  232   699999999999999988763 23344444433222 34445310    


Q ss_pred             ecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcC----CCCC-----cccCCCceeeccCCCCC--
Q 018395          130 LTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKL----PEPK-----KEHRDGMAFNCEEAPLD--  198 (356)
Q Consensus       130 lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~----~~p~-----~~~~~~~~~~l~~~~~~--  198 (356)
                      ..|.+.+..  ++     -|..+....+..  ...-.+++|.......    -.|-     ...-.+++|||..=.|.  
T Consensus       218 piG~nglan--pR-----DF~~P~a~~ed~--~~~~~vv~K~~G~l~~~~~~hsPfDVVaWhGn~~Pykydl~~F~pi~s  288 (438)
T PRK05341        218 PIGANGLAN--PR-----DFLTPVAAFEDR--EGPFELVAKFGGRLWRAEIDHSPLDVVAWHGNYAPYKYDLRRFNTIGS  288 (438)
T ss_pred             cccccCCCC--hh-----HcCCCcchhccc--CCCEEEEEEeCCeeEEEecCCCCceEeeecCcccceEeehhheeeccc
Confidence            013222221  11     122222222221  1112345554432211    1231     12224567777743332  


Q ss_pred             c----ccCCCcEEEEeCCCCCCCccccCcee--EEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEE
Q 018395          199 V----DIKNGGRVVLLNTKNLPLVGEVGCGA--DLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETT  272 (356)
Q Consensus       199 ~----~~~~gG~~~~~~~~~~p~l~~l~~s~--~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~  272 (356)
                      +    -.+.--.+.++ +.+-|.....+.-+  -|---.+++++.|.+|.|-.+|+++.+.|.-...          ...
T Consensus       289 vs~dH~dPSI~tvlta-ps~~pg~a~~dFVIF~PRw~v~e~TfrpPyyHrNv~sEfmgli~G~y~ak----------~~g  357 (438)
T PRK05341        289 ISFDHPDPSIFTVLTS-PSDTPGTANIDFVIFPPRWLVAENTFRPPWFHRNVMSEFMGLIHGVYDAK----------AEG  357 (438)
T ss_pred             cccccCCCCceEEEec-cCCCCCccccceEEECCcccCCCCccCCCCCccchhhhhhhhcccccccc----------ccC
Confidence            0    01111122222 22344433222111  0111278999999999998889888888864221          113


Q ss_pred             ecCCcEEEEcCCcEEE
Q 018395          273 VKAGNLFIVPRFYVVS  288 (356)
Q Consensus       273 l~~Gdv~vvP~g~~h~  288 (356)
                      +.+|.+-.=|.+.+|=
T Consensus       358 f~pGg~SLH~~~~pHG  373 (438)
T PRK05341        358 FVPGGASLHNCMSPHG  373 (438)
T ss_pred             cCCCeeeecCCCCCCC
Confidence            7789999999998874

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=96.72  E-value=0.0048  Score=57.20  Aligned_cols=72  Identities=14%  Similarity=0.101  Sum_probs=44.8

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~  300 (356)
                      |.+..+|++.+|=..+||+|+  +++-+||++|.....     +.+.-..-|.+|.-+..|+|..|+.-+ +.+.+.|+.
T Consensus        35 g~~~~~vkf~~g~~~pph~H~--~~~~~~Vi~G~~~~~-----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e  107 (251)
T PF14499_consen   35 GPSGMRVKFPAGFSSPPHIHN--ADYRGTVISGELHNG-----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIE  107 (251)
T ss_dssp             S-EEEEEEE-TT-EE--BEES--S-EEEEEEESEEEET-----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE
T ss_pred             CcceEEEEcCCCccCCCccee--eeEEEEEEEeEEEcC-----CCcccceecCCCceEeccCCCceeeeccCccEEEEEE
Confidence            688999999999999999995  889999999976543     223223469999999999999998644 334466654

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=96.68  E-value=0.035  Score=48.89  Aligned_cols=71  Identities=17%  Similarity=0.079  Sum_probs=56.3

Q ss_pred             ecCCCcccCeee-C--CCEEEEEEeCeEEEEEEcCC------CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           44 LEKNGFALPHYC-D--SARVAYVLQGSGVAGIVLPE------KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        44 l~Pg~~~~pH~h-~--a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      -.+|.++.+|+| .  ...+++|++|+....+|+.-      ++....+|.+  +..++||+|..|-..+.+++ ..++.
T Consensus        51 S~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y  129 (176)
T TIGR01221        51 SYKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLY  129 (176)
T ss_pred             ecCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEE
Confidence            367999999998 4  68999999999999988842      3344567766  67999999999999998766 55555


Q ss_pred             Eee
Q 018395          113 LGD  115 (356)
Q Consensus       113 i~~  115 (356)
                      ..+
T Consensus       130 ~~~  132 (176)
T TIGR01221       130 KCT  132 (176)
T ss_pred             eCC
Confidence            443

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.68  E-value=0.0053  Score=57.55  Aligned_cols=92  Identities=20%  Similarity=0.124  Sum_probs=66.4

Q ss_pred             CCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCc
Q 018395           17 NGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGV   96 (356)
Q Consensus        17 ~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~   96 (356)
                      +|-.++.+++.+- .-....+++.+--|.||....+|.|....++-|.+|+|.+.|   ++  +.++..+||+|++|.=.
T Consensus       242 dG~~~ryvNP~TG-g~~mptI~a~mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~I---g~--~rf~~~~~D~fvVPsW~  315 (351)
T COG3435         242 DGYKMRYVNPVTG-GYAMPTIGAFMQLLPPGFHGKAHRHTDSTIYHVVEGSGYTII---GG--ERFDWSAGDIFVVPSWA  315 (351)
T ss_pred             CcceEEEecCCCC-CCcCchHHHHHHhcCCcccCCceeccCCEEEEEEecceeEEE---CC--EEeeccCCCEEEccCcc
Confidence            4555566654331 111123444556789999999999977789999999999987   33  44899999999999999


Q ss_pred             EEEEEecCCCcEEEEEEee
Q 018395           97 VTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        97 ~H~~~N~g~e~l~~l~i~~  115 (356)
                      .|...|. .+++.++|+.|
T Consensus       316 ~~~~~~g-s~da~LFsfsD  333 (351)
T COG3435         316 WHEHVNG-SEDAVLFSFSD  333 (351)
T ss_pred             eeecccC-CcceEEEecCC
Confidence            9999886 44566666543

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=96.64  E-value=0.035  Score=53.12  Aligned_cols=60  Identities=23%  Similarity=0.333  Sum_probs=39.8

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD  292 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~  292 (356)
                      .++.++++......   ...+ ...+++|++|++++..   ++.   +..|++|+.++||++...+.+.+
T Consensus       235 F~~~~~~~~~~~~~---~~~~-~~~il~v~~G~~~i~~---~~~---~~~l~~G~~~~ipa~~~~~~i~g  294 (302)
T TIGR00218       235 FSVYKWDISGKAEF---IQQQ-SALILSVLEGSGRIKS---GGK---TLPLKKGESFFIPAHLGPFTIEG  294 (302)
T ss_pred             eEEEEEEeCCceee---ccCC-CcEEEEEEcceEEEEE---CCE---EEEEecccEEEEccCCccEEEEe
Confidence            44556666543111   1233 5679999999998752   222   24799999999999987666544

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=96.63  E-value=0.015  Score=50.98  Aligned_cols=97  Identities=16%  Similarity=0.165  Sum_probs=66.2

Q ss_pred             ceeeCCCeEEEEeCC-CCCC------CcccCceEEEEEEecCCCcccCeee-CC-CEEEEEEeCeEEEEEEcCC------
Q 018395           12 QVYGGNGGSYHAWCP-NELP------MLRQGNIGAAKLALEKNGFALPHYC-DS-ARVAYVLQGSGVAGIVLPE------   76 (356)
Q Consensus        12 ~~~~~~~G~i~~~~~-~~~p------~l~~~~~~~~~~~l~Pg~~~~pH~h-~a-~e~~yVl~G~~~~~vv~~~------   76 (356)
                      .++.-+-|.+.++-. ..+-      .....+++...    ||.++..||| .- .+++.|++|+....+++-.      
T Consensus        17 ~~~~D~RG~F~E~~~~~~~~~~~~~~~~~Q~n~S~S~----~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTy   92 (173)
T COG1898          17 KVFGDERGFFTETFKAEEFSTLGLPLDFVQDNHSFSY----PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTY   92 (173)
T ss_pred             cccccccceeeehhhhhhhhhccCccccccceEEEec----CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCc
Confidence            345556677765432 1121      12224555444    9999999999 55 8999999999999888743      


Q ss_pred             CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           77 KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        77 ~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      ++.....|.+  ...++||+|++|-++|.+++. .++..
T Consensus        93 g~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~-~~~y~  130 (173)
T COG1898          93 GKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA-EVVYK  130 (173)
T ss_pred             ceEEEEEecCCCceEEEeCCcccceeEEccCce-EEEEE
Confidence            1223345554  489999999999999999885 44443

>PRK13501 transcriptional activator RhaR; Provisional

Probab=96.63  E-value=0.0065  Score=57.45  Aligned_cols=48  Identities=13%  Similarity=0.155  Sum_probs=40.1

Q ss_pred             ecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395          236 CSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA  291 (356)
Q Consensus       236 ~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~  291 (356)
                      ..||||.  -.|+.||++|++.+.|   +|+   ...+.+||+++||.|.+|....
T Consensus        31 ~~~H~H~--~~ei~~i~~G~~~~~i---~~~---~~~l~~g~~~~I~p~~~H~~~~   78 (290)
T PRK13501         31 FVEHTHQ--FCEIVIVWRGNGLHVL---NDH---PYRITCGDVFYIQAADHHSYES   78 (290)
T ss_pred             Ccccccc--ceeEEEEecCceEEEE---CCe---eeeecCCeEEEEcCCCcccccc
Confidence            5699995  6899999999999886   332   3579999999999999999743

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=96.59  E-value=0.058  Score=53.46  Aligned_cols=61  Identities=13%  Similarity=0.125  Sum_probs=40.8

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP  293 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~  293 (356)
                      ..+.++++..+....   ... ..+|++|++|++++.  + .|.+   ..|++|++++||++...+...++
T Consensus       321 F~~~~~~l~~~~~~~---~~~-~~~Illv~~G~~~i~--~-~~~~---~~l~~G~~~fipa~~~~~~~~g~  381 (389)
T PRK15131        321 FAFSLHDLSDQPTTL---SQQ-SAAILFCVEGEAVLW--K-GEQQ---LTLKPGESAFIAANESPVTVSGH  381 (389)
T ss_pred             cEEEEEEECCceEEe---cCC-CcEEEEEEcceEEEE--e-CCeE---EEECCCCEEEEeCCCccEEEecc
Confidence            345555555432222   224 568999999999874  2 3323   46999999999999887776543

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=96.50  E-value=0.01  Score=58.78  Aligned_cols=201  Identities=13%  Similarity=0.054  Sum_probs=78.1

Q ss_pred             ee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEee-CCCCCCCCceeEEeec
Q 018395           54 YC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD-TSKGHKAGEFTNFFLT  131 (356)
Q Consensus        54 ~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~-~~~~~~pg~~~~f~la  131 (356)
                      ++ ++++++|+.+|++++.-  +-|   ...+++||.++||+|+.+.+.=.  ++++.+.+-. .+++.-|.    .=.-
T Consensus       142 ~NaDGD~Li~~q~G~l~l~T--e~G---~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~E~~~~~~~lPe----~G~i  210 (424)
T PF04209_consen  142 RNADGDELIFPQQGSLRLET--EFG---RLDVRPGDYVVIPRGTRFRVELP--GPARGYIIENFGSHFRLPE----LGPI  210 (424)
T ss_dssp             EESSEEEEEEEEES-EEEEE--TTE---EEEE-TTEEEEE-TT--EEEE-S--SSEEEEEEEEES--EE--------GGG
T ss_pred             EcCCCCEEEEEEECCEEEEe--cCe---eEEEcCCeEEEECCeeEEEEEeC--CCceEEEEEcCCCeEEecC----cCcc
Confidence            46 89999999999999864  223   26899999999999999987655  4566655432 23333331    1111


Q ss_pred             ccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcC----CCCC-----cccCCCceeeccCCCCCcccC
Q 018395          132 GANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKL----PEPK-----KEHRDGMAFNCEEAPLDVDIK  202 (356)
Q Consensus       132 g~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~----~~p~-----~~~~~~~~~~l~~~~~~~~~~  202 (356)
                      |.++.+.  +     .-|..+....+.-.  ..-.+++|.......    -.|-     ...--+++|||..-.|..   
T Consensus       211 G~ngla~--~-----RDf~~P~a~~~d~~--~~~~v~~K~~G~l~~~~~~hsPfDVVgW~Gn~~Pykynl~~F~pi~---  278 (424)
T PF04209_consen  211 GANGLAN--P-----RDFRTPVAAFEDDE--GEWEVVVKFRGGLFSATYPHSPFDVVGWHGNYYPYKYNLRDFEPIN---  278 (424)
T ss_dssp             TTS-BS---G-----GGEEEE-------E--EEEEEEEEETTEEEEEEEEE-S--EEEEEES---EEEEGGG-B------
T ss_pred             ccCCCCC--h-----hhhcCCCcccccCC--CCEEEEEEECCeeEEEEeCCCchheeeecCccccEEEehHHhhhhc---
Confidence            3222221  1     12222221111111  122355554433210    1231     122346788888544321   


Q ss_pred             CCcEEE-EeCCCCCCCc----cccCceeEE-E------EecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEE
Q 018395          203 NGGRVV-LLNTKNLPLV----GEVGCGADL-V------RLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLE  270 (356)
Q Consensus       203 ~gG~~~-~~~~~~~p~l----~~l~~s~~~-v------~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~  270 (356)
                        +.+. ..++.-|-.|    ..-|..+.. |      ....+.++.|.+|.|-.+|.++.+.|.-...          .
T Consensus       279 --s~~~dH~dPsi~tvlT~ps~~~g~~v~dFviF~PRw~v~e~tfrpPyyHrNv~sE~mg~i~G~y~a~----------~  346 (424)
T PF04209_consen  279 --SVSYDHPDPSIHTVLTAPSEAPGFAVCDFVIFPPRWLVAEHTFRPPYYHRNVMSEFMGLIRGNYDAS----------R  346 (424)
T ss_dssp             ---SSSS---GGGGEEEEEE-SSTT-EEEEEEEE-SEEE--TTS--S---B--SSEEEEEEEE-----------------
T ss_pred             --ceecccCCCceeEEEeccCCCCCceEEEEEeeCCcccccCCCccCCCCCcceeeeeeeeeccccccc----------c
Confidence              1110 1111111111    111222222 2      2344788999999997778777777764221          1


Q ss_pred             EEecCCcEEEEcCCcEEEE
Q 018395          271 TTVKAGNLFIVPRFYVVSK  289 (356)
Q Consensus       271 ~~l~~Gdv~vvP~g~~h~~  289 (356)
                      ..+.+|.+-.=|.|.+|=-
T Consensus       347 ~gf~pGg~SLH~~~~pHGP  365 (424)
T PF04209_consen  347 DGFEPGGISLHPCGTPHGP  365 (424)
T ss_dssp             ----TT-EEEE-TT--B--
T ss_pred             CCcCCCceeccCCCCCCCC
Confidence            2478999999999999964

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=96.42  E-value=0.0066  Score=57.11  Aligned_cols=52  Identities=19%  Similarity=0.152  Sum_probs=42.2

Q ss_pred             CCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395          233 KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA  291 (356)
Q Consensus       233 g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~  291 (356)
                      +....||||.+ -.|++||++|++.+.+-   + +  ...+++||++++|+|.+|....
T Consensus        33 ~~~~~~H~H~~-~~~l~~~~~G~~~~~~~---~-~--~~~l~~g~~~ii~~~~~H~~~~   84 (287)
T TIGR02297        33 GRNMPVHFHDR-YYQLHYLTEGSIALQLD---E-H--EYSEYAPCFFLTPPSVPHGFVT   84 (287)
T ss_pred             CCCCCCccccc-ceeEEEEeeCceEEEEC---C-E--EEEecCCeEEEeCCCCcccccc
Confidence            44578999975 58999999999976653   2 2  3579999999999999999754

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=96.38  E-value=0.021  Score=52.19  Aligned_cols=66  Identities=12%  Similarity=0.182  Sum_probs=48.0

Q ss_pred             eEEEEecC-CCeecccccccCCeeEEEEEeceEEEEEEccCC----------------------------------ceEE
Q 018395          225 ADLVRLDG-KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG----------------------------------KRVL  269 (356)
Q Consensus       225 ~~~v~l~~-g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g----------------------------------~~~~  269 (356)
                      ...+-+.+ |+....|+.+  .+-+..+++|+=++.++.|.-                                  .+.+
T Consensus       132 ~~~l~ig~~gs~t~lH~D~--~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~  209 (251)
T PF13621_consen  132 SSNLWIGPPGSFTPLHYDP--SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPY  209 (251)
T ss_dssp             EEEEEEE-TTEEEEEEE-S--SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EE
T ss_pred             ccEEEEeCCCceeeeeECc--hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCcee
Confidence            45567766 6677788876  467999999999999999951                                  0356


Q ss_pred             EEEecCCcEEEEcCCcEEEEeeC
Q 018395          270 ETTVKAGNLFIVPRFYVVSKIAD  292 (356)
Q Consensus       270 ~~~l~~Gdv~vvP~g~~h~~~~~  292 (356)
                      ..+|++||+++||+||+|+..+-
T Consensus       210 ~~~l~pGD~LfiP~gWwH~V~~~  232 (251)
T PF13621_consen  210 EVVLEPGDVLFIPPGWWHQVENL  232 (251)
T ss_dssp             EEEEETT-EEEE-TT-EEEEEES
T ss_pred             EEEECCCeEEEECCCCeEEEEEc
Confidence            77999999999999999999775

...

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=96.38  E-value=0.017  Score=49.41  Aligned_cols=70  Identities=20%  Similarity=0.366  Sum_probs=46.8

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .|++..++|+..   ..-|... =.|+-||++|+..+.  + +|+.   ...++|||++||+|.-..... .+.++++-+
T Consensus        76 ~l~~Gf~~le~~---~f~wtl~-YDEi~~VlEG~L~i~--~-~G~~---~~A~~GDvi~iPkGs~I~fst-~~~a~~~Yv  144 (152)
T PF06249_consen   76 RLSAGFMELEKT---SFPWTLT-YDEIKYVLEGTLEIS--I-DGQT---VTAKPGDVIFIPKGSTITFST-PDYARFFYV  144 (152)
T ss_dssp             SSEEEEEEEEEE---EEEEE-S-SEEEEEEEEEEEEEE--E-TTEE---EEEETT-EEEE-TT-EEEEEE-EEEEEEEEE
T ss_pred             ceeeEEEEEeCC---CccEEee-cceEEEEEEeEEEEE--E-CCEE---EEEcCCcEEEECCCCEEEEec-CCCEEEEEE
Confidence            477888888874   3468887 899999999987766  2 3544   357899999999997765532 334555544


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       145 ~  145 (152)
T PF06249_consen  145 T  145 (152)
T ss_dssp             E
T ss_pred             E
Confidence            3

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PRK13502 transcriptional activator RhaR; Provisional

Probab=96.33  E-value=0.015  Score=54.69  Aligned_cols=56  Identities=13%  Similarity=0.080  Sum_probs=43.9

Q ss_pred             ecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC
Q 018395          230 LDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP  293 (356)
Q Consensus       230 l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~  293 (356)
                      ..|+-...+|||.  ..|+.||++|++++.+-+   +   ...+++||+++||+|-+|.....+
T Consensus        25 ~~~~~~~~~H~h~--~~~l~~v~~G~~~~~i~~---~---~~~l~~g~l~li~~~~~H~~~~~~   80 (282)
T PRK13502         25 RYPQDVFAEHTHE--FCELVMVWRGNGLHVLNE---R---PYRITRGDLFYIRAEDKHSYTSVN   80 (282)
T ss_pred             CCCCCCCCccccc--eEEEEEEecCcEEEEECC---E---EEeecCCcEEEECCCCcccccccC
Confidence            3444447899995  689999999999988632   2   257999999999999999875433

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=96.28  E-value=0.011  Score=49.95  Aligned_cols=55  Identities=15%  Similarity=0.282  Sum_probs=36.3

Q ss_pred             cCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK  289 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~  289 (356)
                      .|+.-.  -||.+.+.|+.|-++|...+-+++.. +. -+-.+++||+|..|++.+|.-
T Consensus        41 GPN~R~--DyHine~eE~FyQ~kG~m~Lkv~e~g-~~-kdi~I~EGe~fLLP~~vpHsP   95 (151)
T PF06052_consen   41 GPNQRT--DYHINETEEFFYQLKGDMCLKVVEDG-KF-KDIPIREGEMFLLPANVPHSP   95 (151)
T ss_dssp             SSB--S--SEEE-SS-EEEEEEES-EEEEEEETT-EE-EEEEE-TTEEEEE-TT--EEE
T ss_pred             CCCCCC--ccccCCcceEEEEEeCcEEEEEEeCC-ce-EEEEeCCCcEEecCCCCCCCC
Confidence            555444  34445578999999999999999954 32 256899999999999999985

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=96.27  E-value=0.087  Score=46.14  Aligned_cols=69  Identities=9%  Similarity=0.012  Sum_probs=54.3

Q ss_pred             CCCeecccccccCC-eeEEEEEeceEEEEEEccCCc-----eEEEEEecCC--cEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          232 GKAMCSPGFSCDSA-LQVTYIVRGSGRAQIVGPDGK-----RVLETTVKAG--NLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       232 ~g~~~~PH~h~~~A-~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~~G--dv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      +|-++..|||.. - .+++.|++|++..-.+|-.-.     +.....|.+-  .++.||.|++|=..+-++.++++-.
T Consensus        54 ~GvlRGlHyq~~-~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~  130 (173)
T COG1898          54 PGVLRGLHYQHK-PQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYK  130 (173)
T ss_pred             CCeeEEEEcccC-CCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEE
Confidence            999999999998 6 899999999999999987532     2333356654  8999999999999886665554443

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=96.23  E-value=0.14  Score=50.82  Aligned_cols=213  Identities=12%  Similarity=-0.022  Sum_probs=110.4

Q ss_pred             cCCCcc--cCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCC-CCC
Q 018395           45 EKNGFA--LPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTS-KGH  120 (356)
Q Consensus        45 ~Pg~~~--~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~-~~~  120 (356)
                      .++.-+  ..-++ ++++++|+.+|++.+.-.  -|+   ..+++||+++||+|+.+.+.=.+  +.+.+.+-..+ ++.
T Consensus       133 ~~~~sM~~~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~g--p~rgyi~E~~g~~f~  205 (429)
T TIGR01015       133 LCNASMENRAFYNADGDFLIVPQQGALLITTE--FGR---LLVEPNEICVIPRGVRFRVTVLE--PARGYICEVYGAHFQ  205 (429)
T ss_pred             eCCCCcccceeeccCCCEEEEEEeCcEEEEEe--ccc---eEecCCCEEEecCccEEEEeeCC--CceEEEEeccCCccc
Confidence            444433  33355 999999999999999642  232   69999999999999999886554  34444332222 344


Q ss_pred             CCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCc---C-CCCC-----cccCCCceee
Q 018395          121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAK---L-PEPK-----KEHRDGMAFN  191 (356)
Q Consensus       121 ~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~---~-~~p~-----~~~~~~~~~~  191 (356)
                      -|..=    ..|++.+..  ++     -|..+...++.......-.+++|......   . -.|-     ...-.+++||
T Consensus       206 LPdlG----piG~nglan--~R-----DF~~P~a~fed~~~~~~~~vv~K~~G~l~~~~~~hsPfDVVaWhGn~~Pykyd  274 (429)
T TIGR01015       206 LPDLG----PIGANGLAN--PR-----DFEAPVAAFEDREVPGPYTVINKFQGSLFAAKQDHSPFDVVAWHGNYVPYKYD  274 (429)
T ss_pred             CCCCC----cccccCCCC--HH-----HcCCCccchhccccCCCeEEEEEeCCeeEEEecCCCCcceeeecCcccceEee
Confidence            44210    012222221  11     22223222222110011234555443321   1 1231     1223467888


Q ss_pred             ccCCCCC--cc----cCCCcEEEEeCCCCCCCccccCceeE----EEEecCCCeecccccccCCeeEEEEEeceEEEEEE
Q 018395          192 CEEAPLD--VD----IKNGGRVVLLNTKNLPLVGEVGCGAD----LVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIV  261 (356)
Q Consensus       192 l~~~~~~--~~----~~~gG~~~~~~~~~~p~l~~l~~s~~----~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv  261 (356)
                      |..-.|.  +.    .+.--.+.++ +.+-|...-  ++..    |-.-.+++++.|.+|.|-.+|+++.+.|.-...  
T Consensus       275 l~~F~pi~svs~dH~dPSI~tvlta-ps~~pg~av--~dFviFpPRw~vae~TfrpPyyHrN~~sEfmgli~G~y~ak--  349 (429)
T TIGR01015       275 LKRFNVINSVSFDHPDPSIFTVLTA-PSDRPGTAI--ADFVIFPPRWLVAEKTFRPPYYHRNCMSEFMGLITGAYDAK--  349 (429)
T ss_pred             hhheeeccccccccCCCCceEEEec-cCCCCCceE--EEEEeeCCcccCCCCccCCCCCccchhhhhhhhcccccccc--
Confidence            8754332  10    0111111111 112222211  1122    112348999999999997788888887753111  


Q ss_pred             ccCCceEEEEEecCCcEEEEcCCcEEE
Q 018395          262 GPDGKRVLETTVKAGNLFIVPRFYVVS  288 (356)
Q Consensus       262 ~~~g~~~~~~~l~~Gdv~vvP~g~~h~  288 (356)
                              +..+.+|.+-.=|.+.+|=
T Consensus       350 --------~~gf~pGg~SlH~~~~pHG  368 (429)
T TIGR01015       350 --------EGGFVPGGGSLHNMMTPHG  368 (429)
T ss_pred             --------cCCcCCCeeeecCCCCCCC
Confidence                    1137889999999998874

Missing in human disease alkaptonuria.

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.17  E-value=0.0084  Score=51.33  Aligned_cols=55  Identities=18%  Similarity=0.323  Sum_probs=47.1

Q ss_pred             CeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395          234 AMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA  291 (356)
Q Consensus       234 ~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~  291 (356)
                      .++++|-|..  .||-||+.|+|+.-+-+-++ +-+.--++.||++++|+|.-|-...
T Consensus        84 ~FfEEhlh~d--eeiR~il~GtgYfDVrd~dd-~WIRi~vekGDlivlPaGiyHRFTt  138 (179)
T KOG2107|consen   84 SFFEEHLHED--EEIRYILEGTGYFDVRDKDD-QWIRIFVEKGDLIVLPAGIYHRFTT  138 (179)
T ss_pred             HHHHHhcCch--hheEEEeecceEEeeccCCC-CEEEEEEecCCEEEecCcceeeeec
Confidence            3689999997  59999999999999998885 4355679999999999999998744

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=96.17  E-value=0.038  Score=48.69  Aligned_cols=73  Identities=21%  Similarity=0.154  Sum_probs=54.4

Q ss_pred             EEecCCCcccCeee-CC---CEEEEEEeCeEEEEEEcC--C----CceEEEEEcCCC--EEEeCCCcEEEEEecCCCcEE
Q 018395           42 LALEKNGFALPHYC-DS---ARVAYVLQGSGVAGIVLP--E----KEEKVVAIKKGD--GIALPFGVVTWWYNKEDTELV  109 (356)
Q Consensus        42 ~~l~Pg~~~~pH~h-~a---~e~~yVl~G~~~~~vv~~--~----~~~~~~~l~~GD--v~~iP~G~~H~~~N~g~e~l~  109 (356)
                      -.-.+|.++.+|+| ..   ..++.|++|+....+++-  +    ++.....|.+++  .++||+|..|-..+.+++ ..
T Consensus        48 S~s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~-a~  126 (176)
T PF00908_consen   48 SVSKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD-AE  126 (176)
T ss_dssp             EEEETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE-EE
T ss_pred             EEccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc-eE
Confidence            34455999999999 43   589999999999988872  2    455567887775  799999999999998776 55


Q ss_pred             EEEEee
Q 018395          110 VLFLGD  115 (356)
Q Consensus       110 ~l~i~~  115 (356)
                      +++..+
T Consensus       127 v~Y~~t  132 (176)
T PF00908_consen  127 VLYKVT  132 (176)
T ss_dssp             EEEEES
T ss_pred             EEEecC
Confidence            555443

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=96.15  E-value=0.013  Score=47.77  Aligned_cols=57  Identities=16%  Similarity=0.219  Sum_probs=41.2

Q ss_pred             eeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395          224 GADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK  289 (356)
Q Consensus       224 s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~  289 (356)
                      .+..=.-+||-.   +|+-. .+|.+++++|+++++  ..+|+.   .++++||+++||+|+.-..
T Consensus        46 ~~GiWe~TpG~~---r~~y~-~~E~chil~G~v~~T--~d~Ge~---v~~~aGD~~~~~~G~~g~W  102 (116)
T COG3450          46 ETGIWECTPGKF---RVTYD-EDEFCHILEGRVEVT--PDGGEP---VEVRAGDSFVFPAGFKGTW  102 (116)
T ss_pred             eEeEEEecCccc---eEEcc-cceEEEEEeeEEEEE--CCCCeE---EEEcCCCEEEECCCCeEEE
Confidence            344445577766   46666 789999999987554  434433   4799999999999997654

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=96.12  E-value=0.057  Score=47.59  Aligned_cols=71  Identities=10%  Similarity=0.029  Sum_probs=53.8

Q ss_pred             cCCCeecccccccCC---eeEEEEEeceEEEEEEccCC-----ceEEEEEecCCc--EEEEcCCcEEEEeeCCCCeEEEE
Q 018395          231 DGKAMCSPGFSCDSA---LQVTYIVRGSGRAQIVGPDG-----KRVLETTVKAGN--LFIVPRFYVVSKIADPDGLAWFS  300 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A---~ei~~v~~G~~~~~iv~~~g-----~~~~~~~l~~Gd--v~vvP~g~~h~~~~~~~~~~~~~  300 (356)
                      .+|.++.+|+|.. -   .+++.|++|++..-++|-.-     .+.....|.+++  .++||+|++|-..+-.+++.++-
T Consensus        51 ~~gvlRGlH~q~~-~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~Y  129 (176)
T PF00908_consen   51 KKGVLRGLHYQSP-PYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVLY  129 (176)
T ss_dssp             ETTBEEEEEEEST-TT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEEE
T ss_pred             cccEEEEEEEecC-CCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEEE
Confidence            4599999999987 4   68999999999999999542     234556787775  79999999999987666666555


Q ss_pred             EE
Q 018395          301 II  302 (356)
Q Consensus       301 ~~  302 (356)
                      ..
T Consensus       130 ~~  131 (176)
T PF00908_consen  130 KV  131 (176)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=95.99  E-value=0.11  Score=45.74  Aligned_cols=71  Identities=8%  Similarity=0.059  Sum_probs=53.6

Q ss_pred             cCCCeeccccccc-CCeeEEEEEeceEEEEEEccCCc-----eEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFSCD-SALQVTYIVRGSGRAQIVGPDGK-----RVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h~~-~A~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+|.++.+|+|.. .-.+++.|++|+...-+||..-.     +.....|.+  +..++||+|++|-..+-.+++.++-.
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~  130 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYK  130 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEe
Confidence            6799999999831 13689999999999999997532     233446766  66999999999998775555555544

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=95.88  E-value=0.047  Score=52.66  Aligned_cols=73  Identities=15%  Similarity=0.196  Sum_probs=47.6

Q ss_pred             eeEEEEecCCC--eecccccccCCeeEEEEEeceEEEEEEccCC-----------------ceEEEEEecCCcEEEEcCC
Q 018395          224 GADLVRLDGKA--MCSPGFSCDSALQVTYIVRGSGRAQIVGPDG-----------------KRVLETTVKAGNLFIVPRF  284 (356)
Q Consensus       224 s~~~v~l~~g~--~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g-----------------~~~~~~~l~~Gdv~vvP~g  284 (356)
                      ..+.+.+.|+|  =+.|||-..  .-+++=+.|+=+..+..+..                 ....+..|+||||+|+|+|
T Consensus       114 ~~~n~Y~tp~g~~g~~~H~D~~--dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG  191 (319)
T PF08007_consen  114 VGANAYLTPPGSQGFGPHYDDH--DVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRG  191 (319)
T ss_dssp             EEEEEEEETSSBEESECEE-SS--EEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT
T ss_pred             cceEEEecCCCCCCccCEECCc--ccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCC
Confidence            45677899998  778999653  45666678988999988421                 1245679999999999999


Q ss_pred             cEEEEeeCCCCeEE
Q 018395          285 YVVSKIADPDGLAW  298 (356)
Q Consensus       285 ~~h~~~~~~~~~~~  298 (356)
                      ++|.-.+....+.+
T Consensus       192 ~~H~~~~~~~S~hl  205 (319)
T PF08007_consen  192 WWHQAVTTDPSLHL  205 (319)
T ss_dssp             -EEEEEESS-EEEE
T ss_pred             ccCCCCCCCCceEE
Confidence            99998765544443

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=95.82  E-value=0.07  Score=47.93  Aligned_cols=85  Identities=19%  Similarity=0.156  Sum_probs=65.7

Q ss_pred             EEeCCCCCCCcccCceEEEEEEecCCCcccCe-eeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEE
Q 018395           22 HAWCPNELPMLRQGNIGAAKLALEKNGFALPH-YCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWW  100 (356)
Q Consensus        22 ~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH-~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~  100 (356)
                      ..+++++    -..+|.+..++++||+.++-- .|-.+.=+|||+|++...+   + ... .++++||.+.+-+-.+.++
T Consensus       171 ttv~P~d----~r~Dmhv~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrL---n-~dw-v~V~aGD~mwm~A~cpQac  241 (264)
T COG3257         171 TTVLPKE----LRFDMHVHIVSFEPGASIPYAETHVMEHGLYVLEGKGVYRL---N-NNW-VPVEAGDYIWMGAYCPQAC  241 (264)
T ss_pred             EeeCccc----cCcceEEEEEEecCCcccchhhhhhhhcceEEEecceEEee---c-Cce-EEeecccEEEeeccChhhh
Confidence            4455543    235789999999999987533 4556677999999999876   2 122 7999999999999999999


Q ss_pred             EecCCCcEEEEEEee
Q 018395          101 YNKEDTELVVLFLGD  115 (356)
Q Consensus       101 ~N~g~e~l~~l~i~~  115 (356)
                      +..|...++.|.--|
T Consensus       242 yagG~g~frYLlyKD  256 (264)
T COG3257         242 YAGGRGAFRYLLYKD  256 (264)
T ss_pred             ccCCCCceEEEEEec
Confidence            999888888876433

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=95.77  E-value=1.7  Score=40.68  Aligned_cols=87  Identities=14%  Similarity=0.080  Sum_probs=55.3

Q ss_pred             EEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCC--------CEEE
Q 018395           20 SYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKG--------DGIA   91 (356)
Q Consensus        20 ~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~G--------Dv~~   91 (356)
                      .+...+....   ...-+.+..++|++|.....-.-+-+-.++.|+|++++.+   ++. ..+++..-        |++|
T Consensus        13 ~~~~i~~~~~---g~~~~~~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~---~g~-~~~~l~~R~~vF~~~~d~lY   85 (261)
T PF04962_consen   13 LVYSITPENA---GWMYMGFGVLRLEAGESLEFELERRELGVVNLGGKATVTV---DGE-EFYELGGRESVFDGPPDALY   85 (261)
T ss_dssp             -EEECTCCCC---CCCCBECCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEE---TTE-EEEEE-TTSSGGGS--EEEE
T ss_pred             EEEEECCCcc---CccccceEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEe---CCc-eEEEecccccccCCCCcEEE
Confidence            3555554332   3344566789999988775553356666778899999987   332 33677776        9999


Q ss_pred             eCCCcEEEEEecCCCcEEEEEEee
Q 018395           92 LPFGVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        92 iP~G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      +|.|..-.+.+.++  +++.....
T Consensus        86 vp~g~~~~i~a~~~--ae~~~~sa  107 (261)
T PF04962_consen   86 VPRGTKVVIFASTD--AEFAVCSA  107 (261)
T ss_dssp             E-TT--EEEEESST--EEEEEEEE
T ss_pred             eCCCCeEEEEEcCC--CEEEEEcc
Confidence            99999988888544  55654433

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>PRK13503 transcriptional activator RhaS; Provisional

Probab=95.73  E-value=0.024  Score=52.96  Aligned_cols=54  Identities=13%  Similarity=0.051  Sum_probs=42.7

Q ss_pred             cCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD  292 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~  292 (356)
                      .+.....+|||.  ..|++||++|++...+=+.      ...+++||++++|++-.|.....
T Consensus        23 ~~~~~~~~H~H~--~~ei~~v~~G~~~~~i~~~------~~~l~~g~~~~i~~~~~h~~~~~   76 (278)
T PRK13503         23 LPQAAFPEHHHD--FHEIVIVEHGTGIHVFNGQ------PYTLSGGTVCFVRDHDRHLYEHT   76 (278)
T ss_pred             CccccccccccC--ceeEEEEecCceeeEecCC------cccccCCcEEEECCCccchhhhc
Confidence            344556889995  6899999999998776542      25799999999999999976443

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=95.46  E-value=0.18  Score=48.74  Aligned_cols=66  Identities=24%  Similarity=0.233  Sum_probs=45.0

Q ss_pred             EEEEEecCCC--cccCeeeCCCEEEEEEeCeEEEEEEcCCC------------------ceEEEEEcCCCEEEeCCCcEE
Q 018395           39 AAKLALEKNG--FALPHYCDSARVAYVLQGSGVAGIVLPEK------------------EEKVVAIKKGDGIALPFGVVT   98 (356)
Q Consensus        39 ~~~~~l~Pg~--~~~pH~h~a~e~~yVl~G~~~~~vv~~~~------------------~~~~~~l~~GDv~~iP~G~~H   98 (356)
                      ..-+.+.|++  -+.|||-+.+-+++=+.|+=+..+..+..                  ......|++||++|+|+|++|
T Consensus       115 ~~n~Y~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H  194 (319)
T PF08007_consen  115 GANAYLTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWH  194 (319)
T ss_dssp             EEEEEEETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EE
T ss_pred             ceEEEecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccC
Confidence            3456677877  77888877777777788998888876311                  123589999999999999999


Q ss_pred             EEEecC
Q 018395           99 WWYNKE  104 (356)
Q Consensus        99 ~~~N~g  104 (356)
                      .....+
T Consensus       195 ~~~~~~  200 (319)
T PF08007_consen  195 QAVTTD  200 (319)
T ss_dssp             EEEESS
T ss_pred             CCCCCC
Confidence            999987

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=95.32  E-value=0.31  Score=42.81  Aligned_cols=77  Identities=14%  Similarity=-0.056  Sum_probs=53.7

Q ss_pred             CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCc--------eEEEEEcCCCEEEeCCCcEEEEEecC-
Q 018395           35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKE--------EKVVAIKKGDGIALPFGVVTWWYNKE-  104 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~--------~~~~~l~~GDv~~iP~G~~H~~~N~g-  104 (356)
                      ..+.+..+.-.||...+.|=| .+..++.|++|+.+-........        .....+..|.++.++.+..|.+.|.+ 
T Consensus        73 ~~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~  152 (175)
T PF05995_consen   73 ERFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSG  152 (175)
T ss_dssp             CT-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-S
T ss_pred             CCeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCC
Confidence            468889999999999999999 68889999999988877654322        12245678888888999999999876 


Q ss_pred             CCcEEEE
Q 018395          105 DTELVVL  111 (356)
Q Consensus       105 ~e~l~~l  111 (356)
                      +++..-|
T Consensus       153 ~~~avSL  159 (175)
T PF05995_consen  153 DEPAVSL  159 (175)
T ss_dssp             SS-EEEE
T ss_pred             CCCEEEE
Confidence            6654443

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=94.95  E-value=0.18  Score=42.75  Aligned_cols=68  Identities=16%  Similarity=0.364  Sum_probs=47.7

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      +++...+.++ ..+  -|-.+ -+|+-||++|+..|.+-+   +.+   .-.+|||++||+|.-.-+-...+ +.|+-+
T Consensus       100 l~aG~m~~~~-~tf--~wtl~-yDe~d~VlEGrL~V~~~g---~tv---~a~aGDvifiPKgssIefst~ge-a~flyv  167 (176)
T COG4766         100 LGAGLMEMKN-TTF--PWTLN-YDEIDYVLEGRLHVRIDG---RTV---IAGAGDVIFIPKGSSIEFSTTGE-AKFLYV  167 (176)
T ss_pred             cccceeeecc-ccC--cceec-ccceeEEEeeeEEEEEcC---CeE---ecCCCcEEEecCCCeEEEeccce-EEEEEE
Confidence            6677778887 332  46666 889999999999877644   333   36799999999998766533233 555544

>PLN02288 mannose-6-phosphate isomerase

Probab=94.75  E-value=0.45  Score=47.22  Aligned_cols=57  Identities=19%  Similarity=0.200  Sum_probs=37.7

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCc
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFY  285 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~  285 (356)
                      .++.++++.++.-.. ..-.. ..+|++|++|++++..  ..+..  ...|++|++++||++.
T Consensus       334 F~v~~~~l~~~~~~~-~~~~~-gp~Illv~~G~~~i~~--~~~~~--~~~l~~G~~~fv~a~~  390 (394)
T PLN02288        334 FEVDHCDVPPGASVV-FPAVP-GPSVFLVIEGEGVLST--GSSED--GTAAKRGDVFFVPAGT  390 (394)
T ss_pred             eEEEEEEeCCCCeEe-ecCCC-CCEEEEEEcCEEEEec--CCccc--eEEEeceeEEEEeCCC
Confidence            557777787765322 11123 5689999999998742  22211  2469999999999874

>PF12852 Cupin_6: Cupin

Probab=94.66  E-value=0.13  Score=45.38  Aligned_cols=46  Identities=24%  Similarity=0.286  Sum_probs=36.4

Q ss_pred             CCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395           57 SARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        57 a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~  105 (356)
                      ...+.+|++|++.+.+ . ++. ....|++||++++|.|..|++....+
T Consensus        35 ~~~fh~V~~G~~~l~~-~-~~~-~~~~L~~GDivllp~g~~H~l~~~~~   80 (186)
T PF12852_consen   35 GASFHVVLRGSCWLRV-P-GGG-EPIRLEAGDIVLLPRGTAHVLSSDPD   80 (186)
T ss_pred             ceEEEEEECCeEEEEE-c-CCC-CeEEecCCCEEEEcCCCCeEeCCCCC
Confidence            3678889999999985 2 212 34899999999999999999966443

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=94.62  E-value=4.1  Score=38.41  Aligned_cols=68  Identities=12%  Similarity=0.154  Sum_probs=45.4

Q ss_pred             EEEecCCCcccCeee-CCCEE-EEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec--CCCcEEEEEE
Q 018395           41 KLALEKNGFALPHYC-DSARV-AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK--EDTELVVLFL  113 (356)
Q Consensus        41 ~~~l~Pg~~~~pH~h-~a~e~-~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~--g~e~l~~l~i  113 (356)
                      .+.|+.+....-.+. ...|+ ++.+.|++.+.+   ++  .++.|.+.|.+|+|.|...+....  ...+++|...
T Consensus        56 ~l~l~~~~~~~~~~fl~rrE~giV~lgG~~~V~v---dG--~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~  127 (276)
T PRK00924         56 PLKLEAGKQLGVSYFLERRELGIINIGGAGTVTV---DG--ETYELGHRDALYVGKGAKEVVFASADAANPAKFYLN  127 (276)
T ss_pred             ceecccCccccceeecCCcEEEEEEccceEEEEE---CC--EEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence            355555555555555 66665 557889999986   33  347899999999999988766642  2345666543

>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes

Probab=94.55  E-value=0.82  Score=38.66  Aligned_cols=97  Identities=13%  Similarity=0.137  Sum_probs=63.3

Q ss_pred             CCeEEEEeCCCCCCCc------ccCceEEEEEEecCCCcccCeeeCCCEEEEEEeC-eEEEEEEcCCCceEEEEEc----
Q 018395           17 NGGSYHAWCPNELPML------RQGNIGAAKLALEKNGFALPHYCDSARVAYVLQG-SGVAGIVLPEKEEKVVAIK----   85 (356)
Q Consensus        17 ~~G~i~~~~~~~~p~l------~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G-~~~~~vv~~~~~~~~~~l~----   85 (356)
                      +||++++.........      ....++....-|.++.....|-.+++|+.+-..| ..++-++.+++......|.    
T Consensus        15 EGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~   94 (139)
T PF06172_consen   15 EGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFSAWHRVDSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLA   94 (139)
T ss_dssp             TSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEEEEEEESSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTC
T ss_pred             CCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCCccEEcCCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            7898876432211110      1234667778899988777777789998888888 5888888898876655563    


Q ss_pred             CC--CEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           86 KG--DGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        86 ~G--Dv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      +|  =.++||+|+.....-.+...-.++..
T Consensus        95 ~g~~~q~vVp~G~W~aa~l~~~~~y~Lvsc  124 (139)
T PF06172_consen   95 AGERPQVVVPAGTWQAAELEPEGDYSLVSC  124 (139)
T ss_dssp             TTEBSEEEE-TTSEEEEEECESSSEEEEEE
T ss_pred             CCceEEEEECCCEEEEccccCCCCEEEEEE
Confidence            34  36899999988775444444555543

; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.

>KOG3706 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.40  E-value=0.025  Score=56.17  Aligned_cols=86  Identities=22%  Similarity=0.287  Sum_probs=63.1

Q ss_pred             CCCcEEEEeCCCCCCC--------cccc--CceeEEEEecCCCe--ecccccccCCeeEEEEEeceEEEEEEccC-----
Q 018395          202 KNGGRVVLLNTKNLPL--------VGEV--GCGADLVRLDGKAM--CSPGFSCDSALQVTYIVRGSGRAQIVGPD-----  264 (356)
Q Consensus       202 ~~gG~~~~~~~~~~p~--------l~~l--~~s~~~v~l~~g~~--~~PH~h~~~A~ei~~v~~G~~~~~iv~~~-----  264 (356)
                      ..|.++..++++.|-.        |+..  -+-.+.+.|+|-+-  ++|||- + -.-.+.=++|+=+..+..|.     
T Consensus       285 q~~cSiqllnPqty~drlwq~cevlqeqFgc~vGaNvYLTPagSqGfaPHyD-d-IeaFvlQvEGrK~Wrly~P~~~~ee  362 (629)
T KOG3706|consen  285 QKGCSIQLLNPQTYKDRLWQICEVLQEQFGCLVGANVYLTPAGSQGFAPHYD-D-IEAFVLQVEGRKHWRLYHPTVPLEE  362 (629)
T ss_pred             hcCceEEeeCchhHHHHHHHHHHHHHHHhccccccceeecCCCCCCCCCchh-h-hhhhhheeccceeeEeecCCCcHhh
Confidence            5588888888887754        1111  24456788887544  489995 2 44466678899999998885     


Q ss_pred             --------------CceEEEEEecCCcEEEEcCCcEEEE
Q 018395          265 --------------GKRVLETTVKAGNLFIVPRFYVVSK  289 (356)
Q Consensus       265 --------------g~~~~~~~l~~Gdv~vvP~g~~h~~  289 (356)
                                    |+-+++..|++||++|||+|++|--
T Consensus       363 l~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA  401 (629)
T KOG3706|consen  363 LALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQA  401 (629)
T ss_pred             hhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeec
Confidence                          2347778899999999999999974

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A

Probab=94.21  E-value=0.33  Score=38.36  Aligned_cols=62  Identities=21%  Similarity=0.254  Sum_probs=35.0

Q ss_pred             EecCCCeecccccccCCeeEEEEE---eceEEEEEEccCCc-----------------eEEEEEecCCcEEEEcCCcEEE
Q 018395          229 RLDGKAMCSPGFSCDSALQVTYIV---RGSGRAQIVGPDGK-----------------RVLETTVKAGNLFIVPRFYVVS  288 (356)
Q Consensus       229 ~l~~g~~~~PH~h~~~A~ei~~v~---~G~~~~~iv~~~g~-----------------~~~~~~l~~Gdv~vvP~g~~h~  288 (356)
                      ..++|+...+|.|+++--.-+|-+   ++.+.+.+.++++.                 ..+.-+.++||+++||.-+.|.
T Consensus         6 i~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H~   85 (101)
T PF13759_consen    6 IYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWHG   85 (101)
T ss_dssp             EE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEEE
T ss_pred             EeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEEe
Confidence            457899999999998332344444   24566777777431                 1334478899999999999999


Q ss_pred             Ee
Q 018395          289 KI  290 (356)
Q Consensus       289 ~~  290 (356)
                      ..
T Consensus        86 v~   87 (101)
T PF13759_consen   86 VP   87 (101)
T ss_dssp             E-
T ss_pred             cc
Confidence            83

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=94.19  E-value=0.48  Score=37.80  Aligned_cols=67  Identities=25%  Similarity=0.219  Sum_probs=47.2

Q ss_pred             EEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           40 AKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        40 ~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      ..++|+||+....... .-+-++||++|++.+.     +..  ..+.+|+.+++..|..-.+.+.+ ++++++.+.
T Consensus         2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~~--~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~   69 (104)
T PF05726_consen    2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GEE--DPLEAGQLVVLEDGDEIELTAGE-EGARFLLLG   69 (104)
T ss_dssp             EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TTT--EEEETTEEEEE-SECEEEEEESS-SSEEEEEEE
T ss_pred             EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CCc--ceECCCcEEEECCCceEEEEECC-CCcEEEEEE
Confidence            4688999998765544 6678999999998762     222  57999999999988877777764 557777654

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=93.97  E-value=1.7  Score=41.63  Aligned_cols=60  Identities=15%  Similarity=0.233  Sum_probs=39.6

Q ss_pred             ceeEEEEecC-CCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC
Q 018395          223 CGADLVRLDG-KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP  293 (356)
Q Consensus       223 ~s~~~v~l~~-g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~  293 (356)
                      .++.+.++.. ..+...    . ...|++|++|++.+..=   |++   ..|++|+.+++|+...-+.+-|.
T Consensus       242 F~l~~~~i~~~~~~~~~----~-~~~il~v~eG~~~l~~~---~~~---~~l~~G~s~~ipa~~~~~~i~g~  302 (312)
T COG1482         242 FALYKWDISGTAEFIKQ----E-SFSILLVLEGEGTLIGG---GQT---LKLKKGESFFIPANDGPYTIEGE  302 (312)
T ss_pred             eEEEEEeccChhhhccC----C-CcEEEEEEcCeEEEecC---CEE---EEEcCCcEEEEEcCCCcEEEEec
Confidence            4555555553 323222    2 45799999999977643   322   57999999999999666654443

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=93.70  E-value=0.33  Score=42.13  Aligned_cols=73  Identities=14%  Similarity=0.073  Sum_probs=45.4

Q ss_pred             eEEEEEEecCCCcccCeeeCC---CEEEEEEe---CeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEE
Q 018395           37 IGAAKLALEKNGFALPHYCDS---ARVAYVLQ---GSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVV  110 (356)
Q Consensus        37 ~~~~~~~l~Pg~~~~pH~h~a---~e~~yVl~---G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~  110 (356)
                      ..+....|.||+.+.||.-..   -.+.+-|.   ..+.+.+   ++  ..+..++|+++++-....|+..|.|+++ ++
T Consensus        80 ~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v---~~--~~~~w~~G~~~~fD~s~~H~~~N~~~~~-Rv  153 (163)
T PF05118_consen   80 GRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV---GG--ETRHWREGECWVFDDSFEHEVWNNGDED-RV  153 (163)
T ss_dssp             EEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE---TT--EEEB--CTEEEEE-TTS-EEEEESSSS--EE
T ss_pred             hhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE---CC--eEEEeccCcEEEEeCCEEEEEEeCCCCC-EE
Confidence            457788999999999997621   12222222   3455544   22  3489999999999999999999999884 44


Q ss_pred             EEEee
Q 018395          111 LFLGD  115 (356)
Q Consensus       111 l~i~~  115 (356)
                      +.+++
T Consensus       154 ~L~vD  158 (163)
T PF05118_consen  154 VLIVD  158 (163)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            43444

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=93.39  E-value=0.25  Score=46.51  Aligned_cols=46  Identities=17%  Similarity=0.273  Sum_probs=36.7

Q ss_pred             eCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395           55 CDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        55 h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~  105 (356)
                      .++-.+.|+++|++.+.+   ++  ..+.+++||++++|+|.+|.+....+
T Consensus        47 ~~~~~i~~~~~G~~~~~~---~~--~~~~~~~g~~i~i~p~~~h~~~~~~~   92 (290)
T PRK10572         47 MKGYILNLTIRGQGVIFN---GG--RAFVCRPGDLLLFPPGEIHHYGRHPD   92 (290)
T ss_pred             ccceEEEEEEeccEEEec---CC--eeEecCCCCEEEECCCCceeeccCCC
Confidence            355678899999999864   22  34899999999999999998766443

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=93.19  E-value=0.61  Score=45.18  Aligned_cols=62  Identities=15%  Similarity=0.180  Sum_probs=48.4

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEE
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWW  100 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~  100 (356)
                      ..+.+..+++++|.....-.-++..++.|++|+|++..-.    .....+++|||++||+.+.-.+
T Consensus       331 ~eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~~t----~~~~~v~rG~V~fI~a~~~i~~  392 (411)
T KOG2757|consen  331 EEFAVLETKVPTGESYKFPGVDGPSILLVLKGSGILKTDT----DSKILVNRGDVLFIPANHPIHL  392 (411)
T ss_pred             cceeEEEeecCCCceEEeecCCCceEEEEEecceEEecCC----CCceeeccCcEEEEcCCCCcee
Confidence            4678888999987655444558899999999999997521    2347999999999999987644

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=93.09  E-value=1.4  Score=35.18  Aligned_cols=68  Identities=18%  Similarity=0.254  Sum_probs=45.8

Q ss_pred             EEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          226 DLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       226 ~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      ..++|+||+-......+. -.-++||++|++.+   +  ++.   ..+.+|++.++..|-...+.+..++++++.+-
T Consensus         2 ~di~l~~g~~~~~~~~~~-~~~~iyv~~G~~~v---~--~~~---~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~   69 (104)
T PF05726_consen    2 LDIKLEPGASFTLPLPPG-HNAFIYVLEGSVEV---G--GEE---DPLEAGQLVVLEDGDEIELTAGEEGARFLLLG   69 (104)
T ss_dssp             EEEEE-TT-EEEEEEETT--EEEEEEEESEEEE---T--TTT---EEEETTEEEEE-SECEEEEEESSSSEEEEEEE
T ss_pred             EEEEECCCCEEEeecCCC-CEEEEEEEECcEEE---C--CCc---ceECCCcEEEECCCceEEEEECCCCcEEEEEE
Confidence            457889998875433333 45699999999754   2  222   46899999999977777767766888877765

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=93.03  E-value=0.58  Score=37.73  Aligned_cols=63  Identities=24%  Similarity=0.096  Sum_probs=46.9

Q ss_pred             CCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCC--cEEEEEecCC-CcEEEEEE
Q 018395           47 NGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG--VVTWWYNKED-TELVVLFL  113 (356)
Q Consensus        47 g~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G--~~H~~~N~g~-e~l~~l~i  113 (356)
                      +.-+.+|-| +-+-+.||++|+..-.  +..+..  ..|++||+-.+-+|  +.|.-.|..+ ++++.+-+
T Consensus        39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~~--~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl  105 (107)
T PF02678_consen   39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGNR--GVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL  105 (107)
T ss_dssp             TTEEEEEEECSEEEEEEEEESEEEEE--ETTSEE--EEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred             CCCCCCcCCCCceEEEEEecCEEEEE--CCCCCe--eEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence            566799999 7778899999988664  555533  68999999998876  8899999776 67776644

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>PF12852 Cupin_6: Cupin

Probab=92.84  E-value=0.43  Score=41.93  Aligned_cols=41  Identities=22%  Similarity=0.383  Sum_probs=33.3

Q ss_pred             eeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEe
Q 018395          246 LQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI  290 (356)
Q Consensus       246 ~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~  290 (356)
                      ..+.+|++|++++.+-+ .+..   -.|++||++++|+|..|.+-
T Consensus        36 ~~fh~V~~G~~~l~~~~-~~~~---~~L~~GDivllp~g~~H~l~   76 (186)
T PF12852_consen   36 ASFHVVLRGSCWLRVPG-GGEP---IRLEAGDIVLLPRGTAHVLS   76 (186)
T ss_pred             eEEEEEECCeEEEEEcC-CCCe---EEecCCCEEEEcCCCCeEeC
Confidence            57889999999999544 2222   47999999999999999984

>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]

Probab=92.40  E-value=0.17  Score=45.26  Aligned_cols=64  Identities=23%  Similarity=0.178  Sum_probs=52.3

Q ss_pred             EEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395           42 LALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT  106 (356)
Q Consensus        42 ~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e  106 (356)
                      +.=.|+....-|....+|++|=.+|...+.+++.+.. +...+++||++.+|+.++|.-+--.++
T Consensus        38 ~VGGPN~RkdyHieegeE~FyQ~KGdMvLKVie~g~~-rDivI~qGe~flLParVpHSPqRFant  101 (279)
T KOG3995|consen   38 FVGGPNTRKDYHIEEGEEVFYQLKGDMVLKVLEQGKH-RDVVIRQGEIFLLPARVPHSPQRFANT  101 (279)
T ss_pred             EecCCCcccccccCCcchhheeecCceEEeeeccCcc-eeeEEecCcEEEeccCCCCChhhhccc
Confidence            4446777777777799999999999999999887654 568999999999999999987654444

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=92.30  E-value=1  Score=34.55  Aligned_cols=67  Identities=12%  Similarity=0.034  Sum_probs=45.1

Q ss_pred             CCCeecccccccCCeeEEEEEeceEEEEEEccCCceEE-EEEecCCcEEEEcCCcEEEEeeCCCCeEE
Q 018395          232 GKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVL-ETTVKAGNLFIVPRFYVVSKIADPDGLAW  298 (356)
Q Consensus       232 ~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~-~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~  298 (356)
                      |-+++..|----+....+-|++|+.+....+++|...- ..-+.+|+..+||...+|.+..-+++++|
T Consensus        12 P~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f   79 (82)
T PF09313_consen   12 PAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRF   79 (82)
T ss_dssp             -GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EE
T ss_pred             cHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEE
Confidence            34456666533234556789999999999999864211 22688999999999999999776666655

; PDB: 3BB6_C 3M70_A 3DL3_I.

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=91.91  E-value=1.9  Score=42.86  Aligned_cols=59  Identities=14%  Similarity=0.156  Sum_probs=42.7

Q ss_pred             ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEE
Q 018395           36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWY  101 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~  101 (356)
                      .+.+.++.+.++....+  .....+++|++|++++..   ++  ....|++|+++++|++...+..
T Consensus       320 ~F~~~~~~l~~~~~~~~--~~~~~Illv~~G~~~i~~---~~--~~~~l~~G~~~fipa~~~~~~~  378 (389)
T PRK15131        320 DFAFSLHDLSDQPTTLS--QQSAAILFCVEGEAVLWK---GE--QQLTLKPGESAFIAANESPVTV  378 (389)
T ss_pred             CcEEEEEEECCceEEec--CCCcEEEEEEcceEEEEe---CC--eEEEECCCCEEEEeCCCccEEE
Confidence            46777777766522221  167799999999999853   22  2378999999999998876665

>TIGR02466 conserved hypothetical protein

Probab=91.87  E-value=0.57  Score=42.19  Aligned_cols=75  Identities=11%  Similarity=0.105  Sum_probs=47.3

Q ss_pred             EEEecCCCeecccccccCC--eeEEEEE--eceEEEEEEccCCce-----------------EEEEEecCCcEEEEcCCc
Q 018395          227 LVRLDGKAMCSPGFSCDSA--LQVTYIV--RGSGRAQIVGPDGKR-----------------VLETTVKAGNLFIVPRFY  285 (356)
Q Consensus       227 ~v~l~~g~~~~PH~h~~~A--~ei~~v~--~G~~~~~iv~~~g~~-----------------~~~~~l~~Gdv~vvP~g~  285 (356)
                      .+.+.+|+...+|.|++ +  +-+.||.  .+.+...+.+|....                 .+.-.-++||+++||.-+
T Consensus       100 ~ni~~~Gg~h~~H~Hp~-~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L  178 (201)
T TIGR02466       100 VNILPQGGTHSPHLHPG-SVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWL  178 (201)
T ss_pred             EEEcCCCCccCceECCC-ceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCC
Confidence            34568899999999998 6  2344444  244556666553211                 111244899999999999


Q ss_pred             EEEEe--eCCCCeEEEEEE
Q 018395          286 VVSKI--ADPDGLAWFSII  302 (356)
Q Consensus       286 ~h~~~--~~~~~~~~~~~~  302 (356)
                      .|...  .+++.-.-++|+
T Consensus       179 ~H~v~p~~~~~~RISiSFN  197 (201)
T TIGR02466       179 RHEVPPNESEEERISVSFN  197 (201)
T ss_pred             ceecCCCCCCCCEEEEEEe
Confidence            99983  344444444543

This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=91.75  E-value=0.23  Score=39.68  Aligned_cols=27  Identities=22%  Similarity=0.242  Sum_probs=21.2

Q ss_pred             EEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395           80 KVVAIKKGDGIALPFGVVTWWYNKEDT  106 (356)
Q Consensus        80 ~~~~l~~GDv~~iP~G~~H~~~N~g~e  106 (356)
                      .....++||.+++|+|+.|+..|.|+.
T Consensus        81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~  107 (114)
T PF02373_consen   81 YRFVQKPGEFVFIPPGAYHQVFNLGDN  107 (114)
T ss_dssp             EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred             ccceECCCCEEEECCCceEEEEeCCce
Confidence            357889999999999999999999864

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=91.60  E-value=0.28  Score=47.54  Aligned_cols=70  Identities=11%  Similarity=0.183  Sum_probs=48.8

Q ss_pred             EecCCCeecccccccCCeeEEEEEec--eEEEEEEccC----------------CceEEEEEecCCcEEEEcCCcEEEEe
Q 018395          229 RLDGKAMCSPGFSCDSALQVTYIVRG--SGRAQIVGPD----------------GKRVLETTVKAGNLFIVPRFYVVSKI  290 (356)
Q Consensus       229 ~l~~g~~~~PH~h~~~A~ei~~v~~G--~~~~~iv~~~----------------g~~~~~~~l~~Gdv~vvP~g~~h~~~  290 (356)
                      ...+||-+-|||-..    =+|+++|  +-|.++--..                +....+..+.+|||.|||+|++|+=+
T Consensus       125 ~a~~GGgvg~H~D~Y----DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gv  200 (383)
T COG2850         125 FAAPGGGVGPHFDQY----DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGV  200 (383)
T ss_pred             EecCCCccCccccch----heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCc
Confidence            568899999999765    3555665  5566665441                01233458999999999999999988


Q ss_pred             eCCCCeEEEEEE
Q 018395          291 ADPDGLAWFSII  302 (356)
Q Consensus       291 ~~~~~~~~~~~~  302 (356)
                      +-++.+.+-.-+
T Consensus       201 ae~dc~tySvG~  212 (383)
T COG2850         201 AEDDCMTYSVGF  212 (383)
T ss_pred             ccccccceeeec
Confidence            776655554334

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=91.41  E-value=0.5  Score=44.72  Aligned_cols=72  Identities=13%  Similarity=0.028  Sum_probs=54.4

Q ss_pred             cCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCC-cEEEEcCCcEEEEeeCCCCeE-EEEEE
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAG-NLFIVPRFYVVSKIADPDGLA-WFSII  302 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~G-dv~vvP~g~~h~~~~~~~~~~-~~~~~  302 (356)
                      -|++++.||-|.-+..+.+.|++|+..+-+.+++|.......+.+. +.-++|.+.+|.+...++++. ++.|+
T Consensus        19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~fy   92 (287)
T PRK12335         19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSFY   92 (287)
T ss_pred             chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEEE
Confidence            4678899999943489999999999999999999865444556664 455799999999977655544 34443

>PLN02658 homogentisate 1,2-dioxygenase

Probab=91.06  E-value=1.6  Score=43.55  Aligned_cols=214  Identities=11%  Similarity=-0.033  Sum_probs=109.5

Q ss_pred             cCCCcc--cCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeC-CCCC
Q 018395           45 EKNGFA--LPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDT-SKGH  120 (356)
Q Consensus        45 ~Pg~~~--~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~-~~~~  120 (356)
                      .++.-+  ..-++ ++++++|+.+|++.+.-.  -|+   .++++||+++||+|+.+.+.=. +.+.+.+.+-.. +++.
T Consensus       132 ~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~-~gp~rgyv~E~~g~~f~  205 (435)
T PLN02658        132 VANKSMDDCAFCNADGDFLIVPQQGRLWIKTE--LGK---LQVSPGEIVVIPRGFRFAVDLP-DGPSRGYVLEIFGGHFQ  205 (435)
T ss_pred             eCCCCCccceeecCCCCEEEEEEeCCEEEEEe--ccc---eEecCCCEEEecCccEEEEecC-CCCeeEEEEeecCCccc
Confidence            444433  23456 999999999999999642  232   6899999999999999887532 334444443332 3344


Q ss_pred             CCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcC----CCCC-----cccCCCceee
Q 018395          121 KAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKL----PEPK-----KEHRDGMAFN  191 (356)
Q Consensus       121 ~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~----~~p~-----~~~~~~~~~~  191 (356)
                      -|..=    ..|++.+.  -++|     |..+..-.+.. ......+++|.......    -.|-     ...-.+++||
T Consensus       206 LPdlG----piG~ngla--npRD-----F~~P~a~~ed~-~~~~~~vv~K~~g~l~~~~~~hsPfDVVaWhGn~~Pykyd  273 (435)
T PLN02658        206 LPDLG----PIGANGLA--NPRD-----FLHPVAWFEDG-SRPGYTIVQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYD  273 (435)
T ss_pred             CCCCC----cccccCCC--CHhH-----ccCCccccccc-cCCcEEEEEEeCCeeEEEecCCCCceEeeecCcccceEec
Confidence            44210    01222221  1222     22222111111 01111245554432210    1231     1222456777


Q ss_pred             ccCCCCC--c----ccCCCcEEEEeCCCCCCCccccCcee---EEEEecCCCeecccccccCCeeEEEEEeceEEEEEEc
Q 018395          192 CEEAPLD--V----DIKNGGRVVLLNTKNLPLVGEVGCGA---DLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG  262 (356)
Q Consensus       192 l~~~~~~--~----~~~~gG~~~~~~~~~~p~l~~l~~s~---~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~  262 (356)
                      |..=.|.  +    -.+.--.+.++ +.+-|.....+.-+   -+.... ++++.|.+|.|-.+|+++.+.|.-     +
T Consensus       274 l~~F~pi~svs~dH~dPSI~tvlta-ps~~pg~a~~dFVIF~PRw~vae-~TfrpPyyHrN~~sEfmgli~G~y-----~  346 (435)
T PLN02658        274 LSKFCPVNTVLFDHADPSINTVLTA-PTDKPGVALADFVIFPPRWLVAE-HTFRPPYYHRNCMSEFMGLIYGSY-----E  346 (435)
T ss_pred             hHHceeccccccccCCCCceEEEec-cCCCCCccccceEEECCcccccc-CccCCCCCccchhhhhhhhccccc-----c
Confidence            7743332  0    01111112222 22344433222111   111233 899999999998888888888762     1


Q ss_pred             cCCceEEEEEecCCcEEEEcCCcEEE
Q 018395          263 PDGKRVLETTVKAGNLFIVPRFYVVS  288 (356)
Q Consensus       263 ~~g~~~~~~~l~~Gdv~vvP~g~~h~  288 (356)
                      .   +  +..+.+|.+-.=|.+.+|=
T Consensus       347 a---k--~~gf~pGg~SLH~~~~pHG  367 (435)
T PLN02658        347 A---K--ADGFLPGGASLHSCMTPHG  367 (435)
T ss_pred             c---c--cCCccCCeeeecCCCCCCC
Confidence            1   1  1137899999999998874

>COG3542 Uncharacterized conserved protein [Function unknown]

Probab=91.00  E-value=8.1  Score=32.86  Aligned_cols=118  Identities=14%  Similarity=0.157  Sum_probs=67.8

Q ss_pred             CCCeEEEEeCCC---CCCCcc-cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCe-EEEEEEcCCCceEEE----EEcC
Q 018395           16 GNGGSYHAWCPN---ELPMLR-QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGS-GVAGIVLPEKEEKVV----AIKK   86 (356)
Q Consensus        16 ~~~G~i~~~~~~---~~p~l~-~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~-~~~~vv~~~~~~~~~----~l~~   86 (356)
                      .+||++++....   +.+.-. .......+.-|+++.+...|-..++|+.+...|. +.+.++. +|+..++    +++.
T Consensus        19 pEGG~y~eT~rs~e~~~~G~~~R~~sT~IYyLLe~~~~s~~HRv~a~eiwHf~ag~pl~~~l~~-dG~~~s~~LG~d~~~   97 (162)
T COG3542          19 PEGGFYRETFRSEEKDAAGGDVRNHSTAIYYLLEEDNISAWHRVTADEIWHFYAGAPLELHLSE-DGGAESFTLGPDLEK   97 (162)
T ss_pred             CCCCceeeeeccccccCCCccccceeEEEEEEecCCccchheecchhheEEEecCCceEEEEEe-CCCeEEEEecccccC
Confidence            378888765431   222221 2234566778899885444443688988888876 7777776 5544433    5567


Q ss_pred             CCE--EEeCCCcEE-EEEecCCCcEEEEEEeeCCCCCCCC-ceeEEeecccccccccC
Q 018395           87 GDG--IALPFGVVT-WWYNKEDTELVVLFLGDTSKGHKAG-EFTNFFLTGANGIFTGF  140 (356)
Q Consensus        87 GDv--~~iP~G~~H-~~~N~g~e~l~~l~i~~~~~~~~pg-~~~~f~lag~~s~l~~~  140 (356)
                      |.+  +++|+|... ...-.|++ -.++....     -|| +|++|-++-..+.|...
T Consensus        98 Ge~~Q~vVP~g~w~aS~~~~g~~-~tLVgCtV-----aPGFdF~~Fela~~~dlL~~~  149 (162)
T COG3542          98 GERPQYVVPAGTWWASAVSLGED-YTLVGCTV-----APGFDFEDFELAEPEDLLKWY  149 (162)
T ss_pred             CceeEEEEeCCcEEEEEEecCCC-ceEEEEEe-----cCCccchhccccCchhhhhcC
Confidence            765  689999433 33334433 23333221     255 46777777655555543

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=90.73  E-value=3.3  Score=36.36  Aligned_cols=80  Identities=6%  Similarity=-0.063  Sum_probs=54.6

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCc---e--E--EEEEecCCcEEEEcCCcEEEE-eeC-C
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK---R--V--LETTVKAGNLFIVPRFYVVSK-IAD-P  293 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~---~--~--~~~~l~~Gdv~vvP~g~~h~~-~~~-~  293 (356)
                      ..+-.+.-.||--.++|=|.. ++-++.|++|+.+-+.......   .  .  ....+..|.+.+++.+.+|-+ |++ +
T Consensus        75 ~el~ll~W~pGq~S~IHDH~~-s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~  153 (175)
T PF05995_consen   75 FELWLLCWPPGQRSPIHDHGG-SWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD  153 (175)
T ss_dssp             -EEEEEEE-TT-B--EEE-TT-SEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred             eEEEEEEeCCCCcCCCCCCCC-ceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence            556678899999999999998 8999999999998887766543   1  1  122467888889999999999 665 5


Q ss_pred             CCeEEEEEEc
Q 018395          294 DGLAWFSIIT  303 (356)
Q Consensus       294 ~~~~~~~~~~  303 (356)
                      +.+.-+=++.
T Consensus       154 ~~avSLHvYs  163 (175)
T PF05995_consen  154 EPAVSLHVYS  163 (175)
T ss_dssp             S-EEEEEEEE
T ss_pred             CCEEEEEEcC
Confidence            6666555553

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=90.71  E-value=1  Score=44.93  Aligned_cols=62  Identities=19%  Similarity=0.166  Sum_probs=39.4

Q ss_pred             CCe-ecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          233 KAM-CSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       233 g~~-~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      .+| ..--+|.+ +++++|+-+|+++++  +.-| .   -.+++||++|||+|..+.+.-. +++..+.+-
T Consensus       134 ~sM~~~~f~NaD-GD~Li~~q~G~l~l~--Te~G-~---L~v~pGd~~VIPRG~~~rv~l~-~p~rgyi~E  196 (424)
T PF04209_consen  134 ASMDDRAFRNAD-GDELIFPQQGSLRLE--TEFG-R---LDVRPGDYVVIPRGTRFRVELP-GPARGYIIE  196 (424)
T ss_dssp             S---SEEEEESS-EEEEEEEEES-EEEE--ETTE-E---EEE-TTEEEEE-TT--EEEE-S-SSEEEEEEE
T ss_pred             CCCCCcceEcCC-CCEEEEEEECCEEEE--ecCe-e---EEEcCCeEEEECCeeEEEEEeC-CCceEEEEE
Confidence            344 33445888 999999999998776  4444 2   2599999999999999887544 666666554

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=90.45  E-value=1.2  Score=42.11  Aligned_cols=65  Identities=11%  Similarity=0.107  Sum_probs=44.1

Q ss_pred             ceEEEEEEecCCCccc-----Ceee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395           36 NIGAAKLALEKNGFAL-----PHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~-----pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~  105 (356)
                      ++.+..+...|.....     .|.+ +.-.++++++|.+.+..   ++  ..+.+++||++++|++.+|.+.-.++
T Consensus        44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~---~g--~~~~l~~G~~~l~~~~~p~~~~~~~~  114 (302)
T PRK09685         44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ---DD--RQVQLAAGDITLIDASRPCSIYPQGL  114 (302)
T ss_pred             CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE---CC--eEEEEcCCCEEEEECCCCcEeecCCC
Confidence            4666777766653332     2222 33446678899998875   33  34899999999999999998765443

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=90.44  E-value=2  Score=41.56  Aligned_cols=224  Identities=10%  Similarity=0.034  Sum_probs=115.6

Q ss_pred             CceEEEEEEecCCCcc-cCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           35 GNIGAAKLALEKNGFA-LPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~-~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      .++.+..-.++. +|. ...++ +.++++|+.+|+.++.-.  -|   ..++++||..+||+|+...+.=.+.+ .+...
T Consensus       123 ~g~~i~~y~~n~-sm~~~~f~NADge~Livpq~G~l~l~te--~G---~l~v~pgeiavIPRG~~frve~~~~~-~rgy~  195 (427)
T COG3508         123 DGVAIHVYKVNE-SMTKRFFRNADGELLIVPQQGELRLKTE--LG---VLEVEPGEIAVIPRGTTFRVELKDGE-ARGYG  195 (427)
T ss_pred             CceEEEEEEccc-cchhhhhhcCCCCEEEEeecceEEEEEe--ec---eEEecCCcEEEeeCCceEEEEecCCc-eEEEE
Confidence            556555555544 444 45566 899999999999988532  22   37999999999999999988775544 33332


Q ss_pred             EeeCC-CCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcC----CCCC-----c
Q 018395          113 LGDTS-KGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKL----PEPK-----K  182 (356)
Q Consensus       113 i~~~~-~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~----~~p~-----~  182 (356)
                      +-... ...-|    +.=+-|++++..  |++     |.++..-.+.  ++++-.+++|--.+...    ..|-     .
T Consensus       196 ~En~ga~~~lp----e~G~ig~n~lan--pRD-----f~tPvar~ed--~e~~~qlvvK~~g~l~~~e~~hsPlDVVaWh  262 (427)
T COG3508         196 CENYGAKFRLP----ELGPIGANGLAN--PRD-----FKTPVARYED--SEGPTQLVVKTHGGLWAVELDHSPLDVVAWH  262 (427)
T ss_pred             Eeecccccccc----cccccccccccC--hhh-----ccCceeeecc--cCCCeEEEEEecCcEEEEecCCCCceeEeec
Confidence            22111 11111    111123323221  222     2222111111  22333466665443321    1232     1


Q ss_pred             ccCCCceeeccCCCCC-ccc---CCCc-EEEEeCCCCCCCccccCce--eEEEEecCCCeecccccccCCeeEEEEEece
Q 018395          183 EHRDGMAFNCEEAPLD-VDI---KNGG-RVVLLNTKNLPLVGEVGCG--ADLVRLDGKAMCSPGFSCDSALQVTYIVRGS  255 (356)
Q Consensus       183 ~~~~~~~~~l~~~~~~-~~~---~~gG-~~~~~~~~~~p~l~~l~~s--~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~  255 (356)
                      ..-.+++|+|..-+|. ..+   ++-. ..+.+.+.+-|.....+.=  --|....+++++.|.||-|-++|+...+.|.
T Consensus       263 Gnl~Pykydl~~f~pi~t~~~dhPdPSifTvltapsd~~g~~~cdFVifpprw~~~e~tfrppwyHrN~~sEfmgli~G~  342 (427)
T COG3508         263 GNLAPYKYDLRDFNPIGTISYDHPDPSIFTVLTAPSDTPGFANCDFVIFPPRWLVAEQTFRPPWYHRNDMSEFMGLISGQ  342 (427)
T ss_pred             CcccceEeeeeccccccceeccCCCCceEEEEecCCCCCCeeEEEEEecCchhcccccccCCCceecchHHHHHhHhhch
Confidence            2234567777754442 001   1111 1122222333443221100  0112346799999999999899999888885


Q ss_pred             EEEEEEccCCceEEEEEecCCcEEEEcCCcEEE
Q 018395          256 GRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVS  288 (356)
Q Consensus       256 ~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~  288 (356)
                      -..        +  +.-+.+|++-.=+-++.|=
T Consensus       343 yda--------k--~~GfvpGg~sLH~~m~~HG  365 (427)
T COG3508         343 YDA--------K--AEGFVPGGASLHNCMSAHG  365 (427)
T ss_pred             hhh--------h--ccCcCcCcceecccccccC
Confidence            311        1  1235677777777777774

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=90.19  E-value=1.5  Score=42.46  Aligned_cols=70  Identities=14%  Similarity=0.251  Sum_probs=51.4

Q ss_pred             ceeEEEEecCCCee-cccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEE
Q 018395          223 CGADLVRLDGKAMC-SPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS  300 (356)
Q Consensus       223 ~s~~~v~l~~g~~~-~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~  300 (356)
                      ..+-.+++..|... -|-.  + ...|..|++|++++.--+  +..   ..+++|||++||+.+...+.+.++.+..+-
T Consensus       333 F~v~~~~v~~g~~~~~~~~--~-~~SIllv~~G~g~l~~~t--~~~---~~v~rG~V~fI~a~~~i~~~~~sd~~~~yr  403 (411)
T KOG2757|consen  333 FAVLETKVPTGESYKFPGV--D-GPSILLVLKGSGILKTDT--DSK---ILVNRGDVLFIPANHPIHLSSSSDPFLGYR  403 (411)
T ss_pred             eeEEEeecCCCceEEeecC--C-CceEEEEEecceEEecCC--CCc---eeeccCcEEEEcCCCCceeeccCcceeeee
Confidence            66777888887663 3444  2 457999999999887553  222   369999999999999988777777655443

>KOG3706 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.16  E-value=0.21  Score=49.80  Aligned_cols=62  Identities=19%  Similarity=0.225  Sum_probs=47.4

Q ss_pred             EEEecC-CC-cccCeeeCCCEEEEEEeCeEEEEEEcCCC-------------------c-eEEEEEcCCCEEEeCCCcEE
Q 018395           41 KLALEK-NG-FALPHYCDSARVAYVLQGSGVAGIVLPEK-------------------E-EKVVAIKKGDGIALPFGVVT   98 (356)
Q Consensus        41 ~~~l~P-g~-~~~pH~h~a~e~~yVl~G~~~~~vv~~~~-------------------~-~~~~~l~~GDv~~iP~G~~H   98 (356)
                      -+.|.| |+ -+.|||-+-+.++.=++|+=...+..|..                   + ....-|++||++|||.|++|
T Consensus       320 NvYLTPagSqGfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IH  399 (629)
T KOG3706|consen  320 NVYLTPAGSQGFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIH  399 (629)
T ss_pred             ceeecCCCCCCCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCccee
Confidence            344444 43 35899998888999999999998888752                   0 12357999999999999999


Q ss_pred             EEEe
Q 018395           99 WWYN  102 (356)
Q Consensus        99 ~~~N  102 (356)
                      ....
T Consensus       400 QA~t  403 (629)
T KOG3706|consen  400 QADT  403 (629)
T ss_pred             eccc
Confidence            8654

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=90.10  E-value=6.4  Score=30.93  Aligned_cols=69  Identities=12%  Similarity=0.033  Sum_probs=47.0

Q ss_pred             eEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           37 IGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        37 ~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      -......|.||-   -++. .+.|+.-|++|...+.+  |+..+. ...++|+.|.+|++...-+.-.  +....+|-
T Consensus        23 ~~~TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~l--pg~~ew-~~~~aGesF~VpanssF~v~v~--~~~~Y~C~   92 (94)
T PF06865_consen   23 SKKTLGVMLPGE---YTFGTSAPERMEVVSGELEVKL--PGEDEW-QTYSAGESFEVPANSSFDVKVK--EPTAYLCS   92 (94)
T ss_dssp             EEEEEEEE-SEC---EEEEESS-EEEEEEESEEEEEE--TT-SS--EEEETT-EEEE-TTEEEEEEES--S-EEEEEE
T ss_pred             CcceEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEc--CCCccc-EEeCCCCeEEECCCCeEEEEEC--cceeeEEE
Confidence            344566777776   3455 89999999999999986  333223 6899999999999999988765  34666664

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=89.87  E-value=2.2  Score=38.76  Aligned_cols=63  Identities=16%  Similarity=0.089  Sum_probs=48.1

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEE-EEEcCCCEEEeCCCcE
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKV-VAIKKGDGIALPFGVV   97 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~-~~l~~GDv~~iP~G~~   97 (356)
                      ....+...++++|..+...-...+.+++|++|...+...+++|++.. .-+.+||++-...+.+
T Consensus        34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~   97 (230)
T PRK09391         34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGST   97 (230)
T ss_pred             ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCc
Confidence            45667788999988665554478889999999999998888877653 4558999887665543

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=89.59  E-value=2.9  Score=41.81  Aligned_cols=73  Identities=15%  Similarity=0.090  Sum_probs=50.3

Q ss_pred             CceeEEEEecCCCe-ecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEE
Q 018395          222 GCGADLVRLDGKAM-CSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~-~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~  300 (356)
                      |+++.....+. +| ..--.|.+ +.+++|+-+|+++++  ++-|.    -++++||+.|||+|..+.+.-.+.++..+.
T Consensus       132 G~ai~~y~~n~-sM~~~~f~NaD-GD~Livpq~G~l~i~--TEfG~----L~v~pgei~VIPRG~~frv~l~~gp~rgyi  203 (438)
T PRK05341        132 GMAIHLYAANR-SMQDRYFYNAD-GELLIVPQQGRLRLA--TELGV----LDVEPGEIAVIPRGVKFRVELPDGPARGYV  203 (438)
T ss_pred             ccEEEEEeCCC-CcccceeecCC-CCEEEEEEeCCEEEE--Eeccc----eEecCCCEEEEcCccEEEEecCCCCeeEEE
Confidence            44444433333 55 45566888 999999999999776  33442    268999999999999988764445555554


Q ss_pred             EE
Q 018395          301 II  302 (356)
Q Consensus       301 ~~  302 (356)
                      +-
T Consensus       204 ~E  205 (438)
T PRK05341        204 CE  205 (438)
T ss_pred             EE
Confidence            43

>PLN02288 mannose-6-phosphate isomerase

Probab=89.58  E-value=0.97  Score=44.90  Aligned_cols=60  Identities=20%  Similarity=0.246  Sum_probs=43.2

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcE
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVV   97 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~   97 (356)
                      ..+.+.++++.++......-.++.++++|++|++++..   ++...+..|++|+++++|++..
T Consensus       332 ~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~---~~~~~~~~l~~G~~~fv~a~~~  391 (394)
T PLN02288        332 DEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLST---GSSEDGTAAKRGDVFFVPAGTE  391 (394)
T ss_pred             cceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEec---CCccceEEEeceeEEEEeCCCc
Confidence            46788888998876422222478899999999999853   2222235799999999999754

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=89.25  E-value=0.71  Score=44.87  Aligned_cols=72  Identities=17%  Similarity=0.093  Sum_probs=47.1

Q ss_pred             CCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCC-----------------ceEEEEEcCCCEEEe
Q 018395           30 PMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEK-----------------EEKVVAIKKGDGIAL   92 (356)
Q Consensus        30 p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~-----------------~~~~~~l~~GDv~~i   92 (356)
                      |..+..++  ..--..||+-+.|||-..+-+++=..|+=+-.+-...+                 -.....+++||++||
T Consensus       114 P~wr~ddi--MIS~a~~GGgvg~H~D~YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYi  191 (383)
T COG2850         114 PDWRIDDI--MISFAAPGGGVGPHFDQYDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYI  191 (383)
T ss_pred             ccccccce--EEEEecCCCccCccccchheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeec
Confidence            44444444  23378899999999976655544444555555432210                 012357899999999


Q ss_pred             CCCcEEEEEec
Q 018395           93 PFGVVTWWYNK  103 (356)
Q Consensus        93 P~G~~H~~~N~  103 (356)
                      |+|++|+-+..
T Consensus       192 Pp~~~H~gvae  202 (383)
T COG2850         192 PPGFPHYGVAE  202 (383)
T ss_pred             CCCCCcCCccc
Confidence            99999998876

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=88.67  E-value=5.5  Score=30.48  Aligned_cols=61  Identities=18%  Similarity=-0.008  Sum_probs=43.7

Q ss_pred             CCCcccCeeeCCCEE--EEEEeCeEEEEEEcCCCc--eEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395           46 KNGFALPHYCDSARV--AYVLQGSGVAGIVLPEKE--EKVVAIKKGDGIALPFGVVTWWYNKEDT  106 (356)
Q Consensus        46 Pg~~~~pH~h~a~e~--~yVl~G~~~~~vv~~~~~--~~~~~l~~GDv~~iP~G~~H~~~N~g~e  106 (356)
                      |-++...|...+..|  +-|++|+..+...++++.  ....-+++|+..+|++...|.+.-.++.
T Consensus        12 P~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D   76 (82)
T PF09313_consen   12 PAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDD   76 (82)
T ss_dssp             -GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT
T ss_pred             cHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCC
Confidence            445667776655554  569999999999887643  2346889999999999999999876653

; PDB: 3BB6_C 3M70_A 3DL3_I.

>PF13464 DUF4115: Domain of unknown function (DUF4115)

Probab=88.59  E-value=3.2  Score=31.00  Aligned_cols=53  Identities=17%  Similarity=0.162  Sum_probs=44.6

Q ss_pred             EEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          250 YIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       250 ~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      +-..|...++|.+.+|+.+++..+++||..-++..-+..+..|+-+..-+.++
T Consensus         3 l~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i~iGna~~v~v~~n   55 (77)
T PF13464_consen    3 LTATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRIRIGNAGAVEVTVN   55 (77)
T ss_pred             EEEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEEEEeCCCcEEEEEC
Confidence            34568999999999999999999999999999888888888887766666654

>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A

Probab=88.58  E-value=2  Score=33.86  Aligned_cols=65  Identities=26%  Similarity=0.290  Sum_probs=34.5

Q ss_pred             EEEecCCCcccCeee-CC--CEEEEEE--eCeEEEEEEcCCC------------------ceEEEEEcCCCEEEeCCCcE
Q 018395           41 KLALEKNGFALPHYC-DS--ARVAYVL--QGSGVAGIVLPEK------------------EEKVVAIKKGDGIALPFGVV   97 (356)
Q Consensus        41 ~~~l~Pg~~~~pH~h-~a--~e~~yVl--~G~~~~~vv~~~~------------------~~~~~~l~~GDv~~iP~G~~   97 (356)
                      ....++|+...+|.| ++  .-++||-  ++.+.+.+.++..                  .....+.++||+++||+-..
T Consensus         4 ~ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~   83 (101)
T PF13759_consen    4 ANIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLW   83 (101)
T ss_dssp             EEEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSE
T ss_pred             EEEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCE
Confidence            345678999999999 44  3455654  3444455555431                  23456889999999999999


Q ss_pred             EEEEe-cCC
Q 018395           98 TWWYN-KED  105 (356)
Q Consensus        98 H~~~N-~g~  105 (356)
                      |+..- .++
T Consensus        84 H~v~p~~~~   92 (101)
T PF13759_consen   84 HGVPPNNSD   92 (101)
T ss_dssp             EEE----SS
T ss_pred             EeccCcCCC
Confidence            99864 444

>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine

Probab=88.44  E-value=2.8  Score=37.70  Aligned_cols=97  Identities=10%  Similarity=0.052  Sum_probs=67.3

Q ss_pred             cccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCC----------ceEEEE------E-cCCC-EEEe
Q 018395           32 LRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEK----------EEKVVA------I-KKGD-GIAL   92 (356)
Q Consensus        32 l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~----------~~~~~~------l-~~GD-v~~i   92 (356)
                      ..+..+++..+-|+||+.+++|=| .-.-+.-||.|+..+.-++--.          .....+      + .+++ .+..
T Consensus        39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~  118 (200)
T PF07847_consen   39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY  118 (200)
T ss_pred             EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence            355688999999999999999999 7777777999999998766221          000111      2 2223 5556


Q ss_pred             CCC--cEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEe
Q 018395           93 PFG--VVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFF  129 (356)
Q Consensus        93 P~G--~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~  129 (356)
                      |..  -.|++.+.+ +++.|+-|+.+.-..+.|+--.||
T Consensus       119 P~~ggNiH~f~a~~-~p~AflDIL~PPY~~~~gR~C~YY  156 (200)
T PF07847_consen  119 PTSGGNIHEFTALT-GPCAFLDILAPPYDPDDGRDCTYY  156 (200)
T ss_pred             cCCCCeeEEEEeCC-CCeEEEEEccCCCCCCCCCCcEEE
Confidence            664  899999987 789999888754223455555555

Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process

>PRK10579 hypothetical protein; Provisional

Probab=88.39  E-value=6.4  Score=30.87  Aligned_cols=65  Identities=11%  Similarity=0.045  Sum_probs=48.2

Q ss_pred             EEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           40 AKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        40 ~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      ....+.||.   -++. .+.|+.-|++|++.+.+  |+..+. ...++|+.|.+|++...-+....  ....+|
T Consensus        26 TlGVm~pGe---y~F~T~~~E~MeivsG~l~V~L--pg~~ew-~~~~aG~sF~VpanssF~l~v~~--~t~Y~C   91 (94)
T PRK10579         26 SVGVMAEGE---YTFSTAEPEEMTVISGALNVLL--PGATDW-QVYEAGEVFNVPGHSEFHLQVAE--PTSYLC   91 (94)
T ss_pred             EEEEEeeeE---EEEcCCCcEEEEEEeeEEEEEC--CCCccc-EEeCCCCEEEECCCCeEEEEECc--ceeeEE
Confidence            345566766   3444 89999999999999976  333223 69999999999999998887643  355665

>COG1741 Pirin-related protein [General function prediction only]

Probab=88.37  E-value=1.6  Score=41.27  Aligned_cols=71  Identities=24%  Similarity=0.095  Sum_probs=52.6

Q ss_pred             EEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCC--cEEEEEec--CCCcEEEEEEee
Q 018395           41 KLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG--VVTWWYNK--EDTELVVLFLGD  115 (356)
Q Consensus        41 ~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G--~~H~~~N~--g~e~l~~l~i~~  115 (356)
                      ...+.||.-+.||-| .-+-+-||++|+.+-.  +..|..  ..+++||+-.+=+|  +.|.-.|.  .+.++..+-+..
T Consensus        48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn~--~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv  123 (276)
T COG1741          48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGNK--GVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWV  123 (276)
T ss_pred             cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCce--eeecccceeEEcCCCceeecccCCccCCCccceeeeec
Confidence            446899999999999 7777899999998775  444432  68999999998887  67877775  333455554443

>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length

Probab=87.44  E-value=7.4  Score=35.39  Aligned_cols=78  Identities=13%  Similarity=0.232  Sum_probs=45.9

Q ss_pred             ceEEEEEEecCCCcccCeee-CCCEEEEEE-eCeEEEEEEcCC--C--------------ce------EEEEEcCCCEEE
Q 018395           36 NIGAAKLALEKNGFALPHYC-DSARVAYVL-QGSGVAGIVLPE--K--------------EE------KVVAIKKGDGIA   91 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl-~G~~~~~vv~~~--~--------------~~------~~~~l~~GDv~~   91 (356)
                      -++=..+.+.+|...+.|+| .-.|=++.- -|+..+.+...+  +              ..      ....|.||+.+-
T Consensus        86 ~YAEKim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiT  165 (225)
T PF07385_consen   86 PYAEKIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESIT  165 (225)
T ss_dssp             -EEEEEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEE
T ss_pred             cchhhheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEe
Confidence            35556788999999999999 555544444 357777776643  1              11      236899999999


Q ss_pred             eCCCcEEEEEecCCCcEEEEEEee
Q 018395           92 LPFGVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        92 iP~G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      +++|.-|+++..+..  +++.=..
T Consensus       166 L~Pg~yH~Fw~e~g~--vLigEVS  187 (225)
T PF07385_consen  166 LPPGIYHWFWGEGGD--VLIGEVS  187 (225)
T ss_dssp             E-TTEEEEEEE-TTS--EEEEEEE
T ss_pred             eCCCCeeeEEecCCC--EEEEeee
Confidence            999999999986544  4444333

The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=87.41  E-value=3.5  Score=39.43  Aligned_cols=61  Identities=21%  Similarity=0.206  Sum_probs=43.7

Q ss_pred             cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWY  101 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~  101 (356)
                      ...+.+.++++....  ...-.+...+++|++|++++..   ++  ....|++|+++++|++...+..
T Consensus       232 ~~~F~~~~~~~~~~~--~~~~~~~~~il~v~~G~~~i~~---~~--~~~~l~~G~~~~ipa~~~~~~i  292 (302)
T TIGR00218       232 TEYFSVYKWDISGKA--EFIQQQSALILSVLEGSGRIKS---GG--KTLPLKKGESFFIPAHLGPFTI  292 (302)
T ss_pred             CCCeEEEEEEeCCce--eeccCCCcEEEEEEcceEEEEE---CC--EEEEEecccEEEEccCCccEEE
Confidence            346777888876542  1111267889999999999853   22  3478999999999999866555

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes

Probab=86.87  E-value=14  Score=31.14  Aligned_cols=97  Identities=12%  Similarity=0.086  Sum_probs=59.6

Q ss_pred             CCcEEEEeCCCCCCCcc------ccCceeEEEEecCCCeecccccccCCeeEEEEEec-eEEEEEEccCCceEEEE----
Q 018395          203 NGGRVVLLNTKNLPLVG------EVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRG-SGRAQIVGPDGKRVLET----  271 (356)
Q Consensus       203 ~gG~~~~~~~~~~p~l~------~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G-~~~~~iv~~~g~~~~~~----  271 (356)
                      .||+.++..........      ...++.-..-|.++.+.  |||...++|+-+...| ..++-+++|+|+-. ..    
T Consensus        15 EGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S--~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~-~~~LG~   91 (139)
T PF06172_consen   15 EGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFS--AWHRVDSDEIWHFHAGDPLELHLIDPDGSYE-TVVLGP   91 (139)
T ss_dssp             TSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEE--EEEEESSEEEEEEEEES-EEEEEECTTSTEE-EEEESS
T ss_pred             CCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCC--ccEEcCCCEEEEEEcCCCEEEEEEcCCCCeE-EEEECC
Confidence            46666555544332221      12345555568888887  6666338999999998 78999999998542 22    


Q ss_pred             EecCCc--EEEEcCCcEEEEe-eCCCCeEEEEEE
Q 018395          272 TVKAGN--LFIVPRFYVVSKI-ADPDGLAWFSII  302 (356)
Q Consensus       272 ~l~~Gd--v~vvP~g~~h~~~-~~~~~~~~~~~~  302 (356)
                      ++.+|+  .++||+|.+..-. .+..+..+++..
T Consensus        92 d~~~g~~~q~vVp~G~W~aa~l~~~~~y~Lvsc~  125 (139)
T PF06172_consen   92 DLAAGERPQVVVPAGTWQAAELEPEGDYSLVSCT  125 (139)
T ss_dssp             TTCTTEBSEEEE-TTSEEEEEECESSSEEEEEEE
T ss_pred             CCCCCceEEEEECCCEEEEccccCCCCEEEEEEE
Confidence            334554  5799999998763 344566666554

; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.

>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria

Probab=86.68  E-value=2.8  Score=30.32  Aligned_cols=57  Identities=14%  Similarity=-0.005  Sum_probs=42.0

Q ss_pred             EEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEe
Q 018395           42 LALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYN  102 (356)
Q Consensus        42 ~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N  102 (356)
                      .+|.||.....+-..+. .+-|.+|+.-++.   ++....+-|++||.+.+++|.--++..
T Consensus         2 ~~L~~g~~~~lr~~~~~-~l~v~~G~vWlT~---~g~~~D~~L~~G~~l~l~~g~~vvl~a   58 (63)
T PF11142_consen    2 FELAPGETLSLRAAAGQ-RLRVESGRVWLTR---EGDPDDYWLQAGDSLRLRRGGRVVLSA   58 (63)
T ss_pred             EEeCCCceEEeEcCCCc-EEEEccccEEEEC---CCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence            46777776665544443 4889999988875   333456899999999999998877654

>PLN02658 homogentisate 1,2-dioxygenase

Probab=86.26  E-value=5.5  Score=39.86  Aligned_cols=72  Identities=14%  Similarity=0.124  Sum_probs=49.2

Q ss_pred             CceeEEEEecCCCe-ecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEE
Q 018395          222 GCGADLVRLDGKAM-CSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~-~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~  300 (356)
                      ||++.....+. +| ..--.|.+ +.+++|+-+|+++++  +.-|.    -.+++||+.|||+|..+.+.-.+.++..+.
T Consensus       125 G~ai~iy~~n~-sM~~~~f~NaD-GD~Livpq~G~l~i~--TEfG~----L~v~pgei~VIPRG~~frv~l~~gp~rgyv  196 (435)
T PLN02658        125 GYAIHMYVANK-SMDDCAFCNAD-GDFLIVPQQGRLWIK--TELGK----LQVSPGEIVVIPRGFRFAVDLPDGPSRGYV  196 (435)
T ss_pred             CcEEEEEeCCC-CCccceeecCC-CCEEEEEEeCCEEEE--Eeccc----eEecCCCEEEecCccEEEEecCCCCeeEEE
Confidence            44444333333 45 34467888 999999999998776  33442    268999999999999988754444555554


Q ss_pred             E
Q 018395          301 I  301 (356)
Q Consensus       301 ~  301 (356)
                      +
T Consensus       197 ~  197 (435)
T PLN02658        197 L  197 (435)
T ss_pred             E
Confidence            4

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=85.24  E-value=6.4  Score=39.32  Aligned_cols=71  Identities=11%  Similarity=0.084  Sum_probs=48.5

Q ss_pred             CceeEEEEecCCCe-ecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEE
Q 018395          222 GCGADLVRLDGKAM-CSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~-~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~  300 (356)
                      |+++.....+. +| ..--.|.+ +.+++|+-+|+++++  ++-|.    -.+++||+.|||+|..+.+.-. +++..+.
T Consensus       126 G~ai~iy~~~~-sM~~~~f~NaD-GD~Livpq~G~l~i~--TEfG~----L~v~pgei~VIPRG~~frv~l~-gp~rgyi  196 (429)
T TIGR01015       126 GLAIHIYLCNA-SMENRAFYNAD-GDFLIVPQQGALLIT--TEFGR----LLVEPNEICVIPRGVRFRVTVL-EPARGYI  196 (429)
T ss_pred             CceEEEEeCCC-CcccceeeccC-CCEEEEEEeCcEEEE--Eeccc----eEecCCCEEEecCccEEEEeeC-CCceEEE
Confidence            44444333333 56 45566888 999999999998766  33442    2699999999999999887542 3555544


Q ss_pred             E
Q 018395          301 I  301 (356)
Q Consensus       301 ~  301 (356)
                      +
T Consensus       197 ~  197 (429)
T TIGR01015       197 C  197 (429)
T ss_pred             E
Confidence            4

Missing in human disease alkaptonuria.

>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]

Probab=84.40  E-value=12  Score=34.38  Aligned_cols=88  Identities=17%  Similarity=0.124  Sum_probs=64.4

Q ss_pred             CCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCC-----CceEEEEEcCCCEE
Q 018395           16 GNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPE-----KEEKVVAIKKGDGI   90 (356)
Q Consensus        16 ~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~-----~~~~~~~l~~GDv~   90 (356)
                      ...|.+..+++.+ +.+.  -+++...+|.+|.....-.-+-+.++++++|++.+..-...     .+...++=++=|++
T Consensus        11 ~~~g~v~~vtp~s-agw~--YVGF~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~v   87 (270)
T COG3718          11 AGVGLVQDVTPES-AGWE--YVGFRLLRLAAGESATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSV   87 (270)
T ss_pred             CCCcceEEecCCC-CCce--eEEEEEEEccCCCcccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeE
Confidence            3567888777654 3343  46778899999998777666777788899999999753211     23344566678999


Q ss_pred             EeCCCcEEEEEecCCC
Q 018395           91 ALPFGVVTWWYNKEDT  106 (356)
Q Consensus        91 ~iP~G~~H~~~N~g~e  106 (356)
                      |+|.|....+...++-
T Consensus        88 Yvp~g~~~~vtA~t~~  103 (270)
T COG3718          88 YVPAGSAFSVTATTDL  103 (270)
T ss_pred             EecCCceEEEEeecce
Confidence            9999999999887654

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=83.73  E-value=10  Score=34.35  Aligned_cols=79  Identities=16%  Similarity=-0.019  Sum_probs=55.3

Q ss_pred             cCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEE
Q 018395          221 VGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWF  299 (356)
Q Consensus       221 l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~  299 (356)
                      ++..+....+.+|-+.--.=. . +..+.+|++|.+++...+++|+..+-.-+.+||+|=...+.++...+ -.++++++
T Consensus        34 ~~~~~~~~~~~kge~l~~~Gd-~-~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~  111 (230)
T PRK09391         34 AGLVASEFSYKKGEEIYGEGE-P-ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVR  111 (230)
T ss_pred             ccceeeeEEECCCCEEECCCC-C-CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEE
Confidence            356677888999977643322 2 56799999999999999999987666778999988665554433222 23455655


Q ss_pred             EE
Q 018395          300 SI  301 (356)
Q Consensus       300 ~~  301 (356)
                      .+
T Consensus       112 ~i  113 (230)
T PRK09391        112 LI  113 (230)
T ss_pred             EE
Confidence            55

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=83.61  E-value=4.9  Score=35.30  Aligned_cols=56  Identities=18%  Similarity=0.077  Sum_probs=41.2

Q ss_pred             eEEEEecCCCeecccccc-cCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEE
Q 018395          225 ADLVRLDGKAMCSPGFSC-DSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIV  281 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~-~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vv  281 (356)
                      +..+++.+|.+.---=-+ . ++.+.+|++|.+++...+++|+..+-.-+.+||+|=-
T Consensus         6 ~~~~~~~kg~~l~~~Gd~~~-~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~   62 (202)
T PRK13918          6 VDTVTYRPGAVILYPGVPGP-SDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGE   62 (202)
T ss_pred             cceeEecCCCEEEcCCCCCC-CCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeech
Confidence            345567777665211111 2 4679999999999999999998877778899998744

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=83.43  E-value=6.1  Score=29.18  Aligned_cols=49  Identities=14%  Similarity=0.203  Sum_probs=35.7

Q ss_pred             EecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395          229 RLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF  279 (356)
Q Consensus       229 ~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~  279 (356)
                      ++.+|...-..-. . ...+.||++|.+++...+.+++......+.+||++
T Consensus         3 ~~~~g~~i~~~g~-~-~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~   51 (91)
T PF00027_consen    3 TYKKGEVIYRQGD-P-CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF   51 (91)
T ss_dssp             EESTTEEEEETTS-B-ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred             EECCCCEEEeCCC-c-CCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence            3455554422221 2 45899999999999999999876666788899887

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>COG3806 ChrR Transcriptional activator [Transcription]

Probab=82.94  E-value=6  Score=35.31  Aligned_cols=90  Identities=18%  Similarity=-0.045  Sum_probs=63.7

Q ss_pred             ceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEE
Q 018395           12 QVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIA   91 (356)
Q Consensus        12 ~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~   91 (356)
                      -++...||+++.+...     .+-+.+++++.+.||..++-|.|-+-|...|++|...    +++     .++..||...
T Consensus       108 ~~W~~~G~rv~~v~l~-----~dds~~V~llki~~g~s~P~HtH~G~E~t~vl~G~~s----de~-----G~y~vgD~~~  173 (216)
T COG3806         108 WRWLGPGGRVEPVRLP-----TDDSRRVALLKIEPGRSFPDHTHVGIERTAVLEGAFS----DEN-----GEYLVGDFTL  173 (216)
T ss_pred             eeeecCCcceeecccC-----CCCCceeEEEEeccCcccccccccceEEEEEEeeccc----cCC-----CccccCceee
Confidence            3444555655544331     2346788999999999999999999999999998643    233     3677888888


Q ss_pred             eCCCcEEEEEecCCCcEEEEEEee
Q 018395           92 LPFGVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        92 iP~G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      -+.+.-|.-.-..+.++..++..+
T Consensus       174 ~d~~v~H~piv~~~~eClcl~al~  197 (216)
T COG3806         174 ADGTVQHSPIVLPPGECLCLAALD  197 (216)
T ss_pred             cCCccccccccCCCCCceEEEEcC
Confidence            888888875544555566666544

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=82.79  E-value=3.3  Score=30.70  Aligned_cols=49  Identities=12%  Similarity=0.155  Sum_probs=34.1

Q ss_pred             EecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceE-EEEEcCCCEEE
Q 018395           43 ALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEK-VVAIKKGDGIA   91 (356)
Q Consensus        43 ~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~-~~~l~~GDv~~   91 (356)
                      ++++|..+...-...+.++||++|...+...+.+++.. ...+.+||++-
T Consensus         3 ~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g   52 (91)
T PF00027_consen    3 TYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFG   52 (91)
T ss_dssp             EESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEES
T ss_pred             EECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeecccc
Confidence            44555544322226789999999999999888776543 56778888763

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>TIGR02466 conserved hypothetical protein

Probab=82.21  E-value=7.3  Score=35.04  Aligned_cols=69  Identities=19%  Similarity=0.126  Sum_probs=46.7

Q ss_pred             EEEEEEecCCCcccCeee-CC--CEEEEEE--eCeEEEEEEcCCCc------------------eEEEEEcCCCEEEeCC
Q 018395           38 GAAKLALEKNGFALPHYC-DS--ARVAYVL--QGSGVAGIVLPEKE------------------EKVVAIKKGDGIALPF   94 (356)
Q Consensus        38 ~~~~~~l~Pg~~~~pH~h-~a--~e~~yVl--~G~~~~~vv~~~~~------------------~~~~~l~~GDv~~iP~   94 (356)
                      .+-...+++|+....|.| ++  .-++||.  .+.+.+.+.+|...                  .....-++||+++||.
T Consensus        97 ~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS  176 (201)
T TIGR02466        97 KAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFES  176 (201)
T ss_pred             eEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECC
Confidence            345667889999999999 54  4567766  34455555544210                  1123558999999999


Q ss_pred             CcEEEEE-ecCCC
Q 018395           95 GVVTWWY-NKEDT  106 (356)
Q Consensus        95 G~~H~~~-N~g~e  106 (356)
                      -..|... |.+++
T Consensus       177 ~L~H~v~p~~~~~  189 (201)
T TIGR02466       177 WLRHEVPPNESEE  189 (201)
T ss_pred             CCceecCCCCCCC
Confidence            9999986 44444

This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=81.99  E-value=3.7  Score=38.51  Aligned_cols=41  Identities=22%  Similarity=0.349  Sum_probs=32.9

Q ss_pred             CeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395          245 ALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA  291 (356)
Q Consensus       245 A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~  291 (356)
                      +..+.|+++|++.+. ++  + +  ...+++||++++|+|.+|....
T Consensus        49 ~~~i~~~~~G~~~~~-~~--~-~--~~~~~~g~~i~i~p~~~h~~~~   89 (290)
T PRK10572         49 GYILNLTIRGQGVIF-NG--G-R--AFVCRPGDLLLFPPGEIHHYGR   89 (290)
T ss_pred             ceEEEEEEeccEEEe-cC--C-e--eEecCCCCEEEECCCCceeecc
Confidence            778999999999875 22  2 2  2579999999999999998643

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=81.96  E-value=12  Score=31.51  Aligned_cols=42  Identities=19%  Similarity=0.105  Sum_probs=31.1

Q ss_pred             EEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395           59 RVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        59 e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~  105 (356)
                      -+.+.++|.+.+..   ++  ....+.+||+++++++.++.+.-.++
T Consensus        57 ~l~~~~~G~~~~~~---~g--~~~~~~pg~~~l~d~~~~~~~~~~~~   98 (172)
T PF14525_consen   57 LLVLPLSGSARIEQ---GG--REVELAPGDVVLLDPGQPYRLEFSAG   98 (172)
T ss_pred             EEEEEccCCEEEEE---CC--EEEEEcCCeEEEEcCCCCEEEEECCC
Confidence            45556677777664   33  34899999999999999988776543

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=80.92  E-value=5.5  Score=37.60  Aligned_cols=58  Identities=12%  Similarity=-0.093  Sum_probs=45.3

Q ss_pred             CCCcccCeee--CCCEEEEEEeCeEEEEEEcCCCceE-EEEEcC-CCEEEeCCCcEEEEEec
Q 018395           46 KNGFALPHYC--DSARVAYVLQGSGVAGIVLPEKEEK-VVAIKK-GDGIALPFGVVTWWYNK  103 (356)
Q Consensus        46 Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~~~~-~~~l~~-GDv~~iP~G~~H~~~N~  103 (356)
                      |+++..||-|  ...+.+.|++|+..+.+.++++.+. ...+.+ ++.-++|++..|.+.-.
T Consensus        20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~   81 (287)
T PRK12335         20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAA   81 (287)
T ss_pred             hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEc
Confidence            7788999988  6678999999999998887776432 244544 45667999999999875

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=80.81  E-value=5.3  Score=35.08  Aligned_cols=54  Identities=13%  Similarity=-0.015  Sum_probs=38.4

Q ss_pred             EEEEecCCCcccCeee--CCCEEEEEEeCeEEEEEEcCCCceEE-EEEcCCCEEEeC
Q 018395           40 AKLALEKNGFALPHYC--DSARVAYVLQGSGVAGIVLPEKEEKV-VAIKKGDGIALP   93 (356)
Q Consensus        40 ~~~~l~Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~~~~~-~~l~~GDv~~iP   93 (356)
                      ...++++|.....---  .++.+++|++|..++...+++|++.. .-+.+||++-.+
T Consensus         7 ~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~   63 (202)
T PRK13918          7 DTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEE   63 (202)
T ss_pred             ceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechH
Confidence            3456667664433222  35789999999999999888887665 455999988553

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=80.78  E-value=25  Score=27.60  Aligned_cols=69  Identities=20%  Similarity=0.172  Sum_probs=46.3

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      ....-+.||-   -++.+. +.|+.-|++|...+.+-....   + .+..+|+-|.||++.-.-+.. .+...++|.+
T Consensus        25 ~TlGVm~pGe---Y~F~T~-~~E~M~vvsG~l~V~lpg~~e---w-~~~~aGesF~VpanssF~v~v-~~~~~Y~C~y   93 (94)
T PF06865_consen   25 KTLGVMLPGE---YTFGTS-APERMEVVSGELEVKLPGEDE---W-QTYSAGESFEVPANSSFDVKV-KEPTAYLCSY   93 (94)
T ss_dssp             EEEEEE-SEC---EEEEES-S-EEEEEEESEEEEEETT-SS-----EEEETT-EEEE-TTEEEEEEE-SS-EEEEEEE
T ss_pred             ceEEEEeeeE---EEEcCC-CCEEEEEEEeEEEEEcCCCcc---c-EEeCCCCeEEECCCCeEEEEE-CcceeeEEEe
Confidence            3444566775   377887 999999999999999877653   1 368899999999987766544 4667777643

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=80.66  E-value=12  Score=32.97  Aligned_cols=53  Identities=17%  Similarity=0.111  Sum_probs=39.7

Q ss_pred             EEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceE-EEEEcCCCEEEe
Q 018395           40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEK-VVAIKKGDGIAL   92 (356)
Q Consensus        40 ~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~-~~~l~~GDv~~i   92 (356)
                      ...++++|..+...=...+.+++|++|...+...+.+|++. ...+.+||.+-.
T Consensus        21 ~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~   74 (211)
T PRK11753         21 HIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE   74 (211)
T ss_pred             eEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence            46788888866533336788999999999998777666544 457899999744

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=80.54  E-value=17  Score=31.92  Aligned_cols=76  Identities=17%  Similarity=0.129  Sum_probs=51.0

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEE----cCCcEEEEee-CCCCeEEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIV----PRFYVVSKIA-DPDGLAWF  299 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vv----P~g~~h~~~~-~~~~~~~~  299 (356)
                      +....+++|.+....=. . +..+.+|++|.+++...+++|+...-..+.+||++-.    .....+...+ ..++++++
T Consensus        20 ~~~~~~~kg~~l~~~g~-~-~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~   97 (211)
T PRK11753         20 CHIHKYPAKSTLIHAGE-K-AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVA   97 (211)
T ss_pred             CeEEEeCCCCEEEeCCC-C-CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEE
Confidence            45678888887643322 3 6689999999999999998888777778999999833    2222222222 24556666


Q ss_pred             EEE
Q 018395          300 SII  302 (356)
Q Consensus       300 ~~~  302 (356)
                      .+-
T Consensus        98 ~i~  100 (211)
T PRK11753         98 EIS  100 (211)
T ss_pred             EEc
Confidence            653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
3qac_A	465	Structure Of Amaranth 11s Proglobulin Seed Storage		6e-27
2evx_A	459	Crystal Structure Of Pumpkin Seed Globulin Length =		2e-26
3ehk_A	531	Crystal Structure Of Pru Du Amandin, An Allergenic		3e-23
1fxz_A	476	Crystal Structure Of Soybean Proglycinin A1ab1b Hom		1e-22
1ucx_A	476	Crystal Structure Of Proglycinin C12g Mutant Length		1e-22
1ud1_A	476	Crystal Structure Of Proglycinin Mutant C88s Length		1e-22
3kgl_A	466	Crystal Structure Of Procruciferin, 11s Globulin Fr		9e-16
3ksc_A	496	Crystal Structure Of Pea Prolegumin, An 11s Seed Gl		6e-14
3ksc_A	496	Crystal Structure Of Pea Prolegumin, An 11s Seed Gl		1e-08
3c3v_A	510	Crystal Structure Of Peanut Major Allergen Ara H 3		3e-10
2d5f_A	493	Crystal Structure Of Recombinant Soybean Proglycini		5e-10
1od5_A	492	Crystal Structure Of Glycinin A3b4 Subunit Homohexa		9e-10
1cau_A	181	Determination Of Three Crystal Structures Of Canava		8e-05
2cau_A	445	Canavalin From Jack Bean Length = 445		8e-05
1dgr_A	178	Refined Crystal Structure Of Canavalin From Jack Be		8e-05

>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein From Amaranthus Hypochondriacus L Length = 465

Iteration: 1
 Score =  118 bits (295), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 164/407 (40%), Gaps = 93/407 (22%)
Query: 19  GSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP--- 75
           G    W  NE    R   +   +  +E +G  LP +  +  + Y+ QG+G+ G+++P   
Sbjct: 33  GLTEVWDSNEQE-FRCAGVSVIRRTIEPHGLLLPSFTSAPELIYIEQGNGITGMMIPGCP 91
Query: 76  ----------------------------------EKEEKVVAIKKGDGIALPFGVVTWWY 101
                                             ++ +K+  +++GD  A+P GV  W Y
Sbjct: 92  ETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAY 151
Query: 102 NKEDTELVVLFLGDTSKGHKAGEF-----TNFFLTG----------------------AN 134
           N  D  LV + L DT+  + A +      T F+L G                        
Sbjct: 152 NNGDQPLVAVILIDTA--NHANQLDKNFPTRFYLAGKPQQEHSGEHQFSRESRRGERNTG 209
Query: 135 GIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IVKLDANAKLPEPK----KEHRDG-- 187
            IF GF T  ++ ++ + E   + L  +Q  +G IV++     + +P     +E   G  
Sbjct: 210 NIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRVQEGLHVIKPPSRAWEEREQGSR 269
Query: 188 -----------------MAFNCEE-APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVR 229
                            +A N ++ +  DV     GR+  +N+ NLP++  +   A    
Sbjct: 270 GSRYLPNGVEETICSARLAVNVDDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGV 329
Query: 230 LDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK 289
           L   AM +P ++ + A  + Y VRG GR QIV   G+ V +  +  G L +VP+ + + K
Sbjct: 330 LYRNAMMAPHYNLN-AHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVK 388
Query: 290 IADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSD 336
            A  DG  W S  T+ N +F  LAG     +SL   V+   + +  +
Sbjct: 389 QAFEDGFEWVSFKTSENAMFQSLAGRTSAIRSLPIDVVSNIYQISRE 435

>pdb|2EVX|A Chain A, Crystal Structure Of Pumpkin Seed Globulin Length = 459

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 166/390 (42%), Gaps = 74/390 (18%)
Query: 37  IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP--------------------- 75
           +   +  +   G  LP + ++ ++ +V QG G+ GI +P                     
Sbjct: 63  VNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFK 122
Query: 76  EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTS-----------KGHKAG- 123
           ++ +K+   ++GD + +P GV  W YN+  ++LV++   DT            K + AG 
Sbjct: 123 DQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGR 182
Query: 124 ---------EFTNFFLTGANG-----IFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-I 168
                    E+      G++G     IF+GF+ EF+  A+ +D   V+ L G+   +  I
Sbjct: 183 PEQVERGVEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRI 242
Query: 169 VKLDANAK--LPEPKKEHRDGMAF---------NCEEAPLDVDIKN-------------- 203
           V++D + +  LPE  +E R    +           EE    + +K               
Sbjct: 243 VQVDEDFEVLLPEKDEEERSRGRYIESESESENGLEETICTLRLKQNIGRSERADVFNPR 302
Query: 204 GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGP 263
           GGR+   N   LP++ +V   A+   L   AM +P ++ +S   V Y  RG+ R Q+V  
Sbjct: 303 GGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSH-SVMYATRGNARVQVVDN 361
Query: 264 DGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLS 323
            G+ V +  V+ G + ++P+ +VV K A   G  W +  T  N I   LAG +   + L 
Sbjct: 362 FGQSVFDGEVREGQVLMIPQNFVVIKRASDRGFEWIAFKTNDNAITNLLAGRVSQMRMLP 421
Query: 324 PSVLEAAFNVPSDVEKQFRSKRANEAIFFP 353
             VL   + +  +  ++ +  +    +  P
Sbjct: 422 LGVLSNMYRISREEAQRLKYGQQEMRVLSP 451

>pdb|3EHK|A Chain A, Crystal Structure Of Pru Du Amandin, An Allergenic Protein From Prunus Dulcis Length = 531

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 143/349 (40%), Gaps = 80/349 (22%)
Query: 76  EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFT--NFFLTG- 132
           ++ +K   I++GD +A+P GV  W YN  D ELV + L   S  H   +     F+L G 
Sbjct: 168 DRHQKTRRIREGDVVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGN 227
Query: 133 ----------------------------------------ANGIFTGFSTEFVSRAWDLD 152
                                                    N +F+GF+T+ +++A +++
Sbjct: 228 PENEFNQQGQSQPRQQGEQGRPGQHQQPFGRPRQQEQQGNGNNVFSGFNTQLLAQALNVN 287
Query: 153 ENTVKTLVGKQTGKG-IVKLDANAKLPEP---------------------KKEHRDGMAF 190
           E T + L G+   +  I+++  N    +P                     +++    MA 
Sbjct: 288 EETARNLQGQNDNRNQIIQVRGNLDFVQPPRGRQEREHEERQQEQLQQERQQQGEQLMAN 347
Query: 191 NCEEA------------PLDVDI--KNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMC 236
             EE             P   DI     GR+  LN+ NLP++  +   A+        + 
Sbjct: 348 GLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIY 407
Query: 237 SPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGL 296
           SP ++ + A  V Y++RG+ R Q+V  +G  +L+  V+ G LFIVP+ + V + A   G 
Sbjct: 408 SPHWNVN-AHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQGF 466
Query: 297 AWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKR 345
            +F+  T  N     LAG     ++L   VL  A+ +  +  +Q +  R
Sbjct: 467 EYFAFKTEENAFINTLAGRTSFLRALPDEVLANAYQISREQARQLKYNR 515

>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer Length = 476

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 165/442 (37%), Gaps = 108/442 (24%)
Query: 18  GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP-- 75
           GG    W PN  P    G +  ++  L +N    P Y +  +  Y+ QG G+ G++ P  
Sbjct: 30  GGLIETWNPNNKPFQCAG-VALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGC 88
Query: 76  --------------------EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD 115
                               ++ +K+   ++GD IA+P GV  W YN EDT +V + + D
Sbjct: 89  PSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIID 148
Query: 116 TSK---------------GHKAGEFTNFFL-----------------TGANGIFTGFSTE 143
           T+                G++  EF  +                        I +GF+ E
Sbjct: 149 TNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLE 208
Query: 144 FVSRAWDLDENTVKTLVGKQTGK---GIVKL----------------------------- 171
           F+  A+ +D+   K L G+  G+    IV +                             
Sbjct: 209 FLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEK 268
Query: 172 ------DANAKLPE--PKKEHRDGMAFNC----------EEAPLDVDIKNGGRVVLLNTK 213
                 D + + P     K  R+G+              + +  D+     G V    + 
Sbjct: 269 PQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSL 328
Query: 214 NLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTV 273
           + P +  +   A+   L   AM  P ++ + A  + Y + G    Q+V  +G+RV +  +
Sbjct: 329 DFPALSWLRLSAEFGSLRKNAMFVPHYNLN-ANSIIYALNGRALIQVVNCNGERVFDGEL 387
Query: 274 KAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNV 333
           + G + IVP+ +VV+  +  D   + S  T   P+   LAG+     +L   V++  FN+
Sbjct: 388 QEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNL 447
Query: 334 PSDVEKQFRSKRANEAIFFPPP 355
            S   +Q   K  N   F  PP
Sbjct: 448 KSQQARQI--KNNNPFKFLVPP 467

>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant Length = 476

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 165/442 (37%), Gaps = 108/442 (24%)
Query: 18  GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP-- 75
           GG    W PN  P    G +  ++  L +N    P Y +  +  Y+ QG G+ G++ P  
Sbjct: 30  GGLIETWNPNNKPFQCAG-VALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGC 88
Query: 76  --------------------EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD 115
                               ++ +K+   ++GD IA+P GV  W YN EDT +V + + D
Sbjct: 89  PSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIID 148
Query: 116 TSK---------------GHKAGEFTNFFL-----------------TGANGIFTGFSTE 143
           T+                G++  EF  +                        I +GF+ E
Sbjct: 149 TNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLE 208
Query: 144 FVSRAWDLDENTVKTLVGKQTGK---GIVKL----------------------------- 171
           F+  A+ +D+   K L G+  G+    IV +                             
Sbjct: 209 FLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEK 268
Query: 172 ------DANAKLPE--PKKEHRDGMAFNC----------EEAPLDVDIKNGGRVVLLNTK 213
                 D + + P     K  R+G+              + +  D+     G V    + 
Sbjct: 269 PQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSL 328
Query: 214 NLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTV 273
           + P +  +   A+   L   AM  P ++ + A  + Y + G    Q+V  +G+RV +  +
Sbjct: 329 DFPALSWLRLSAEFGSLRKNAMFVPHYNLN-ANSIIYALNGRALIQVVNCNGERVFDGEL 387
Query: 274 KAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNV 333
           + G + IVP+ +VV+  +  D   + S  T   P+   LAG+     +L   V++  FN+
Sbjct: 388 QEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNL 447
Query: 334 PSDVEKQFRSKRANEAIFFPPP 355
            S   +Q   K  N   F  PP
Sbjct: 448 KSQQARQI--KNNNPFKFLVPP 467

>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s Length = 476

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/442 (21%), Positives = 165/442 (37%), Gaps = 108/442 (24%)
Query: 18  GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP-- 75
           GG    W PN  P    G +  ++  L +N    P Y +  +  Y+ QG G+ G++ P  
Sbjct: 30  GGLIETWNPNNKPFQCAG-VALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGS 88
Query: 76  --------------------EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD 115
                               ++ +K+   ++GD IA+P GV  W YN EDT +V + + D
Sbjct: 89  PSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIID 148
Query: 116 TSK---------------GHKAGEFTNFFL-----------------TGANGIFTGFSTE 143
           T+                G++  EF  +                        I +GF+ E
Sbjct: 149 TNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLE 208
Query: 144 FVSRAWDLDENTVKTLVGKQTGK---GIVKL----------------------------- 171
           F+  A+ +D+   K L G+  G+    IV +                             
Sbjct: 209 FLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEK 268
Query: 172 ------DANAKLPE--PKKEHRDGMAFNC----------EEAPLDVDIKNGGRVVLLNTK 213
                 D + + P     K  R+G+              + +  D+     G V    + 
Sbjct: 269 PQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSL 328
Query: 214 NLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTV 273
           + P +  +   A+   L   AM  P ++ + A  + Y + G    Q+V  +G+RV +  +
Sbjct: 329 DFPALSWLRLSAEFGSLRKNAMFVPHYNLN-ANSIIYALNGRALIQVVNCNGERVFDGEL 387
Query: 274 KAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNV 333
           + G + IVP+ +VV+  +  D   + S  T   P+   LAG+     +L   V++  FN+
Sbjct: 388 QEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNL 447
Query: 334 PSDVEKQFRSKRANEAIFFPPP 355
            S   +Q   K  N   F  PP
Sbjct: 448 KSQQARQI--KNNNPFKFLVPP 467

>pdb|3KGL|A Chain A, Crystal Structure Of Procruciferin, 11s Globulin From Brassica Napus Length = 466

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 124/294 (42%), Gaps = 38/294 (12%)
Query: 76  EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTN---FFLTG 132
           +  +KV  I+ GD IA   GV  W+YN  +  LV++ + D +  H+     N   F+L G
Sbjct: 141 DMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLA-SHQNQLDRNPRPFYLAG 199
Query: 133 AN----------------GIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IVKLDANA 175
            N                 I  GF+ E +++A+ +D  T + L  +Q  +G I+++    
Sbjct: 200 NNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPF 259
Query: 176 KLPEPK------KEHRDGM-----AFNCEEA---PLDVDIKNG--GRVVLLNTKNLPLVG 219
            +  P       +E  +G+     +  C +    P + D+     G +  LN+ +LP++ 
Sbjct: 260 SVIRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILR 319
Query: 220 EVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF 279
            +   A    +   AM  P ++ + A  V Y+  G    Q+V  +G RV +  V  G L 
Sbjct: 320 FLRLSALRGSIRQNAMVLPQWNAN-ANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLL 378
Query: 280 IVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNV 333
            +P+ + V K A  +   W    T  N     LAG     + L   V+   + +
Sbjct: 379 SIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQI 432

>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin From Pisum Sativum L. Length = 496

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 92/221 (41%), Gaps = 52/221 (23%)
Query: 18  GGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP-- 75
           GG    W PN     R   +  ++  L++N    P+Y ++ +  ++ QG+G  G+V P  
Sbjct: 28  GGLIETWNPNN-KQFRCAGVALSRATLQRNALRRPYYSNAPQEIFIQQGNGYFGMVFPGC 86
Query: 76  -------------------EKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDT 116
                              ++ +KV   ++GD IA+P G+V W YN +DT ++ + L D 
Sbjct: 87  PETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDI 146
Query: 117 SKGHK-----------AGEFTNFFL-------------TGANGIFTGFSTEFVSRAWDLD 152
              +            AG     FL                N IF+GF  +F+  A++++
Sbjct: 147 RSSNNQLDQMPRRFYLAGNHEQEFLQYQHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVN 206
Query: 153 ENTVKTLVGKQTGK---GIVKLDANAKL---PEPKKEHRDG 187
            + V  L G+   +    IVK+     +   PE +  H+ G
Sbjct: 207 RHIVDRLQGRNEDEEKGAIVKVKGGLSIISPPEKQARHQRG 247

>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin From Pisum Sativum L. Length = 496

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 200 DIKN--GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGR 257
           DI N   GR+  + + +LP++  +   A+   L   AM  P ++ + A  + Y ++G  R
Sbjct: 333 DIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLN-ANSIIYALKGRAR 391
Query: 258 AQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIG 317
            Q+V  +G  V +  ++AG    VP+ Y V+  +  D  ++ +  T        LAG+  
Sbjct: 392 LQVVNCNGNTVFDGELEAGRALTVPQNYAVAAKSLSDRFSYVAFKTNDRAGIARLAGTSS 451
Query: 318 TWKSLSPSVLEAAFNVPSDVEKQFRS 343
              +L   V+ A FN+  +  +Q +S
Sbjct: 452 VINNLPLDVVAATFNLQRNEARQLKS 477

>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3 Length = 510

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 3/158 (1%)
Query: 198 DVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGR 257
           D+     G +   N  NL ++  +G  A+   L   A+  P ++ + A  + Y +RG   
Sbjct: 347 DIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTN-AHSIIYALRGRAH 405
Query: 258 AQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIG 317
            Q+V  +G RV +  ++ G++ +VP+ + V+  +  D   + +  T   P   +LAG   
Sbjct: 406 VQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDSRPSIANLAGENS 465
Query: 318 TWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP 355
              +L   V+  ++ +P +  +Q   K  N   FF PP
Sbjct: 466 VIDNLPEEVVANSYGLPREQARQL--KNNNPFKFFVPP 501

>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4 Subunit, Its Comparison With Mature Glycinin A3b4 Subunit, Responsible For Hexamer Assembly Length = 493

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 196 PLDVDIKN--GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVR 253
           P   D  N   GR+  LN+  LP + + G  A  V L    + SP ++ + A  V Y+ R
Sbjct: 338 PSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLN-ANSVIYVTR 396
Query: 254 GSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLA 313
           G GR ++V   G  V +  ++ G L +VP+ +VV++     GL +    T  N + +++ 
Sbjct: 397 GKGRVRVVNXQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIK 456
Query: 314 GSIGTWKSLSPSVLEAAFNVPSDVEKQFR 342
                ++++   VL  ++N+     +Q +
Sbjct: 457 ---DVFRAIPSEVLSNSYNLGQSQVRQLK 482

>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer Length = 492

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 196 PLDVDIKN--GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVR 253
           P   D  N   GR+  LN+  LP + + G  A  V L    + SP ++ + A  V Y+ R
Sbjct: 337 PSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLN-ANSVIYVTR 395
Query: 254 GSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLA 313
           G GR ++V   G  V +  ++ G L +VP+ +VV++     GL +    T  N + +++ 
Sbjct: 396 GKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIK 455
Query: 314 GSIGTWKSLSPSVLEAAFNVPSDVEKQFR 342
                ++++   VL  ++N+     +Q +
Sbjct: 456 ---DVFRAIPSEVLSNSYNLGQSQVRQLK 481

>pdb|1CAU|A Chain A, Determination Of Three Crystal Structures Of Canavalin By Molecular Replacement Length = 181

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 47  NGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106
           N   LPH+ DS  +  VL+G  +  +V P+  +    + +GD I +  G   +  N ++ 
Sbjct: 53  NTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIKIQAGTPFYLINPDNN 111
Query: 107 E-LVVLFLGDTSKGHKAGEFTNFFLTGANGI---FTGFSTEFVSRAWDLDENTVKTLVGK 162
           + L +L    T +  + G   +FFL+    +    + FS  F+  ++D   + ++  + +
Sbjct: 112 QNLRILKFAITFR--RPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQ 169
Query: 163 QTGKGIV 169
           +  +G++
Sbjct: 170 EEQEGVI 176

>pdb|2CAU|A Chain A, Canavalin From Jack Bean Length = 445

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 47  NGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106
           N   LPH+ DS  +  VL+G  +  +V P+  +    + +GD I +  G   +  N ++ 
Sbjct: 96  NTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIKIQAGTPFYLINPDNN 154
Query: 107 E-LVVLFLGDTSKGHKAGEFTNFFLTGANGI---FTGFSTEFVSRAWDLDENTVKTLVGK 162
           + L +L    T +  + G   +FFL+    +    + FS  F+  ++D   + ++  + +
Sbjct: 155 QNLRILKFAITFR--RPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQ 212
Query: 163 QTGKGIV 169
           +  +G++
Sbjct: 213 EEQEGVI 219

>pdb|1DGR|A Chain A, Refined Crystal Structure Of Canavalin From Jack Bean Length = 178

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 47  NGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT 106
           N   LPH+ DS  +  VL+G  +  +V P+  +    + +GD I +  G   +  N ++ 
Sbjct: 51  NTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIKIQAGTPFYLINPDNN 109
Query: 107 E-LVVLFLGDTSKGHKAGEFTNFFLTGANGI---FTGFSTEFVSRAWDLDENTVKTLVGK 162
           + L +L    T +  + G   +FFL+    +    + FS  F+  ++D   + ++  + +
Sbjct: 110 QNLRILKFAITFR--RPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQ 167
Query: 163 QTGKGIV 169
           +  +G++
Sbjct: 168 EEQEGVI 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	1e-91
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	1e-12
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	3e-90
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	4e-85
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	3e-14
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	9e-84
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	9e-83
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	3e-16
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	8e-09
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	1e-67
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	3e-67
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	2e-62
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	3e-61
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	2e-10
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	2e-60
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	3e-11
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	6e-56
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	5e-32
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	8e-12
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	7e-50
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	4e-48
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	2e-43
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	3e-10
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	3e-43
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	1e-13
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	6e-43
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	3e-38
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	1e-09
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	5e-33
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	9e-09
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	1e-13
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	3e-06
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	1e-06
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	2e-06
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	2e-06
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	1e-05
1v70_A	105	Probable antibiotics synthesis protein; structural	2e-04
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	3e-04
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	5e-04

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Length = 465

 Score =  281 bits (718), Expect = 1e-91
 Identities = 97/439 (22%), Positives = 166/439 (37%), Gaps = 89/439 (20%)

Query: 4   DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYV 63
            LT            G    W  NE    R   +   +  +E +G  LP +  +  + Y+
Sbjct: 18  RLTALEPTNRIQAERGLTEVWDSNE-QEFRCAGVSVIRRTIEPHGLLLPSFTSAPELIYI 76

Query: 64  LQGSGVAGIVLP-------------------------------------EKEEKVVAIKK 86
            QG+G+ G+++P                                     ++ +K+  +++
Sbjct: 77  EQGNGITGMMIPGCPETYESGSQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLRE 136

Query: 87  GDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGE---FTNFFLTG----------- 132
           GD  A+P GV  W YN  D  LV + L DT+      +    T F+L G           
Sbjct: 137 GDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLDKNFPTRFYLAGKPQQEHSGEHQ 196

Query: 133 -----------ANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IVKLDANAKLPEP 180
                         IF GF T  ++ ++ + E   + L  +Q  +G IV++     + +P
Sbjct: 197 FSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRVQEGLHVIKP 256

Query: 181 KKEHRDG-----------------------MAFNCEE-APLDVDIKNGGRVVLLNTKNLP 216
                +                        +A N ++ +  DV     GR+  +N+ NLP
Sbjct: 257 PSRAWEEREQGSRGSRYLPNGVEETICSARLAVNVDDPSKADVYTPEAGRLTTVNSFNLP 316

Query: 217 LVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAG 276
           ++  +   A    L   AM +P ++ + A  + Y VRG GR QIV   G+ V +  +  G
Sbjct: 317 ILRHLRLSAAKGVLYRNAMMAPHYNLN-AHNIMYCVRGRGRIQIVNDQGQSVFDEELSRG 375

Query: 277 NLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSD 336
            L +VP+ + + K A  DG  W S  T+ N +F  LAG     +SL   V+   + +  +
Sbjct: 376 QLVVVPQNFAIVKQAFEDGFEWVSFKTSENAMFQSLAGRTSAIRSLPIDVVSNIYQISRE 435

Query: 337 VEKQFRSKRANEAIFFPPP 355
                +  R    +F    
Sbjct: 436 EAFGLKFNRPETTLFRSSG 454

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Length = 465

 Score = 67.6 bits (164), Expect = 1e-12
 Identities = 31/180 (17%), Positives = 58/180 (32%), Gaps = 18/180 (10%)

Query: 13  VYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGVAG 71
           VY    G         LP+LR   + AAK  L +N    PHY  ++  + Y ++G G   
Sbjct: 299 VYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQ 358

Query: 72  IVLPEKEEKVVA-IKKGDGIALPFG-VVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFF 129
           IV  + +      + +G  + +P    +     ++  E V     +              
Sbjct: 359 IVNDQGQSVFDEELSRGQLVVVPQNFAIVKQAFEDGFEWVSFKTSEN--------AMFQS 410

Query: 130 LTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMA 189
           L G          + VS  + +       L   +    +            + E+R  ++
Sbjct: 411 LAGRTSAIRSLPIDVVSNIYQISREEAFGLKFNRPETTLF-------RSSGQGEYRRKIS 463

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Length = 459

 Score =  277 bits (709), Expect = 3e-90
 Identities = 86/426 (20%), Positives = 166/426 (38%), Gaps = 75/426 (17%)

Query: 4   DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYV 63
           +L  +   +      G    W   +    +   +   +  +   G  LP + ++ ++ +V
Sbjct: 31  NLRAQDPVRRAEAEAGFTEVW-DQDNDEFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFV 89

Query: 64  LQGSGVAGIVLP---------------------EKEEKVVAIKKGDGIALPFGVVTWWYN 102
            QG G+ GI +P                     ++ +K+   ++GD + +P GV  W YN
Sbjct: 90  AQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYN 149

Query: 103 KEDTELVVLFLGDTSKGHKA--GEFTNFFLTG------------------------ANGI 136
           +  ++LV++   DT             F+L G                        +  I
Sbjct: 150 RGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERGVEEWERSSRKGSSGEKSGNI 209

Query: 137 FTGFSTEFVSRAWDLDENTVKTLVGKQTGKGI-VKLDANAKLP----------EPKKEHR 185
           F+GF+ EF+  A+ +D   V+ L G+   +   V++D + ++             +    
Sbjct: 210 FSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQVDEDFEVLLPEKDEEERSRGRYIES 269

Query: 186 DGMAFNCEEAPL---------------DVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRL 230
           +  + N  E  +               DV    GGR+   N   LP++ +V   A+   L
Sbjct: 270 ESESENGLEETICTLRLKQNIGRSERADVFNPRGGRISTANYHTLPILRQVRLSAERGVL 329

Query: 231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI 290
              AM +P ++ + +  V Y  RG+ R Q+V   G+ V +  V+ G + ++P+ +VV K 
Sbjct: 330 YSNAMVAPHYTVN-SHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVVIKR 388

Query: 291 ADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAI 350
           A   G  W +  T  N I   LAG +   + L   VL   + +  +  ++ +  +    +
Sbjct: 389 ASDRGFEWIAFKTNDNAITNLLAGRVSQMRMLPLGVLSNMYRISREEAQRLKYGQQEMRV 448

Query: 351 FFPPPN 356
             P  +
Sbjct: 449 LSPGRS 454

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Length = 466

 Score =  264 bits (675), Expect = 4e-85
 Identities = 80/393 (20%), Positives = 134/393 (34%), Gaps = 44/393 (11%)

Query: 6   TPKLAKQVYG-GNGGSYHAWCPN-------ELPMLRQGNIGAAKLALEKNGFALPHYCDS 57
           T KL+    G G  G     C           P              +  G         
Sbjct: 63  TAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQG 122

Query: 58  ARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTS 117
            +     QG    G    +  +KV  I+ GD IA   GV  W+YN  +  LV++ + D +
Sbjct: 123 QQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLA 182

Query: 118 KGHKA--GEFTNFFLTG----------------ANGIFTGFSTEFVSRAWDLDENTVKTL 159
                       F+L G                   I  GF+ E +++A+ +D  T + L
Sbjct: 183 SHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQL 242

Query: 160 VGKQTGKG-IVKLDANAKLPEPKK-EHRDGMAFNCEEAPL---------------DVDIK 202
             +Q  +G I+++     +  P     R     N  E  +               DV   
Sbjct: 243 QNQQDNRGNIIRVQGPFSVIRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKP 302

Query: 203 NGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG 262
             G +  LN+ +LP++  +   A    +   AM  P ++ + A  V Y+  G    Q+V 
Sbjct: 303 QLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNAN-ANAVLYVTDGEAHVQVVN 361

Query: 263 PDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSL 322
            +G RV +  V  G L  +P+ + V K A  +   W    T  N     LAG     + L
Sbjct: 362 DNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGL 421

Query: 323 SPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP 355
              V+   + +  +  ++ +       +     
Sbjct: 422 PLEVISNGYQISLEEARRVKFNTIETTLTHSSG 454

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Length = 466

 Score = 72.6 bits (177), Expect = 3e-14
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 4  DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYV 63
           L       V     G    W  +  P LR   +   +  +E  G  LP +  +A++++V
Sbjct: 11 QLNALEPSHVLKAEAGRIEVWDHHA-PQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFV 69

Query: 64 LQGSGVAGIVLP 75
           +G G+ G V+P
Sbjct: 70 AKGEGLMGRVVP 81

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Length = 476

 Score =  261 bits (667), Expect = 9e-84
 Identities = 92/456 (20%), Positives = 160/456 (35%), Gaps = 107/456 (23%)

Query: 4   DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYV 63
            L            GG    W PN  P    G +  ++  L +N    P Y +  +  Y+
Sbjct: 16  KLNALKPDNRIESEGGLIETWNPNNKPFQCAG-VALSRCTLNRNALRRPSYTNGPQEIYI 74

Query: 64  LQGSGVAGIVLP----------------------EKEEKVVAIKKGDGIALPFGVVTWWY 101
            QG G+ G++ P                      ++ +K+   ++GD IA+P GV  W Y
Sbjct: 75  QQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMY 134

Query: 102 NKEDTELVVLFLGDTSKGHKA--GEFTNFFLTG--------------------------- 132
           N EDT +V + + DT+            F+L G                           
Sbjct: 135 NNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEE 194

Query: 133 ---ANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG---IVKLDANAKLPEPKKEHRD 186
                 I +GF+ EF+  A+ +D+   K L G+  G+    IV +     + +P  + + 
Sbjct: 195 ENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKPPTDEQQ 254

Query: 187 GMAFNCEE-----------------------------------------------APLDV 199
                 EE                                               +  D+
Sbjct: 255 QRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDI 314

Query: 200 DIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQ 259
                G V    + + P +  +   A+   L   AM  P ++ + A  + Y + G    Q
Sbjct: 315 YNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLN-ANSIIYALNGRALIQ 373

Query: 260 IVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTW 319
           +V  +G+RV +  ++ G + IVP+ +VV+  +  D   + S  T   P+   LAG+    
Sbjct: 374 VVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLL 433

Query: 320 KSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP 355
            +L   V++  FN+ S   +Q ++         PP 
Sbjct: 434 NALPEEVIQHTFNLKSQQARQIKNNN-PFKFLVPPQ 468

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531

 Score =  260 bits (664), Expect = 9e-83
 Identities = 81/360 (22%), Positives = 144/360 (40%), Gaps = 80/360 (22%)

Query: 75  PEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGE--FTNFFLTG 132
            ++ +K   I++GD +A+P GV  W YN  D ELV + L   S  H   +     F+L G
Sbjct: 167 LDRHQKTRRIREGDVVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAG 226

Query: 133 -----------------------------------------ANGIFTGFSTEFVSRAWDL 151
                                                     N +F+GF+T+ +++A ++
Sbjct: 227 NPENEFNQQGQSQPRQQGEQGRPGQHQQPFGRPRQQEQQGNGNNVFSGFNTQLLAQALNV 286

Query: 152 DENTVKTLVGKQTGKG-IVKLDANAKLPEP--------------------KKEHRDGMAF 190
           +E T + L G+   +  I+++  N    +P                    +++  + +  
Sbjct: 287 NEETARNLQGQNDNRNQIIQVRGNLDFVQPPRGRQEREHEERQQEQLQQERQQQGEQLMA 346

Query: 191 NCEEA-------------PLDVDIKN--GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAM 235
           N  E              P   DI +   GR+  LN+ NLP++  +   A+        +
Sbjct: 347 NGLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGI 406

Query: 236 CSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDG 295
            SP ++ + A  V Y++RG+ R Q+V  +G  +L+  V+ G LFIVP+ + V + A   G
Sbjct: 407 YSPHWNVN-AHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQG 465

Query: 296 LAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP 355
             +F+  T  N     LAG     ++L   VL  A+ +  +  +Q +  R          
Sbjct: 466 FEYFAFKTEENAFINTLAGRTSFLRALPDEVLANAYQISREQARQLKYNRQETIALSSSQ 525

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531

 Score = 78.8 bits (193), Expect = 3e-16
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 4  DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYV 63
           L  +          G    W  N+    +   + A+++ +++NG  LP Y ++ ++ Y+
Sbjct: 16 QLQAREPDNRIQAEAGQIETWNFNQ-GDFQCAGVAASRITIQRNGLHLPSYSNAPQLIYI 74

Query: 64 LQGSGVAGIVLP 75
          +QG GV G V  
Sbjct: 75 VQGRGVLGAVFS 86

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Length = 531

 Score = 56.1 bits (134), Expect = 8e-09
 Identities = 24/155 (15%), Positives = 53/155 (34%), Gaps = 11/155 (7%)

Query: 13  VYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGVAG 71
           ++    G       + LP+LR   + A +    +NG   PH+  ++  V YV++G+    
Sbjct: 370 IFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQ 429

Query: 72  IVLPEKEEKVVA-IKKGDGIALP-FGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFF 129
           +V    +  +   +++G    +P    V      +  E       + +            
Sbjct: 430 VVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQGFEYFAFKTEENAF--------INT 481

Query: 130 LTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQT 164
           L G          E ++ A+ +     + L   + 
Sbjct: 482 LAGRTSFLRALPDEVLANAYQISREQARQLKYNRQ 516

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Length = 418

 Score =  217 bits (554), Expect = 1e-67
 Identities = 65/410 (15%), Positives = 133/410 (32%), Gaps = 73/410 (17%)

Query: 11  KQVYGGNGGSYHA---WCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGS 67
              YG   G       +           N    ++  + N   LP + D+  +  + QG 
Sbjct: 15  STRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHADADNILVIQQGQ 74

Query: 68  GVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTE-LVVLFLGDTSKGHKAGEFT 126
               +      +    + +G  + +P G +++  N+ D + L V  +      +  G+F 
Sbjct: 75  ATVTVANGNNRK-SFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMPV--NTPGQFE 131

Query: 127 NFFLTG---ANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKE 183
           +FF       +    GFS   +  A++ + N ++ ++ ++   G  +     +      E
Sbjct: 132 DFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQRRWSTRSSE 191

Query: 184 HRDG--------------------------------MAFNCEEAPLDVDIKNGGRVVLLN 211
           + +G                                   N  E   D+    G    +  
Sbjct: 192 NNEGVIVKVSKEHVEELTKHAKSVSKKGSEEEGDITNPINLREGEPDLSNNFGKLFEVKP 251

Query: 212 TKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK----- 266
            K  P + ++      V +   A+  P F+   A+ +  + +G+G  ++V    +     
Sbjct: 252 DKKNPQLQDLDMMLTCVEIKEGALMLPHFN-SKAMVIVVVNKGTGNLELVAVRKEQQQRG 310

Query: 267 -------------------RVLETTVKAGNLFIVPRFYVVSKIADPD-GLAWFSIITTPN 306
                              R     +K G++FI+P  + V+  A  +  L  F I    N
Sbjct: 311 RREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASSELHLLGFGINAENN 370

Query: 307 PIFTHLAGSIGT-WKSLSPSVLEAAFNVPS-DVEKQFRSKRANEAIFFPP 354
                LAG        +     + AF      VEK  ++++  E+ F   
Sbjct: 371 HR-IFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKLIKNQK--ESHFVSA 417

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Length = 434

 Score =  217 bits (552), Expect = 3e-67
 Identities = 66/388 (17%), Positives = 130/388 (33%), Gaps = 44/388 (11%)

Query: 7   PKLAKQVYGGNGGSYHA---WCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYV 63
            +  + +Y    G       +      M    N    +   + N   LPH+ D+  +  V
Sbjct: 28  DRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPHHADADFLLVV 87

Query: 64  LQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTE-LVVLFLGDTSKGHKA 122
           L G+ V  +V P+  +    +++G    +P G   +  N +D E L ++ L         
Sbjct: 88  LNGTAVLTLVNPDSRD-SYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLAIPVN--NP 144

Query: 123 GEFTNFFLTG---ANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG------------ 167
             F +FFL+          GFS   +  ++D D   +  ++  +  +             
Sbjct: 145 HRFQDFFLSSTEAQQSYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEESREEGVI 204

Query: 168 -------IVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGE 220
                  I +L  +AK    K+       FN   +   +     GR   +  +  P + +
Sbjct: 205 VELKREQIQELMKHAKSSSRKELSSQDEPFNLRNSK-PIYSNKFGRWYEMTPEKNPQLKD 263

Query: 221 VGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK------------RV 268
           +      V +   A+  P +S   A+ +  I  G  + ++VG   +            + 
Sbjct: 264 LDVFISSVDMKEGALLLPHYSSK-AIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQR 322

Query: 269 LETTVKAGNLFIVPRFYVVSKIADPDG-LAWFSIITTPNPIFTHLAGSIGTWKSLSPSVL 327
               +   ++F++P  Y V+  A  +     F I    N       G       +   VL
Sbjct: 323 YRAELSEDDVFVIPAAYPVAINATSNLNFFAFGINAENNRRNFLAGGKDNVMSEIPTEVL 382

Query: 328 EAAFNVPSDVEKQFRSKRANEAIFFPPP 355
           E +F       ++   K++        P
Sbjct: 383 EVSFPASGKKVEKLIKKQSESHFVDAQP 410

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Length = 397

 Score =  203 bits (517), Expect = 2e-62
 Identities = 55/372 (14%), Positives = 118/372 (31%), Gaps = 38/372 (10%)

Query: 11  KQVYGGNGGSYHA---WCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGS 67
             ++    G       +      +    +    +   +     LP   D+  +  V  GS
Sbjct: 23  NTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGS 82

Query: 68  GVAGIVLPEKEEKVVA-----IKKGDGIALPFGVVTWWYNKEDTE-LVVLFLGDTSKGHK 121
            +  +V P+   +            D   +P G + +  N +  E L ++ L       +
Sbjct: 83  AILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQ 142

Query: 122 AGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTG--KGIVKLDANAKLPE 179
             EF              FS   +  +++     +  ++ ++ G  +G++    + ++ E
Sbjct: 143 IHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNIDSEQIKE 202

Query: 180 PKKEHRDGMAFNCEEAPLDVDIKN-GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSP 238
             K  +     +  +   D  I N  G +      +L +          + ++  A+  P
Sbjct: 203 LSKHAKSSSRKSLSKQ--DNTIGNEFGNLTERTDNSLNV------LISSIEMEEGALFVP 254

Query: 239 GFSCDSALQVTYIVRGSGRAQIVGPDGK------RVLETTVKAGNLFIVPRFYVVSKIAD 292
            +    A+ +  +  G    ++VGP G             +   ++F++P  Y V+  A 
Sbjct: 255 HYYSK-AIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKAT 313

Query: 293 PDG-LAWFSIITTPNPIFTHLAGSIGTWKS------LSPSVLEAAFNVPS-DVEKQFRSK 344
            +     F I    N     LAG      S          VL   F+    +V K    +
Sbjct: 314 SNVNFTGFGINANNNNRNL-LAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQ 372

Query: 345 RANEAIFFPPPN 356
               + F    +
Sbjct: 373 S--GSYFVDAHH 382

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score =  201 bits (511), Expect = 3e-61
 Identities = 61/373 (16%), Positives = 130/373 (34%), Gaps = 38/373 (10%)

Query: 15  GGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVL 74
            G       +      +    +    +   + N   LPH+ D+  + +VL G  +  +V 
Sbjct: 27  NGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVN 86

Query: 75  PEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTE-LVVLFLGDTSKGHKAGEFTNFFLTGA 133
            +  +    +  GD   +P G   +  N  D + L +++L      +K G + +FFL+  
Sbjct: 87  NDDRD-SYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPV--NKPGRYDDFFLSST 143

Query: 134 NG---IFTGFSTEFVSRAWDLDENTVKTLVG-------KQTGKGIVKLDANAKLPEPKKE 183
                   GFS   +  ++  +   +  ++        +Q G  +       +    + +
Sbjct: 144 QAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQEGVIVELSKEQIRQLSRRAK 203

Query: 184 HRDGMAFNCEEAPLDVDIKN------GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCS 237
                  + E+ P ++  +N       G+   +  +  P + ++      V ++  A+  
Sbjct: 204 SSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLL 263

Query: 238 PGFSCDSALQVTYIVRGSGRAQIVGPDGK-------------RVLETTVKAGNLFIVPRF 284
           P F+   A+ +  I  G    ++VG   +             +     +   ++F++P  
Sbjct: 264 PHFN-SKAIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAA 322

Query: 285 YVVSKIADPDGLAWFSIITTPNPIFTHLAGSI-GTWKSLSPSVLEAAFNVP-SDVEKQFR 342
           Y     A  +       I   N     LAG      + +   V E AF     DVE+  +
Sbjct: 323 YPFVVNATSNLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLK 382

Query: 343 SKRANEAIFFPPP 355
            +R  E+ F    
Sbjct: 383 KQR--ESYFVDAQ 393

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Length = 416

 Score = 61.0 bits (147), Expect = 2e-10
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 25/191 (13%)

Query: 13  VYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSA-RVAYVLQGSGVAG 71
           +Y  N G +    P + P LR  +I  + + + +    LPH+   A  +  + +G     
Sbjct: 225 IYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIE 284

Query: 72  IVLPEKEEKVVA--------------IKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTS 117
           +V  +++++                 + + D   +P           +   +   +   +
Sbjct: 285 LVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFGINAEN 344

Query: 118 KGHKAGEFTNFFLTGA-NGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAK 176
                      FL G  + +      +    A+      V+ L+ KQ     V  DA  +
Sbjct: 345 NQ-------RNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFV--DAQPQ 395

Query: 177 LPEPKKEHRDG 187
             E   + R G
Sbjct: 396 QKEEGSKGRKG 406

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score =  199 bits (507), Expect = 2e-60
 Identities = 53/344 (15%), Positives = 129/344 (37%), Gaps = 28/344 (8%)

Query: 35  GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF 94
            +    +   + N   LPH+ DS  +  VL+G  +  +V P+  +    + +GD I +  
Sbjct: 84  RDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIKIQA 142

Query: 95  GVVTWWYNKEDTE-LVVLFLGDTSKGHKAGEFTNFFLTG---ANGIFTGFSTEFVSRAWD 150
           G   +  N ++ + L +L    T    + G   +FFL+         + FS  F+  ++D
Sbjct: 143 GTPFYLINPDNNQNLRILKFAITF--RRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYD 200

Query: 151 LDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIK-------- 202
              + ++  + ++  +G++      ++ E  K  +              +++        
Sbjct: 201 SPYDEIEQTLLQEEQEGVIVKMPKDQIQEISKHAQSSSRKTLSSQDKPFNLRSRDPIYSN 260

Query: 203 NGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG 262
           N G++  +  +    + ++    + ++++  A+  P ++   A  +     G    ++VG
Sbjct: 261 NYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYN-SRATVILVANEGRAEVELVG 319

Query: 263 PDGK----------RVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHL 312
            + +          R    T+  G++ ++P  + V+  A  D       +   N     L
Sbjct: 320 LEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAASDLNMVGIGVNAENNERNFL 379

Query: 313 AGSIGTW-KSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP 355
           AG      + +   V +  F    +  ++    +  E+ F    
Sbjct: 380 AGHKENVIRQIPRQVSDLTFPGSGEEVEELLENQ-KESYFVDGQ 422

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Length = 445

 Score = 63.4 bits (153), Expect = 3e-11
 Identities = 29/186 (15%), Positives = 56/186 (30%), Gaps = 25/186 (13%)

Query: 14  YGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSA-RVAYVLQGSGVAGI 72
           Y  N G  +   P +   LR  +I    L + +    +PHY   A  +    +G     +
Sbjct: 258 YSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVEL 317

Query: 73  VLPEKEEKVVA-----------IKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHK 121
           V  E++++              + +GD I +P           D  +V + +   +    
Sbjct: 318 VGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAASDLNMVGIGVNAENNE-- 375

Query: 122 AGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPK 181
                NF       +      +     +      V+ L+  Q     V         +P+
Sbjct: 376 ----RNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELLENQKESYFVD-------GQPR 424

Query: 182 KEHRDG 187
                G
Sbjct: 425 HIDAGG 430

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Length = 510

 Score =  189 bits (481), Expect = 6e-56
 Identities = 60/330 (18%), Positives = 120/330 (36%), Gaps = 48/330 (14%)

Query: 69  VAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNF 128
           +AG    E        ++    +LP+   +        E      G  S+  +AG+    
Sbjct: 178 LAGNHEQEFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEH 237

Query: 129 FLTGANGIFTGFSTEFVSRAWDLDENTVKTLV----GKQTGKGIVKLDANAKLPEPKK-- 182
                  IF+GF+ EF+++A+ +D+  +   +      +    IV +    ++  P +  
Sbjct: 238 E---GGNIFSGFTPEFLAQAFQVDDRQIVQNLRGENESEEQGAIVTVRGGLRILSPDRKR 294

Query: 183 -----------------------EHRDGMAFNCEEAPL--------------DVDIKNGG 205
                                      G     EE                 D+     G
Sbjct: 295 GADEEEEYDEDEYEYDEEDRRRGRGSRGSGNGIEETICTATVKKNIGRNRSPDIYNPQAG 354

Query: 206 RVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG 265
            +   N  NL ++  +G  A+   L   A+  P ++ + A  + Y +RG    Q+V  +G
Sbjct: 355 SLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTN-AHSIIYALRGRAHVQVVDSNG 413

Query: 266 KRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPS 325
            RV +  ++ G++ +VP+ + V+  +  D   + +  T   P   +LAG      +L   
Sbjct: 414 NRVYDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDSRPSIANLAGENSVIDNLPEE 473

Query: 326 VLEAAFNVPSDVEKQFRSKRANEAIFFPPP 355
           V+  ++ +P +  +Q ++       F PP 
Sbjct: 474 VVANSYGLPREQARQLKNNN-PFKFFVPPS 502

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Length = 510

 Score =  124 bits (312), Expect = 5e-32
 Identities = 41/205 (20%), Positives = 69/205 (33%), Gaps = 42/205 (20%)

Query: 4   DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYV 63
            L  +         GG    W PN       G +  ++L L +N    P Y ++ +  ++
Sbjct: 16  RLNAQRPDNRIESEGGYIETWNPNNQEFECAG-VALSRLVLRRNALRRPFYSNAPQEIFI 74

Query: 64  LQGSGVAGIVLP-----------------------------------EKEEKVVAIKKGD 88
            QG G  G++ P                                   +  +KV    +GD
Sbjct: 75  QQGRGYFGLIFPGCPSTYEEPAQQGRRYQSQRPPRRLQEEDQSQQQQDSHQKVHRFNEGD 134

Query: 89  GIALPFGVVTWWYNKEDTELVVLFLGDTSKG-HKAGEFTNFFLTGANGIFTGFSTEFVSR 147
            IA+P GV  W YN  DT++V + L DT+   ++  +F   F    N        EF+  
Sbjct: 135 LIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQFPRRFNLAGN-----HEQEFLRY 189

Query: 148 AWDLDENTVKTLVGKQTGKGIVKLD 172
                ++  ++L             
Sbjct: 190 QQQSRQSRRRSLPYSPYSPQSQPRQ 214

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Length = 510

 Score = 65.3 bits (158), Expect = 8e-12
 Identities = 29/153 (18%), Positives = 52/153 (33%), Gaps = 9/153 (5%)

Query: 13  VYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGVAG 71
           +Y    GS        L +LR   + A    L +N   +PHY  ++  + Y L+G     
Sbjct: 348 IYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQ 407

Query: 72  IVLPEKEEKVVA-IKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFL 130
           +V           +++G  + +P        ++ D    V F  D+             L
Sbjct: 408 VVDSNGNRVYDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDSRPSI-------ANL 460

Query: 131 TGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQ 163
            G N +      E V+ ++ L     + L    
Sbjct: 461 AGENSVIDNLPEEVVANSYGLPREQARQLKNNN 493

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score =  169 bits (430), Expect = 7e-50
 Identities = 54/350 (15%), Positives = 113/350 (32%), Gaps = 22/350 (6%)

Query: 11  KQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGV 69
             +   +GG+         P+ +   +    ++LE       H+  ++A  AYV++G   
Sbjct: 28  TPLVLYDGGTTKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTR 85

Query: 70  AGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFF 129
             +  PE + ++  + KG     P G               L + +       G F+   
Sbjct: 86  ITLTSPEGKVEIADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFND------GTFSEGA 139

Query: 130 LTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQ---TGKGIVKLDANAKLPEPKKEHRD 186
                   +     +V          V  L  KQ   +  G       +  P+ +    +
Sbjct: 140 TFSVTDWLSHTPIAWVEENLGWTAAQVAQLPKKQVYISSYGPASGPLASATPQGQTAKIE 199

Query: 187 GMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSAL 246
               +       +    G  + L + K  P  G       L+ L+  AM    +   +A 
Sbjct: 200 VPHTHNLLGQQPLVSLGGNELRLASAKEFP--GSFNMTGALIHLEPGAMRQLHW-HPNAD 256

Query: 247 QVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVS-KIADPDGLAWFSIITTP 305
           +  Y++ G     +   +GK  +   ++ G++  VP+ Y  + + +    L    +    
Sbjct: 257 EWQYVLDGEMDLTVFASEGKASVS-RLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDG 315

Query: 306 NPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP 355
           +     L+  +    S   SVL   F +  ++ K+   +        P  
Sbjct: 316 DYQSIDLSTWLA---SNPSSVLGNTFQISPELTKKLPVQD--TIFSLPTQ 360

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Length = 496

 Score =  168 bits (426), Expect = 4e-48
 Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 5/210 (2%)

Query: 147 RAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGR 206
           R  + +E   K   G Q GK   + D    L E     +  +      +P D+     GR
Sbjct: 285 RRGEEEEEDKKERGGSQKGKSRRQGDN--GLEETVCTAKLRLNIGPSSSP-DIYNPEAGR 341

Query: 207 VVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK 266
           +  + + +LP++  +   A+   L   AM  P ++ + A  + Y ++G  R Q+V  +G 
Sbjct: 342 IKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLN-ANSIIYALKGRARLQVVNCNGN 400

Query: 267 RVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSV 326
            V +  ++AG    VP+ Y V+  +  D  ++ +  T        LAG+     +L   V
Sbjct: 401 TVFDGELEAGRALTVPQNYAVAAKSLSDRFSYVAFKTNDRAGIARLAGTSSVINNLPLDV 460

Query: 327 LEAAFNVPSDVEKQFRSKRANEAIFFPPPN 356
           + A FN+  +  +Q +S         P   
Sbjct: 461 VAATFNLQRNEARQLKSNN-PFKFLVPARE 489

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Length = 496

 Score =  155 bits (393), Expect = 2e-43
 Identities = 50/230 (21%), Positives = 91/230 (39%), Gaps = 49/230 (21%)

Query: 4   DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYV 63
            L            GG    W PN     R   +  ++  L++N    P+Y ++ +  ++
Sbjct: 14  RLDALEPDNRIESEGGLIETWNPNN-KQFRCAGVALSRATLQRNALRRPYYSNAPQEIFI 72

Query: 64  LQGSGVAGIVLP---------------------EKEEKVVAIKKGDGIALPFGVVTWWYN 102
            QG+G  G+V P                     ++ +KV   ++GD IA+P G+V W YN
Sbjct: 73  QQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYN 132

Query: 103 KEDTELVVLFLGDTSKGHKAGE--FTNFFLTG----------------------ANGIFT 138
            +DT ++ + L D    +   +     F+L G                       N IF+
Sbjct: 133 DQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQYQHQQGGKQEQENEGNNIFS 192

Query: 139 GFSTEFVSRAWDLDENTVKTLVGK---QTGKGIVKLDANAKLPEPKKEHR 185
           GF  +F+  A++++ + V  L G+   +    IVK+     +  P ++  
Sbjct: 193 GFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKVKGGLSIISPPEKQA 242

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Length = 496

 Score = 60.3 bits (145), Expect = 3e-10
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 9/160 (5%)

Query: 12  QVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGVA 70
            +Y    G        +LP+LR   + A   +L KN   +PHY  ++  + Y L+G    
Sbjct: 333 DIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARL 392

Query: 71  GIVLPEKEEKVVA-IKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFF 129
            +V           ++ G  + +P         K  ++        T+            
Sbjct: 393 QVVNCNGNTVFDGELEAGRALTVPQNYA--VAAKSLSDRFSYVAFKTN-----DRAGIAR 445

Query: 130 LTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIV 169
           L G + +      + V+  ++L  N  + L      K +V
Sbjct: 446 LAGTSSVINNLPLDVVAATFNLQRNEARQLKSNNPFKFLV 485

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score =  153 bits (386), Expect = 3e-43
 Identities = 54/335 (16%), Positives = 111/335 (33%), Gaps = 18/335 (5%)

Query: 14  YGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIV 73
               GG        ELP+    N+ +  + L+       H+   A  AY++ GS    IV
Sbjct: 58  RLEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIV 115

Query: 74  LPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGA 133
             +    +  + +GD    P G+       E+    +L   D       G F+       
Sbjct: 116 DEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDD-------GSFSENSTFQL 168

Query: 134 NGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDG-MAFNC 192
                    E ++  + + +  +  L GK+      +L  + K    +  + +    F  
Sbjct: 169 TDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTY 228

Query: 193 EEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIV 252
                +     GG+V + ++ N          + LV ++  AM    +  ++  +  Y +
Sbjct: 229 RLLEQEPIESEGGKVYIADSTNFK--VSKTIASALVTVEPGAMRELHWHPNTH-EWQYYI 285

Query: 253 RGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVS-KIADPDGLAWFSIITTPNPIFTH 311
            G  R  +   DG        +AG++  VP       +    + L +  I    +     
Sbjct: 286 SGKARMTVFASDGHARTF-NYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVS 344

Query: 312 LAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRA 346
           L   +     L  + ++A  ++  D       ++ 
Sbjct: 345 LNQWLA---MLPETFVQAHLDLGKDFTDVLSKEKH 376

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 70.6 bits (172), Expect = 1e-13
 Identities = 31/179 (17%), Positives = 55/179 (30%), Gaps = 7/179 (3%)

Query: 178 PEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCS 237
           PE        M F+  +    ++   GG    +  + LP        +  +RL   A+  
Sbjct: 38  PETDHGTVSNMKFSFSDTHNRLE--KGGYAREVTVRELP--ISENLASVNMRLKPGAIRE 93

Query: 238 PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLA 297
                    +  Y++ GS R  IV   G+  ++  V  G+L+  P     S  A  +G  
Sbjct: 94  L--HWHKEAEWAYMIYGSARVTIVDEKGRSFIDD-VGEGDLWYFPSGLPHSIQALEEGAE 150

Query: 298 WFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPPN 356
           +  +    +                   V+ A F V  +       K         P +
Sbjct: 151 FLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKEKYIFENQLPGS 209

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A Length = 493

 Score =  154 bits (390), Expect = 6e-43
 Identities = 51/264 (19%), Positives = 89/264 (33%), Gaps = 62/264 (23%)

Query: 4   DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYV 63
           +L            GG    W     P L+   +  +K  L +NG  LP Y    ++  V
Sbjct: 13  NLNALEPDHRVESEGGLIETWNSQH-PELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIV 71

Query: 64  LQGSGVAGIVLP-------------------------EKEEKVVAIKKGDGIALPFGVVT 98
           +QG G  G   P                         +  +K+    +GD + +P GV  
Sbjct: 72  VQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPY 131

Query: 99  WWYNKEDTELVVLFLGDTSKGHKAGEFT--NFFLTG------------------------ 132
           W YN  D  +V + L DTS  +   +     F+L G                        
Sbjct: 132 WTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQ 191

Query: 133 ---------ANGIFTGFSTEFVSRAWDLDENTVKTLVGK-QTGKGIVKLDANAKLPEPKK 182
                       + +GFS  F++++++ +E+T + L       K IV ++    +  PK 
Sbjct: 192 GQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPKW 251

Query: 183 EHRDGMAFNCEEAPLDVDIKNGGR 206
           + ++    + +E           R
Sbjct: 252 QEQEDEDEDEDEEYEQTPSYPPRR 275

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Length = 178

 Score =  120 bits (301), Expect = 5e-33
 Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 8/142 (5%)

Query: 35  GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF 94
            +    +   + N   LPH+ DS  +  VL+G  +  +V P+  +    + +GD I +  
Sbjct: 39  RDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIKIQA 97

Query: 95  GVVTWWYNKEDTE-LVVLFLGDTSKGHKAGEFTNFFLTGANG---IFTGFSTEFVSRAWD 150
           G   +  N ++ + L +L    T    + G   +FFL+         + FS  F+  ++D
Sbjct: 98  GTPFYLINPDNNQNLRILKFAITF--RRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYD 155

Query: 151 LDENTVKTLVGKQTGKG-IVKL 171
              + ++  + ++  +G IVK+
Sbjct: 156 SPYDEIEQTLLQEEQEGVIVKM 177

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Length = 178

 Score = 53.4 bits (128), Expect = 9e-09
 Identities = 26/165 (15%), Positives = 50/165 (30%), Gaps = 19/165 (11%)

Query: 204 GGRVVLL---NTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQI 260
            G + LL   N     L                 +  P  S   +  +  ++ G     +
Sbjct: 19  HGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHS--DSDLLVLVLEGQAILVL 76

Query: 261 VGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFT-------HLA 313
           V PDG+      +  G+   +        + +PD      I+                L+
Sbjct: 77  VNPDGRDTY--KLDQGDAIKIQAG-TPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLS 133

Query: 314 GSIG---TWKSLSPSVLEAAFNVPSD-VEKQFRSKRANEAIFFPP 354
            +        + S + LEA+++ P D +E+    +     I   P
Sbjct: 134 STKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMP 178

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Length = 201

 Score = 68.3 bits (166), Expect = 1e-13
 Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 5/161 (3%)

Query: 190 FNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVT 249
            +      +    NG  V  L+    P    +G   + V         P      A ++ 
Sbjct: 39  SSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHI-HPRATEIG 97

Query: 250 YIVRGSGRAQIVG--PDGKRVLETTVKAGNLFIVPR-FYVVSKIADPDGLAWFSIITTPN 306
            +++G     I+G    G ++    V+AG  F++PR                     + N
Sbjct: 98  MVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQN 157

Query: 307 PIFTHLAGSI-GTWKSLSPSVLEAAFNVPSDVEKQFRSKRA 346
           P    +  ++ G+   +   VL  A  V + V +  +SK A
Sbjct: 158 PGIVFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKFA 198

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Length = 201

 Score = 46.4 bits (109), Expect = 3e-06
 Identities = 26/160 (16%), Positives = 54/160 (33%), Gaps = 9/160 (5%)

Query: 10  AKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSA-RVAYVLQGSG 68
           A      NG +       E P      +   ++     G   PH    A  +  V++G  
Sbjct: 45  AGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGEL 104

Query: 69  VAGIVLPEKEEK---VVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEF 125
           + GI+             ++ G+   +P G++ + +N   TE  ++   ++         
Sbjct: 105 LVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVP 164

Query: 126 TNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTG 165
              F +          T  +++A  ++   V+ L  K  G
Sbjct: 165 LTLFGSDP-----PIPTPVLTKALRVEAGVVELLKSKFAG 199

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y Length = 93

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 267 RVLETTVKAGNLFIVPRFYVVSKIADPDG-LAWFSIITTPN-PIFTHLAGSIGT-WKSLS 323
           R    T+  G++ ++P  + V+  A  D  +    +    N   F  LAG      + + 
Sbjct: 4   RRYAATLSEGDIIVIPSSFPVALKAASDLNMVGIGVNAENNERNF--LAGHKENVIRQIP 61

Query: 324 PSVLEAAFNVPS-DVEKQFRSKRANEAIFFP 353
             V +  F     +VE+   +++  E+ F  
Sbjct: 62  RQVSDLTFPGSGEEVEELLENQK--ESYFVD 90

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Length = 354

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 44/278 (15%), Positives = 84/278 (30%), Gaps = 29/278 (10%)

Query: 35  GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF 94
             + A    +     A  H  + + + ++++G G    V  E+      + +GD I  P 
Sbjct: 98  ATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGER----TPMNEGDFILTPQ 153

Query: 95  GVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDEN 154
                  N  D  ++ L   D                     F     E        + +
Sbjct: 154 WRWHDHGNPGDEPVIWLDGLD------LPLVNIL-----GCGFAEDYPEEQQPVTRKEGD 202

Query: 155 TVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKN 214
            +               +++          R+    +      D D  +G ++  +N   
Sbjct: 203 YLPRYAANMLPLRHQTGNSSPIFNYRYDRSRE--VLHDLTRLGDADEWDGYKMRYVNPVT 260

Query: 215 LPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVK 274
                    GA L  L          + DS   + ++V GSG+  I     +     +  
Sbjct: 261 GGYPMP-SMGAFLQLLPKGFASRVARTTDST--IYHVVEGSGQVII---GNETF---SFS 311

Query: 275 AGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHL 312
           A ++F+VP ++ VS     D    FS   +  P+   L
Sbjct: 312 AKDIFVVPTWHGVSFQTTQD-SVLFSF--SDRPVQEAL 346

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X Length = 79

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 13 VYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSA-RVAYVLQGSGVAG 71
          +Y  N G  +   P +   LR  +I    L + +    +PHY   A  +    +G     
Sbjct: 12 IYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVE 71

Query: 72 IVLPEKEE 79
          +V  E+++
Sbjct: 72 LVGLEQQQ 79

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Length = 394

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 38/285 (13%), Positives = 75/285 (26%), Gaps = 37/285 (12%)

Query: 35  GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF 94
           G + +    ++    A  H   ++ + ++++GSG   IV   K    V +   D +  P 
Sbjct: 121 GWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHK----VELGANDFVLTPN 176

Query: 95  GVVTWWYNKEDTELVVLFLGDTSK--GHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLD 152
           G        E     +   G            F               +   ++      
Sbjct: 177 GTWHEHGILESGTECIWQDGLDIPLTNCLEANFYEVHPNDYQTTDIPLNDSPLTYGGPAL 236

Query: 153 ENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNT 212
              +       +              EP  E     A   + +P D     G  +   N 
Sbjct: 237 LPQLDKWDKPYSPLLKYSW-------EPTYEALLNYAKASDGSPYD-----GLILRYTNP 284

Query: 213 KNLPLVGE-VGCGADLVRLDGKAMCSPGFSCD----SALQVTYIVRGSGRAQIVGPDGKR 267
           +        +G    ++R        PG        +   +  + +G G + +    GKR
Sbjct: 285 QTGGHPMLTMGASMQMLR--------PGEHTKAHRHTGNVIYNVAKGQGYSIV---GGKR 333

Query: 268 VLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHL 312
                    ++F VP +         +            P+   L
Sbjct: 334 F---DWSEHDIFCVPAWTWHEHCNTQERDDACLFSFNDFPVMEKL 375

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Length = 105

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 30  PMLRQGNIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGD 88
           P+ +   +     AL        H    S +V Y L+G  V  +      E+   +  G 
Sbjct: 21  PVFQSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV-----GEEEALLAPGM 75

Query: 89  GIALPFGVVTWWYNKEDTELVVLFL 113
               P G      N+  +  ++L +
Sbjct: 76  AAFAPAGAPHGVRNESASPALLLVV 100

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* Length = 368

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 40/271 (14%), Positives = 71/271 (26%), Gaps = 45/271 (16%)

Query: 44  LEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK 103
           L     A  H        +V++G GV  +V  +     V + +GD +  P        N 
Sbjct: 110 LGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDP----VRMSRGDLLLTPGWCFHGHMND 165

Query: 104 EDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQ 163
            D  +  +   D     +       F +     +   +     R W              
Sbjct: 166 TDQPMAWIDGLDIPFSQQMDVGFFEFGSDRVTDYATPNFSRGERLW-------------- 211

Query: 164 TGKGIVKLDANAKLP---------EPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKN 214
              G+  L                E             +E            +  +N   
Sbjct: 212 CHPGLRPLSGLQNTVASPIGAYRWEFTDRALTEQLLLEDEGQPATVAPGHAAIRYVNPTT 271

Query: 215 LPLVGEVGCGADLVRLDGKAMCSPGFSCD----SALQVTYIVRGSGRAQIVGPDGKRVLE 270
              V       +  RL        G            V  +  G+G   +   +G+    
Sbjct: 272 GGDVMP-TLRCEFHRLR------AGTETATRNEVGSTVFQVFEGAGAVVM---NGETT-- 319

Query: 271 TTVKAGNLFIVPRFYVVSKIADPD-GLAWFS 300
             ++ G++F+VP +   S  A+    L  FS
Sbjct: 320 -KLEKGDMFVVPSWVPWSLQAETQFDLFRFS 349

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 35  GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF 94
                 +  +  NG   PH+ +     YVL+GS    +     + +   +  G+ I +P 
Sbjct: 37  DRFVLTEFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVL---PDQGRTEEVGPGEAIFIPR 93

Query: 95  GVVTWWYNKEDTELVVLFL 113
           G    +          L +
Sbjct: 94  GEPHGFVTGPGQTCRFLVV 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	100.0
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	100.0
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	100.0
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	100.0
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	100.0
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	100.0
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	100.0
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	100.0
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	100.0
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	100.0
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	100.0
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	100.0
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	100.0
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	100.0
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	100.0
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.97
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	99.96
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	99.96
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	99.96
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.95
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	99.95
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	99.95
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	99.95
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	99.95
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	99.95
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	99.94
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.94
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	99.94
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	99.93
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	99.93
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	99.91
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.91
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	99.89
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.87
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	99.85
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	99.84
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	99.83
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.81
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	99.79
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	99.77
1sef_A	274	Conserved hypothetical protein; structural genomic	99.77
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.76
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	99.75
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	99.73
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.72
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	99.71
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	99.7
1sfn_A	246	Conserved hypothetical protein; structural genomic	99.63
1dgw_Y	93	Canavalin; duplicated swiss-roll beta barrels, loo	99.55
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	99.53
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.4
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	99.32
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	99.32
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.32
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	99.31
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	99.31
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.3
1v70_A	105	Probable antibiotics synthesis protein; structural	99.3
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	99.28
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	99.26
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	99.26
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	99.25
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	99.25
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	99.25
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.24
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	99.24
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	99.23
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	99.23
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	99.23
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	99.22
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	99.2
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	99.19
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	99.17
4i4a_A	128	Similar to unknown protein; structural genomics, P	99.17
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	99.16
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	99.14
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	99.13
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	99.12
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	99.11
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	99.11
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	99.1
1sef_A	274	Conserved hypothetical protein; structural genomic	99.1
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	99.1
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.09
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	99.07
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.05
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.05
1sfn_A	246	Conserved hypothetical protein; structural genomic	99.03
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.03
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	99.03
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	99.03
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	99.02
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	99.0
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.98
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	98.98
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.98
1v70_A	105	Probable antibiotics synthesis protein; structural	98.97
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.96
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	98.95
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	98.94
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	98.94
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.91
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	98.9
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	98.89
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.89
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.89
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	98.84
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	98.83
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	98.83
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	98.83
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	98.81
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	98.81
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	98.79
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	98.78
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	98.78
4i4a_A	128	Similar to unknown protein; structural genomics, P	98.77
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	98.77
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	98.76
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	98.76
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	98.76
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	98.76
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	98.76
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	98.75
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	98.73
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	98.73
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	98.73
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	98.73
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.72
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.67
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	98.67
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	98.67
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	98.65
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	98.65
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	98.64
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.63
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	98.62
3bcw_A	123	Uncharacterized protein; structural genomics, join	98.6
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	98.57
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	98.52
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.51
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	98.51
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	98.49
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	98.48
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	98.48
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	98.47
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	98.47
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.46
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.41
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	98.39
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.38
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	98.36
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	98.36
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.36
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	98.3
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	98.27
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.26
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	98.24
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	98.18
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	98.17
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.17
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.16
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	98.11
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	98.11
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	98.06
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.06
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	98.06
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.01
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	98.0
3bcw_A	123	Uncharacterized protein; structural genomics, join	97.92
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	97.91
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	97.89
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	97.86
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	97.83
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	97.83
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	97.83
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	97.72
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	97.68
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	97.68
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	97.66
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	97.63
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	97.59
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	97.56
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	97.54
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	97.53
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	97.43
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	97.39
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	97.37
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.36
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	97.35
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	97.32
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	97.31
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	97.29
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	97.17
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	97.14
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	97.13
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	97.11
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	97.08
3uss_A	211	Putative uncharacterized protein; cupin, three his	96.98
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	96.96
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	96.94
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	96.9
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	96.83
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	96.81
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	96.79
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	96.79
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	96.76
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	96.72
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	96.71
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	96.68
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	96.65
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	96.62
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	96.54
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	96.46
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	96.45
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	96.44
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	96.43
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	96.25
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	96.25
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	96.2
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	96.15
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	96.08
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	96.08
4diq_A	489	Lysine-specific demethylase NO66; structural genom	96.06
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	96.03
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	96.0
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	95.99
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	95.98
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	95.97
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	95.91
4diq_A	489	Lysine-specific demethylase NO66; structural genom	95.87
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	95.83
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	95.75
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	95.72
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	95.7
3m3i_A	225	Putative uncharacterized protein; PFAM:PF06172, st	95.58
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	95.55
3loi_A	172	Putative uncharacterized protein; beta barrel, unk	95.47
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	95.45
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	95.39
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	95.38
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	95.07
3loi_A	172	Putative uncharacterized protein; beta barrel, unk	95.05
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	94.99
1xe7_A	203	YML079WP, hypothetical 22.5 kDa protein in TUB1-CP	94.96
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	94.96
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	94.89
3kv5_D	488	JMJC domain-containing histone demethylation prote	94.85
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	94.84
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	94.83
1xru_A	282	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer;	94.75
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	94.59
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	94.56
3kv9_A	397	JMJC domain-containing histone demethylation prote	94.49
3kv5_D	488	JMJC domain-containing histone demethylation prote	94.44
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	94.41
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	94.13
1znp_A	154	Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0,	94.05
3uss_A	211	Putative uncharacterized protein; cupin, three his	93.91
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	93.87
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	93.87
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	93.86
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	93.79
3kv9_A	397	JMJC domain-containing histone demethylation prote	93.74
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	93.66
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	93.65
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	93.2
3m3i_A	225	Putative uncharacterized protein; PFAM:PF06172, st	93.08
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	92.91
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	92.9
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	92.06
1znp_A	154	Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0,	91.94
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	91.68
1xe7_A	203	YML079WP, hypothetical 22.5 kDa protein in TUB1-CP	91.02
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	90.2
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	89.53
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	89.05
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	89.03
2rg4_A	216	Uncharacterized protein; rhodobacterales, oceanico	88.22
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	87.65
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	87.43
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	87.4
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	87.11
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	87.06
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	86.49
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	86.18
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	85.89
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	85.43
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	83.9
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	83.7
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	83.13
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	82.57
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	82.56
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	82.12
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	82.11
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	81.57
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	81.51
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	81.4
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	80.98
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	80.76
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	80.74
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	80.7
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	80.56
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	80.05

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=100.00  E-value=2.5e-79  Score=605.65  Aligned_cols=349  Identities=24%  Similarity=0.448  Sum_probs=321.3

Q ss_pred             cCCCccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCce----
Q 018395            4 DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEE----   79 (356)
Q Consensus         4 dl~~~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~----   79 (356)
                      ||+|.+|+.++++++|.++.|+..+ |.|++.++++++++|+||++.+||||++++++||++|+++++++.|+|.+    
T Consensus        11 ~l~a~ep~~~~~se~G~~e~w~~~~-~~L~~~gvs~~r~~i~p~Gl~lPh~~~a~e~~~V~~G~g~~G~v~pgc~et~~~   89 (466)
T 3kgl_A           11 QLNALEPSHVLKAEAGRIEVWDHHA-PQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQD   89 (466)
T ss_dssp             CCCCBCCSEEEEETTEEEEECCTTS-HHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCEEE
T ss_pred             cCCCCCCcceeeCCCcEEEEECCCC-hhhccCCeEEEEEEECCCCEeCCeeCCCCeEEEEEeCeEEEEEecCCCcchhhc
Confidence            8999999999999999999999876 89999999999999999999999999999999999999999999986533    


Q ss_pred             -------------------------------------------------------EEEEEcCCCEEEeCCCcEEEEEecC
Q 018395           80 -------------------------------------------------------KVVAIKKGDGIALPFGVVTWWYNKE  104 (356)
Q Consensus        80 -------------------------------------------------------~~~~l~~GDv~~iP~G~~H~~~N~g  104 (356)
                                                                             ++++|++||+++||+|++||++|+|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g  169 (466)
T 3kgl_A           90 SSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDG  169 (466)
T ss_dssp             CCSSCCCC-----------------------------------------CCEEESCEEEEETTEEEEECTTCEEEEECCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCC
Confidence                                                                   3459999999999999999999999


Q ss_pred             CCcEEEEEEeeCCCCCC--CCceeEEeecccc----------------cccccCcHHHHHhhccCCHHHHHHhhcccC-C
Q 018395          105 DTELVVLFLGDTSKGHK--AGEFTNFFLTGAN----------------GIFTGFSTEFVSRAWDLDENTVKTLVGKQT-G  165 (356)
Q Consensus       105 ~e~l~~l~i~~~~~~~~--pg~~~~f~lag~~----------------s~l~~~~~~vl~~af~~~~~~~~~l~~~q~-~  165 (356)
                      +++|+++|++++++..|  ++.+++|||||+.                |||++|++++|++|||++.++++||+++|+ .
T Consensus       170 ~e~L~~l~~~d~~n~~nQld~~~~~F~LaG~~~~~~~~~~~~~~~~~~ni~sGF~~e~La~Af~v~~e~~~kL~~~q~~~  249 (466)
T 3kgl_A          170 NQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNR  249 (466)
T ss_dssp             SSCEEEEEEEESSSTTCCSCSSCCEEESSCCBTTCCTTSTTCTTCCBCCGGGGSCHHHHHHHHTSCHHHHHHHTCTTCCS
T ss_pred             CCcEEEEEEEcCCCcccccCCceeeeEecCCCccccccccccccccCCCccccCCHHHHHHHhCCCHHHHHHHhccccCc
Confidence            99999999999876554  4678999999986                999999999999999999999999998886 6


Q ss_pred             ceEEEcCCCCcCCCCCccc------CC---------CceeeccC-CCCCcccCCCcEEEEeCCCCCCCccccCceeEEEE
Q 018395          166 KGIVKLDANAKLPEPKKEH------RD---------GMAFNCEE-APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVR  229 (356)
Q Consensus       166 ~~iv~~~~~~~~~~p~~~~------~~---------~~~~~l~~-~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~  229 (356)
                      +.||++++++..++|....      .+         .++|||.. .+++++++.||+++.+++.+||+|++|+||+++++
T Consensus       250 G~Iv~v~~~l~~~~p~~~~~~~~~~~~glee~~c~~r~~~Ni~~p~~~d~~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~  329 (466)
T 3kgl_A          250 GNIIRVQGPFSVIRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGS  329 (466)
T ss_dssp             CSEEECCSCCCCCCCCC--------------CCSSCCCEEETTCGGGEEEEETTTEEEEEECTTTCTTHHHHTCEEEEEE
T ss_pred             eeEEEecCcccccCCcccccccccccCCccccccceeccccccCcccCCcccCCCceEEEechhhCcccccCceeeEEEE
Confidence            7999999777777664321      12         34789985 67777789999999999999999999999999999


Q ss_pred             ecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCCCce
Q 018395          230 LDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIF  309 (356)
Q Consensus       230 l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~p~~  309 (356)
                      |+||||++|||||+ |+||+||++|+++++||+++|+++|+++|++|||||||+|++|++++++++++|++|+++++|+.
T Consensus       330 L~pGgm~~PHwHp~-A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v~P~G~~H~~~ag~e~~~~l~~f~s~np~~  408 (466)
T 3kgl_A          330 IRQNAMVLPQWNAN-ANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQI  408 (466)
T ss_dssp             EETTEEEEEEEESS-CCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSSEEEEEEEESSSSCCE
T ss_pred             eecCcEeeeeECCC-CCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEEEECCCCeEEEEcCCCCEEEEEEECCCCCcc
Confidence            99999999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccccccccCCCHHHHHHHcCCCHHHHHHHHhcCCCeEEecCC
Q 018395          310 THLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPP  354 (356)
Q Consensus       310 ~~laG~~s~l~~~p~~vl~~af~~~~~~~~~l~~~~~~~~~~~~p  354 (356)
                      .+|+|+++||++||++||+++|+++.+++++|++++++++|+.|+
T Consensus       409 ~~LaG~~s~~~~lP~eVla~aF~v~~~~v~~Lk~~q~e~~i~~~~  453 (466)
T 3kgl_A          409 NTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSS  453 (466)
T ss_dssp             EESSSTTCTGGGSCHHHHHHHHTCCHHHHHHHHHSCCCSSEEECC
T ss_pred             ccccchhhhhhhCCHHHHHHHhCcCHHHHHHHHhccCccEEECCC
Confidence            999999999999999999999999999999999999998888654

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=100.00  E-value=5e-79  Score=603.38  Aligned_cols=350  Identities=27%  Similarity=0.505  Sum_probs=316.1

Q ss_pred             cCCCccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCc-----
Q 018395            4 DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKE-----   78 (356)
Q Consensus         4 dl~~~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~-----   78 (356)
                      +|+|.+|+.++++++|.++.|+..+ +.|+|.++++++++|+||++.+||||+++|++||++|+++++++.++|.     
T Consensus        18 ~l~a~eP~~~i~se~G~~e~~d~~~-~~l~~~gvs~~R~~i~P~gl~~Ph~h~a~ei~yV~qG~g~~g~v~pgc~etf~~   96 (465)
T 3qac_A           18 RLTALEPTNRIQAERGLTEVWDSNE-QEFRCAGVSVIRRTIEPHGLLLPSFTSAPELIYIEQGNGITGMMIPGCPETYES   96 (465)
T ss_dssp             CCCCBCCCEEEEETTEEEEECCTTS-HHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCC--
T ss_pred             cCCCCCCccceeCCCcEEEEECCCC-hhhcccceEEEEEEEcCCcCcccEEcCCCEEEEEEECcEEEEEecCCCCceeec
Confidence            7999999999999999999999766 6899999999999999999999999999999999999999999988753     


Q ss_pred             --------------------------------eEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCC---CC
Q 018395           79 --------------------------------EKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHK---AG  123 (356)
Q Consensus        79 --------------------------------~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~---pg  123 (356)
                                                      +++.+|++||+++||+|++||++|+|+++|++++++++++..|   ++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v~~~d~~n~~nqld~~  176 (465)
T 3qac_A           97 GSQQFQGGEDERIREQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQLDKN  176 (465)
T ss_dssp             ----------------------------CCCCCCEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEECTTSTTCCSCSS
T ss_pred             chhccccccccccccccccccccccccccccccceeeecCCCEEEECCCCeEEEEcCCCCCEEEEEEEcCCCcccccccc
Confidence                                            2356999999999999999999999999999999999886554   25


Q ss_pred             ceeEEeeccc----------------------ccccccCcHHHHHhhccCCHHHHHHhhcccC-CceEEEcCCCCcCCCC
Q 018395          124 EFTNFFLTGA----------------------NGIFTGFSTEFVSRAWDLDENTVKTLVGKQT-GKGIVKLDANAKLPEP  180 (356)
Q Consensus       124 ~~~~f~lag~----------------------~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~-~~~iv~~~~~~~~~~p  180 (356)
                      .+++|||||+                      .+||++|++++|++|||++.++++||+++|+ .+.||+++++++.++|
T Consensus       177 ~~r~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~~~~~kl~~~q~~rG~Ivrv~~~l~~~~p  256 (465)
T 3qac_A          177 FPTRFYLAGKPQQEHSGEHQFSRESRRGERNTGNIFRGFETRLLAESFGVSEEIAQKLQAEQDDRGNIVRVQEGLHVIKP  256 (465)
T ss_dssp             SCCEEESSSCCCCSCC--------------CCCCGGGGSCHHHHHHHHTCCHHHHHHHHTTTCCSCSEEEC-CCCC----
T ss_pred             cceeEEecCCCccccccccccccccccccccccchhhcCCHHHHHHHhCCCHHHHHHhhhccccceeEEEecCcccccCC
Confidence            7899999997                      4899999999999999999999999998876 5789999877666655


Q ss_pred             Cccc-----------------------CCCceeeccC-CCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCee
Q 018395          181 KKEH-----------------------RDGMAFNCEE-APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMC  236 (356)
Q Consensus       181 ~~~~-----------------------~~~~~~~l~~-~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~  236 (356)
                      ....                       +..+++||.. .+++++++.||+++.+++.+||+|++||||+++++|+||||+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~nglee~~c~~~l~~ni~~p~~~dv~~~~gG~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm~  336 (465)
T 3qac_A          257 PSRAWEEREQGSRGSRYLPNGVEETICSARLAVNVDDPSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMM  336 (465)
T ss_dssp             ------------------------CTTTSCCEEETTCTTTCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEE
T ss_pred             cccchhhhhcccccccccCCCccccccceeccccccccccCCcccCCCceEEEeCHHHCCCccccceeEEEEEecCCcEe
Confidence            3210                       1134678874 778888899999999999999999999999999999999999


Q ss_pred             cccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCCCceecccccc
Q 018395          237 SPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSI  316 (356)
Q Consensus       237 ~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~p~~~~laG~~  316 (356)
                      +|||||+ |+||+||++|+++++||+++|+++|+++|++|||||||+|++|++++++++++|++|+++++|+..+|||++
T Consensus       337 ~PHwHp~-A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVfvvP~g~~h~~~ag~e~~~~l~f~~s~np~~~~LaG~~  415 (465)
T 3qac_A          337 APHYNLN-AHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVKQAFEDGFEWVSFKTSENAMFQSLAGRT  415 (465)
T ss_dssp             EEEEESS-CCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEESSTTCCEEESSSSS
T ss_pred             eeEECCC-CCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEEEECCCcEEEEEcCCCCeEEEEEecCCCCcccccccch
Confidence            9999999 999999999999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             ccccCCCHHHHHHHcCCCHHHHHHHHhcCCCeEEecCCC
Q 018395          317 GTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP  355 (356)
Q Consensus       317 s~l~~~p~~vl~~af~~~~~~~~~l~~~~~~~~~~~~p~  355 (356)
                      ++|++||++||++||+++.+++++|++++++++++.|+.
T Consensus       416 sv~~~ip~eVla~aF~v~~e~v~~Lk~~~~e~~i~~~~~  454 (465)
T 3qac_A          416 SAIRSLPIDVVSNIYQISREEAFGLKFNRPETTLFRSSG  454 (465)
T ss_dssp             BHHHHSCHHHHHHHHTCCHHHHHHHHHSCCSCSEECCCC
T ss_pred             hhhhhCCHHHHHHHhCCCHHHHHHHHhccCccEEECCcc
Confidence            999999999999999999999999999999998886654

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=100.00  E-value=1.4e-77  Score=597.20  Aligned_cols=350  Identities=25%  Similarity=0.463  Sum_probs=319.3

Q ss_pred             cCCCccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCce----
Q 018395            4 DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEE----   79 (356)
Q Consensus         4 dl~~~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~----   79 (356)
                      +|++.+|+.++++++|.++.|+. +.|.|++.++++++++|+||++.+||||+|++++||++|++.++++++++.+    
T Consensus        14 ~L~a~eP~~~~~se~G~~e~~~~-~~~~L~~~gvs~~R~~i~pggl~lPh~~~A~ei~~V~qG~g~~G~v~p~~~e~f~~   92 (496)
T 3ksc_A           14 RLDALEPDNRIESEGGLIETWNP-NNKQFRCAGVALSRATLQRNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPETFEE   92 (496)
T ss_dssp             CCCCBCCSEEEEETTEEEEECCT-TSHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC---
T ss_pred             cCCcCCCccccCCCCcEEEeccc-cchhhccCCceEEEEEecCCCEeCceEcCCCEEEEEEeCceEEEEEeCCCCccchh
Confidence            78999999999999999999985 5699999999999999999999999999999999999999999999987432    


Q ss_pred             -----------------EEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCC--CCceeEEeeccc-------
Q 018395           80 -----------------KVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHK--AGEFTNFFLTGA-------  133 (356)
Q Consensus        80 -----------------~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~--pg~~~~f~lag~-------  133 (356)
                                       ++..|++||||+||+|++||++|+|+++|++++++++++..|  ++.++.|||||+       
T Consensus        93 ~~~~~~~~~~~~~d~~qk~~~l~~GDV~viPaG~~h~~~N~G~~~lv~v~~~d~~n~~NQld~~~r~F~LaG~~~~~~~~  172 (496)
T 3ksc_A           93 PQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVFWMYNDQDTPVIAVSLTDIRSSNNQLDQMPRRFYLAGNHEQEFLQ  172 (496)
T ss_dssp             ------------CCCCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTGG
T ss_pred             hhhcccccccccccchheeeccCCCCEEEECCCCcEEEEcCCCCCEEEEEEeccCcccccCCCceeeeEecCCCcccccc
Confidence                             256999999999999999999999999999999999876655  678899999998       


Q ss_pred             ---------------ccccccCcHHHHHhhccCCHHHHHHhh---cccCCceEEEcCCCCcCCCCCcc------------
Q 018395          134 ---------------NGIFTGFSTEFVSRAWDLDENTVKTLV---GKQTGKGIVKLDANAKLPEPKKE------------  183 (356)
Q Consensus       134 ---------------~s~l~~~~~~vl~~af~~~~~~~~~l~---~~q~~~~iv~~~~~~~~~~p~~~------------  183 (356)
                                     .|+|++|++++|++|||++.++++||+   .+++.+.||+++++++.++|...            
T Consensus       173 ~~~~~~~~~~~~~~~~ni~sgF~~e~La~Af~v~~e~~~kl~~~~~~~~rg~IV~v~~~l~~~~P~~~~~~~~~~~~~~~  252 (496)
T 3ksc_A          173 YQHQQGGKQEQENEGNNIFSGFKRDFLEDAFNVNRHIVDRLQGRNEDEEKGAIVKVKGGLSIISPPEKQARHQRGSRQEE  252 (496)
T ss_dssp             GCC-----------CCSGGGGSCHHHHHHHHTCCHHHHHHHTTTTCCTTTCSEEECSSCCCCCCCC--------------
T ss_pred             ccccccccccccccCCCchhhcCHHHHHHHHCCCHHHHHHHHhhcccccCccEEEecCcccccCCchhhhchhhcccchh
Confidence                           699999999999999999999999999   44567899999987665554210            


Q ss_pred             --------------------------------------------------------cCCC---------ceeeccC-CCC
Q 018395          184 --------------------------------------------------------HRDG---------MAFNCEE-APL  197 (356)
Q Consensus       184 --------------------------------------------------------~~~~---------~~~~l~~-~~~  197 (356)
                                                                              ..++         +++||.. .++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nGlee~~c~~~l~~Ni~~p~~~  332 (496)
T 3ksc_A          253 DEDEEKQPRHQRGSRQEEEEDEDEERQPRHQRRRGEEEEEDKKERGGSQKGKSRRQGDNGLEETVCTAKLRLNIGPSSSP  332 (496)
T ss_dssp             ---------------------------------------------------------------CCSSSCCEEECSTTSCC
T ss_pred             hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCccccccchhhhccccccccC
Confidence                                                                    0122         3788884 678


Q ss_pred             CcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCc
Q 018395          198 DVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGN  277 (356)
Q Consensus       198 ~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gd  277 (356)
                      +++++.||+++.+++.+||+|++||||+++++|+||||++|||||+ |+||+||++|+++++||+++|+++|+++|++||
T Consensus       333 di~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~-A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GD  411 (496)
T 3ksc_A          333 DIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLN-ANSIIYALKGRARLQVVNCNGNTVFDGELEAGR  411 (496)
T ss_dssp             SEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESS-CCEEEEEEESEEEEEEECTTSCEEEEEEEETTC
T ss_pred             CcccCCCeeEEEeCHHHCccccccceeEEEEEeeCCeEECCeeCCC-CCEEEEEEeceEEEEEEeCCCcEEEEEEecCCe
Confidence            8888999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             EEEEcCCcEEEEeeCCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHHHHHHhcCCCeEEecCCC
Q 018395          278 LFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP  355 (356)
Q Consensus       278 v~vvP~g~~h~~~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~~~l~~~~~~~~~~~~p~  355 (356)
                      |||||+|++|++++++++++|++|+++++|+..+|+|.++||++||++||+++|+++.+++++|++++++.+|+.+|.
T Consensus       412 V~v~P~G~~H~~~a~~e~~~~l~f~~s~np~~~~LaG~~sv~~~~p~eVLa~aF~v~~~~v~~Lk~~q~e~~i~~~~~  489 (496)
T 3ksc_A          412 ALTVPQNYAVAAKSLSDRFSYVAFKTNDRAGIARLAGTSSVINNLPLDVVAATFNLQRNEARQLKSNNPFKFLVPARE  489 (496)
T ss_dssp             EEEECTTCEEEEEECSSEEEEEEEESSTTCCEEESSSTTCTTTTSCHHHHHHHHTCCHHHHHHHHHSCCCSSEECCCC
T ss_pred             EEEECCCCEEEEEeCCCCEEEEEEECCCCCccccccchhhhhhhCCHHHHHHHHCcCHHHHHHHHhcCCccEEeCCCC
Confidence            999999999999998889999999999999999999999999999999999999999999999999999888886654

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=100.00  E-value=9.4e-77  Score=589.94  Aligned_cols=350  Identities=27%  Similarity=0.519  Sum_probs=321.5

Q ss_pred             cCCCccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCc-----
Q 018395            4 DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKE-----   78 (356)
Q Consensus         4 dl~~~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~-----   78 (356)
                      +|+|.+|+.++++++|.++.|+. ++|.|++.++++++++|.||++.+||||++.+++||++|++.+++|.|+|-     
T Consensus        16 ~l~a~eP~~~i~se~G~~e~w~~-~~p~l~~~Gvs~~R~~i~p~Gl~lPh~~~a~el~yV~qG~g~~G~v~Pgcpet~~~   94 (531)
T 3fz3_A           16 QLQAREPDNRIQAEAGQIETWNF-NQGDFQCAGVAASRITIQRNGLHLPSYSNAPQLIYIVQGRGVLGAVFSGCPETFEE   94 (531)
T ss_dssp             CCCCBCCCEEEEETTEEEEECCT-TSHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEC
T ss_pred             ccCcCCCchhcccCCceEEEeCC-CChhhccCcceEEEEEecCCCEeCCccCCCCeEEEEEECcEEEEEEcCCCcccccc
Confidence            68999999999999999999996 479999999999999999999999999999999999999999999998752     


Q ss_pred             ----------------------------------------------------------------------------eEEE
Q 018395           79 ----------------------------------------------------------------------------EKVV   82 (356)
Q Consensus        79 ----------------------------------------------------------------------------~~~~   82 (356)
                                                                                                  ++++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~  174 (531)
T 3fz3_A           95 SQQSSQQGRQQEQEQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKTR  174 (531)
T ss_dssp             CCC-------------------------------------------------------------------CCSCEESCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceeee
Confidence                                                                                        3468


Q ss_pred             EEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCC--CCceeEEeeccc---------------------------
Q 018395           83 AIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHK--AGEFTNFFLTGA---------------------------  133 (356)
Q Consensus        83 ~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~--pg~~~~f~lag~---------------------------  133 (356)
                      .+++||++.||+|++||++|+|+++|++++++|+++..|  ++.++.|||||+                           
T Consensus       175 ~vr~GDviaiPaG~~~w~yN~G~~~l~iv~~~Dt~n~~NQld~~~r~F~LAGn~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (531)
T 3fz3_A          175 RIREGDVVAIPAGVAYWSYNDGDQELVAVNLFHVSSDHNQLDQNPRKFYLAGNPENEFNQQGQSQPRQQGEQGRPGQHQQ  254 (531)
T ss_dssp             EEETTEEEEECTTCCEEEECCSSSCEEEEEEEETTCTTCCSCSSCCEEESSSCCCCTTCC--------------------
T ss_pred             cccCCcEEEECCCCeEEEEeCCCceEEEEEEEccccccccCCCccceeEEcCCCcccccccccccccccccccccccccc
Confidence            899999999999999999999999999999999987776  788999999997                           


Q ss_pred             --------------ccccccCcHHHHHhhccCCHHHHHHhhcccC-CceEEEcCCCCcCCCCCcc---------------
Q 018395          134 --------------NGIFTGFSTEFVSRAWDLDENTVKTLVGKQT-GKGIVKLDANAKLPEPKKE---------------  183 (356)
Q Consensus       134 --------------~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~-~~~iv~~~~~~~~~~p~~~---------------  183 (356)
                                    .++|++|+.++|++|||++.++++||+++++ .+.|||+++++++++|...               
T Consensus       255 ~~~~~~~~~~~~~~~nifsGFs~e~La~A~~v~~~~a~kLq~~~~~rg~IVrv~~~l~~~~P~~~~~~~~~~~~~~~~~~  334 (531)
T 3fz3_A          255 PFGRPRQQEQQGNGNNVFSGFNTQLLAQALNVNEETARNLQGQNDNRNQIIQVRGNLDFVQPPRGRQEREHEERQQEQLQ  334 (531)
T ss_dssp             ------------CCSSGGGGSCHHHHHHHHTSCHHHHHHHHTSSCCSCSEEECSSSCCCSCCC-----------------
T ss_pred             cccccchhhhcccCCCeeecCCHHHHHHHHCCCHHHHHHHhcccccCceEEEecCCCcccCCchhhhhhhhccccccccc
Confidence                          3799999999999999999999999998876 6899999988887776431               


Q ss_pred             ----------cCCC---------ceeeccC-CCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeeccccccc
Q 018395          184 ----------HRDG---------MAFNCEE-APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCD  243 (356)
Q Consensus       184 ----------~~~~---------~~~~l~~-~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~  243 (356)
                                ..++         ++|||.. ..++++++.||+++.+++.+||+|++|+||+++++|+||||++|||||+
T Consensus       335 ~~~~~~~~~~~~nGleet~c~~rl~~Ni~~ps~~d~~n~~GG~v~~a~~~~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~  414 (531)
T 3fz3_A          335 QERQQQGEQLMANGLEETFCSLRLKENIGNPERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVN  414 (531)
T ss_dssp             -------------CGGGTGGGCCCEEECCCGGGCSEEETTTEEEEEESTTTCTHHHHHTCEEEEEEECTTCEEEEEEESS
T ss_pred             ccccccccccCCCCcccccccceeeeccCCcccCCcccCCCeEEEEeccccCCccccCceeEEEEEeecCccccceEcCC
Confidence                      0133         3899993 6667778999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCCCceeccccccccccCCC
Q 018395          244 SALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLS  323 (356)
Q Consensus       244 ~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p  323 (356)
                       |+||+||++|+++++|++++|+++++.+|++|||||||+|++|++++++++++|++|.++++|++.+|+|++++|++||
T Consensus       415 -A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v~P~G~~H~~~ag~e~l~flaF~ss~np~~~~LaG~~svf~~lP  493 (531)
T 3fz3_A          415 -AHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIVPQNHGVIQQAGNQGFEYFAFKTEENAFINTLAGRTSFLRALP  493 (531)
T ss_dssp             -CCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEESSTTCCEEESSSTTCHHHHSC
T ss_pred             -CCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEEECCCCeEEEecCCCCEEEEEEecCCCCcceeccchhHHHHhCC
Confidence             9999999999999999999999999999999999999999999999888899999998889999999999999999999


Q ss_pred             HHHHHHHcCCCHHHHHHHHhcCCCeEEecCCC
Q 018395          324 PSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP  355 (356)
Q Consensus       324 ~~vl~~af~~~~~~~~~l~~~~~~~~~~~~p~  355 (356)
                      ++||+++|+++.+++++|++++++++||.||.
T Consensus       494 ~eVLa~aF~v~~e~v~kLk~~~~es~i~~pp~  525 (531)
T 3fz3_A          494 DEVLANAYQISREQARQLKYNRQETIALSSSQ  525 (531)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHSCCCSSEECC--
T ss_pred             HHHHHHHhCcCHHHHHHHHhcCCCceEECCCC
Confidence            99999999999999999999999999999886

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=100.00  E-value=2.6e-75  Score=579.59  Aligned_cols=348  Identities=26%  Similarity=0.511  Sum_probs=313.8

Q ss_pred             cCCCccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCce----
Q 018395            4 DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEE----   79 (356)
Q Consensus         4 dl~~~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~----   79 (356)
                      +|++.+|+.++++++|.++.|+..+ |.|+|.++++++++|+||++++||||+++|++||++|++++++++++|.+    
T Consensus        31 ~l~a~eP~~~v~se~G~~~~~~~~~-~~l~~~gvs~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~  109 (459)
T 2e9q_A           31 NLRAQDPVRRAEAEAGFTEVWDQDN-DEFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQT  109 (459)
T ss_dssp             SCCCBCCCEEEEETTEEEEECCTTS-HHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEE
T ss_pred             cCCcCCCCceEecCCcEEEecCCCC-hhhccCceEEEEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhcc
Confidence            7999999999999999999998755 99999999999999999999999999999999999999999999988642    


Q ss_pred             -----------------EEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCC--CceeEEeeccc-------
Q 018395           80 -----------------KVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKA--GEFTNFFLTGA-------  133 (356)
Q Consensus        80 -----------------~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~p--g~~~~f~lag~-------  133 (356)
                                       ++++|++||+++||+|++||++|+|+++|+++|++++++..|+  +.+.+|||||.       
T Consensus       110 ~~~~~~~~~~~~~d~~q~~~~l~~GDv~~iPaG~~H~~~N~g~~~l~~l~~~d~~n~~nqld~~~~~F~LaG~~~~~~~~  189 (459)
T 2e9q_A          110 DLRRSQSAGSAFKDQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDPYLRKFYLAGRPEQVERG  189 (459)
T ss_dssp             CCC-------CCCEEECCCEEEETTEEEEECTTCCEEEEECSSSCEEEEEEEESSSTTCCSCSSCCEEESSSCCCCCSST
T ss_pred             chhhccccccccccccceeEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEecCCCcccccCcccceeeccCCccccchh
Confidence                             3579999999999999999999999999999999998765553  56889999985       


Q ss_pred             -----------------ccccccCcHHHHHhhccCCHHHHHHhhcccC-CceEEEcCCCCcCCCCCcc--c---------
Q 018395          134 -----------------NGIFTGFSTEFVSRAWDLDENTVKTLVGKQT-GKGIVKLDANAKLPEPKKE--H---------  184 (356)
Q Consensus       134 -----------------~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~-~~~iv~~~~~~~~~~p~~~--~---------  184 (356)
                                       .+||++||+++|++||+++.+++++|+++++ .++||+++++++...|...  .         
T Consensus       190 ~~~~~~~~~~~~~~~~~~nif~gf~~evLa~aF~v~~~~v~kL~~~~~~~G~Iv~~~~~l~~~~P~~~~~e~~~~~~~~~  269 (459)
T 2e9q_A          190 VEEWERSSRKGSSGEKSGNIFSGFADEFLEEAFQIDGGLVRKLKGEDDERDRIVQVDEDFEVLLPEKDEEERSRGRYIES  269 (459)
T ss_dssp             TCC------------CCCCTTTTSCHHHHHHHHTCCHHHHHHHHTTTCCSTTEEECCSSCCTTTTC--------------
T ss_pred             hhccccccccccccccccchhhcCCHHHHHhhcCCCHHHHHhhhhcccCCccEEEeCCcccccCCccchhhhcccccccc
Confidence                             3899999999999999999999999998876 5799999977665544210  0         


Q ss_pred             ----CC---------CceeeccC-CCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEE
Q 018395          185 ----RD---------GMAFNCEE-APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTY  250 (356)
Q Consensus       185 ----~~---------~~~~~l~~-~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~  250 (356)
                          .+         .+.+|+.. ..++++++.||+++.+++.+||+|++|+||+++++|.||||++|||||+ |+||+|
T Consensus       270 ~~~~~~g~~e~~~~~~l~~n~~~~~~~~~~~~~gG~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~pH~Hp~-A~Ei~y  348 (459)
T 2e9q_A          270 ESESENGLEETICTLRLKQNIGRSERADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVN-SHSVMY  348 (459)
T ss_dssp             ----------CGGGSCCEEECSTTSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESS-CCEEEE
T ss_pred             cccccCCccccccceeeeecccccccCCcccCCCeeEEEeccccCccccccccceEEEEeeCCcCccceECCC-CCEEEE
Confidence                01         24566663 6667678999999999999999999999999999999999999999999 999999


Q ss_pred             EEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHH
Q 018395          251 IVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAA  330 (356)
Q Consensus       251 v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~a  330 (356)
                      |++|+++++|++++|+++|+++|++|||||||+|++|++.|++++++|++++++++|+..+|+|+++||++||++||+++
T Consensus       349 V~~G~~~v~vv~~~g~~~~~~~l~~GDv~v~P~G~~H~~~ng~~~~~~l~~~~s~~~~~~~laG~~s~~~~~p~~Vla~a  428 (459)
T 2e9q_A          349 ATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVVIKRASDRGFEWIAFKTNDNAITNLLAGRVSQMRMLPLGVLSNM  428 (459)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEESSSSCCEEESSSSSSHHHHSCHHHHHHH
T ss_pred             EEeeEEEEEEEeCCCCEEEeeEEeCCcEEEECCCCEEEEEeCCCCeEEEEEecCCCCcceeecchhHHHHhCCHHHHHHH
Confidence            99999999999999999999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHhcCCCeEEecC
Q 018395          331 FNVPSDVEKQFRSKRANEAIFFP  353 (356)
Q Consensus       331 f~~~~~~~~~l~~~~~~~~~~~~  353 (356)
                      |+++.+++++|++++++..||.+
T Consensus       429 f~v~~~~v~~l~~~~~e~~i~~~  451 (459)
T 2e9q_A          429 YRISREEAQRLKYGQQEMRVLSP  451 (459)
T ss_dssp             HTCCHHHHHHHHHSCCSCSEECS
T ss_pred             HCcCHHHHHHHHhcCCccEEeCC
Confidence            99999999999999888875543

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=100.00  E-value=3.5e-71  Score=552.74  Aligned_cols=349  Identities=26%  Similarity=0.485  Sum_probs=312.6

Q ss_pred             cCCCccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCce----
Q 018395            4 DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEE----   79 (356)
Q Consensus         4 dl~~~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~----   79 (356)
                      ||++.+|+.++++++|.++.|+..+ |.|++.++++++++|+||++++||||+++|++||++|++++++++++|.+    
T Consensus        16 ~l~a~~P~~~v~se~G~~e~~~~~~-~~l~~~gvs~~r~~l~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~   94 (476)
T 1fxz_A           16 KLNALKPDNRIESEGGLIETWNPNN-KPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEE   94 (476)
T ss_dssp             CCCCBCCSCEEEETTEEEEECCTTS-HHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC---
T ss_pred             cCCCCCCceEEecCCceEEeeCCCC-hhhccCceEEEEEEEcCCCEecceecCCceEEEEEecEEEEEEEcCCCcchhhc
Confidence            7999999999999999999999766 89999999999999999999999999999999999999999999988752    


Q ss_pred             ------------------EEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCC--CceeEEeeccc------
Q 018395           80 ------------------KVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKA--GEFTNFFLTGA------  133 (356)
Q Consensus        80 ------------------~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~p--g~~~~f~lag~------  133 (356)
                                        ++++|++||+++||+|++||++|+|+++|++++++++++..|+  +.+.+|||||.      
T Consensus        95 ~~~~~~~~~~~~~~d~~qk~~~l~~GDvi~iPaG~~h~~~N~G~~~l~~i~~~d~~n~~nqld~~~~~F~LaG~~~~~~~  174 (476)
T 1fxz_A           95 PQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFL  174 (476)
T ss_dssp             ---------------CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTH
T ss_pred             cccccccccccccccccceEEEEeCCCEEEECCCCcEEEEeCCCCCEEEEEEecCCCcccccCCccceeeccCCcccccc
Confidence                              4689999999999999999999999999999999998766663  67899999984      


Q ss_pred             ------------------------ccccccCcHHHHHhhccCCHHHHHHhhcccC---CceEEEcCCCCcCCCCCc---c
Q 018395          134 ------------------------NGIFTGFSTEFVSRAWDLDENTVKTLVGKQT---GKGIVKLDANAKLPEPKK---E  183 (356)
Q Consensus       134 ------------------------~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~---~~~iv~~~~~~~~~~p~~---~  183 (356)
                                              .+||++||+++|++||+++.+++++|+++++   .+.||+++++++.+.|..   .
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~if~gf~~~vLa~af~v~~~~~~kl~~~~~~~~~g~Iv~v~~~l~~~~P~~~~~e  254 (476)
T 1fxz_A          175 KYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKPPTDEQQ  254 (476)
T ss_dssp             HHHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECSSCCCCCCC------
T ss_pred             ccccccccccccccccccccccccchhhhcCCHHHHHhhhCCCHHHHHhhhccccccccccEEEeCCcccccCCccchhh
Confidence                                    3899999999999999999999999998876   689999997765544420   0


Q ss_pred             --------------c--------------------CCC---------ceeeccC-CCCCcccCCCcEEEEeCCCCCCCcc
Q 018395          184 --------------H--------------------RDG---------MAFNCEE-APLDVDIKNGGRVVLLNTKNLPLVG  219 (356)
Q Consensus       184 --------------~--------------------~~~---------~~~~l~~-~~~~~~~~~gG~~~~~~~~~~p~l~  219 (356)
                                    .                    .++         +.+|+.. ..++++++.||+++++++.+||+|+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~e~~~~~~l~~ni~~~~~~~~~~~~gG~v~~~~~~~~P~L~  334 (476)
T 1fxz_A          255 QRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKSRRNGIDETICTMRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALS  334 (476)
T ss_dssp             ------------------------------------------CTTCCCEEECSSSSCCSEEETTTEEEEEECTTTSGGGT
T ss_pred             hccccchhhhhcccccccccccccccccccccccccCCccccccceeeeccccccccCCcccCCCeEEEEeccccCcccc
Confidence                          0                    122         4556663 5667778999999999999999999


Q ss_pred             ccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEE
Q 018395          220 EVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWF  299 (356)
Q Consensus       220 ~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~  299 (356)
                      ++++++++++|.||+|++||||++ |+||.||++|+++++|++++|+++++.+|++|||+|||+|++|++.|++++++|+
T Consensus       335 ~l~is~~~v~l~pGa~~~pH~Hp~-a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~viP~G~~H~~~ng~~~l~~l  413 (476)
T 1fxz_A          335 WLRLSAEFGSLRKNAMFVPHYNLN-ANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYV  413 (476)
T ss_dssp             TTTCCEEEEEECTTCEEEEEEETT-CCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEECSTTEEEE
T ss_pred             cCcceEEEEEecCCceecceECCC-CCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEEECCCCeEEEEeCCCCEEEE
Confidence            999999999999999999999999 9999999999999999999998999999999999999999999997788899999


Q ss_pred             EEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHHHHHHhcCCCeEEecCC
Q 018395          300 SIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPP  354 (356)
Q Consensus       300 ~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~~~l~~~~~~~~~~~~p  354 (356)
                      +|+++++|+..+|+|+++||++||++||+++|+++.+++++|++++++..||.||
T Consensus       414 ~f~~s~~p~~~~laG~~s~~~~~p~~Vla~af~~~~~~v~~l~~~~~e~~i~~p~  468 (476)
T 1fxz_A          414 SFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPFKFLVPPQ  468 (476)
T ss_dssp             EEESSSSCCEEESSSTTCTGGGSCHHHHHHHHTCCHHHHHHHHHSCCCSSEECCC
T ss_pred             EEECCCCCceeEccchhHHHHhCCHHHHHHHhCcCHHHHHHHHhhCCCcEEeCCc
Confidence            9999999999999999999999999999999999999999999998877765444

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=100.00  E-value=1.2e-70  Score=549.57  Aligned_cols=349  Identities=25%  Similarity=0.494  Sum_probs=310.2

Q ss_pred             cCCCccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCc-----
Q 018395            4 DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKE-----   78 (356)
Q Consensus         4 dl~~~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~-----   78 (356)
                      ||+|.+|+.++++++|.++.|+..+ |.|+|.++++++++|+||++.+||||++++++||++|+|+++++.++|.     
T Consensus        16 ~l~a~~p~~~~~se~G~~e~~~~~~-~~l~~~gvs~~r~~i~p~gl~lPh~~~a~~~~yV~~G~g~~g~v~pg~~et~~~   94 (510)
T 3c3v_A           16 RLNAQRPDNRIESEGGYIETWNPNN-QEFECAGVALSRLVLRRNALRRPFYSNAPQEIFIQQGRGYFGLIFPGCPSTYEE   94 (510)
T ss_dssp             CCCCBCCCEEEEETTEEEEECCTTS-HHHHHHTCEEEEEEECTTEEEEEEECSSCEEEEEEECCEEEEEECTTCCCCEEE
T ss_pred             cCCCCCchhhhccCCceEEEeCCCC-cccccCcEEEEEEEECCCCCccceecCCCeEEEEEeCEEEEEEEeCCCcccccc
Confidence            7999999999999999999999866 9999999999999999999999999999999999999999999998762     


Q ss_pred             ------------------------------eEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCC--Ccee
Q 018395           79 ------------------------------EKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKA--GEFT  126 (356)
Q Consensus        79 ------------------------------~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~p--g~~~  126 (356)
                                                    +++++|++||+++||+|++||++|+|+++|++|+++++++..+.  ..+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g~~~l~~v~~~d~~n~~nqld~~~r  174 (510)
T 3c3v_A           95 PAQQGRRYQSQRPPRRLQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVAVSLTDTNNNDNQLDQFPR  174 (510)
T ss_dssp             ECCC--------------------CEEEEESCCEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTBTTCCSCSCCC
T ss_pred             ccccccccccccccccccccccccccccccceEEEecCCCEEEECCCCCEEEEeCCCCCEEEEEEeCCCCcccccccccc
Confidence                                          13579999999999999999999999999999999998754442  2368


Q ss_pred             EEeeccc----------------------------------------------------------ccccccCcHHHHHhh
Q 018395          127 NFFLTGA----------------------------------------------------------NGIFTGFSTEFVSRA  148 (356)
Q Consensus       127 ~f~lag~----------------------------------------------------------~s~l~~~~~~vl~~a  148 (356)
                      +|||||+                                                          .+||++||+++|++|
T Consensus       175 ~F~LaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~sgF~~~~La~a  254 (510)
T 3c3v_A          175 RFNLAGNHEQEFLRYQQQSRQSRRRSLPYSPYSPQSQPRQEEREFSPRGQHSRRERAGQEEEHEGGNIFSGFTPEFLAQA  254 (510)
T ss_dssp             CEESSCCCCCTTGGGCC------------------------------------------------CCTGGGSCHHHHHHH
T ss_pred             eeEecCCcccccchhhhccccccccccccccccccccccccccccccccccccccccccccccccccceecCCHHHHHHH
Confidence            9999982                                                          379999999999999


Q ss_pred             ccCC-HHHHHHhhcccC---CceEEEcCCCCcCCCCCcc-----------------------------cCCC--------
Q 018395          149 WDLD-ENTVKTLVGKQT---GKGIVKLDANAKLPEPKKE-----------------------------HRDG--------  187 (356)
Q Consensus       149 f~~~-~~~~~~l~~~q~---~~~iv~~~~~~~~~~p~~~-----------------------------~~~~--------  187 (356)
                      ||++ .+++++|++.++   .+.||++++++...+|...                             ..++        
T Consensus       255 f~v~~~~~~~~l~~~~~~~~~g~Iv~v~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng~~e~~c~~  334 (510)
T 3c3v_A          255 FQVDDRQIVQNLRGENESEEQGAIVTVRGGLRILSPDRKRGADEEEEYDEDEYEYDEEDRRRGRGSRGSGNGIEETICTA  334 (510)
T ss_dssp             HTCCCHHHHHHHTTTTCCTTSCSEEECTTCCCCCCC-----------------------------------CTTTTGGGC
T ss_pred             hCCCHHHHHHHhhccccccccccEEEeCCcccccCCchhccccchhhhhhhhccccccccccccccccccCCccccccce
Confidence            9999 999999998776   6899999876655444210                             0022        


Q ss_pred             -ceeeccC-CCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCC
Q 018395          188 -MAFNCEE-APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG  265 (356)
Q Consensus       188 -~~~~l~~-~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g  265 (356)
                       +.+|+.. ..++++++.||+++++++.+||+|++++||+++++|.||+|++||||++ |+||+||++|+++++|++++|
T Consensus       335 ~l~~ni~~~~~~~~~~~~gG~v~~~~~~~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~-a~Ei~yVl~G~~~v~vv~~~G  413 (510)
T 3c3v_A          335 TVKKNIGRNRSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTN-AHSIIYALRGRAHVQVVDSNG  413 (510)
T ss_dssp             CCEEECSSCSCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESS-CCEEEEEEESEEEEEEECTTS
T ss_pred             eeeeccCccccCCcccCCCeEEEEeccccCcccccceEEEEEEEecCCceecceECCC-CCEEEEEEeCEEEEEEEeCCC
Confidence             4566663 5667778999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             ceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHHHHHHhcC
Q 018395          266 KRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKR  345 (356)
Q Consensus       266 ~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~~~l~~~~  345 (356)
                      +++++.+|++|||+|||+|++|++.|++++++|++|+++++|+..+|+|+++||++||++||+++|+++.+++++|++++
T Consensus       414 ~~~~~~~l~~GDv~viP~G~~H~~~Ng~e~l~~l~f~~s~~p~~~~LaG~~svf~~lp~eVla~aF~v~~e~v~~L~~~~  493 (510)
T 3c3v_A          414 NRVYDEELQEGHVLVVPQNFAVAGKSQSDNFEYVAFKTDSRPSIANLAGENSVIDNLPEEVVANSYGLPREQARQLKNNN  493 (510)
T ss_dssp             CEEEEEEEETTCEEEECTTCEEEEEECSSEEEEEEEESSSSCCEEESSSTTSTTTTSCHHHHHHHHTCCHHHHHHHHHSC
T ss_pred             CEEEeEEEcCCcEEEECCCCeEEEEeCCCCEEEEEEECCCCcceeecccHhHHHHhCCHHHHHHHHCcCHHHHHHHHhhC
Confidence            89999999999999999999999977878899999999999999999999999999999999999999999999999988


Q ss_pred             CCeEEecCC
Q 018395          346 ANEAIFFPP  354 (356)
Q Consensus       346 ~~~~~~~~p  354 (356)
                      ++..||.||
T Consensus       494 ~e~~i~~p~  502 (510)
T 3c3v_A          494 PFKFFVPPS  502 (510)
T ss_dssp             CCSSEECC-
T ss_pred             CCcEEECCc
Confidence            877655443

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=100.00  E-value=3.1e-70  Score=542.70  Aligned_cols=339  Identities=17%  Similarity=0.272  Sum_probs=296.3

Q ss_pred             cceeeCCCeEEEEeCCC--CCCCcccCc-eEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCC
Q 018395           11 KQVYGGNGGSYHAWCPN--ELPMLRQGN-IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKG   87 (356)
Q Consensus        11 ~~~~~~~~G~i~~~~~~--~~p~l~~~~-~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~G   87 (356)
                      ++++++++|+++.++..  +.|.+++.+ +++++++|+||++.+||||+++|++||++|+++++++++++. .+++|++|
T Consensus        57 ~~~i~~e~G~i~~l~~~~~~~~~l~~~g~~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~-~~~~l~~G  135 (445)
T 2cav_A           57 LTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLDQG  135 (445)
T ss_dssp             EEEEEETTEEEEEECCTTSSCSTTGGGTTEEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEETT
T ss_pred             CceEEcCCEEEEEEeccCcccccccccCcEEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCC-EEEEecCC
Confidence            45788899999997553  335788765 999999999999999997799999999999999999988765 67999999


Q ss_pred             CEEEeCCCcEEEEEecC-CCcEEEEEEeeCCCCCCCCceeEEeecccc---cccccCcHHHHHhhccCCHHHHHHhhc-c
Q 018395           88 DGIALPFGVVTWWYNKE-DTELVVLFLGDTSKGHKAGEFTNFFLTGAN---GIFTGFSTEFVSRAWDLDENTVKTLVG-K  162 (356)
Q Consensus        88 Dv~~iP~G~~H~~~N~g-~e~l~~l~i~~~~~~~~pg~~~~f~lag~~---s~l~~~~~~vl~~af~~~~~~~~~l~~-~  162 (356)
                      |++++|+|.+||++|+| +++++++++++++  ++||.+.+|||+|+.   +||++||++||+++|+++.+++++|+. +
T Consensus       136 Dv~~~P~G~~H~~~N~g~~~~l~~l~v~~~~--~~pg~~~~F~laG~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~~  213 (445)
T 2cav_A          136 DAIKIQAGTPFYLINPDNNQNLRILKFAITF--RRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQE  213 (445)
T ss_dssp             EEEEECTTCCEEEEECCSSCCEEEEEEEECC--SSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTTSC
T ss_pred             CEEEECCCCcEEEEECCCCCCEEEEEEeccC--CCCCceeeeeccCCCchhhhhhcCCHHHHHHHhCCCHHHHHhhhccc
Confidence            99999999999999998 7899999999976  679899999999874   999999999999999999999999995 5


Q ss_pred             cCCceEEEcCCCCcC---CCCCc-----ccCCCceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCC
Q 018395          163 QTGKGIVKLDANAKL---PEPKK-----EHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKA  234 (356)
Q Consensus       163 q~~~~iv~~~~~~~~---~~p~~-----~~~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~  234 (356)
                      |++++|+++++++..   ..++.     ......+|||.+++|++ ++++|+++.+++.+||+|+++|||+++++|+|||
T Consensus       214 ~~~g~Iv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~p~~-~~~~G~v~~~~~~~fP~L~~l~is~~~v~l~pg~  292 (445)
T 2cav_A          214 EQEGVIVKMPKDQIQEISKHAQSSSRKTLSSQDKPFNLRSRDPIY-SNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGA  292 (445)
T ss_dssp             CSSSSEEECCCC--------------------CCCEETTSSCCSE-ESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTE
T ss_pred             CCCCcEEEeCCcchhhhcccccccCCCCCCCcccceeccccCCCc-cCCCceEEEeChHHCcccccCCCceEEEEeeCCc
Confidence            567899999876431   11111     12235699999998876 6999999999999999999999999999999999


Q ss_pred             eecccccccCCeeEEEEEeceEEEEEEccCCc--------e--EEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcC
Q 018395          235 MCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK--------R--VLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITT  304 (356)
Q Consensus       235 ~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~--------~--~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~  304 (356)
                      |++|||||+ |+||+||++|+++++|++++|.        +  +++++|++|||||||||++|++.|+ ++++|++|.++
T Consensus       293 m~~PH~hp~-A~ei~~V~~G~~~v~vv~~~~~~~~~~~g~~~~~~~~~l~~GdV~vvP~g~~h~~~n~-~~~~~v~f~~~  370 (445)
T 2cav_A          293 LFVPHYNSR-ATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAA-SDLNMVGIGVN  370 (445)
T ss_dssp             EEEEEEESS-CEEEEEEEESCEEEEEEEC-----------CCEEEEEEECTTCEEEECTTCCEEEEES-SSEEEEEEEES
T ss_pred             eeeeEECCC-CcEEEEEEeeEEEEEEEeCCCcccccccCcceEEEEeEecCCcEEEEcCCcEEEEEcC-CCeEEEEEEcc
Confidence            999999999 9999999999999999999853        4  7999999999999999999999887 78999998754


Q ss_pred             C-CCceecccc-ccccccCCCHHHHHHHcCCCHHHHHHHHhcCCCeEEecCCC
Q 018395          305 P-NPIFTHLAG-SIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP  355 (356)
Q Consensus       305 ~-~p~~~~laG-~~s~l~~~p~~vl~~af~~~~~~~~~l~~~~~~~~~~~~p~  355 (356)
                      . +|..++||| ++++|++||++||+++|+++.+++++|++++++++++.+|.
T Consensus       371 ~~~~~~~~laG~~~sv~~~~p~~vla~af~v~~~~v~~l~~~~~e~~~~~~~~  423 (445)
T 2cav_A          371 AENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELLENQKESYFVDGQP  423 (445)
T ss_dssp             CTTCCEEESSSSTTBSGGGSCHHHHHHHSSSCHHHHHHHHHHCCSCSEEECC-
T ss_pred             CCCCCcEEcccchhhhhhhCCHHHHHHHHCcCHHHHHHHHhcCCccEEeCCch
Confidence            4 889999999 89999999999999999999999999999999998877653

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=100.00  E-value=6.6e-69  Score=530.11  Aligned_cols=340  Identities=18%  Similarity=0.298  Sum_probs=297.9

Q ss_pred             cccceeeCCCeEEEEeCC--CCCCCcccCc-eEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEc
Q 018395            9 LAKQVYGGNGGSYHAWCP--NELPMLRQGN-IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIK   85 (356)
Q Consensus         9 ~~~~~~~~~~G~i~~~~~--~~~p~l~~~~-~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~   85 (356)
                      .+++++++++|+++....  ...+.|++.+ +++++++|+||++.+||||+++|++||++|+++++++++++ ..+++|+
T Consensus        18 ~~~~~~~~e~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~-~~~~~l~   96 (416)
T 1uij_A           18 SFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDD-RDSYNLH   96 (416)
T ss_dssp             SEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSC-EEEEEEC
T ss_pred             cccceEEcCCEEEEEEeccCCccccccCcccEEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCC-CeEEEec
Confidence            345689999999998533  1236788876 99999999999999999669999999999999999998854 4569999


Q ss_pred             CCCEEEeCCCcEEEEEec-CCCcEEEEEEeeCCCCCCCCceeEEeecccc---cccccCcHHHHHhhccCCHHHHHHhh-
Q 018395           86 KGDGIALPFGVVTWWYNK-EDTELVVLFLGDTSKGHKAGEFTNFFLTGAN---GIFTGFSTEFVSRAWDLDENTVKTLV-  160 (356)
Q Consensus        86 ~GDv~~iP~G~~H~~~N~-g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~---s~l~~~~~~vl~~af~~~~~~~~~l~-  160 (356)
                      +||+++||+|.+||++|+ ++++|+++++++++  ++||.+.+|+|+|+.   +||++||++||++||+++.+++++|+ 
T Consensus        97 ~GDv~~iP~G~~H~~~N~gg~e~l~~l~~~~~~--~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~  174 (416)
T 1uij_A           97 PGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPV--NKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLF  174 (416)
T ss_dssp             TTEEEEECTTCEEEEEECCSSCCEEEEEEEEES--SBTTBCCEEESSCBSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHT
T ss_pred             CCCEEEECCCCeEEEEecCCCCCEEEEEEeccC--CCCCcceeeeecCCcccchhhhcCCHHHHHHHhCcCHHHHHhhhh
Confidence            999999999999999999 49999999999865  678889999999864   69999999999999999999999999 


Q ss_pred             ccc-----CCceEEEcCCCCcC--CC------CCcccCCCceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEE
Q 018395          161 GKQ-----TGKGIVKLDANAKL--PE------PKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADL  227 (356)
Q Consensus       161 ~~q-----~~~~iv~~~~~~~~--~~------p~~~~~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~  227 (356)
                      ++|     ++++|+++++++..  .+      +....+...+|||.++.|.+ ++.+|+++++++.+||+|+++++|+++
T Consensus       175 ~~~~~~~~~~g~Iv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~p~~-~~~~G~~~~~~~~~~P~L~~l~is~a~  253 (416)
T 1uij_A          175 GEEEEQRQQEGVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIY-SNNFGKFFEITPEKNPQLRDLDIFLSS  253 (416)
T ss_dssp             CTTCGGGSBSSSEEECCHHHHHHHTSSCBCCCGGGGGCSSSCEETTSSCCSE-ECSSEEEEEECTTTCHHHHHHTEEEEE
T ss_pred             ccccccccCcceEEEeCCcccchhhhcccccCCCCCCCcccceeccccCCCc-cCCCceEEEEChHHCccchhcCcceEE
Confidence            665     35899998754321  01      11122456899999888865 689999999999999999999999999


Q ss_pred             EEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCc-------------eEEEEEecCCcEEEEcCCcEEEEeeCCC
Q 018395          228 VRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK-------------RVLETTVKAGNLFIVPRFYVVSKIADPD  294 (356)
Q Consensus       228 v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~-------------~~~~~~l~~Gdv~vvP~g~~h~~~~~~~  294 (356)
                      ++|+||||++|||||+ |+||+||++|+++++|++++|.             ++++++|++|||||||+|++|++.|. +
T Consensus       254 ~~l~~g~~~~pH~h~~-A~Ei~~V~~G~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~l~~Gdv~vvP~g~~h~~~n~-~  331 (416)
T 1uij_A          254 VDINEGALLLPHFNSK-AIVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNAT-S  331 (416)
T ss_dssp             EEECTTEEEEEEEESS-CEEEEEEEESEEEEEEEEEC------------CCEEEEEEEEETTCEEEECTTCCEEEEES-S
T ss_pred             EEEcCCcEecceEcCC-CcEEEEEEeeEEEEEEEcCCCccccccccccccceEEEEEEecCCcEEEECCCCeEEEEcC-C
Confidence            9999999999999999 9999999999999999999872             58899999999999999999999887 7


Q ss_pred             CeEEEEEEcCC-CCceecccc-ccccccCCCHHHHHHHcCCCHHHHHHHHhcCCCeEEecCC
Q 018395          295 GLAWFSIITTP-NPIFTHLAG-SIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPP  354 (356)
Q Consensus       295 ~~~~~~~~~~~-~p~~~~laG-~~s~l~~~p~~vl~~af~~~~~~~~~l~~~~~~~~~~~~p  354 (356)
                      +++|++|++++ +|+.++||| +++||++||++||+++|+++.+++++|+++++++.++.+|
T Consensus       332 ~~~~l~f~~~~~~~~~~~laG~~~sv~~~~p~~vla~af~~~~~~v~~l~~~~~~~~~~~~~  393 (416)
T 1uij_A          332 NLNFLAFGINAENNQRNFLAGEKDNVVRQIERQVQELAFPGSAQDVERLLKKQRESYFVDAQ  393 (416)
T ss_dssp             SEEEEEEEETCTTCCEEESSSSTTBSGGGSCHHHHHHHSSSCHHHHHHHTTSCCSCSEEEC-
T ss_pred             CeEEEEEEcCCCCCcceecccchhhHHHhCCHHHHHHHHCcCHHHHHHHHhcCCccEEECCc
Confidence            89999998655 899999999 7999999999999999999999999999999888777554

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=100.00  E-value=4.5e-68  Score=526.04  Aligned_cols=339  Identities=19%  Similarity=0.312  Sum_probs=297.5

Q ss_pred             ccceeeCCCeEEEEeCC--CCCCCcccCc-eEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcC
Q 018395           10 AKQVYGGNGGSYHAWCP--NELPMLRQGN-IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKK   86 (356)
Q Consensus        10 ~~~~~~~~~G~i~~~~~--~~~p~l~~~~-~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~   86 (356)
                      .++++++++|+++.++.  .+.+.|++.+ +++++++|+||++++||||+++||+||++|+++++++++++ ..+++|++
T Consensus        31 ~~~~~~se~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~-~~~~~l~~  109 (434)
T 2ea7_A           31 FRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDS-RDSYILEQ  109 (434)
T ss_dssp             EEEEEEETTEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSC-EEEEEEET
T ss_pred             ccceEEcCCEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCC-CEEEEeCC
Confidence            34678899999999432  2447888876 99999999999999999669999999999999999998765 45689999


Q ss_pred             CCEEEeCCCcEEEEEecC-CCcEEEEEEeeCCCCCCCCceeEEeeccc---ccccccCcHHHHHhhccCCHHHHHHhh-c
Q 018395           87 GDGIALPFGVVTWWYNKE-DTELVVLFLGDTSKGHKAGEFTNFFLTGA---NGIFTGFSTEFVSRAWDLDENTVKTLV-G  161 (356)
Q Consensus        87 GDv~~iP~G~~H~~~N~g-~e~l~~l~i~~~~~~~~pg~~~~f~lag~---~s~l~~~~~~vl~~af~~~~~~~~~l~-~  161 (356)
                      ||++++|+|.+||++|+| +++|+++++++++  ++||.+.+|+|+|+   .+||++||++||++||+++.+++++|+ +
T Consensus       110 GDv~~iP~G~~H~~~N~g~~e~l~~l~~~~~s--~~pg~~~~f~l~g~~~~~~~~~~~~~~vLa~af~v~~~~v~~l~~~  187 (434)
T 2ea7_A          110 GHAQKIPAGTTFFLVNPDDNENLRIIKLAIPV--NNPHRFQDFFLSSTEAQQSYLRGFSKNILEASFDSDFKEINRVLFG  187 (434)
T ss_dssp             TEEEEECTTCEEEEEECCSSCCEEEEEEEEES--SBTTBCCEEECSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHTC
T ss_pred             CCEEEECCCccEEEEeCCCCCCeEEEEEecCC--CCCCceeeeeecCCcchhhhhhcCCHHHHHHHhCCCHHHHHhhhhc
Confidence            999999999999999998 8899999998876  67888999999986   369999999999999999999999999 5


Q ss_pred             cc----------CCceEEEcCCCCc---CCC-----CCcccCCCceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCc
Q 018395          162 KQ----------TGKGIVKLDANAK---LPE-----PKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGC  223 (356)
Q Consensus       162 ~q----------~~~~iv~~~~~~~---~~~-----p~~~~~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~  223 (356)
                      ++          ++++|+++++++.   ...     +....+...+|||.+++|++ ++++|+++++++.+||+|++||+
T Consensus       188 ~~~~~~~~~~~q~~g~Iv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~p~~-~~~gG~v~~~~~~~~P~L~~l~i  266 (434)
T 2ea7_A          188 EERQQQQGEESREEGVIVELKREQIQELMKHAKSSSRKELSSQDEPFNLRNSKPIY-SNKFGRWYEMTPEKNPQLKDLDV  266 (434)
T ss_dssp             C---------CCCSSSEEECCHHHHHHHHTTSBCCCSSCTTCSSSCEETTSSCCSE-EETTEEEEEECTTTCHHHHHHTE
T ss_pred             ccccccccccccccceEEECCcccChhhcccccccCCCCCCCcccceeeccCCCce-eCCCcEEEEEChhhCccccccCc
Confidence            43          4689999865432   011     11122345799999998876 68999999999999999999999


Q ss_pred             eeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCC----------c--eEEEEEecCCcEEEEcCCcEEEEee
Q 018395          224 GADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG----------K--RVLETTVKAGNLFIVPRFYVVSKIA  291 (356)
Q Consensus       224 s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g----------~--~~~~~~l~~Gdv~vvP~g~~h~~~~  291 (356)
                      |+++++|+||||++|||||+ |+||+||++|+++++|++++|          +  ++|+++|++|||||||+|++|++.|
T Consensus       267 s~a~v~l~pG~m~~pH~hp~-A~Ei~~V~~G~~~v~vv~~~g~~~~~~~~~~~~~r~~~~~l~~Gdv~vvP~g~~h~~~n  345 (434)
T 2ea7_A          267 FISSVDMKEGALLLPHYSSK-AIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINA  345 (434)
T ss_dssp             EEEEEEECTTEEEEEEEESS-CEEEEEEEESCEEEEEEEEEECCCCTTSCCCEEEEEEEEEECTTCEEEECTTCCEEEEE
T ss_pred             ceEEEEEcCCeeeccEEcCC-CCEEEEEEeeEEEEEEEecCccccccccccCcceEEEEEEecCCcEEEECCCCeEEEEc
Confidence            99999999999999999999 999999999999999999975          2  3889999999999999999999988


Q ss_pred             CCCCeEEEEEEcCC-CCceecccc-ccccccCCCHHHHHHHcCCCHHHHHHHHhcCCCeEEecCC
Q 018395          292 DPDGLAWFSIITTP-NPIFTHLAG-SIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPP  354 (356)
Q Consensus       292 ~~~~~~~~~~~~~~-~p~~~~laG-~~s~l~~~p~~vl~~af~~~~~~~~~l~~~~~~~~~~~~p  354 (356)
                      . ++++|++|.++. +++.++||| +++||++||++||+++|+++.+++++|++.+++++|+.++
T Consensus       346 ~-~~~~~v~f~~~~~~~~~~~laG~~~sv~~~~p~~vla~af~v~~~~v~~l~~~~~e~~~~~~~  409 (434)
T 2ea7_A          346 T-SNLNFFAFGINAENNRRNFLAGGKDNVMSEIPTEVLEVSFPASGKKVEKLIKKQSESHFVDAQ  409 (434)
T ss_dssp             S-SSEEEEEEEETCTTCCEEESSSSTTBGGGGSCHHHHHHHSSSCHHHHHHHHTTCCSCSEEECC
T ss_pred             C-CCeEEEEEECCCCCCCceecccchhhhhhhCCHHHHHHHHCcCHHHHHHHHhcCCccEEECCC
Confidence            7 789999987554 789999999 8999999999999999999999999999999888877553

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=100.00  E-value=7.8e-68  Score=520.40  Aligned_cols=338  Identities=18%  Similarity=0.295  Sum_probs=295.2

Q ss_pred             ccccceeeCCCeEEEEeCCCC--CCCccc-CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEE
Q 018395            8 KLAKQVYGGNGGSYHAWCPNE--LPMLRQ-GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAI   84 (356)
Q Consensus         8 ~~~~~~~~~~~G~i~~~~~~~--~p~l~~-~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l   84 (356)
                      ....+++++++|+++.|...+  .+.|+| .++++++++|+||++.+|||.+|+|++||++|++++++|++++. ++++|
T Consensus        12 ~~f~~~~~se~G~i~~l~~f~~~s~~l~~l~~~~l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~-~~~~l   90 (418)
T 3s7i_A           12 RRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNR-KSFNL   90 (418)
T ss_dssp             GGEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCE-EEEEE
T ss_pred             ccccceEEcCCcEEEEecccCCcchhcccccceEEEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCE-EEEEe
Confidence            446689999999999996422  367777 68999999999999999995599999999999999999999764 57999


Q ss_pred             cCCCEEEeCCCcEEEEEecC-CCcEEEEEEeeCCCCCCCCceeEEeecccc---cccccCcHHHHHhhccCCHHHHHHhh
Q 018395           85 KKGDGIALPFGVVTWWYNKE-DTELVVLFLGDTSKGHKAGEFTNFFLTGAN---GIFTGFSTEFVSRAWDLDENTVKTLV  160 (356)
Q Consensus        85 ~~GDv~~iP~G~~H~~~N~g-~e~l~~l~i~~~~~~~~pg~~~~f~lag~~---s~l~~~~~~vl~~af~~~~~~~~~l~  160 (356)
                      ++||+++||+|++||++|.+ ++.|+++++.+++  ++||.+..|||+|..   +||++||++||++||+++.+++++|+
T Consensus        91 ~~GDv~~~P~G~~h~~~N~g~~~~l~i~~l~~~s--~~pg~~~~f~laG~~~~~s~~~gf~~evLa~af~v~~~~v~kl~  168 (418)
T 3s7i_A           91 DEGHALRIPSGFISYILNRHDNQNLRVAKISMPV--NTPGQFEDFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVL  168 (418)
T ss_dssp             ETTEEEEECTTCEEEEEECCSSCCEEEEEEEEES--SBTTBCCEECSSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHT
T ss_pred             cCCCEEEECCCCeEEEEecCCCccEEEEEeecCc--CCCCccceeeccCCcchhHHhhcCCHHHHHHHHCcCHHHHHhhh
Confidence            99999999999999999965 5689999988876  579999999999874   79999999999999999999999999


Q ss_pred             cc---------------------cCCceEEEcCCCCc--CCCC------Ccc---cCCCceeeccCCCCCcccCCCcEEE
Q 018395          161 GK---------------------QTGKGIVKLDANAK--LPEP------KKE---HRDGMAFNCEEAPLDVDIKNGGRVV  208 (356)
Q Consensus       161 ~~---------------------q~~~~iv~~~~~~~--~~~p------~~~---~~~~~~~~l~~~~~~~~~~~gG~~~  208 (356)
                      ..                     |.++.|+++++++.  ..++      +..   ....++|||.+++|++ ++.+|+++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~q~~g~Iv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~nl~~~~p~~-~n~~G~~~  247 (418)
T 3s7i_A          169 LEENAGGEQEERGQRRWSTRSSENNEGVIVKVSKEHVEELTKHAKSVSKKGSEEEGDITNPINLREGEPDL-SNNFGKLF  247 (418)
T ss_dssp             TSCC--------------------CCCSEEECCHHHHHHHHTTCBC--------CTTCCCCEETTCSCCSE-EETTEEEE
T ss_pred             cccccccccccccccccccccccccCCceEEcChhhhhhccccccccCCCCcCcccCCCcccccccCCCce-eCCCCeEE
Confidence            43                     34688999976542  1111      111   1247899999999986 68899999


Q ss_pred             EeCCCCC-CCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCc---------------------
Q 018395          209 LLNTKNL-PLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK---------------------  266 (356)
Q Consensus       209 ~~~~~~~-p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~---------------------  266 (356)
                      .+++.+| |+|+++|||+++++|.||||++|||||+ |+||+||++|+++++|+++++.                     
T Consensus       248 ~~~~~~~~p~L~~~gis~~r~~l~pgg~~~PH~~p~-A~ei~yV~~G~g~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (418)
T 3s7i_A          248 EVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSK-AMVIVVVNKGTGNLELVAVRKEQQQRGRREEEEDEDEEEEGSN  326 (418)
T ss_dssp             EECSBTTBHHHHHHTCEEEEEEECTTEEEEEEEESS-CEEEEEEEECCEEEEEEEEEEC-------------------CC
T ss_pred             EechHHcchhhccCCeeEEEEEecCCceeCceecCC-CCEEEEEEeCeEEEEEEeCCCcccccccccccccccccccccc
Confidence            9999999 9999999999999999999999999999 9999999999999999998763                     


Q ss_pred             ---eEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEc-CCCCceeccccc-cccccCCCHHHHHHHcCCCHHHHHHH
Q 018395          267 ---RVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIIT-TPNPIFTHLAGS-IGTWKSLSPSVLEAAFNVPSDVEKQF  341 (356)
Q Consensus       267 ---~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~-~~~p~~~~laG~-~s~l~~~p~~vl~~af~~~~~~~~~l  341 (356)
                         ++++.+|++|||||||+|++||++++. +++|++|.+ +++|..++|||+ +++|++||++||++||+++.+++++|
T Consensus       327 ~~~~~~~~~l~~GDV~vvP~G~~~~~~~~~-~l~~v~f~~~~~~~~~~~LAG~~~sv~~~~~~evla~af~v~~~~v~~L  405 (418)
T 3s7i_A          327 REVRRYTARLKEGDVFIMPAAHPVAINASS-ELHLLGFGINAENNHRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKL  405 (418)
T ss_dssp             EEEEEEEEEECTTCEEEECTTCCEEEEESS-CEEEEEEEESCTTCCEEESSSSTTBHHHHSCHHHHHHHSSSCHHHHHHH
T ss_pred             ccceEEEeeeCCCCEEEECCCCEEEEECCC-CEEEEEEEcCCCCCcceEccCchhhhhhcCCHHHHHHHhCCCHHHHHHH
Confidence               578899999999999999999998754 599999865 448999999998 59999999999999999999999999


Q ss_pred             HhcCCCeEEe
Q 018395          342 RSKRANEAIF  351 (356)
Q Consensus       342 ~~~~~~~~~~  351 (356)
                      ++.++++.++
T Consensus       406 ~~~q~e~~~~  415 (418)
T 3s7i_A          406 IKNQKESHFV  415 (418)
T ss_dssp             HHTCCSCSEE
T ss_pred             HhcCCcceee
Confidence            9999888665

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=100.00  E-value=1.7e-65  Score=500.77  Aligned_cols=330  Identities=15%  Similarity=0.233  Sum_probs=281.6

Q ss_pred             ccceeeCCCeEEEEe---CCCCCCCcccCc-eEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEc
Q 018395           10 AKQVYGGNGGSYHAW---CPNELPMLRQGN-IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIK   85 (356)
Q Consensus        10 ~~~~~~~~~G~i~~~---~~~~~p~l~~~~-~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~   85 (356)
                      .++++++++|+++.+   +.. .|.|++.+ +++++++|+||++.+||||+++||+||++|++++++++++++ .+++|+
T Consensus        22 ~~~~~~~e~G~i~~l~~~~~~-~~~l~~~~~~s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~-~~~~l~   99 (397)
T 2phl_A           22 WNTLFKNQYGHIRVLQRFDQQ-SKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDR-REYFFL   99 (397)
T ss_dssp             EEEEEEETTEEEEEECCHHHH-CGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTE-EEEEEE
T ss_pred             ccceEEcCCEEEEEecccCCC-ChhhcccccEEEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCc-EEEEEC
Confidence            447899999999985   443 37899876 999999999999999999999999999999999999999876 479999


Q ss_pred             CCCE------EEeCCCcEEEEEecC-CCcEEEEEEeeCCCCCCCCceeEEeeccc---ccccccCcHHHHHhhccCCHHH
Q 018395           86 KGDG------IALPFGVVTWWYNKE-DTELVVLFLGDTSKGHKAGEFTNFFLTGA---NGIFTGFSTEFVSRAWDLDENT  155 (356)
Q Consensus        86 ~GDv------~~iP~G~~H~~~N~g-~e~l~~l~i~~~~~~~~pg~~~~f~lag~---~s~l~~~~~~vl~~af~~~~~~  155 (356)
                      +||+      ++||+|++||++|.| +++++++|+++++  ++| .+.+|+|+|.   .+||++||++||++||+++.++
T Consensus       100 ~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i~~~~~~--~~~-~~~~f~L~G~~~~~s~~~~~~~~vLa~af~v~~~~  176 (397)
T 2phl_A          100 TSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPV--NNP-QIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEE  176 (397)
T ss_dssp             ESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEES--SSS-SCCEEECCCBTTBCCGGGGSCHHHHHHHHTSCHHH
T ss_pred             CCCcccccceEEECCCCcEEEEeCCCCCCeEEEEeecCC--CCc-cceeeeccCCCchhHHhhcCCHHHHHHHhCCCHHH
Confidence            9999      999999999999998 7899999999876  345 6789999985   4799999999999999999999


Q ss_pred             HHHhh-ccc--CCceEEEcCCCCcCCCCCcccCCCceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecC
Q 018395          156 VKTLV-GKQ--TGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDG  232 (356)
Q Consensus       156 ~~~l~-~~q--~~~~iv~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~  232 (356)
                      +++|+ +++  +++.|+++++++..... ...++...+.+.++.|.+ ++++|+++++++.+      ++||+++++|+|
T Consensus       177 v~~l~~~~~~q~~~~Iv~~~~~~~~~~~-~~~~~~~~~~l~~~~p~~-~n~~G~~~~v~~~~------l~is~a~v~l~p  248 (397)
T 2phl_A          177 INRVLFEEEGQQEGVIVNIDSEQIKELS-KHAKSSSRKSLSKQDNTI-GNEFGNLTERTDNS------LNVLISSIEMEE  248 (397)
T ss_dssp             HHHHHTCSTTCBSSSEEECCTTTHHHHH-HHHHTC---------CEE-EETTEEEEEEEETT------TTEEEEEEEECT
T ss_pred             HHhhhhcccccccCceEEcCcccchhhh-ccCCCcccccccccCCcc-cCCCCeEEEEeecc------CCeeEEEEEEcC
Confidence            99999 443  47899999876431000 001122345677666654 79999999999987      789999999999


Q ss_pred             CCeecccccccCCeeEEEEEeceEEEEEEcc------CCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCC-
Q 018395          233 KAMCSPGFSCDSALQVTYIVRGSGRAQIVGP------DGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTP-  305 (356)
Q Consensus       233 g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~------~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~-  305 (356)
                      |||++||||++ |+||.||++|+++++|+++      +|+++++.+|++|||||||+|++|++.|.. +++|++|.++. 
T Consensus       249 G~~~~PH~h~~-A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~vvP~G~~h~~~n~~-~l~~l~f~~~s~  326 (397)
T 2phl_A          249 GALFVPHYYSK-AIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATS-NVNFTGFGINAN  326 (397)
T ss_dssp             TEEEEEEEESS-CEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESS-SEEEEEEEESCT
T ss_pred             CcEeeeeEcCC-CCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEEEECCCCeEEEEeCC-CeEEEEEECCCC
Confidence            99999999999 9999999999999999999      778899999999999999999999997764 89999986655 


Q ss_pred             CCceecccc-ccccccCCC-----HHHHHHHcCCCHHHHHHHHhcCCCeEEecCC
Q 018395          306 NPIFTHLAG-SIGTWKSLS-----PSVLEAAFNVPSDVEKQFRSKRANEAIFFPP  354 (356)
Q Consensus       306 ~p~~~~laG-~~s~l~~~p-----~~vl~~af~~~~~~~~~l~~~~~~~~~~~~p  354 (356)
                      +|+.++||| ++++|+++|     ++||+++|+++++++++|+++++++.|+.++
T Consensus       327 ~~~~~~laG~~~sv~~~~p~~~~~~eVla~af~v~~~~v~~l~~~~~e~~i~~~~  381 (397)
T 2phl_A          327 NNNRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSGSYFVDAH  381 (397)
T ss_dssp             TCCEEESSSSSSBHHHHHHTSTTHHHHHHHHSSSCHHHHHHHHTTCCCCSEEECC
T ss_pred             CCcceecccchhhHHhhCCCccchHHHHHHHhCcCHHHHHHHHhcCCccEEeCCC
Confidence            899999999 799999999     9999999999999999999998888666553

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=100.00  E-value=2.3e-45  Score=356.78  Aligned_cols=318  Identities=16%  Similarity=0.167  Sum_probs=264.1

Q ss_pred             eCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeC
Q 018395           15 GGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALP   93 (356)
Q Consensus        15 ~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP   93 (356)
                      ..++|+++.++..++|.+.  ++++.+++++||++..|||| +++|++||++|++++++++++++.+.+.|++||+++||
T Consensus        32 ~~~~G~~~~~~~~~~p~~~--~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip  109 (361)
T 2vqa_A           32 LYDGGTTKQVGTYNFPVSK--GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFP  109 (361)
T ss_dssp             EETTEEEEEESTTTCTTCC--SCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEEEC
T ss_pred             ecCCceEEEeChhhCcccc--ceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEEEC
Confidence            4689999999988888765  57889999999999999999 59999999999999999988775566899999999999


Q ss_pred             CCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEc--
Q 018395           94 FGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKL--  171 (356)
Q Consensus        94 ~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~--  171 (356)
                      +|.+|++.|.+++++++++++++....+.   ..|++   .+||+++|.++|+++|+++.+.+++|...+.  .|+..  
T Consensus       110 ~g~~H~~~n~~~~~~~~l~v~~~~~~~~~---~~~~~---~~~~~~~p~~vLa~~~~v~~~~~~~l~~~~~--~i~~~~~  181 (361)
T 2vqa_A          110 RGWGHSIEGIGPDTAKFLLVFNDGTFSEG---ATFSV---TDWLSHTPIAWVEENLGWTAAQVAQLPKKQV--YISSYGP  181 (361)
T ss_dssp             TTCEEEEEECSSSCEEEEEEESSTTCCTT---SSEEH---HHHHHTSCHHHHHHHHTCCHHHHTTSCSSCC--CEECSSC
T ss_pred             CCCeEEEEeCCCCCEEEEEEECCCCcccc---ceecH---hHHHHhCCHHHHHHHhCcCHHHHHhccccCc--eEEeCCC
Confidence            99999999999999999998876543332   23333   4899999999999999999999999987654  46521  


Q ss_pred             -CCCC---cCCCCCcccCCCceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCee
Q 018395          172 -DANA---KLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQ  247 (356)
Q Consensus       172 -~~~~---~~~~p~~~~~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~e  247 (356)
                       ....   ....|.......+.|++...++. ..+.+|+++.+.+.++|.+++  +++.++.|.||++..||||++ +.|
T Consensus       182 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~gg~~~~~~~~~~~~~~~--~~~~~~~l~pg~~~~~H~H~~-~~E  257 (361)
T 2vqa_A          182 ASGPLASATPQGQTAKIEVPHTHNLLGQQPL-VSLGGNELRLASAKEFPGSFN--MTGALIHLEPGAMRQLHWHPN-ADE  257 (361)
T ss_dssp             CCCCGGGCCCSSCCCBCCSCCEEECTTSCCS-EEETTEEEEEECTTTCTTSTT--CEEEEEEECTTCEEEEEECSS-CCE
T ss_pred             CCCccccccccCcCCCCCcceEeccccCCCc-ccCCCceEEEEehhhCcCccc--ceEEEEEECCCcccccccCCC-CCE
Confidence             1110   01112222234567777766664 367899999999999999875  779999999999999999998 999


Q ss_pred             EEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEEEEcCCCCceeccccccccccCCCHHH
Q 018395          248 VTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSV  326 (356)
Q Consensus       248 i~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~v  326 (356)
                      +.||++|++++++++++|+ .....|++||+++||+|.+|++.| ++++++++.+.++.+++...++   ++++++|++|
T Consensus       258 ~~~Vl~G~~~~~v~~~~g~-~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~v  333 (361)
T 2vqa_A          258 WQYVLDGEMDLTVFASEGK-ASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVVFNDGDYQSIDLS---TWLASNPSSV  333 (361)
T ss_dssp             EEEEEESCEEEEEECSTTC-EEEEEECTTCEEEECTTCEEEEECCSSSCEEEEEEESSSSCCCEEHH---HHHHTSCHHH
T ss_pred             EEEEEeCEEEEEEEcCCCc-EEEEEECCCCEEEECCCCeEEeEECCCCCEEEEEEECCCCcceeeHH---HHhhhCCHHH
Confidence            9999999999999998875 345789999999999999999854 7889999999998888877775   6899999999


Q ss_pred             HHHHcCCCHHHHHHHHhcCCCeEEe
Q 018395          327 LEAAFNVPSDVEKQFRSKRANEAIF  351 (356)
Q Consensus       327 l~~af~~~~~~~~~l~~~~~~~~~~  351 (356)
                      |+++|+++++++++|+++ .+.++.
T Consensus       334 l~~~f~~~~~~~~~l~~~-~~~~~~  357 (361)
T 2vqa_A          334 LGNTFQISPELTKKLPVQ-DTIFSL  357 (361)
T ss_dssp             HHHHHTCCHHHHTTSCCS-CCSEEC
T ss_pred             HHHHHCcCHHHHHhhhcc-CCcccc
Confidence            999999999999999855 445454

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=100.00  E-value=2.6e-39  Score=316.91  Aligned_cols=310  Identities=18%  Similarity=0.248  Sum_probs=253.4

Q ss_pred             eCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCC
Q 018395           15 GGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF   94 (356)
Q Consensus        15 ~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~   94 (356)
                      ..++|+++.++...+|.+.  ++.+.++++.||+...+|||.+.|++||++|++++.+++.+++...+.|++||++++|+
T Consensus        59 ~~~~G~~~~~~~~~lp~~~--~~~~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ip~  136 (385)
T 1j58_A           59 LEKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPS  136 (385)
T ss_dssp             EETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECT
T ss_pred             ccCCcEEEEeccccCcccC--ceEEEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEEECC
Confidence            3589999999998888776  78999999999999999999999999999999999998876665457999999999999


Q ss_pred             CcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCC
Q 018395           95 GVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDAN  174 (356)
Q Consensus        95 G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~  174 (356)
                      |.+|++.|.++ +++++++++...   ...+.+|.+   .+||+.+|.++|+++|+++.++++++...+.  .|+.....
T Consensus       137 g~~H~~~n~~~-~~~~~~v~~~~~---~~~~~~~~~---~~~~~~~p~evla~~~~vs~~~~~~l~~~~~--~i~~~~~p  207 (385)
T 1j58_A          137 GLPHSIQALEE-GAEFLLVFDDGS---FSENSTFQL---TDWLAHTPKEVIAANFGVTKEEISNLPGKEK--YIFENQLP  207 (385)
T ss_dssp             TCCEEEEEEEE-EEEEEEEESCTT---CCGGGEEEH---HHHHHTSCHHHHHHHHTCCTGGGTTSCSSCC--SEECCCCC
T ss_pred             CCeEEEEECCC-CEEEEEEECCCC---ccccchhhh---hhhhhcccHHHHHHHhCCCHHHHHhcccccc--eEeccCCC
Confidence            99999999874 588988887542   333345554   4899999999999999999999999877543  45533211


Q ss_pred             Cc-----CCCCCcccCCCceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEE
Q 018395          175 AK-----LPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVT  249 (356)
Q Consensus       175 ~~-----~~~p~~~~~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~  249 (356)
                      ..     ...+.......+.+++...++ + ...+|+++.+.+.+++..+  ++++..+.|.||+...+|||+. +.|+.
T Consensus       208 ~~l~~~~~~~~~~~~~~~~v~~~~~~~~-~-~~~~g~~~~~~~~~~~~~~--~~~~~~~~l~pG~~~~~h~H~~-~~E~~  282 (385)
T 1j58_A          208 GSLKDDIVEGPNGEVPYPFTYRLLEQEP-I-ESEGGKVYIADSTNFKVSK--TIASALVTVEPGAMRELHWHPN-THEWQ  282 (385)
T ss_dssp             CCHHHHCCCCTTCCCSSCSEEEGGGSCC-E-ECSSEEEEEESTTTSTTCC--SCEEEEEEECTTCEEEEEECSS-SCEEE
T ss_pred             CccccccccCCCCCCCCCeeeecccCCC-e-eCCCceEEEeecccCCccc--ceEEEEEEECCCcccCceeCCC-CCEEE
Confidence            00     011112223456788887776 3 4678999999999998754  4889999999999999999998 89999


Q ss_pred             EEEeceEEEEEEccCCc-eEEEEEecCCcEEEEcCCcEEEEe-eCCCCeEEEEEEcCCCCceeccccccccccCCCHHHH
Q 018395          250 YIVRGSGRAQIVGPDGK-RVLETTVKAGNLFIVPRFYVVSKI-ADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVL  327 (356)
Q Consensus       250 ~v~~G~~~~~iv~~~g~-~~~~~~l~~Gdv~vvP~g~~h~~~-~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl  327 (356)
                      ||++|++++++.+++|+ +  ...|++||+++||+|.+|++. .+++++++++++....+....+   .++|..+|++|+
T Consensus       283 ~Vl~G~~~~~i~~~~g~~~--~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~v~~~~~~~d~~~---~~~l~~~~~~v~  357 (385)
T 1j58_A          283 YYISGKARMTVFASDGHAR--TFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSL---NQWLAMLPETFV  357 (385)
T ss_dssp             EEEESEEEEEEEEETTEEE--EEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESSSSCCCEEH---HHHHHTSCHHHH
T ss_pred             EEEeCeEEEEEEcCCCcEE--EEEEcCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCccccCH---HHHHHhCCHHHH
Confidence            99999999999988874 4  458999999999999999984 5778999999987766544333   588999999999


Q ss_pred             HHHcCCCHHHHHHHHhcC
Q 018395          328 EAAFNVPSDVEKQFRSKR  345 (356)
Q Consensus       328 ~~af~~~~~~~~~l~~~~  345 (356)
                      +++|+++++++++|++.+
T Consensus       358 ~~~f~~~~~~~~~l~~~~  375 (385)
T 1j58_A          358 QAHLDLGKDFTDVLSKEK  375 (385)
T ss_dssp             HHHHTCCHHHHTTCCSSC
T ss_pred             HHHhCCCHHHHHhhhccC
Confidence            999999999999998653

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.97  E-value=3.7e-31  Score=232.61  Aligned_cols=161  Identities=20%  Similarity=0.361  Sum_probs=140.3

Q ss_pred             cccceeeCCCeEEEEeCC--CCCCCccc-CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEc
Q 018395            9 LAKQVYGGNGGSYHAWCP--NELPMLRQ-GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIK   85 (356)
Q Consensus         9 ~~~~~~~~~~G~i~~~~~--~~~p~l~~-~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~   85 (356)
                      ..++++++++|+++.++.  ...+.+.+ .++++.+++|+||++..||+++++|++||++|+++++++++++. ++++|+
T Consensus        10 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~-~~~~l~   88 (178)
T 1dgw_A           10 KFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTYKLD   88 (178)
T ss_dssp             GEEEEEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEEEEE
T ss_pred             hcccceEcCCCEEEEEcccCCcchhcCCcCcEEEEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCc-EEEEEC
Confidence            345678899999999544  11134444 47999999999999999994499999999999999999988764 568999


Q ss_pred             CCCEEEeCCCcEEEEEecCCC-cEEEEEEeeCCCCCCCCceeEEeeccc---ccccccCcHHHHHhhccCCHHHHHHhh-
Q 018395           86 KGDGIALPFGVVTWWYNKEDT-ELVVLFLGDTSKGHKAGEFTNFFLTGA---NGIFTGFSTEFVSRAWDLDENTVKTLV-  160 (356)
Q Consensus        86 ~GDv~~iP~G~~H~~~N~g~e-~l~~l~i~~~~~~~~pg~~~~f~lag~---~s~l~~~~~~vl~~af~~~~~~~~~l~-  160 (356)
                      +||+++||+|.+||+.|.+++ +++++++.+++  ++||.+..|||+|.   .+||++||++||+++|+++++++++|+ 
T Consensus        89 ~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~--~~~g~~~~~~l~g~~~~~~~~~~~p~~vla~af~v~~~~~~~l~~  166 (178)
T 1dgw_A           89 QGDAIKIQAGTPFYLINPDNNQNLRILKFAITF--RRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLL  166 (178)
T ss_dssp             TTEEEEECTTCCEEEEECCSSSCEEEEEEEECC--SSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHHHTT
T ss_pred             CCCEEEECCCCeEEEEeCCCCCCEEEEEEECCC--CCCCceEEeeccCCcCcchhhhhCCHHHHHHHHCcCHHHHHHHhc
Confidence            999999999999999999886 89999998876  78999999999998   799999999999999999999999999 


Q ss_pred             cccCCceEEEcC
Q 018395          161 GKQTGKGIVKLD  172 (356)
Q Consensus       161 ~~q~~~~iv~~~  172 (356)
                      ++|+++.|+|++
T Consensus       167 ~~~~~~~iv~~~  178 (178)
T 1dgw_A          167 QEEQEGVIVKMP  178 (178)
T ss_dssp             SCCSSSSEEECC
T ss_pred             CcCcCceEEEcC
Confidence            567789999975

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=99.96  E-value=5.2e-29  Score=246.36  Aligned_cols=157  Identities=16%  Similarity=0.251  Sum_probs=143.1

Q ss_pred             cccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCc-eEEEEEcC
Q 018395            9 LAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKE-EKVVAIKK   86 (356)
Q Consensus         9 ~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~-~~~~~l~~   86 (356)
                      ...+++.+.+|+++.+++.++|.|+..++++++++|.||++++|||| +|+||+||++|++++++++++++ ..+.+|++
T Consensus       295 ~~~d~~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~  374 (466)
T 3kgl_A          295 SNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQ  374 (466)
T ss_dssp             GGEEEEETTTEEEEEECTTTCTTHHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCceEEEechhhCcccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecC
Confidence            44578999999999999999999999999999999999999999999 99999999999999999998754 45678999


Q ss_pred             CCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCc
Q 018395           87 GDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGK  166 (356)
Q Consensus        87 GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~  166 (356)
                      |||++||+|++|++ |.+++++++++++++.   +|+   ..+|+|.++||+++|++||+++|+++.+++++|++++++.
T Consensus       375 GDV~v~P~G~~H~~-~ag~e~~~~l~~f~s~---np~---~~~LaG~~s~~~~lP~eVla~aF~v~~~~v~~Lk~~q~e~  447 (466)
T 3kgl_A          375 GQLLSIPQGFSVVK-RATSEQFRWIEFKTNA---NAQ---INTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIET  447 (466)
T ss_dssp             TCEEEECTTCEEEE-EECSSEEEEEEEESSS---SCC---EEESSSTTCTGGGSCHHHHHHHHTCCHHHHHHHHHSCCCS
T ss_pred             CcEEEECCCCeEEE-EcCCCCEEEEEEECCC---CCc---cccccchhhhhhhCCHHHHHHHhCcCHHHHHHHHhccCcc
Confidence            99999999999998 7788899999977643   564   5689998899999999999999999999999999999999


Q ss_pred             eEEEcC
Q 018395          167 GIVKLD  172 (356)
Q Consensus       167 ~iv~~~  172 (356)
                      +|+...
T Consensus       448 ~i~~~~  453 (466)
T 3kgl_A          448 TLTHSS  453 (466)
T ss_dssp             SEEECC
T ss_pred             EEECCC
Confidence            999754

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=99.96  E-value=3.1e-28  Score=242.46  Aligned_cols=156  Identities=19%  Similarity=0.294  Sum_probs=140.6

Q ss_pred             cccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCc-eEEEEEcC
Q 018395            9 LAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKE-EKVVAIKK   86 (356)
Q Consensus         9 ~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~-~~~~~l~~   86 (356)
                      ...+++.+.+|++..+++.++|.|+..++++++++|.||++++|||| +|+||+||++|++++++|+++++ ....+|++
T Consensus       330 ~~~di~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~  409 (496)
T 3ksc_A          330 SSPDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEA  409 (496)
T ss_dssp             SCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCeeEEEeCHHHCccccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecC
Confidence            44578999999999999999999999999999999999999999999 99999999999999999998754 34567999


Q ss_pred             CCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCc
Q 018395           87 GDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGK  166 (356)
Q Consensus        87 GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~  166 (356)
                      |||++||+|++|++.|. ++++++++++++   .+|+   ..+|+|..+||+++|++||+++|+++.+++++|+++|++.
T Consensus       410 GDV~v~P~G~~H~~~a~-~e~~~~l~f~~s---~np~---~~~LaG~~sv~~~~p~eVLa~aF~v~~~~v~~Lk~~q~e~  482 (496)
T 3ksc_A          410 GRALTVPQNYAVAAKSL-SDRFSYVAFKTN---DRAG---IARLAGTSSVINNLPLDVVAATFNLQRNEARQLKSNNPFK  482 (496)
T ss_dssp             TCEEEECTTCEEEEEEC-SSEEEEEEEESS---TTCC---EEESSSTTCTTTTSCHHHHHHHHTCCHHHHHHHHHSCCCS
T ss_pred             CeEEEECCCCEEEEEeC-CCCEEEEEEECC---CCCc---cccccchhhhhhhCCHHHHHHHHCcCHHHHHHHHhcCCcc
Confidence            99999999999998775 778999987754   3464   5689998899999999999999999999999999999999


Q ss_pred             eEEEc
Q 018395          167 GIVKL  171 (356)
Q Consensus       167 ~iv~~  171 (356)
                      +|+..
T Consensus       483 ~i~~~  487 (496)
T 3ksc_A          483 FLVPA  487 (496)
T ss_dssp             SEECC
T ss_pred             EEeCC
Confidence            99954

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=99.96  E-value=1.3e-28  Score=241.75  Aligned_cols=155  Identities=19%  Similarity=0.279  Sum_probs=139.2

Q ss_pred             ccceeeCCCeEEEEeCCCCC-CCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCC----------
Q 018395           10 AKQVYGGNGGSYHAWCPNEL-PMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEK----------   77 (356)
Q Consensus        10 ~~~~~~~~~G~i~~~~~~~~-p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~----------   77 (356)
                      .+|.+.+.+|++..+++.++ |.|++.++++++++|.||++.+|||| +|.||+||++|++++++++++|          
T Consensus       235 ~~p~~~n~~G~~~~~~~~~~~p~L~~~gis~~r~~l~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~~~~~  314 (418)
T 3s7i_A          235 GEPDLSNNFGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREE  314 (418)
T ss_dssp             SCCSEEETTEEEEEECSBTTBHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEEC---------
T ss_pred             CCCceeCCCCeEEEechHHcchhhccCCeeEEEEEecCCceeCceecCCCCEEEEEEeCeEEEEEEeCCCcccccccccc
Confidence            34568899999999999999 99999999999999999999999999 9999999999999999998876          


Q ss_pred             ---------------ceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeeccc-ccccccCc
Q 018395           78 ---------------EEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGA-NGIFTGFS  141 (356)
Q Consensus        78 ---------------~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~-~s~l~~~~  141 (356)
                                     +..+.+|++|||++||+|++||+.|.+  +++++++..++  .+|   ..+||||. +++|++||
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~l~~GDV~vvP~G~~~~~~~~~--~l~~v~f~~~~--~~~---~~~~LAG~~~sv~~~~~  387 (418)
T 3s7i_A          315 EEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASS--ELHLLGFGINA--ENN---HRIFLAGDKDNVIDQIE  387 (418)
T ss_dssp             ----------CCEEEEEEEEEECTTCEEEECTTCCEEEEESS--CEEEEEEEESC--TTC---CEEESSSSTTBHHHHSC
T ss_pred             ccccccccccccccceEEEeeeCCCCEEEECCCCEEEEECCC--CEEEEEEEcCC--CCC---cceEccCchhhhhhcCC
Confidence                           234689999999999999999999865  49998876544  456   48899998 59999999


Q ss_pred             HHHHHhhccCCHHHHHHhhcccCCceEEEc
Q 018395          142 TEFVSRAWDLDENTVKTLVGKQTGKGIVKL  171 (356)
Q Consensus       142 ~~vl~~af~~~~~~~~~l~~~q~~~~iv~~  171 (356)
                      ++||++||+++.+++++|+++|++.+|+.+
T Consensus       388 ~evla~af~v~~~~v~~L~~~q~e~~~~~~  417 (418)
T 3s7i_A          388 KQAKDLAFPGSGEQVEKLIKNQKESHFVSA  417 (418)
T ss_dssp             HHHHHHHSSSCHHHHHHHHHTCCSCSEEEC
T ss_pred             HHHHHHHhCCCHHHHHHHHhcCCcceeecC
Confidence            999999999999999999999999999864

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.95  E-value=8e-28  Score=211.32  Aligned_cols=160  Identities=18%  Similarity=0.192  Sum_probs=136.4

Q ss_pred             CCceeeccCCCCCcccCCCcEEEEeCC-----CCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEE
Q 018395          186 DGMAFNCEEAPLDVDIKNGGRVVLLNT-----KNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQI  260 (356)
Q Consensus       186 ~~~~~~l~~~~~~~~~~~gG~~~~~~~-----~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~i  260 (356)
                      +++.|++...++.+ .+.+|+++.+++     ..||.|++  +++++++|.||++.+|| |++ |.|+.||++|++++++
T Consensus         2 ~p~~f~~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~pg~~~~pH-h~~-a~E~~yVl~G~~~v~v   76 (178)
T 1dgw_A            2 NPYLFRSNKFLTLF-KNQHGSLRLLQRFNEDTEKLENLRD--YRVLEYCSKPNTLLLPH-HSD-SDLLVLVLEGQAILVL   76 (178)
T ss_dssp             CTTEECGGGEEEEE-EETTEEEEEECCTTSSCGGGGGGTT--EEEEEEEECTTEEEEEE-EES-SEEEEEEEESEEEEEE
T ss_pred             CCceechhhcccce-EcCCCEEEEEcccCCcchhcCCcCc--EEEEEEEecCCcEecCc-CCC-CCEEEEEEeEEEEEEE
Confidence            56889988877655 588999999888     56888774  88999999999999999 998 9999999999999999


Q ss_pred             EccCCceEEEEEecCCcEEEEcCCcEEEEee-CCC-CeEEEEE-EcCCCCc---eeccccc---cccccCCCHHHHHHHc
Q 018395          261 VGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPD-GLAWFSI-ITTPNPI---FTHLAGS---IGTWKSLSPSVLEAAF  331 (356)
Q Consensus       261 v~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~-~~~~~~~-~~~~~p~---~~~laG~---~s~l~~~p~~vl~~af  331 (356)
                      +++++.+  ..+|++||+++||+|.+|++.| +++ .++++++ .++++|+   ..+++|.   ++||+++|++||+++|
T Consensus        77 ~~~~~~~--~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v~~~~~~~g~~~~~~l~g~~~~~~~~~~~p~~vla~af  154 (178)
T 1dgw_A           77 VNPDGRD--TYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASY  154 (178)
T ss_dssp             EETTEEE--EEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHH
T ss_pred             EeCCCcE--EEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEEECCCCCCCceEEeeccCCcCcchhhhhCCHHHHHHHH
Confidence            9988755  4589999999999999999955 665 7888887 4555665   5568888   7999999999999999


Q ss_pred             CCCHHHHHHHH-hcCCCeEEec
Q 018395          332 NVPSDVEKQFR-SKRANEAIFF  352 (356)
Q Consensus       332 ~~~~~~~~~l~-~~~~~~~~~~  352 (356)
                      +++.+++++|+ .++++..|+.
T Consensus       155 ~v~~~~~~~l~~~~~~~~~iv~  176 (178)
T 1dgw_A          155 DSPYDEIEQTLLQEEQEGVIVK  176 (178)
T ss_dssp             TSCHHHHHHHTTSCCSSSSEEE
T ss_pred             CcCHHHHHHHhcCcCcCceEEE
Confidence            99999999999 4456666664

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=99.95  E-value=1e-27  Score=236.24  Aligned_cols=156  Identities=17%  Similarity=0.270  Sum_probs=139.6

Q ss_pred             cceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCc-----------
Q 018395           11 KQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKE-----------   78 (356)
Q Consensus        11 ~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~-----------   78 (356)
                      .+.+.+.+|++..+++.++|.|++.+++++++.|.||+++.|||| +|.||+||++|+++++++++++.           
T Consensus       223 ~p~~~~~~G~~~~~~~~~~P~L~~l~is~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~~~~~~~~~~~  302 (416)
T 1uij_A          223 NPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPL  302 (416)
T ss_dssp             CCSEECSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC------------C
T ss_pred             CCCccCCCceEEEEChHHCccchhcCcceEEEEEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCCcccccccccccc
Confidence            467899999999999999999999999999999999999999999 99999999999999999998762           


Q ss_pred             ---eEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecc-cccccccCcHHHHHhhccCCHH
Q 018395           79 ---EKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTG-ANGIFTGFSTEFVSRAWDLDEN  154 (356)
Q Consensus        79 ---~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag-~~s~l~~~~~~vl~~af~~~~~  154 (356)
                         ....+|++|||++||+|++||+.|.  +++.++++++++  ++|+   ..+||| ..+||+++|++||+++|+++.+
T Consensus       303 ~~~~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~l~f~~~~--~~~~---~~~laG~~~sv~~~~p~~vla~af~~~~~  375 (416)
T 1uij_A          303 EVQRYRAELSEDDVFVIPAAYPFVVNAT--SNLNFLAFGINA--ENNQ---RNFLAGEKDNVVRQIERQVQELAFPGSAQ  375 (416)
T ss_dssp             CEEEEEEEEETTCEEEECTTCCEEEEES--SSEEEEEEEETC--TTCC---EEESSSSTTBSGGGSCHHHHHHHSSSCHH
T ss_pred             ceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEEcCC--CCCc---ceecccchhhHHHhCCHHHHHHHHCcCHH
Confidence               3345999999999999999999998  579999988765  4564   678998 6899999999999999999999


Q ss_pred             HHHHhhcccCCceEEEcCC
Q 018395          155 TVKTLVGKQTGKGIVKLDA  173 (356)
Q Consensus       155 ~~~~l~~~q~~~~iv~~~~  173 (356)
                      ++++|+++|++.+|+....
T Consensus       376 ~v~~l~~~~~~~~~~~~~~  394 (416)
T 1uij_A          376 DVERLLKKQRESYFVDAQP  394 (416)
T ss_dssp             HHHHHTTSCCSCSEEEC--
T ss_pred             HHHHHHhcCCccEEECCcc
Confidence            9999999999889997653

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=99.95  E-value=1.2e-27  Score=236.67  Aligned_cols=157  Identities=18%  Similarity=0.237  Sum_probs=141.2

Q ss_pred             ccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCc-eEEEEEc
Q 018395            8 KLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKE-EKVVAIK   85 (356)
Q Consensus         8 ~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~-~~~~~l~   85 (356)
                      ....+++.+.+|++..+++.++|.|+..++++++++|.||+|++|||| +|+||+||++|+++++++++++. ..+.+|+
T Consensus       294 p~~~dv~~~~gG~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~  373 (465)
T 3qac_A          294 PSKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELS  373 (465)
T ss_dssp             TTTCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             cccCCcccCCCceEEEeCHHHCCCccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEec
Confidence            355688899999999999999999999999999999999999999999 99999999999999999998753 4466799


Q ss_pred             CCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCC
Q 018395           86 KGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTG  165 (356)
Q Consensus        86 ~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~  165 (356)
                      +|||++||+|++|++. .+++++++++++++   .+|+   ..+|||.++||+++|++||++||+++.+++++|++++++
T Consensus       374 ~GDVfvvP~g~~h~~~-ag~e~~~~l~f~~s---~np~---~~~LaG~~sv~~~ip~eVla~aF~v~~e~v~~Lk~~~~e  446 (465)
T 3qac_A          374 RGQLVVVPQNFAIVKQ-AFEDGFEWVSFKTS---ENAM---FQSLAGRTSAIRSLPIDVVSNIYQISREEAFGLKFNRPE  446 (465)
T ss_dssp             TTCEEEECTTCEEEEE-EEEEEEEEEEEESS---TTCC---EEESSSSSBHHHHSCHHHHHHHHTCCHHHHHHHHHSCCS
T ss_pred             CCeEEEECCCcEEEEE-cCCCCeEEEEEecC---CCCc---ccccccchhhhhhCCHHHHHHHhCCCHHHHHHHHhccCc
Confidence            9999999999999986 56788999987654   3564   667999899999999999999999999999999999999


Q ss_pred             ceEEEc
Q 018395          166 KGIVKL  171 (356)
Q Consensus       166 ~~iv~~  171 (356)
                      .+|+..
T Consensus       447 ~~i~~~  452 (465)
T 3qac_A          447 TTLFRS  452 (465)
T ss_dssp             CSEECC
T ss_pred             cEEECC
Confidence            898853

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=99.95  E-value=1.6e-27  Score=236.73  Aligned_cols=157  Identities=18%  Similarity=0.242  Sum_probs=141.0

Q ss_pred             cccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCce-EEEEEcC
Q 018395            9 LAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEE-KVVAIKK   86 (356)
Q Consensus         9 ~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~-~~~~l~~   86 (356)
                      ...+.+.+.+|++..+++.++|.|+..+++++++.|.||+++.|||| +|+||+||++|+++++++++++.. ...+|++
T Consensus       294 ~~~~~~~~~gG~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~  373 (459)
T 2e9q_A          294 ERADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVRE  373 (459)
T ss_dssp             SCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCeeEEEeccccCccccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeC
Confidence            34467889999999999999999999999999999999999999999 999999999999999999987643 2346999


Q ss_pred             CCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCc
Q 018395           87 GDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGK  166 (356)
Q Consensus        87 GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~  166 (356)
                      |||++||+|++|++.| +++++++++++++.   +|   ...+|+|..+||+++|++||+++|+++.+++++|++++++.
T Consensus       374 GDv~v~P~G~~H~~~n-g~~~~~~l~~~~s~---~~---~~~~laG~~s~~~~~p~~Vla~af~v~~~~v~~l~~~~~e~  446 (459)
T 2e9q_A          374 GQVLMIPQNFVVIKRA-SDRGFEWIAFKTND---NA---ITNLLAGRVSQMRMLPLGVLSNMYRISREEAQRLKYGQQEM  446 (459)
T ss_dssp             TCEEEECTTCEEEEEE-EEEEEEEEEEESSS---SC---CEEESSSSSSHHHHSCHHHHHHHHTCCHHHHHHHHHSCCSC
T ss_pred             CcEEEECCCCEEEEEe-CCCCeEEEEEecCC---CC---cceeecchhHHHHhCCHHHHHHHHCcCHHHHHHHHhcCCcc
Confidence            9999999999999999 67889999987653   45   47789998999999999999999999999999999998888


Q ss_pred             eEEEcC
Q 018395          167 GIVKLD  172 (356)
Q Consensus       167 ~iv~~~  172 (356)
                      +|+...
T Consensus       447 ~i~~~~  452 (459)
T 2e9q_A          447 RVLSPG  452 (459)
T ss_dssp             SEECSC
T ss_pred             EEeCCC
Confidence            888543

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=99.95  E-value=3.8e-27  Score=234.38  Aligned_cols=155  Identities=15%  Similarity=0.236  Sum_probs=138.4

Q ss_pred             cccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCC-ceEEEEEcC
Q 018395            9 LAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEK-EEKVVAIKK   86 (356)
Q Consensus         9 ~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~-~~~~~~l~~   86 (356)
                      ...+++.+.+|++..+++.+||.|+..++++++++|.||++++|||| +|+||+||++|+++++++++++ +..+.+|++
T Consensus       366 s~~d~~n~~GG~v~~a~~~~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~  445 (531)
T 3fz3_A          366 ERADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQ  445 (531)
T ss_dssp             GGCSEEETTTEEEEEESTTTCTHHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCeEEEEeccccCCccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecC
Confidence            44578889999999999999999999999999999999999999999 9999999999999999999865 345789999


Q ss_pred             CCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCc
Q 018395           87 GDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGK  166 (356)
Q Consensus        87 GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~  166 (356)
                      |||++||+|++|+..+ +++.++|+++ +++  .+|+   ..+|+|..+||+++|++||+++|+++.+++++|++++++.
T Consensus       446 GDV~v~P~G~~H~~~a-g~e~l~flaF-~ss--~np~---~~~LaG~~svf~~lP~eVLa~aF~v~~e~v~kLk~~~~es  518 (531)
T 3fz3_A          446 GQLFIVPQNHGVIQQA-GNQGFEYFAF-KTE--ENAF---INTLAGRTSFLRALPDEVLANAYQISREQARQLKYNRQET  518 (531)
T ss_dssp             TCEEEECTTCEEEEEE-EEEEEEEEEE-ESS--TTCC---EEESSSTTCHHHHSCHHHHHHHHTCCHHHHHHHHHSCCCS
T ss_pred             CeEEEECCCCeEEEec-CCCCEEEEEE-ecC--CCCc---ceeccchhHHHHhCCHHHHHHHhCcCHHHHHHHHhcCCCc
Confidence            9999999999998764 5778999864 443  4564   5589998899999999999999999999999999999998


Q ss_pred             eEEE
Q 018395          167 GIVK  170 (356)
Q Consensus       167 ~iv~  170 (356)
                      +|+.
T Consensus       519 ~i~~  522 (531)
T 3fz3_A          519 IALS  522 (531)
T ss_dssp             SEEC
T ss_pred             eEEC
Confidence            8884

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=99.95  E-value=4.3e-27  Score=232.74  Aligned_cols=158  Identities=16%  Similarity=0.307  Sum_probs=141.0

Q ss_pred             ccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCc----------
Q 018395           10 AKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKE----------   78 (356)
Q Consensus        10 ~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~----------   78 (356)
                      .++.+.+++|+++.+++.++|.|++.++++++++|.||+++.|||| +|.||+||++|+++++++++++.          
T Consensus       239 ~~p~~~~~gG~v~~~~~~~~P~L~~l~is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~~~~~~~~  318 (434)
T 2ea7_A          239 SKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESL  318 (434)
T ss_dssp             SCCSEEETTEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEEECCCCTTSCCCE
T ss_pred             CCCceeCCCcEEEEEChhhCccccccCcceEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecCccccccccccCc
Confidence            3467889999999999999999999999999999999999999999 99999999999999999998541          


Q ss_pred             ---eEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecc-cccccccCcHHHHHhhccCCHH
Q 018395           79 ---EKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTG-ANGIFTGFSTEFVSRAWDLDEN  154 (356)
Q Consensus        79 ---~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag-~~s~l~~~~~~vl~~af~~~~~  154 (356)
                         ....+|++|||++||+|++||+.|.  +++.+++++.++  .+++   ..+||| ..+||+++|++||+++|+++.+
T Consensus       319 ~~r~~~~~l~~Gdv~vvP~g~~h~~~n~--~~~~~v~f~~~~--~~~~---~~~laG~~~sv~~~~p~~vla~af~v~~~  391 (434)
T 2ea7_A          319 EVQRYRAELSEDDVFVIPAAYPVAINAT--SNLNFFAFGINA--ENNR---RNFLAGGKDNVMSEIPTEVLEVSFPASGK  391 (434)
T ss_dssp             EEEEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEETC--TTCC---EEESSSSTTBGGGGSCHHHHHHHSSSCHH
T ss_pred             ceEEEEEEecCCcEEEECCCCeEEEEcC--CCeEEEEEECCC--CCCC---ceecccchhhhhhhCCHHHHHHHHCcCHH
Confidence               2344999999999999999999998  469999988765  4553   678998 6899999999999999999999


Q ss_pred             HHHHhhcccCCceEEEcCCC
Q 018395          155 TVKTLVGKQTGKGIVKLDAN  174 (356)
Q Consensus       155 ~~~~l~~~q~~~~iv~~~~~  174 (356)
                      ++++|+++|++.+|+...++
T Consensus       392 ~v~~l~~~~~e~~~~~~~~~  411 (434)
T 2ea7_A          392 KVEKLIKKQSESHFVDAQPE  411 (434)
T ss_dssp             HHHHHHTTCCSCSEEECCCC
T ss_pred             HHHHHHhcCCccEEECCCch
Confidence            99999999998999976533

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=99.94  E-value=6.1e-27  Score=232.21  Aligned_cols=156  Identities=17%  Similarity=0.252  Sum_probs=139.6

Q ss_pred             ccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCC---------c-
Q 018395           10 AKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEK---------E-   78 (356)
Q Consensus        10 ~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~---------~-   78 (356)
                      .++.+.+++|++..+++.++|.|++.++++++++|.||++++|||| +|+||+||++|+++++++++++         + 
T Consensus       254 ~~p~~~~~~G~v~~~~~~~fP~L~~l~is~~~v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~~~~~~~~g~~~  333 (445)
T 2cav_A          254 RDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQL  333 (445)
T ss_dssp             SCCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC-----------CC
T ss_pred             cCCCccCCCceEEEeChHHCcccccCCCceEEEEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEeCCCcccccccCcce
Confidence            3467889999999999999999999999999999999999999999 9999999999999999999874         2 


Q ss_pred             -eEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecc-cccccccCcHHHHHhhccCCHHHH
Q 018395           79 -EKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTG-ANGIFTGFSTEFVSRAWDLDENTV  156 (356)
Q Consensus        79 -~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag-~~s~l~~~~~~vl~~af~~~~~~~  156 (356)
                       ..+.+|++|||++||+|++|++.|.  +++.++++..++  ++|+   ..+||| ..+||+++|++||+++|+++.+++
T Consensus       334 ~~~~~~l~~GdV~vvP~g~~h~~~n~--~~~~~v~f~~~~--~~~~---~~~laG~~~sv~~~~p~~vla~af~v~~~~v  406 (445)
T 2cav_A          334 RRYAATLSEGDIIVIPSSFPVALKAA--SDLNMVGIGVNA--ENNE---RNFLAGHKENVIRQIPRQVSDLTFPGSGEEV  406 (445)
T ss_dssp             EEEEEEECTTCEEEECTTCCEEEEES--SSEEEEEEEESC--TTCC---EEESSSSTTBSGGGSCHHHHHHHSSSCHHHH
T ss_pred             EEEEeEecCCcEEEEcCCcEEEEEcC--CCeEEEEEEccC--CCCC---cEEcccchhhhhhhCCHHHHHHHHCcCHHHH
Confidence             3578899999999999999999998  469999876644  4554   678998 789999999999999999999999


Q ss_pred             HHhhcccCCceEEEcC
Q 018395          157 KTLVGKQTGKGIVKLD  172 (356)
Q Consensus       157 ~~l~~~q~~~~iv~~~  172 (356)
                      ++|+++|++.+|+...
T Consensus       407 ~~l~~~~~e~~~~~~~  422 (445)
T 2cav_A          407 EELLENQKESYFVDGQ  422 (445)
T ss_dssp             HHHHHHCCSCSEEECC
T ss_pred             HHHHhcCCccEEeCCc
Confidence            9999999988998764

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.94  E-value=5.7e-26  Score=203.20  Aligned_cols=163  Identities=20%  Similarity=0.303  Sum_probs=142.9

Q ss_pred             CCcccCCCceeec-cCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEE
Q 018395          180 PKKEHRDGMAFNC-EEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRA  258 (356)
Q Consensus       180 p~~~~~~~~~~~l-~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~  258 (356)
                      |.....+++.|++ ..+++++.+..|+.++.++..++|.++++++++.++++.||++..||||++ +.|+.||++|++++
T Consensus        28 ~~~~~~~df~~~~~~~~~~~~~~~~G~~v~~~~~~~~p~l~~~~~~~~~~~l~pg~~~~~H~H~~-~~E~~~Vl~G~~~v  106 (201)
T 1fi2_A           28 PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPR-ATEIGMVMKGELLV  106 (201)
T ss_dssp             CGGGCCSCTTCCCTTSSCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTT-CCEEEEEEESEEEE
T ss_pred             cCcccccceEEeeeecCCCCccCCCCcEEEEEecccCCCcccCceEEEEEEECCCCCCCCeECCC-CCEEEEEEeCEEEE
Confidence            4444456789997 667776655668889999999999999999999999999999999999998 99999999999999


Q ss_pred             EEEccC--CceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEEEEcCCCCceeccccccccccC---CCHHHHHHHcC
Q 018395          259 QIVGPD--GKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFSIITTPNPIFTHLAGSIGTWKS---LSPSVLEAAFN  332 (356)
Q Consensus       259 ~iv~~~--g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~---~p~~vl~~af~  332 (356)
                      ++.+++  |.+++...|++||+++||+|.+|++ +.++++++++.++++++|+...++  .++++.   +|++||+++|+
T Consensus       107 ~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l~v~~~~~p~~~~~~--~~~~~~~~~~~~~vl~~af~  184 (201)
T 1fi2_A          107 GILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVP--LTLFGSDPPIPTPVLTKALR  184 (201)
T ss_dssp             EEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCCCEEHH--HHHHHCSSCCCHHHHHHHHT
T ss_pred             EEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCCCCeEehh--hHHhcCCCCCCHHHHHHHHC
Confidence            999765  2455678999999999999999999 457889999999999999988876  567776   99999999999


Q ss_pred             CCHHHHHHHHhcC
Q 018395          333 VPSDVEKQFRSKR  345 (356)
Q Consensus       333 ~~~~~~~~l~~~~  345 (356)
                      ++.+++++|+++.
T Consensus       185 ~~~~~v~~l~~~~  197 (201)
T 1fi2_A          185 VEAGVVELLKSKF  197 (201)
T ss_dssp             SCHHHHHHHHHHS
T ss_pred             cCHHHHHHHHHhh
Confidence            9999999999875

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=99.94  E-value=1.7e-25  Score=223.73  Aligned_cols=156  Identities=18%  Similarity=0.249  Sum_probs=139.4

Q ss_pred             cccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCc-eEEEEEcC
Q 018395            9 LAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKE-EKVVAIKK   86 (356)
Q Consensus         9 ~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~-~~~~~l~~   86 (356)
                      ...+++.+++|++..++..++|.|+..++++++++|+||++.+|||| +++||+||++|+++++++++++. ....+|++
T Consensus       344 ~~~~~~~~~gG~v~~~~~~~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~  423 (510)
T 3c3v_A          344 RSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQE  423 (510)
T ss_dssp             SCCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEET
T ss_pred             ccCCcccCCCeEEEEeccccCcccccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcC
Confidence            34467899999999999999999999899999999999999999999 89999999999999999988653 33456999


Q ss_pred             CCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCc
Q 018395           87 GDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGK  166 (356)
Q Consensus        87 GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~  166 (356)
                      ||+++||+|++|++.| ++++++++++..+.   +|+   ..+|+|..+||+++|.+||+++|+++.+++++|+.++++.
T Consensus       424 GDv~viP~G~~H~~~N-g~e~l~~l~f~~s~---~p~---~~~LaG~~svf~~lp~eVla~aF~v~~e~v~~L~~~~~e~  496 (510)
T 3c3v_A          424 GHVLVVPQNFAVAGKS-QSDNFEYVAFKTDS---RPS---IANLAGENSVIDNLPEEVVANSYGLPREQARQLKNNNPFK  496 (510)
T ss_dssp             TCEEEECTTCEEEEEE-CSSEEEEEEEESSS---SCC---EEESSSTTSTTTTSCHHHHHHHHTCCHHHHHHHHHSCCCS
T ss_pred             CcEEEECCCCeEEEEe-CCCCEEEEEEECCC---Ccc---eeecccHhHHHHhCCHHHHHHHHCcCHHHHHHHHhhCCCc
Confidence            9999999999999999 78889999877542   453   6789998999999999999999999999999999988888


Q ss_pred             eEEEc
Q 018395          167 GIVKL  171 (356)
Q Consensus       167 ~iv~~  171 (356)
                      +|+..
T Consensus       497 ~i~~p  501 (510)
T 3c3v_A          497 FFVPP  501 (510)
T ss_dssp             SEECC
T ss_pred             EEECC
Confidence            88854

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=99.93  E-value=2.5e-25  Score=222.05  Aligned_cols=155  Identities=18%  Similarity=0.262  Sum_probs=138.9

Q ss_pred             ccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCc-eEEEEEcCC
Q 018395           10 AKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKE-EKVVAIKKG   87 (356)
Q Consensus        10 ~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~-~~~~~l~~G   87 (356)
                      ..+++.+++|++..++..++|.|+..++++++++|+||++.+|||| +++|++||++|+++++++++++. ....+|++|
T Consensus       311 ~~~~~~~~gG~v~~~~~~~~P~L~~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~G  390 (476)
T 1fxz_A          311 SPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEG  390 (476)
T ss_dssp             CCSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETT
T ss_pred             cCCcccCCCeEEEEeccccCcccccCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCC
Confidence            3467899999999999999999999999999999999999999999 89999999999999999987653 334569999


Q ss_pred             CEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCce
Q 018395           88 DGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG  167 (356)
Q Consensus        88 Dv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~  167 (356)
                      |+++||+|++|++.| ++++++++++..+.   +|+   ..+|+|..+||+++|.+||+++|+++.+++++|++++++.+
T Consensus       391 Dv~viP~G~~H~~~n-g~~~l~~l~f~~s~---~p~---~~~laG~~s~~~~~p~~Vla~af~~~~~~v~~l~~~~~e~~  463 (476)
T 1fxz_A          391 RVLIVPQNFVVAARS-QSDNFEYVSFKTND---TPM---IGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPFKF  463 (476)
T ss_dssp             CEEEECTTCEEEEEE-CSTTEEEEEEESSS---SCC---EEESSSTTCTGGGSCHHHHHHHHTCCHHHHHHHHHSCCCSS
T ss_pred             CEEEECCCCeEEEEe-CCCCEEEEEEECCC---CCc---eeEccchhHHHHhCCHHHHHHHhCcCHHHHHHHHhhCCCcE
Confidence            999999999999999 78889999987542   453   56899989999999999999999999999999999888888


Q ss_pred             EEEc
Q 018395          168 IVKL  171 (356)
Q Consensus       168 iv~~  171 (356)
                      |+..
T Consensus       464 i~~p  467 (476)
T 1fxz_A          464 LVPP  467 (476)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            8854

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=99.93  E-value=8.2e-26  Score=220.64  Aligned_cols=149  Identities=17%  Similarity=0.261  Sum_probs=134.1

Q ss_pred             ceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcC------CC-ceEEEE
Q 018395           12 QVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLP------EK-EEKVVA   83 (356)
Q Consensus        12 ~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~------~~-~~~~~~   83 (356)
                      +.+.+++|+++.+++.+      .++++++++|.||++..|||| +|+||+||++|+++++++++      ++ +..+.+
T Consensus       220 p~~~n~~G~~~~v~~~~------l~is~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~  293 (397)
T 2phl_A          220 NTIGNEFGNLTERTDNS------LNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAE  293 (397)
T ss_dssp             CEEEETTEEEEEEEETT------TTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEE
T ss_pred             CcccCCCCeEEEEeecc------CCeeEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEE
Confidence            77899999999998865      789999999999999999999 99999999999999999997      33 566789


Q ss_pred             EcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecc-cccccccCc-----HHHHHhhccCCHHHHH
Q 018395           84 IKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTG-ANGIFTGFS-----TEFVSRAWDLDENTVK  157 (356)
Q Consensus        84 l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag-~~s~l~~~~-----~~vl~~af~~~~~~~~  157 (356)
                      |++||+++||+|++|++.|.+  +++++++..++  .+|+   ..+||| ..+||+++|     ++||+++|++++++++
T Consensus       294 l~~GDV~vvP~G~~h~~~n~~--~l~~l~f~~~s--~~~~---~~~laG~~~sv~~~~p~~~~~~eVla~af~v~~~~v~  366 (397)
T 2phl_A          294 LSKDDVFVIPAAYPVAIKATS--NVNFTGFGINA--NNNN---RNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVM  366 (397)
T ss_dssp             EETTCEEEECTTCCEEEEESS--SEEEEEEEESC--TTCC---EEESSSSSSBHHHHHHTSTTHHHHHHHHSSSCHHHHH
T ss_pred             ecCCCEEEECCCCeEEEEeCC--CeEEEEEECCC--CCCc---ceecccchhhHHhhCCCccchHHHHHHHhCcCHHHHH
Confidence            999999999999999999986  69999987765  4564   678998 689999999     9999999999999999


Q ss_pred             HhhcccCCceEEEcCC
Q 018395          158 TLVGKQTGKGIVKLDA  173 (356)
Q Consensus       158 ~l~~~q~~~~iv~~~~  173 (356)
                      +|+++|++.+|+...+
T Consensus       367 ~l~~~~~e~~i~~~~~  382 (397)
T 2phl_A          367 KLINKQSGSYFVDAHH  382 (397)
T ss_dssp             HHHTTCCCCSEEECC-
T ss_pred             HHHhcCCccEEeCCCc
Confidence            9999998889997643

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.91  E-value=2.4e-23  Score=201.51  Aligned_cols=229  Identities=18%  Similarity=0.162  Sum_probs=159.0

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      ..+.+..++|+||+...+|+|..+|++||++|++.++.++  +  +.+.+++||++++|+|..|++.|.++++++++++.
T Consensus        98 ~~l~~~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t~v~--g--~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l~v~  173 (354)
T 2d40_A           98 ATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVD--G--ERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGL  173 (354)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEET--T--EEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEE
T ss_pred             CcEEEEEEEECCCCCcCCeecCcceEEEEEEEEEEEEEEC--C--EEEEEcCCCEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            4678999999999999999998889999999999885453  3  34899999999999999999999999999998876


Q ss_pred             eCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceeeccC
Q 018395          115 DTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEE  194 (356)
Q Consensus       115 ~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~l~~  194 (356)
                      +..      .++  ++ + ..+...++.++...  ..+..+..++..    ..++..+.. .  .+.   ..-+.|++..
T Consensus       174 d~p------~~~--~l-~-~~~~~~~~~~~~~~--~~p~~~~~~~~~----~~~~p~~~~-~--~~~---sp~~~y~~~~  231 (354)
T 2d40_A          174 DLP------LVN--IL-G-CGFAEDYPEEQQPV--TRKEGDYLPRYA----ANMLPLRHQ-T--GNS---SPIFNYRYDR  231 (354)
T ss_dssp             CHH------HHH--HH-T-CCCEEECC--CCCC--CSCTTTHHHHHS----SSEECSSCC-C--CSS---CSCCEECHHH
T ss_pred             Cch------hHh--hc-C-ceeeecCccccCcC--cCCcchhhhhhc----cCCCCcccc-c--cCC---CcceeccHHH
Confidence            532      111  11 1 12233344443221  122222222221    123332211 0  000   1113444432


Q ss_pred             C-----------CCCcccCCCcEEEEeCCC-CCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEc
Q 018395          195 A-----------PLDVDIKNGGRVVLLNTK-NLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG  262 (356)
Q Consensus       195 ~-----------~~~~~~~~gG~~~~~~~~-~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~  262 (356)
                      .           +++  ...|+.+..+++. .++.+.+  |++..+.|.||++..||||+. + ||.||++|+++++|  
T Consensus       232 ~~~~l~~~~~~~~~~--~~~G~~~~~~np~t~~~~~~t--i~~~~~~l~pG~~~~~H~h~~-~-ev~~v~~G~g~~~v--  303 (354)
T 2d40_A          232 SREVLHDLTRLGDAD--EWDGYKMRYVNPVTGGYPMPS--MGAFLQLLPKGFASRVARTTD-S-TIYHVVEGSGQVII--  303 (354)
T ss_dssp             HHHHHHHHHTTSCCB--TTTBEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCBEESS-C-EEEEEEEEEEEEEE--
T ss_pred             HHHHHHhhhhccccC--CCCCeEEEEeCCCcCCCCCCc--ceeEEEEECCCCCCCceecCC-c-EEEEEEeCeEEEEE--
Confidence            1           222  2457788888854 6788877  557788999999999999997 6 99999999999998  


Q ss_pred             cCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          263 PDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       263 ~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                       +| +  +.++++||+++||++.+|++.| ++++.++++.
T Consensus       304 -~~-~--~~~~~~GD~~~vP~~~~H~~~n-~e~~~l~~~~  338 (354)
T 2d40_A          304 -GN-E--TFSFSAKDIFVVPTWHGVSFQT-TQDSVLFSFS  338 (354)
T ss_dssp             -TT-E--EEEEETTCEEEECTTCCEEEEE-EEEEEEEEEE
T ss_pred             -CC-E--EEEEcCCCEEEECCCCeEEEEe-CCCEEEEEEc
Confidence             33 3  3579999999999999999966 3678888885

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=99.89  E-value=8.1e-24  Score=160.40  Aligned_cols=78  Identities=13%  Similarity=0.218  Sum_probs=72.7

Q ss_pred             ceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCce
Q 018395          188 MAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKR  267 (356)
Q Consensus       188 ~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~  267 (356)
                      .+|||.+++|++ ++..|+++++++.+||+|++||||+++++|.+|||++|||||+ |+||+||++|+++++|||++|++
T Consensus         2 ~pfnl~~~~p~~-~n~~G~~~~~~~~~~P~Ln~lgls~~r~~l~~gg~~~PH~hpr-A~ei~~V~~G~~~v~~V~~~g~~   79 (79)
T 1dgw_X            2 KPFNLRSRDPIY-SNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSR-ATVILVANEGRAEVELVGLEQQQ   79 (79)
T ss_dssp             CCEETTSSCCSE-ECSSEEEEEECTTTCHHHHTTTEEEEEEEECTTCEEEEEEESS-CEEEEEEEESCEEEEEEEEC---
T ss_pred             CccccccCCCCc-cCCCCcEEEEChhhCcccCcCCcceEEEEEcCCcCcCCccCCC-CcEEEEEEeceEEEEEecCCCCC
Confidence            479999999997 6899999999999999999999999999999999999999999 99999999999999999999853

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.87  E-value=1.4e-21  Score=174.62  Aligned_cols=141  Identities=18%  Similarity=0.305  Sum_probs=121.4

Q ss_pred             eCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCC---CceEEEEEcCCCEE
Q 018395           15 GGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPE---KEEKVVAIKKGDGI   90 (356)
Q Consensus        15 ~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~---~~~~~~~l~~GDv~   90 (356)
                      ...|+.+..++..++|.+++.++++.++++.||++..|||| +++|++||++|++++++++.+   ++...+.|++||++
T Consensus        50 ~~~G~~v~~~~~~~~p~l~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~  129 (201)
T 1fi2_A           50 TPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETF  129 (201)
T ss_dssp             STTSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEE
T ss_pred             CCCCcEEEEEecccCCCcccCceEEEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEE
Confidence            34567788889889999999999999999999999999999 689999999999999998654   44446899999999


Q ss_pred             EeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeeccccccccc---CcHHHHHhhccCCHHHHHHhhccc
Q 018395           91 ALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTG---FSTEFVSRAWDLDENTVKTLVGKQ  163 (356)
Q Consensus        91 ~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~---~~~~vl~~af~~~~~~~~~l~~~q  163 (356)
                      +||+|.+|++.|.+++++++++++..   .+|+.+   .++  .++|+.   +++++|+++|+++.+++++|+++.
T Consensus       130 ~iP~g~~H~~~N~g~~~~~~l~v~~~---~~p~~~---~~~--~~~~~~~~~~~~~vl~~af~~~~~~v~~l~~~~  197 (201)
T 1fi2_A          130 VIPRGLMHFQFNVGKTEAYMVVSFNS---QNPGIV---FVP--LTLFGSDPPIPTPVLTKALRVEAGVVELLKSKF  197 (201)
T ss_dssp             EECTTCCEEEEECSSSCEEEEEEESS---SCCCCE---EHH--HHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHS
T ss_pred             EECCCCeEEEEeCCCCCEEEEEEECC---CCCCeE---ehh--hHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHhh
Confidence            99999999999999999999998754   356533   343  467886   999999999999999999998654

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=99.85  E-value=1.5e-19  Score=172.92  Aligned_cols=244  Identities=11%  Similarity=0.040  Sum_probs=147.9

Q ss_pred             cCceEEEEEEecCCCcccCeeeC-CCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYCD-SARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~-a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      +..+.+..+++.||+...+|||. .+|++||++|++++.+   ++  ..+.|++||++++|+|.+|.+.|.++ ++++++
T Consensus        43 ~~~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~---~~--~~~~l~~Gd~~~~p~~~~H~~~n~~~-~~~~~~  116 (337)
T 1y3t_A           43 GDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL---DG--ERYLLISGDYANIPAGTPHSYRMQSH-RTRLVS  116 (337)
T ss_dssp             TSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE---TT--EEEEECTTCEEEECTTCCEEEEECST-TEEEEE
T ss_pred             CCeEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE---CC--EEEEECCCCEEEECCCCcEEEEECCC-CeEEEE
Confidence            35789999999999999999995 9999999999999986   33  34899999999999999999999987 588888


Q ss_pred             EeeCCCCCCCCceeEEeecccccccccC-cHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCc-CCCC-Ccc---cCC
Q 018395          113 LGDTSKGHKAGEFTNFFLTGANGIFTGF-STEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAK-LPEP-KKE---HRD  186 (356)
Q Consensus       113 i~~~~~~~~pg~~~~f~lag~~s~l~~~-~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~-~~~p-~~~---~~~  186 (356)
                      ++...      .++.||......+-+.. |..+..   ..+.+.+.++.  ...+..+ ...... ...| ...   ...
T Consensus       117 ~~~p~------~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~l~~~a--~~~gv~~-~~~~~~~~~~~~~~~~~l~~~  184 (337)
T 1y3t_A          117 YTMKG------NVAHLYSVIGNPYDHAEHPPYASE---EVSNERFAEAA--AVATIVF-LDEAKPACSAKLAELTELPDG  184 (337)
T ss_dssp             EEETT------SSTHHHHHHSEECSCSSCCSSCCC---CCTTCTTGGGT--SSCEECC-CCCCCSSCSCEECCBCSCCSS
T ss_pred             EECCC------CHHHHHHHhCcccccccCCCCCCc---ccCHHHHHHhH--hhccEEE-cCCCCccccccchhhhcCCCC
Confidence            87643      33344432222222221 211000   11111112211  1111111 010000 0000 000   001


Q ss_pred             CceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecC-CCeecccccccCCeeEEEEEeceEEEEEEccCC
Q 018395          187 GMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDG-KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG  265 (356)
Q Consensus       187 ~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~-g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g  265 (356)
                      ..++-+...+...+...+..++.+...   ......+ ...+.+.| |+...+|||+. +.|+.||++|++++.+   ++
T Consensus       185 ~~~~v~r~~~~~~~~~~g~~~~~l~~~---~~~~~~~-~~~~~~~p~g~~~~~h~H~~-~~e~~~vl~G~~~~~i---~~  256 (337)
T 1y3t_A          185 AVPYVLESGEGDRLLTGDQLHRIVAAQ---KNTDGQF-IVVSSEGPKGDRIVDHYHEY-HTETFYCLEGQMTMWT---DG  256 (337)
T ss_dssp             SCCEEECTTCSEEEEETTEEEEEEECG---GGTTTSC-EEEEEEECSCCCCCCEECSS-CEEEEEEEESCEEEEE---TT
T ss_pred             CCCEEECCCCcCEEEECCcEEEEEecc---cccCCcE-EEEEEEcCCCCCCCCcCCCC-CcEEEEEEeCEEEEEE---CC
Confidence            112223222221112334455555431   1222223 34456656 67778999997 8999999999999988   23


Q ss_pred             ceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCC
Q 018395          266 KRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPN  306 (356)
Q Consensus       266 ~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~  306 (356)
                       +  ...|++||+++||++.+|+..+..+.+.++.+++...
T Consensus       257 -~--~~~l~~GD~~~ip~~~~H~~~n~~~~~~~l~v~~~~~  294 (337)
T 1y3t_A          257 -Q--EIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVLVPGL  294 (337)
T ss_dssp             -E--EEEECTTCEEEECTTCCEEEEECSSSEEEEEEEESST
T ss_pred             -E--EEEECCCCEEEECCCCeEEEEECCCCeEEEEEEcCcc
Confidence             3  3579999999999999999955333888888876554

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=99.84  E-value=2.5e-20  Score=180.46  Aligned_cols=154  Identities=18%  Similarity=0.252  Sum_probs=131.7

Q ss_pred             CceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCc
Q 018395          187 GMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK  266 (356)
Q Consensus       187 ~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~  266 (356)
                      .+.|++...++..  ..+|+++.++..+||.+.+  +++.++.|.||++..||||++ +.|+.||++|++++++++++|+
T Consensus        20 ~~~~~~~~~~~~~--~~~G~~~~~~~~~~p~~~~--~~~~~~~l~pg~~~~~H~H~~-~~E~~yVl~G~~~~~v~~~~g~   94 (361)
T 2vqa_A           20 AFTYAFSKTPLVL--YDGGTTKQVGTYNFPVSKG--MAGVYMSLEPGAIRELHWHAN-AAEWAYVMEGRTRITLTSPEGK   94 (361)
T ss_dssp             CSEECGGGSCCEE--ETTEEEEEESTTTCTTCCS--CEEEEEEECTTCEEEEEECTT-CCEEEEEEESEEEEEEECTTSC
T ss_pred             ceEEEcccCCcee--cCCceEEEeChhhCccccc--eeeEEEEEcCCCCCCceeCCC-CCEEEEEEEeEEEEEEEeCCCc
Confidence            4788998887753  5899999999999999885  689999999999999999998 9999999999999999998875


Q ss_pred             eEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHHHHHHhcC
Q 018395          267 RVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKR  345 (356)
Q Consensus       267 ~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~~~l~~~~  345 (356)
                      .. ...|++||+++||+|.+|++.| ++++++++.+++..++......+.+++++.+|.++|+++|+++.+.++++...+
T Consensus        95 ~~-~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~p~~vLa~~~~v~~~~~~~l~~~~  173 (361)
T 2vqa_A           95 VE-IADVDKGGLWYFPRGWGHSIEGIGPDTAKFLLVFNDGTFSEGATFSVTDWLSHTPIAWVEENLGWTAAQVAQLPKKQ  173 (361)
T ss_dssp             EE-EEEEETTEEEEECTTCEEEEEECSSSCEEEEEEESSTTCCTTSSEEHHHHHHTSCHHHHHHHHTCCHHHHTTSCSSC
T ss_pred             EE-EEEEcCCCEEEECCCCeEEEEeCCCCCEEEEEEECCCCccccceecHhHHHHhCCHHHHHHHhCcCHHHHHhccccC
Confidence            32 3689999999999999999955 678999999988776643212234699999999999999999999999988654


Q ss_pred             C
Q 018395          346 A  346 (356)
Q Consensus       346 ~  346 (356)
                      .
T Consensus       174 ~  174 (361)
T 2vqa_A          174 V  174 (361)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=99.83  E-value=4.2e-19  Score=171.50  Aligned_cols=255  Identities=11%  Similarity=-0.005  Sum_probs=151.8

Q ss_pred             CceEEEEEEecCCCccc---Ceee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEE
Q 018395           35 GNIGAAKLALEKNGFAL---PHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVV  110 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~---pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~  110 (356)
                      ..+.+. .++.|++...   +||| ..+|++||++|++++.+-..++....+.|++||++++|+|.+|++.|.+++. ++
T Consensus        46 ~~~~~~-~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~~  123 (350)
T 1juh_A           46 YAFTLM-GTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT-EM  123 (350)
T ss_dssp             TSCEEE-EEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE-EE
T ss_pred             CcEEEE-EEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC-EE
Confidence            356666 5666666554   8999 6999999999999998755334445689999999999999999999998875 88


Q ss_pred             EEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCH--HHHHHhhc-ccCCceEEEcCCCCcC--CC---CCc
Q 018395          111 LFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDE--NTVKTLVG-KQTGKGIVKLDANAKL--PE---PKK  182 (356)
Q Consensus       111 l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~--~~~~~l~~-~q~~~~iv~~~~~~~~--~~---p~~  182 (356)
                      ++++.+.      .++.||.......=+.+....+...|+.+.  ...+++.. .++.++++..+..+..  ..   +..
T Consensus       124 l~v~~p~------~~~~~f~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~  197 (350)
T 1juh_A          124 TGVIVPG------GFEDLFYYLGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTVNGTAPAN  197 (350)
T ss_dssp             EEEEESS------CTTHHHHHHSEECCCTTCCSSCCC--------------CGGGGGGTCEECTTCCCCCCCBTTEESSS
T ss_pred             EEEEcCc------cHHHHHHHhccccccccccccCCcccccCccccCHHHHHHHHHHcCCEeccccCChhHhhccccccC
Confidence            8876643      234444331110000011233344554444  55667665 3555666654432211  00   001


Q ss_pred             ccCCCceee-cc-CCCCCcccCCCcEEEE---------eCCCCCCCccccCceeEEEEecCC---CeecccccccCCeeE
Q 018395          183 EHRDGMAFN-CE-EAPLDVDIKNGGRVVL---------LNTKNLPLVGEVGCGADLVRLDGK---AMCSPGFSCDSALQV  248 (356)
Q Consensus       183 ~~~~~~~~~-l~-~~~~~~~~~~gG~~~~---------~~~~~~p~l~~l~~s~~~v~l~~g---~~~~PH~h~~~A~ei  248 (356)
                      ..-....++ |. +.+|.+..++.|....         ..-...+..+.+..++..+.+.++   +....|.|+  ..++
T Consensus       198 ~~w~~~~~~~l~~~~~p~~~~~~~g~~~~~~~~g~v~~~~l~~~~~~~~~~f~~~~i~~~~~~~g~~~~~h~~~--~~~~  275 (350)
T 1juh_A          198 TVWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDTNYTLSTISMSTTPSTVTVPTWSFP--GACA  275 (350)
T ss_dssp             SCSSSSCCCCCSSTTCCEEECTTCSCEEEECTTSCEEEEEEECHHHHGGGCEEEEEEEECCCCTTSCCCCBCCS--SCEE
T ss_pred             CccccCcccccCCCCCceEECCCccchhhcccCCcEEEEEEEeCCcCceeEEEEEEEeeccccCCCCCCcccCC--CcEE
Confidence            111123555 43 3445443344333221         111112333444578888888883   345555554  7899


Q ss_pred             EEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcC
Q 018395          249 TYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITT  304 (356)
Q Consensus       249 ~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~  304 (356)
                      +||++|++++++-+.   +  ..+|++||+++||+|.+|...+......++.+.+.
T Consensus       276 ~~vleG~~~i~i~g~---~--~~~l~~Gd~~~iPag~~h~~~~~~~~~~~l~~~~g  326 (350)
T 1juh_A          276 FQVQEGRVVVQIGDY---A--ATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSSG  326 (350)
T ss_dssp             EEEEESCEEEEETTS---C--CEEECTTCEEEECTTCCEEEEESSSSEEEEEEEES
T ss_pred             EEEEeeEEEEEECCe---E--EEEeCCCCEEEECCCCCEEEEecCCeEEEEEEecC
Confidence            999999999998752   2  25799999999999999999876555777777653

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.81  E-value=2e-18  Score=160.16  Aligned_cols=195  Identities=12%  Similarity=0.099  Sum_probs=136.1

Q ss_pred             cCceEEEEEEecCCCcccCeee--CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYC--DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      +..+.+..++|+||+....|+|  ..+|++||++|++++.+   ++  +.+.|++||.+++|++.+|.+.|.++++++++
T Consensus        56 ~~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~---~~--~~~~L~~Gd~~~~~~~~~H~~~N~~~~~~~~l  130 (261)
T 1rc6_A           56 GASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA---EG--KTFALSEGGYLYCPPGSLMTFVNAQAEDSQIF  130 (261)
T ss_dssp             TCSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE---TT--EEEEEETTEEEEECTTCCCEEEECSSSCEEEE
T ss_pred             CCcEEEEEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE---CC--EEEEECCCCEEEECCCCCEEEEeCCCCCEEEE
Confidence            4567888999999998876654  57899999999999987   33  35899999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceee
Q 018395          112 FLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFN  191 (356)
Q Consensus       112 ~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~  191 (356)
                      ++....  . +       +.|       .                      .+...+.+.+.                  
T Consensus       131 ~v~~~~--~-~-------~~g-------~----------------------~p~~~v~~~~~------------------  153 (261)
T 1rc6_A          131 LYKRRY--V-P-------VEG-------Y----------------------APWLVSGNASE------------------  153 (261)
T ss_dssp             EEEEEC--C-C-------CTT-------C----------------------CCCCEEEEGGG------------------
T ss_pred             EEEecc--c-c-------CCC-------C----------------------CCceEEcCHHH------------------
Confidence            886532  1 1       001       0                      01112332221                  


Q ss_pred             ccCCCCCcccCCCc-EEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEE
Q 018395          192 CEEAPLDVDIKNGG-RVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLE  270 (356)
Q Consensus       192 l~~~~~~~~~~~gG-~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~  270 (356)
                         .++......++ ..+.+...+    ....+.+..+.+.||+...+|||.. ..|+.||++|++++.+-   ++.   
T Consensus       154 ---~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~pG~~~~~h~H~~-~~E~~~Vl~G~~~~~i~---~~~---  219 (261)
T 1rc6_A          154 ---LERIHYEGMDDVILLDFLPKE----LGFDMNMHILSFAPGASHGYIETHV-QEHGAYILSGQGVYNLD---NNW---  219 (261)
T ss_dssp             ---SCCC-------CEEEECSCCS----TTCSEEEEEEEECTTCCBEEEEEES-SCEEEEEEESEEEEESS---SCE---
T ss_pred             ---CCcccCCCCcceEEEEecCcc----cCCceEEEEEEECCCCccCcccCCC-ceEEEEEEEeEEEEEEC---CEE---
Confidence               01110001111 223232221    1235778999999999999999987 88999999999998863   222   


Q ss_pred             EEecCCcEEEEcCCcEEEEe-eCC-CCeEEEEEEcC
Q 018395          271 TTVKAGNLFIVPRFYVVSKI-ADP-DGLAWFSIITT  304 (356)
Q Consensus       271 ~~l~~Gdv~vvP~g~~h~~~-~~~-~~~~~~~~~~~  304 (356)
                      ..|++||++++|+|.+|... .++ ++++++.+.+-
T Consensus       220 ~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l~~~d~  255 (261)
T 1rc6_A          220 IPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDC  255 (261)
T ss_dssp             EEEETTCEEEECSSEEEEEEEC----CEEEEEEEEC
T ss_pred             EEeCCCCEEEECCCCcEEeEeCCCCcCEEEEEEecC
Confidence            57999999999999999984 477 88999887643

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=99.79  E-value=4.4e-17  Score=158.61  Aligned_cols=231  Identities=16%  Similarity=0.136  Sum_probs=145.5

Q ss_pred             cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEe-cCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYN-KEDTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N-~g~e~l~~l~  112 (356)
                      ..++.+...+|.||....+|.|..+|++||++|+|....+  ++  +...+++||++++|+|..|.+.| .|+++++++|
T Consensus       120 t~~L~a~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~v--~G--~~~~~~~GD~i~~P~g~~H~~~N~~gde~l~~l~  195 (394)
T 3bu7_A          120 CGWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIV--DG--HKVELGANDFVLTPNGTWHEHGILESGTECIWQD  195 (394)
T ss_dssp             BTTBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEE--TT--EEEEECTTCEEEECTTCCEEEEECTTCCCEEEEE
T ss_pred             CCeeEEEEEEECCCCCcCCccCCcceEEEEEEeeEEEEEE--CC--EEEEEcCCCEEEECcCCCEEEEcCCCCCCEEEEE
Confidence            4578889999999999999999777999999999976444  33  34899999999999999999999 9999999999


Q ss_pred             EeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCC-ceee
Q 018395          113 LGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDG-MAFN  191 (356)
Q Consensus       113 i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~-~~~~  191 (356)
                      +.+..-.        .++ + ..++...+.+.-.  -.-+.....+..   ..+.+..++..     +... ..+ +.|.
T Consensus       196 v~d~Pl~--------~~l-~-~~f~e~~~~~~~~--~~~~~~~~~~~~---~~~~l~p~~~~-----~~~~-~sP~~~y~  254 (394)
T 3bu7_A          196 GLDIPLT--------NCL-E-ANFYEVHPNDYQT--TDIPLNDSPLTY---GGPALLPQLDK-----WDKP-YSPLLKYS  254 (394)
T ss_dssp             EECHHHH--------HHT-T-CCCEEECTTSSCC--CCCCTTHHHHHH---CSTTEEESSCC-----CCCS-SCSCCEEC
T ss_pred             cccchhh--------hhc-C-ccccccCcccccC--ccCCccchhhhh---cCccccccccc-----ccCC-CCCcEEec
Confidence            8763210        011 0 1112222211100  000000001000   01112222110     0000 011 1222


Q ss_pred             ccC-----------CCCCcccCCCc-EEEEeCCCCC-CCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEE
Q 018395          192 CEE-----------APLDVDIKNGG-RVVLLNTKNL-PLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRA  258 (356)
Q Consensus       192 l~~-----------~~~~~~~~~gG-~~~~~~~~~~-p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~  258 (356)
                      ...           ..++   ...| .+..+++..= ....  .|++....|.||+...+|.|+.  .++.||++|++++
T Consensus       255 w~~~~~~L~~~~~~~~~~---~~~~~~l~l~nP~~g~~~~~--tl~~~~~~l~PG~~~~~HrH~~--~~v~~VleG~G~~  327 (394)
T 3bu7_A          255 WEPTYEALLNYAKASDGS---PYDGLILRYTNPQTGGHPML--TMGASMQMLRPGEHTKAHRHTG--NVIYNVAKGQGYS  327 (394)
T ss_dssp             HHHHHHHHHHHHTTCCCB---TTTBEEEEECCTTTSSCSSS--SCEEEEEEECTTCBCCCEEESS--CEEEEEEECCEEE
T ss_pred             HHHHHHHHHHhhhccCcC---cCCceEEEEeCCCCCCCCCC--eeeEEEEEECCCCcCCCcccCC--cEEEEEEeCeEEE
Confidence            211           0111   1123 3344444321 1123  3778999999999999999985  4799999999977


Q ss_pred             EEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeC-CCCeEEEEEE
Q 018395          259 QIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IAD-PDGLAWFSII  302 (356)
Q Consensus       259 ~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~-~~~~~~~~~~  302 (356)
                      .+   +|++   ..+++||++++|.|..|.+ |.+ ++++.++++.
T Consensus       328 ~V---~ge~---~~~~~GD~~~iP~g~~H~~~N~g~~e~~~ll~i~  367 (394)
T 3bu7_A          328 IV---GGKR---FDWSEHDIFCVPAWTWHEHCNTQERDDACLFSFN  367 (394)
T ss_dssp             EE---TTEE---EEECTTCEEEECTTCCEEEEECCSSCCEEEEEEE
T ss_pred             EE---CCEE---EEEeCCCEEEECCCCeEEeEeCCCCCCeEEEEee
Confidence            66   3433   5799999999999999999 556 6889999986

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=99.77  E-value=1.5e-18  Score=134.69  Aligned_cols=84  Identities=17%  Similarity=0.253  Sum_probs=77.7

Q ss_pred             eEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCC-CCceecccc-ccccccCCCHHHHHHHcCCCHHHHHHHHhc
Q 018395          267 RVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTP-NPIFTHLAG-SIGTWKSLSPSVLEAAFNVPSDVEKQFRSK  344 (356)
Q Consensus       267 ~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~-~p~~~~laG-~~s~l~~~p~~vl~~af~~~~~~~~~l~~~  344 (356)
                      +.++.+|++|||++|||||+.++.|++ +++|++|.+++ ++..++||| ++|+|++||.+|+++||+++.+++++|+.+
T Consensus         4 ~~~~~~l~~G~v~vVPq~~~v~~~A~~-~le~v~F~tna~~~~~~~LAG~~~Svl~~l~~evla~aF~~s~ee~~~l~~~   82 (93)
T 1dgw_Y            4 RRYAATLSEGDIIVIPSSFPVALKAAS-DLNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELLEN   82 (93)
T ss_dssp             EEEEEEECTTCEEEECTTCCEEEEESS-SEEEEEEEESCTTCCEEESSSSTTBSTTTSCHHHHHHHSSSCTHHHHHHTTS
T ss_pred             chhhceecCCcEEEECCCCceeEEecC-CeEEEEEEecCCCCeeeeccCCcccHHHhCCHHHHHHHcCCCHHHHHHHHhc
Confidence            357889999999999999999999986 69999997777 889999999 999999999999999999999999999999


Q ss_pred             CCCeEEe
Q 018395          345 RANEAIF  351 (356)
Q Consensus       345 ~~~~~~~  351 (356)
                      +++++++
T Consensus        83 q~e~~~~   89 (93)
T 1dgw_Y           83 QKESYFV   89 (93)
T ss_dssp             CCCCSEE
T ss_pred             CCCceec
Confidence            9888765

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.77  E-value=3.9e-17  Score=152.50  Aligned_cols=193  Identities=11%  Similarity=0.133  Sum_probs=138.6

Q ss_pred             cCceEEEEEEecCCCcccCeee--CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYC--DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      +..+.+..++|+||+....|+|  ..+|++||++|++++.+   ++  +.+.|++||.+++|++.+|.+.|.++++++++
T Consensus        59 ~~~~~~~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~---~~--~~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l  133 (274)
T 1sef_A           59 GATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD---GQ--ETHELEAGGYAYFTPEMKMYLANAQEADTEVF  133 (274)
T ss_dssp             TCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEEC---SS--CEEEEETTEEEEECTTSCCEEEESSSSCEEEE
T ss_pred             CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEEE---CC--EEEEECCCCEEEECCCCCEEEEeCCCCCEEEE
Confidence            4567888999999998776544  57899999999999986   33  34899999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceee
Q 018395          112 FLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFN  191 (356)
Q Consensus       112 ~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~  191 (356)
                      ++....  . |       +.|                          +   .++..+++.+.-                 
T Consensus       134 ~v~~~y--~-~-------~~g--------------------------~---~p~~~v~~~~d~-----------------  157 (274)
T 1sef_A          134 LYKKRY--Q-P-------LAG--------------------------H---QPYKVVGSIHDQ-----------------  157 (274)
T ss_dssp             EEEEEC--C-C-------CTT--------------------------C---CCCCEEEEGGGS-----------------
T ss_pred             EEEeee--e-e-------CCC--------------------------C---CCcceeCChHHC-----------------
Confidence            876421  1 1       001                          0   112233333311                 


Q ss_pred             ccCCCCC-cccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecc-cccccCCeeEEEEEeceEEEEEEccCCceEE
Q 018395          192 CEEAPLD-VDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSP-GFSCDSALQVTYIVRGSGRAQIVGPDGKRVL  269 (356)
Q Consensus       192 l~~~~~~-~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~P-H~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~  269 (356)
                          ++. .....+...+.+.+.+.    ...+.+..+.+.||+.... |||.  ..|+.||++|++++.+-+    +  
T Consensus       158 ----~~~~~~~~~g~~~~~l~~~~~----~~~~~~~~~~l~pg~~~~~~H~H~--~~E~~yVl~G~~~~~i~~----~--  221 (274)
T 1sef_A          158 ----QPEEYEGMTDVLLWSLLPKEF----DFDMNMHILSFEPGASHAYIETHV--QEHGAYLISGQGMYNLDN----E--  221 (274)
T ss_dssp             ----CCEEGGGCTTEEEEECSCSST----TCSEEEEEEEECTTCBCSSCBCCS--CCEEEEEEECEEEEEETT----E--
T ss_pred             ----CccccCCCCCeEEEEeCCccc----CCCEEEEEEEECCCCccCcceecc--CeEEEEEEeCEEEEEECC----E--
Confidence                100 00112334444433221    1257789999999999988 9995  579999999999998732    2  


Q ss_pred             EEEecCCcEEEEcCCcEEEE-eeCC-CCeEEEEEEc
Q 018395          270 ETTVKAGNLFIVPRFYVVSK-IADP-DGLAWFSIIT  303 (356)
Q Consensus       270 ~~~l~~Gdv~vvP~g~~h~~-~~~~-~~~~~~~~~~  303 (356)
                      ...|++||+++||++.+|.. +.++ ++++++.+.+
T Consensus       222 ~~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l~~~~  257 (274)
T 1sef_A          222 WYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKD  257 (274)
T ss_dssp             EEEEETTCEEEECTTCCEEEEEECSSSCEEEEEEEE
T ss_pred             EEEECCCCEEEECCCCCEEEEeCCCCCCEEEEEEEc
Confidence            35799999999999999998 4477 7899988753

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.76  E-value=5.8e-17  Score=148.70  Aligned_cols=186  Identities=12%  Similarity=0.060  Sum_probs=131.2

Q ss_pred             eEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEE-eCCCcEEEEEecCCCcEEEEEEee
Q 018395           37 IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIA-LPFGVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        37 ~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~-iP~G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      ..+..+++.||+...+|+|...|++||++|++.+.+   ++  ....|++||.++ +|+|.+|.+.|.++++++++.+..
T Consensus        34 ~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~---~~--~~~~l~~Gd~i~~ip~~~~H~~~n~~~~~~~~l~i~r  108 (243)
T 3h7j_A           34 TEVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV---GD--VTRKMTALESAYIAPPHVPHGARNDTDQEVIAIDIKR  108 (243)
T ss_dssp             EEEEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE---TT--EEEEEETTTCEEEECTTCCEEEEECSSSCEEEEEEEE
T ss_pred             CEEEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE---CC--EEEEECCCCEEEEcCCCCcEeeEeCCCCcEEEEEEec
Confidence            467778899999999999999999999999999987   33  348999999996 999999999999999988887643


Q ss_pred             CCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceeeccCC
Q 018395          116 TSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEA  195 (356)
Q Consensus       116 ~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~l~~~  195 (356)
                      ...  .++ +.     +..                               ++...                    .+...
T Consensus       109 ~~~--~e~-~~-----~p~-------------------------------g~~~~--------------------~L~~~  129 (243)
T 3h7j_A          109 LKA--DET-YT-----SPE-------------------------------DYFLD--------------------IFKTR  129 (243)
T ss_dssp             CCT--TCC-CC-----CCT-------------------------------TSEEC--------------------CEECS
T ss_pred             cCc--ccc-CC-----Cch-------------------------------hhhhh--------------------hccCc
Confidence            221  000 00     000                               00000                    00000


Q ss_pred             CCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecC-CCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEec
Q 018395          196 PLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDG-KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVK  274 (356)
Q Consensus       196 ~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~-g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~  274 (356)
                      + ......   +        +....--+.+..+.|.| |+...+|||+.  .|+.||++|++++++-+   +   ...|+
T Consensus       130 ~-~~~~~~---~--------~~~~~~~~~~~~~~~~p~g~~~~~H~H~~--~e~~~Vl~G~~~~~i~~---~---~~~l~  189 (243)
T 3h7j_A          130 D-LLPGME---V--------TFFVEDWVEIMLAKIPGNGGEMPFHKHRN--EQIGICIGGGYDMTVEG---C---TVEMK  189 (243)
T ss_dssp             C-SBTTBC---E--------EEEEETTEEEEEEEECTTTEEEEEECCSS--EEEEEECSSCEEEEETT---E---EEEEC
T ss_pred             c-cccCcc---e--------eeeccceeEEEEEEECCCCCcCCCEeCCC--cEEEEEEECEEEEEECC---E---EEEEC
Confidence            0 000000   0        00011124567788999 99999999985  59999999999987643   2   24699


Q ss_pred             CCcEEEEcCCcEEEEee-CCCCeEEEEEEcCCC
Q 018395          275 AGNLFIVPRFYVVSKIA-DPDGLAWFSIITTPN  306 (356)
Q Consensus       275 ~Gdv~vvP~g~~h~~~~-~~~~~~~~~~~~~~~  306 (356)
                      +||.+++|+|.+|...| +++++.++.+++..+
T Consensus       190 ~Gd~i~ip~~~~H~~~n~~~~~~~~l~v~~p~~  222 (243)
T 3h7j_A          190 FGTAYFCEPREDHGAINRSEKESKSINIFFPPR  222 (243)
T ss_dssp             TTCEEEECTTCCEEEEECSSSCEEEEEEEESCS
T ss_pred             CCCEEEECCCCcEEeEeCCCCCEEEEEEEcCCh
Confidence            99999999999999955 778899998886544

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=99.75  E-value=4.2e-18  Score=166.31  Aligned_cols=150  Identities=19%  Similarity=0.245  Sum_probs=126.4

Q ss_pred             ceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCce
Q 018395          188 MAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKR  267 (356)
Q Consensus       188 ~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~  267 (356)
                      +.|++...++..  ..+|+++.++..+||.++  ++++.++.|.||++.+||||+  +.|+.||++|++++++++.+|+.
T Consensus        48 ~~~~~~~~~~~~--~~~G~~~~~~~~~lp~~~--~~~~~~~~l~pg~~~~~H~H~--~~E~~~Vl~G~~~~~~~~~~g~~  121 (385)
T 1j58_A           48 MKFSFSDTHNRL--EKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHK--EAEWAYMIYGSARVTIVDEKGRS  121 (385)
T ss_dssp             CEECGGGSCCEE--ETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEES--SCEEEEEEEEEEEEEEECTTSCE
T ss_pred             eEEEcccCCccc--cCCcEEEEeccccCcccC--ceEEEEEEECCCCCCCCccCC--hheEEEEEeeeEEEEEEeCCCcE
Confidence            788888887753  679999999999999988  688999999999999999997  67999999999999999988765


Q ss_pred             EEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHHHHHHhc
Q 018395          268 VLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSK  344 (356)
Q Consensus       268 ~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~~~l~~~  344 (356)
                       +...|++||+++||+|.+|++.+..++++++.+++...+....-....++|+.+|.++|+++|+++.+.++++...
T Consensus       122 -~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~p~evla~~~~vs~~~~~~l~~~  197 (385)
T 1j58_A          122 -FIDDVGEGDLWYFPSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGK  197 (385)
T ss_dssp             -EEEEEETTEEEEECTTCCEEEEEEEEEEEEEEEESCTTCCGGGEEEHHHHHHTSCHHHHHHHHTCCTGGGTTSCSS
T ss_pred             -EEEEeCCCCEEEECCCCeEEEEECCCCEEEEEEECCCCccccchhhhhhhhhcccHHHHHHHhCCCHHHHHhcccc
Confidence             3358999999999999999996543568999988777654332111368999999999999999999888887653

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=99.73  E-value=4.5e-16  Score=143.87  Aligned_cols=203  Identities=10%  Similarity=0.006  Sum_probs=143.9

Q ss_pred             CCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCC-CceEEEEEcCCCEEEeCCC
Q 018395           17 NGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPE-KEEKVVAIKKGDGIALPFG   95 (356)
Q Consensus        17 ~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~-~~~~~~~l~~GDv~~iP~G   95 (356)
                      ++++++.+..   |.+ +..+.+..++|+||+...+|.|.++|++||++|++++.+   + +  +.+.|++||.+++|++
T Consensus        54 ~~~~~~vL~s---P~~-G~~f~~~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l---~~g--~~~~L~~Gds~y~p~~  124 (266)
T 4e2q_A           54 TNTLGAYLIT---PAT-GSHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTN---TSS--SSKKLTVDSYAYLPPN  124 (266)
T ss_dssp             SSEEEEEEEC---GGG-TCSSEEEEEEECSSEECCCCCTTEEEEEEEEEECEEEEC-----C--CCEEECTTEEEEECTT
T ss_pred             cCEEEEEEcC---CCC-CCcEEEEEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEE---CCC--cEEEEcCCCEEEECCC
Confidence            4555655544   444 467899999999999988887799999999999999986   2 2  2489999999999999


Q ss_pred             cEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEE-cCCC
Q 018395           96 VVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVK-LDAN  174 (356)
Q Consensus        96 ~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~-~~~~  174 (356)
                      ..|++.|.  ++++++++...-   .|       +.|                             ..++ .++. .+  
T Consensus       125 ~~H~~~N~--~~Ar~l~V~k~y---~~-------~~g-----------------------------~~p~-~~v~~~~--  160 (266)
T 4e2q_A          125 FHHSLDCV--ESATLVVFERRY---EY-------LGS-----------------------------HTTE-LIVGSTD--  160 (266)
T ss_dssp             CCCEEEES--SCEEEEEEEEEC---CC-------CTT-----------------------------CCCC-CEEEEGG--
T ss_pred             CCEEEEeC--CCEEEEEEEeEe---ee-------CCC-----------------------------CCCc-eeeCcHh--
Confidence            99999995  578888875421   11       001                             0111 2222 11  


Q ss_pred             CcCCCCCcccCCCceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecc-cccccCCeeEEEEEe
Q 018395          175 AKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSP-GFSCDSALQVTYIVR  253 (356)
Q Consensus       175 ~~~~~p~~~~~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~P-H~h~~~A~ei~~v~~  253 (356)
                                         +.++.-....+-..+.+.+.++    .-++.+..+.|+||+.... |.|..  .+.+||++
T Consensus       161 -------------------dv~~~~~~g~~~~~r~l~p~~~----~~d~~~~~~t~~PG~~~p~~e~H~~--eh~~~vL~  215 (266)
T 4e2q_A          161 -------------------KQPLLETPGEVFELRKLLPMSV----AYDFNIHTMDFQPGEFLNVKEVHYN--QHGLLLLE  215 (266)
T ss_dssp             -------------------GSCCBCCTTCCSEEEESSCCST----TCSEEEEEEEECTTCBCSSCCCCSC--CEEEEEEE
T ss_pred             -------------------HCCCcccCCCcEEEEEccCccc----ccceEEEEEEECCCcCcCCceEccc--ceEEEEEe
Confidence                               1111100011223455555553    3368889999999999985 77865  58999999


Q ss_pred             ceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEEEEc
Q 018395          254 GSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFSIIT  303 (356)
Q Consensus       254 G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~  303 (356)
                      |++.+.+=+    .  ...|++||++++|.+.+|++ +.|+++++|+...+
T Consensus       216 G~g~y~l~~----~--~~~V~~GD~i~~~~~~~h~~~n~G~e~~~yl~ykd  260 (266)
T 4e2q_A          216 GQGIYRLGD----N--WYPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKD  260 (266)
T ss_dssp             CEEEEEETT----E--EEEEETTCEEEECTTCCEEEEEESSSCEEEEEEEE
T ss_pred             ceEEEEECC----E--EEEecCCCEEEECCCCcEEEEeCCCCCEEEEEEcc
Confidence            999877432    2  25799999999999999999 45899999998654

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.72  E-value=8.7e-16  Score=139.47  Aligned_cols=189  Identities=17%  Similarity=0.145  Sum_probs=129.7

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      .+..+..+.+.||+...+|.|..++++||++|++.+.+   ++  ....|++||++++|+|.+|.+.|.+  +++++++.
T Consensus        35 ~~~~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i---~~--~~~~l~~Gd~~~~p~~~~H~~~a~~--~~~~l~i~  107 (227)
T 3rns_A           35 PNSYISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI---EN--NKKTISNGDFLEITANHNYSIEARD--NLKLIEIG  107 (227)
T ss_dssp             SSEEEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE---SS--CEEEEETTEEEEECSSCCEEEEESS--SEEEEEEE
T ss_pred             CCcEEEEEEECCCCccCccccCCCEEEEEEeCEEEEEE---CC--EEEEECCCCEEEECCCCCEEEEECC--CcEEEEEE
Confidence            46788999999999999999999999999999999987   23  3489999999999999999999864  58888876


Q ss_pred             eCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceeeccC
Q 018395          115 DTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEE  194 (356)
Q Consensus       115 ~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~l~~  194 (356)
                      ..-  ..    . ++  + ++                   .++.+..    +.++.                     +.+
T Consensus       108 ~~~--~~----~-~~--~-~~-------------------~~~~l~~----~~~~~---------------------~~d  133 (227)
T 3rns_A          108 EKI--GD----G-NM--E-NK-------------------TLKMLES----ASAFN---------------------LAE  133 (227)
T ss_dssp             ECC-------------------------------------------------CCEE---------------------SGG
T ss_pred             eec--cc----c-hh--h-hh-------------------HhhcCCc----cccCc---------------------HHH
Confidence            531  00    0 00  0 00                   0111110    11222                     211


Q ss_pred             CCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEec
Q 018395          195 APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVK  274 (356)
Q Consensus       195 ~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~  274 (356)
                      .-+ +  ..++.....-      ...-.+++..+.+.||+...+|+|+  ..|+.||++|++++.+-   |+   ...|+
T Consensus       134 ~~~-~--~~g~~~~~~l------~~~~~~~~~~~~~~~G~~~~~H~H~--~~e~~~Vl~G~~~~~i~---g~---~~~l~  196 (227)
T 3rns_A          134 VVE-Y--QEGKIVSKNL------VAKPNLVMTIMSFWKGESLDPHKAP--GDALVTVLDGEGKYYVD---GK---PFIVK  196 (227)
T ss_dssp             GSC-C--CTTCEEEEEE------EEETTEEEEEEEECTTCEEEEECCS--SEEEEEEEEEEEEEEET---TE---EEEEE
T ss_pred             ccc-c--CCCCEEEEEE------EECCCeEEEEEEECCCCccCCEECC--CcEEEEEEeEEEEEEEC---CE---EEEEC
Confidence            111 1  1122211110      0111467889999999999999997  46999999999998863   22   35799


Q ss_pred             CCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          275 AGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       275 ~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      +||.+++|+|.+|...++.++++++.+
T Consensus       197 ~Gd~i~ip~~~~H~~~~~~~~~~~ll~  223 (227)
T 3rns_A          197 KGESAVLPANIPHAVEAETENFKMLLI  223 (227)
T ss_dssp             TTEEEEECTTSCEEEECCSSCEEEEEE
T ss_pred             CCCEEEECCCCcEEEEeCCCCEEEEEE
Confidence            999999999999998764556776654

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=99.71  E-value=5.7e-16  Score=149.14  Aligned_cols=238  Identities=17%  Similarity=0.183  Sum_probs=143.8

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      ..+.+.+..|.||....+|.|..++++||++|+|....+  ++  +...+++||++++|+|..|.+.|+|+++++++++.
T Consensus       101 ~~L~a~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~~v--dG--~~~~~~~GD~v~iP~g~~H~~~N~gde~l~~l~v~  176 (368)
T 3nw4_A          101 PTMWAAIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVV--NG--DPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGL  176 (368)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEECSSCEEEEEEE--TT--EEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             CceEEEEEEECCCCccCceecccceEEEEEecceEEEEE--CC--EEEEEeCCCEEEECCCCcEEeEeCCCCCeEEEEec
Confidence            578999999999999999999778999999999963344  33  34899999999999999999999999999999987


Q ss_pred             eCCCCCCCCceeEEeecccccc---c-ccCcHHHHHhhc-cCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCce
Q 018395          115 DTSKGHKAGEFTNFFLTGANGI---F-TGFSTEFVSRAW-DLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMA  189 (356)
Q Consensus       115 ~~~~~~~pg~~~~f~lag~~s~---l-~~~~~~vl~~af-~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~  189 (356)
                      +..-...-+  ..|+-.+...+   - ...+..--.+.| ++-..  .. ......+.|++..        .+..+..+.
T Consensus       177 D~Pl~~~l~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~P~--~~-~~~~~~sP~~~yp--------w~~~~~aL~  243 (368)
T 3nw4_A          177 DIPFSQQMD--VGFFEFGSDRVTDYATPNFSRGERLWCHPGLRPL--SG-LQNTVASPIGAYR--------WEFTDRALT  243 (368)
T ss_dssp             CHHHHHHHT--CCCEEECCSSCSCCCCCSSCHHHHHHCSTTCCCG--GG-CSCCSSCSCCEEC--------HHHHHHHHH
T ss_pred             chHHHhhcC--ceeeecccccccccccccCCcccchhhccccccc--cc-cCCCCCCCceecC--------HHHHHHHHH
Confidence            632100000  00111110000   0 001111111112 11000  00 0011112222211        000000000


Q ss_pred             ee---ccC-CCCCcccCCCcE-EEEeCCC-CCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEcc
Q 018395          190 FN---CEE-APLDVDIKNGGR-VVLLNTK-NLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGP  263 (356)
Q Consensus       190 ~~---l~~-~~~~~~~~~gG~-~~~~~~~-~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~  263 (356)
                       .   +.. ..++-. .+|-. +..+|+. .=+.+.+  |++....|.||.-..||-|..  .++.+|++|+|++.|-  
T Consensus       244 -~~~~l~~~~~~~~~-~~g~~~~~y~NP~tg~~~~pt--i~~~~~~L~pG~~t~~hRht~--s~Vy~V~eG~G~~~I~--  315 (368)
T 3nw4_A          244 -EQLLLEDEGQPATV-APGHAAIRYVNPTTGGDVMPT--LRCEFHRLRAGTETATRNEVG--STVFQVFEGAGAVVMN--  315 (368)
T ss_dssp             -HHHHHHHTTCSCSS-BTTEEEEECBCTTTSSBSSSS--CEEEEEEECTTCBCCCEEESS--CEEEEEEESCEEEEET--
T ss_pred             -hhhhhhhccCCCcc-cCceEEEEEeCCCCCCCcchh--HHhheEEECCCCccCCeeccc--cEEEEEEeCcEEEEEC--
Confidence             0   000 011110 01222 3444432 2244555  668889999999999999985  5899999999999883  


Q ss_pred             CCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          264 DGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       264 ~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                       | +  ..++++||+|+||.+.+|...|. +++.++++.
T Consensus       316 -~-~--~~~w~~gD~fvvP~w~~h~~~n~-~~a~Lf~~~  349 (368)
T 3nw4_A          316 -G-E--TTKLEKGDMFVVPSWVPWSLQAE-TQFDLFRFS  349 (368)
T ss_dssp             -T-E--EEEECTTCEEEECTTCCEEEEES-SSEEEEEEE
T ss_pred             -C-E--EEEecCCCEEEECCCCcEEEEeC-CCEEEEEEe
Confidence             3 3  25799999999999999999764 677777776

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=99.70  E-value=1.3e-15  Score=142.62  Aligned_cols=198  Identities=13%  Similarity=0.158  Sum_probs=135.5

Q ss_pred             cCceEEEEEEecCCCcc-cC-eeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           34 QGNIGAAKLALEKNGFA-LP-HYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~-~p-H~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      +..+.+.+++++||+.. .+ |.|..+|++||++|++++.+   ++  +.+.|++||.+++|+|.+|.+.|.++++++++
T Consensus        65 ~~~~~~~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v---~g--~~~~L~~GD~i~ip~~~~H~~~N~g~~~~~~l  139 (278)
T 1sq4_A           65 AETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL---QG--QVHAMQPGGYAFIPPGADYKVRNTTGQHTRFH  139 (278)
T ss_dssp             CCSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE---SS--CEEEECTTEEEEECTTCCEEEECCSSSCEEEE
T ss_pred             CCcEEEEEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEE---CC--EEEEECCCCEEEECCCCcEEEEECCCCCEEEE
Confidence            45788999999999887 34 55788999999999999987   23  34899999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceee
Q 018395          112 FLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFN  191 (356)
Q Consensus       112 ~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~  191 (356)
                      ++..... ..+         |       ++                     +.+.++-..+.  ..+.|-          
T Consensus       140 ~v~~~y~-~~~---------g-------~~---------------------~p~~~vgn~~d--i~~~~~----------  169 (278)
T 1sq4_A          140 WIRKHYQ-KVD---------G-------VP---------------------LPEAFVTNEQD--IQPLVM----------  169 (278)
T ss_dssp             EEEEECC-CCT---------T-------CC---------------------CCCCEEEEGGG--SCCEEC----------
T ss_pred             EEEeccc-cCC---------C-------Cc---------------------CCcccccchhh--cCcccC----------
Confidence            8865210 001         1       10                     01111111110  000000          


Q ss_pred             ccCCCCCcccCCCc--EEEEeCCCCCCCccccCceeEEEEecCCCeecc-cccccCCeeEEEEEeceEEEEEEccCCceE
Q 018395          192 CEEAPLDVDIKNGG--RVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSP-GFSCDSALQVTYIVRGSGRAQIVGPDGKRV  268 (356)
Q Consensus       192 l~~~~~~~~~~~gG--~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~P-H~h~~~A~ei~~v~~G~~~~~iv~~~g~~~  268 (356)
                           ++   ..+.  ..+.+.+.+    ...++.+..+.|.||+-... |.|.  -.+.+||++|++.+.+   +|+. 
T Consensus       170 -----~~---~~~~~~~~r~l~p~~----~~~~~~~~~~~l~pG~~i~~~~~h~--~e~~~~il~G~~~~~~---~~~~-  231 (278)
T 1sq4_A          170 -----PD---TEGRWSTTRFVDMSD----MRHDMHVNIVNFEPGGVIPFAETHV--MEHGLYVLEGKAVYRL---NQDW-  231 (278)
T ss_dssp             -----SS---GGGCEEEECSSCTTC----TTCSEEEEEEEECSSSEESCCCCCS--EEEEEEEEECEEEEEE---TTEE-
T ss_pred             -----CC---CCCceeEEEEecCCC----cCCCeEEEEEEECCCCCcCCCCCCC--ccEEEEEEeCEEEEEE---CCEE-
Confidence                 00   0011  111111111    12357799999999999986 5554  4689999999998775   3322 


Q ss_pred             EEEEecCCcEEEEcCCcEEEEe-eCCCCeEEEEEEcCCC
Q 018395          269 LETTVKAGNLFIVPRFYVVSKI-ADPDGLAWFSIITTPN  306 (356)
Q Consensus       269 ~~~~l~~Gdv~vvP~g~~h~~~-~~~~~~~~~~~~~~~~  306 (356)
                        ..|++||+++++.|-+|.+. .|+++++|+.+.+-++
T Consensus       232 --~~v~~GD~~~~~~~~~h~~~n~g~~~~~yl~~~d~nr  268 (278)
T 1sq4_A          232 --VEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVNR  268 (278)
T ss_dssp             --EEEETTCEEEEEESCCEEEECCSSSCEEEEEEEECSS
T ss_pred             --EEeCCCCEEEECCCCCEEEEcCCCCCEEEEEEEEcCC
Confidence              58999999999999999994 5889999998875444

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=99.63  E-value=8.6e-14  Score=127.83  Aligned_cols=194  Identities=11%  Similarity=0.038  Sum_probs=132.8

Q ss_pred             cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      +..+.+..++++||+...+|+  .+|++||++|++.+.+   ++  +.+.|++||.+++|++.+|.+.|.  ++++++++
T Consensus        47 ~~~~~~~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~---~~--~~~~l~~Gd~~~~p~~~~H~~~n~--~~~~~l~v  117 (246)
T 1sfn_A           47 GARFVQFTAEMPAGAQATESV--YQRFAFVLSGEVDVAV---GG--ETRTLREYDYVYLPAGEKHMLTAK--TDARVSVF  117 (246)
T ss_dssp             CCSSEEEEEEECTTCEEECCS--SEEEEEEEEEEEEEEC---SS--CEEEECTTEEEEECTTCCCEEEEE--EEEEEEEE
T ss_pred             CCcEEEEEEEECCCCcCCCCc--eeEEEEEEECEEEEEE---CC--EEEEECCCCEEEECCCCCEEEEeC--CCEEEEEE
Confidence            356788899999999888886  8899999999999986   33  348999999999999999999998  66888877


Q ss_pred             eeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceeecc
Q 018395          114 GDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCE  193 (356)
Q Consensus       114 ~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~l~  193 (356)
                      ...-  . |       +.|       .+                     ... .++.-... .  .+.       .    
T Consensus       118 ~~~y--~-~-------~~g-------~~---------------------~p~-~~vg~~~d-v--~~~-------~----  144 (246)
T 1sfn_A          118 EKPY--Q-T-------VEG-------VQ---------------------APG-VYWGNERE-N--PGY-------P----  144 (246)
T ss_dssp             EECC--C-C-------BTT-------BC---------------------CCC-CEEEETTT-C--CCE-------E----
T ss_pred             Eeee--c-c-------CCC-------Cc---------------------CCc-eeeccHhh-C--Ccc-------c----
Confidence            5421  1 1       111       10                     011 12210100 0  000       0    


Q ss_pred             CCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEe
Q 018395          194 EAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTV  273 (356)
Q Consensus       194 ~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l  273 (356)
                           .....|-..+.+.+.+.    ..++.+..+.|.||+-...|.|.. ..|..||++|++.+.+   +|+.   ..|
T Consensus       145 -----~~~~~g~~~r~l~p~~~----~~~~~~~~~tl~PG~~~~~~~~h~-~ee~~~vLeG~~~~~~---~~~~---~~l  208 (246)
T 1sfn_A          145 -----FEGDDHLIARKLLPDEP----AFDFMVSTMSFAPGASLPYAEVHY-MEHGLLMLEGEGLYKL---EENY---YPV  208 (246)
T ss_dssp             -----TTSCTTEEEEECSCCCT----TCSEEEEEEEECTTCBCSSCBCCS-SCEEEEEEECEEEEEE---TTEE---EEE
T ss_pred             -----cCCCCCeEEEEeCCCcc----CCCeEEEEEEECCCCccCcccCCC-ceEEEEEEECEEEEEE---CCEE---EEc
Confidence                 00011222333333221    235778999999999888643333 5799999999998886   3322   489


Q ss_pred             cCCcEEEEcCCcEEEE-eeCCCCeEEEEEEcCC
Q 018395          274 KAGNLFIVPRFYVVSK-IADPDGLAWFSIITTP  305 (356)
Q Consensus       274 ~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~~~  305 (356)
                      ++||.++++.+.+|.+ |.|+++++++.+.+-+
T Consensus       209 ~~GD~~~~~~~~pH~~~n~g~~~~~yl~~kd~~  241 (246)
T 1sfn_A          209 TAGDIIWMGAHCPQWYGALGRNWSKYLLYKDMN  241 (246)
T ss_dssp             ETTCEEEECTTCCEEEEEESSSCEEEEEEEECS
T ss_pred             CCCCEEEECCCCCEEEEcCCCCCEEEEEEEecc
Confidence            9999999999999998 5588999999986543

>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y

Probab=99.55  E-value=3.6e-14  Score=109.99  Aligned_cols=84  Identities=15%  Similarity=0.228  Sum_probs=74.3

Q ss_pred             EEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecc-cccccccCcHHHHHhhccCCHHHHHH
Q 018395           80 KVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTG-ANGIFTGFSTEFVSRAWDLDENTVKT  158 (356)
Q Consensus        80 ~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag-~~s~l~~~~~~vl~~af~~~~~~~~~  158 (356)
                      ...+|++||+++||+|++....+..  +++++|+..+.  ++.   +.+|||| ..|+|++||.++|+.||+++.+++++
T Consensus         6 ~~~~l~~G~v~vVPq~~~v~~~A~~--~le~v~F~tna--~~~---~~~~LAG~~~Svl~~l~~evla~aF~~s~ee~~~   78 (93)
T 1dgw_Y            6 YAATLSEGDIIVIPSSFPVALKAAS--DLNMVGIGVNA--ENN---ERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEE   78 (93)
T ss_dssp             EEEEECTTCEEEECTTCCEEEEESS--SEEEEEEEESC--TTC---CEEESSSSTTBSTTTSCHHHHHHHSSSCTHHHHH
T ss_pred             hhceecCCcEEEECCCCceeEEecC--CeEEEEEEecC--CCC---eeeeccCCcccHHHhCCHHHHHHHcCCCHHHHHH
Confidence            3579999999999999999999974  49999976654  232   6899999 89999999999999999999999999


Q ss_pred             hhcccCCceEEE
Q 018395          159 LVGKQTGKGIVK  170 (356)
Q Consensus       159 l~~~q~~~~iv~  170 (356)
                      |+.+|+++.|+.
T Consensus        79 l~~~q~e~~~~~   90 (93)
T 1dgw_Y           79 LLENQKESYFVD   90 (93)
T ss_dssp             HTTSCCCCSEEC
T ss_pred             HHhcCCCceecc
Confidence            999999888875

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=99.53  E-value=1.1e-14  Score=110.11  Aligned_cols=71  Identities=20%  Similarity=0.298  Sum_probs=64.8

Q ss_pred             ccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCc
Q 018395            8 KLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKE   78 (356)
Q Consensus         8 ~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~   78 (356)
                      .+.++.+.+..|++..+++.++|.|+..+++++++.|.||++..|||| +|.|++||++|++++++|+++++
T Consensus         7 ~~~~p~~~n~~G~~~~~~~~~~P~Ln~lgls~~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V~~~g~   78 (79)
T 1dgw_X            7 RSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQ   78 (79)
T ss_dssp             TSSCCSEECSSEEEEEECTTTCHHHHTTTEEEEEEEECTTCEEEEEEESSCEEEEEEEESCEEEEEEEEC--
T ss_pred             ccCCCCccCCCCcEEEEChhhCcccCcCCcceEEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEEecCCCC
Confidence            345677899999999999999999999999999999999999999999 99999999999999999998763

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.40  E-value=4e-12  Score=109.03  Aligned_cols=143  Identities=13%  Similarity=0.101  Sum_probs=97.5

Q ss_pred             cCCCccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCC----Cce
Q 018395            4 DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPE----KEE   79 (356)
Q Consensus         4 dl~~~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~----~~~   79 (356)
                      |++..++... ...|.....+....  .....++.+..++++||+...+|+|...|++||++|++++.+-..+    +..
T Consensus        11 ~~~~~~~~~~-~~~G~~~~~l~~~~--~~g~~~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~   87 (163)
T 1lr5_A           11 DISQMPQSSY-GIEGLSHITVAGAL--NHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQP   87 (163)
T ss_dssp             EGGGSCCBCT-TCTTEEEEEEECHH--HHCCSSEEEEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSC
T ss_pred             ChHHCChhhc-cCCCcceEEEeccc--cCCCCcEEEEEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCcc
Confidence            3443444433 33455555443211  1223468889999999999999999889999999999999874311    112


Q ss_pred             EEEEEcCCCEEEeCCCcEEEEEecC-CCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHH
Q 018395           80 KVVAIKKGDGIALPFGVVTWWYNKE-DTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKT  158 (356)
Q Consensus        80 ~~~~l~~GDv~~iP~G~~H~~~N~g-~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~  158 (356)
                      +.+.|++||++++|+|.+|++.|.+ +++++++++....    +.  ..++..   +|+..+....+...+.++.+.+++
T Consensus        88 ~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~----~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  158 (163)
T 1lr5_A           88 QEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRP----PA--KIFLYD---DWSMPHTAAVLKFPFVWDEDCFEA  158 (163)
T ss_dssp             EEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEESS----SC--CEEEES---STTSCGGGCEEESSCTTTHHHHHH
T ss_pred             EEEEeCCCCEEEECCCCcEEeEeCCCCCCEEEEEEECCC----Cc--cccccc---ccccCCcCccceeccccccccccc
Confidence            4589999999999999999999998 8899999987643    11  233322   455555555555556666666654

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=99.32  E-value=8.2e-12  Score=107.46  Aligned_cols=98  Identities=19%  Similarity=0.231  Sum_probs=80.2

Q ss_pred             ceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcc-cCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCE
Q 018395           12 QVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFA-LPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDG   89 (356)
Q Consensus        12 ~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~-~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv   89 (356)
                      +......|..+....   +......+.+..++|+||+.. .+|+| ..+|++||++|++++.+   ++  ..+.|++||+
T Consensus        21 p~~~~~~G~~~~~l~---~~~~~~~~~~~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~---~~--~~~~l~~GD~   92 (163)
T 3i7d_A           21 RLNAAMDGRSSLRLG---DAGGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD---DQ--GEHPMVPGDC   92 (163)
T ss_dssp             GGGGGGTTEEEEEHH---HHTTCCSEEEEEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE---TT--EEEEECTTCE
T ss_pred             CccccCCCeEEEEcc---cCCCCCeEEEEEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE---CC--EEEEeCCCCE
Confidence            444456777766543   333456789999999999966 79999 55899999999999987   23  3589999999


Q ss_pred             EEeCCC--cEEEEEecCCCcEEEEEEeeCC
Q 018395           90 IALPFG--VVTWWYNKEDTELVVLFLGDTS  117 (356)
Q Consensus        90 ~~iP~G--~~H~~~N~g~e~l~~l~i~~~~  117 (356)
                      +++|+|  ..|++.|.++++++++++....
T Consensus        93 i~ip~~~~~~H~~~n~~~~~~~~l~v~~p~  122 (163)
T 3i7d_A           93 AAFPAGDPNGHQFVNRTDAPATFLVVGTRT  122 (163)
T ss_dssp             EEECTTCCCCBEEECCSSSCEEEEEEEECC
T ss_pred             EEECCCCCcceEEEECCCCCEEEEEEECCC
Confidence            999999  9999999999999999988754

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=99.32  E-value=1.7e-12  Score=102.34  Aligned_cols=81  Identities=17%  Similarity=0.125  Sum_probs=68.5

Q ss_pred             ccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           33 RQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      .+..+.+.+++++||+...+|+| ...+++||++|++++..  +++......+++||++++|+|..|.+.|.|+++|+||
T Consensus        13 en~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~I   90 (98)
T 3lag_A           13 DNDEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGTRSLAQLKTGRSYARKAGVQHDVRNESTAEIVFL   90 (98)
T ss_dssp             ESSSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSCEECCCBCTTCCEEECTTCEEEEBCCSSSCEEEE
T ss_pred             cCCeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCceEEEEecCCcEEEEcCCCcEECEECCCCeEEEE
Confidence            34578999999999999999999 66788889999998863  4444455789999999999999999999999999999


Q ss_pred             EEee
Q 018395          112 FLGD  115 (356)
Q Consensus       112 ~i~~  115 (356)
                      .+-.
T Consensus        91 eVE~   94 (98)
T 3lag_A           91 EIEL   94 (98)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8743

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.32  E-value=1.5e-11  Score=105.34  Aligned_cols=79  Identities=23%  Similarity=0.312  Sum_probs=70.5

Q ss_pred             cCceEEEEEEecCCC-cccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCC-cEEEEEecCCCcEEE
Q 018395           34 QGNIGAAKLALEKNG-FALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG-VVTWWYNKEDTELVV  110 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~-~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G-~~H~~~N~g~e~l~~  110 (356)
                      ..++.+..++++||+ ...+||| ..+|++||++|++.+.+   ++  ..+.|++||++++|+| ..|++.|.+++++++
T Consensus        43 ~~~~~~~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~---~~--~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~  117 (162)
T 3l2h_A           43 LRHMGIHLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM---EN--DQYPIAPGDFVGFPCHAAAHSISNDGTETLVC  117 (162)
T ss_dssp             CCSEEEEEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE---TT--EEEEECTTCEEEECTTSCCEEEECCSSSCEEE
T ss_pred             CCeEEEEEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE---CC--EEEEeCCCCEEEECCCCceEEeEeCCCCCEEE
Confidence            357789999999999 5899999 99999999999999986   33  3589999999999997 999999999999999


Q ss_pred             EEEeeCC
Q 018395          111 LFLGDTS  117 (356)
Q Consensus       111 l~i~~~~  117 (356)
                      +++..+.
T Consensus       118 l~v~~p~  124 (162)
T 3l2h_A          118 LVIGQRL  124 (162)
T ss_dssp             EEEEECC
T ss_pred             EEEECCC
Confidence            9987754

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=99.31  E-value=7e-12  Score=98.15  Aligned_cols=78  Identities=17%  Similarity=0.107  Sum_probs=67.0

Q ss_pred             CceEEEEEEecCCCcccCeeeCCC-EEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSA-RVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~-e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      ..+.+.+++++||+...+|.|..+ |++||++|++++.+   ++....+.|++||++++|+|.+|++.|.++++++++.+
T Consensus        16 ~~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~---~~g~~~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~v   92 (97)
T 2fqp_A           16 ERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET---PEGSVTSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEI   92 (97)
T ss_dssp             SSEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE---TTEEEEEEECTTCCEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             CeEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe---CCCCEEEEEcCCCEEEeCCCCcccCEeCCCCcEEEEEE
Confidence            468889999999999999999554 69999999999986   22113589999999999999999999999999999887


Q ss_pred             ee
Q 018395          114 GD  115 (356)
Q Consensus       114 ~~  115 (356)
                      ..
T Consensus        93 ~~   94 (97)
T 2fqp_A           93 EI   94 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=99.31  E-value=2.7e-11  Score=104.63  Aligned_cols=79  Identities=13%  Similarity=0.154  Sum_probs=71.3

Q ss_pred             cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecC-CCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKE-DTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g-~e~l~~l~  112 (356)
                      ...+.+..++++||+...+|+|...|++||++|++.+.+   ++  ..+.|++||+++||+|.+|++.|.+ ++++++++
T Consensus        53 ~~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i---~~--~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~  127 (167)
T 3ibm_A           53 APAFETRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL---DD--RVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLC  127 (167)
T ss_dssp             SSSEEEEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE---TT--EEEEECTTCEEEECTTCCEEEEEESSSCCEEEEE
T ss_pred             CCcEEEEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE---CC--EEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEE
Confidence            457889999999999999999999999999999999986   33  3589999999999999999999999 99999999


Q ss_pred             EeeCC
Q 018395          113 LGDTS  117 (356)
Q Consensus       113 i~~~~  117 (356)
                      +....
T Consensus       128 i~~~~  132 (167)
T 3ibm_A          128 IVDSD  132 (167)
T ss_dssp             EEESS
T ss_pred             EEeCC
Confidence            87753

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.30  E-value=1e-11  Score=101.39  Aligned_cols=80  Identities=13%  Similarity=-0.006  Sum_probs=68.4

Q ss_pred             cCceEEEEEEecCCCcccCeeeC-CCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYCD-SARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~-a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      +.++.+.+++++||+...+|||. ..|++||++|++.+.+.  ++  ..+.|++||++++|+|.+|++.|.+++++++++
T Consensus        36 ~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~~--~~--~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~  111 (125)
T 3h8u_A           36 TNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQG--NG--IVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVS  111 (125)
T ss_dssp             CSSCEEEEEEECTTCEECCC-CTTCEEEEEEEECEEEEECS--TT--CEEEEETTEEEEECTTCCCEEEECSSSCEEEEE
T ss_pred             CCCEEEEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEEC--CC--eEEEeCCCCEEEECCCCEEEeEeCCCCCEEEEE
Confidence            34678899999999999999995 69999999999998641  22  348999999999999999999999999999999


Q ss_pred             EeeCC
Q 018395          113 LGDTS  117 (356)
Q Consensus       113 i~~~~  117 (356)
                      ++.+.
T Consensus       112 v~~p~  116 (125)
T 3h8u_A          112 VVAPG  116 (125)
T ss_dssp             EEEST
T ss_pred             EECCC
Confidence            87653

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.30  E-value=1.3e-11  Score=96.48  Aligned_cols=79  Identities=18%  Similarity=0.171  Sum_probs=69.2

Q ss_pred             ccCceEEEEEEecCCCcccCeeeC-CCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           33 RQGNIGAAKLALEKNGFALPHYCD-SARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~~pH~h~-a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      ...++.+..+++.||....+|+|. .+|++||++|++.+.+   ++  ..+.+++||++++|+|..|.+.|.++++++++
T Consensus        24 ~~~~~~~~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~--~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~   98 (105)
T 1v70_A           24 QSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GE--EEALLAPGMAAFAPAGAPHGVRNESASPALLL   98 (105)
T ss_dssp             EETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TT--EEEEECTTCEEEECTTSCEEEECCSSSCEEEE
T ss_pred             CCCceEEEEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CC--EEEEeCCCCEEEECCCCcEEeEeCCCCCEEEE
Confidence            345788999999999999999994 6799999999999986   23  35899999999999999999999999999999


Q ss_pred             EEeeC
Q 018395          112 FLGDT  116 (356)
Q Consensus       112 ~i~~~  116 (356)
                      ++..+
T Consensus        99 ~v~~p  103 (105)
T 1v70_A           99 VVTAP  103 (105)
T ss_dssp             EEEES
T ss_pred             EEeCC
Confidence            88654

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.28  E-value=3.6e-11  Score=99.72  Aligned_cols=78  Identities=24%  Similarity=0.146  Sum_probs=68.3

Q ss_pred             ccCceEEEEEEecCCCcccCeeeC-CCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           33 RQGNIGAAKLALEKNGFALPHYCD-SARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~~pH~h~-a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      .+..+.+..++++||+...+|+|. ..|++||++|++.+.+   ++  ..+.|++||++++|+|.+|++.|.++++++++
T Consensus        53 ~~~~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i---~~--~~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l  127 (133)
T 1o4t_A           53 HNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NG--KDVPIKAGDVCFTDSGESHSIENTGNTDLEFL  127 (133)
T ss_dssp             TTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TT--EEEEEETTEEEEECTTCEEEEECCSSSCEEEE
T ss_pred             CCceEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEEE---CC--EEEEeCCCcEEEECCCCcEEeEECCCCCEEEE
Confidence            345677889999999999999995 7999999999999986   23  45899999999999999999999999999999


Q ss_pred             EEee
Q 018395          112 FLGD  115 (356)
Q Consensus       112 ~i~~  115 (356)
                      ++..
T Consensus       128 ~v~~  131 (133)
T 1o4t_A          128 AVII  131 (133)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8754

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=99.26  E-value=6.5e-11  Score=104.39  Aligned_cols=94  Identities=7%  Similarity=-0.059  Sum_probs=74.3

Q ss_pred             CCeEEEEeCCCCCCCcccCceEEEEEEecCCCccc---CeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeC
Q 018395           17 NGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFAL---PHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALP   93 (356)
Q Consensus        17 ~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~---pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP   93 (356)
                      ++|..+....   +......+.+..++++||+...   +|+|..+|++||++|++.+.+- .++....+.|++||.+++|
T Consensus       100 ~~~~~~~~l~---~~~~~~~~~~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~-~~~~~~~~~l~~GD~~~~~  175 (198)
T 2bnm_A          100 VDYYVYNCLV---RTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWG-DKENPKEALLPTGASMFVE  175 (198)
T ss_dssp             STTEEEEECC---CCTTSTTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEES-CTTSCEEEEECTTCEEEEC
T ss_pred             CCceEEEeec---cCCCCCcceEEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEEC-CcCCcccEEECCCCEEEeC
Confidence            4454444443   2334567889999999999887   6888779999999999999872 1111245899999999999


Q ss_pred             CCcEEEEEec-CCCcEEEEEEe
Q 018395           94 FGVVTWWYNK-EDTELVVLFLG  114 (356)
Q Consensus        94 ~G~~H~~~N~-g~e~l~~l~i~  114 (356)
                      ++.+|++.|. ++++++++++.
T Consensus       176 ~~~~H~~~n~~~~~~~~~l~v~  197 (198)
T 2bnm_A          176 EHVPHAFTAAKGTGSAKLIAVN  197 (198)
T ss_dssp             TTCCEEEEESTTSCCEEEEEEE
T ss_pred             CCCceEEEecCCCCCeEEEEEe
Confidence            9999999999 99999998874

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=99.26  E-value=4.4e-11  Score=95.10  Aligned_cols=80  Identities=19%  Similarity=0.181  Sum_probs=70.3

Q ss_pred             ccCceEEEEEEecCCCcccCe--eeC-CCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEE
Q 018395           33 RQGNIGAAKLALEKNGFALPH--YCD-SARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELV  109 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~~pH--~h~-a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~  109 (356)
                      ...++.+..+++.||....+|  +|. ..|++||++|++++.+   ++  ..+.|++||++++|+|..|++.|.++++++
T Consensus        17 ~~~~~~~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~--~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~   91 (113)
T 2gu9_A           17 SLRQVQAAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DG--HTQALQAGSLIAIERGQAHEIRNTGDTPLK   91 (113)
T ss_dssp             EETTEEEEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TT--EEEEECTTEEEEECTTCCEEEECCSSSCEE
T ss_pred             cCCcEEEEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CC--EEEEeCCCCEEEECCCCcEEeEcCCCCCEE
Confidence            346788999999999999888  995 8999999999999987   23  348999999999999999999999999999


Q ss_pred             EEEEeeCC
Q 018395          110 VLFLGDTS  117 (356)
Q Consensus       110 ~l~i~~~~  117 (356)
                      ++++..+.
T Consensus        92 ~~~v~~~~   99 (113)
T 2gu9_A           92 TVNFYHPP   99 (113)
T ss_dssp             EEEEEESC
T ss_pred             EEEEECCC
Confidence            99887654

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=99.25  E-value=9.9e-12  Score=113.42  Aligned_cols=82  Identities=12%  Similarity=0.008  Sum_probs=68.1

Q ss_pred             ccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEE-------cCC--------CceEEEEEcCCCEEEeCCCc
Q 018395           33 RQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIV-------LPE--------KEEKVVAIKKGDGIALPFGV   96 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv-------~~~--------~~~~~~~l~~GDv~~iP~G~   96 (356)
                      .+..+++..++++||+...+|+| ..+|++||++|++.+.+-       ...        ++...+.+++||++++|+|.
T Consensus        39 ~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~  118 (239)
T 2xlg_A           39 KDIGFAIAHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHY  118 (239)
T ss_dssp             TTEEEEEEEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTE
T ss_pred             CCCCEEEEEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCC
Confidence            34578889999999999999999 699999999999999761       111        11225899999999999999


Q ss_pred             EEEEEecCCCcEEE-EEEe
Q 018395           97 VTWWYNKEDTELVV-LFLG  114 (356)
Q Consensus        97 ~H~~~N~g~e~l~~-l~i~  114 (356)
                      +|.+.|.+++++++ ++++
T Consensus       119 ~H~~~N~~~~~~~~~l~~~  137 (239)
T 2xlg_A          119 MHGFVNPTDKTLPIVFVWM  137 (239)
T ss_dssp             EEEEECCSSSCEEEEEEEE
T ss_pred             CEEEEeCCCCCEEEEEEEE
Confidence            99999999999888 6655

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=99.25  E-value=9.2e-11  Score=103.41  Aligned_cols=83  Identities=20%  Similarity=0.240  Sum_probs=72.1

Q ss_pred             CceEEEEEEecCCCc------ccCeeeC---CCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395           35 GNIGAAKLALEKNGF------ALPHYCD---SARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~------~~pH~h~---a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~  105 (356)
                      .++.+..++++||+.      ..+|+|.   .+|++||++|++.+.+-+..++...+.|++||++++|+|..|++.|.++
T Consensus        65 ~~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ip~g~~H~~~N~g~  144 (190)
T 1x82_A           65 GDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGD  144 (190)
T ss_dssp             TCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSS
T ss_pred             CCeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEEECCCCeEEEEECCc
Confidence            468889999999998      7799994   4799999999999998655445556899999999999999999999999


Q ss_pred             CcEEEEEEeeCC
Q 018395          106 TELVVLFLGDTS  117 (356)
Q Consensus       106 e~l~~l~i~~~~  117 (356)
                      ++++++++....
T Consensus       145 ~~~~~l~v~~~~  156 (190)
T 1x82_A          145 EPFIFLAIYPAD  156 (190)
T ss_dssp             SCEEEEEEEETT
T ss_pred             ccEEEEEEECCC
Confidence            999999987643

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=99.25  E-value=3.1e-11  Score=103.18  Aligned_cols=78  Identities=10%  Similarity=0.144  Sum_probs=70.6

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      ..+.+..++++||+...+|+|...|++||++|++.+.+   ++  +.+.|++||+++||+|..|.+.|.++++++++++.
T Consensus        42 ~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v---~g--~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i~  116 (156)
T 3kgz_A           42 LACEWRYFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV---GE--TISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVV  116 (156)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE---TT--EEEEEETTCEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             CcEEEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CC--EEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            57888999999999999999988999999999999986   33  35899999999999999999999999999999988


Q ss_pred             eCC
Q 018395          115 DTS  117 (356)
Q Consensus       115 ~~~  117 (356)
                      ...
T Consensus       117 ~~~  119 (156)
T 3kgz_A          117 NAA  119 (156)
T ss_dssp             ESS
T ss_pred             eCC
Confidence            753

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.24  E-value=4.8e-11  Score=100.71  Aligned_cols=83  Identities=10%  Similarity=0.043  Sum_probs=69.2

Q ss_pred             CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCc-eEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKE-EKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~-~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      .++.+..+++.||....+|+| ..+|++||++|++++.+-+.... ...+.|++||++++|+|.+|++.|.+++++++++
T Consensus        41 ~~~~~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~  120 (148)
T 2oa2_A           41 DHLQVTLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYS  120 (148)
T ss_dssp             SSCEEEEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEE
T ss_pred             CceEEEEEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEE
Confidence            467888999999999999999 57799999999999987421100 1137999999999999999999999999999998


Q ss_pred             EeeCC
Q 018395          113 LGDTS  117 (356)
Q Consensus       113 i~~~~  117 (356)
                      +..+.
T Consensus       121 i~~~~  125 (148)
T 2oa2_A          121 IYAPP  125 (148)
T ss_dssp             EEESC
T ss_pred             EECCC
Confidence            87643

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=99.24  E-value=3.6e-11  Score=103.79  Aligned_cols=78  Identities=17%  Similarity=0.121  Sum_probs=70.4

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      .++.+..++++||+...+|+|...|++||++|++.+.+   ++  +.+.|++||++++|+|..|.+.|.++++++++++.
T Consensus        51 ~~~~~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v---~g--~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~i~  125 (166)
T 3jzv_A           51 LTGELRYFEVGPGGHSTLERHQHAHGVMILKGRGHAMV---GR--AVSAVAPYDLVTIPGWSWHQFRAPADEALGFLCMV  125 (166)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSSCEEEEEEEECEEEEE---TT--EEEEECTTCEEEECTTCCEEEECCTTSCEEEEEEE
T ss_pred             CeEEEEEEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CC--EEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            56888999999999999999988899999999999976   33  35899999999999999999999999999999988


Q ss_pred             eCC
Q 018395          115 DTS  117 (356)
Q Consensus       115 ~~~  117 (356)
                      ...
T Consensus       126 ~~~  128 (166)
T 3jzv_A          126 NAE  128 (166)
T ss_dssp             ESS
T ss_pred             ccC
Confidence            753

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=99.23  E-value=5.1e-11  Score=96.08  Aligned_cols=77  Identities=17%  Similarity=0.242  Sum_probs=67.5

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEE-EEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVV-AIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~-~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      .++.+..+++.||....+|+|+..|++||++|++++.+   +++  .+ .|++||++++|+|..|++.|.++++++++++
T Consensus        25 ~~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~--~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l~i   99 (117)
T 2b8m_A           25 EHVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL---EDQ--EPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVV   99 (117)
T ss_dssp             SSCEEEEEEEETTCBCCCEECSSCEEEEEEESEEEEEE---TTS--CCEEEETTCEEEECTTCEEEEECCSSSEEEEEEE
T ss_pred             CceEEEEEEECCCCcCCCEeCCCcEEEEEEeCEEEEEE---CCE--EEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEE
Confidence            45678889999999999999999999999999999986   232  26 9999999999999999999999999999987


Q ss_pred             eeC
Q 018395          114 GDT  116 (356)
Q Consensus       114 ~~~  116 (356)
                      ..+
T Consensus       100 ~~~  102 (117)
T 2b8m_A          100 KAP  102 (117)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            543

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=99.23  E-value=3.7e-11  Score=97.05  Aligned_cols=76  Identities=16%  Similarity=0.192  Sum_probs=65.3

Q ss_pred             ccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           33 RQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      ...++.+.+++++||....+|+|..+|++||++|++++.+   ++  +.+.|++||++++|+|.+|.+.|.++..+.++.
T Consensus        32 ~~~~~~v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~~--~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~~  106 (114)
T 3fjs_A           32 KEHRLEVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV---DG--AQRRLHQGDLLYLGAGAAHDVNAITNTSLLVTV  106 (114)
T ss_dssp             EETTEEEEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE---TT--EEEEECTTEEEEECTTCCEEEEESSSEEEEEEE
T ss_pred             eCCCEEEEEEEECCCCccCceeCCCcEEEEEEECEEEEEE---CC--EEEEECCCCEEEECCCCcEEEEeCCCcEEEEEE
Confidence            4467899999999999999999988899999999999987   33  358999999999999999999998776555544


Q ss_pred             E
Q 018395          113 L  113 (356)
Q Consensus       113 i  113 (356)
                      +
T Consensus       107 v  107 (114)
T 3fjs_A          107 V  107 (114)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.23  E-value=9.6e-11  Score=98.92  Aligned_cols=98  Identities=20%  Similarity=0.219  Sum_probs=78.3

Q ss_pred             cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      ..++.+..++++||+...+|+|...|++||++|++++.+   +++. .+.|++||++++|+|.+|++.|.+++++.++++
T Consensus        45 ~~~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~---~~~~-~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v  120 (147)
T 2f4p_A           45 VFNTQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---RGKP-ARILKKGDVVEIPPNVVHWHGAAPDEELVHIGI  120 (147)
T ss_dssp             SSSCEEEEEEECTTCEECSEECTTCEEEEEEEEEEEEEE---TTSC-CEEEETTCEEEECTTCCEEEEEBTTBCEEEEEE
T ss_pred             CCcEEEEEEEECCCCccCceECCCceEEEEEeCEEEEEE---CCEE-EEEECCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            357889999999999999999977999999999999986   2321 279999999999999999999999999999988


Q ss_pred             eeCCCCCCCCceeEEeecccccccccCcHHHHHh
Q 018395          114 GDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSR  147 (356)
Q Consensus       114 ~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~  147 (356)
                      ....  .  +.        ...||..+.++...+
T Consensus       121 ~~~~--~--~~--------~~~wl~~v~~e~~~~  142 (147)
T 2f4p_A          121 STQV--H--LG--------PAEWLGSVTEEEYRK  142 (147)
T ss_dssp             ECCG--G--GC--------CCEECCCCCHHHHHH
T ss_pred             EccC--C--CC--------CceecccCCHHHhhh
Confidence            7643  1  11        135677666655543

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=99.22  E-value=5e-11  Score=99.42  Aligned_cols=82  Identities=17%  Similarity=0.231  Sum_probs=70.4

Q ss_pred             ccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           33 RQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      ....+.+..++++||+...+|+|...|++||++|++.+.+.. ++  ..+.+++||++++|+|..|.+.|.+++++++++
T Consensus        35 ~~~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~-~~--~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~  111 (145)
T 3ht1_A           35 GADRFVLTEFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPD-QG--RTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLV  111 (145)
T ss_dssp             TCCSEEEEEEEEEEEEECCCEECSSCEEEEEEEECEEEEEGG-GT--EEEEECTTCEEEECTTCCBEEECCTTCCEEEEE
T ss_pred             CCCcEEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEEeE-CC--EEEEECCCCEEEECCCCeEEeEcCCCCCEEEEE
Confidence            345788999999999999999998889999999999987211 23  458999999999999999999999999999998


Q ss_pred             EeeCC
Q 018395          113 LGDTS  117 (356)
Q Consensus       113 i~~~~  117 (356)
                      +....
T Consensus       112 i~~~~  116 (145)
T 3ht1_A          112 VAPCE  116 (145)
T ss_dssp             EEESC
T ss_pred             EECCC
Confidence            87643

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=99.20  E-value=5e-11  Score=97.80  Aligned_cols=78  Identities=19%  Similarity=0.140  Sum_probs=69.5

Q ss_pred             cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      ..++.+..++++||....+|+|...|++||++|++++.+   ++  ..+.+++||++++|+|.+|.+.|.++++++++++
T Consensus        45 ~~~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~--~~~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l~v  119 (126)
T 1vj2_A           45 APNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK---EQ--GEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCL  119 (126)
T ss_dssp             CSSEEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC---SS--CEEEEETTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             CCCEEEEEEEECCCCcCCceeCCCcEEEEEEEeEEEEEE---CC--EEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            457889999999999999999999999999999999976   22  3489999999999999999999999989999988


Q ss_pred             eeC
Q 018395          114 GDT  116 (356)
Q Consensus       114 ~~~  116 (356)
                      ..+
T Consensus       120 ~~~  122 (126)
T 1vj2_A          120 IPK  122 (126)
T ss_dssp             EEG
T ss_pred             Ecc
Confidence            764

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=99.19  E-value=7.2e-11  Score=96.30  Aligned_cols=77  Identities=19%  Similarity=0.143  Sum_probs=67.9

Q ss_pred             cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      +.++.+.+++++||+...+|+|...|++||++|++.+.+   ++  ..+.|++||++++|+|..|.+.|.++ +++++.+
T Consensus        38 ~~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~--~~~~l~~Gd~~~ip~~~~H~~~~~~~-~~~~l~v  111 (126)
T 4e2g_A           38 GKNLMLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI---GE--ETRVLRPGMAYTIPGGVRHRARTFED-GCLVLDI  111 (126)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE---TT--EEEEECTTEEEEECTTCCEEEECCTT-CEEEEEE
T ss_pred             CCCeEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE---CC--EEEEeCCCCEEEECCCCcEEeEECCC-CEEEEEE
Confidence            346889999999999999999977999999999999987   33  34899999999999999999999987 6888887


Q ss_pred             eeC
Q 018395          114 GDT  116 (356)
Q Consensus       114 ~~~  116 (356)
                      +.+
T Consensus       112 ~~p  114 (126)
T 4e2g_A          112 FSP  114 (126)
T ss_dssp             EES
T ss_pred             ECC
Confidence            764

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=99.17  E-value=4.8e-10  Score=91.63  Aligned_cols=77  Identities=17%  Similarity=0.217  Sum_probs=68.8

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      ..+.+...+++||....+|||+..|++||++|++++.+   ++  +.+.+++||++++|+|..|.+.|.++++++++++.
T Consensus        32 ~~~~~~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i---~~--~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~i~  106 (128)
T 4i4a_A           32 TPFGGAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRI---ND--EDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTIW  106 (128)
T ss_dssp             CSSEEEEEEECTTEECCCBCCSSEEEEEEEESEEEEEE---TT--EEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             CCcEEEEEEECCCCccCCEecCCeEEEEEEeCEEEEEE---CC--EEEEECCCcEEEECCCCcEEeEeCCCCCEEEEEEE
Confidence            45788899999999999999999999999999999987   33  35899999999999999999999998889888876


Q ss_pred             eC
Q 018395          115 DT  116 (356)
Q Consensus       115 ~~  116 (356)
                      .+
T Consensus       107 f~  108 (128)
T 4i4a_A          107 WD  108 (128)
T ss_dssp             EC
T ss_pred             EC
Confidence            53

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=99.16  E-value=7.4e-11  Score=102.18  Aligned_cols=78  Identities=17%  Similarity=0.171  Sum_probs=69.2

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      .+..+.+++|+||+...+|.|..+|++||++|++++.+-  ++  +.+.|++||++ +|+|.+|.+.|.++++++++++.
T Consensus        77 ~G~~~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld--~g--e~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V~  151 (172)
T 3es1_A           77 GGSVIRVVDMLPGKESPMHRTNSIDYGIVLEGEIELELD--DG--AKRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFIL  151 (172)
T ss_dssp             CSEEEEEEEECTTCBCCCBCCSEEEEEEEEESCEEEECG--GG--CEEEECTTCEE-EECSCCBEEECCSSSCEEEEEEE
T ss_pred             CCeEEEEEEECCCCCCCCeecCceEEEEEEeCEEEEEEC--CC--eEEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEEE
Confidence            578899999999999999999888999999999999761  12  34899999999 99999999999999999999988


Q ss_pred             eCC
Q 018395          115 DTS  117 (356)
Q Consensus       115 ~~~  117 (356)
                      ...
T Consensus       152 ~P~  154 (172)
T 3es1_A          152 IEA  154 (172)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            754

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=99.14  E-value=1.8e-10  Score=98.99  Aligned_cols=74  Identities=18%  Similarity=0.099  Sum_probs=65.5

Q ss_pred             ceEEEEEEecC-CCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           36 NIGAAKLALEK-NGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        36 ~~~~~~~~l~P-g~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      -+....++|+| |+...+|.+ .++|++||++|++.+.+   ++  ..+.|++||.+++|+|..|.+.|.++++++++++
T Consensus        87 ~~~~~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl---~g--~~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~V  161 (166)
T 2vpv_A           87 YFASGILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV---CK--NKFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFV  161 (166)
T ss_dssp             SCEEEEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEE---TT--EEEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             cceeEEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEE---CC--EEEEEcCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            57778999999 887777765 99999999999999987   33  4589999999999999999999999999999887


Q ss_pred             e
Q 018395          114 G  114 (356)
Q Consensus       114 ~  114 (356)
                      .
T Consensus       162 q  162 (166)
T 2vpv_A          162 Q  162 (166)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=99.13  E-value=2e-10  Score=100.87  Aligned_cols=79  Identities=10%  Similarity=0.074  Sum_probs=67.7

Q ss_pred             ccCceEEEEEEecCCCccc--CeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEE
Q 018395           33 RQGNIGAAKLALEKNGFAL--PHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVV  110 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~~--pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~  110 (356)
                      ....+.+..++++||+...  +|+|..+|++||++|++.+.+   ++  ..+.|++||++++|+|.+|++.|.+++++ +
T Consensus       100 ~~~~~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~---~~--~~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~  173 (192)
T 1y9q_A          100 ADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF---DE--QWHELQQGEHIRFFSDQPHGYAAVTEKAV-F  173 (192)
T ss_dssp             TTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE---TT--EEEEECTTCEEEEECSSSEEEEESSSCEE-E
T ss_pred             CCCcEEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE---CC--EEEEeCCCCEEEEcCCCCeEeECCCCCcE-E
Confidence            4567888999999999876  566677999999999999986   33  45899999999999999999999999999 8


Q ss_pred             EEEeeCC
Q 018395          111 LFLGDTS  117 (356)
Q Consensus       111 l~i~~~~  117 (356)
                      +++..+.
T Consensus       174 l~v~~~~  180 (192)
T 1y9q_A          174 QNIVAYP  180 (192)
T ss_dssp             EEEEECC
T ss_pred             EEEEecC
Confidence            8877653

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=99.12  E-value=2.4e-10  Score=93.31  Aligned_cols=82  Identities=13%  Similarity=0.104  Sum_probs=68.1

Q ss_pred             CcccCceEEEEEEecCCCccc-CeeeCCCE-EEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcE
Q 018395           31 MLRQGNIGAAKLALEKNGFAL-PHYCDSAR-VAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTEL  108 (356)
Q Consensus        31 ~l~~~~~~~~~~~l~Pg~~~~-pH~h~a~e-~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l  108 (356)
                      .+...++.+..+++.||.... +|+|+..| ++||++|++.+.+   ++  +.+.|++||++++|+|.+|.+.|.+++++
T Consensus        20 ~~~~~~~~~~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i---~~--~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~   94 (125)
T 3cew_A           20 SLALTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI---DG--EKIELQAGDWLRIAPDGKRQISAASDSPI   94 (125)
T ss_dssp             HHTCSSCEEEEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE---TT--EEEEEETTEEEEECTTCCEEEEEBTTBCE
T ss_pred             ccCCCCcEEEEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE---CC--EEEEeCCCCEEEECCCCcEEEEcCCCCCE
Confidence            344567888999999999887 89996555 5559999999987   23  35899999999999999999999988889


Q ss_pred             EEEEEeeCC
Q 018395          109 VVLFLGDTS  117 (356)
Q Consensus       109 ~~l~i~~~~  117 (356)
                      +++++..+.
T Consensus        95 ~~~~i~~~~  103 (125)
T 3cew_A           95 GFLCIQVKA  103 (125)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEEcCC
Confidence            988876643

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=99.11  E-value=4.6e-10  Score=92.65  Aligned_cols=73  Identities=22%  Similarity=0.145  Sum_probs=55.5

Q ss_pred             EEEEEecCCCcccCeeeC-CCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeC
Q 018395           39 AAKLALEKNGFALPHYCD-SARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDT  116 (356)
Q Consensus        39 ~~~~~l~Pg~~~~pH~h~-a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~  116 (356)
                      +.++.+.||+...+|+|. ..|++||++|++.+.+   ++. ..+.|++||++++|+|.+|++.|.+++ +++++++.+
T Consensus        45 ~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~~~---~~~-~~~~l~~Gd~~~ip~g~~H~~~~~~~~-~~~l~~~~p  118 (134)
T 2o8q_A           45 VIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEFEY---EDI-GAVMLEAGGSAFQPPGVRHRELRHSDD-LEVLEIVSP  118 (134)
T ss_dssp             EEEECC-----CCCEEECCSCEEEEEEESEEEEEE---TTT-EEEEEETTCEEECCTTCCEEEEEECTT-CEEEEEESS
T ss_pred             EEEEecCCCCCCCCEECCCCcEEEEEEeCEEEEEE---CCc-EEEEecCCCEEEECCCCcEEeEeCCCC-eEEEEEECC
Confidence            455556689999999995 4999999999999986   221 358999999999999999999998774 688877653

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=99.11  E-value=3.9e-10  Score=104.11  Aligned_cols=78  Identities=18%  Similarity=0.181  Sum_probs=66.8

Q ss_pred             cCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC-CcEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED-TELVVL  111 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~-e~l~~l  111 (356)
                      ...+.+..++++||+....|+| ..+|++||++|++.+.+   ++  +.+.|++||++++|+|.+|++.|.++ ++++++
T Consensus       176 ~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i---~~--~~~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l  250 (261)
T 1rc6_A          176 GFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL---DN--NWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYI  250 (261)
T ss_dssp             TCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES---SS--CEEEEETTCEEEECSSEEEEEEEC----CEEEE
T ss_pred             CCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEE---CC--EEEEeCCCCEEEECCCCcEEeEeCCCCcCEEEE
Confidence            4568889999999999999999 78999999999999976   23  34899999999999999999999999 999999


Q ss_pred             EEeeC
Q 018395          112 FLGDT  116 (356)
Q Consensus       112 ~i~~~  116 (356)
                      ++.+.
T Consensus       251 ~~~d~  255 (261)
T 1rc6_A          251 YSKDC  255 (261)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            87764

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=99.10  E-value=5.6e-10  Score=89.37  Aligned_cols=76  Identities=18%  Similarity=0.311  Sum_probs=65.0

Q ss_pred             cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      +.++.+..+++.||....+|+|...|++||++|++.+.+   ++  ..+.+++||++++|+|.+|++.|.+  +++++++
T Consensus        37 ~~~~~~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~---~~--~~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~~~v  109 (115)
T 1yhf_A           37 RQDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQ--ETYRVAEGQTIVMPAGIPHALYAVE--AFQMLLV  109 (115)
T ss_dssp             ETTEEEEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TT--EEEEEETTCEEEECTTSCEEEEESS--CEEEEEE
T ss_pred             CCceEEEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE---CC--EEEEECCCCEEEECCCCCEEEEECC--CceEEEE
Confidence            346788999999999999999988999999999999986   33  3489999999999999999999987  4667766


Q ss_pred             eeC
Q 018395          114 GDT  116 (356)
Q Consensus       114 ~~~  116 (356)
                      ...
T Consensus       110 ~~~  112 (115)
T 1yhf_A          110 VVK  112 (115)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            553

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.10  E-value=8.1e-10  Score=102.74  Aligned_cols=76  Identities=18%  Similarity=0.214  Sum_probs=68.5

Q ss_pred             CceEEEEEEecCCCcccC-eeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC-CcEEEEE
Q 018395           35 GNIGAAKLALEKNGFALP-HYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED-TELVVLF  112 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~p-H~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~-e~l~~l~  112 (356)
                      ..+.+..++++||+.... |+|..+|++||++|++.+.+   ++  +.+.|++||+++||++.+|++.|.++ +++++++
T Consensus       180 ~~~~~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i---~~--~~~~l~~GD~i~i~~~~~H~~~n~~~~~~~~~l~  254 (274)
T 1sef_A          180 FDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DN--EWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVY  254 (274)
T ss_dssp             CSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TT--EEEEEETTCEEEECTTCCEEEEEECSSSCEEEEE
T ss_pred             CCEEEEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE---CC--EEEEECCCCEEEECCCCCEEEEeCCCCCCEEEEE
Confidence            578899999999999988 99988999999999999987   33  44899999999999999999999998 8999998


Q ss_pred             Eee
Q 018395          113 LGD  115 (356)
Q Consensus       113 i~~  115 (356)
                      +.+
T Consensus       255 ~~~  257 (274)
T 1sef_A          255 SKD  257 (274)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            755

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=99.10  E-value=4.2e-10  Score=90.28  Aligned_cols=74  Identities=16%  Similarity=0.161  Sum_probs=64.9

Q ss_pred             ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEee
Q 018395           36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      ++.+..+++.||+...+|+|...|++||++|++.+.+   ++  ..+.|++||++++|+|.+|.+.|.+  +++++.++.
T Consensus        33 ~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~--~~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l~v~~  105 (116)
T 2pfw_A           33 ELMAVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV---DG--VIKVLTAGDSFFVPPHVDHGAVCPT--GGILIDTFS  105 (116)
T ss_dssp             TEEEEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE---TT--EEEEECTTCEEEECTTCCEEEEESS--CEEEEEEEE
T ss_pred             ceEEEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE---CC--EEEEeCCCCEEEECcCCceeeEeCC--CcEEEEEEC
Confidence            5788999999999999999999999999999999986   33  3489999999999999999999987  467777765


Q ss_pred             C
Q 018395          116 T  116 (356)
Q Consensus       116 ~  116 (356)
                      +
T Consensus       106 p  106 (116)
T 2pfw_A          106 P  106 (116)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.09  E-value=5.7e-10  Score=90.87  Aligned_cols=82  Identities=15%  Similarity=0.146  Sum_probs=67.7

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~  300 (356)
                      ++.+.++.+.||+...+|||+. ..|+.||++|++++.+-+  |+   ...|++||++++|+|.+|...+ +++++.++.
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~-~~e~~~Vl~G~~~~~~~~--~~---~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~  111 (125)
T 3h8u_A           38 DSVVVVWHAHPGQEIASHVHPH-GQDTWTVISGEAEYHQGN--GI---VTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVS  111 (125)
T ss_dssp             SCEEEEEEECTTCEECCC-CTT-CEEEEEEEECEEEEECST--TC---EEEEETTEEEEECTTCCCEEEECSSSCEEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCC-CeEEEEEEEeEEEEEECC--Ce---EEEeCCCCEEEECCCCEEEeEeCCCCCEEEEE
Confidence            4789999999999999999997 799999999999886522  22   2579999999999999999855 778899999


Q ss_pred             EEcCCCCce
Q 018395          301 IITTPNPIF  309 (356)
Q Consensus       301 ~~~~~~p~~  309 (356)
                      +....++.+
T Consensus       112 v~~p~~~~~  120 (125)
T 3h8u_A          112 VVAPGNAGF  120 (125)
T ss_dssp             EEESTTCCC
T ss_pred             EECCCcccc
Confidence            887665443

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=99.07  E-value=5.1e-10  Score=91.22  Aligned_cols=75  Identities=15%  Similarity=0.104  Sum_probs=62.6

Q ss_pred             cCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      ...+++..++++||+..  ||| ..+|++||++|++++.+   ++  ..+.|++||+++||+|..|++.|.+ +++++++
T Consensus        37 ~~~~~~~~~~~~pG~~~--~~H~~~~E~~~Vl~G~~~~~~---~g--~~~~l~~GD~v~ip~g~~H~~~~~~-~~~~~l~  108 (119)
T 3lwc_A           37 GGPITIGYGRYAPGQSL--TETMAVDDVMIVLEGRLSVST---DG--ETVTAGPGEIVYMPKGETVTIRSHE-EGALTAY  108 (119)
T ss_dssp             -CCCEEEEEEECTTCEE--EEECSSEEEEEEEEEEEEEEE---TT--EEEEECTTCEEEECTTCEEEEEEEE-EEEEEEE
T ss_pred             CCCEEEEEEEECCCCCc--CccCCCCEEEEEEeCEEEEEE---CC--EEEEECCCCEEEECCCCEEEEEcCC-CCeEEEE
Confidence            35688999999999865  555 99999999999999987   33  3489999999999999999998875 5688888


Q ss_pred             EeeC
Q 018395          113 LGDT  116 (356)
Q Consensus       113 i~~~  116 (356)
                      +..+
T Consensus       109 v~~P  112 (119)
T 3lwc_A          109 VTYP  112 (119)
T ss_dssp             EEEC
T ss_pred             EECC
Confidence            7654

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.05  E-value=6.8e-10  Score=94.99  Aligned_cols=146  Identities=13%  Similarity=0.024  Sum_probs=93.4

Q ss_pred             ceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCC--
Q 018395          188 MAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG--  265 (356)
Q Consensus       188 ~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g--  265 (356)
                      ...++.+.++......|.+.+.+........  -++.+.++.+.||+...+|||.  ..|+.||++|++++.+-+..+  
T Consensus         8 ~v~~~~~~~~~~~~~~G~~~~~l~~~~~~g~--~~~~~~~~~~~pg~~~~~H~H~--~~E~~~Vl~G~~~~~~~~~~~~~   83 (163)
T 1lr5_A            8 LVRDISQMPQSSYGIEGLSHITVAGALNHGM--KEVEVWLQTISPGQRTPIHRHS--CEEVFTVLKGKGTLLMGSSSLKY   83 (163)
T ss_dssp             SEEEGGGSCCBCTTCTTEEEEEEECHHHHCC--SSEEEEEEEECTTCBCCEEEES--SCEEEEEEECCEEEEECCSSSSS
T ss_pred             EecChHHCChhhccCCCcceEEEeccccCCC--CcEEEEEEEECCCCcCCCeECC--CCeEEEEEeCEEEEEECCccccc
Confidence            3455665555433344555554422111111  1477889999999999999995  579999999999999876321  


Q ss_pred             -ceEEEEEecCCcEEEEcCCcEEEEee-C-CCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHHHH
Q 018395          266 -KRVLETTVKAGNLFIVPRFYVVSKIA-D-PDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQ  340 (356)
Q Consensus       266 -~~~~~~~l~~Gdv~vvP~g~~h~~~~-~-~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~~~  340 (356)
                       .+.-...|++||+++||+|.+|...+ + +++++++.+....... .+..  .+++..+....+...+.++...+++
T Consensus        84 ~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  158 (163)
T 1lr5_A           84 PGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAK-IFLY--DDWSMPHTAAVLKFPFVWDEDCFEA  158 (163)
T ss_dssp             CCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEEEEESSSCC-EEEE--SSTTSCGGGCEEESSCTTTHHHHHH
T ss_pred             cCccEEEEeCCCCEEEECCCCcEEeEeCCCCCCEEEEEEECCCCcc-cccc--cccccCCcCccceeccccccccccc
Confidence             00113579999999999999999954 6 6789999887554322 2222  2444444444444445566655554

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.05  E-value=2e-09  Score=90.74  Aligned_cols=83  Identities=13%  Similarity=0.066  Sum_probs=69.0

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEe-eCCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI-ADPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~-~~~~~~~~~~  300 (356)
                      ++++..+.+.||+...+|||+. ..|+.||++|++++.+-+......+...|++||+++||+|.+|... .+++++.++.
T Consensus        42 ~~~~~~~~l~pg~~~~~H~H~~-~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~  120 (148)
T 2oa2_A           42 HLQVTLMSIQVGEDIGLEIHPH-LDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYS  120 (148)
T ss_dssp             SCEEEEEEECTTCBCCCBCCTT-CEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEE
T ss_pred             ceEEEEEEECCCCccCceECCC-CcEEEEEEeCEEEEEECCccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEE
Confidence            5778899999999999999997 8899999999999998764432223468999999999999999995 4677898888


Q ss_pred             EEcCC
Q 018395          301 IITTP  305 (356)
Q Consensus       301 ~~~~~  305 (356)
                      +....
T Consensus       121 i~~~~  125 (148)
T 2oa2_A          121 IYAPP  125 (148)
T ss_dssp             EEESC
T ss_pred             EECCC
Confidence            76543

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=99.03  E-value=2.8e-09  Score=97.56  Aligned_cols=78  Identities=13%  Similarity=0.103  Sum_probs=69.0

Q ss_pred             cCceEEEEEEecCCCcccCe-eeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPH-YCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH-~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      ..++.+..++|+||+....| .|..+|.+|||+|++.+.+   ++  +.+.|++||+++++++.+|++.|.|+++++++.
T Consensus       162 ~~~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~--~~~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl~  236 (246)
T 1sfn_A          162 AFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EE--NYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLL  236 (246)
T ss_dssp             TCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TT--EEEEEETTCEEEECTTCCEEEEEESSSCEEEEE
T ss_pred             CCCeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CC--EEEEcCCCCEEEECCCCCEEEEcCCCCCEEEEE
Confidence            46889999999999999874 5588999999999999986   33  448999999999999999999999999999998


Q ss_pred             EeeC
Q 018395          113 LGDT  116 (356)
Q Consensus       113 i~~~  116 (356)
                      +-|-
T Consensus       237 ~kd~  240 (246)
T 1sfn_A          237 YKDM  240 (246)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7664

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.03  E-value=6.6e-10  Score=101.54  Aligned_cols=78  Identities=12%  Similarity=-0.028  Sum_probs=68.8

Q ss_pred             CceEEEEEEecC-CCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           35 GNIGAAKLALEK-NGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        35 ~~~~~~~~~l~P-g~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      ..+.+..++++| |+...+|+|..+|++||++|++.+.+   ++  ..+.|++||++++|+|.+|.+.|.++++++++.+
T Consensus       143 ~~~~~~~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i---~~--~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l~v  217 (243)
T 3h7j_A          143 DWVEIMLAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV---EG--CTVEMKFGTAYFCEPREDHGAINRSEKESKSINI  217 (243)
T ss_dssp             TTEEEEEEEECTTTEEEEEECCSSEEEEEECSSCEEEEE---TT--EEEEECTTCEEEECTTCCEEEEECSSSCEEEEEE
T ss_pred             ceeEEEEEEECCCCCcCCCEeCCCcEEEEEEECEEEEEE---CC--EEEEECCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            446677889999 99999999988899999999999987   33  3489999999999999999999999999999998


Q ss_pred             eeCC
Q 018395          114 GDTS  117 (356)
Q Consensus       114 ~~~~  117 (356)
                      +.+.
T Consensus       218 ~~p~  221 (243)
T 3h7j_A          218 FFPP  221 (243)
T ss_dssp             EESC
T ss_pred             EcCC
Confidence            8753

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=99.03  E-value=1.7e-09  Score=104.25  Aligned_cols=90  Identities=17%  Similarity=0.102  Sum_probs=73.7

Q ss_pred             CCeEEEEeCCC-CCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCC
Q 018395           17 NGGSYHAWCPN-ELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG   95 (356)
Q Consensus        17 ~~G~i~~~~~~-~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G   95 (356)
                      +|+.++..++. ..+.+.  .+++....|+||+...+|+|...|++||++|+|++.|   ++  +++++++||+++||++
T Consensus       249 ~G~~~~~~np~t~~~~~~--ti~~~~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v---~~--~~~~~~~GD~~~vP~~  321 (354)
T 2d40_A          249 DGYKMRYVNPVTGGYPMP--SMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVII---GN--ETFSFSAKDIFVVPTW  321 (354)
T ss_dssp             TBEEEEECCTTTSSCSSS--SCEEEEEEECTTCBCCCBEESSCEEEEEEEEEEEEEE---TT--EEEEEETTCEEEECTT
T ss_pred             CCeEEEEeCCCcCCCCCC--cceeEEEEECCCCCCCceecCCcEEEEEEeCeEEEEE---CC--EEEEEcCCCEEEECCC
Confidence            56677777754 344443  4677788999999999999966699999999999998   33  4589999999999999


Q ss_pred             cEEEEEecCCCcEEEEEEee
Q 018395           96 VVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        96 ~~H~~~N~g~e~l~~l~i~~  115 (356)
                      ..|++.|+  +++.++++.+
T Consensus       322 ~~H~~~n~--e~~~l~~~~d  339 (354)
T 2d40_A          322 HGVSFQTT--QDSVLFSFSD  339 (354)
T ss_dssp             CCEEEEEE--EEEEEEEEES
T ss_pred             CeEEEEeC--CCEEEEEEcC
Confidence            99999994  6788888755

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=99.03  E-value=1.5e-09  Score=86.96  Aligned_cols=75  Identities=11%  Similarity=0.108  Sum_probs=63.8

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      .++.+..+.+.||....+|+|...|++||++|++.+.+   ++  ..+.|++||++++|+|.+|.+.|.  ++++++++.
T Consensus        36 ~~~~~~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i---~~--~~~~l~~Gd~i~i~~~~~H~~~~~--~~~~~~~i~  108 (114)
T 2ozj_A           36 DRVQISLFSFADGESVSEEEYFGDTLYLILQGEAVITF---DD--QKIDLVPEDVLMVPAHKIHAIAGK--GRFKMLQIT  108 (114)
T ss_dssp             SSEEEEEEEEETTSSCCCBCCSSCEEEEEEEEEEEEEE---TT--EEEEECTTCEEEECTTCCBEEEEE--EEEEEEEEE
T ss_pred             CCceEEEEEECCCCccccEECCCCeEEEEEeCEEEEEE---CC--EEEEecCCCEEEECCCCcEEEEeC--CCcEEEEEE
Confidence            35677888899999999999999999999999999987   33  358999999999999999999996  357777765


Q ss_pred             eC
Q 018395          115 DT  116 (356)
Q Consensus       115 ~~  116 (356)
                      ..
T Consensus       109 ~~  110 (114)
T 2ozj_A          109 LI  110 (114)
T ss_dssp             EC
T ss_pred             Ec
Confidence            43

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=99.02  E-value=3.5e-09  Score=97.68  Aligned_cols=77  Identities=16%  Similarity=0.200  Sum_probs=68.4

Q ss_pred             cCceEEEEEEecCCCcccC-eeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALP-HYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~p-H~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      ..++.+.+++++||+.... |.|..++.+|||+|+|++.+   ++  ..+++++||+++++++.+|++.|.|++++++|.
T Consensus       183 ~~d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~l---~~--~~~~V~~GD~i~~~~~~~h~~~n~G~e~~~yl~  257 (266)
T 4e2q_A          183 AYDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRL---GD--NWYPVQAGDVIWMAPFVPQWYAALGKTRSRYLL  257 (266)
T ss_dssp             TCSEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEEE---TT--EEEEEETTCEEEECTTCCEEEEEESSSCEEEEE
T ss_pred             ccceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEEE---CC--EEEEecCCCEEEECCCCcEEEEeCCCCCEEEEE
Confidence            5689999999999999986 56688899999999999986   33  348999999999999999999999999999997


Q ss_pred             Eee
Q 018395          113 LGD  115 (356)
Q Consensus       113 i~~  115 (356)
                      --|
T Consensus       258 ykd  260 (266)
T 4e2q_A          258 YKD  260 (266)
T ss_dssp             EEE
T ss_pred             Ecc
Confidence            544

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=99.00  E-value=1.3e-09  Score=90.62  Aligned_cols=73  Identities=16%  Similarity=0.231  Sum_probs=61.5

Q ss_pred             CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      ..+.+..++++||   ..||| ..+|++|||+|++++.+   ++  ..+.|++||+++||+|..|.+.|.  ++++++++
T Consensus        55 ~~~~~~~~~~~pG---~~~~h~~~~E~~~VLeG~~~l~~---~g--~~~~l~~GD~i~~p~g~~h~~~~~--~~~~~l~v  124 (133)
T 2pyt_A           55 SSMAAGFMQWDNA---FFPWTLNYDEIDMVLEGELHVRH---EG--ETMIAKAGDVMFIPKGSSIEFGTP--TSVRFLYV  124 (133)
T ss_dssp             CSSEEEEEEEEEE---EEEEECSSEEEEEEEEEEEEEEE---TT--EEEEEETTCEEEECTTCEEEEEEE--EEEEEEEE
T ss_pred             CcEEEEEEEECCC---CccccCCCCEEEEEEECEEEEEE---CC--EEEEECCCcEEEECCCCEEEEEeC--CCEEEEEE
Confidence            3688999999999   45777 89999999999999986   33  347999999999999999999984  56888888


Q ss_pred             eeCC
Q 018395          114 GDTS  117 (356)
Q Consensus       114 ~~~~  117 (356)
                      ..+.
T Consensus       125 ~~p~  128 (133)
T 2pyt_A          125 AWPA  128 (133)
T ss_dssp             EEST
T ss_pred             EcCC
Confidence            7643

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.98  E-value=7e-09  Score=100.87  Aligned_cols=77  Identities=16%  Similarity=0.135  Sum_probs=68.4

Q ss_pred             cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecC-CCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKE-DTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g-~e~l~~l~  112 (356)
                      ...+.+....|+||....+|.|..++++||++|+|.+.+   ++  +.+.+++||++++|+|..|.+.|.+ ++++.+++
T Consensus       291 ~~tl~~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V---~g--e~~~~~~GD~~~iP~g~~H~~~N~g~~e~~~ll~  365 (394)
T 3bu7_A          291 MLTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV---GG--KRFDWSEHDIFCVPAWTWHEHCNTQERDDACLFS  365 (394)
T ss_dssp             SSSCEEEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE---TT--EEEEECTTCEEEECTTCCEEEEECCSSCCEEEEE
T ss_pred             CCeeeEEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE---CC--EEEEEeCCCEEEECCCCeEEeEeCCCCCCeEEEE
Confidence            356888999999999999999988899999999998876   33  3489999999999999999999998 78999998


Q ss_pred             Eee
Q 018395          113 LGD  115 (356)
Q Consensus       113 i~~  115 (356)
                      +.+
T Consensus       366 i~D  368 (394)
T 3bu7_A          366 FND  368 (394)
T ss_dssp             EES
T ss_pred             eeC
Confidence            765

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=98.98  E-value=2.5e-07  Score=83.81  Aligned_cols=183  Identities=13%  Similarity=0.119  Sum_probs=107.5

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      .+++++.+.+ .|......+ ..+|++|||+|++++..   ++  ....+++||+++||+|..|.|...+.-  +.+++.
T Consensus        45 ~~~~~G~~~~-~g~~~v~~~-p~dE~~~VleG~~~lt~---~g--~~~~~~~Gd~~~ip~G~~~~w~~~~~~--~~~y~~  115 (238)
T 3myx_A           45 QGIAAGIVEF-GTALSVEAY-PYTEMLVMHRGSVTLTS---GT--DSVTLSTGESAVIGRGTQVRIDAQPES--LWAFCA  115 (238)
T ss_dssp             TSEEEEEEEE-CSEEEESSC-SSEEEEEEEESEEEEEE---TT--EEEEEETTCEEEECTTCCEEEEECTTE--EEEEEE
T ss_pred             CCeEEEEEEe-ccccccccC-CCcEEEEEEEeEEEEEC---CC--eEEEEcCCCEEEECCCCEEEEEecCCe--EEEEEe
Confidence            4688888998 666554332 45799999999999975   33  347999999999999999999887654  333333


Q ss_pred             eCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceeeccC
Q 018395          115 DTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEE  194 (356)
Q Consensus       115 ~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~l~~  194 (356)
                      .+. ...|..                                         ..|+++.....+ .|..   ...+--+..
T Consensus       116 ~~~-~~~p~~-----------------------------------------~~~~~i~~~~~l-~P~~---~p~p~~~l~  149 (238)
T 3myx_A          116 STQ-ASGPDK-----------------------------------------SGITALDRLALL-TPSS---PPDPSIMIS  149 (238)
T ss_dssp             ECS-CCSCCC-----------------------------------------CSEEEECTTCCC-EEEC---CCCGGGBSS
T ss_pred             ccC-CCCCCC-----------------------------------------CccEEecCCCCC-CCCC---CCChhheec
Confidence            320 012211                                         012222211100 0000   000001112


Q ss_pred             CCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEec
Q 018395          195 APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVK  274 (356)
Q Consensus       195 ~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~  274 (356)
                      ..|...    .+....+.       +-.+++..-...||... + |+-. .+|++||++|+++++.  .+|+.   .+++
T Consensus       150 G~P~~~----~~~~~~~~-------~g~~~~GiW~~tpG~~~-~-~~~~-~~E~~~ILeG~v~lt~--~~G~~---~~~~  210 (238)
T 3myx_A          150 PLPQCR----SNNLFEDT-------ASTLRIGVWDSTPYERI-S-RPHK-IHELMNLIEGRVVLSL--ENGSS---LTVN  210 (238)
T ss_dssp             CCCCEE----EEEEEECS-------SSSCEEEEEEECCEEBC-C-EECS-SCEEEEEEECCEEEEE--TTSCE---EEEC
T ss_pred             CCchhe----eeEEEECC-------CCCEEEeEEEeCCCEEE-C-CcCC-CCEEEEEEEeEEEEEe--CCCCE---EEEC
Confidence            222210    11111110       11366777778888733 2 2224 6799999999998864  35644   5799


Q ss_pred             CCcEEEEcCCcEEEEee
Q 018395          275 AGNLFIVPRFYVVSKIA  291 (356)
Q Consensus       275 ~Gdv~vvP~g~~h~~~~  291 (356)
                      +||+++||+|+.-....
T Consensus       211 aGD~~~~P~G~~~tWev  227 (238)
T 3myx_A          211 TGDTVFVAQGAPCKWTS  227 (238)
T ss_dssp             TTCEEEECTTCEEEEEE
T ss_pred             CCCEEEECCCCEEEEEE
Confidence            99999999999876643

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.98  E-value=2.3e-09  Score=86.20  Aligned_cols=79  Identities=13%  Similarity=0.087  Sum_probs=60.3

Q ss_pred             ccCceEEEEEEecCCCcccC---eeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC-cE
Q 018395           33 RQGNIGAAKLALEKNGFALP---HYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT-EL  108 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~~p---H~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e-~l  108 (356)
                      .+.++.+.++. .+|....+   |.|..+|++||++|++++.+   +++...+.|++||.++||+|.+|.+.|.+++ ++
T Consensus        27 ~~~~~~i~~i~-~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~---~~~~~~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~  102 (112)
T 2opk_A           27 ERKGLKIERII-SNGQASPPGFWYDSPQDEWVMVVSGSAGIEC---EGDTAPRVMRPGDWLHVPAHCRHRVAWTDGGEPT  102 (112)
T ss_dssp             EETTEEEEEEE-ESSCCCCTTCCBCCSSEEEEEEEESCEEEEE---TTCSSCEEECTTEEEEECTTCCEEEEEECSSSCE
T ss_pred             cCCCEEEEEEE-eCCccCCCCccccCCccEEEEEEeCeEEEEE---CCEEEEEEECCCCEEEECCCCcEEEEeCCCCCCE
Confidence            34567777775 45655555   44489999999999999987   2322117999999999999999999998876 67


Q ss_pred             EEEEEee
Q 018395          109 VVLFLGD  115 (356)
Q Consensus       109 ~~l~i~~  115 (356)
                      .+++++.
T Consensus       103 ~~l~v~~  109 (112)
T 2opk_A          103 VWLAVHC  109 (112)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7788765

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=98.97  E-value=5e-09  Score=81.55  Aligned_cols=75  Identities=12%  Similarity=-0.009  Sum_probs=64.4

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~  300 (356)
                      ++.+..+.+.||+...+|||+. ..|+.||++|++++.+-   + +  ...|++||++++|+|.+|...+ +++++.++.
T Consensus        27 ~~~~~~~~~~pg~~~~~H~H~~-~~e~~~v~~G~~~~~~~---~-~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~   99 (105)
T 1v70_A           27 RMLYDLYALLPGQAQKVHVHEG-SDKVYYALEGEVVVRVG---E-E--EALLAPGMAAFAPAGAPHGVRNESASPALLLV   99 (105)
T ss_dssp             TEEEEEEEECTTCEEEEECCSS-CEEEEEEEESCEEEEET---T-E--EEEECTTCEEEECTTSCEEEECCSSSCEEEEE
T ss_pred             ceEEEEEEECCCCcCCccCCCC-CcEEEEEEeCEEEEEEC---C-E--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            5788999999999999999987 78999999999998763   2 2  3579999999999999999855 667888888


Q ss_pred             EEc
Q 018395          301 IIT  303 (356)
Q Consensus       301 ~~~  303 (356)
                      +..
T Consensus       100 v~~  102 (105)
T 1v70_A          100 VTA  102 (105)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            764

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.96  E-value=3.2e-09  Score=90.12  Aligned_cols=89  Identities=12%  Similarity=0.076  Sum_probs=66.5

Q ss_pred             eeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEe--CeEEEEEEcCCCceEEEEEcCCCEE
Q 018395           14 YGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQ--GSGVAGIVLPEKEEKVVAIKKGDGI   90 (356)
Q Consensus        14 ~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~--G~~~~~vv~~~~~~~~~~l~~GDv~   90 (356)
                      .+..+|..+.....+    ....+++..++  ++....+||| ..+|++||++  |++.+.+   ++  +.+.|++||++
T Consensus        28 ~~~~~G~srR~l~~~----~~fp~sv~~v~--~g~~~~~H~H~~~~E~~yVLe~~G~g~v~i---dg--e~~~l~~GD~v   96 (157)
T 4h7l_A           28 VACPCGWAQRAFGHD----AGTSVSVHYTQ--ITKAARTHYHREHQEIYVVLDHAAHATIEL---NG--QSYPLTKLLAI   96 (157)
T ss_dssp             EEETTEEEEEESCGG----GCCSCEEEEEE--ECSCCCCBBCSSCEEEEEEEEECTTCEEEE---TT--EEEECCTTEEE
T ss_pred             ccCCCCeeeEEeEcC----CCCcEEEEEEe--CCCCccceECCCCcEEEEEEecCcEEEEEE---CC--EEEEeCCCCEE
Confidence            345778877655422    11223444444  4556789999 7789999999  9999987   33  34899999999


Q ss_pred             EeCCCcEEEEEecCCCcEEEEEEeeCC
Q 018395           91 ALPFGVVTWWYNKEDTELVVLFLGDTS  117 (356)
Q Consensus        91 ~iP~G~~H~~~N~g~e~l~~l~i~~~~  117 (356)
                      +||+|..|++.+    +++++++..+.
T Consensus        97 ~IPpg~~H~i~g----~l~~L~I~~Pp  119 (157)
T 4h7l_A           97 SIPPLVRHRIVG----EATIINIVSPP  119 (157)
T ss_dssp             EECTTCCEEEES----CEEEEEEEESS
T ss_pred             EECCCCeEeeEC----CEEEEEEECCC
Confidence            999999999983    59999988754

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=98.95  E-value=6.7e-09  Score=91.39  Aligned_cols=83  Identities=13%  Similarity=0.246  Sum_probs=69.6

Q ss_pred             CceeEEEEecCCCe------eccccccc-CCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCC
Q 018395          222 GCGADLVRLDGKAM------CSPGFSCD-SALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADP  293 (356)
Q Consensus       222 ~~s~~~v~l~~g~~------~~PH~h~~-~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~  293 (356)
                      ++.+..+.|.||+.      ..+|||+. +..|+.||++|++.+.+-+..|+ .+...|++||+++||+|.+|.. |.++
T Consensus        66 ~l~~~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~-~~~~~l~~GD~v~ip~g~~H~~~N~g~  144 (190)
T 1x82_A           66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGD-AKWISMEPGTVVYVPPYWAHRTVNIGD  144 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCC-EEEEEECTTCEEEECTTCEEEEEECSS
T ss_pred             CeEEEEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCc-EEEEEECCCcEEEECCCCeEEEEECCc
Confidence            46678889999998      77999983 15799999999999999887664 3567899999999999999998 4578


Q ss_pred             CCeEEEEEEcCC
Q 018395          294 DGLAWFSIITTP  305 (356)
Q Consensus       294 ~~~~~~~~~~~~  305 (356)
                      ++++++++....
T Consensus       145 ~~~~~l~v~~~~  156 (190)
T 1x82_A          145 EPFIFLAIYPAD  156 (190)
T ss_dssp             SCEEEEEEEETT
T ss_pred             ccEEEEEEECCC
Confidence            889999887544

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=98.94  E-value=3.5e-09  Score=83.68  Aligned_cols=76  Identities=16%  Similarity=0.117  Sum_probs=62.1

Q ss_pred             cCceEEEEEEecCCCcccCeeeC-CCEE-EEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYCD-SARV-AYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~-a~e~-~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      +.++.+..+++.||....+|+|. ..|+ +||++|++++.+ . ++  ..+.|++||++++|+|..|++.|.++  .+++
T Consensus        30 ~~~~~~~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~-~-~~--~~~~l~~Gd~~~ip~~~~H~~~~~~~--~~~l  103 (110)
T 2q30_A           30 SENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG-D-GD--AVIPAPRGAVLVAPISTPHGVRAVTD--MKVL  103 (110)
T ss_dssp             CSSCEEEEEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC-G-GG--CEEEECTTEEEEEETTSCEEEEESSS--EEEE
T ss_pred             CCCEEEEEEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe-C-CC--EEEEECCCCEEEeCCCCcEEEEEcCC--cEEE
Confidence            34678889999999999999995 4788 899999999875 1 12  34899999999999999999999865  4566


Q ss_pred             EEee
Q 018395          112 FLGD  115 (356)
Q Consensus       112 ~i~~  115 (356)
                      .++.
T Consensus       104 ~~~~  107 (110)
T 2q30_A          104 VTIA  107 (110)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            6554

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=98.94  E-value=3e-09  Score=90.82  Aligned_cols=79  Identities=13%  Similarity=0.188  Sum_probs=66.9

Q ss_pred             CceeEEEEecCCC-eecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCC-cEEEEe-eCCCCeEE
Q 018395          222 GCGADLVRLDGKA-MCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRF-YVVSKI-ADPDGLAW  298 (356)
Q Consensus       222 ~~s~~~v~l~~g~-~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g-~~h~~~-~~~~~~~~  298 (356)
                      ++++..+.+.||+ ...+|||+. ..|+.||++|++.+.+-+    +  ...|++||+++||+| .+|... .+++++++
T Consensus        45 ~~~~~~~~l~pg~~~~~~H~H~~-~~E~~~Vl~G~~~~~~~~----~--~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~  117 (162)
T 3l2h_A           45 HMGIHLIQIEPGKESTEYHLHHY-EEEAVYVLSGKGTLTMEN----D--QYPIAPGDFVGFPCHAAAHSISNDGTETLVC  117 (162)
T ss_dssp             SEEEEEEEECTTCBSSSSBEESS-CCEEEEEEESCEEEEETT----E--EEEECTTCEEEECTTSCCEEEECCSSSCEEE
T ss_pred             eEEEEEEEECCCCcCCCCccCCC-CCEEEEEEEEEEEEEECC----E--EEEeCCCCEEEECCCCceEEeEeCCCCCEEE
Confidence            4789999999999 589999987 899999999999998532    2  357999999999997 999994 47788999


Q ss_pred             EEEEcCCCC
Q 018395          299 FSIITTPNP  307 (356)
Q Consensus       299 ~~~~~~~~p  307 (356)
                      +.+.+...+
T Consensus       118 l~v~~p~~~  126 (162)
T 3l2h_A          118 LVIGQRLDQ  126 (162)
T ss_dssp             EEEEECCSE
T ss_pred             EEEECCCCC
Confidence            998766554

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.91  E-value=1.4e-08  Score=96.37  Aligned_cols=72  Identities=13%  Similarity=0.119  Sum_probs=61.0

Q ss_pred             EEEEEecC-CCcccCeeeC-CCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeC
Q 018395           39 AAKLALEK-NGFALPHYCD-SARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDT  116 (356)
Q Consensus        39 ~~~~~l~P-g~~~~pH~h~-a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~  116 (356)
                      ...+++.| |....+|||. .+|++||++|++++.+   ++  ..+.|++||++++|++.+|++.|.++ ++++++++..
T Consensus       219 ~~~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~~i---~~--~~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~  292 (337)
T 1y3t_A          219 IVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT---DG--QEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVP  292 (337)
T ss_dssp             EEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE---TT--EEEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEES
T ss_pred             EEEEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEEEE---CC--EEEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcC
Confidence            44556666 6777899995 8999999999999987   33  45899999999999999999999988 7999988754

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=98.90  E-value=2.9e-09  Score=97.06  Aligned_cols=81  Identities=11%  Similarity=0.069  Sum_probs=66.0

Q ss_pred             cCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEE-------ccC------C-ceEEEEEecCCcEEEEcCCcE
Q 018395          221 VGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIV-------GPD------G-KRVLETTVKAGNLFIVPRFYV  286 (356)
Q Consensus       221 l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv-------~~~------g-~~~~~~~l~~Gdv~vvP~g~~  286 (356)
                      .++++..+.+.||+...||||++ ..|+.||++|++++.+-       +..      | .+++...+++||+++||+|.+
T Consensus        41 ~~~~~~~~~~~PG~~~~~H~H~~-~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~  119 (239)
T 2xlg_A           41 IGFAIAHAQIPPGGGPMPHIHYF-INEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYM  119 (239)
T ss_dssp             EEEEEEEEEECTTCSCCSEEESS-EEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEE
T ss_pred             CCEEEEEEEECCCCcCCCeECCC-ccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCC
Confidence            35788999999999999999998 99999999999999771       111      1 134456899999999999999


Q ss_pred             EEE-eeCCCCeEE-EEEE
Q 018395          287 VSK-IADPDGLAW-FSII  302 (356)
Q Consensus       287 h~~-~~~~~~~~~-~~~~  302 (356)
                      |.. |.+++++++ +.++
T Consensus       120 H~~~N~~~~~~~~~l~~~  137 (239)
T 2xlg_A          120 HGFVNPTDKTLPIVFVWM  137 (239)
T ss_dssp             EEEECCSSSCEEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEEEE
Confidence            999 557777888 6665

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=98.89  E-value=1.4e-08  Score=80.29  Aligned_cols=77  Identities=18%  Similarity=0.144  Sum_probs=65.0

Q ss_pred             CceeEEEEecCCCeeccc--ccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEE
Q 018395          222 GCGADLVRLDGKAMCSPG--FSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAW  298 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH--~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~  298 (356)
                      ++.+..+.+.||+...+|  ||++ ..|+.||++|++++.+-   + +  ...|++||++++|+|.+|...+ +++++.+
T Consensus        20 ~~~~~~~~~~pg~~~~~h~~~H~~-~~e~~~vl~G~~~~~~~---~-~--~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~   92 (113)
T 2gu9_A           20 QVQAAEMVIAPGDREGGPDNRHRG-ADQWLFVVDGAGEAIVD---G-H--TQALQAGSLIAIERGQAHEIRNTGDTPLKT   92 (113)
T ss_dssp             TEEEEEEEECTTCEEECCCSSSCC-CEEEEEEEECCEEEEET---T-E--EEEECTTEEEEECTTCCEEEECCSSSCEEE
T ss_pred             cEEEEEEEECCCCccCCcccccCC-CcEEEEEEeCEEEEEEC---C-E--EEEeCCCCEEEECCCCcEEeEcCCCCCEEE
Confidence            578899999999999988  9987 78999999999998872   2 2  3579999999999999999855 6778888


Q ss_pred             EEEEcCC
Q 018395          299 FSIITTP  305 (356)
Q Consensus       299 ~~~~~~~  305 (356)
                      +.+....
T Consensus        93 ~~v~~~~   99 (113)
T 2gu9_A           93 VNFYHPP   99 (113)
T ss_dssp             EEEEESC
T ss_pred             EEEECCC
Confidence            8876543

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.89  E-value=1.7e-08  Score=85.33  Aligned_cols=72  Identities=14%  Similarity=0.248  Sum_probs=60.3

Q ss_pred             ceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           36 NIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      .++++.++++ ++  ..||| ..+|+.||++|++.+.+   ++  .++.|++||+++||+|..|.+.|.  ++++++++.
T Consensus        65 ~~s~g~~~~e-~~--~~~~~~~~eE~~yVLeG~~~l~i---~g--~~~~l~~GD~i~iP~G~~h~~~n~--~~a~~l~V~  134 (151)
T 4axo_A           65 RLGCGMMEMK-ET--TFDWTLNYDEIDYVIDGTLDIII---DG--RKVSASSGELIFIPKGSKIQFSVP--DYARFIYVT  134 (151)
T ss_dssp             SCEEEEEEEE-EE--EEEEECSSEEEEEEEEEEEEEEE---TT--EEEEEETTCEEEECTTCEEEEEEE--EEEEEEEEE
T ss_pred             cEEEEEEEEc-Cc--cccEeCCCcEEEEEEEeEEEEEE---CC--EEEEEcCCCEEEECCCCEEEEEeC--CCEEEEEEE
Confidence            6888888887 33  35677 89999999999999986   33  348999999999999999999997  579999987


Q ss_pred             eCC
Q 018395          115 DTS  117 (356)
Q Consensus       115 ~~~  117 (356)
                      .+.
T Consensus       135 ~P~  137 (151)
T 4axo_A          135 YPA  137 (151)
T ss_dssp             ECS
T ss_pred             CCC
Confidence            754

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.89  E-value=6.3e-09  Score=97.00  Aligned_cols=79  Identities=18%  Similarity=0.173  Sum_probs=69.8

Q ss_pred             cCceEEEEEEecCCCcccC-eeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALP-HYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~p-H~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      ..++.+..++|+||+.... |.|.-++.+|||+|++.+.+   ++  +.++|++||++++++|.+|++.|.|+++++++.
T Consensus       188 ~~~~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~---~~--~~~~v~~GD~~~~~~~~~h~~~n~g~~~~~yl~  262 (278)
T 1sq4_A          188 RHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL---NQ--DWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLL  262 (278)
T ss_dssp             TCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE---TT--EEEEEETTCEEEEEESCCEEEECCSSSCEEEEE
T ss_pred             CCCeEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE---CC--EEEEeCCCCEEEECCCCCEEEEcCCCCCEEEEE
Confidence            4689999999999999986 45577899999999999976   33  448999999999999999999999999999999


Q ss_pred             EeeCC
Q 018395          113 LGDTS  117 (356)
Q Consensus       113 i~~~~  117 (356)
                      +.|-+
T Consensus       263 ~~d~n  267 (278)
T 1sq4_A          263 YKDVN  267 (278)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            88854

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=98.84  E-value=2e-08  Score=86.50  Aligned_cols=95  Identities=11%  Similarity=0.104  Sum_probs=73.5

Q ss_pred             CCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEc
Q 018395          203 NGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVP  282 (356)
Q Consensus       203 ~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP  282 (356)
                      .|.....+...+.. ....++.+..+.+.||+...+|||+  ..|+.||++|++.+.+-+    +  ...|++||+++||
T Consensus        37 ~g~~~~~L~~~~~g-~~~~~~~~~~~~l~pG~~~~~H~H~--~~E~~~Vl~G~~~~~i~~----~--~~~l~~Gd~i~ip  107 (167)
T 3ibm_A           37 SGARRQTLVGRPAG-QEAPAFETRYFEVEPGGYTTLERHE--HTHVVMVVRGHAEVVLDD----R--VEPLTPLDCVYIA  107 (167)
T ss_dssp             CCEEEEEEECTTTT-CCSSSEEEEEEEECTTCBCCCBBCS--SCEEEEEEESEEEEEETT----E--EEEECTTCEEEEC
T ss_pred             CCcEEEEEECCCCC-CCCCcEEEEEEEECCCCCCCCccCC--CcEEEEEEeCEEEEEECC----E--EEEECCCCEEEEC
Confidence            35555555444331 1223577899999999999999995  689999999999988632    2  3579999999999


Q ss_pred             CCcEEEE-eeC-CCCeEEEEEEcCCC
Q 018395          283 RFYVVSK-IAD-PDGLAWFSIITTPN  306 (356)
Q Consensus       283 ~g~~h~~-~~~-~~~~~~~~~~~~~~  306 (356)
                      +|.+|.. +.+ ++++.++++....+
T Consensus       108 ~~~~H~~~n~~~~~~~~~l~i~~~~~  133 (167)
T 3ibm_A          108 PHAWHQIHATGANEPLGFLCIVDSDR  133 (167)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEEESSC
T ss_pred             CCCcEEEEeCCCCCCEEEEEEEeCCc
Confidence            9999999 557 78899999876554

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=98.83  E-value=9.3e-09  Score=92.92  Aligned_cols=74  Identities=20%  Similarity=0.246  Sum_probs=63.4

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      ..+.+..++++||+...+|+|..+|++||++|++.+.+   ++  ..+.|++||.+++|+|.+|++.|. .++++++.+.
T Consensus       151 ~~~~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~g--~~~~l~~Gd~i~ip~~~~H~~~~~-~~~~~~ll~~  224 (227)
T 3rns_A          151 PNLVMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV---DG--KPFIVKKGESAVLPANIPHAVEAE-TENFKMLLIL  224 (227)
T ss_dssp             TTEEEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE---TT--EEEEEETTEEEEECTTSCEEEECC-SSCEEEEEEE
T ss_pred             CCeEEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE---CC--EEEEECCCCEEEECCCCcEEEEeC-CCCEEEEEEE
Confidence            46888999999999999999988999999999999986   33  358999999999999999999993 4456666543

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=98.83  E-value=3e-08  Score=80.59  Aligned_cols=73  Identities=14%  Similarity=0.098  Sum_probs=60.1

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+++..+++.||+-.  |||.. ..|+.||++|++++++   +|+.   ..|++||+++||+|..|..++..+.++++.+
T Consensus        39 ~~~~~~~~~~pG~~~--~~H~~-~~E~~~Vl~G~~~~~~---~g~~---~~l~~GD~v~ip~g~~H~~~~~~~~~~~l~v  109 (119)
T 3lwc_A           39 PITIGYGRYAPGQSL--TETMA-VDDVMIVLEGRLSVST---DGET---VTAGPGEIVYMPKGETVTIRSHEEGALTAYV  109 (119)
T ss_dssp             CCEEEEEEECTTCEE--EEECS-SEEEEEEEEEEEEEEE---TTEE---EEECTTCEEEECTTCEEEEEEEEEEEEEEEE
T ss_pred             CEEEEEEEECCCCCc--CccCC-CCEEEEEEeCEEEEEE---CCEE---EEECCCCEEEECCCCEEEEEcCCCCeEEEEE
Confidence            488999999999754  77776 8999999999999998   3433   5799999999999999999775566777665


Q ss_pred             Ec
Q 018395          302 IT  303 (356)
Q Consensus       302 ~~  303 (356)
                      .+
T Consensus       110 ~~  111 (119)
T 3lwc_A          110 TY  111 (119)
T ss_dssp             EE
T ss_pred             EC
Confidence            53

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=98.83  E-value=3.3e-08  Score=80.32  Aligned_cols=77  Identities=14%  Similarity=0.139  Sum_probs=64.5

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      ++.+.++.+.||+...+|||+.  .|+.||++|++++.+-   + +  ...|++||++++|+|.+|...+..+++.++.+
T Consensus        40 ~~~~~~~~~~pg~~~~~H~H~~--~e~~~vl~G~~~~~~~---~-~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~l~v  111 (126)
T 4e2g_A           40 NLMLNWVRIEPNTEMPAHEHPH--EQAGVMLEGTLELTIG---E-E--TRVLRPGMAYTIPGGVRHRARTFEDGCLVLDI  111 (126)
T ss_dssp             SCEEEEEEECTTCEEEEECCSS--EEEEEEEEECEEEEET---T-E--EEEECTTEEEEECTTCCEEEECCTTCEEEEEE
T ss_pred             CeEEEEEEECCCCcCCCccCCC--ceEEEEEEeEEEEEEC---C-E--EEEeCCCCEEEECCCCcEEeEECCCCEEEEEE
Confidence            6889999999999999999984  7999999999999872   2 2  25799999999999999999664447888887


Q ss_pred             EcCCC
Q 018395          302 ITTPN  306 (356)
Q Consensus       302 ~~~~~  306 (356)
                      +...+
T Consensus       112 ~~p~~  116 (126)
T 4e2g_A          112 FSPPR  116 (126)
T ss_dssp             EESCC
T ss_pred             ECCCC
Confidence            75543

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=98.81  E-value=3.9e-09  Score=82.89  Aligned_cols=76  Identities=13%  Similarity=0.043  Sum_probs=63.8

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~  300 (356)
                      .+.+.++.+.||+-...|+|+. ..++.||++|+++++.-  +|.. ....+++||.+++|+|..|.+ |.|+++++|+.
T Consensus        16 ~~rV~r~~i~PG~~~~~H~H~~-~~e~~~v~~G~~~v~~~--d~~~-~~~~l~~G~~~~ip~G~~H~~~N~g~~pl~~Ie   91 (98)
T 3lag_A           16 EVRVTEWRLPPGSATGHHTHGM-DYVVVPMADGEMTIVAP--DGTR-SLAQLKTGRSYARKAGVQHDVRNESTAEIVFLE   91 (98)
T ss_dssp             SEEEEEEEECTTEECCSEECCS-CEEEEESSCBC-CEECT--TSCE-ECCCBCTTCCEEECTTCEEEEBCCSSSCEEEEE
T ss_pred             eEEEEEEEECCCCccCcEECCC-cEEEEEEeccEEEEEeC--CCce-EEEEecCCcEEEEcCCCcEECEECCCCeEEEEE
Confidence            4778999999999999999998 88999999999987653  3332 234789999999999999999 56899999998


Q ss_pred             E
Q 018395          301 I  301 (356)
Q Consensus       301 ~  301 (356)
                      +
T Consensus        92 V   92 (98)
T 3lag_A           92 I   92 (98)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=98.81  E-value=9.3e-09  Score=80.13  Aligned_cols=76  Identities=11%  Similarity=0.002  Sum_probs=63.5

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEe-eCCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI-ADPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~-~~~~~~~~~~  300 (356)
                      .+.+.++.+.||+-..+|.|+. ..|+.||++|++++++-+  |.+  ...|++||.+++|+|.+|... .++++++++.
T Consensus        17 ~~~~~~~~~~Pg~~~~~H~H~~-~~e~~~Vl~G~~~~~~~~--g~~--~~~l~~Gd~~~~p~~~~H~~~N~g~~~~~~l~   91 (97)
T 2fqp_A           17 RVKVTEWRFPPGGETGWHRHSM-DYVVVPMTTGPLLLETPE--GSV--TSQLTRGVSYTRPEGVEHNVINPSDTEFVFVE   91 (97)
T ss_dssp             SEEEEEEEECTTCBCCSEECCS-CEEEEESSCEEEEEEETT--EEE--EEEECTTCCEEECTTCEEEEECCSSSCEEEEE
T ss_pred             eEEEEEEEECCCCCCCCEECCC-CcEEEEEeecEEEEEeCC--CCE--EEEEcCCCEEEeCCCCcccCEeCCCCcEEEEE
Confidence            5778999999999999999987 778999999999988643  212  357999999999999999994 4778888887


Q ss_pred             EE
Q 018395          301 II  302 (356)
Q Consensus       301 ~~  302 (356)
                      +-
T Consensus        92 v~   93 (97)
T 2fqp_A           92 IE   93 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=98.79  E-value=1.8e-08  Score=89.53  Aligned_cols=93  Identities=10%  Similarity=-0.044  Sum_probs=74.6

Q ss_pred             CCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCC
Q 018395           16 GNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG   95 (356)
Q Consensus        16 ~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G   95 (356)
                      .+.+..+..-+..  ......+.++.+.+.||...+.|.|..+|++||++|++.+.+-  ++  ....+++||++++|+|
T Consensus       113 ~~~a~~elvGP~g--~~~s~~l~lG~v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~--~g--~~~~l~pGd~v~ipsg  186 (217)
T 4b29_A          113 NRFGWFELAGPSG--HFLTQSLRVTVGYWGPGLDYGWHEHLPEELYSVVSGRALFHLR--NA--PDLMLEPGQTRFHPAN  186 (217)
T ss_dssp             HHEEEEEEEETTS--SEECSSCEEEEEEECSSCEEEEEECSSEEEEEEEEECEEEEET--TS--CCEEECTTCEEEECTT
T ss_pred             hCceEEEEECCCC--CCCCCeEEEEEEEECCCCcCCCCCCCCceEEEEEeCCEEEEEC--CC--CEEecCCCCEEEcCCC
Confidence            3455666554432  2455789999999999999999999999999999999999872  12  3379999999999999


Q ss_pred             cEEEEEecCCCcEEEEEEee
Q 018395           96 VVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        96 ~~H~~~N~g~e~l~~l~i~~  115 (356)
                      .+|++. ++++++..+.+..
T Consensus       187 v~Ha~r-t~dePllalwvW~  205 (217)
T 4b29_A          187 APHAMT-TLTDPILTLVLWR  205 (217)
T ss_dssp             CCEEEE-CCSSCEEEEEEEE
T ss_pred             CceeEE-ECCccEEEEEEEe
Confidence            999998 5789987666654

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=98.78  E-value=3.8e-08  Score=84.35  Aligned_cols=97  Identities=15%  Similarity=0.081  Sum_probs=74.3

Q ss_pred             cCCCcEEEEeCCCCCCCccccCceeEEEEecCCCee-cccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395          201 IKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMC-SPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF  279 (356)
Q Consensus       201 ~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~-~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~  279 (356)
                      ....|..+..-.   +....-.+.+..+.|.||+.. .+|||.. ..|+.||++|++++.+-+    +  ...|++||++
T Consensus        24 ~~~~G~~~~~l~---~~~~~~~~~~~~~~l~pG~~~~~~H~H~~-~eE~~~Vl~G~~~~~~~~----~--~~~l~~GD~i   93 (163)
T 3i7d_A           24 AAMDGRSSLRLG---DAGGLSQFGVNLVRLEPGAKSSLRHYHME-QDEFVMVTEGALVLVDDQ----G--EHPMVPGDCA   93 (163)
T ss_dssp             GGGTTEEEEEHH---HHTTCCSEEEEEEEECTTCBSSSSEEESS-CCEEEEEEESCEEEEETT----E--EEEECTTCEE
T ss_pred             ccCCCeEEEEcc---cCCCCCeEEEEEEEECCCCcCCCCccCCC-CcEEEEEEECEEEEEECC----E--EEEeCCCCEE
Confidence            344666655432   222223578999999999965 7999987 789999999999988633    2  3579999999


Q ss_pred             EEcCC--cEEEEee-CCCCeEEEEEEcCCCC
Q 018395          280 IVPRF--YVVSKIA-DPDGLAWFSIITTPNP  307 (356)
Q Consensus       280 vvP~g--~~h~~~~-~~~~~~~~~~~~~~~p  307 (356)
                      +||+|  .+|...| ++++++++.+.+....
T Consensus        94 ~ip~~~~~~H~~~n~~~~~~~~l~v~~p~~~  124 (163)
T 3i7d_A           94 AFPAGDPNGHQFVNRTDAPATFLVVGTRTPT  124 (163)
T ss_dssp             EECTTCCCCBEEECCSSSCEEEEEEEECCSC
T ss_pred             EECCCCCcceEEEECCCCCEEEEEEECCCCC
Confidence            99999  9999854 7788999998765543

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=98.78  E-value=9.6e-09  Score=81.28  Aligned_cols=69  Identities=12%  Similarity=0.128  Sum_probs=53.9

Q ss_pred             EEEEEEecCCCcccCeeeCC-CEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           38 GAAKLALEKNGFALPHYCDS-ARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        38 ~~~~~~l~Pg~~~~pH~h~a-~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      ....+.+.||.. .+|+|.. .|++||++|++.+.+   ++. ..+.|++||++++|+|..|++.|.  ++++++.+
T Consensus        29 ~~~~~~~~~g~~-~~H~H~~~~E~~~Vl~G~~~~~~---~~~-~~~~l~~Gd~~~ip~~~~H~~~~~--~~~~~l~i   98 (107)
T 2i45_A           29 FQFHLVKLLGDY-GWHTHGYSDKVLFAVEGDMAVDF---ADG-GSMTIREGEMAVVPKSVSHRPRSE--NGCSLVLI   98 (107)
T ss_dssp             EEEEEEEEEEEC-CCBCC--CCEEEEESSSCEEEEE---TTS-CEEEECTTEEEEECTTCCEEEEEE--EEEEEEEE
T ss_pred             CEEEEEECCCCC-cceeCCCCCEEEEEEeCEEEEEE---CCC-cEEEECCCCEEEECCCCcEeeEeC--CCeEEEEE
Confidence            345677788874 5999954 999999999999986   221 248999999999999999999995  35677654

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=98.77  E-value=5.2e-08  Score=79.32  Aligned_cols=74  Identities=14%  Similarity=0.258  Sum_probs=62.9

Q ss_pred             cCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEE
Q 018395          221 VGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWF  299 (356)
Q Consensus       221 l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~  299 (356)
                      ..+++..+.+.||....+||| + ..|+.||++|++++.+   ++ +  ...|++||+++||+|.+|...+ ++++++++
T Consensus        32 ~~~~~~~~~~~pg~~~~~H~H-~-~~Ei~~v~~G~~~~~i---~~-~--~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~  103 (128)
T 4i4a_A           32 TPFGGAWCIVRPETKSFRHSH-N-EYELFIVIQGNAIIRI---ND-E--DFPVTKGDLIIIPLDSEHHVINNNQEDFHFY  103 (128)
T ss_dssp             CSSEEEEEEECTTEECCCBCC-S-SEEEEEEEESEEEEEE---TT-E--EEEEETTCEEEECTTCCEEEEECSSSCEEEE
T ss_pred             CCcEEEEEEECCCCccCCEec-C-CeEEEEEEeCEEEEEE---CC-E--EEEECCCcEEEECCCCcEEeEeCCCCCEEEE
Confidence            357889999999999999999 4 7899999999999887   22 2  3579999999999999999955 57788887


Q ss_pred             EEE
Q 018395          300 SII  302 (356)
Q Consensus       300 ~~~  302 (356)
                      .+.
T Consensus       104 ~i~  106 (128)
T 4i4a_A          104 TIW  106 (128)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=98.77  E-value=2.6e-08  Score=84.92  Aligned_cols=78  Identities=17%  Similarity=0.309  Sum_probs=66.0

Q ss_pred             cCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEE
Q 018395          221 VGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWF  299 (356)
Q Consensus       221 l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~  299 (356)
                      .++.+..+.+.||+...+|||+.  .|+.||++|++++.+   ++ +  ...|++||+++||+|.+|...+ ++++++++
T Consensus        42 ~~~~~~~~~l~pG~~~~~H~H~~--~E~~~Vl~G~~~v~v---~g-~--~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l  113 (156)
T 3kgz_A           42 LACEWRYFEVDEGGYSTLERHAH--VHAVMIHRGHGQCLV---GE-T--ISDVAQGDLVFIPPMTWHQFRANRGDCLGFL  113 (156)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSS--CEEEEEEEEEEEEEE---TT-E--EEEEETTCEEEECTTCCEEEECCSSSCEEEE
T ss_pred             CcEEEEEEEECCCCccCceeCCC--cEEEEEEeCEEEEEE---CC-E--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEE
Confidence            35788899999999999999975  599999999999985   22 2  3579999999999999999954 77899999


Q ss_pred             EEEcCCC
Q 018395          300 SIITTPN  306 (356)
Q Consensus       300 ~~~~~~~  306 (356)
                      ++.....
T Consensus       114 ~i~~~~~  120 (156)
T 3kgz_A          114 CVVNAAR  120 (156)
T ss_dssp             EEEESSC
T ss_pred             EEEeCCC
Confidence            9876554

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=98.76  E-value=3e-08  Score=82.34  Aligned_cols=81  Identities=15%  Similarity=0.172  Sum_probs=65.8

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~  300 (356)
                      ++++..+.+.||+...+|||+.  .|++||++|++++.+... + +  ...|++||++++|+|.+|...+ +++++.++.
T Consensus        38 ~~~~~~~~~~pg~~~~~H~H~~--~e~~~vl~G~~~~~~~~~-~-~--~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~  111 (145)
T 3ht1_A           38 RFVLTEFEVSPNGSTPPHFHEW--EHEIYVLEGSMGLVLPDQ-G-R--TEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLV  111 (145)
T ss_dssp             SEEEEEEEEEEEEECCCEECSS--CEEEEEEEECEEEEEGGG-T-E--EEEECTTCEEEECTTCCBEEECCTTCCEEEEE
T ss_pred             cEEEEEEEECCCCcCCCccCCC--ceEEEEEEeEEEEEEeEC-C-E--EEEECCCCEEEECCCCeEEeEcCCCCCEEEEE
Confidence            5788899999999999999985  578899999999884222 2 2  3579999999999999999955 677899998


Q ss_pred             EEcCCCCc
Q 018395          301 IITTPNPI  308 (356)
Q Consensus       301 ~~~~~~p~  308 (356)
                      +.....+.
T Consensus       112 i~~~~~~~  119 (145)
T 3ht1_A          112 VAPCERPP  119 (145)
T ss_dssp             EEESCCCC
T ss_pred             EECCCCCC
Confidence            87665543

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=98.76  E-value=6.2e-08  Score=77.39  Aligned_cols=76  Identities=21%  Similarity=0.218  Sum_probs=62.9

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      ++.+..+.+.||+...+|||+  ..|+.||++|++.+.+   ++ +  ...|++||++++|+|.+|...+.. +++++.+
T Consensus        33 ~~~~~~~~~~pg~~~~~H~H~--~~e~~~vl~G~~~~~~---~~-~--~~~l~~Gd~~~ip~~~~H~~~~~~-~~~~l~v  103 (116)
T 2pfw_A           33 ELMAVKIWFDKGAEGYVHAHR--HSQVSYVVEGEFHVNV---DG-V--IKVLTAGDSFFVPPHVDHGAVCPT-GGILIDT  103 (116)
T ss_dssp             TEEEEEEEECTTEEEEEECCS--SEEEEEEEEECEEEEE---TT-E--EEEECTTCEEEECTTCCEEEEESS-CEEEEEE
T ss_pred             ceEEEEEEECCCCcCCcEECC--cceEEEEEeeEEEEEE---CC-E--EEEeCCCCEEEECcCCceeeEeCC-CcEEEEE
Confidence            377899999999999999997  5799999999999887   33 2  357999999999999999986644 6778877


Q ss_pred             EcCCC
Q 018395          302 ITTPN  306 (356)
Q Consensus       302 ~~~~~  306 (356)
                      +....
T Consensus       104 ~~p~~  108 (116)
T 2pfw_A          104 FSPAR  108 (116)
T ss_dssp             EESCC
T ss_pred             ECCch
Confidence            75543

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.76  E-value=5.7e-08  Score=80.20  Aligned_cols=74  Identities=16%  Similarity=0.176  Sum_probs=62.3

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~  300 (356)
                      .+.+..+.+.||+...+|||+. ..|+.||++|++.+.+-   + +  ...|++||++++|+|.+|...+ +++++.++.
T Consensus        56 ~~~~~~~~~~pg~~~~~H~H~~-~~E~~~Vl~G~~~~~i~---~-~--~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~  128 (133)
T 1o4t_A           56 ARLFARMKLPPGSSVGLHKHEG-EFEIYYILLGEGVFHDN---G-K--DVPIKAGDVCFTDSGESHSIENTGNTDLEFLA  128 (133)
T ss_dssp             EEEEEEEEECTTCEEEEEECCS-EEEEEEEEESEEEEEET---T-E--EEEEETTEEEEECTTCEEEEECCSSSCEEEEE
T ss_pred             eEEEEEEEECCCCccCceECCC-ccEEEEEEeCEEEEEEC---C-E--EEEeCCCcEEEECCCCcEEeEECCCCCEEEEE
Confidence            3567889999999999999986 78999999999998763   2 2  3579999999999999999854 677888887


Q ss_pred             EE
Q 018395          301 II  302 (356)
Q Consensus       301 ~~  302 (356)
                      +.
T Consensus       129 v~  130 (133)
T 1o4t_A          129 VI  130 (133)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=98.76  E-value=7.7e-07  Score=80.13  Aligned_cols=168  Identities=13%  Similarity=0.038  Sum_probs=113.0

Q ss_pred             ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEee
Q 018395           36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      +..+.+++++||+..++|.|...|..|||+|+..-     ++    ..+.+||.++.|+|..|....  ++.+.++... 
T Consensus        42 g~~~~lvr~~pG~~~p~H~H~g~Ee~~VL~G~f~d-----~~----~~~~~Gd~~~~P~g~~H~p~a--~~gc~~~vk~-  109 (223)
T 3o14_A           42 ARATSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQD-----EH----GDYPAGTYVRNPPTTSHVPGS--AEGCTIFVKL-  109 (223)
T ss_dssp             CEEEEEEEECTTEECCCEECTTCEEEEEEEEEEEE-----TT----EEEETTEEEEECTTCEECCEE--SSCEEEEEEE-
T ss_pred             ccEEEEEEECCCCCcccccCCCCEEEEEEEeEEEE-----CC----eEECCCeEEEeCCCCccccEe--CCCCEEEEEe-
Confidence            44678899999999999999999999999999752     11    589999999999999998876  3445444322 


Q ss_pred             CCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceeeccCC
Q 018395          116 TSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEA  195 (356)
Q Consensus       116 ~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~l~~~  195 (356)
                       ..+. +++                                      ++ .+  ..+. ..  +.               
T Consensus       110 -~~~~-~~d--------------------------------------~~-~v--~~~~-~~--W~---------------  128 (223)
T 3o14_A          110 -WQFD-PAD--------------------------------------RT-QF--SKNM-EA--EL---------------  128 (223)
T ss_dssp             -SCSC-TTC--------------------------------------CB-CE--EEET-TT--TC---------------
T ss_pred             -cCCC-CCc--------------------------------------cc-cc--ccch-hc--cc---------------
Confidence             1111 100                                      00 01  1010 00  00               


Q ss_pred             CCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecC
Q 018395          196 PLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKA  275 (356)
Q Consensus       196 ~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~  275 (356)
                       +.  ...|-.+..+....       +-.++.+++.||....+|.| . ..|+ +|++|+..    +..      .++.+
T Consensus       129 -~~--~~~Gv~~~~L~~~~-------~E~v~l~r~~~G~~~~~~~h-g-G~Ei-lVL~G~~~----d~~------~~~~~  185 (223)
T 3o14_A          129 -GA--PVEGISTSLLHEDE-------RETVTHRKLEPGANLTSEAA-G-GIEV-LVLDGDVT----VND------EVLGR  185 (223)
T ss_dssp             -CC--CBTTEEEEEEEECS-------SCEEEEEEECTTCEEEECCS-S-CEEE-EEEEEEEE----ETT------EEECT
T ss_pred             -cc--CCCCeEEEEEecCC-------CcEEEEEEECCCCccCCCCC-C-cEEE-EEEEeEEE----ECC------ceECC
Confidence             00  00122223332221       24578899999999999999 7 8897 99999964    322      36899


Q ss_pred             CcEEEEcCCcEEEEeeCCCCeEEE
Q 018395          276 GNLFIVPRFYVVSKIADPDGLAWF  299 (356)
Q Consensus       276 Gdv~vvP~g~~h~~~~~~~~~~~~  299 (356)
                      |+-+-.|.|..|...++.+++.++
T Consensus       186 GsWlR~P~gs~h~~~ag~~g~~i~  209 (223)
T 3o14_A          186 NAWLRLPEGEALSATAGARGAKIW  209 (223)
T ss_dssp             TEEEEECTTCCEEEEEEEEEEEEE
T ss_pred             CeEEEeCCCCccCcEECCCCeEEE
Confidence            999999999999998877776544

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=98.76  E-value=4.7e-08  Score=78.43  Aligned_cols=73  Identities=16%  Similarity=0.191  Sum_probs=61.5

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEE-EecCCcEEEEcCCcEEEEee-CCCCeEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLET-TVKAGNLFIVPRFYVVSKIA-DPDGLAWF  299 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~-~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~  299 (356)
                      ++.+..+.+.||+...+|||+  ..|+.||++|++++.+-+   +.   . .|++||++++|+|.+|...+ ++++++++
T Consensus        26 ~~~~~~~~~~pg~~~~~H~H~--~~e~~~Vl~G~~~~~i~~---~~---~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l   97 (117)
T 2b8m_A           26 HVQINHIVLPRGEQMPKHYSN--SYVHLIIIKGEMTLTLED---QE---PHNYKEGNIVYVPFNVKMLIQNINSDILEFF   97 (117)
T ss_dssp             SCEEEEEEEETTCBCCCEECS--SCEEEEEEESEEEEEETT---SC---CEEEETTCEEEECTTCEEEEECCSSSEEEEE
T ss_pred             ceEEEEEEECCCCcCCCEeCC--CcEEEEEEeCEEEEEECC---EE---EEEeCCCCEEEECCCCcEEeEcCCCCCEEEE
Confidence            567888999999999999995  679999999999998732   23   3 69999999999999999855 56778888


Q ss_pred             EEE
Q 018395          300 SII  302 (356)
Q Consensus       300 ~~~  302 (356)
                      .+.
T Consensus        98 ~i~  100 (117)
T 2b8m_A           98 VVK  100 (117)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=98.75  E-value=2.6e-07  Score=81.11  Aligned_cols=157  Identities=9%  Similarity=-0.005  Sum_probs=95.5

Q ss_pred             cCcHHHHHhhccCCHHHHHHhhcccC-C---ceEEEcCCCCc-----CCCCCcc--cCCCceeeccCCCCC--cccCCCc
Q 018395          139 GFSTEFVSRAWDLDENTVKTLVGKQT-G---KGIVKLDANAK-----LPEPKKE--HRDGMAFNCEEAPLD--VDIKNGG  205 (356)
Q Consensus       139 ~~~~~vl~~af~~~~~~~~~l~~~q~-~---~~iv~~~~~~~-----~~~p~~~--~~~~~~~~l~~~~~~--~~~~~gG  205 (356)
                      +++.+-||+..|++...+.++..... .   ..+.++.+...     +......  ........-......  .....+|
T Consensus        23 g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  102 (198)
T 2bnm_A           23 KMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILKGVRDNVDY  102 (198)
T ss_dssp             TCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGGSCCCCCCCBTTBCCCCGGGCCEECCSTTCSTT
T ss_pred             CCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHEEccCCCCcccCceEEeecccccccccccCCCc
Confidence            68889999999999999998876543 2   11222111100     0011000  011111111111110  1123344


Q ss_pred             EEEEeCCCCCCCccccCceeEEEEecCCCeec---ccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEc
Q 018395          206 RVVLLNTKNLPLVGEVGCGADLVRLDGKAMCS---PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVP  282 (356)
Q Consensus       206 ~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~---PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP  282 (356)
                      .....-.   |....-.+.+..+.+.||+...   +|||+  ..|+.||++|++.+.+-+..+.+  ...|++||.++||
T Consensus       103 ~~~~~l~---~~~~~~~~~~~~~~~~pg~~~~~~~~h~h~--~~E~~~Vl~G~~~~~~~~~~~~~--~~~l~~GD~~~~~  175 (198)
T 2bnm_A          103 YVYNCLV---RTKRAPSLVPLVVDVLTDNPDDAKFNSGHA--GNEFLFVLEGEIHMKWGDKENPK--EALLPTGASMFVE  175 (198)
T ss_dssp             EEEEECC---CCTTSTTCEEEEEEECCCCGGGCCCCCCCS--SCEEEEEEESCEEEEESCTTSCE--EEEECTTCEEEEC
T ss_pred             eEEEeec---cCCCCCcceEEEEEEcCCCCCcccccccCC--CeEEEEEEeeeEEEEECCcCCcc--cEEECCCCEEEeC
Confidence            4444332   2233346889999999999887   58886  57999999999999874311113  3589999999999


Q ss_pred             CCcEEEE-ee-CCCCeEEEEEE
Q 018395          283 RFYVVSK-IA-DPDGLAWFSII  302 (356)
Q Consensus       283 ~g~~h~~-~~-~~~~~~~~~~~  302 (356)
                      ++.+|.. +. ++++++++.+.
T Consensus       176 ~~~~H~~~n~~~~~~~~~l~v~  197 (198)
T 2bnm_A          176 EHVPHAFTAAKGTGSAKLIAVN  197 (198)
T ss_dssp             TTCCEEEEESTTSCCEEEEEEE
T ss_pred             CCCceEEEecCCCCCeEEEEEe
Confidence            9999998 44 56788888765

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=98.73  E-value=3.8e-08  Score=84.72  Aligned_cols=77  Identities=12%  Similarity=0.150  Sum_probs=65.1

Q ss_pred             cCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEE
Q 018395          221 VGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWF  299 (356)
Q Consensus       221 l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~  299 (356)
                      .++.+..+.+.||+...+|||+.  .|+.||++|++++.+-   + +  ...|++||+++||+|.+|...+ +++++.++
T Consensus        51 ~~~~~~~~~l~pG~~~~~H~H~~--~E~~~Vl~G~~~~~v~---g-~--~~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l  122 (166)
T 3jzv_A           51 LTGELRYFEVGPGGHSTLERHQH--AHGVMILKGRGHAMVG---R-A--VSAVAPYDLVTIPGWSWHQFRAPADEALGFL  122 (166)
T ss_dssp             CSEEEEEEEEEEEEECCCBBCSS--CEEEEEEEECEEEEET---T-E--EEEECTTCEEEECTTCCEEEECCTTSCEEEE
T ss_pred             CeEEEEEEEECCCCccCceeCCC--cEEEEEEeCEEEEEEC---C-E--EEEeCCCCEEEECCCCcEEeEeCCCCCEEEE
Confidence            35778899999999999999975  5999999999998762   2 2  3579999999999999999954 67889999


Q ss_pred             EEEcCC
Q 018395          300 SIITTP  305 (356)
Q Consensus       300 ~~~~~~  305 (356)
                      ++....
T Consensus       123 ~i~~~~  128 (166)
T 3jzv_A          123 CMVNAE  128 (166)
T ss_dssp             EEEESS
T ss_pred             EEEccC
Confidence            987554

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=98.73  E-value=4.6e-08  Score=80.42  Aligned_cols=76  Identities=13%  Similarity=0.031  Sum_probs=55.6

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEEEEc
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFSIIT  303 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~~~~  303 (356)
                      +.++.+.||+...+|||+. ..|+.||++|++++.+-+  + +  ...|++||++++|+|.+|...+ ++ .++++.++.
T Consensus        45 ~~~~~~~~g~~~~~H~H~~-~~E~~~vl~G~~~~~~~~--~-~--~~~l~~Gd~~~ip~g~~H~~~~~~~-~~~~l~~~~  117 (134)
T 2o8q_A           45 VIRAIPGKEAKPTWHTHTV-GFQLFYVLRGWVEFEYED--I-G--AVMLEAGGSAFQPPGVRHRELRHSD-DLEVLEIVS  117 (134)
T ss_dssp             EEEECC-----CCCEEECC-SCEEEEEEESEEEEEETT--T-E--EEEEETTCEEECCTTCCEEEEEECT-TCEEEEEES
T ss_pred             EEEEecCCCCCCCCEECCC-CcEEEEEEeCEEEEEECC--c-E--EEEecCCCEEEECCCCcEEeEeCCC-CeEEEEEEC
Confidence            4444455888889999987 799999999999988743  1 3  3579999999999999999966 55 578887775


Q ss_pred             CCCC
Q 018395          304 TPNP  307 (356)
Q Consensus       304 ~~~p  307 (356)
                      ....
T Consensus       118 p~~~  121 (134)
T 2o8q_A          118 PAGF  121 (134)
T ss_dssp             STTC
T ss_pred             CCch
Confidence            5543

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=98.73  E-value=8.6e-08  Score=80.64  Aligned_cols=96  Identities=20%  Similarity=0.105  Sum_probs=74.6

Q ss_pred             cCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEE
Q 018395          221 VGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWF  299 (356)
Q Consensus       221 l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~  299 (356)
                      .++.+.++.+.||+...+|||+.  .|+.||++|++++.+-+   +.  ...|++||++++|+|.+|...+ +++++.++
T Consensus        46 ~~~~~~~~~~~pg~~~~~H~H~~--~E~~~Vl~G~~~~~~~~---~~--~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l  118 (147)
T 2f4p_A           46 FNTQVYDVVFEPGARTHWHSHPG--GQILIVTRGKGFYQERG---KP--ARILKKGDVVEIPPNVVHWHGAAPDEELVHI  118 (147)
T ss_dssp             SSCEEEEEEECTTCEECSEECTT--CEEEEEEEEEEEEEETT---SC--CEEEETTCEEEECTTCCEEEEEBTTBCEEEE
T ss_pred             CcEEEEEEEECCCCccCceECCC--ceEEEEEeCEEEEEECC---EE--EEEECCCCEEEECCCCcEEeEeCCCCCEEEE
Confidence            36889999999999999999975  69999999999988633   22  1469999999999999999855 67789998


Q ss_pred             EEEcCCCCceeccccccccccCCCHHHHHH
Q 018395          300 SIITTPNPIFTHLAGSIGTWKSLSPSVLEA  329 (356)
Q Consensus       300 ~~~~~~~p~~~~laG~~s~l~~~p~~vl~~  329 (356)
                      ++......      ....|+..+.++...+
T Consensus       119 ~v~~~~~~------~~~~wl~~v~~e~~~~  142 (147)
T 2f4p_A          119 GISTQVHL------GPAEWLGSVTEEEYRK  142 (147)
T ss_dssp             EEECCGGG------CCCEECCCCCHHHHHH
T ss_pred             EEEccCCC------CCceecccCCHHHhhh
Confidence            88754321      1146777777766644

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=98.73  E-value=4.9e-08  Score=79.39  Aligned_cols=80  Identities=15%  Similarity=0.133  Sum_probs=62.5

Q ss_pred             ccCceeEEEEecCCCeec-ccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeE
Q 018395          220 EVGCGADLVRLDGKAMCS-PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLA  297 (356)
Q Consensus       220 ~l~~s~~~v~l~~g~~~~-PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~  297 (356)
                      .-++.+..+.+.||+... +|||+. ..++.||++|++.+.+-   + +  ...|++||++++|+|.+|...+ +++++.
T Consensus        23 ~~~~~~~~~~~~pg~~~~~~H~H~~-~e~~~~vl~G~~~~~i~---~-~--~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~   95 (125)
T 3cew_A           23 LTGAEVSINHLPAGAGVPFVHSHKQ-NEEIYGILSGKGFITID---G-E--KIELQAGDWLRIAPDGKRQISAASDSPIG   95 (125)
T ss_dssp             CSSCEEEEEEECTTCBCSSEEEESS-EEEEEEEEEEEEEEEET---T-E--EEEEETTEEEEECTTCCEEEEEBTTBCEE
T ss_pred             CCCcEEEEEEECCCCCCCCCccCCC-ceEEEEEEeCEEEEEEC---C-E--EEEeCCCCEEEECCCCcEEEEcCCCCCEE
Confidence            346788899999999887 899975 44455599999998863   2 2  3579999999999999999855 567888


Q ss_pred             EEEEEcCCC
Q 018395          298 WFSIITTPN  306 (356)
Q Consensus       298 ~~~~~~~~~  306 (356)
                      ++.+.....
T Consensus        96 ~~~i~~~~~  104 (125)
T 3cew_A           96 FLCIQVKAG  104 (125)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEcCCc
Confidence            887754443

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.72  E-value=1.2e-07  Score=83.12  Aligned_cols=79  Identities=23%  Similarity=0.268  Sum_probs=63.7

Q ss_pred             EEEEEEecCCC----------cccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCc
Q 018395           38 GAAKLALEKNG----------FALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTE  107 (356)
Q Consensus        38 ~~~~~~l~Pg~----------~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~  107 (356)
                      ....+.+.|+.          ...+|+|..+|+.||++|+|.+.+-+.+++.....+++||+++||+|..|+..+..+..
T Consensus        75 ~~D~v~~~p~~~p~~~~k~~~~~~~H~H~~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~~~  154 (191)
T 1vr3_A           75 WMDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNY  154 (191)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTCC
T ss_pred             ceeEEEECCCcCcchhhhhccCCcceECCcceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCCCCC
Confidence            55677888876          24789997799999999999999865433333469999999999999999999877777


Q ss_pred             EEEEEEeeC
Q 018395          108 LVVLFLGDT  116 (356)
Q Consensus       108 l~~l~i~~~  116 (356)
                      +..+.++..
T Consensus       155 ~~airlF~~  163 (191)
T 1vr3_A          155 VKAMRLFVG  163 (191)
T ss_dssp             EEEEEEESS
T ss_pred             EEEEEEECC
Confidence            888877764

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.67  E-value=6.6e-08  Score=75.14  Aligned_cols=68  Identities=19%  Similarity=0.231  Sum_probs=52.5

Q ss_pred             eEEEEEEecCCCcccCeeeCC-CEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           37 IGAAKLALEKNGFALPHYCDS-ARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        37 ~~~~~~~l~Pg~~~~pH~h~a-~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      ..+....+.  +...+|+|.. .|++||++|++.+.+   ++  ..+.+++||++++|+|..|.+.|.+  +..++.+
T Consensus        31 ~~~~~~~~~--~~~~~H~H~~~~e~~~v~~G~~~~~~---~~--~~~~l~~Gd~~~ip~~~~H~~~~~~--~~~~l~i   99 (102)
T 3d82_A           31 YQFKLVKVE--GEFVWHEHADTDEVFIVMEGTLQIAF---RD--QNITLQAGEMYVIPKGVEHKPMAKE--ECKIMII   99 (102)
T ss_dssp             EEEEEEEEE--EECCCBCCTTCCEEEEEEESEEEEEC---SS--CEEEEETTEEEEECTTCCBEEEEEE--EEEEEEE
T ss_pred             CEEEEEEEC--CCCCceeCCCCcEEEEEEeCEEEEEE---CC--EEEEEcCCCEEEECCCCeEeeEcCC--CCEEEEE
Confidence            344444443  3578999954 999999999999875   22  3489999999999999999999974  4556554

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=98.67  E-value=2e-08  Score=79.30  Aligned_cols=67  Identities=22%  Similarity=0.242  Sum_probs=52.2

Q ss_pred             eEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEE
Q 018395           37 IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELV  109 (356)
Q Consensus        37 ~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~  109 (356)
                      +.+....++||... .| |...|++||++|++++.+ + ++  ..+.|++||++++|+|.+|.+.|.++.+..
T Consensus        31 ~~~~~~~~~pg~~~-~h-H~~~E~~~Vl~G~~~~~i-~-~g--~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~   97 (101)
T 1o5u_A           31 EKWPIWEKEVSEFD-WY-YDTNETCYILEGKVEVTT-E-DG--KKYVIEKGDLVTFPKGLRCRWKVLEPVRKH   97 (101)
T ss_dssp             GGSCEEEECSEEEE-EE-CSSCEEEEEEEEEEEEEE-T-TC--CEEEEETTCEEEECTTCEEEEEEEEEEEEE
T ss_pred             eEEEEEEeCCCccc-cc-CCceEEEEEEeCEEEEEE-C-CC--CEEEECCCCEEEECCCCcEEEEeCCCeeEE
Confidence            34457788898742 33 589999999999999986 1 13  348999999999999999999997665433

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=98.67  E-value=1.6e-07  Score=75.38  Aligned_cols=63  Identities=10%  Similarity=-0.016  Sum_probs=55.2

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD  292 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~  292 (356)
                      ++.+.++.+.||+-..+|||+.  .|+.||++|++++.+-   ++   ...|++||.+++|+|.+|...+.
T Consensus        35 ~~~v~~~~l~~G~~~~~H~H~~--~e~~~Vl~G~~~~~i~---~~---~~~l~~Gd~i~ip~~~~H~~~~~   97 (114)
T 3fjs_A           35 RLEVMRMVLPAGKQVGSHSVAG--PSTIQCLEGEVEIGVD---GA---QRRLHQGDLLYLGAGAAHDVNAI   97 (114)
T ss_dssp             TEEEEEEEECTTCEEEEECCSS--CEEEEEEESCEEEEET---TE---EEEECTTEEEEECTTCCEEEEES
T ss_pred             CEEEEEEEECCCCccCceeCCC--cEEEEEEECEEEEEEC---CE---EEEECCCCEEEECCCCcEEEEeC
Confidence            5789999999999999999985  5999999999999863   22   35799999999999999999664

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=98.65  E-value=2.5e-07  Score=73.66  Aligned_cols=72  Identities=17%  Similarity=0.152  Sum_probs=59.5

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      ++.+..+.+.||+...+|||+  ..|+.||++|++.+.+   ++ +  ...|++||++++|+|.+|...+.. +++++.+
T Consensus        39 ~~~~~~~~~~~g~~~~~H~H~--~~e~~~vl~G~~~~~~---~~-~--~~~l~~Gd~~~ip~~~~H~~~~~~-~~~~~~v  109 (115)
T 1yhf_A           39 DLGITVFSLDKGQEIGRHSSP--GDAMVTILSGLAEITI---DQ-E--TYRVAEGQTIVMPAGIPHALYAVE-AFQMLLV  109 (115)
T ss_dssp             TEEEEEEEECTTCEEEEECCS--SEEEEEEEESEEEEEE---TT-E--EEEEETTCEEEECTTSCEEEEESS-CEEEEEE
T ss_pred             ceEEEEEEECCCCccCCEECC--CcEEEEEEeCEEEEEE---CC-E--EEEECCCCEEEECCCCCEEEEECC-CceEEEE
Confidence            577889999999999999997  4799999999999876   22 2  257999999999999999986643 5666665


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       110 ~  110 (115)
T 1yhf_A          110 V  110 (115)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=98.65  E-value=7.2e-08  Score=78.72  Aligned_cols=74  Identities=9%  Similarity=0.060  Sum_probs=62.7

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~  300 (356)
                      ++.+..+.+.||+...+|||+  ..|+.||++|++++.+-   ++.   ..|++||++++|+|.+|...+ +++++.++.
T Consensus        47 ~~~~~~~~~~pg~~~~~H~H~--~~e~~~Vl~G~~~~~i~---~~~---~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l~  118 (126)
T 1vj2_A           47 NFVMRLFTVEPGGLIDRHSHP--WEHEIFVLKGKLTVLKE---QGE---ETVEEGFYIFVEPNEIHGFRNDTDSEVEFLC  118 (126)
T ss_dssp             SEEEEEEEEEEEEEEEEECCS--SCEEEEEEESEEEEECS---SCE---EEEETTEEEEECTTCCEEEECCSSSCEEEEE
T ss_pred             CEEEEEEEECCCCcCCceeCC--CcEEEEEEEeEEEEEEC---CEE---EEECCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            578999999999999999997  57999999999988763   222   579999999999999999855 677888888


Q ss_pred             EEc
Q 018395          301 IIT  303 (356)
Q Consensus       301 ~~~  303 (356)
                      +..
T Consensus       119 v~~  121 (126)
T 1vj2_A          119 LIP  121 (126)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            764

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=98.64  E-value=3.9e-07  Score=77.23  Aligned_cols=100  Identities=6%  Similarity=0.081  Sum_probs=73.9

Q ss_pred             ceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEe--ceEEEEEEccCC
Q 018395          188 MAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVR--GSGRAQIVGPDG  265 (356)
Q Consensus       188 ~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~--G~~~~~iv~~~g  265 (356)
                      ...++.+.++.  ...+|+.+.+-..    -....+++..+.+..  -..+|||.. ..|+.||++  |++++++   +|
T Consensus        18 ~iv~~~ei~~~--~~~~G~srR~l~~----~~~fp~sv~~v~~g~--~~~~H~H~~-~~E~~yVLe~~G~g~v~i---dg   85 (157)
T 4h7l_A           18 QMISLSEIEAV--ACPCGWAQRAFGH----DAGTSVSVHYTQITK--AARTHYHRE-HQEIYVVLDHAAHATIEL---NG   85 (157)
T ss_dssp             EEEETTTSCCE--EETTEEEEEESCG----GGCCSCEEEEEEECS--CCCCBBCSS-CEEEEEEEEECTTCEEEE---TT
T ss_pred             eEEEhhhCCCc--cCCCCeeeEEeEc----CCCCcEEEEEEeCCC--CccceECCC-CcEEEEEEecCcEEEEEE---CC
Confidence            46677766664  4668887765432    222335566666654  458999998 899999999  9999987   33


Q ss_pred             ceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCC
Q 018395          266 KRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTP  305 (356)
Q Consensus       266 ~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~  305 (356)
                      +.   ..|++||+++||+|..|.+. +  +++++++.+..
T Consensus        86 e~---~~l~~GD~v~IPpg~~H~i~-g--~l~~L~I~~Pp  119 (157)
T 4h7l_A           86 QS---YPLTKLLAISIPPLVRHRIV-G--EATIINIVSPP  119 (157)
T ss_dssp             EE---EECCTTEEEEECTTCCEEEE-S--CEEEEEEEESS
T ss_pred             EE---EEeCCCCEEEECCCCeEeeE-C--CEEEEEEECCC
Confidence            33   57999999999999999986 2  79999987543

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.63  E-value=2e-07  Score=89.41  Aligned_cols=89  Identities=16%  Similarity=0.216  Sum_probs=70.8

Q ss_pred             EEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcC-C---CEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           38 GAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKK-G---DGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        38 ~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~-G---Dv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      .....+++||..+..||| ...|+++|++|++.+.+-++...+ ...++. |   |+++||+|+.|.+.|.|+++++++.
T Consensus       273 q~~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~~  351 (369)
T 3st7_A          273 QVSVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDE-IIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIM  351 (369)
T ss_dssp             EEEEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCC-CEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEEE
T ss_pred             eEEEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCc-EEEEEecCCcceEEEeCCCceEEeEEcCCCcEEEEE
Confidence            345678899999999999 888999999999999876554433 367776 8   9999999999999999988999988


Q ss_pred             EeeCCCCCCCCceeEEe
Q 018395          113 LGDTSKGHKAGEFTNFF  129 (356)
Q Consensus       113 i~~~~~~~~pg~~~~f~  129 (356)
                      ..+..  -+|.+..+|+
T Consensus       352 ~~~~~--y~~~~~d~~~  366 (369)
T 3st7_A          352 WVNEM--FDPNQPDTYF  366 (369)
T ss_dssp             EESSC--CCSSSCCCEE
T ss_pred             ecCcc--cCCCCCcccc
Confidence            76532  3444444444

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=98.62  E-value=2.3e-07  Score=73.02  Aligned_cols=74  Identities=9%  Similarity=-0.008  Sum_probs=59.3

Q ss_pred             CceeEEEEecCCCeecccccccCCeeE-EEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQV-TYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei-~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~  300 (356)
                      ++.+.++.+.||....+|||+. ..|+ .||++|++++.+-+  |+   ...|++||++++|+|.+|...+.. ++.++.
T Consensus        32 ~~~~~~~~~~~g~~~~~H~H~~-~~e~~~~vl~G~~~~~~~~--~~---~~~l~~Gd~~~ip~~~~H~~~~~~-~~~~l~  104 (110)
T 2q30_A           32 NFKIVSFTFKAGQELPVHSHNI-EGELNIVVLEGEGEFVGDG--DA---VIPAPRGAVLVAPISTPHGVRAVT-DMKVLV  104 (110)
T ss_dssp             SCEEEEEEECTTCEEEEECCSS-SCEEEEEEEESCEEEECGG--GC---EEEECTTEEEEEETTSCEEEEESS-SEEEEE
T ss_pred             CEEEEEEEECCCCcCCcccCCC-CccEEEEEEeCEEEEEeCC--CE---EEEECCCCEEEeCCCCcEEEEEcC-CcEEEE
Confidence            5788999999999999999986 5788 89999999987631  22   257999999999999999986543 356665


Q ss_pred             EE
Q 018395          301 II  302 (356)
Q Consensus       301 ~~  302 (356)
                      ++
T Consensus       105 ~~  106 (110)
T 2q30_A          105 TI  106 (110)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=98.60  E-value=5.2e-08  Score=79.72  Aligned_cols=67  Identities=18%  Similarity=0.320  Sum_probs=54.9

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT  106 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e  106 (356)
                      ..+.+...+++||... .|+|..+|++|||+|++.+.+  +++  ...+|++||++++|+|..|.+.|.++.
T Consensus        47 g~~~~g~w~~~pG~~~-~~~~~~~E~~~Vl~G~~~l~~--~~g--~~~~l~~GD~~~ip~g~~h~~~~~~~~  113 (123)
T 3bcw_A           47 GKVESGVWESTSGSFQ-SNTTGYIEYCHIIEGEARLVD--PDG--TVHAVKAGDAFIMPEGYTGRWEVDRHV  113 (123)
T ss_dssp             TTEEEEEEEEEEEEEE-CCCTTEEEEEEEEEEEEEEEC--TTC--CEEEEETTCEEEECTTCCCEEEEEEEE
T ss_pred             CCEEEEEEEECCCcee-eEcCCCcEEEEEEEEEEEEEE--CCC--eEEEECCCCEEEECCCCeEEEEECCce
Confidence            4688999999999765 466544899999999999974  233  237999999999999999999997654

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=98.57  E-value=1.7e-07  Score=80.96  Aligned_cols=79  Identities=13%  Similarity=0.068  Sum_probs=66.8

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~  300 (356)
                      |..+.+++|.||+-..+|.|.  ..|+.||++|++++.+-+  |+.   ..|++||.+ ||+|.+|.. |.+++.++++.
T Consensus        78 G~~~~~v~l~PG~~~~~H~H~--~eE~~~VLeGel~l~ld~--ge~---~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~  149 (172)
T 3es1_A           78 GSVIRVVDMLPGKESPMHRTN--SIDYGIVLEGEIELELDD--GAK---RTVRQGGII-VQRGTNHLWRNTTDKPCRIAF  149 (172)
T ss_dssp             SEEEEEEEECTTCBCCCBCCS--EEEEEEEEESCEEEECGG--GCE---EEECTTCEE-EECSCCBEEECCSSSCEEEEE
T ss_pred             CeEEEEEEECCCCCCCCeecC--ceEEEEEEeCEEEEEECC--CeE---EEECCCCEE-EeCCCcEEEEeCCCCCEEEEE
Confidence            678899999999999999996  578999999999998642  222   579999999 999999999 45788999999


Q ss_pred             EEcCCCCc
Q 018395          301 IITTPNPI  308 (356)
Q Consensus       301 ~~~~~~p~  308 (356)
                      +.+...|-
T Consensus       150 V~~P~~p~  157 (172)
T 3es1_A          150 ILIEAPAY  157 (172)
T ss_dssp             EEEECCCC
T ss_pred             EEcCCCce
Confidence            98877763

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=98.52  E-value=4.6e-07  Score=79.19  Aligned_cols=147  Identities=7%  Similarity=0.024  Sum_probs=89.8

Q ss_pred             cCcHHHHHhhccCCHHHHHHhhcccCC---ceEEEcCCCCcCCCCC--cccCCC-ceeeccCCCCCcccCCCcEEEEeCC
Q 018395          139 GFSTEFVSRAWDLDENTVKTLVGKQTG---KGIVKLDANAKLPEPK--KEHRDG-MAFNCEEAPLDVDIKNGGRVVLLNT  212 (356)
Q Consensus       139 ~~~~~vl~~af~~~~~~~~~l~~~q~~---~~iv~~~~~~~~~~p~--~~~~~~-~~~~l~~~~~~~~~~~gG~~~~~~~  212 (356)
                      +++.+-||+..|++...+.++...+..   ..+.++.+-.. ..+.  ...... ..   .  .. +....+|..+..- 
T Consensus        24 gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~-v~~~~l~~~~~~~~~---~--~~-~~~~~~g~~~~~l-   95 (192)
T 1y9q_A           24 GLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLE-ASFSAFFANDPQLLS---S--ER-SFPDDLNMKIHTL-   95 (192)
T ss_dssp             TCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHT-CCSGGGGTTSTHHHH---H--CC-BCTTCTTEEEEEE-
T ss_pred             CCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC-cCHHHHcCCCCCCCc---c--ce-EEeCCCCEEEEEe-
Confidence            688899999999999999998765421   11111111000 0000  000000 00   0  00 1122334332221 


Q ss_pred             CCCCCccccCceeEEEEecCCCeec--ccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEe
Q 018395          213 KNLPLVGEVGCGADLVRLDGKAMCS--PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI  290 (356)
Q Consensus       213 ~~~p~l~~l~~s~~~v~l~~g~~~~--PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~  290 (356)
                        .|....-.+.+..+.+.||+...  +|||.  ..|+.||++|++.+.+-   + +  ...|++||.++||++.+|...
T Consensus        96 --~~~~~~~~~~~~~~~~~pg~~~~~~~H~h~--~~E~~~Vl~G~~~~~~~---~-~--~~~l~~GD~i~i~~~~~H~~~  165 (192)
T 1y9q_A           96 --FPYAADTGLEIFEITLLDHHQQMSSPHALG--VIEYIHVLEGIMKVFFD---E-Q--WHELQQGEHIRFFSDQPHGYA  165 (192)
T ss_dssp             --EEEETTTTEEEEEEEECTTCEEEECCCSTT--CEEEEEEEESCEEEEET---T-E--EEEECTTCEEEEECSSSEEEE
T ss_pred             --ccCCCCCcEEEEEEEECCCCCccCCCCCCC--CEEEEEEEEeEEEEEEC---C-E--EEEeCCCCEEEEcCCCCeEeE
Confidence              12223345788999999999887  55553  58999999999998762   2 3  257999999999999999995


Q ss_pred             e-CCCCeEEEEEEcC
Q 018395          291 A-DPDGLAWFSIITT  304 (356)
Q Consensus       291 ~-~~~~~~~~~~~~~  304 (356)
                      + +++++ ++.+...
T Consensus       166 n~~~~~~-~l~v~~~  179 (192)
T 1y9q_A          166 AVTEKAV-FQNIVAY  179 (192)
T ss_dssp             ESSSCEE-EEEEEEC
T ss_pred             CCCCCcE-EEEEEec
Confidence            5 67778 7776643

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.51  E-value=6.4e-08  Score=84.20  Aligned_cols=66  Identities=18%  Similarity=0.262  Sum_probs=53.1

Q ss_pred             ccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeC
Q 018395           50 ALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDT  116 (356)
Q Consensus        50 ~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~  116 (356)
                      ..+|+|..+|+.||++|++.+.+. .+++.....+++||+++||+|..|+..+..+..+..+-++.+
T Consensus        93 ~~~H~H~~~Ei~~Vl~G~g~~~i~-~~d~~~~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~  158 (179)
T 1zrr_A           93 LNEHTHGEDEVRFFVEGAGLFCLH-IGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDN  158 (179)
T ss_dssp             HSCBEESSCEEEEEEESCCCCCEE-CSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECC
T ss_pred             ccceECChheEEEEEcceEEEEEE-eCCEEEEEEECCCCEEEECCCCeEeeecCCCceEEEEEeccC
Confidence            578999779999999999999875 334433457999999999999999998876666777776653

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=98.49  E-value=4.7e-07  Score=74.96  Aligned_cols=71  Identities=13%  Similarity=0.245  Sum_probs=58.3

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+++..+.+.||   ..|||.. ..|+.||++|++++++-   |+.   ..|++||+++||+|..|...+ .+.++++.+
T Consensus        56 ~~~~~~~~~~pG---~~~~h~~-~~E~~~VLeG~~~l~~~---g~~---~~l~~GD~i~~p~g~~h~~~~-~~~~~~l~v  124 (133)
T 2pyt_A           56 SMAAGFMQWDNA---FFPWTLN-YDEIDMVLEGELHVRHE---GET---MIAKAGDVMFIPKGSSIEFGT-PTSVRFLYV  124 (133)
T ss_dssp             SSEEEEEEEEEE---EEEEECS-SEEEEEEEEEEEEEEET---TEE---EEEETTCEEEECTTCEEEEEE-EEEEEEEEE
T ss_pred             cEEEEEEEECCC---CccccCC-CCEEEEEEECEEEEEEC---CEE---EEECCCcEEEECCCCEEEEEe-CCCEEEEEE
Confidence            588999999999   4678887 89999999999998872   433   479999999999999999854 456777776


Q ss_pred             Ec
Q 018395          302 IT  303 (356)
Q Consensus       302 ~~  303 (356)
                      ..
T Consensus       125 ~~  126 (133)
T 2pyt_A          125 AW  126 (133)
T ss_dssp             EE
T ss_pred             Ec
Confidence            54

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=98.48  E-value=6.9e-07  Score=76.62  Aligned_cols=72  Identities=13%  Similarity=0.156  Sum_probs=60.5

Q ss_pred             ceeEEEEecC-CCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEE
Q 018395          223 CGADLVRLDG-KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFS  300 (356)
Q Consensus       223 ~s~~~v~l~~-g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~  300 (356)
                      +....+.|.| |+-..||.|.. +.|+.||++|++.+++-+    +  ...|++||.++||+|..|.+ |.+++.++++.
T Consensus        88 ~~~~~v~lpP~G~~~~~~~~h~-gEE~~yVLeG~v~vtl~g----~--~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~  160 (166)
T 2vpv_A           88 FASGILKLPAISGQKKLSNSFR-TYITFHVIQGIVEVTVCK----N--KFLSVKGSTFQIPAFNEYAIANRGNDEAKMFF  160 (166)
T ss_dssp             CEEEEEEECSSGGGCEEEECCS-EEEEEEEEESEEEEEETT----E--EEEEETTCEEEECTTCEEEEEECSSSCEEEEE
T ss_pred             ceeEEEEECCCCCCCCCccCCC-ceEEEEEEEeEEEEEECC----E--EEEEcCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence            6677899999 88888887777 999999999999999833    3  24799999999999999999 55777777775


Q ss_pred             E
Q 018395          301 I  301 (356)
Q Consensus       301 ~  301 (356)
                      +
T Consensus       161 V  161 (166)
T 2vpv_A          161 V  161 (166)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=98.48  E-value=2e-05  Score=72.08  Aligned_cols=63  Identities=22%  Similarity=0.179  Sum_probs=52.4

Q ss_pred             EEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395           42 LALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT  106 (356)
Q Consensus        42 ~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e  106 (356)
                      ..=.||.....| | ..+|++|+++|...+.+.+. ++-+...|++||++++|+|++|.-+...+.
T Consensus        36 ~vgGpN~R~d~H-~~~~dE~FyqlkG~m~l~~~d~-g~~~~V~i~eGemfllP~gv~HsP~r~~et   99 (286)
T 2qnk_A           36 FIGGPNTRKDYH-IEEGEEVFYQLEGDMVLRVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQRFANT   99 (286)
T ss_dssp             EECSCBCCCCEE-ECSSCEEEEEEESCEEEEEEET-TEEEEEEECTTEEEEECTTCCEEEEECTTC
T ss_pred             EEeCCCcCccCc-CCCCCeEEEEEeCeEEEEEEeC-CceeeEEECCCeEEEeCCCCCcCCcccCCe
Confidence            344567778888 6 99999999999999999874 445678999999999999999999885543

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=98.47  E-value=1.2e-06  Score=74.81  Aligned_cols=73  Identities=11%  Similarity=-0.014  Sum_probs=62.2

Q ss_pred             ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec--CCCcEEEEEE
Q 018395           36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK--EDTELVVLFL  113 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~--g~e~l~~l~i  113 (356)
                      +..+.+++++||+..++|.|...|..|||+|+...   +.++    ..+++||.++.|+|..|...+.  +++++.++.+
T Consensus        41 g~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~---~e~~----~~~~~Gd~~~~P~g~~H~~~~~~~~~e~~~~~~~  113 (159)
T 3ebr_A           41 GETITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRY---KEHD----WVAHAGSVVYETASTRHTPQSAYAEGPDIITFNI  113 (159)
T ss_dssp             TEEEEEEEECSSCBCCCEEESSCEEEEEEESCEEE---TTSS----CCBCTTCEEEECSSEEECEEESSSSSSCEEEEEE
T ss_pred             CeEEEEEEECCCCCcccccCCCCEEEEEEEeEEEE---eCCC----eEECCCeEEEECCCCcceeEeCCCCCCCEEEEEE
Confidence            57788999999999999999889999999999875   2222    4799999999999999999998  7788887775


Q ss_pred             ee
Q 018395          114 GD  115 (356)
Q Consensus       114 ~~  115 (356)
                      .+
T Consensus       114 ~~  115 (159)
T 3ebr_A          114 VA  115 (159)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=98.47  E-value=6.8e-07  Score=71.21  Aligned_cols=72  Identities=10%  Similarity=0.121  Sum_probs=58.1

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      ++.+..+.+.+|.-..+|||+  ..|+.||++|++.+.+-   + +  ...|++||.+++|+|.+|...+. +++.++.+
T Consensus        37 ~~~~~~~~~~~g~~~~~H~h~--~~e~~~vl~G~~~~~i~---~-~--~~~l~~Gd~i~i~~~~~H~~~~~-~~~~~~~i  107 (114)
T 2ozj_A           37 RVQISLFSFADGESVSEEEYF--GDTLYLILQGEAVITFD---D-Q--KIDLVPEDVLMVPAHKIHAIAGK-GRFKMLQI  107 (114)
T ss_dssp             SEEEEEEEEETTSSCCCBCCS--SCEEEEEEEEEEEEEET---T-E--EEEECTTCEEEECTTCCBEEEEE-EEEEEEEE
T ss_pred             CceEEEEEECCCCccccEECC--CCeEEEEEeCEEEEEEC---C-E--EEEecCCCEEEECCCCcEEEEeC-CCcEEEEE
Confidence            356777888999989999997  57999999999998872   2 2  35799999999999999998654 46666665


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       108 ~  108 (114)
T 2ozj_A          108 T  108 (114)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.46  E-value=9.3e-07  Score=85.02  Aligned_cols=86  Identities=15%  Similarity=0.131  Sum_probs=69.4

Q ss_pred             EEEeCCCC-CCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEE
Q 018395           21 YHAWCPNE-LPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTW   99 (356)
Q Consensus        21 i~~~~~~~-~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~   99 (356)
                      ++..++.+ -+.+  ..|++....|.||....+|-|.++++++|++|+|.+.+   ++  +.+++++||+|++|++..|.
T Consensus       264 ~~y~NP~tg~~~~--pti~~~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I---~~--~~~~w~~gD~fvvP~w~~h~  336 (368)
T 3nw4_A          264 IRYVNPTTGGDVM--PTLRCEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVM---NG--ETTKLEKGDMFVVPSWVPWS  336 (368)
T ss_dssp             EECBCTTTSSBSS--SSCEEEEEEECTTCBCCCEEESSCEEEEEEESCEEEEE---TT--EEEEECTTCEEEECTTCCEE
T ss_pred             EEEeCCCCCCCcc--hhHHhheEEECCCCccCCeeccccEEEEEEeCcEEEEE---CC--EEEEecCCCEEEECCCCcEE
Confidence            45555432 1223  46788999999999999999988899999999999987   33  45899999999999999999


Q ss_pred             EEecCCCcEEEEEEee
Q 018395          100 WYNKEDTELVVLFLGD  115 (356)
Q Consensus       100 ~~N~g~e~l~~l~i~~  115 (356)
                      ..|.  +++.++++.|
T Consensus       337 ~~n~--~~a~Lf~~~D  350 (368)
T 3nw4_A          337 LQAE--TQFDLFRFSD  350 (368)
T ss_dssp             EEES--SSEEEEEEES
T ss_pred             EEeC--CCEEEEEEeC
Confidence            9997  4677776644

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.41  E-value=3.6e-06  Score=71.05  Aligned_cols=87  Identities=14%  Similarity=0.218  Sum_probs=64.0

Q ss_pred             CcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcC
Q 018395          204 GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPR  283 (356)
Q Consensus       204 gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~  283 (356)
                      +.++..+-..+-..    .+++..+++. ++  ..|||.. -.|+.||++|++++++   +|+.   ..|++||+++||+
T Consensus        51 ~v~i~~l~s~~~~~----~~s~g~~~~e-~~--~~~~~~~-~eE~~yVLeG~~~l~i---~g~~---~~l~~GD~i~iP~  116 (151)
T 4axo_A           51 VVYTKDLFTLEESP----RLGCGMMEMK-ET--TFDWTLN-YDEIDYVIDGTLDIII---DGRK---VSASSGELIFIPK  116 (151)
T ss_dssp             CEEEEECSCTTTCS----SCEEEEEEEE-EE--EEEEECS-SEEEEEEEEEEEEEEE---TTEE---EEEETTCEEEECT
T ss_pred             CEEEEEeecCCCCC----cEEEEEEEEc-Cc--cccEeCC-CcEEEEEEEeEEEEEE---CCEE---EEEcCCCEEEECC
Confidence            45555554443211    4778888887 43  3578888 8999999999999996   3433   5799999999999


Q ss_pred             CcEEEEeeCCCCeEEEEEEcCC
Q 018395          284 FYVVSKIADPDGLAWFSIITTP  305 (356)
Q Consensus       284 g~~h~~~~~~~~~~~~~~~~~~  305 (356)
                      |..|...+. +.++++.+.+..
T Consensus       117 G~~h~~~n~-~~a~~l~V~~P~  137 (151)
T 4axo_A          117 GSKIQFSVP-DYARFIYVTYPA  137 (151)
T ss_dssp             TCEEEEEEE-EEEEEEEEEECS
T ss_pred             CCEEEEEeC-CCEEEEEEECCC
Confidence            999998554 678888876543

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=98.39  E-value=4.7e-07  Score=71.39  Aligned_cols=70  Identities=14%  Similarity=0.101  Sum_probs=52.6

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      ..++.+.||.. .+|||+. ..|+.||++|++++.+-+  ++   ...|++||++++|+|.+|...+. +++.++.+.
T Consensus        30 ~~~~~~~~g~~-~~H~H~~-~~E~~~Vl~G~~~~~~~~--~~---~~~l~~Gd~~~ip~~~~H~~~~~-~~~~~l~i~   99 (107)
T 2i45_A           30 QFHLVKLLGDY-GWHTHGY-SDKVLFAVEGDMAVDFAD--GG---SMTIREGEMAVVPKSVSHRPRSE-NGCSLVLIE   99 (107)
T ss_dssp             EEEEEEEEEEC-CCBCC---CCEEEEESSSCEEEEETT--SC---EEEECTTEEEEECTTCCEEEEEE-EEEEEEEEE
T ss_pred             EEEEEECCCCC-cceeCCC-CCEEEEEEeCEEEEEECC--Cc---EEEECCCCEEEECCCCcEeeEeC-CCeEEEEEE
Confidence            45566778874 5999987 799999999999988643  12   25799999999999999998653 456666554

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.38  E-value=7.3e-07  Score=69.09  Aligned_cols=60  Identities=15%  Similarity=0.208  Sum_probs=47.6

Q ss_pred             CeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          234 AMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       234 ~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      +...+|||+. ..|+.||++|++++.+-+   +   ...|++||++++|+|.+|...+. +++.++.+
T Consensus        40 ~~~~~H~H~~-~~e~~~v~~G~~~~~~~~---~---~~~l~~Gd~~~ip~~~~H~~~~~-~~~~~l~i   99 (102)
T 3d82_A           40 GEFVWHEHAD-TDEVFIVMEGTLQIAFRD---Q---NITLQAGEMYVIPKGVEHKPMAK-EECKIMII   99 (102)
T ss_dssp             EECCCBCCTT-CCEEEEEEESEEEEECSS---C---EEEEETTEEEEECTTCCBEEEEE-EEEEEEEE
T ss_pred             CCCCceeCCC-CcEEEEEEeCEEEEEECC---E---EEEEcCCCEEEECCCCeEeeEcC-CCCEEEEE
Confidence            4578999987 799999999999887632   2   35799999999999999998654 34555554

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=98.36  E-value=1.1e-06  Score=73.81  Aligned_cols=74  Identities=5%  Similarity=-0.287  Sum_probs=56.9

Q ss_pred             eEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEE-EEecCCCcEEEEEEee
Q 018395           37 IGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTW-WYNKEDTELVVLFLGD  115 (356)
Q Consensus        37 ~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~-~~N~g~e~l~~l~i~~  115 (356)
                      -.+.+++++||+..++|.|...|.+|||+|+....   .+.......+++||.+++|+|..|. ..+.  +++.+++++.
T Consensus        44 ~~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~~---~g~~~~~~~~~~Gd~~~~p~g~~H~p~~~~--e~~~~l~~~~  118 (145)
T 2o1q_A           44 SWTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVR---GGKAAGGDTAIAPGYGYESANARHDKTEFP--VASEFYMSFL  118 (145)
T ss_dssp             EEEEEEEECTTEEECCEEESSCEEEEEEEEEEEET---TCGGGTSEEEESSEEEEECTTCEESCCEEE--EEEEEEEEEE
T ss_pred             cEEEEEEECCCCCCCccCCCCCEEEEEEEeEEEEc---CCCEecceEeCCCEEEEECcCCccCCeECC--CCeEEEEEEC
Confidence            35788999999999999997778899999999853   1221112689999999999999999 5443  3356666654

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=98.36  E-value=2.9e-06  Score=72.47  Aligned_cols=62  Identities=19%  Similarity=0.092  Sum_probs=53.5

Q ss_pred             EEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecC
Q 018395           42 LALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKE  104 (356)
Q Consensus        42 ~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g  104 (356)
                      ..-.||+....|+|..+|++||++|+..+.+.+. ++.+...|++||++++|+|++|+-+..+
T Consensus        40 ~v~Gpn~r~d~H~h~~dE~FyvlkG~m~i~v~d~-g~~~~v~l~eGE~f~lP~gvpH~P~r~~  101 (174)
T 1yfu_A           40 VVGGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVD-GRRERADLKEGDIFLLPPHVRHSPQRPE  101 (174)
T ss_dssp             EECSCBCCCCEEECSSCEEEEEEESCEEEEEEET-TEEEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred             EEcCCCcCccCcCCCCceEEEEEeeEEEEEEEcC-CceeeEEECCCCEEEeCCCCCcCccccC
Confidence            4556888899998899999999999999998763 3356789999999999999999997765

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.36  E-value=2.3e-06  Score=82.13  Aligned_cols=81  Identities=15%  Similarity=0.083  Sum_probs=61.6

Q ss_pred             CceeEEEEecCCCeec---ccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeE
Q 018395          222 GCGADLVRLDGKAMCS---PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLA  297 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~---PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~  297 (356)
                      .+++. ..+.|++-..   +|||++ ..|+.||++|++++.+-+.+|.+ -...|++||.++||+|.+|...| +++. +
T Consensus        47 ~~~~~-~~~~p~g~~~~~~~H~H~~-~~E~~~Vl~G~~~~~v~~~~g~~-~~~~L~~GD~v~ip~g~~H~~~n~~~~~-~  122 (350)
T 1juh_A           47 AFTLM-GTNAPHSDALGVLPHIHQK-HYENFYCNKGSFQLWAQSGNETQ-QTRVLSSGDYGSVPRNVTHTFQIQDPDT-E  122 (350)
T ss_dssp             SCEEE-EEEECCCSSCSSCCEECSS-CEEEEEEEESEEEEEEEETTSCC-EEEEEETTCEEEECTTEEEEEEECSTTE-E
T ss_pred             cEEEE-EEEcCCCCCCCCccccCCC-ceEEEEEEEEEEEEEECCcCCce-EEEEECCCCEEEECCCCcEEEEeCCCCC-E
Confidence            35566 4555655544   899998 89999999999999988745432 24589999999999999999955 5554 7


Q ss_pred             EEEEEcCCC
Q 018395          298 WFSIITTPN  306 (356)
Q Consensus       298 ~~~~~~~~~  306 (356)
                      ++.+++...
T Consensus       123 ~l~v~~p~~  131 (350)
T 1juh_A          123 MTGVIVPGG  131 (350)
T ss_dssp             EEEEEESSC
T ss_pred             EEEEEcCcc
Confidence            777765544

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=98.27  E-value=2.3e-06  Score=73.41  Aligned_cols=74  Identities=12%  Similarity=0.091  Sum_probs=60.0

Q ss_pred             ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecC--CCcEEEEEE
Q 018395           36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKE--DTELVVLFL  113 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g--~e~l~~l~i  113 (356)
                      +..+.+++++||+..++|.|...|..|||+|+....    +.  ..+.+++||.++.|+|..|...+..  ++++.++.+
T Consensus        42 g~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~~----~~--~~~~~~aGd~~~~P~g~~H~~~a~~~~~~gci~l~v  115 (165)
T 3cjx_A           42 GLMVMRASFAPGLTLPLHFHTGTVHMYTISGCWYYT----EY--PGQKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVIFM  115 (165)
T ss_dssp             TEEEEEEEECTTCBCCEEEESSCEEEEEEESEEEET----TC--TTSCEETTEEEEECTTCEECEECCTTCSSCEEEEEE
T ss_pred             CcEEEEEEECCCCcCCcccCCCCEEEEEEEEEEEEC----CC--ceEEECCCeEEEeCCCCceeeEeCCCCCCCcEEEEE
Confidence            467889999999999999998899999999998762    11  1257899999999999999999864  336766655


Q ss_pred             ee
Q 018395          114 GD  115 (356)
Q Consensus       114 ~~  115 (356)
                      .+
T Consensus       116 ~~  117 (165)
T 3cjx_A          116 LS  117 (165)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.26  E-value=8.3e-06  Score=71.37  Aligned_cols=79  Identities=13%  Similarity=0.245  Sum_probs=60.7

Q ss_pred             eeEEEEecCCC----------eecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC
Q 018395          224 GADLVRLDGKA----------MCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP  293 (356)
Q Consensus       224 s~~~v~l~~g~----------~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~  293 (356)
                      +...+.+.++.          ....|+|+.  .|+.||++|++.+.+-+.++ +.+...+++||+++||+|..|+..++.
T Consensus        75 ~~D~v~~~p~~~p~~~~k~~~~~~~H~H~~--~Ei~yVleG~G~f~i~d~~d-~~~~i~v~~GDlIiIPaG~~H~f~~~~  151 (191)
T 1vr3_A           75 WMDIITICKDTLPNYEEKIKMFFEEHLHLD--EEIRYILEGSGYFDVRDKED-KWIRISMEKGDMITLPAGIYHRFTLDE  151 (191)
T ss_dssp             EEEEEEESTTTSTTHHHHHHHHHSCEECSS--CEEEEEEEEEEEEEEECTTS-CEEEEEEETTEEEEECTTCCEEEEECT
T ss_pred             ceeEEEECCCcCcchhhhhccCCcceECCc--ceEEEEEeceEEEEECCCCC-eEEEEEECCCCEEEECcCCcCCcccCC
Confidence            34555566554          347899985  69999999999999988644 345568999999999999999987754


Q ss_pred             -CCeEEEEEEcCC
Q 018395          294 -DGLAWFSIITTP  305 (356)
Q Consensus       294 -~~~~~~~~~~~~  305 (356)
                       ..+..+.++...
T Consensus       152 ~~~~~airlF~~~  164 (191)
T 1vr3_A          152 KNYVKAMRLFVGE  164 (191)
T ss_dssp             TCCEEEEEEESSS
T ss_pred             CCCEEEEEEECCC
Confidence             457778777554

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=98.24  E-value=5.9e-06  Score=71.24  Aligned_cols=78  Identities=13%  Similarity=0.141  Sum_probs=61.2

Q ss_pred             ceEEEEEEecCCCcccCeee-C------CCEEEEEEeCeEEEEEEcCCCce------------------EEEEEcCCCEE
Q 018395           36 NIGAAKLALEKNGFALPHYC-D------SARVAYVLQGSGVAGIVLPEKEE------------------KVVAIKKGDGI   90 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h-~------a~e~~yVl~G~~~~~vv~~~~~~------------------~~~~l~~GDv~   90 (356)
                      .+....+.+.||...+.|+| .      -.|-++|+.|.+++.+  ++...                  ....|++||.+
T Consensus        52 ~Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~--~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesv  129 (175)
T 2y0o_A           52 RYCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV--EGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQY  129 (175)
T ss_dssp             SEEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE--SSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEE
T ss_pred             CceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE--CCccccCcceeccCCceeeecCCcEEEECCCCEE
Confidence            48888999999999999999 7      7888889999988866  22211                  23599999999


Q ss_pred             EeCCCcEEEEEecCCCcEEEEEEeeC
Q 018395           91 ALPFGVVTWWYNKEDTELVVLFLGDT  116 (356)
Q Consensus        91 ~iP~G~~H~~~N~g~e~l~~l~i~~~  116 (356)
                      .+|+|..||++|. .+.+.+.-+...
T Consensus       130 tIppg~~H~f~ag-eegvli~EvSt~  154 (175)
T 2y0o_A          130 TIPPNTKHWFQAG-EEGAVVTEMSST  154 (175)
T ss_dssp             EECTTCCEEEEEE-EEEEEEEEEEEC
T ss_pred             EECCCCcEEEEeC-CCCEEEEEEeCC
Confidence            9999999999993 344555554443

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=98.18  E-value=8.6e-06  Score=72.28  Aligned_cols=92  Identities=8%  Similarity=-0.060  Sum_probs=74.0

Q ss_pred             CCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEE
Q 018395          202 KNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIV  281 (356)
Q Consensus       202 ~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vv  281 (356)
                      .+.++...+.+... . ..-.+.+..+.+.||...+.|.|+  +.|+.||++|++++.+-+..     ...+++||++++
T Consensus       113 ~~~a~~elvGP~g~-~-~s~~l~lG~v~l~PG~~yP~HsHp--~EEiy~VLsG~~e~~v~~g~-----~~~l~pGd~v~i  183 (217)
T 4b29_A          113 NRFGWFELAGPSGH-F-LTQSLRVTVGYWGPGLDYGWHEHL--PEELYSVVSGRALFHLRNAP-----DLMLEPGQTRFH  183 (217)
T ss_dssp             HHEEEEEEEETTSS-E-ECSSCEEEEEEECSSCEEEEEECS--SEEEEEEEEECEEEEETTSC-----CEEECTTCEEEE
T ss_pred             hCceEEEEECCCCC-C-CCCeEEEEEEEECCCCcCCCCCCC--CceEEEEEeCCEEEEECCCC-----EEecCCCCEEEc
Confidence            55777777776543 2 223688999999999999999997  57999999999999886322     247999999999


Q ss_pred             cCCcEEEEeeCCCCeEEEEEE
Q 018395          282 PRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       282 P~g~~h~~~~~~~~~~~~~~~  302 (356)
                      |.|.+|...++++++..+-+.
T Consensus       184 psgv~Ha~rt~dePllalwvW  204 (217)
T 4b29_A          184 PANAPHAMTTLTDPILTLVLW  204 (217)
T ss_dssp             CTTCCEEEECCSSCEEEEEEE
T ss_pred             CCCCceeEEECCccEEEEEEE
Confidence            999999999888887655554

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=98.17  E-value=7.6e-06  Score=69.80  Aligned_cols=65  Identities=22%  Similarity=0.082  Sum_probs=53.0

Q ss_pred             EEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCC---CceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395           42 LALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPE---KEEKVVAIKKGDGIALPFGVVTWWYNKEDT  106 (356)
Q Consensus        42 ~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~---~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e  106 (356)
                      +.=.||.....|+|..+|++|+++|+..+.+.+.+   .+.+...|++||++++|+|++|+-+...+.
T Consensus        39 ~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~~e~  106 (176)
T 1zvf_A           39 IVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADT  106 (176)
T ss_dssp             EECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTC
T ss_pred             EEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCCcccCCc
Confidence            44457788889966999999999999999998743   134568999999999999999999775433

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.17  E-value=8.9e-06  Score=64.93  Aligned_cols=75  Identities=16%  Similarity=0.293  Sum_probs=53.3

Q ss_pred             CceeEEEEecCCCeeccc--ccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCC-CeE
Q 018395          222 GCGADLVRLDGKAMCSPG--FSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPD-GLA  297 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH--~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~-~~~  297 (356)
                      +..+.++. .+|....++  +|.. ..|+.||++|++++.+-+.  ..  ...|++||.++||+|.+|...+ +++ .+.
T Consensus        30 ~~~i~~i~-~~g~~~~~~~~~~~~-~~E~~~Vl~G~~~l~~~~~--~~--~~~l~~Gd~i~ipa~~~H~~~n~~~~~~~~  103 (112)
T 2opk_A           30 GLKIERII-SNGQASPPGFWYDSP-QDEWVMVVSGSAGIECEGD--TA--PRVMRPGDWLHVPAHCRHRVAWTDGGEPTV  103 (112)
T ss_dssp             TEEEEEEE-ESSCCCCTTCCBCCS-SEEEEEEEESCEEEEETTC--SS--CEEECTTEEEEECTTCCEEEEEECSSSCEE
T ss_pred             CEEEEEEE-eCCccCCCCccccCC-ccEEEEEEeCeEEEEECCE--EE--EEEECCCCEEEECCCCcEEEEeCCCCCCEE
Confidence            45555554 345445552  4445 7899999999999987442  10  1469999999999999999954 554 677


Q ss_pred             EEEEE
Q 018395          298 WFSII  302 (356)
Q Consensus       298 ~~~~~  302 (356)
                      |++++
T Consensus       104 ~l~v~  108 (112)
T 2opk_A          104 WLAVH  108 (112)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88776

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.16  E-value=1.1e-05  Score=67.57  Aligned_cols=75  Identities=17%  Similarity=0.245  Sum_probs=58.3

Q ss_pred             eEEEEEEecCCCcc-----cCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC-CcEEE
Q 018395           37 IGAAKLALEKNGFA-----LPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED-TELVV  110 (356)
Q Consensus        37 ~~~~~~~l~Pg~~~-----~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~-e~l~~  110 (356)
                      +.++.-...|+...     .||.|+.-++.||++|++.+.+   ++  +.+.+++||++++|+|.+|...+.++ ++.+.
T Consensus        13 ~~~G~~~~~~~~~~~~~~~~p~~h~~~~i~~v~~G~~~~~i---~~--~~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~   87 (164)
T 2arc_A           13 LVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKN---QG--REFVCRPGDILLFPPGEIHHYGRHPEAREWYH   87 (164)
T ss_dssp             CEEEEEEEETTSTTCSCEEETTCCSSEEEEEEEEECEEEEE---TT--EEEEECTTCEEEECTTCCEEEEECTTSSEEEE
T ss_pred             hhhcceeeccCCchhhhhccccCCCceEEEEEEEeEEEEEE---CC--EEEEecCCeEEEEcCCCCEEEEeCCCCCcEEE
Confidence            34455566665432     5888989999999999999987   33  45899999999999999999988763 66777


Q ss_pred             EEEeeC
Q 018395          111 LFLGDT  116 (356)
Q Consensus       111 l~i~~~  116 (356)
                      +++..+
T Consensus        88 ~~i~f~   93 (164)
T 2arc_A           88 QWVYFR   93 (164)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            776554

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=98.11  E-value=2.9e-05  Score=66.86  Aligned_cols=82  Identities=16%  Similarity=0.179  Sum_probs=68.1

Q ss_pred             CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCC-Cc---eEEEEEcCCCEEEeCCCcEEEEEecCCCcEE
Q 018395           35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPE-KE---EKVVAIKKGDGIALPFGVVTWWYNKEDTELV  109 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~-~~---~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~  109 (356)
                      .++.+..+...||...++|=| .+..+++|++|+.+..+.... +.   .....+.+||++++|++.+|.+.|.++++++
T Consensus        67 ~~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~~~aV  146 (171)
T 3eqe_A           67 NELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTSERMV  146 (171)
T ss_dssp             SSCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSSSCEE
T ss_pred             CCeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCCCCEE
Confidence            367889999999999999999 678999999999998876432 21   1347899999999999999999999998877


Q ss_pred             EEEEeeC
Q 018395          110 VLFLGDT  116 (356)
Q Consensus       110 ~l~i~~~  116 (356)
                      -|-+..+
T Consensus       147 SlHvY~p  153 (171)
T 3eqe_A          147 SLHVYSP  153 (171)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            7766553

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=98.11  E-value=1.7e-05  Score=65.41  Aligned_cols=78  Identities=12%  Similarity=0.132  Sum_probs=57.4

Q ss_pred             ceEEEEEEecCC----CcccCeee-CCCEEEEEEeCeEEEEEEcCCC---ceEEEEEcCCCEEEeCCCcEEEEEecCCCc
Q 018395           36 NIGAAKLALEKN----GFALPHYC-DSARVAYVLQGSGVAGIVLPEK---EEKVVAIKKGDGIALPFGVVTWWYNKEDTE  107 (356)
Q Consensus        36 ~~~~~~~~l~Pg----~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~---~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~  107 (356)
                      +-.++.....|.    .+...|.| +.+|+++|++|++++.+-+...   ......|++|++++||+|+.|.-....+  
T Consensus        24 ~W~Va~~n~~~~~~~~~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~e--  101 (140)
T 3d0j_A           24 KWLVCIKNWKPDNDIEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQKD--  101 (140)
T ss_dssp             SEEEEEEECCGGGBTTTCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEECTT--
T ss_pred             CEEEEEEeccCcCCcccCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCCCc--
Confidence            345555555553    57788999 8999999999999998853210   1235799999999999999999887543  


Q ss_pred             EEEEEEee
Q 018395          108 LVVLFLGD  115 (356)
Q Consensus       108 l~~l~i~~  115 (356)
                      ++++.|-.
T Consensus       102 ~~vLLiEp  109 (140)
T 3d0j_A          102 TKMMYVQD  109 (140)
T ss_dssp             CEEEEEEE
T ss_pred             eEEEEEEe
Confidence            56665543

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=98.06  E-value=1.4e-05  Score=65.81  Aligned_cols=71  Identities=10%  Similarity=0.062  Sum_probs=55.8

Q ss_pred             cCCCeecccccccCCeeEEEEEeceEEEEEEccC--CceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEc
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPD--GKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIIT  303 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~--g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~  303 (356)
                      ..+++...|-|.+ .+|+.+|++|++++.+-+..  +..--.-.|++|++++||+|..|.-.+ .+.++++.+-.
T Consensus        37 ~~~~i~~~h~H~~-tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a-~~e~~vLLiEp  109 (140)
T 3d0j_A           37 DIEGIAHLEIHHS-TDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSIT-QKDTKMMYVQD  109 (140)
T ss_dssp             BTTTCCEEEEESS-CCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEE-CTTCEEEEEEE
T ss_pred             CcccCHhhccCCC-CCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccC-CCceEEEEEEe
Confidence            4568899999999 99999999999999999631  111113489999999999999999887 44566666643

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.06  E-value=2.7e-05  Score=74.40  Aligned_cols=76  Identities=11%  Similarity=0.094  Sum_probs=62.1

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCC---cEEEEcCCcEEEEee-CCCCeEEEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAG---NLFIVPRFYVVSKIA-DPDGLAWFS  300 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~G---dv~vvP~g~~h~~~~-~~~~~~~~~  300 (356)
                      .....+.||.++..|||.+ -.|+.+|++|++++.+-++...+.+...+. |   ++++||.|++|.+.+ |+++++++.
T Consensus       274 ~~ls~~~~g~~rg~h~h~~-~~e~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ip~g~~h~~~n~~~~~~~~~~  351 (369)
T 3st7_A          274 VSVNISKPGITKGNHWHHT-KNEKFLVVSGKGVIRFRHVNDDEIIEYYVS-GDKLEVVDIPVGYTHNIENLGDTDMVTIM  351 (369)
T ss_dssp             EEEEEECTTCEEEEEECSS-CCEEEEEEESEEEEEEEETTCCCCEEEEEE-TTBCCEEEECTTEEEEEEECSSSCEEEEE
T ss_pred             EEEEEecCCceeccccccC-cceEEEEEeeeEEEEEEcCCCCcEEEEEec-CCcceEEEeCCCceEEeEEcCCCcEEEEE
Confidence            4556789999999999998 899999999999999987765554443331 6   999999999999955 778888877


Q ss_pred             EE
Q 018395          301 II  302 (356)
Q Consensus       301 ~~  302 (356)
                      .-
T Consensus       352 ~~  353 (369)
T 3st7_A          352 WV  353 (369)
T ss_dssp             EE
T ss_pred             ec
Confidence            64

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=98.06  E-value=3.9e-05  Score=65.64  Aligned_cols=130  Identities=18%  Similarity=0.186  Sum_probs=85.3

Q ss_pred             CCCeEEEEeCCCCC-CCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeE-EEEEEcCCCceEEEE----EcCCCE
Q 018395           16 GNGGSYHAWCPNEL-PMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSG-VAGIVLPEKEEKVVA----IKKGDG   89 (356)
Q Consensus        16 ~~~G~i~~~~~~~~-p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~-~~~vv~~~~~~~~~~----l~~GDv   89 (356)
                      .+||++++.....- +.-.....+....-|.+|....+|..+++|+.|...|.. ++.++.+++......    +.+|+.
T Consensus        27 PEGG~yret~rs~~~~~~~R~~~T~IYfLL~~g~~S~~HRv~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~Ge~  106 (170)
T 1yud_A           27 VEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGER  106 (170)
T ss_dssp             TTSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCEEEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTTEE
T ss_pred             CCCceEEEeecCCCCCCCCCccceEEEEEECCCCCCeeEEcCCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccCce
Confidence            38999976433220 111223467888999999976666669999999999995 888888877644333    678999


Q ss_pred             --EEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCC-ceeEEeecccccccccCcHHHHHhhccCCHHHHHHhh
Q 018395           90 --IALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAG-EFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLV  160 (356)
Q Consensus        90 --~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg-~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~  160 (356)
                        ++||+|+.+...+.+.+-+.+-|...      || +|++|-++         +++-|.+-|---++.+++|-
T Consensus       107 pQ~vVP~G~wqaa~~~~g~~~LV~C~Va------PGF~f~dfel~---------~~~~L~~~~P~~~~~I~~lt  165 (170)
T 1yud_A          107 PQFLVPKGCIFGSAMNQDGFSLVGCMVS------PGFTFDDFELF---------SQEALLAMYPQHKAVVQKLS  165 (170)
T ss_dssp             SCEEECTTCEEEEEESSSSEEEEEEEES------SCCCGGGCCBC---------BHHHHHHSCCTTHHHHTTSC
T ss_pred             eEEEECCCCEEEEEECCCCcEEEEEEEC------CCccCCceEEc---------CHHHHHhHCchhHHHHHHhh
Confidence              99999999999987325455555433      44 24444443         45555555555555555543

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.01  E-value=3.7e-06  Score=73.04  Aligned_cols=67  Identities=15%  Similarity=0.187  Sum_probs=52.8

Q ss_pred             eecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCC-CeEEEEEEcCC
Q 018395          235 MCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPD-GLAWFSIITTP  305 (356)
Q Consensus       235 ~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~-~~~~~~~~~~~  305 (356)
                      ...+|+|+.  .|+.||++|++...+. .+ .+.+...+++||+++||+|..|+..++.+ .+..+-++...
T Consensus        92 ~~~~H~H~~--~Ei~~Vl~G~g~~~i~-~~-d~~~~~~l~~GDli~IP~g~~H~~~~~~~~~~~~ir~F~~~  159 (179)
T 1zrr_A           92 FLNEHTHGE--DEVRFFVEGAGLFCLH-IG-DEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP  159 (179)
T ss_dssp             HHSCBEESS--CEEEEEEESCCCCCEE-CS-SCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG
T ss_pred             cccceECCh--heEEEEEcceEEEEEE-eC-CEEEEEEECCCCEEEECCCCeEeeecCCCceEEEEEeccCC
Confidence            457899985  6999999999999887 23 34455679999999999999999866544 47777777544

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=98.00  E-value=1.7e-05  Score=62.23  Aligned_cols=60  Identities=15%  Similarity=0.183  Sum_probs=45.9

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA  291 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~  291 (356)
                      .++....+.||...   ||-. ..|+.||++|++++.+-+  |+.   ..|++||+++||+|.+|...+
T Consensus        31 ~~~~~~~~~pg~~~---~hH~-~~E~~~Vl~G~~~~~i~~--g~~---~~l~~GD~i~ip~g~~H~~~n   90 (101)
T 1o5u_A           31 EKWPIWEKEVSEFD---WYYD-TNETCYILEGKVEVTTED--GKK---YVIEKGDLVTFPKGLRCRWKV   90 (101)
T ss_dssp             GGSCEEEECSEEEE---EECS-SCEEEEEEEEEEEEEETT--CCE---EEEETTCEEEECTTCEEEEEE
T ss_pred             eEEEEEEeCCCccc---ccCC-ceEEEEEEeCEEEEEECC--CCE---EEECCCCEEEECCCCcEEEEe
Confidence            34456778888642   4434 789999999999998731  333   579999999999999999855

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=97.92  E-value=2.2e-05  Score=63.97  Aligned_cols=63  Identities=22%  Similarity=0.260  Sum_probs=49.3

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD  292 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~  292 (356)
                      .+++....+.||... -|+|.  ..|+.||++|++++.+-  +|+.   .+|++||+++||+|..|...+.
T Consensus        48 ~~~~g~w~~~pG~~~-~~~~~--~~E~~~Vl~G~~~l~~~--~g~~---~~l~~GD~~~ip~g~~h~~~~~  110 (123)
T 3bcw_A           48 KVESGVWESTSGSFQ-SNTTG--YIEYCHIIEGEARLVDP--DGTV---HAVKAGDAFIMPEGYTGRWEVD  110 (123)
T ss_dssp             TEEEEEEEEEEEEEE-CCCTT--EEEEEEEEEEEEEEECT--TCCE---EEEETTCEEEECTTCCCEEEEE
T ss_pred             CEEEEEEEECCCcee-eEcCC--CcEEEEEEEEEEEEEEC--CCeE---EEECCCCEEEECCCCeEEEEEC
Confidence            377888899998765 35543  27999999999998862  3433   4799999999999999998553

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=97.91  E-value=1.2e-05  Score=67.33  Aligned_cols=77  Identities=10%  Similarity=0.036  Sum_probs=57.5

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      -.+..+++.||+...+|+|+. . |..||++|+.+.+    .|...-...+++||.+++|.|..|......+++.++.++
T Consensus        44 ~~~~~~~~~pG~~~p~H~H~~-~-ee~~VL~G~~~~~----~g~~~~~~~~~~Gd~~~~p~g~~H~p~~~~e~~~~l~~~  117 (145)
T 2o1q_A           44 SWTAIFDCPAGSSFAAHVHVG-P-GEYFLTKGKMDVR----GGKAAGGDTAIAPGYGYESANARHDKTEFPVASEFYMSF  117 (145)
T ss_dssp             EEEEEEEECTTEEECCEEESS-C-EEEEEEEEEEEET----TCGGGTSEEEESSEEEEECTTCEESCCEEEEEEEEEEEE
T ss_pred             cEEEEEEECCCCCCCccCCCC-C-EEEEEEEeEEEEc----CCCEecceEeCCCEEEEECcCCccCCeECCCCeEEEEEE
Confidence            357889999999999999986 4 5689999999843    332211247899999999999999953334556666666


Q ss_pred             cCC
Q 018395          303 TTP  305 (356)
Q Consensus       303 ~~~  305 (356)
                      +..
T Consensus       118 ~gp  120 (145)
T 2o1q_A          118 LGP  120 (145)
T ss_dssp             ESC
T ss_pred             CCc
Confidence            444

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=97.89  E-value=0.00039  Score=59.90  Aligned_cols=101  Identities=11%  Similarity=-0.106  Sum_probs=71.5

Q ss_pred             eeeCCCeEEEEeC-CCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCC------CceEEEEE
Q 018395           13 VYGGNGGSYHAWC-PNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPE------KEEKVVAI   84 (356)
Q Consensus        13 ~~~~~~G~i~~~~-~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~------~~~~~~~l   84 (356)
                      ++.-+.|.+.+.- ..+.+...-  .........||.++..|+| ...++++|++|++...+++-.      ++.....|
T Consensus        30 ~~~D~RG~f~e~~~~~~~~~~~f--~Q~n~s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~L  107 (174)
T 3ejk_A           30 QIPAEGGPVLHMLRLDSPQFSQF--GEIYFSEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTL  107 (174)
T ss_dssp             EECCTTSCEECCCCTTCTTCCCC--CEEEEEEECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEE
T ss_pred             cEecCCcCEEEEEecCccCCCCe--eEEEEEECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEE
Confidence            4455667766543 333222110  1122334589999999999 899999999999999988743      23356788


Q ss_pred             c---CCCEEEeCCCcEEEEEecCCCcEEEEEEee
Q 018395           85 K---KGDGIALPFGVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        85 ~---~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      .   ....++||+|+.|-+.|.+++++.++...+
T Consensus       108 s~~~n~~~L~IP~G~aHgf~~lsd~~av~ly~~s  141 (174)
T 3ejk_A          108 GRPDNYRLLRIPPQVWYGFAATGDTPALVANCTD  141 (174)
T ss_dssp             ETTTBCEEEEECTTCEEEEEECTTSCEEEEEEES
T ss_pred             CCccCceEEEeCCCcEEEEEEccCCCEEEEEECC
Confidence            7   678999999999999999886677776654

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=97.83  E-value=0.00013  Score=58.58  Aligned_cols=64  Identities=16%  Similarity=0.094  Sum_probs=49.0

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK  103 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~  103 (356)
                      ..+.++.-..+||...- +++..+|++|||+|++++..  .++.  ..++++||+++||+|+.-.|.-.
T Consensus        40 g~~~~GvWe~tPG~~~~-~~~~~~E~~~iLeG~~~lt~--ddG~--~~~l~aGD~~~~P~G~~gtWev~  103 (116)
T 3es4_A           40 NGTIVAVWMAEPGIYNY-AGRDLEETFVVVEGEALYSQ--ADAD--PVKIGPGSIVSIAKGVPSRLEIL  103 (116)
T ss_dssp             SCCEEEEEEECSEEEEE-CCCSEEEEEEEEECCEEEEE--TTCC--CEEECTTEEEEECTTCCEEEEEC
T ss_pred             CCEEEEEEecCCceeEC-eeCCCcEEEEEEEeEEEEEe--CCCe--EEEECCCCEEEECCCCeEEEEEe
Confidence            34677788999997553 33344599999999999974  3343  37999999999999998887653

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=97.83  E-value=7.5e-05  Score=63.53  Aligned_cols=72  Identities=15%  Similarity=0.136  Sum_probs=58.1

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC---CCCeEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD---PDGLAW  298 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~---~~~~~~  298 (356)
                      +..+..+++.||+..++|.|+.  .|..||++|+.+.   +.++     ..+.+||.++.|.|..|...+.   ++++.+
T Consensus        41 g~~v~lvr~~pG~~~p~H~H~g--~ee~~VL~G~~~~---~e~~-----~~~~~Gd~~~~P~g~~H~~~~~~~~~e~~~~  110 (159)
T 3ebr_A           41 GETITLLKAPAGMEMPRHHHTG--TVIVYTVQGSWRY---KEHD-----WVAHAGSVVYETASTRHTPQSAYAEGPDIIT  110 (159)
T ss_dssp             TEEEEEEEECSSCBCCCEEESS--CEEEEEEESCEEE---TTSS-----CCBCTTCEEEECSSEEECEEESSSSSSCEEE
T ss_pred             CeEEEEEEECCCCCcccccCCC--CEEEEEEEeEEEE---eCCC-----eEECCCeEEEECCCCcceeEeCCCCCCCEEE
Confidence            4668899999999999999985  5889999999764   3333     2589999999999999998654   577877


Q ss_pred             EEEEc
Q 018395          299 FSIIT  303 (356)
Q Consensus       299 ~~~~~  303 (356)
                      +.+.+
T Consensus       111 ~~~~~  115 (159)
T 3ebr_A          111 FNIVA  115 (159)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            76543

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=97.83  E-value=0.00018  Score=63.88  Aligned_cols=81  Identities=10%  Similarity=0.037  Sum_probs=66.5

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEc--CCCc----eEEEEEcCCCEEEeCC--CcEEEEEec-CC
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVL--PEKE----EKVVAIKKGDGIALPF--GVVTWWYNK-ED  105 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~--~~~~----~~~~~l~~GDv~~iP~--G~~H~~~N~-g~  105 (356)
                      ..+.+..+...||...++|-|....+++|++|+.+..+..  +++.    .....+.+||++++++  |.+|.+.|. ++
T Consensus        77 ~~~~v~~l~w~PGq~spiHdH~~~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~  156 (208)
T 2gm6_A           77 ERFSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDD  156 (208)
T ss_dssp             SSCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CCEEEEEEEeCCCcccCcccCCcceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCC
Confidence            3678899999999999999995599999999999988764  2221    1247899999999999  999999998 67


Q ss_pred             CcEEEEEEee
Q 018395          106 TELVVLFLGD  115 (356)
Q Consensus       106 e~l~~l~i~~  115 (356)
                      ++.+.|-+..
T Consensus       157 ~~avsLHvY~  166 (208)
T 2gm6_A          157 RVSISIHVYG  166 (208)
T ss_dssp             SCEEEEEEES
T ss_pred             CcEEEEEEEc
Confidence            7777776543

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=97.72  E-value=0.00021  Score=60.16  Aligned_cols=65  Identities=8%  Similarity=-0.163  Sum_probs=53.3

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYN  102 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N  102 (356)
                      .+....+++++||+.+++|+|...|.+|||+|+....-   +.......+++|+.++-|+|..|+..-
T Consensus        44 ~g~~t~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~~---Gd~~~~~~~~aGsYv~ePpGs~H~p~~  108 (153)
T 3bal_A           44 TSSWTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEVRG---GEQEGGSTAYAPSYGFESSGALHGKTF  108 (153)
T ss_dssp             TTEEEEEEEECTTEEECCEEESSCEEEEEEESEEEETT---CGGGTSEEEESSEEEEECTTCEESCCE
T ss_pred             cceEEEEEEeCCCCCccCccCCCCEEEEEEEEEEEecC---ccccCccccCCCeEEEcCCCCccccee
Confidence            56788899999999999999998999999999987632   111113678999999999999998544

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=97.68  E-value=0.011  Score=53.98  Aligned_cols=181  Identities=13%  Similarity=0.045  Sum_probs=111.7

Q ss_pred             EEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCC--cEEEEEecC-CCcEEEEEEe
Q 018395           39 AAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG--VVTWWYNKE-DTELVVLFLG  114 (356)
Q Consensus        39 ~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G--~~H~~~N~g-~e~l~~l~i~  114 (356)
                      +...++.||.-+.+|-| +-+.+.||++|+..-.  +.-|..  ..+++||+-.+-+|  +.|.-.|.. +++++++-+.
T Consensus        66 ln~~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn~--~~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~lQlW  141 (256)
T 2vec_A           66 LNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYR--DSEGNH--VQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLW  141 (256)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEEESEEEEE--ETTSCE--EEEETTEEEEECCCTTCCEEEEECCSSSCEEEEEEE
T ss_pred             ccccccCCCCccCCcCCCCcEEEEEEEeeEEEEE--eCCCCE--EEECCCeEEEEECCCCeEEEEEECCCCceEEEEEEE
Confidence            45678999999999999 5555889999998774  444432  69999999999665  799999964 4678888776


Q ss_pred             eCC--CCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceeec
Q 018395          115 DTS--KGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNC  192 (356)
Q Consensus       115 ~~~--~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~l  192 (356)
                      .+.  ...+| .|+.         + .+|           .         ..-.+|.... +          .       
T Consensus       142 i~l~p~~~~P-~yq~---------~-~~p-----------~---------~~~~lIag~~-G----------~-------  172 (256)
T 2vec_A          142 LDACPQRENP-LIQK---------L-ALN-----------M---------GKQQLIASPE-G----------A-------  172 (256)
T ss_dssp             EECCTTSCCC-SEEE---------E-ECC-----------C---------SSEEEEEESS-C----------G-------
T ss_pred             EeCChhcCCC-CceE---------E-cCC-----------C---------CCEEEEEeCC-C----------C-------
Confidence            542  11222 1111         0 011           0         0001222110 0          0       


Q ss_pred             cCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEE
Q 018395          193 EEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETT  272 (356)
Q Consensus       193 ~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~  272 (356)
                                 .|.+.          ....+.+..+.|++|+-.......+  .-++||++|++.+.  ..++ .  ...
T Consensus       173 -----------~~p~~----------~~~~~~~~~~~L~~g~~~~~~~~~~--~~~l~v~~G~v~v~--g~~~-~--~~~  224 (256)
T 2vec_A          173 -----------MGSLQ----------LRQQVWLHHIVLDKGESANFQLHGP--RAYLQSIHGKFHAL--THHE-E--KAA  224 (256)
T ss_dssp             -----------GGCEE----------CSSSCEEEEEEECTTCEEEEECSSS--EEEEEEEESCEEEE--ETTE-E--EEE
T ss_pred             -----------CCceE----------ccCCcEEEEEEECCCCEEEEecCCC--eEEEEEEECEEEEC--Cccc-c--ceE
Confidence                       01111          0113557778899998876555333  37899999998774  2111 1  246


Q ss_pred             ecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          273 VKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       273 l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      |.+||..++-.+-...+.+ .++++++.+
T Consensus       225 l~~gd~~~l~~~~~l~l~a-~~~a~~LL~  252 (256)
T 2vec_A          225 LTCGDGAFIRDEANITLVA-DSPLRALLI  252 (256)
T ss_dssp             ECTTCEEEEESCSEEEEEE-SSSEEEEEE
T ss_pred             ECCCCEEEECCCCeEEEEe-CCCCEEEEE
Confidence            9999999997765544445 356666654

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=97.68  E-value=0.0011  Score=55.05  Aligned_cols=99  Identities=13%  Similarity=-0.022  Sum_probs=67.9

Q ss_pred             eeeCCCeEEEEeCC-CCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCC-CE
Q 018395           13 VYGGNGGSYHAWCP-NELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKG-DG   89 (356)
Q Consensus        13 ~~~~~~G~i~~~~~-~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~G-Dv   89 (356)
                      .+..+.|.+..... .+.|- .-. --......+||..+.+|.| ...++++|++|+..+.+-+ +....+..|.+. ..
T Consensus        12 ~i~D~RG~L~~~e~~~~ipf-~ik-Rvy~~~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldD-g~~~~~~~L~~~~~g   88 (141)
T 2pa7_A           12 KIIDSRGSLVAIEENKNIPF-SIK-RVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDD-GNIIQEITLDSPAVG   88 (141)
T ss_dssp             EEEETTEEEEEEETTTTSSS-CCC-EEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEEC-SSCEEEEEECCTTEE
T ss_pred             cEecCCCcEEEEeccCCCCC-Ccc-EEEEEEecCCCCEECcCcCCCceEEEEEEccEEEEEEEC-CcEEEEEEECCCCcE
Confidence            44456788877655 33332 212 2223334569999999999 9999999999999998743 333345677554 45


Q ss_pred             EEeCCCcEEEEEecCCCcEEEEEEee
Q 018395           90 IALPFGVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        90 ~~iP~G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      ++||+|..|.+.+-++. .+++.+.+
T Consensus        89 L~IppgvWh~~~~~s~~-avllvlas  113 (141)
T 2pa7_A           89 LYVGPAVWHEMHDFSSD-CVMMVLAS  113 (141)
T ss_dssp             EEECTTCEEEEECCCTT-CEEEEEES
T ss_pred             EEeCCCEEEEEEEcCCC-eEEEEECC
Confidence            99999999999998765 55554443

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=97.66  E-value=0.00052  Score=58.96  Aligned_cols=84  Identities=8%  Similarity=0.089  Sum_probs=67.7

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCce---EEEEEecCCcEEEEcCCcEEEE-eeCCCCeE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKR---VLETTVKAGNLFIVPRFYVVSK-IADPDGLA  297 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~---~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~  297 (356)
                      ++++..+...||.-..+|=|.+ ++.+++|++|+.+.++....+.+   .-...+.+||++++|.+.+|.+ |.+++.+.
T Consensus        68 ~~~v~~l~W~PGq~S~iHdH~~-s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~~~aV  146 (171)
T 3eqe_A           68 ELEIIVINIPPNKETTVHDHGQ-SIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTSERMV  146 (171)
T ss_dssp             SCEEEEEEECTTCBCCEECCTT-CEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSSSCEE
T ss_pred             CeEEEEEEECCCCCcccccCCC-ceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCCCCEE
Confidence            3668888999999999999998 89999999999999887643321   1235899999999999999999 55777787


Q ss_pred             EEEEEcCCC
Q 018395          298 WFSIITTPN  306 (356)
Q Consensus       298 ~~~~~~~~~  306 (356)
                      -|-++....
T Consensus       147 SlHvY~pp~  155 (171)
T 3eqe_A          147 SLHVYSPPL  155 (171)
T ss_dssp             EEEEEESCC
T ss_pred             EEEEeCCCc
Confidence            777765443

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=97.63  E-value=0.00019  Score=61.26  Aligned_cols=59  Identities=15%  Similarity=0.161  Sum_probs=47.7

Q ss_pred             cCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP  293 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~  293 (356)
                      .||+-.--|.|+  ..|+.||++|+..+.+.+. |+ .-+..|++||+|++|+|.+|.-.+..
T Consensus        43 Gpn~r~d~H~h~--~dE~FyvlkG~m~i~v~d~-g~-~~~v~l~eGE~f~lP~gvpH~P~r~~  101 (174)
T 1yfu_A           43 GPNHRTDYHDDP--LEEFFYQLRGNAYLNLWVD-GR-RERADLKEGDIFLLPPHVRHSPQRPE  101 (174)
T ss_dssp             SCBCCCCEEECS--SCEEEEEEESCEEEEEEET-TE-EEEEEECTTCEEEECTTCCEEEEBCC
T ss_pred             CCCcCccCcCCC--CceEEEEEeeEEEEEEEcC-Cc-eeeEEECCCCEEEeCCCCCcCccccC
Confidence            566667778774  7899999999999999984 32 23568999999999999999976543

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=97.59  E-value=0.00033  Score=59.75  Aligned_cols=60  Identities=12%  Similarity=0.175  Sum_probs=45.2

Q ss_pred             cCCCeecccccccCCeeEEEEEeceEEEEEEccC--CceEEEEEecCCcEEEEcCCcEEEEeeC
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPD--GKRVLETTVKAGNLFIVPRFYVVSKIAD  292 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~--g~~~~~~~l~~Gdv~vvP~g~~h~~~~~  292 (356)
                      .||.-.-=|.|  ...|+.|+++|+..+.+.+..  +.+.-+-.|++||+|++|+|.+|.-.+.
T Consensus        42 GPn~r~D~H~~--~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~  103 (176)
T 1zvf_A           42 GPNERTDYHIN--PTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRF  103 (176)
T ss_dssp             SSBCCSCEEEC--SSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEEC
T ss_pred             CCCcCCcCcCC--CCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCCccc
Confidence            44554544543  378999999999999999832  0223356899999999999999997554

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=97.56  E-value=0.044  Score=49.51  Aligned_cols=206  Identities=14%  Similarity=0.060  Sum_probs=121.3

Q ss_pred             eeCCCeEEEEeCCCCC-----CCcc--cCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEc
Q 018395           14 YGGNGGSYHAWCPNEL-----PMLR--QGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIK   85 (356)
Q Consensus        14 ~~~~~G~i~~~~~~~~-----p~l~--~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~   85 (356)
                      -..++|++.......|     |.+.  +.-..+..-.+.||.-+.+|-| +-+.+.||++|+..-.  +.-|..  ..++
T Consensus        11 g~~~~~~l~~~~~fsf~~~~dP~~~~fg~l~v~n~d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~--DS~Gn~--~~i~   86 (242)
T 1tq5_A           11 GHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ--DSMGNK--EQVP   86 (242)
T ss_dssp             EEEECSSEEEEESSCBTTBCCSSCSCBTTEEEEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEE--ESSSCE--EEEE
T ss_pred             CCccCCCEEEEEecccccccChhHhcCCceEeeccceeCCCCcCCCcCCCCcEEEEEEEEeEEEEE--eCCCCc--EEEC
Confidence            4456666665443333     2221  1122345678999988999999 6666999999998774  444432  6999


Q ss_pred             CCCEEEeCCC--cEEEEEecC-CCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcc
Q 018395           86 KGDGIALPFG--VVTWWYNKE-DTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGK  162 (356)
Q Consensus        86 ~GDv~~iP~G--~~H~~~N~g-~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~  162 (356)
                      +|||-.+-||  +.|.-.|.. +++++++-+..... . .+ ...-|-    . + .+|.           .        
T Consensus        87 ~GdvQ~MtAG~GI~HsE~~~~~~~~l~~lQlWv~P~-~-k~-~~P~y~----~-~-~~p~-----------~--------  138 (242)
T 1tq5_A           87 AGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWIMPE-E-NG-ITPRYE----Q-R-RFDA-----------V--------  138 (242)
T ss_dssp             TTCEEEEECTTCEEEEEECCCSSCCEEEEEEEECCS-S-CS-CCCEEE----E-E-CCCC-----------C--------
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCCeEEEEEEEEcch-h-cC-CCCcce----e-e-cCCc-----------h--------
Confidence            9999999655  899999964 46788887766421 1 11 011110    0 1 0221           0        


Q ss_pred             cCCceEEEcCCCCcCCCCCcccCCCceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccc
Q 018395          163 QTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSC  242 (356)
Q Consensus       163 q~~~~iv~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~  242 (356)
                      .+..+|.... +.                            .|.+.          ....+.+..+.|++|+-...-..+
T Consensus       139 ~~g~~iag~~-g~----------------------------~~p~~----------~~~~~~~~~~~l~~g~~~~~~~~~  179 (242)
T 1tq5_A          139 QGKQLVLSPD-AR----------------------------DGSLK----------VHQDMELYRWALLKDEQSVHQIAA  179 (242)
T ss_dssp             SSEEEEEESS-CG----------------------------GGCEE----------CSSSCEEEEEEECTTCEEEECCCT
T ss_pred             hCCEEEEecC-CC----------------------------CCcEe----------ccCCCEEEEEEECCCCEEEeecCC
Confidence            0001232110 00                            00111          011355777888998877544434


Q ss_pred             cCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          243 DSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       243 ~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      . -.-++||++|++.+     +|     ..|.+||..++..+-...+.+ .++++++.+-
T Consensus       180 ~-~~~~~~v~~G~v~v-----~g-----~~l~~gd~~~~~~~~~l~l~a-~~~a~~Ll~~  227 (242)
T 1tq5_A          180 E-RRVWIQVVKGNVTI-----NG-----VKASTSDGLAIWDEQAISIHA-DSDSEVLLFD  227 (242)
T ss_dssp             T-CEEEEEEEESEEEE-----TT-----EEEETTCEEEEESCSCEEEEE-SSSEEEEEEE
T ss_pred             C-cEEEEEEccCcEEE-----CC-----EEeCCCCEEEECCCCeEEEEe-CCCCEEEEEE
Confidence            3 44689999999877     23     258899999998765444445 3566666654

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=97.54  E-value=0.001  Score=58.57  Aligned_cols=78  Identities=15%  Similarity=0.009  Sum_probs=63.7

Q ss_pred             ceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcC--CC-----ceEEEEEcCCCEEEe-CCCcEEEEEecC-C
Q 018395           36 NIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLP--EK-----EEKVVAIKKGDGIAL-PFGVVTWWYNKE-D  105 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~--~~-----~~~~~~l~~GDv~~i-P~G~~H~~~N~g-~  105 (356)
                      .+++..+...||...++|=| .+..+++|++|+.+..+..-  ++     ......+++||+.++ |++..|.+.|.+ +
T Consensus        69 ~~~l~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~~  148 (200)
T 3eln_A           69 KFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  148 (200)
T ss_dssp             TCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             ceEEEEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCCC
Confidence            57889999999999999999 68999999999999987652  11     123578999999999 888899999988 6


Q ss_pred             CcEEEEEE
Q 018395          106 TELVVLFL  113 (356)
Q Consensus       106 e~l~~l~i  113 (356)
                      ++.+-|=+
T Consensus       149 ~~avSlHv  156 (200)
T 3eln_A          149 EPAVSLHL  156 (200)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEEEe
Confidence            66544443

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=97.53  E-value=0.00025  Score=60.64  Aligned_cols=72  Identities=10%  Similarity=-0.030  Sum_probs=55.9

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC--C-CeEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP--D-GLAW  298 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~--~-~~~~  298 (356)
                      +..+..+++.||+..++|+|+.  .|..||++|+.+.+   ..+.    ..+++||.++.|.|..|...+..  + ++..
T Consensus        42 g~~v~lvr~~pG~~~p~H~H~g--~ee~~VL~G~f~~~---~~~~----~~~~aGd~~~~P~g~~H~~~a~~~~~~gci~  112 (165)
T 3cjx_A           42 GLMVMRASFAPGLTLPLHFHTG--TVHMYTISGCWYYT---EYPG----QKQTAGCYLYEPGGSIHQFNTPRDNEGQTEV  112 (165)
T ss_dssp             TEEEEEEEECTTCBCCEEEESS--CEEEEEEESEEEET---TCTT----SCEETTEEEEECTTCEECEECCTTCSSCEEE
T ss_pred             CcEEEEEEECCCCcCCcccCCC--CEEEEEEEEEEEEC---CCce----EEECCCeEEEeCCCCceeeEeCCCCCCCcEE
Confidence            4568899999999999999985  68999999998763   2211    24789999999999999986632  3 6755


Q ss_pred             EEEE
Q 018395          299 FSII  302 (356)
Q Consensus       299 ~~~~  302 (356)
                      +.+.
T Consensus       113 l~v~  116 (165)
T 3cjx_A          113 IFML  116 (165)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=97.43  E-value=0.0023  Score=53.14  Aligned_cols=96  Identities=15%  Similarity=0.073  Sum_probs=66.4

Q ss_pred             CCCcEEEEeCC-CCCCCccccCceeEEE-EecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCC-cE
Q 018395          202 KNGGRVVLLNT-KNLPLVGEVGCGADLV-RLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAG-NL  278 (356)
Q Consensus       202 ~~gG~~~~~~~-~~~p~l~~l~~s~~~v-~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~G-dv  278 (356)
                      ...|.++.+.. ++.|.-  . -.++.+ ...||..+.+|.|.. .+++++|++|+..+.+-+....+  ...|.+. ..
T Consensus        15 D~RG~L~~~e~~~~ipf~--i-kRvy~~~~~~~g~~RG~H~Hk~-~~q~li~l~Gs~~v~ldDg~~~~--~~~L~~~~~g   88 (141)
T 2pa7_A           15 DSRGSLVAIEENKNIPFS--I-KRVYYIFDTKGEEPRGFHAHKK-LEQVLVCLNGSCRVILDDGNIIQ--EITLDSPAVG   88 (141)
T ss_dssp             ETTEEEEEEETTTTSSSC--C-CEEEEEESCCSSCCEEEEEESS-CCEEEEEEESCEEEEEECSSCEE--EEEECCTTEE
T ss_pred             cCCCcEEEEeccCCCCCC--c-cEEEEEEecCCCCEECcCcCCC-ceEEEEEEccEEEEEEECCcEEE--EEEECCCCcE
Confidence            44788887776 444431  1 112323 245899999999999 99999999999999995533222  3345544 45


Q ss_pred             EEEcCCcEEEEeeCCCCeEEEEEEc
Q 018395          279 FIVPRFYVVSKIADPDGLAWFSIIT  303 (356)
Q Consensus       279 ~vvP~g~~h~~~~~~~~~~~~~~~~  303 (356)
                      +.||+|.+|.+.+-++++.++.+.+
T Consensus        89 L~IppgvWh~~~~~s~~avllvlas  113 (141)
T 2pa7_A           89 LYVGPAVWHEMHDFSSDCVMMVLAS  113 (141)
T ss_dssp             EEECTTCEEEEECCCTTCEEEEEES
T ss_pred             EEeCCCEEEEEEEcCCCeEEEEECC
Confidence            8999999999977655677776653

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=97.39  E-value=0.00027  Score=59.53  Aligned_cols=75  Identities=8%  Similarity=0.022  Sum_probs=57.0

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      |--..++++.||+.+++|+|+.  .|-+||++|+...+    .|...-+..+.+|+.++-|+|..|+....++..+++.+
T Consensus        45 g~~t~lvr~~pG~~~p~H~H~g--~ee~~VL~G~~~~~----~Gd~~~~~~~~aGsYv~ePpGs~H~p~~~~~~~~~~~~  118 (153)
T 3bal_A           45 SSWTAIFNCPAGSSFASHIHAG--PGEYFLTKGKMEVR----GGEQEGGSTAYAPSYGFESSGALHGKTFFPVESQFYMT  118 (153)
T ss_dssp             TEEEEEEEECTTEEECCEEESS--CEEEEEEESEEEET----TCGGGTSEEEESSEEEEECTTCEESCCEESSCEEEEEE
T ss_pred             ceEEEEEEeCCCCCccCccCCC--CEEEEEEEEEEEec----CccccCccccCCCeEEEcCCCCcccceeCCCCeEEEEE
Confidence            5668889999999999999995  68899999998664    33210034678999999999999986554555555544


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       119 ~  119 (153)
T 3bal_A          119 F  119 (153)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=97.37  E-value=0.018  Score=52.71  Aligned_cols=209  Identities=11%  Similarity=0.036  Sum_probs=117.4

Q ss_pred             CCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEE--cC--------
Q 018395           17 NGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAI--KK--------   86 (356)
Q Consensus        17 ~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l--~~--------   86 (356)
                      ..|.+...++... .  ..-+++..++|++|.......-+.+-.++.+.|++++.+   ++.  ++.+  .+        
T Consensus        12 ~~g~~~~itp~~a-~--~~y~~f~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~~---~g~--~~~~~g~R~svF~~~~   83 (270)
T 2qjv_A           12 ESGNIQHISPQNA-G--WEYVGFDVWQLXAGESITLPSDERERCLVLVAGLASVXA---ADS--FFYRIGQRMSPFERIP   83 (270)
T ss_dssp             SSEEEEEECHHHH-T--SSSCEEEEEEECTTCEEEECCSSEEEEEEEEESCEEEEE---TTE--EEEEECCCSSGGGCSC
T ss_pred             CCCCEEEeCCCCC-C--cEEeEEEEEEecCCCEEEecCCCcEEEEEEecceEEEEE---CCE--EEeccccccccccCCC
Confidence            5566666664221 1  233778999999999665554455556667899999987   332  3444  23        


Q ss_pred             CCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCc
Q 018395           87 GDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGK  166 (356)
Q Consensus        87 GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~  166 (356)
                      .|++|+|.|....+...+  +++|......+    .+.+...++                     +.+++         .
T Consensus        84 p~~lYvp~g~~v~i~a~~--~~~~~v~sAp~----~~~~p~r~i---------------------~~~d~---------~  127 (270)
T 2qjv_A           84 AYSVYLPHHTEAXVTAET--DLELAVCSAPG----FGELPVRLI---------------------SPQEV---------G  127 (270)
T ss_dssp             CCEEEECSSCCEEEEESS--SEEEEEEEEEC----CSCCCCEEE---------------------CGGGS---------E
T ss_pred             CcEEEECCCCEEEEEecC--CceEEEEeeec----CCcCCcEEE---------------------CHHHC---------C
Confidence            599999999977776655  35555443332    112222111                     11110         0


Q ss_pred             eEEEcCCCCcCCCCCcccCCCceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCee---ccccccc
Q 018395          167 GIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMC---SPGFSCD  243 (356)
Q Consensus       167 ~iv~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~---~PH~h~~  243 (356)
                      ...+-+.          ..++..+++...                  +.|.-   .|-+..+ |+|||..   +||.|.+
T Consensus       128 ~~~rG~g----------~n~R~V~~i~~~------------------~~~a~---~LlvgEv-~tpgG~WSSyPpHkHd~  175 (270)
T 2qjv_A          128 VEHRGXG----------RNQRLVHNILPD------------------SQLAD---SLLVVEV-YTNAGATSSWPAHXHDT  175 (270)
T ss_dssp             EEEESSG----------GGCEEEEEEECT------------------TSCCS---SCEEEEE-EECTTCEESCSCEECEE
T ss_pred             eEeccCc----------cchhhhhhhcCC------------------CCCcc---eEEEEEE-EcCCCccccCCCccccc
Confidence            1111110          012234444421                  12221   2556666 8899888   9999987


Q ss_pred             CC--e------eEEEE-Ee---ceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCC-CeEEEEEEc
Q 018395          244 SA--L------QVTYI-VR---GSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPD-GLAWFSIIT  303 (356)
Q Consensus       244 ~A--~------ei~~v-~~---G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~-~~~~~~~~~  303 (356)
                       .  .      |+-|. +.   |-+.=-|.+++|.---...++-||++.+|.|+ |-..+... .+=++-+..
T Consensus       176 -~~~~~e~~lEE~YYf~~~~~~gf~~q~vyt~d~~~de~~~V~~~d~VlvP~Gy-Hp~~a~pGy~~YylwvMa  246 (270)
T 2qjv_A          176 -AVEGQETYLEETYYHRFNPPQGFCLQRVYTDDRSLDECMAVYNRDVVXVPXGY-HPVATIAGYDNYYLNVMA  246 (270)
T ss_dssp             -EETTTEEECEEEEEEEEESTTCEEEEEEECTTSSSEEEEEEETTCEEEESSSB-CCEEECTTCEEEEEEEEE
T ss_pred             -ccCcccccceeEEEEECCCCCCEEEEEEeCCCCCCceEEEEECCCEEecCCCc-CCCcCCCCcccEEEEEEE
Confidence             5  3      88765 33   45544444444421113579999999999999 98755322 222554443

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.36  E-value=0.0013  Score=59.41  Aligned_cols=64  Identities=9%  Similarity=0.157  Sum_probs=51.0

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK  103 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~  103 (356)
                      ..++......+||... +.+++.+|++|||+|++++..  .++.  ..++++||+++||+|+.-.|.-.
T Consensus       165 g~~~~GiW~~tpG~~~-~~~~~~~E~~~ILeG~v~lt~--~~G~--~~~~~aGD~~~~P~G~~~tWev~  228 (238)
T 3myx_A          165 STLRIGVWDSTPYERI-SRPHKIHELMNLIEGRVVLSL--ENGS--SLTVNTGDTVFVAQGAPCKWTST  228 (238)
T ss_dssp             SSCEEEEEEECCEEBC-CEECSSCEEEEEEECCEEEEE--TTSC--EEEECTTCEEEECTTCEEEEEES
T ss_pred             CCEEEeEEEeCCCEEE-CCcCCCCEEEEEEEeEEEEEe--CCCC--EEEECCCCEEEECCCCEEEEEEC
Confidence            4678899999999833 333478899999999999863  3443  37999999999999998877654

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=97.35  E-value=0.0042  Score=53.37  Aligned_cols=72  Identities=13%  Similarity=-0.043  Sum_probs=57.8

Q ss_pred             ecCCCeecccccccCCeeEEEEEeceEEEEEEccCCc-----eEEEEEec---CCcEEEEcCCcEEEEeeCCC-CeEEEE
Q 018395          230 LDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK-----RVLETTVK---AGNLFIVPRFYVVSKIADPD-GLAWFS  300 (356)
Q Consensus       230 l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~---~Gdv~vvP~g~~h~~~~~~~-~~~~~~  300 (356)
                      -.+|.++..|+|.. -.++++|++|++..-++|-...     +.....|.   ....++||+|++|-..+-++ +++++.
T Consensus        60 s~~GvlRG~H~h~~-q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~ly  138 (174)
T 3ejk_A           60 VLPRRVKAWKRHSL-MTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVAN  138 (174)
T ss_dssp             ECBTCEEEEEEESS-CCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEEE
T ss_pred             CCCCCEECcEecCC-CceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEEEE
Confidence            47899999999987 8899999999999999986531     23455777   67899999999999977544 677666


Q ss_pred             EE
Q 018395          301 II  302 (356)
Q Consensus       301 ~~  302 (356)
                      ..
T Consensus       139 ~~  140 (174)
T 3ejk_A          139 CT  140 (174)
T ss_dssp             EE
T ss_pred             EC
Confidence            54

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=97.32  E-value=0.0012  Score=56.74  Aligned_cols=79  Identities=13%  Similarity=0.035  Sum_probs=58.2

Q ss_pred             ceeEEEEecCCCeeccccccc-----CCeeEEEEEeceEEEEEEccCCce----------------E-EEEEecCCcEEE
Q 018395          223 CGADLVRLDGKAMCSPGFSCD-----SALQVTYIVRGSGRAQIVGPDGKR----------------V-LETTVKAGNLFI  280 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~-----~A~ei~~v~~G~~~~~iv~~~g~~----------------~-~~~~l~~Gdv~v  280 (356)
                      -....+.|.||.+.+.|+|+.     +-.|=.+|..|.+++.+  .....                + -.-.|++||.+.
T Consensus        53 Y~~K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~--~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvt  130 (175)
T 2y0o_A           53 YCSKELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYV--EGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYT  130 (175)
T ss_dssp             EEEEEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEE--SSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEE
T ss_pred             ceEEEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEE--CCccccCcceeccCCceeeecCCcEEEECCCCEEE
Confidence            446778999999999999984     02466779999987766  22110                0 012799999999


Q ss_pred             EcCCcEEEEeeCCCCeEEEEEEc
Q 018395          281 VPRFYVVSKIADPDGLAWFSIIT  303 (356)
Q Consensus       281 vP~g~~h~~~~~~~~~~~~~~~~  303 (356)
                      +|+|.+|+..|+.+++.+..+.+
T Consensus       131 Ippg~~H~f~ageegvli~EvSt  153 (175)
T 2y0o_A          131 IPPNTKHWFQAGEEGAVVTEMSS  153 (175)
T ss_dssp             ECTTCCEEEEEEEEEEEEEEEEE
T ss_pred             ECCCCcEEEEeCCCCEEEEEEeC
Confidence            99999999988766766666643

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=97.31  E-value=0.001  Score=55.27  Aligned_cols=58  Identities=17%  Similarity=0.201  Sum_probs=45.1

Q ss_pred             ecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC--CCeEEEEE
Q 018395          236 CSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP--DGLAWFSI  301 (356)
Q Consensus       236 ~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~--~~~~~~~~  301 (356)
                      ..||.|.  ..++.||++|++.+.+   ++ +  ...+++||++++|+|.+|...+..  ++.++..+
T Consensus        31 ~~p~~h~--~~~i~~v~~G~~~~~i---~~-~--~~~l~~Gd~~~i~p~~~H~~~~~~~~~~~~~~~i   90 (164)
T 2arc_A           31 DRPLGMK--GYILNLTIRGQGVVKN---QG-R--EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWV   90 (164)
T ss_dssp             EETTCCS--SEEEEEEEEECEEEEE---TT-E--EEEECTTCEEEECTTCCEEEEECTTSSEEEEEEE
T ss_pred             ccccCCC--ceEEEEEEEeEEEEEE---CC-E--EEEecCCeEEEEcCCCCEEEEeCCCCCcEEEEEE
Confidence            4589985  6899999999999987   22 2  357999999999999999975533  45665554

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=97.29  E-value=0.001  Score=59.60  Aligned_cols=68  Identities=13%  Similarity=0.058  Sum_probs=55.3

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      +..+..+++.||+..++|+|+.  .|..||++|+..    +..      ..+.+||.++.|.|..|.-.+ .+++.++..
T Consensus        42 g~~~~lvr~~pG~~~p~H~H~g--~Ee~~VL~G~f~----d~~------~~~~~Gd~~~~P~g~~H~p~a-~~gc~~~vk  108 (223)
T 3o14_A           42 ARATSIVRYAPGSRFSAHTHDG--GEEFIVLDGVFQ----DEH------GDYPAGTYVRNPPTTSHVPGS-AEGCTIFVK  108 (223)
T ss_dssp             CEEEEEEEECTTEECCCEECTT--CEEEEEEEEEEE----ETT------EEEETTEEEEECTTCEECCEE-SSCEEEEEE
T ss_pred             ccEEEEEEECCCCCcccccCCC--CEEEEEEEeEEE----ECC------eEECCCeEEEeCCCCccccEe-CCCCEEEEE
Confidence            3457889999999999999974  699999999964    332      368899999999999998776 667776665


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       109 ~  109 (223)
T 3o14_A          109 L  109 (223)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=97.17  E-value=0.0015  Score=59.68  Aligned_cols=77  Identities=12%  Similarity=0.031  Sum_probs=55.3

Q ss_pred             CceEEEEEEecCCCc--ccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec--CCCcEEE
Q 018395           35 GNIGAAKLALEKNGF--ALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK--EDTELVV  110 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~--~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~--g~e~l~~  110 (356)
                      .++-+....+.....  ..+|||+.-|++||++|++. .+ +..+. ..+.+++||++++|+|..|.+...  ++++...
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~G~~~-~i-~~~~~-~~~~l~~g~l~~i~p~~~h~~~~~~~~~~~~~~   81 (276)
T 3gbg_A            5 KSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAK-LI-DKNCL-VSYEINSSSIILLKKNSIQRFSLTSLSDENINV   81 (276)
T ss_dssp             TTEEEEEEEECTTCEEEEEEEECSSCEEEEESSSCEE-EE-ETTTT-EEEEECTTEEEEECTTCEEEEEEEECCSSCEEE
T ss_pred             hhhhhhhhhhhcccchhccHhhhcceEEEEEecCceE-EE-CCccc-eeEEEcCCCEEEEcCCCceeeccccCCCcceEE
Confidence            345556666666554  37899999999999999999 65 32211 148999999999999999998765  3344555


Q ss_pred             EEEe
Q 018395          111 LFLG  114 (356)
Q Consensus       111 l~i~  114 (356)
                      +.+.
T Consensus        82 ~~i~   85 (276)
T 3gbg_A           82 SVIT   85 (276)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=97.14  E-value=0.15  Score=46.81  Aligned_cols=69  Identities=19%  Similarity=0.037  Sum_probs=55.5

Q ss_pred             EecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCC--cEEEEEecCCCcEEEEEEee
Q 018395           43 ALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG--VVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        43 ~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G--~~H~~~N~g~e~l~~l~i~~  115 (356)
                      ...|+.-+.+|-| +-+-+-||++|+..-.  +.-|.  ...+++||+-.+-+|  +.|.-.|..+++++.+-+..
T Consensus        45 ~~~~~~gf~~HPHrg~EtVTyvl~G~~~H~--DS~Gn--~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQlWv  116 (277)
T 2p17_A           45 DIFERGTFDVHPHRGIETVTYVISGELEHF--DSKAG--HSTLGPGDVQWMTAGRGVVHKEDPASGSTVHSLQLWV  116 (277)
T ss_dssp             EEECTTCCCCEEECSEEEEEEEEESCEEEE--ETTTE--EEEECTTCEEEEECTTCEEEEEEECTTCCEEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCcEEEEEEEEeEEEEe--eCCCC--ceEECCCeEEEEeCCCCEEEEeecCCCCCEEEEEEEe
Confidence            6688888999999 5566999999998774  55443  378999999999987  78999998777788777665

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=97.13  E-value=0.013  Score=49.86  Aligned_cols=131  Identities=18%  Similarity=0.253  Sum_probs=82.7

Q ss_pred             CCCcEEEEeCCCCCCC--ccccCceeEEEEecCCCeecccccccCCeeEEEEEeceE-EEEEEccCCceE---EEEEecC
Q 018395          202 KNGGRVVLLNTKNLPL--VGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSG-RAQIVGPDGKRV---LETTVKA  275 (356)
Q Consensus       202 ~~gG~~~~~~~~~~p~--l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~-~~~iv~~~g~~~---~~~~l~~  275 (356)
                      +.||+.++..... |.  -..-..+....-|.+|...  |||...+.|+-|...|.. ++.++.++|...   +-.++.+
T Consensus        27 PEGG~yret~rs~-~~~~~~R~~~T~IYfLL~~g~~S--~~HRv~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~  103 (170)
T 1yud_A           27 VEGGFYRSSYRSE-TAFDPSRQLWSSIYFLLRTGEVS--HFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAA  103 (170)
T ss_dssp             TTSSEEEEEEECS-SBSSSSSBSCEEEEEEEETTCCE--EEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTT
T ss_pred             CCCceEEEeecCC-CCCCCCCccceEEEEEECCCCCC--eeEEcCCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCccc
Confidence            4577777666543 11  1122356777789999865  555544899999999985 999999988531   1115788


Q ss_pred             CcE--EEEcCCcEEEEeeCCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHHHHHH
Q 018395          276 GNL--FIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFR  342 (356)
Q Consensus       276 Gdv--~vvP~g~~h~~~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~~~l~  342 (356)
                      |++  ++||+|.+........+..+++..-+  |++.+-     =+.-.+.+-|.+.|---++.+++|.
T Consensus       104 Ge~pQ~vVP~G~wqaa~~~~g~~~LV~C~Va--PGF~f~-----dfel~~~~~L~~~~P~~~~~I~~lt  165 (170)
T 1yud_A          104 GERPQFLVPKGCIFGSAMNQDGFSLVGCMVS--PGFTFD-----DFELFSQEALLAMYPQHKAVVQKLS  165 (170)
T ss_dssp             TEESCEEECTTCEEEEEESSSSEEEEEEEES--SCCCGG-----GCCBCBHHHHHHSCCTTHHHHTTSC
T ss_pred             CceeEEEECCCCEEEEEECCCCcEEEEEEEC--CCccCC-----ceEEcCHHHHHhHCchhHHHHHHhh
Confidence            999  99999999998443224444433323  233221     0122356777777766667776664

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=97.11  E-value=0.0014  Score=59.94  Aligned_cols=66  Identities=14%  Similarity=0.164  Sum_probs=48.3

Q ss_pred             cCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .|+.-.-=| |.. ..|+.|+++|..++.+.+. |. .-+-.|++||+|++|+|.+|.=.+. +++..+.+
T Consensus        39 GpN~R~d~H-~~~-~dE~FyqlkG~m~l~~~d~-g~-~~~V~i~eGemfllP~gv~HsP~r~-~et~gLvi  104 (286)
T 2qnk_A           39 GPNTRKDYH-IEE-GEEVFYQLEGDMVLRVLEQ-GK-HRDVVIRQGEIFLLPARVPHSPQRF-ANTVGLVV  104 (286)
T ss_dssp             SCBCCCCEE-ECS-SCEEEEEEESCEEEEEEET-TE-EEEEEECTTEEEEECTTCCEEEEEC-TTCEEEEE
T ss_pred             CCCcCccCc-CCC-CCeEEEEEeCeEEEEEEeC-Cc-eeeEEECCCeEEEeCCCCCcCCccc-CCeEEEEE
Confidence            344334445 555 8999999999999999984 42 2245899999999999999997663 34444444

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=97.08  E-value=0.0049  Score=54.50  Aligned_cols=79  Identities=14%  Similarity=-0.011  Sum_probs=63.3

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEc--cCCceEE---EEEecCCcEEEEcC--CcEEEE-ee-CC
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG--PDGKRVL---ETTVKAGNLFIVPR--FYVVSK-IA-DP  293 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~--~~g~~~~---~~~l~~Gdv~vvP~--g~~h~~-~~-~~  293 (356)
                      +.+..+...||.-.++|-|..  +.+++|++|+.+.++..  .+|..+-   ...+.+||+++++.  |.+|.+ |+ ++
T Consensus        79 ~~v~~l~w~PGq~spiHdH~~--~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~  156 (208)
T 2gm6_A           79 FSIVSFVWGPGQRTPIHDHTV--WGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDD  156 (208)
T ss_dssp             CEEEEEEECTTCBCCSBCCSS--CEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             EEEEEEEeCCCcccCcccCCc--ceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCC
Confidence            668888999999999999974  79999999999999865  3342210   35899999999999  999999 56 46


Q ss_pred             CCeEEEEEEc
Q 018395          294 DGLAWFSIIT  303 (356)
Q Consensus       294 ~~~~~~~~~~  303 (356)
                      +.+..|-++.
T Consensus       157 ~~avsLHvY~  166 (208)
T 2gm6_A          157 RVSISIHVYG  166 (208)
T ss_dssp             SCEEEEEEES
T ss_pred             CcEEEEEEEc
Confidence            6777776663

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=96.98  E-value=0.0049  Score=54.60  Aligned_cols=79  Identities=11%  Similarity=0.011  Sum_probs=63.6

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcC--CCc----eEEEEEcCCCEEEeCCC--cEEEEEec-CC
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLP--EKE----EKVVAIKKGDGIALPFG--VVTWWYNK-ED  105 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~--~~~----~~~~~l~~GDv~~iP~G--~~H~~~N~-g~  105 (356)
                      ..+++..+...||...++|=|.+..++.|++|+.+..+...  ++.    .....+.+||+.++.++  .+|.+.|. ++
T Consensus        71 ~~f~v~~l~W~PGq~spiHDH~swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d  150 (211)
T 3uss_A           71 QRFSVVSFVWGPGQITPVHDHRVWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSD  150 (211)
T ss_dssp             SSCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             CCEEEEEEEECCCCcCCCCCCCeeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCEEEEccCCCC
Confidence            36788999999999999999988999999999998877542  222    11368999999999987  89999997 46


Q ss_pred             CcEEEEEE
Q 018395          106 TELVVLFL  113 (356)
Q Consensus       106 e~l~~l~i  113 (356)
                      ++.+-|=+
T Consensus       151 ~~avSLHv  158 (211)
T 3uss_A          151 RTSISIHV  158 (211)
T ss_dssp             SCEEEEEE
T ss_pred             CCEEEEEE
Confidence            66554444

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=96.96  E-value=0.005  Score=58.60  Aligned_cols=73  Identities=16%  Similarity=0.215  Sum_probs=55.7

Q ss_pred             EEecC-CCcccCeeeCCCEEEEEEeCeEEEEEE-cCCC---------------------------------ceEEEEEcC
Q 018395           42 LALEK-NGFALPHYCDSARVAYVLQGSGVAGIV-LPEK---------------------------------EEKVVAIKK   86 (356)
Q Consensus        42 ~~l~P-g~~~~pH~h~a~e~~yVl~G~~~~~vv-~~~~---------------------------------~~~~~~l~~   86 (356)
                      +-+.| |+...+||-..+-++..+.|+=++.+. .|..                                 ......|++
T Consensus       145 ~~~gp~g~~~~~H~D~~dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~p  224 (342)
T 1vrb_A          145 VYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTP  224 (342)
T ss_dssp             EEEECSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECT
T ss_pred             EEEeCCCCCCCCeECChhcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEECC
Confidence            55666 888899998777888899999999888 4331                                 124579999


Q ss_pred             CCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           87 GDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        87 GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      ||++|+|+|+.|+..+.+++...-+++.
T Consensus       225 GD~LyiP~gwwH~v~s~~~~~slsvsi~  252 (342)
T 1vrb_A          225 GTMLYLPRGLWHSTKSDQATLALNITFG  252 (342)
T ss_dssp             TCEEEECTTCEEEEECSSCEEEEEEEEC
T ss_pred             CcEEEeCCCccEEEEECCCCceEEEEEC
Confidence            9999999999999999865444444443

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=96.94  E-value=0.0011  Score=53.20  Aligned_cols=57  Identities=9%  Similarity=0.051  Sum_probs=43.1

Q ss_pred             eEEEEecCCCeecccccccCCe-eEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEe
Q 018395          225 ADLVRLDGKAMCSPGFSCDSAL-QVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI  290 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~-ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~  290 (356)
                      +..=..+||....   +.. .. |++||++|+++++.-  +|..   .++++||+++||+|+--...
T Consensus        44 ~GvWe~tPG~~~~---~~~-~~~E~~~iLeG~~~lt~d--dG~~---~~l~aGD~~~~P~G~~gtWe  101 (116)
T 3es4_A           44 VAVWMAEPGIYNY---AGR-DLEETFVVVEGEALYSQA--DADP---VKIGPGSIVSIAKGVPSRLE  101 (116)
T ss_dssp             EEEEEECSEEEEE---CCC-SEEEEEEEEECCEEEEET--TCCC---EEECTTEEEEECTTCCEEEE
T ss_pred             EEEEecCCceeEC---eeC-CCcEEEEEEEeEEEEEeC--CCeE---EEECCCCEEEECCCCeEEEE
Confidence            3344788998763   333 44 999999999998854  3543   47999999999999987763

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=96.90  E-value=0.0059  Score=53.46  Aligned_cols=72  Identities=18%  Similarity=0.078  Sum_probs=59.1

Q ss_pred             EecCCCcccCeeeCCCEEEEEEe-CeEEEEEEcCC-----CceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEee
Q 018395           43 ALEKNGFALPHYCDSARVAYVLQ-GSGVAGIVLPE-----KEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        43 ~l~Pg~~~~pH~h~a~e~~yVl~-G~~~~~vv~~~-----~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      .-.+|.++..|+|...++++|++ |+...-+++-.     ++.....|..+..++||+|..|-..+.++. ..++...+
T Consensus        66 ~s~~GvlRGlH~h~q~Klv~~~~~G~v~dV~VDlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~-a~~~y~~s  143 (197)
T 1nxm_A           66 FSRKNVLRGLHAEPWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDF-VAYSYLVN  143 (197)
T ss_dssp             EEETTBEEEEEECSSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSE-EEEEEEES
T ss_pred             ECCCCCcceeeecccceEEEEcCCCEEEEEEEECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccCC-eEEEEECC
Confidence            33789999999998889999999 99766677764     455678999999999999999999998765 66665443

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=96.83  E-value=0.021  Score=50.12  Aligned_cols=82  Identities=7%  Similarity=0.012  Sum_probs=64.2

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEcc--CCc----eEEEEEecCCcEEEE-cCCcEEEE-eeC-C
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGP--DGK----RVLETTVKAGNLFIV-PRFYVVSK-IAD-P  293 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~--~g~----~~~~~~l~~Gdv~vv-P~g~~h~~-~~~-~  293 (356)
                      .++..+...||.-.++|=|.+ ++.+++|++|+.+.+..+.  .|.    ..-...+++|||.++ |.+.+|.+ |++ +
T Consensus        70 ~~l~ll~W~PGq~SpiHDH~~-s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~~  148 (200)
T 3eln_A           70 FNLMILCWGEGHGSSIHDHTD-SHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  148 (200)
T ss_dssp             CEEEEEEECTTCBCCEECCTT-CEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             eEEEEEEECCCCcCCCccCCC-ceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCCC
Confidence            667778999999999999998 9999999999999998763  221    112358999999999 88889999 556 5


Q ss_pred             CCeEEEEEEcCC
Q 018395          294 DGLAWFSIITTP  305 (356)
Q Consensus       294 ~~~~~~~~~~~~  305 (356)
                      +.+.-|=++...
T Consensus       149 ~~avSlHvY~pp  160 (200)
T 3eln_A          149 EPAVSLHLYSPP  160 (200)
T ss_dssp             CCEEEEEEEESC
T ss_pred             CCEEEEEeCCCC
Confidence            666666555443

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=96.81  E-value=0.012  Score=51.87  Aligned_cols=71  Identities=17%  Similarity=0.166  Sum_probs=55.7

Q ss_pred             ecCCCcccCeeeC----CCEEEEEEeCeEEEEEEcCC------CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           44 LEKNGFALPHYCD----SARVAYVLQGSGVAGIVLPE------KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        44 l~Pg~~~~pH~h~----a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      ..+|.++..|+|.    ..++++|++|++..-+++-.      ++.....|.+  +..++||+|+.|-+.+.++. ..++
T Consensus        77 ~~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~-a~~~  155 (205)
T 3ryk_A           77 AEAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPH-TIVM  155 (205)
T ss_dssp             SSTTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSS-EEEE
T ss_pred             CCCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCC-EEEE
Confidence            3689999999994    68999999999876667632      3345677865  89999999999999998876 5555


Q ss_pred             EEee
Q 018395          112 FLGD  115 (356)
Q Consensus       112 ~i~~  115 (356)
                      +..+
T Consensus       156 Y~~s  159 (205)
T 3ryk_A          156 YKVD  159 (205)
T ss_dssp             EEES
T ss_pred             EEcC
Confidence            5443

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=96.79  E-value=0.0044  Score=54.81  Aligned_cols=66  Identities=11%  Similarity=0.086  Sum_probs=49.6

Q ss_pred             EEEEecCCCcccC-eeeCCCEEEEEEeCeEEEEEEcCCC----------------------------------ceEEEEE
Q 018395           40 AKLALEKNGFALP-HYCDSARVAYVLQGSGVAGIVLPEK----------------------------------EEKVVAI   84 (356)
Q Consensus        40 ~~~~l~Pg~~~~p-H~h~a~e~~yVl~G~~~~~vv~~~~----------------------------------~~~~~~l   84 (356)
                      ..+-|.|.+...+ |+-..+-++.++.|+=+..+..|..                                  +.....|
T Consensus       126 ~~~wiG~~gs~t~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l  205 (235)
T 4gjz_A          126 INAWFGPQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCIL  205 (235)
T ss_dssp             EEEEEECTTCEEEEECCSSEEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEE
T ss_pred             eEEEEeCCCCCceeeeccccceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEE
Confidence            3455666555554 4446677888999999999887641                                  1135689


Q ss_pred             cCCCEEEeCCCcEEEEEecCC
Q 018395           85 KKGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        85 ~~GDv~~iP~G~~H~~~N~g~  105 (356)
                      ++||+++||+|+.|++.|.++
T Consensus       206 ~pGD~LyiP~gW~H~V~~l~~  226 (235)
T 4gjz_A          206 SPGEILFIPVKYWHYVRALDL  226 (235)
T ss_dssp             CTTCEEEECTTCEEEEEESSS
T ss_pred             CCCCEEEeCCCCcEEEEECCC
Confidence            999999999999999999864

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=96.79  E-value=0.015  Score=50.36  Aligned_cols=70  Identities=14%  Similarity=0.112  Sum_probs=55.3

Q ss_pred             cCCCcccCeee---CCCEEEEEEeCeEEEEEEcCC------CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           45 EKNGFALPHYC---DSARVAYVLQGSGVAGIVLPE------KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        45 ~Pg~~~~pH~h---~a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      .+|.++..|+|   ...++++|++|++..-+++-.      ++.....|.+  +..++||+|+.|-+.+.+++ +.++..
T Consensus        56 ~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~  134 (185)
T 1ep0_A           56 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE-CIVNYK  134 (185)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             cCCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEEe
Confidence            48999999999   678999999999866666643      2445677754  69999999999999998776 666655


Q ss_pred             ee
Q 018395          114 GD  115 (356)
Q Consensus       114 ~~  115 (356)
                      .+
T Consensus       135 ~s  136 (185)
T 1ep0_A          135 CT  136 (185)
T ss_dssp             ES
T ss_pred             cC
Confidence            44

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=96.76  E-value=0.0065  Score=53.69  Aligned_cols=66  Identities=12%  Similarity=0.075  Sum_probs=49.6

Q ss_pred             EEEEecCCCe-ecccccccCCeeEEEEEeceEEEEEEccCC---------------------------------ceEEEE
Q 018395          226 DLVRLDGKAM-CSPGFSCDSALQVTYIVRGSGRAQIVGPDG---------------------------------KRVLET  271 (356)
Q Consensus       226 ~~v~l~~g~~-~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g---------------------------------~~~~~~  271 (356)
                      ..+-+.++|. ..+|+.+.  .-+..++.|+=++.++.|.-                                 .+.++.
T Consensus       126 ~~~wiG~~gs~t~~H~D~~--~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~  203 (235)
T 4gjz_A          126 INAWFGPQGTISPLHQDPQ--QNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSC  203 (235)
T ss_dssp             EEEEEECTTCEEEEECCSS--EEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEE
T ss_pred             eEEEEeCCCCCceeeeccc--cceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEE
Confidence            4455666544 45677654  56999999999999998741                                 023567


Q ss_pred             EecCCcEEEEcCCcEEEEeeCC
Q 018395          272 TVKAGNLFIVPRFYVVSKIADP  293 (356)
Q Consensus       272 ~l~~Gdv~vvP~g~~h~~~~~~  293 (356)
                      .|++||+++||+|++|+..+-+
T Consensus       204 ~l~pGD~LyiP~gW~H~V~~l~  225 (235)
T 4gjz_A          204 ILSPGEILFIPVKYWHYVRALD  225 (235)
T ss_dssp             EECTTCEEEECTTCEEEEEESS
T ss_pred             EECCCCEEEeCCCCcEEEEECC
Confidence            8999999999999999986643

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=96.72  E-value=0.0076  Score=59.34  Aligned_cols=65  Identities=17%  Similarity=0.185  Sum_probs=51.3

Q ss_pred             EEEEecCCCeec--ccccccCCeeEEEEEeceEEEEEEccCC---------------ceEEEEEecCCcEEEEcCCcEEE
Q 018395          226 DLVRLDGKAMCS--PGFSCDSALQVTYIVRGSGRAQIVGPDG---------------KRVLETTVKAGNLFIVPRFYVVS  288 (356)
Q Consensus       226 ~~v~l~~g~~~~--PH~h~~~A~ei~~v~~G~~~~~iv~~~g---------------~~~~~~~l~~Gdv~vvP~g~~h~  288 (356)
                      +.+.+.++|-..  |||-.  -+-+++.+.|+=++.+..|.-               ...++..|++|||+++|+||+|+
T Consensus       141 ~n~y~~~~g~~g~~~H~D~--~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~  218 (442)
T 2xdv_A          141 SNVYITPAGSQGLPPHYDD--VEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQ  218 (442)
T ss_dssp             EEEEEECTTCBCSCSEECS--SEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEE
T ss_pred             cceEECCCCCCCccceECC--cceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEE
Confidence            455677777554  99975  467888899999999988851               22456799999999999999999


Q ss_pred             EeeC
Q 018395          289 KIAD  292 (356)
Q Consensus       289 ~~~~  292 (356)
                      ..+.
T Consensus       219 ~~s~  222 (442)
T 2xdv_A          219 ADTP  222 (442)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            8664

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=96.71  E-value=0.015  Score=50.80  Aligned_cols=72  Identities=17%  Similarity=0.180  Sum_probs=55.6

Q ss_pred             EecCCCcccCeee-C---CCEEEEEEeCeEEEEEEcCC------CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEE
Q 018395           43 ALEKNGFALPHYC-D---SARVAYVLQGSGVAGIVLPE------KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVV  110 (356)
Q Consensus        43 ~l~Pg~~~~pH~h-~---a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~  110 (356)
                      .-.+|.++..|+| .   ..++++|++|++..-+|+-.      ++.....|.+  +..++||+|+.|-+.|.++. ..+
T Consensus        71 ~s~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~-a~~  149 (196)
T 1wlt_A           71 FSRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDS-IVI  149 (196)
T ss_dssp             EECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSE-EEE
T ss_pred             ECCCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEE
Confidence            3358999999999 4   68999999999966666643      2345677864  79999999999999998774 555


Q ss_pred             EEEee
Q 018395          111 LFLGD  115 (356)
Q Consensus       111 l~i~~  115 (356)
                      +...+
T Consensus       150 ly~~s  154 (196)
T 1wlt_A          150 YFITH  154 (196)
T ss_dssp             EEEES
T ss_pred             EEEeC
Confidence            55443

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=96.68  E-value=0.0063  Score=57.94  Aligned_cols=73  Identities=11%  Similarity=0.087  Sum_probs=55.4

Q ss_pred             EEecC-CCeecccccccCCeeEEEEEeceEEEEEE-ccCC--------------------------------ceEEEEEe
Q 018395          228 VRLDG-KAMCSPGFSCDSALQVTYIVRGSGRAQIV-GPDG--------------------------------KRVLETTV  273 (356)
Q Consensus       228 v~l~~-g~~~~PH~h~~~A~ei~~v~~G~~~~~iv-~~~g--------------------------------~~~~~~~l  273 (356)
                      +-+.| |+...|||.+.  +-+++.+.|+=++.+. .|.-                                ...++..|
T Consensus       145 ~~~gp~g~~~~~H~D~~--dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L  222 (342)
T 1vrb_A          145 VYAAKNGGGFKAHFDAY--TNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNL  222 (342)
T ss_dssp             EEEECSSCCCCSEECSS--EEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEE
T ss_pred             EEEeCCCCCCCCeECCh--hcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEE
Confidence            55666 88889999764  5788899999999999 5431                                11356799


Q ss_pred             cCCcEEEEcCCcEEEEeeC-CCCeEEEEEE
Q 018395          274 KAGNLFIVPRFYVVSKIAD-PDGLAWFSII  302 (356)
Q Consensus       274 ~~Gdv~vvP~g~~h~~~~~-~~~~~~~~~~  302 (356)
                      ++|||++||+||+|+..+. ++...-+++.
T Consensus       223 ~pGD~LyiP~gwwH~v~s~~~~~slsvsi~  252 (342)
T 1vrb_A          223 TPGTMLYLPRGLWHSTKSDQATLALNITFG  252 (342)
T ss_dssp             CTTCEEEECTTCEEEEECSSCEEEEEEEEC
T ss_pred             CCCcEEEeCCCccEEEEECCCCceEEEEEC
Confidence            9999999999999998775 3344455555

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=96.65  E-value=0.02  Score=49.55  Aligned_cols=70  Identities=10%  Similarity=0.019  Sum_probs=55.0

Q ss_pred             cCCCcccCeee---CCCEEEEEEeCeEEEEEEcCC------CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           45 EKNGFALPHYC---DSARVAYVLQGSGVAGIVLPE------KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        45 ~Pg~~~~pH~h---~a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      .+|.++..|+|   ...++++|++|++..-+++-.      ++.....|.+  +..++||+|+.|-+.+.+++ +.++..
T Consensus        57 ~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y~  135 (184)
T 2ixk_A           57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEY-AEFLYK  135 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             CCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCC-EEEEEe
Confidence            48999999999   568999999999866666642      2445577765  68999999999999998776 666655


Q ss_pred             ee
Q 018395          114 GD  115 (356)
Q Consensus       114 ~~  115 (356)
                      .+
T Consensus       136 ~s  137 (184)
T 2ixk_A          136 TT  137 (184)
T ss_dssp             ES
T ss_pred             CC
Confidence            44

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=96.62  E-value=0.027  Score=49.57  Aligned_cols=70  Identities=19%  Similarity=0.264  Sum_probs=55.1

Q ss_pred             cCCCcccCeee-C---CCEEEEEEeCeEEEEEEcCC------CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           45 EKNGFALPHYC-D---SARVAYVLQGSGVAGIVLPE------KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        45 ~Pg~~~~pH~h-~---a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      .+|.++..|+| .   ..++++|++|++.--+|+-.      ++.....|.+  +..++||+|+.|-+.+.+++ ..++.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (205)
T 1oi6_A           55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDD-TVMSY  133 (205)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTT-EEEEE
T ss_pred             CCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCC-eEEEE
Confidence            58999999999 4   68999999999876667643      2345677765  58999999999999998877 55555


Q ss_pred             Eee
Q 018395          113 LGD  115 (356)
Q Consensus       113 i~~  115 (356)
                      ..+
T Consensus       134 ~~s  136 (205)
T 1oi6_A          134 MLS  136 (205)
T ss_dssp             EES
T ss_pred             ecC
Confidence            443

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=96.54  E-value=0.013  Score=47.45  Aligned_cols=73  Identities=8%  Similarity=-0.007  Sum_probs=57.5

Q ss_pred             cCCCeeccc---c-cccCCeeEEEEEeceEEEEEEccCCc-e-EEEEEecCCcEEEEcCCcEEEEeeCCCCeEE-EEEEc
Q 018395          231 DGKAMCSPG---F-SCDSALQVTYIVRGSGRAQIVGPDGK-R-VLETTVKAGNLFIVPRFYVVSKIADPDGLAW-FSIIT  303 (356)
Q Consensus       231 ~~g~~~~PH---~-h~~~A~ei~~v~~G~~~~~iv~~~g~-~-~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~-~~~~~  303 (356)
                      -|+++++.|   . ++. ..+.+.|++|+.++-..+.+|+ . .-..-+.+|+..+||++.+|.+..-+++++| +.|+.
T Consensus        22 lP~~ll~~H~~~~Tk~G-twg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsdd~~f~leFyc  100 (127)
T 3bb6_A           22 APAGIFERHLDKGTRPG-VYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFV  100 (127)
T ss_dssp             SCGGGGSSBCCTTCCTT-EEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEEEEEEE
T ss_pred             ChHHHHhhccccCCCCC-EEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCCCEEEEEEEEe
Confidence            467788999   4 887 8899999999999998888775 1 1123577999999999999999875557776 67764


Q ss_pred             C
Q 018395          304 T  304 (356)
Q Consensus       304 ~  304 (356)
                      .
T Consensus       101 ~  101 (127)
T 3bb6_A          101 A  101 (127)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=96.46  E-value=0.045  Score=47.26  Aligned_cols=70  Identities=13%  Similarity=0.070  Sum_probs=54.1

Q ss_pred             cCCCcccCeeeC----CCEEEEEEeCeEEEEEEcCC------CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           45 EKNGFALPHYCD----SARVAYVLQGSGVAGIVLPE------KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        45 ~Pg~~~~pH~h~----a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      .+|.++..|+|.    ..++++|++|++.--+++-.      ++.....|.+  +..++||+|+.|-+.+.+++ ..++.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~-a~~~y  133 (183)
T 1dzr_A           55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEY-AEFLY  133 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             CCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCC-eEEEE
Confidence            489999999993    58999999999866666643      2345577765  68999999999999998776 55555


Q ss_pred             Eee
Q 018395          113 LGD  115 (356)
Q Consensus       113 i~~  115 (356)
                      ..+
T Consensus       134 ~~s  136 (183)
T 1dzr_A          134 KAT  136 (183)
T ss_dssp             EES
T ss_pred             EcC
Confidence            443

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=96.45  E-value=0.031  Score=49.58  Aligned_cols=70  Identities=11%  Similarity=0.078  Sum_probs=54.4

Q ss_pred             cCCCcccCeee-C---CCEEEEEEeCeEEEEEEcCC------CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           45 EKNGFALPHYC-D---SARVAYVLQGSGVAGIVLPE------KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        45 ~Pg~~~~pH~h-~---a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      .+|.++..|+| .   ..++++|++|++.--+++-.      ++.....|.+  +..++||+|+.|-+.|.+++ ..++.
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~~ly  141 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDE-ATLCY  141 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEE
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCC-eEEEE
Confidence            58999999999 4   69999999999866666642      2345577765  58999999999999998776 55555


Q ss_pred             Eee
Q 018395          113 LGD  115 (356)
Q Consensus       113 i~~  115 (356)
                      ..+
T Consensus       142 ~~s  144 (216)
T 2c0z_A          142 LSS  144 (216)
T ss_dssp             EES
T ss_pred             ecC
Confidence            443

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=96.44  E-value=0.019  Score=54.13  Aligned_cols=60  Identities=20%  Similarity=0.299  Sum_probs=40.0

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD  292 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~  292 (356)
                      .++.++++..+.-.   .... ...|+.|++|++.+..   +|.   ...|++||.++||++...+...|
T Consensus       251 F~~~~~~~~~~~~~---~~~~-~~~il~v~~G~~~l~~---~~~---~~~l~~G~~~~vpa~~~~~~i~g  310 (319)
T 1qwr_A          251 FSVYKWDINGEAEM---AQDE-SFLICSVIEGSGLLKY---EDK---TCPLKKGDHFILPAQMPDFTIKG  310 (319)
T ss_dssp             CEEEEEEEEEEEEE---CCCS-SCEEEEEEEEEEEEEE---TTE---EEEEETTCEEEECTTCCCEEEEE
T ss_pred             EEEEEEEECCceEE---ccCC-ccEEEEEEcCeEEEEE---CCE---EEEEcCCcEEEEeCCCceEEEEe
Confidence            45666666644222   1224 6689999999998864   333   24799999999999875444433

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=96.43  E-value=0.051  Score=48.44  Aligned_cols=72  Identities=15%  Similarity=0.123  Sum_probs=55.4

Q ss_pred             EecCCCcccCeee-C---CCEEEEEEeCeEEEEEEcCC------CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEE
Q 018395           43 ALEKNGFALPHYC-D---SARVAYVLQGSGVAGIVLPE------KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVV  110 (356)
Q Consensus        43 ~l~Pg~~~~pH~h-~---a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~  110 (356)
                      .-.+|.++..|+| .   ..++++|++|++.--+|+-.      ++.....|.+  +..++||+|+.|-+.|.+++ ..+
T Consensus        72 ~s~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~-a~v  150 (225)
T 1upi_A           72 VSSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN-STV  150 (225)
T ss_dssp             EECTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS-EEE
T ss_pred             eCCCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCC-EEE
Confidence            3358999999999 4   68999999999876666642      2345577765  58999999999999998877 555


Q ss_pred             EEEee
Q 018395          111 LFLGD  115 (356)
Q Consensus       111 l~i~~  115 (356)
                      +...+
T Consensus       151 ly~~s  155 (225)
T 1upi_A          151 MYLCS  155 (225)
T ss_dssp             EEEES
T ss_pred             EEecC
Confidence            55443

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=96.25  E-value=0.016  Score=55.28  Aligned_cols=73  Identities=14%  Similarity=0.187  Sum_probs=54.9

Q ss_pred             EEec-CCCeecccccccCCeeEEEEEeceEEEEEEccCC----------------------------------ceEEEEE
Q 018395          228 VRLD-GKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG----------------------------------KRVLETT  272 (356)
Q Consensus       228 v~l~-~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g----------------------------------~~~~~~~  272 (356)
                      +-+. +|+...+|+.+.  +-+..+++|+=++.++.|.-                                  .+.+...
T Consensus       187 l~iG~~gs~t~~H~D~~--~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~  264 (349)
T 3d8c_A          187 LLIGMEGNVTPAHYGEQ--QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETV  264 (349)
T ss_dssp             EEEECTTCEEEEECCSE--EEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEE
T ss_pred             EEEECCCCCccceECCh--hcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEE
Confidence            5565 456778899775  57999999999999988741                                  0356789


Q ss_pred             ecCCcEEEEcCCcEEEEeeCC-CC-eEEEEEE
Q 018395          273 VKAGNLFIVPRFYVVSKIADP-DG-LAWFSII  302 (356)
Q Consensus       273 l~~Gdv~vvP~g~~h~~~~~~-~~-~~~~~~~  302 (356)
                      |++||+++||.||+|+..+-+ +. ..-+.+.
T Consensus       265 l~pGD~LyiP~gWwH~V~~l~d~~~sisvn~w  296 (349)
T 3d8c_A          265 VGPGDVLYIPMYWWHHIESLLNGGITITVNFW  296 (349)
T ss_dssp             ECTTCEEEECTTCEEEEEECTTSCCEEEEEEE
T ss_pred             ECCCCEEEECCCCcEEEEEcCCCCcEEEEEEE
Confidence            999999999999999997754 33 3444443

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=96.25  E-value=0.032  Score=48.34  Aligned_cols=71  Identities=11%  Similarity=-0.001  Sum_probs=54.6

Q ss_pred             cCCCeeccccc--ccCCeeEEEEEeceEEEEEEccCC-----ceEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFS--CDSALQVTYIVRGSGRAQIVGPDG-----KRVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h--~~~A~ei~~v~~G~~~~~iv~~~g-----~~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+|.++-.|+|  .. -.++++|++|++..-++|-.-     .+.....|.+  +..++||+|++|-..+-+++++++-.
T Consensus        56 ~~GvlRGlH~q~p~~-q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~  134 (185)
T 1ep0_A           56 VRGVLRGLHFQREKP-QGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYK  134 (185)
T ss_dssp             ETTBEEEEEEESSSC-CCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             cCCeEecceecCCcc-ccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEe
Confidence            47999999999  44 579999999999877777642     1334556765  68999999999999876666666654


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       135 ~  135 (185)
T 1ep0_A          135 C  135 (185)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=96.20  E-value=0.12  Score=49.88  Aligned_cols=59  Identities=12%  Similarity=0.100  Sum_probs=39.8

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA  291 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~  291 (356)
                      .++.++++.++..   +.... +..|+.|++|++.++.   .+ .  ...|++||.++||++..-+...
T Consensus       324 F~v~~~~l~~~~~---~~~~~-~~~il~v~~G~~~l~~---~~-~--~~~l~~G~~~fvpa~~~~~~i~  382 (394)
T 2wfp_A          324 FAFSLHDLALQET---SIGQH-SAAILFCVEGEAVLRK---DE-Q--RLVLKPGESAFIGADESPVNAS  382 (394)
T ss_dssp             CEEEEEECCSSCE---EECCS-SCEEEEEEEEEEEEEE---TT-E--EEEECTTCEEEECGGGCCEEEE
T ss_pred             EEEEEEEEcCCeE---EecCC-CcEEEEEEeceEEEEE---CC-e--EEEEccCcEEEEeCCCceEEEE
Confidence            5567777765532   22223 5689999999998653   22 2  2479999999999986444433

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=96.15  E-value=0.02  Score=56.30  Aligned_cols=64  Identities=20%  Similarity=0.245  Sum_probs=49.5

Q ss_pred             EEEecCCCcc--cCeeeCCCEEEEEEeCeEEEEEEcCCC----------------ceEEEEEcCCCEEEeCCCcEEEEEe
Q 018395           41 KLALEKNGFA--LPHYCDSARVAYVLQGSGVAGIVLPEK----------------EEKVVAIKKGDGIALPFGVVTWWYN  102 (356)
Q Consensus        41 ~~~l~Pg~~~--~pH~h~a~e~~yVl~G~~~~~vv~~~~----------------~~~~~~l~~GDv~~iP~G~~H~~~N  102 (356)
                      .+-+.|++-.  .+||-..+-+++.+.|+=+..+..+..                ......|++||++|+|+|+.|+..+
T Consensus       142 n~y~~~~g~~g~~~H~D~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~~s  221 (442)
T 2xdv_A          142 NVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADT  221 (442)
T ss_dssp             EEEEECTTCBCSCSEECSSEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEEEC
T ss_pred             ceEECCCCCCCccceECCcceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEEEe
Confidence            3455565544  499977777888899999998877641                1235799999999999999999998


Q ss_pred             cC
Q 018395          103 KE  104 (356)
Q Consensus       103 ~g  104 (356)
                      .+
T Consensus       222 ~~  223 (442)
T 2xdv_A          222 PA  223 (442)
T ss_dssp             CS
T ss_pred             cC
Confidence            65

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=96.08  E-value=0.07  Score=49.70  Aligned_cols=58  Identities=14%  Similarity=0.162  Sum_probs=38.5

Q ss_pred             ceeEEEEecCCCeecccccccCCe-eEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSAL-QVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD  292 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~-ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~  292 (356)
                      .++.++++... ..  +.. . .. .++.|++| +.+..   +|+.   ..|++||.++||++...+...|
T Consensus       230 F~v~~~~~~~~-~~--~~~-~-~~~~il~v~~G-~~i~~---~~~~---~~l~~G~~~~ipa~~~~~~i~g  288 (300)
T 1zx5_A          230 FGLEVVDVTGT-AE--IKT-G-GVMNILYAAEG-YFILR---GKET---ADLHRGYSCLVPASTDSFTVES  288 (300)
T ss_dssp             EEEEEEEEEEE-EE--EEC-C-SBCEEEEEEES-CEEEE---SSSE---EEECTTCEEEECTTCCEEEEEE
T ss_pred             EEEEEEEECCc-eE--Eec-C-CceEEEEEccc-EEEEe---CCeE---EEEccceEEEEeCCCceEEEEe
Confidence            44555666532 22  122 4 56 89999999 87765   3333   3699999999999986665444

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=96.08  E-value=0.029  Score=49.05  Aligned_cols=69  Identities=14%  Similarity=0.053  Sum_probs=57.0

Q ss_pred             cCCCeecccccccCCeeEEEEEe-ceEEEEEEccC-----CceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVR-GSGRAQIVGPD-----GKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~-G~~~~~iv~~~-----g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      .+|.++..|+|..  .++++|++ |++..-+||-.     |+. ....|..+..++||+|++|-..+-+++++++-..
T Consensus        68 ~~GvlRGlH~h~q--~Klv~~~~~G~v~dV~VDlR~SpTfg~~-~~v~Ls~~~~L~IP~G~aHgf~~lsd~a~~~y~~  142 (197)
T 1nxm_A           68 RKNVLRGLHAEPW--DKYISVADGGKVLGTWVDLREGETFGNT-YQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLV  142 (197)
T ss_dssp             ETTBEEEEEECSS--CEEEEECSSCCEEEEEEECBSSTTTTCE-EEEEECTTEEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             CCCCcceeeeccc--ceEEEEcCCCEEEEEEEECCCCCCCCeE-EEEEeCCCcEEEeCCCeEEEEEeccCCeEEEEEC
Confidence            6799999999965  59999999 99988888876     433 4568888999999999999998877777766544

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=96.06  E-value=0.022  Score=56.45  Aligned_cols=66  Identities=18%  Similarity=0.256  Sum_probs=51.5

Q ss_pred             EEEEecCCCee--cccccccCCeeEEEEEeceEEEEEEccCC-------------------ceEEEEEecCCcEEEEcCC
Q 018395          226 DLVRLDGKAMC--SPGFSCDSALQVTYIVRGSGRAQIVGPDG-------------------KRVLETTVKAGNLFIVPRF  284 (356)
Q Consensus       226 ~~v~l~~g~~~--~PH~h~~~A~ei~~v~~G~~~~~iv~~~g-------------------~~~~~~~l~~Gdv~vvP~g  284 (356)
                      +.+.+.|+|-.  .|||-+.  +-+++-+.|+=++.+..|.-                   ...++..|++|||++||+|
T Consensus       166 ~N~Y~tp~Gs~g~~pH~D~~--DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g  243 (489)
T 4diq_A          166 SNVYLTPPNSQGFAPHYDDI--EAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRG  243 (489)
T ss_dssp             EEEEEECSSBCCSCCBCCSS--EEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTT
T ss_pred             ceEEecCCCcccccCccCCc--ceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCC
Confidence            45778887754  5999764  45777788888999988742                   2245779999999999999


Q ss_pred             cEEEEeeCC
Q 018395          285 YVVSKIADP  293 (356)
Q Consensus       285 ~~h~~~~~~  293 (356)
                      ++|+..+.+
T Consensus       244 ~~H~~~s~~  252 (489)
T 4diq_A          244 FIHQAECQD  252 (489)
T ss_dssp             CEEEEEBCS
T ss_pred             CceEEEecC
Confidence            999997753

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=96.03  E-value=0.043  Score=47.44  Aligned_cols=71  Identities=6%  Similarity=-0.032  Sum_probs=54.1

Q ss_pred             cCCCeeccccc--ccCCeeEEEEEeceEEEEEEccCC-----ceEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFS--CDSALQVTYIVRGSGRAQIVGPDG-----KRVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h--~~~A~ei~~v~~G~~~~~iv~~~g-----~~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+|.++-.|+|  .. -.++++|++|++..-++|-.-     .+.....|.+  +..++||+|++|-..+-+++++++-.
T Consensus        57 ~~GvlRG~H~q~p~~-q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~  135 (184)
T 2ixk_A           57 ARGVLRGLHYQIRQA-QGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYK  135 (184)
T ss_dssp             ETTBEEEEEEESSSC-CCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             CCCceeeEEeCCCCC-cCEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCCEEEEEe
Confidence            38999999999  44 579999999999877777542     1334556665  68999999999999876666666654


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       136 ~  136 (184)
T 2ixk_A          136 T  136 (184)
T ss_dssp             E
T ss_pred             C
Confidence            3

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=96.00  E-value=0.42  Score=46.82  Aligned_cols=59  Identities=14%  Similarity=0.113  Sum_probs=38.1

Q ss_pred             ceeEEEEec--CCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcE
Q 018395          223 CGADLVRLD--GKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYV  286 (356)
Q Consensus       223 ~s~~~v~l~--~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~  286 (356)
                      .++.++++.  +++-.. ..... ...|++|++|++++..-  .++.. ...|++||+++||++-.
T Consensus       357 F~v~~~~~~~~~~~~~~-~~~~~-~~~illv~~G~g~i~~~--~~~~~-~~~l~~G~~~fvpa~~~  417 (440)
T 1pmi_A          357 FSVLQTIFDKSKGGKQV-IEGLN-GPSIVIATNGKGTIQIT--GDDST-KQKIDTGYVFFVAPGSS  417 (440)
T ss_dssp             CEEEEEECCTTTCCEEE-ECCCS-SCEEEEEEESEEEEEET--TCGGG-CEEEETTCEEEECTTCC
T ss_pred             EEEEEEEecCCCCceeE-EecCC-CcEEEEEEeCeEEEEeC--Ccccc-eEEeccCCEEEEeCCCc
Confidence            567778877  443221 11223 56799999999998752  21010 02699999999999943

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=95.99  E-value=0.051  Score=46.95  Aligned_cols=70  Identities=7%  Similarity=0.014  Sum_probs=53.4

Q ss_pred             cCCCeecccccc---cCCeeEEEEEeceEEEEEEccCCc-----eEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEE
Q 018395          231 DGKAMCSPGFSC---DSALQVTYIVRGSGRAQIVGPDGK-----RVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFS  300 (356)
Q Consensus       231 ~~g~~~~PH~h~---~~A~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~  300 (356)
                      .+|.++-.|+|.   . -.++++|++|++..-+||-.-.     +.....|.+  +..++||.|++|-..+-+++++++-
T Consensus        55 ~~GvlRGlH~q~~p~~-q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y  133 (183)
T 1dzr_A           55 KKNVLRGLHFQRGENA-QGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLY  133 (183)
T ss_dssp             ETTBEEEEEEECGGGC-CCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEE
T ss_pred             CCCeeeeeEccCCCCC-CcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEE
Confidence            379999999995   3 5799999999998777776421     234556665  6899999999999987666665554


Q ss_pred             E
Q 018395          301 I  301 (356)
Q Consensus       301 ~  301 (356)
                      .
T Consensus       134 ~  134 (183)
T 1dzr_A          134 K  134 (183)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=95.98  E-value=0.064  Score=46.91  Aligned_cols=70  Identities=16%  Similarity=0.288  Sum_probs=55.2

Q ss_pred             cCCCcccCeeeC----CCEEEEEEeCeEEEEEEcCC------CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           45 EKNGFALPHYCD----SARVAYVLQGSGVAGIVLPE------KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        45 ~Pg~~~~pH~h~----a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      .+|.++.+|+|.    ...+++|++|+..--+|+--      ++.....|.+  +..++||+|..|-..+.+++ ..+++
T Consensus        52 ~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~SpTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~-a~~~Y  130 (201)
T 4hn1_A           52 HRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDD-ATLVF  130 (201)
T ss_dssp             CTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTT-EEEEE
T ss_pred             CCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCC-eEEEE
Confidence            689999999993    68999999999877777732      3344567765  89999999999999998776 55655


Q ss_pred             Eee
Q 018395          113 LGD  115 (356)
Q Consensus       113 i~~  115 (356)
                      ..+
T Consensus       131 ~~t  133 (201)
T 4hn1_A          131 LCS  133 (201)
T ss_dssp             EES
T ss_pred             eCC
Confidence            443

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=95.97  E-value=0.014  Score=55.71  Aligned_cols=64  Identities=13%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             EEec-CCCcccCeeeCCCEEEEEEeCeEEEEEEcCCC-----------------------------------ceEEEEEc
Q 018395           42 LALE-KNGFALPHYCDSARVAYVLQGSGVAGIVLPEK-----------------------------------EEKVVAIK   85 (356)
Q Consensus        42 ~~l~-Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~-----------------------------------~~~~~~l~   85 (356)
                      +-+. +|+...+|+-..+-+..++.|+=++.+..|..                                   ......|+
T Consensus       187 l~iG~~gs~t~~H~D~~~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~  266 (349)
T 3d8c_A          187 LLIGMEGNVTPAHYGEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVG  266 (349)
T ss_dssp             EEEECTTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEEC
T ss_pred             EEEECCCCCccceECChhcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEEC
Confidence            4555 55666788775578889999999988876531                                   12468999


Q ss_pred             CCCEEEeCCCcEEEEEecCC
Q 018395           86 KGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        86 ~GDv~~iP~G~~H~~~N~g~  105 (356)
                      +||+++||+|+.|++.|.++
T Consensus       267 pGD~LyiP~gWwH~V~~l~d  286 (349)
T 3d8c_A          267 PGDVLYIPMYWWHHIESLLN  286 (349)
T ss_dssp             TTCEEEECTTCEEEEEECTT
T ss_pred             CCCEEEECCCCcEEEEEcCC
Confidence            99999999999999999863

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=95.91  E-value=0.025  Score=51.30  Aligned_cols=71  Identities=6%  Similarity=0.120  Sum_probs=48.8

Q ss_pred             eEEEEecCCCe--ecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC---CCCeEEE
Q 018395          225 ADLVRLDGKAM--CSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD---PDGLAWF  299 (356)
Q Consensus       225 ~~~v~l~~g~~--~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~---~~~~~~~  299 (356)
                      +....|....-  +.+|||.  -.|++||++|++.  .++..+..  ...+++||++++|+|.+|.....   +++.+.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~--~~~i~~v~~G~~~--~i~~~~~~--~~~l~~g~l~~i~p~~~h~~~~~~~~~~~~~~~   82 (276)
T 3gbg_A            9 TNVYRMSKFDTYIFNNLYIN--DYKMFWIDSGIAK--LIDKNCLV--SYEINSSSIILLKKNSIQRFSLTSLSDENINVS   82 (276)
T ss_dssp             EEEEEECTTCEEEEEEEECS--SCEEEEESSSCEE--EEETTTTE--EEEECTTEEEEECTTCEEEEEEEECCSSCEEEE
T ss_pred             hhhhhhhcccchhccHhhhc--ceEEEEEecCceE--EECCccce--eEEEcCCCEEEEcCCCceeeccccCCCcceEEE
Confidence            44455555443  4789984  6899999999999  45532211  25799999999999999998433   2455544


Q ss_pred             EE
Q 018395          300 SI  301 (356)
Q Consensus       300 ~~  301 (356)
                      .+
T Consensus        83 ~i   84 (276)
T 3gbg_A           83 VI   84 (276)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=95.87  E-value=0.054  Score=53.65  Aligned_cols=75  Identities=19%  Similarity=0.235  Sum_probs=54.3

Q ss_pred             EEEecCCCcc--cCeeeCCCEEEEEEeCeEEEEEEcCCCc--------------------eEEEEEcCCCEEEeCCCcEE
Q 018395           41 KLALEKNGFA--LPHYCDSARVAYVLQGSGVAGIVLPEKE--------------------EKVVAIKKGDGIALPFGVVT   98 (356)
Q Consensus        41 ~~~l~Pg~~~--~pH~h~a~e~~yVl~G~~~~~vv~~~~~--------------------~~~~~l~~GDv~~iP~G~~H   98 (356)
                      .+-+.|++..  .|||-..+-++.-+.|+=+..+..+...                    .....|++||++|+|+|+.|
T Consensus       167 N~Y~tp~Gs~g~~pH~D~~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~~H  246 (489)
T 4diq_A          167 NVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIH  246 (489)
T ss_dssp             EEEEECSSBCCSCCBCCSSEEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTCEE
T ss_pred             eEEecCCCcccccCccCCcceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCCce
Confidence            3556666644  5888777777778888888888765421                    13579999999999999999


Q ss_pred             EEEecCCCcEEEEEEee
Q 018395           99 WWYNKEDTELVVLFLGD  115 (356)
Q Consensus        99 ~~~N~g~e~l~~l~i~~  115 (356)
                      +..+.+++.-.-+.+..
T Consensus       247 ~~~s~~~~~SlhlTi~~  263 (489)
T 4diq_A          247 QAECQDGVHSLHLTLST  263 (489)
T ss_dssp             EEEBCSSCCEEEEEEEE
T ss_pred             EEEecCCCceEEEeecc
Confidence            99998665444444443

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=95.83  E-value=0.075  Score=46.66  Aligned_cols=71  Identities=11%  Similarity=0.054  Sum_probs=54.2

Q ss_pred             cCCCeecccccc--cCCeeEEEEEeceEEEEEEccCC-----ceEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFSC--DSALQVTYIVRGSGRAQIVGPDG-----KRVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h~--~~A~ei~~v~~G~~~~~iv~~~g-----~~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+|.++..|+|.  ..-.++++|++|++..-+||-.-     .+.....|.+  +..++||+|++|-..+-+++++++-.
T Consensus        78 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~a~~~Y~  157 (205)
T 3ryk_A           78 EAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPHTIVMYK  157 (205)
T ss_dssp             STTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSSEEEEEE
T ss_pred             CCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCCEEEEEE
Confidence            589999999994  11469999999999888887531     1334557775  79999999999999776666666543

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=95.75  E-value=0.074  Score=46.39  Aligned_cols=72  Identities=8%  Similarity=0.114  Sum_probs=54.3

Q ss_pred             cCCCeecccccc--cCCeeEEEEEeceEEEEEEccCCc-----eEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFSC--DSALQVTYIVRGSGRAQIVGPDGK-----RVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h~--~~A~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+|.++-.|||.  .+-.++++|++|++..-+||-.-.     +.....|.+  +..++||+|++|-..+-+++++++-.
T Consensus        73 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~a~~ly~  152 (196)
T 1wlt_A           73 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFI  152 (196)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEE
T ss_pred             CCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEE
Confidence            589999999994  213699999999998777876421     234557775  79999999999999886667666554


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       153 ~  153 (196)
T 1wlt_A          153 T  153 (196)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=95.72  E-value=1.3  Score=40.95  Aligned_cols=73  Identities=16%  Similarity=-0.017  Sum_probs=56.8

Q ss_pred             EEEEEecCCCcccCeee-CCCEEEEEE-eCeEEEEEEcCCCceEEEEEcCCCEEEeCCC--cEEEEEecCCCcEEEEEEe
Q 018395           39 AAKLALEKNGFALPHYC-DSARVAYVL-QGSGVAGIVLPEKEEKVVAIKKGDGIALPFG--VVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        39 ~~~~~l~Pg~~~~pH~h-~a~e~~yVl-~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G--~~H~~~N~g~e~l~~l~i~  114 (356)
                      +....+.|+.-+.+|-| +-+-+-||+ +|+..-.  +.-|..  ..+++||+-.+=+|  +.|.-.|..+++++.+-+.
T Consensus        42 ld~~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~--DS~Gn~--~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQlW  117 (290)
T 1j1l_A           42 FDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAHE--DFCGHT--GKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLW  117 (290)
T ss_dssp             EEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEEE--ETTSCE--EEECTTCEEEEECTTCEEEEEEECSSSCEEEEEEE
T ss_pred             EEccccCCCCCCCCCCCCCeEEEEEECcceEEEEe--eCCCCc--eEECCCcEEEEeCCCCEEEEeEcCCCCCEEEEEEE
Confidence            45557888887899999 555588999 9998775  544433  68999999999887  6799999766677777766


Q ss_pred             e
Q 018395          115 D  115 (356)
Q Consensus       115 ~  115 (356)
                      .
T Consensus       118 v  118 (290)
T 1j1l_A          118 V  118 (290)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=95.70  E-value=0.041  Score=52.14  Aligned_cols=72  Identities=15%  Similarity=0.262  Sum_probs=52.8

Q ss_pred             EEEEecC-CCeecccccccCCeeEEEEEeceEEEEEEccCC-----------------------------ceEEEEEecC
Q 018395          226 DLVRLDG-KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG-----------------------------KRVLETTVKA  275 (356)
Q Consensus       226 ~~v~l~~-g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g-----------------------------~~~~~~~l~~  275 (356)
                      ..+.+.+ |+...+|+.+.  +-+..++.|+=++.++.|.-                             .+.++..|++
T Consensus       169 s~l~~g~~g~~~~~H~D~~--~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~p  246 (338)
T 3al5_A          169 SVFRISSPGLQLWTHYDVM--DNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEA  246 (338)
T ss_dssp             EEEEEECTTCEEEEECCSS--EEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECT
T ss_pred             ceeEECCCCCCccceECCc--ccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECC
Confidence            3455655 45556788764  56888999999999998731                             0256789999


Q ss_pred             CcEEEEcCCcEEEEeeCCCCeEEEE
Q 018395          276 GNLFIVPRFYVVSKIADPDGLAWFS  300 (356)
Q Consensus       276 Gdv~vvP~g~~h~~~~~~~~~~~~~  300 (356)
                      ||+++||+||+|+..+-+. ..-+.
T Consensus       247 GD~LyiP~gWwH~v~~l~~-sisvn  270 (338)
T 3al5_A          247 GDVLFIPALWFHNVISEEF-GVGVN  270 (338)
T ss_dssp             TCEEEECTTCEEEEEESSC-EEEEE
T ss_pred             CCEEEECCCCeEEEeeCCC-EEEEE
Confidence            9999999999999977543 34444

>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 2.35A {Leishmania major}

Probab=95.58  E-value=0.26  Score=43.56  Aligned_cols=129  Identities=14%  Similarity=0.159  Sum_probs=79.7

Q ss_pred             CCCeEEEEeCCCCCC-----CcccCceEEEEEEecCCCcccCeee--CCCEEEEEEeCe-EEEEEEcCCC----------
Q 018395           16 GNGGSYHAWCPNELP-----MLRQGNIGAAKLALEKNGFALPHYC--DSARVAYVLQGS-GVAGIVLPEK----------   77 (356)
Q Consensus        16 ~~~G~i~~~~~~~~p-----~l~~~~~~~~~~~l~Pg~~~~pH~h--~a~e~~yVl~G~-~~~~vv~~~~----------   77 (356)
                      .+||++++.......     .-...-.+..+.-|.+|..  -|||  +++|+.+...|. .++.++.+++          
T Consensus        34 PEGG~yrEt~Rs~~~v~~~~~~~R~~~TaIYfLL~~g~~--S~~HRv~sdEiW~~h~G~pL~l~li~~dG~~~~~~~~~~  111 (225)
T 3m3i_A           34 PEGGYYSEVVRSAHKVDNEEGNRRHAYTTIYFLCTPESP--SHLHRLCSDETWMYHAGDPLQLHVILKDPQDEDRIAAQP  111 (225)
T ss_dssp             TTSSEEEEEEECSSEEECTTSCEEESCEEEEEEECSSSC--EEEEECSSEEEEEEEEESCEEEEEEESSSTTTTC-----
T ss_pred             CCCceEEEEEECCCcccCCCCCCcccceeEEEEecCCCC--cccEEecCCEEEEEECCCCEEEEEEcCCCcccccccccc
Confidence            389999764432210     0112335677888999985  5666  899999999998 5677777766          


Q ss_pred             ------------------ceEEEEE----cCCC--EEEeCCCcEEEEEecCCC-----cEEEEEEeeCCCCCCCC-ceeE
Q 018395           78 ------------------EEKVVAI----KKGD--GIALPFGVVTWWYNKEDT-----ELVVLFLGDTSKGHKAG-EFTN  127 (356)
Q Consensus        78 ------------------~~~~~~l----~~GD--v~~iP~G~~H~~~N~g~e-----~l~~l~i~~~~~~~~pg-~~~~  127 (356)
                                        ......|    .+|+  .++||+|+.....-.+++     ...++....     .|| +|.+
T Consensus       112 ~~~P~~~~~~~~~~~~~~~~~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~~~~~~~~~~~sLVsCtV-----aPGFdF~D  186 (225)
T 3m3i_A          112 PAAPQAETDTADARPKYQVYRRVLVGARVERGELLQYTVPGGAIFGSSVAADGADGQAGYSLVSCIV-----SPGFDYRD  186 (225)
T ss_dssp             -------------CCSSCEEEEEEESSCGGGTCBSEEEECTTCEEEEECCSSSTTCSSSCEEEEEEE-----ESCCCGGG
T ss_pred             cccccccccccccccccCceEEEEeCCCccCCceeEEEeCCCEEEEEEECCCCcCcCCCeEEEEEEE-----cCCccchh
Confidence                              2233444    4566  578999998877755432     334443322     244 2444


Q ss_pred             EeecccccccccCcHHHHHhhccCCHHHHHHhh
Q 018395          128 FFLTGANGIFTGFSTEFVSRAWDLDENTVKTLV  160 (356)
Q Consensus       128 f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~  160 (356)
                      |-+         ++.+-|.+-|.--++.|++|-
T Consensus       187 Fel---------~~~~~L~~~~P~~~~~I~~lt  210 (225)
T 3m3i_A          187 FEI---------FTQAQLMELYPQHEAVIKQMA  210 (225)
T ss_dssp             CEE---------CBHHHHHHHCGGGHHHHHHHS
T ss_pred             cEe---------cCHHHHHHHCchHHHHHHHhc
Confidence            433         456666667766667777774

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=95.55  E-value=0.11  Score=45.54  Aligned_cols=71  Identities=8%  Similarity=0.011  Sum_probs=53.5

Q ss_pred             cCCCeecccccc--cCCeeEEEEEeceEEEEEEccCCc-----eEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFSC--DSALQVTYIVRGSGRAQIVGPDGK-----RVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h~--~~A~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+|.++-.|+|.  .+-.++++|++|++..-+||-.-.     +.....|.+  +..++||.|++|-..+-+++++++-.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~  134 (205)
T 1oi6_A           55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSYM  134 (205)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEEEE
T ss_pred             CCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCCeEEEEe
Confidence            589999999994  213699999999998888886421     234557776  58999999999999876666655544

>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*

Probab=95.47  E-value=0.43  Score=40.56  Aligned_cols=125  Identities=10%  Similarity=0.078  Sum_probs=79.1

Q ss_pred             CeEEEEeCCCC-------CCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCe-EEEEEEcCCCceEEEEE----c
Q 018395           18 GGSYHAWCPNE-------LPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGS-GVAGIVLPEKEEKVVAI----K   85 (356)
Q Consensus        18 ~G~i~~~~~~~-------~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~-~~~~vv~~~~~~~~~~l----~   85 (356)
                      ||++++.....       ...- ....+..+.-|.+|.....|-.+++|+.+-..|. .++.++.+++......|    .
T Consensus        28 GG~yrEt~rs~~~v~~~~~~~~-R~~~TaIYfLL~~~~~S~~HRv~sdEiW~~~~G~pL~l~~~~~dG~~~~~~LG~d~~  106 (172)
T 3loi_A           28 GGWFRETYRSDVQVEAEGFDGK-RSVLTMIYYLMQAGQPDPFHRVKSDETFVHNLGGSMKIHMIHPDGSYSCSILGNPLE  106 (172)
T ss_dssp             SSEEEEEEECSCEECCTTSSSC-EESCEEEEEEEETTCCEEEEECSSEEEEEEEEESCEEEEEECTTSCEEEEEESCTTT
T ss_pred             CCeEEEEEECcCcccCCCCCCC-cccceEEEEEEcCCCCccCEEecCCEEEEEEcCCCEEEEEEcCCCceEEEEeCCCcc
Confidence            89987643221       1111 2335677888999884434433899999999997 58888888876555555    4


Q ss_pred             CCC---EEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCC-ceeEEeecccccccccCcHHHHHhhccCCHHHHHHhh
Q 018395           86 KGD---GIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAG-EFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLV  160 (356)
Q Consensus        86 ~GD---v~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg-~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~  160 (356)
                      +|+   .++||+|+...... +  ...++....     .|| +|.+|-+         .+++-|.+.|.--++.|++|-
T Consensus       107 ~Ge~~pQ~vVP~G~WqaA~~-~--~~~LVsctV-----aPGF~f~dfel---------~~~~~L~~~~P~~~~~I~~lt  168 (172)
T 3loi_A          107 HPEARHQVVVPRRVWFAQEV-D--GYCLASVLV-----APGFDFKDFSL---------GKREELIKEYPQHRDVIMRCT  168 (172)
T ss_dssp             STTCBSEEEECTTCEEEEEE-S--SEEEEEEEE-----ESCCCGGGCEE---------CCHHHHHHHCGGGHHHHHHTS
T ss_pred             cCCcceEEEECCCEEEEEEe-C--CcEEEEEEE-----cCCccchhcEE---------cCHHHHHHHCchHHHHHHHhc
Confidence            677   78999999877766 2  244443322     244 2444443         456666666665666677664

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=95.45  E-value=0.13  Score=44.98  Aligned_cols=72  Identities=13%  Similarity=0.048  Sum_probs=55.2

Q ss_pred             cCCCeecccccc--cCCeeEEEEEeceEEEEEEccCCc-----eEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFSC--DSALQVTYIVRGSGRAQIVGPDGK-----RVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h~--~~A~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+|.++..|+|.  ..-.++++|++|++.--+||-.-.     +.....|.+  +..++||+|++|-..+-+++++++-.
T Consensus        52 ~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~VDlR~~SpTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~a~~~Y~  131 (201)
T 4hn1_A           52 HRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDDATLVFL  131 (201)
T ss_dssp             CTTBEEEEEEECSSSCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTTEEEEEE
T ss_pred             CCCceEEEEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCCeEEEEe
Confidence            689999999985  115799999999999889986421     233446665  78999999999999887677766544


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       132 ~  132 (201)
T 4hn1_A          132 C  132 (201)
T ss_dssp             E
T ss_pred             C
Confidence            3

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=95.39  E-value=0.087  Score=49.88  Aligned_cols=68  Identities=13%  Similarity=0.043  Sum_probs=52.6

Q ss_pred             EEEecC-CCeecccccccCCeeEEEEEeceEEEEEEccCC--------------------------------------ce
Q 018395          227 LVRLDG-KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG--------------------------------------KR  267 (356)
Q Consensus       227 ~v~l~~-g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g--------------------------------------~~  267 (356)
                      .+-+.+ |+....|+.+...+-+..++.|+=++.++.|.-                                      .+
T Consensus       175 ~~~~G~~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~  254 (336)
T 3k2o_A          175 WFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFK  254 (336)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGC
T ss_pred             EEEECCCCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcccccCc
Confidence            345555 566789999873357999999999999998741                                      02


Q ss_pred             EEEEEecCCcEEEEcCCcEEEEeeCCC
Q 018395          268 VLETTVKAGNLFIVPRFYVVSKIADPD  294 (356)
Q Consensus       268 ~~~~~l~~Gdv~vvP~g~~h~~~~~~~  294 (356)
                      .+...|++||+++||.|++|+..+.++
T Consensus       255 ~~~~~l~pGd~l~iP~gw~H~v~~~~~  281 (336)
T 3k2o_A          255 PLEILQKPGETVFVPGGWWHVVLNLDT  281 (336)
T ss_dssp             CEEEEECTTCEEEECTTCEEEEEESSC
T ss_pred             eEEEEECCCCEEEeCCCCcEEEecCCC
Confidence            256789999999999999999876554

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=95.38  E-value=0.024  Score=53.73  Aligned_cols=65  Identities=12%  Similarity=0.083  Sum_probs=49.0

Q ss_pred             EEEecC-CCcccCeeeCCCEEEEEEeCeEEEEEEcCCC------------------------------ceEEEEEcCCCE
Q 018395           41 KLALEK-NGFALPHYCDSARVAYVLQGSGVAGIVLPEK------------------------------EEKVVAIKKGDG   89 (356)
Q Consensus        41 ~~~l~P-g~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~------------------------------~~~~~~l~~GDv   89 (356)
                      .+-+.| |+...+|+-..+-++.++.|+=++.+..|..                              ......|++||+
T Consensus       170 ~l~~g~~g~~~~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~pGD~  249 (338)
T 3al5_A          170 VFRISSPGLQLWTHYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDV  249 (338)
T ss_dssp             EEEEECTTCEEEEECCSSEEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECTTCE
T ss_pred             eeEECCCCCCccceECCcccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECCCCE
Confidence            344444 5556677765667888899999988876521                              134688999999


Q ss_pred             EEeCCCcEEEEEecCC
Q 018395           90 IALPFGVVTWWYNKED  105 (356)
Q Consensus        90 ~~iP~G~~H~~~N~g~  105 (356)
                      +|||+|+.|+..|.+.
T Consensus       250 LyiP~gWwH~v~~l~~  265 (338)
T 3al5_A          250 LFIPALWFHNVISEEF  265 (338)
T ss_dssp             EEECTTCEEEEEESSC
T ss_pred             EEECCCCeEEEeeCCC
Confidence            9999999999999853

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=95.07  E-value=0.074  Score=52.31  Aligned_cols=64  Identities=13%  Similarity=0.138  Sum_probs=51.8

Q ss_pred             cCCCeecccccccCCeeEEEEEeceEEEEEEccCC------------------------ceEEEEEecCCcEEEEcCCcE
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG------------------------KRVLETTVKAGNLFIVPRFYV  286 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g------------------------~~~~~~~l~~Gdv~vvP~g~~  286 (356)
                      .+|+....|+.+.+++-|..++.|+=++-++.|.-                        .+.+...+++||+++||.||+
T Consensus       204 p~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfIPsGWw  283 (451)
T 2yu1_A          204 VRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIPSGWI  283 (451)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEECTTCE
T ss_pred             cCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEeCCCce
Confidence            44777788999885567899999999999998852                        124567899999999999999


Q ss_pred             EEEeeCCC
Q 018395          287 VSKIADPD  294 (356)
Q Consensus       287 h~~~~~~~  294 (356)
                      |+..+.++
T Consensus       284 H~V~nled  291 (451)
T 2yu1_A          284 HAVYTPTD  291 (451)
T ss_dssp             EEEECSSC
T ss_pred             EEEecCCC
Confidence            99976544

>3loi_A Putative uncharacterized protein; beta barrel, unknown function; 2.10A {Branchiostoma belcheri tsingtauense} SCOP: b.82.1.0 PDB: 3lzz_A*

Probab=95.05  E-value=0.56  Score=39.85  Aligned_cols=109  Identities=16%  Similarity=0.129  Sum_probs=74.2

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEece-EEEEEEccCCceEEEE----EecCCc---EEEEcCCcEEEEeeCCC
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGS-GRAQIVGPDGKRVLET----TVKAGN---LFIVPRFYVVSKIADPD  294 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~-~~~~iv~~~g~~~~~~----~l~~Gd---v~vvP~g~~h~~~~~~~  294 (356)
                      .+.-..-|.+|...  |||...+.|+-+-..|. .++-++.++|.- -..    ++..|+   .++||+|.+..-..  .
T Consensus        53 ~TaIYfLL~~~~~S--~~HRv~sdEiW~~~~G~pL~l~~~~~dG~~-~~~~LG~d~~~Ge~~pQ~vVP~G~WqaA~~--~  127 (172)
T 3loi_A           53 LTMIYYLMQAGQPD--PFHRVKSDETFVHNLGGSMKIHMIHPDGSY-SCSILGNPLEHPEARHQVVVPRRVWFAQEV--D  127 (172)
T ss_dssp             CEEEEEEEETTCCE--EEEECSSEEEEEEEEESCEEEEEECTTSCE-EEEEESCTTTSTTCBSEEEECTTCEEEEEE--S
T ss_pred             ceEEEEEEcCCCCc--cCEEecCCEEEEEEcCCCEEEEEEcCCCce-EEEEeCCCcccCCcceEEEECCCEEEEEEe--C
Confidence            34555667888754  88876699999999995 589999999853 122    456788   78999999876544  5


Q ss_pred             CeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHHHHHHh
Q 018395          295 GLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRS  343 (356)
Q Consensus       295 ~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~~~l~~  343 (356)
                      +..+++..-+  |++.|-     =+.-.+.+-|.+.|.--++.+++|-.
T Consensus       128 ~~~LVsctVa--PGF~f~-----dfel~~~~~L~~~~P~~~~~I~~lt~  169 (172)
T 3loi_A          128 GYCLASVLVA--PGFDFK-----DFSLGKREELIKEYPQHRDVIMRCTS  169 (172)
T ss_dssp             SEEEEEEEEE--SCCCGG-----GCEECCHHHHHHHCGGGHHHHHHTSC
T ss_pred             CcEEEEEEEc--CCccch-----hcEEcCHHHHHHHCchHHHHHHHhcc
Confidence            5666655433  333321     12224778888888777788888754

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=94.99  E-value=0.21  Score=44.47  Aligned_cols=71  Identities=14%  Similarity=0.012  Sum_probs=52.7

Q ss_pred             cCCCeecccccc--cCCeeEEEEEeceEEEEEEccCCc-----eEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFSC--DSALQVTYIVRGSGRAQIVGPDGK-----RVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h~--~~A~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+|-++-.|+|.  .+-.++++|++|++..-+||-.-.     +.....|.+  +..++||.|++|-..+-+++++++-.
T Consensus        74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~vly~  153 (225)
T 1upi_A           74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYL  153 (225)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEE
T ss_pred             CCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCCEEEEEe
Confidence            589999999994  112699999999998777875411     234556765  58999999999999876666655543

>1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region; jelly roll motif, cupin superfamily, structural genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae} SCOP: b.82.1.16 PDB: 1xe8_A*

Probab=94.96  E-value=0.28  Score=42.86  Aligned_cols=67  Identities=16%  Similarity=0.167  Sum_probs=48.3

Q ss_pred             eEEEEEEecCCC-cccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEc----CCC--EEEeCCCcEEEEEec
Q 018395           37 IGAAKLALEKNG-FALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIK----KGD--GIALPFGVVTWWYNK  103 (356)
Q Consensus        37 ~~~~~~~l~Pg~-~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~----~GD--v~~iP~G~~H~~~N~  103 (356)
                      .+..+.-|.++. ....|-.+++|+.+-..|....-++.+++...+..|.    .|+  -++||+|+.......
T Consensus        79 ~TaIYfLL~~~~~~S~wHRv~sdEiW~~h~G~p~~~li~~dg~~~~~~LG~dl~~Ge~pQ~vVPaG~WqaA~~~  152 (203)
T 1xe7_A           79 STLIYYLLTPDSPIGKFHKNINRIIHILQRGKGQYVLVYPDGQVKSFKVGFDYKNGEVSQWVVPGGVFKASFLL  152 (203)
T ss_dssp             CEEEEEEEBTTBCEEEEEEESSCEEEEEEEECEEEEEECTTSCEEEEEESSCGGGTCBSEEEECTTCEEEEEEC
T ss_pred             eeEEEEEEcCCCCcccceeeCCCEEEEEEcCCccEEEEcCCCCEEEEEeCCCcccCcccEEEEcCCEEEEeEec
Confidence            466677788876 4444444999999999998777677777765545553    355  489999998877654

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=94.96  E-value=0.42  Score=42.58  Aligned_cols=83  Identities=10%  Similarity=0.151  Sum_probs=61.6

Q ss_pred             CceEEEEEEecCCCcccCeee-CCCEEEEEEeC-eEEEEEEcCC---------------CceE------EEEEcCCCEEE
Q 018395           35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQG-SGVAGIVLPE---------------KEEK------VVAIKKGDGIA   91 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G-~~~~~vv~~~---------------~~~~------~~~l~~GDv~~   91 (356)
                      ..+.-..+.+.||...+.|+| .-.|-+++--| +..+.+...+               |..+      ...|+||+.+-
T Consensus       104 k~YaeK~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiT  183 (246)
T 3kmh_A          104 KCYAEKIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESIC  183 (246)
T ss_dssp             CCEEEEEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEE
T ss_pred             CcceeeEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEe
Confidence            368888999999999999999 88888888887 5555554432               1111      24899999999


Q ss_pred             eCCCcEEEEEecCC-CcEEEEEEeeCC
Q 018395           92 LPFGVVTWWYNKED-TELVVLFLGDTS  117 (356)
Q Consensus        92 iP~G~~H~~~N~g~-e~l~~l~i~~~~  117 (356)
                      +|+|..||++..+. .++.+--+...+
T Consensus       184 l~Pg~~H~F~ae~g~G~vligEVSt~N  210 (246)
T 3kmh_A          184 LPPGLYHSFWAEAGFGDVLVGEVSSVN  210 (246)
T ss_dssp             ECTTEEEEEEECTTSCCEEEEEEEECC
T ss_pred             cCCCCEEEEEecCCCccEEEEEcccCc
Confidence            99999999998665 245555555443

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=94.89  E-value=0.18  Score=44.54  Aligned_cols=71  Identities=11%  Similarity=-0.106  Sum_probs=52.5

Q ss_pred             cCCCeeccccccc--CCeeEEEEEeceEEEEEEccCCc-----eEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFSCD--SALQVTYIVRGSGRAQIVGPDGK-----RVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h~~--~A~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+|-++-.|+|..  +-.++++|++|++..-+||-.-.     +.....|.+  +..++||.|++|-..+-+++++++-.
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~~ly~  142 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYL  142 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCCeEEEEe
Confidence            4799999999951  12699999999998777776421     234556766  47999999999999876666655543

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=94.85  E-value=0.058  Score=53.67  Aligned_cols=65  Identities=11%  Similarity=0.173  Sum_probs=52.5

Q ss_pred             EEe-cCCCeecccccccCCeeEEEEEeceEEEEEEccCC------------------------ceEEEEEecCCcEEEEc
Q 018395          228 VRL-DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG------------------------KRVLETTVKAGNLFIVP  282 (356)
Q Consensus       228 v~l-~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g------------------------~~~~~~~l~~Gdv~vvP  282 (356)
                      +-+ .+|+....|+.+.+.+-|..++.|+=++-++.|.-                        .+.+...+++||+++||
T Consensus       270 ~~mG~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIP  349 (488)
T 3kv5_D          270 CLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVP  349 (488)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEEC
T ss_pred             EEEcCCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEeC
Confidence            444 45777889999985667889999999999998831                        13456789999999999


Q ss_pred             CCcEEEEeeC
Q 018395          283 RFYVVSKIAD  292 (356)
Q Consensus       283 ~g~~h~~~~~  292 (356)
                      .||+|+..+-
T Consensus       350 sGWwH~V~nl  359 (488)
T 3kv5_D          350 TGWIHAVLTS  359 (488)
T ss_dssp             TTCEEEEEEE
T ss_pred             CCceEEeeCC
Confidence            9999999664

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=94.84  E-value=0.035  Score=53.17  Aligned_cols=67  Identities=10%  Similarity=0.203  Sum_probs=52.6

Q ss_pred             EEe-cCCCeecccccccCCeeEEEEEeceEEEEEEccCC------------------------ceEEEEEecCCcEEEEc
Q 018395          228 VRL-DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG------------------------KRVLETTVKAGNLFIVP  282 (356)
Q Consensus       228 v~l-~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g------------------------~~~~~~~l~~Gdv~vvP  282 (356)
                      +-+ .+|+....|+.+.+++-|..+++|+=++-++.|.-                        .+.+...+++||+++||
T Consensus       151 l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtLfIP  230 (371)
T 3k3o_A          151 CLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIP  230 (371)
T ss_dssp             EEEECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEETTCEEEEC
T ss_pred             EEEcCCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCCccchhhcccccCceEEEEECCCcEEEeC
Confidence            344 45777789999985566889999999999987741                        13456799999999999


Q ss_pred             CCcEEEEeeCCC
Q 018395          283 RFYVVSKIADPD  294 (356)
Q Consensus       283 ~g~~h~~~~~~~  294 (356)
                      .||+|+..+.++
T Consensus       231 sGWwH~V~nled  242 (371)
T 3k3o_A          231 TGWIHAVLTPVD  242 (371)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCCeEEEecCCC
Confidence            999999966433

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=94.83  E-value=0.09  Score=51.61  Aligned_cols=67  Identities=10%  Similarity=0.220  Sum_probs=53.4

Q ss_pred             EEec-CCCeecccccccCCeeEEEEEeceEEEEEEccCC------------------------ceEEEEEecCCcEEEEc
Q 018395          228 VRLD-GKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG------------------------KRVLETTVKAGNLFIVP  282 (356)
Q Consensus       228 v~l~-~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g------------------------~~~~~~~l~~Gdv~vvP  282 (356)
                      +-+. +|+....|..+.+++-|..+++|+=++-++.|.-                        .+.+...+++||+++||
T Consensus       235 ~~mG~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIP  314 (447)
T 3kv4_A          235 CLMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIP  314 (447)
T ss_dssp             EEEECTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred             EEEeCCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCcEEecC
Confidence            4444 4677789999886678899999999999998851                        12356789999999999


Q ss_pred             CCcEEEEeeCCC
Q 018395          283 RFYVVSKIADPD  294 (356)
Q Consensus       283 ~g~~h~~~~~~~  294 (356)
                      .||+|+..+..+
T Consensus       315 sGWwH~V~nled  326 (447)
T 3kv4_A          315 TGWIHAVLTPVD  326 (447)
T ss_dssp             TTCEEEEEESSC
T ss_pred             CCCeEEEecCCC
Confidence            999999976544

>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A

Probab=94.75  E-value=2  Score=39.33  Aligned_cols=76  Identities=9%  Similarity=0.102  Sum_probs=47.8

Q ss_pred             ceeEEEEecCCCee---cccccccCCeeEEEEEe----ceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCC
Q 018395          223 CGADLVRLDGKAMC---SPGFSCDSALQVTYIVR----GSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDG  295 (356)
Q Consensus       223 ~s~~~v~l~~g~~~---~PH~h~~~A~ei~~v~~----G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~  295 (356)
                      +-+..-.|+|||..   +||-|-+ -.|..|--+    |. -++++.+.. ....-.++-||++++|..++|. -.|.++
T Consensus       180 llmg~evltpgg~WSSyPpHkHDr-r~EeyyYF~l~~~gf-v~q~~g~p~-Etrhi~V~n~daVlvP~wh~h~-~~G~~~  255 (282)
T 1xru_A          180 LSMGLTELAPGNLWNTMPCHTHER-RMEVYFYFNMDDDAC-VFHMMGQPQ-ETRHIVMHNEQAVISPSWSIHS-GVGTKA  255 (282)
T ss_dssp             CEEEEEEECTTCCEESCSEEECTT-EEEEEEEESCCTTCC-EEEEEEETT-EEEEEEECSSEEEEECTTCEEE-EEESSC
T ss_pred             EEEEEEEEeCCCCcCCCCCccCCC-CceEEEEEEeCCCCE-EEEEeCCCC-CeeEEEEECCCEEEeCCCCCCC-CCCccc
Confidence            44666778888754   8999987 777777665    33 344444332 2112268999999999556555 336655


Q ss_pred             eEEEEEE
Q 018395          296 LAWFSII  302 (356)
Q Consensus       296 ~~~~~~~  302 (356)
                      .-|+-+.
T Consensus       256 Y~ylwvM  262 (282)
T 1xru_A          256 YTFIWGM  262 (282)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            4444443

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=94.59  E-value=0.14  Score=41.28  Aligned_cols=64  Identities=16%  Similarity=0.020  Sum_probs=49.3

Q ss_pred             CCCcccCe---e-e-CCCEEEEEEeCeEEEEEEcCCCc---eEEEEEcCCCEEEeCCCcEEEEEecCCCcEEE
Q 018395           46 KNGFALPH---Y-C-DSARVAYVLQGSGVAGIVLPEKE---EKVVAIKKGDGIALPFGVVTWWYNKEDTELVV  110 (356)
Q Consensus        46 Pg~~~~pH---~-h-~a~e~~yVl~G~~~~~vv~~~~~---~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~  110 (356)
                      |.++...|   . + ..-+.+.|++|+.++...++++.   ++..-..+|+...+|++..|.+.-..+ +++|
T Consensus        23 P~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsd-d~~f   94 (127)
T 3bb6_A           23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTD-DTYF   94 (127)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESST-TCEE
T ss_pred             hHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCC-CEEE
Confidence            66778888   4 4 45578889999999987776654   344678999999999999999997444 3444

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=94.56  E-value=0.07  Score=52.39  Aligned_cols=62  Identities=16%  Similarity=0.226  Sum_probs=48.7

Q ss_pred             cCCCcccCeee--CCCEEEEEEeCeEEEEEEcCCC-------------------------ceEEEEEcCCCEEEeCCCcE
Q 018395           45 EKNGFALPHYC--DSARVAYVLQGSGVAGIVLPEK-------------------------EEKVVAIKKGDGIALPFGVV   97 (356)
Q Consensus        45 ~Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~-------------------------~~~~~~l~~GDv~~iP~G~~   97 (356)
                      .+|+....|+-  ...-|..|++|+=+..++.|..                         +-....+++||+++||+|+.
T Consensus       239 ~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIPsGWw  318 (447)
T 3kv4_A          239 VRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWI  318 (447)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCcEEecCCCCe
Confidence            45666678876  4456788999999998887652                         12357999999999999999


Q ss_pred             EEEEecCCC
Q 018395           98 TWWYNKEDT  106 (356)
Q Consensus        98 H~~~N~g~e  106 (356)
                      |++.|..+.
T Consensus       319 H~V~nleds  327 (447)
T 3kv4_A          319 HAVLTPVDC  327 (447)
T ss_dssp             EEEEESSCE
T ss_pred             EEEecCCCE
Confidence            999998654

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=94.49  E-value=0.088  Score=50.82  Aligned_cols=66  Identities=11%  Similarity=0.174  Sum_probs=52.6

Q ss_pred             EEEecC-CCeecccccccCCeeEEEEEeceEEEEEEccCC------------------------ceEEEEEecCCcEEEE
Q 018395          227 LVRLDG-KAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG------------------------KRVLETTVKAGNLFIV  281 (356)
Q Consensus       227 ~v~l~~-g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g------------------------~~~~~~~l~~Gdv~vv  281 (356)
                      .+-+.| |+....|+.+.+++-|..++.|+=++-++.|.-                        .+.+...+++||+++|
T Consensus       178 ~l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~~~~e~~~~~~~~~~~~v~l~pGe~lfI  257 (397)
T 3kv9_A          178 YCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFV  257 (397)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEEEEEETTCEEEE
T ss_pred             EEEEcCCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCCCcchhhhccccCceEEEEECCCCEEEe
Confidence            455555 666777999986667899999999999998841                        1245678999999999


Q ss_pred             cCCcEEEEeeC
Q 018395          282 PRFYVVSKIAD  292 (356)
Q Consensus       282 P~g~~h~~~~~  292 (356)
                      |.||+|+..+-
T Consensus       258 PsGW~H~V~nl  268 (397)
T 3kv9_A          258 PTGWIHAVLTS  268 (397)
T ss_dssp             CTTCEEEEEEE
T ss_pred             CCCCeEEccCC
Confidence            99999998654

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=94.44  E-value=0.049  Score=54.21  Aligned_cols=61  Identities=16%  Similarity=0.212  Sum_probs=48.3

Q ss_pred             cCCCcccCeee--CCCEEEEEEeCeEEEEEEcCCC-------------------------ceEEEEEcCCCEEEeCCCcE
Q 018395           45 EKNGFALPHYC--DSARVAYVLQGSGVAGIVLPEK-------------------------EEKVVAIKKGDGIALPFGVV   97 (356)
Q Consensus        45 ~Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~-------------------------~~~~~~l~~GDv~~iP~G~~   97 (356)
                      .+|+....|+.  ...-|..++.|+=+..++.|..                         +-....+++||+++||+|+.
T Consensus       274 ~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIPsGWw  353 (488)
T 3kv5_D          274 VQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWI  353 (488)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEeCCCce
Confidence            55667788887  3445778999999998887741                         12357899999999999999


Q ss_pred             EEEEecCC
Q 018395           98 TWWYNKED  105 (356)
Q Consensus        98 H~~~N~g~  105 (356)
                      |++.|..+
T Consensus       354 H~V~nled  361 (488)
T 3kv5_D          354 HAVLTSQD  361 (488)
T ss_dssp             EEEEEEEE
T ss_pred             EEeeCCCC
Confidence            99999754

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=94.41  E-value=0.055  Score=52.12  Aligned_cols=64  Identities=13%  Similarity=0.243  Sum_probs=52.1

Q ss_pred             cCCCeecccccccCCeeEEEEEeceEEEEEEccCC------------------------ceEEEEEecCCcEEEEcCCcE
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG------------------------KRVLETTVKAGNLFIVPRFYV  286 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g------------------------~~~~~~~l~~Gdv~vvP~g~~  286 (356)
                      ..|+....|..+.+++-|..+++|+=++-++.|.-                        .+-+...+++||+++||.||+
T Consensus       182 p~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIPsGWw  261 (392)
T 3pua_A          182 VKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIPSGWI  261 (392)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCcEEeeCCCce
Confidence            45788889999986678999999999999988742                        123567999999999999999


Q ss_pred             EEEeeCCC
Q 018395          287 VSKIADPD  294 (356)
Q Consensus       287 h~~~~~~~  294 (356)
                      |+..+..+
T Consensus       262 H~V~nled  269 (392)
T 3pua_A          262 YATLTPVD  269 (392)
T ss_dssp             EEEEEEEE
T ss_pred             EEEecCCC
Confidence            99866433

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=94.13  E-value=0.061  Score=51.49  Aligned_cols=61  Identities=16%  Similarity=0.226  Sum_probs=47.5

Q ss_pred             cCCCcccCeee-CC-CEEEEEEeCeEEEEEEcCCC-------------------------ceEEEEEcCCCEEEeCCCcE
Q 018395           45 EKNGFALPHYC-DS-ARVAYVLQGSGVAGIVLPEK-------------------------EEKVVAIKKGDGIALPFGVV   97 (356)
Q Consensus        45 ~Pg~~~~pH~h-~a-~e~~yVl~G~~~~~vv~~~~-------------------------~~~~~~l~~GDv~~iP~G~~   97 (356)
                      .+|+....|+. .+ .-|..+++|+=+..++.|..                         +-....+++||+++||+|+.
T Consensus       155 p~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtLfIPsGWw  234 (371)
T 3k3o_A          155 VRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGWI  234 (371)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCCccchhhcccccCceEEEEECCCcEEEeCCCCe
Confidence            45666778887 44 45778999999998876641                         12357999999999999999


Q ss_pred             EEEEecCC
Q 018395           98 TWWYNKED  105 (356)
Q Consensus        98 H~~~N~g~  105 (356)
                      |++.|..+
T Consensus       235 H~V~nled  242 (371)
T 3k3o_A          235 HAVLTPVD  242 (371)
T ss_dssp             EEEEEEEE
T ss_pred             EEEecCCC
Confidence            99999754

>1znp_A Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0, structural genomics, PSI, protein struc initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16

Probab=94.05  E-value=1.7  Score=36.14  Aligned_cols=108  Identities=18%  Similarity=0.194  Sum_probs=70.6

Q ss_pred             CCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCe-EEEEEEcCCCceEEEEE----cCCCE
Q 018395           16 GNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGS-GVAGIVLPEKEEKVVAI----KKGDG   89 (356)
Q Consensus        16 ~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~-~~~~vv~~~~~~~~~~l----~~GDv   89 (356)
                      .+||++++.-...... ...-.+..+.-|.+|.....|-. +++|+.+-..|. .++.++.+++..+...|    ..|+.
T Consensus        20 PEGG~yrEt~Rs~~~~-~R~~~TaIYfLL~~g~~S~wHRv~~sdEiW~~h~G~pL~l~~~~~dg~~~~~~LG~d~~~Ge~   98 (154)
T 1znp_A           20 PEGGFYHQTFRDKAGG-ERGHSTAIYYLLEKGVRSHWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILEGER   98 (154)
T ss_dssp             TTSSEEEEEEECSSST-TTCSCEEEEEEEESSCCEEEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTTTEE
T ss_pred             CCCccEEEEEeCCCCC-CCcceeEEEEEecCCCCCcceeccCCCEEEEeECCCCEEEEEEcCCCcEEEEEeCCCcccCcc
Confidence            3899997643322112 22345677778889887777776 899999999988 77777777765444545    45654


Q ss_pred             --EEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCC-ceeEEeec
Q 018395           90 --IALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAG-EFTNFFLT  131 (356)
Q Consensus        90 --~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg-~~~~f~la  131 (356)
                        ++||+|+.......+  ...++....     .|| +|++|-++
T Consensus        99 pQ~vVP~G~WqaA~~~g--~~~LVsCtV-----aPGF~f~dFel~  136 (154)
T 1znp_A           99 PQVIVPANCWQSAESLG--DFTLVGCTV-----SPGFAFSSFVMA  136 (154)
T ss_dssp             SEEEECTTCEEEEEESS--SEEEEEEEE-----SSCCCGGGEEEC
T ss_pred             cEEEEcCCEEEEeeECC--CeEEEEEEe-----cCCCcccccEec
Confidence              899999988776554  344444332     255 35566664

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=93.91  E-value=0.73  Score=40.51  Aligned_cols=79  Identities=9%  Similarity=-0.072  Sum_probs=61.0

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEcc--CCceE--E-EEEecCCcEEEEcCC--cEEEE-eeC-C
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGP--DGKRV--L-ETTVKAGNLFIVPRF--YVVSK-IAD-P  293 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~--~g~~~--~-~~~l~~Gdv~vvP~g--~~h~~-~~~-~  293 (356)
                      +++..+...||--.++|=|.  ++.++.|++|+.+.++...  +|...  - ...+.+||+.+++.+  .+|-+ |++ +
T Consensus        73 f~v~~l~W~PGq~spiHDH~--swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d  150 (211)
T 3uss_A           73 FSVVSFVWGPGQITPVHDHR--VWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSD  150 (211)
T ss_dssp             CEEEEEEECTTCBCCSBCCS--SCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             EEEEEEEECCCCcCCCCCCC--eeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCEEEEccCCCC
Confidence            66888899999999999996  6899999999999888653  33211  0 247999999999976  89999 554 5


Q ss_pred             CCeEEEEEEc
Q 018395          294 DGLAWFSIIT  303 (356)
Q Consensus       294 ~~~~~~~~~~  303 (356)
                      +.+.-|=++.
T Consensus       151 ~~avSLHvYg  160 (211)
T 3uss_A          151 RTSISIHVYG  160 (211)
T ss_dssp             SCEEEEEEES
T ss_pred             CCEEEEEEcC
Confidence            6666665553

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=93.87  E-value=0.079  Score=51.02  Aligned_cols=62  Identities=18%  Similarity=0.182  Sum_probs=48.5

Q ss_pred             ecCCCcccCeee--CCCEEEEEEeCeEEEEEEcCCC-------------------------ceEEEEEcCCCEEEeCCCc
Q 018395           44 LEKNGFALPHYC--DSARVAYVLQGSGVAGIVLPEK-------------------------EEKVVAIKKGDGIALPFGV   96 (356)
Q Consensus        44 l~Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~-------------------------~~~~~~l~~GDv~~iP~G~   96 (356)
                      =..|+....|+-  ...-|..|++|+=+.-++.|..                         +-....+++||++++|+|+
T Consensus       181 Gp~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIPsGW  260 (392)
T 3pua_A          181 CVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIPSGW  260 (392)
T ss_dssp             ECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTCEEEECTTC
T ss_pred             eCCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCcEEeeCCCc
Confidence            355667778876  4456888999999998877642                         1135799999999999999


Q ss_pred             EEEEEecCC
Q 018395           97 VTWWYNKED  105 (356)
Q Consensus        97 ~H~~~N~g~  105 (356)
                      .|++.|..+
T Consensus       261 wH~V~nled  269 (392)
T 3pua_A          261 IYATLTPVD  269 (392)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEecCCC
Confidence            999999754

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=93.87  E-value=0.088  Score=48.69  Aligned_cols=71  Identities=18%  Similarity=0.129  Sum_probs=45.4

Q ss_pred             ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEc--CCC-----ceEEEEEcCCCEEEeCCCcEEEEEecCCCc
Q 018395           36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVL--PEK-----EEKVVAIKKGDGIALPFGVVTWWYNKEDTE  107 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~--~~~-----~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~  107 (356)
                      .+...++.|.||+.+.||.- .-++.+..+|..++-+--  +.+     ....+.+++|+++++-...+|+..|.|+++
T Consensus        90 ~l~~vRlrL~PG~~I~~HrD-~~~l~~~~~~~~RlHIPL~Tnp~~~f~vdg~~~~m~~GE~w~~d~~~~H~v~N~g~~~  167 (290)
T 1e5r_A           90 HLQMARSRNLKNAIVIPHRD-FVELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEIS  167 (290)
T ss_dssp             SEEEEEEEEEESEEEEEECC-C--------CBCCEEEECSCCTTEEEEETTEEECCCTTEEEECCTTSCEEEEESSSSC
T ss_pred             hhheEEEEeCCCCEeeCccC-ccccccccCCceEEEeeEecCCCcEEEECCEEEecCCCCEEEEcCCCeeEEEcCCCCC
Confidence            34667779999999998842 224343345554443321  111     113489999999999999999999998873

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=93.86  E-value=0.18  Score=49.56  Aligned_cols=62  Identities=19%  Similarity=0.253  Sum_probs=48.4

Q ss_pred             cCCCcccCeee-C-CCEEEEEEeCeEEEEEEcCCC-------------------------ceEEEEEcCCCEEEeCCCcE
Q 018395           45 EKNGFALPHYC-D-SARVAYVLQGSGVAGIVLPEK-------------------------EEKVVAIKKGDGIALPFGVV   97 (356)
Q Consensus        45 ~Pg~~~~pH~h-~-a~e~~yVl~G~~~~~vv~~~~-------------------------~~~~~~l~~GDv~~iP~G~~   97 (356)
                      .+|+....|+. . +.-|..++.|+=+..++.|..                         +-....+++||+++||.|+.
T Consensus       204 p~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfIPsGWw  283 (451)
T 2yu1_A          204 VRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIPSGWI  283 (451)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEECTTCE
T ss_pred             cCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEeCCCce
Confidence            45666677776 3 456888999999998887652                         12357899999999999999


Q ss_pred             EEEEecCCC
Q 018395           98 TWWYNKEDT  106 (356)
Q Consensus        98 H~~~N~g~e  106 (356)
                      |++.|..++
T Consensus       284 H~V~nleds  292 (451)
T 2yu1_A          284 HAVYTPTDT  292 (451)
T ss_dssp             EEEECSSCE
T ss_pred             EEEecCCCe
Confidence            999998654

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=93.79  E-value=0.26  Score=45.05  Aligned_cols=81  Identities=12%  Similarity=0.156  Sum_probs=55.7

Q ss_pred             ccCceEEEEEEecCCCcc---cCeeeCC---C------EEEEE-Ee---CeEEEEEEcCCC-ceEEEEEcCCCEEEeCCC
Q 018395           33 RQGNIGAAKLALEKNGFA---LPHYCDS---A------RVAYV-LQ---GSGVAGIVLPEK-EEKVVAIKKGDGIALPFG   95 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~---~pH~h~a---~------e~~yV-l~---G~~~~~vv~~~~-~~~~~~l~~GDv~~iP~G   95 (356)
                      ....+-+..+ +.||+.-   +||.|+.   .      |++|- +.   |.+.-.+..+++ -..+..++-||++.+|.|
T Consensus       149 ~a~~LlvgEv-~tpgG~WSSyPpHkHd~~~~~~e~~lEE~YYf~~~~~~gf~~q~vyt~d~~~de~~~V~~~d~VlvP~G  227 (270)
T 2qjv_A          149 LADSLLVVEV-YTNAGATSSWPAHXHDTAVEGQETYLEETYYHRFNPPQGFCLQRVYTDDRSLDECMAVYNRDVVXVPXG  227 (270)
T ss_dssp             CCSSCEEEEE-EECTTCEESCSCEECEEEETTTEEECEEEEEEEEESTTCEEEEEEECTTSSSEEEEEEETTCEEEESSS
T ss_pred             CcceEEEEEE-EcCCCccccCCCcccccccCcccccceeEEEEECCCCCCEEEEEEeCCCCCCceEEEEECCCEEecCCC
Confidence            3445666655 8899877   9999943   4      88874 33   555555544433 235689999999999999


Q ss_pred             cEEEEEecCCCcEEEEEEee
Q 018395           96 VVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        96 ~~H~~~N~g~e~l~~l~i~~  115 (356)
                      . |-....-...+-+|.+.-
T Consensus       228 y-Hp~~a~pGy~~YylwvMa  246 (270)
T 2qjv_A          228 Y-HPVATIAGYDNYYLNVMA  246 (270)
T ss_dssp             B-CCEEECTTCEEEEEEEEE
T ss_pred             c-CCCcCCCCcccEEEEEEE
Confidence            9 986654344466777664

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=93.74  E-value=0.086  Score=50.88  Aligned_cols=64  Identities=16%  Similarity=0.191  Sum_probs=49.3

Q ss_pred             EEecC-CCcccCeee--CCCEEEEEEeCeEEEEEEcCCC-------------------------ceEEEEEcCCCEEEeC
Q 018395           42 LALEK-NGFALPHYC--DSARVAYVLQGSGVAGIVLPEK-------------------------EEKVVAIKKGDGIALP   93 (356)
Q Consensus        42 ~~l~P-g~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~-------------------------~~~~~~l~~GDv~~iP   93 (356)
                      +-+.| |+....|+.  ...-|..+++|+=+..++.|..                         +-....+++||+++||
T Consensus       179 l~mGp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~~~~e~~~~~~~~~~~~v~l~pGe~lfIP  258 (397)
T 3kv9_A          179 CLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVP  258 (397)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEEEEEETTCEEEEC
T ss_pred             EEEcCCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCCCcchhhhccccCceEEEEECCCCEEEeC
Confidence            44444 666777887  3445788999999998887741                         1235789999999999


Q ss_pred             CCcEEEEEecCC
Q 018395           94 FGVVTWWYNKED  105 (356)
Q Consensus        94 ~G~~H~~~N~g~  105 (356)
                      +|+.|+..|..+
T Consensus       259 sGW~H~V~nled  270 (397)
T 3kv9_A          259 TGWIHAVLTSQD  270 (397)
T ss_dssp             TTCEEEEEEEEE
T ss_pred             CCCeEEccCCcC
Confidence            999999999754

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=93.66  E-value=4.2  Score=37.27  Aligned_cols=57  Identities=16%  Similarity=0.183  Sum_probs=41.2

Q ss_pred             EEEecCCCcccCeee-CCCEEEE-EEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEe
Q 018395           41 KLALEKNGFALPHYC-DSARVAY-VLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYN  102 (356)
Q Consensus        41 ~~~l~Pg~~~~pH~h-~a~e~~y-Vl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N  102 (356)
                      .++|+++....-.|. ...|+++ .+.|++.+.+   ++  .+++|..-|.+|+|.|.......
T Consensus        61 ~l~L~~~~~~~~~~fl~~rE~~iV~lgG~~~V~v---dg--~~f~lg~~dalYVp~G~~~v~~a  119 (289)
T 1ywk_A           61 ELEIILDKELGVDYFLERRELGVINIGGPGFIEI---DG--AKETMKKQDGYYIGKETKHVRFS  119 (289)
T ss_dssp             CEECCCSGGGTSSSTTTTEEEEEEECSSCEEEEE---TT--EEEEECTTCEEEECTTCCCEEEE
T ss_pred             eEEcCCCceecccccCCCcEEEEEEccCeEEEEE---CC--EEEecCCCCEEEeCCCCeEEEEE
Confidence            477877776666665 5566555 5678999986   33  34799999999999997655444

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=93.65  E-value=0.16  Score=48.03  Aligned_cols=65  Identities=12%  Similarity=0.007  Sum_probs=49.4

Q ss_pred             EEEecC-CCcccCeee-CC-CEEEEEEeCeEEEEEEcCCC---------------------------------------c
Q 018395           41 KLALEK-NGFALPHYC-DS-ARVAYVLQGSGVAGIVLPEK---------------------------------------E   78 (356)
Q Consensus        41 ~~~l~P-g~~~~pH~h-~a-~e~~yVl~G~~~~~vv~~~~---------------------------------------~   78 (356)
                      .+-+.| |+....|+. .. .-+..++.|+=++.++.|..                                       +
T Consensus       175 ~~~~G~~gs~t~~H~D~~~~~~~~~~v~G~K~~~L~pP~~~~~ly~~~~~~~~~~~~~~~~w~~~~~P~~~~~~~p~~~~  254 (336)
T 3k2o_A          175 WFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFK  254 (336)
T ss_dssp             EEEEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSCGGGC
T ss_pred             EEEECCCCccCCcccCCCccceeeEEEeeeEEEEEeCCCcchhcccCcccccCCCccchhhhhhhhCcchhhhcccccCc
Confidence            345555 566678887 33 46999999999988876641                                       0


Q ss_pred             eEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395           79 EKVVAIKKGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        79 ~~~~~l~~GDv~~iP~G~~H~~~N~g~  105 (356)
                      .....+++||++++|+|+.|+..|.++
T Consensus       255 ~~~~~l~pGd~l~iP~gw~H~v~~~~~  281 (336)
T 3k2o_A          255 PLEILQKPGETVFVPGGWWHVVLNLDT  281 (336)
T ss_dssp             CEEEEECTTCEEEECTTCEEEEEESSC
T ss_pred             eEEEEECCCCEEEeCCCCcEEEecCCC
Confidence            124789999999999999999999875

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=93.20  E-value=0.37  Score=41.99  Aligned_cols=72  Identities=10%  Similarity=0.111  Sum_probs=51.1

Q ss_pred             EEEEEEecCCCcccCeee-CCCEE----EEEEeC-eEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           38 GAAKLALEKNGFALPHYC-DSARV----AYVLQG-SGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        38 ~~~~~~l~Pg~~~~pH~h-~a~e~----~yVl~G-~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      ++....|.||+.+.||.- ..-.+    ..++-. .+.+.+   ++  ..+..++|+++++.-...|+..|.++++ +++
T Consensus       103 ~a~fs~L~pG~~I~pH~g~~n~~lR~HL~L~~p~~~~~i~V---~~--~~~~w~eGe~~~fDds~~Hev~N~~d~~-Rvv  176 (197)
T 3rcq_A          103 QIKYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKIRC---AN--ETKTWEEGKVLIFDDSFEHEVWQDASSF-RLI  176 (197)
T ss_dssp             EEEEEEECTTEEEEEECCSCTTEEEEEEEEECCSSSEEEEE---TT--EEECCCBTCEEEECTTSCEEEEECSSSC-EEE
T ss_pred             eEEEEEeCCCCCcCCeeCCCCCeEEEEEEEEeCCCCcEEEE---CC--EEEEeeCCcEEEEcCCeEEEEEECCCCC-EEE
Confidence            578899999999999987 32222    122222 344443   22  3489999999999999999999998884 444


Q ss_pred             EEee
Q 018395          112 FLGD  115 (356)
Q Consensus       112 ~i~~  115 (356)
                      .+++
T Consensus       177 L~~D  180 (197)
T 3rcq_A          177 FIVD  180 (197)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4455

>3m3i_A Putative uncharacterized protein; PFAM:PF06172, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP; 2.35A {Leishmania major}

Probab=93.08  E-value=3.3  Score=36.50  Aligned_cols=132  Identities=14%  Similarity=0.087  Sum_probs=81.5

Q ss_pred             CCCcEEEEeCCCCCC------CccccCceeEEEEecCCCeecccccccCCeeEEEEEece-EEEEEEccCCc--------
Q 018395          202 KNGGRVVLLNTKNLP------LVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGS-GRAQIVGPDGK--------  266 (356)
Q Consensus       202 ~~gG~~~~~~~~~~p------~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~-~~~~iv~~~g~--------  266 (356)
                      +.||+.++.......      .-+. ..+.-..-|.+|..  =|||...+.|+-+...|. .++.++.++|+        
T Consensus        34 PEGG~yrEt~Rs~~~v~~~~~~~R~-~~TaIYfLL~~g~~--S~~HRv~sdEiW~~h~G~pL~l~li~~dG~~~~~~~~~  110 (225)
T 3m3i_A           34 PEGGYYSEVVRSAHKVDNEEGNRRH-AYTTIYFLCTPESP--SHLHRLCSDETWMYHAGDPLQLHVILKDPQDEDRIAAQ  110 (225)
T ss_dssp             TTSSEEEEEEECSSEEECTTSCEEE-SCEEEEEEECSSSC--EEEEECSSEEEEEEEEESCEEEEEEESSSTTTTC----
T ss_pred             CCCceEEEEEECCCcccCCCCCCcc-cceeEEEEecCCCC--cccEEecCCEEEEEECCCCEEEEEEcCCCccccccccc
Confidence            346666665544321      1111 23455566788885  488877799999999997 58889998882        


Q ss_pred             -------------------eEEEE----EecCCc--EEEEcCCcEEEEe-eCCC-----CeEEEEEEcCCCCceeccccc
Q 018395          267 -------------------RVLET----TVKAGN--LFIVPRFYVVSKI-ADPD-----GLAWFSIITTPNPIFTHLAGS  315 (356)
Q Consensus       267 -------------------~~~~~----~l~~Gd--v~vvP~g~~h~~~-~~~~-----~~~~~~~~~~~~p~~~~laG~  315 (356)
                                         ..-..    ++.+|+  .++||+|.+..-. .+++     +..+++..-+.  +|.|-   
T Consensus       111 ~~~~P~~~~~~~~~~~~~~~~~~~~LG~d~~~Ge~pQ~vVP~G~WqaA~~~~~~~~~~~~~sLVsCtVaP--GFdF~---  185 (225)
T 3m3i_A          111 PPAAPQAETDTADARPKYQVYRRVLVGARVERGELLQYTVPGGAIFGSSVAADGADGQAGYSLVSCIVSP--GFDYR---  185 (225)
T ss_dssp             --------------CCSSCEEEEEEESSCGGGTCBSEEEECTTCEEEEECCSSSTTCSSSCEEEEEEEES--CCCGG---
T ss_pred             ccccccccccccccccccCceEEEEeCCCccCCceeEEEeCCCEEEEEEECCCCcCcCCCeEEEEEEEcC--Cccch---
Confidence                               22222    345676  5699999987753 2322     45666544333  33321   


Q ss_pred             cccccCCCHHHHHHHcCCCHHHHHHHHh
Q 018395          316 IGTWKSLSPSVLEAAFNVPSDVEKQFRS  343 (356)
Q Consensus       316 ~s~l~~~p~~vl~~af~~~~~~~~~l~~  343 (356)
                        =|.-++.+-|.+.|.--++.+++|-.
T Consensus       186 --DFel~~~~~L~~~~P~~~~~I~~lt~  211 (225)
T 3m3i_A          186 --DFEIFTQAQLMELYPQHEAVIKQMAY  211 (225)
T ss_dssp             --GCEECBHHHHHHHCGGGHHHHHHHSB
T ss_pred             --hcEecCHHHHHHHCchHHHHHHHhch
Confidence              12224677778888777788888854

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=92.91  E-value=0.15  Score=50.68  Aligned_cols=64  Identities=23%  Similarity=0.245  Sum_probs=48.9

Q ss_pred             EecCCCcccCeee--CCCEEEEEEeCeEEEEEEcCCC-------------------------ceEEEEEcCCCEEEeCCC
Q 018395           43 ALEKNGFALPHYC--DSARVAYVLQGSGVAGIVLPEK-------------------------EEKVVAIKKGDGIALPFG   95 (356)
Q Consensus        43 ~l~Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~-------------------------~~~~~~l~~GDv~~iP~G   95 (356)
                      --..|+....|+-  ...-|..|++|+=+.-++.|..                         ......+++||+++||+|
T Consensus       302 mg~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~~~~~wfgd~l~~~~~~v~l~pGEtlfIPsG  381 (528)
T 3pur_A          302 AGMAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIPAG  381 (528)
T ss_dssp             EECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSSCCSCCGGGGTTTCCEEEEEETTCEEEECTT
T ss_pred             EeCCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCCchhhhhcccccccEEEEEECCCCEEEecCC
Confidence            3355667778876  4456888999999998887751                         113478999999999999


Q ss_pred             cEEEEEecCCC
Q 018395           96 VVTWWYNKEDT  106 (356)
Q Consensus        96 ~~H~~~N~g~e  106 (356)
                      +.|.++|..+.
T Consensus       382 W~HaV~tleDS  392 (528)
T 3pur_A          382 WIHAVLTPVDS  392 (528)
T ss_dssp             CEEEEEEEEEE
T ss_pred             ceEEEecCCCe
Confidence            99999997543

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=92.90  E-value=0.22  Score=49.51  Aligned_cols=63  Identities=13%  Similarity=0.168  Sum_probs=50.9

Q ss_pred             cCCCeecccccccCCeeEEEEEeceEEEEEEccCC------------------------ceEEEEEecCCcEEEEcCCcE
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG------------------------KRVLETTVKAGNLFIVPRFYV  286 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g------------------------~~~~~~~l~~Gdv~vvP~g~~  286 (356)
                      ..|+....|.-+.+++-|..|++|+=++-++.|.-                        ...+...+++||+++||.||+
T Consensus       304 ~~gS~Td~HiD~~gts~w~~v~~GrK~w~L~PPt~~nl~~y~~w~~s~~~~~wfgd~l~~~~~~v~l~pGEtlfIPsGW~  383 (528)
T 3pur_A          304 MAGSYTDFHVDFGGSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKEGQTLLIPAGWI  383 (528)
T ss_dssp             CTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSSCCSCCGGGGTTTCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCeeECCCCCceeEEEecceEEEEEeCCCccchhhhhhhccCCchhhhhcccccccEEEEEECCCCEEEecCCce
Confidence            45777789999886678999999999998888841                        123456899999999999999


Q ss_pred             EEEeeCC
Q 018395          287 VSKIADP  293 (356)
Q Consensus       287 h~~~~~~  293 (356)
                      |+..+..
T Consensus       384 HaV~tle  390 (528)
T 3pur_A          384 HAVLTPV  390 (528)
T ss_dssp             EEEEEEE
T ss_pred             EEEecCC
Confidence            9986643

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=92.06  E-value=0.74  Score=44.99  Aligned_cols=204  Identities=12%  Similarity=-0.028  Sum_probs=107.6

Q ss_pred             Ceee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCC-CCCCCceeEEe
Q 018395           52 PHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSK-GHKAGEFTNFF  129 (356)
Q Consensus        52 pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~-~~~pg~~~~f~  129 (356)
                      .-++ ++++++|+.+|++++.-  +-|   ...+++||+++||+|+.+.+.=.+  +.+...+-..+. +.-|..=    
T Consensus       172 ~f~NaDGD~Livpq~G~l~i~T--EfG---~L~v~pgei~VIPRGi~frv~l~~--p~Rgyi~E~~g~~f~LP~lG----  240 (471)
T 1eyb_A          172 CFYNSDGDFLIVPQKGNLLIYT--EFG---KMLVQPNEICVIQRGMRFSIDVFE--ETRGYILEVYGVHFELPDLG----  240 (471)
T ss_dssp             EEEESSEEEEEEEEESCEEEEE--TTE---EEEECTTEEEEECTTCCEEEECSS--SEEEEEEEEESCCEECCCCG----
T ss_pred             eeecCCCCEEEEEEeCCEEEEE--ecc---cEEeccCCEEEECCccEEEEeeCC--CceEEEEEccCCcccccccc----
Confidence            3356 89999999999999964  223   268999999999999999886554  555554432221 2333210    


Q ss_pred             ecccccccccCcHHHHHhhccCCHHHHHHhhcccC--CceEEEcCCCCcC----CCCC-----cccCCCceeeccCCCCC
Q 018395          130 LTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQT--GKGIVKLDANAKL----PEPK-----KEHRDGMAFNCEEAPLD  198 (356)
Q Consensus       130 lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~--~~~iv~~~~~~~~----~~p~-----~~~~~~~~~~l~~~~~~  198 (356)
                      .-|+++...  ++|     |..+..-.+.-  ...  -.+++|...+...    -.|-     ...-.+++|||..=.|.
T Consensus       241 piGanglan--~RD-----F~~PvA~~ed~--~~~~~~~vv~K~~G~l~~~~~~hsPfDVVaWhGn~~PYkydl~~F~pI  311 (471)
T 1eyb_A          241 PIGANGLAN--PRD-----FLIPIAWYEDR--QVPGGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYKYNLKNFMVI  311 (471)
T ss_dssp             GGTTSCBSC--GGG-----EEEECCCCCCC--EEEEEEEEEEEETTEEEEEEEEECSCCEEEEEESCCCEEEEGGGCBCC
T ss_pred             ccccCCccC--hhh-----ccCcccccccc--CCCccEEEEEEeCCeeEEEecCCCCceEEeEcCcccCeEechHHcccc
Confidence            002111111  222     11111111100  011  1245554432210    1232     12235678888853332


Q ss_pred             cc------cCCCcEEEEeCCCCCCCccccCceeE----EEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceE
Q 018395          199 VD------IKNGGRVVLLNTKNLPLVGEVGCGAD----LVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRV  268 (356)
Q Consensus       199 ~~------~~~gG~~~~~~~~~~p~l~~l~~s~~----~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~  268 (356)
                      ..      .+.--.+.++. .+-|...-  ++..    |-...++++++|.||.|-.+|+++.+.|.-..        | 
T Consensus       312 ~svs~dH~dPSIftVltap-s~~pg~av--~dFViFpPRw~v~e~TfrpPyyHrNv~SEfmgli~G~y~a--------k-  379 (471)
T 1eyb_A          312 NSVAFDHADPSIFTVLTAK-SVRPGVAI--ADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEA--------K-  379 (471)
T ss_dssp             CCSSSSCCCGGGGEEEEEE-CSSTTCEE--EEEEEECSEEECCSSSCCSCCCBCCSCEEEEEECCC--------------
T ss_pred             cccccccCCCCcceEEEcc-CCCCCceE--EeEeecCCccCCCCCccCCCCCccchhhhhhhhccccccc--------c-
Confidence            10      11111223332 12333221  2222    33678999999999999788899999996422        1 


Q ss_pred             EEEEecCCcEEEEcCCcEEE
Q 018395          269 LETTVKAGNLFIVPRFYVVS  288 (356)
Q Consensus       269 ~~~~l~~Gdv~vvP~g~~h~  288 (356)
                       ...+.+|.+-.=|.+.+|=
T Consensus       380 -~~Gf~pGg~SLH~~~~pHG  398 (471)
T 1eyb_A          380 -QGGFLPGGGSLHSTMTPHG  398 (471)
T ss_dssp             ----CCTTCEEEECTTCCBC
T ss_pred             -ccCcCCCceeccCCCcCCC
Confidence             1237888888888888884

>1znp_A Hypothetical protein ATU3615; NESG, ATR55, Q8U9W0, structural genomics, PSI, protein struc initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16

Probab=91.94  E-value=3.4  Score=34.32  Aligned_cols=100  Identities=14%  Similarity=0.034  Sum_probs=63.1

Q ss_pred             CCCcEEEEeCCCCCCCccccCceeEEEEecCCCeeccccccc-CCeeEEEEEece-EEEEEEccCCce---EEEEEecCC
Q 018395          202 KNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCD-SALQVTYIVRGS-GRAQIVGPDGKR---VLETTVKAG  276 (356)
Q Consensus       202 ~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~-~A~ei~~v~~G~-~~~~iv~~~g~~---~~~~~l~~G  276 (356)
                      +.||+.++........-+.. .++-..-|.+|...  |||.. .+.|+-+-..|. .++.++.++|..   ++-.++..|
T Consensus        20 PEGG~yrEt~Rs~~~~~R~~-~TaIYfLL~~g~~S--~wHRv~~sdEiW~~h~G~pL~l~~~~~dg~~~~~~LG~d~~~G   96 (154)
T 1znp_A           20 PEGGFYHQTFRDKAGGERGH-STAIYYLLEKGVRS--HWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILEG   96 (154)
T ss_dssp             TTSSEEEEEEECSSSTTTCS-CEEEEEEEESSCCE--EEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTTT
T ss_pred             CCCccEEEEEeCCCCCCCcc-eeEEEEEecCCCCC--cceeccCCCEEEEeECCCCEEEEEEcCCCcEEEEEeCCCcccC
Confidence            45777776665433222222 33444457788765  78775 599999999996 788889888742   111155678


Q ss_pred             cE--EEEcCCcEEEEeeCCCCeEEEEEEcCC
Q 018395          277 NL--FIVPRFYVVSKIADPDGLAWFSIITTP  305 (356)
Q Consensus       277 dv--~vvP~g~~h~~~~~~~~~~~~~~~~~~  305 (356)
                      ++  ++||+|.+..-... .+..+++..-+.
T Consensus        97 e~pQ~vVP~G~WqaA~~~-g~~~LVsCtVaP  126 (154)
T 1znp_A           97 ERPQVIVPANCWQSAESL-GDFTLVGCTVSP  126 (154)
T ss_dssp             EESEEEECTTCEEEEEES-SSEEEEEEEESS
T ss_pred             cccEEEEcCCEEEEeeEC-CCeEEEEEEecC
Confidence            75  79999998765322 355566554333

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=91.68  E-value=2  Score=32.68  Aligned_cols=69  Identities=9%  Similarity=-0.030  Sum_probs=51.1

Q ss_pred             eEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           37 IGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        37 ~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      -......+.||.   -++. .+.|++-|++|.+++.+  |+..+. ...++||.|.+|++...-+.-.  +....+|-
T Consensus        23 ~~~TvGVm~pGe---ytF~T~~~E~M~vvsG~~~V~l--pg~~ew-~~~~aGesF~Vpans~F~l~v~--~~~~YlC~   92 (94)
T 2oyz_A           23 QDVSVGVMLPGE---YTFGTQAPERMTVVKGALVVKR--VGEADW-TTYSSGESFDVEGNSSFELQVK--DATAYLCE   92 (94)
T ss_dssp             EEEEEEEECSEE---EEEEESSCEEEEEEESEEEEEE--TTCSSC-EEEETTCEEEECSSEEEEEEES--SCEEEEEE
T ss_pred             CCEEEEEEeceE---EEEcCCCeEEEEEEEeEEEEEc--CCCCcC-EEECCCCEEEECCCCEEEEEEc--ccEeEEEE
Confidence            344556677775   4455 89999999999999986  333223 7999999999999999888764  34666663

>1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region; jelly roll motif, cupin superfamily, structural genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae} SCOP: b.82.1.16 PDB: 1xe8_A*

Probab=91.02  E-value=7.3  Score=33.84  Aligned_cols=107  Identities=17%  Similarity=0.186  Sum_probs=64.7

Q ss_pred             eeEEEEecCCC-eecccccccCCeeEEEEEeceEEEEEEccCCceEEEE----EecCCc--EEEEcCCcEEEEeeC-CCC
Q 018395          224 GADLVRLDGKA-MCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLET----TVKAGN--LFIVPRFYVVSKIAD-PDG  295 (356)
Q Consensus       224 s~~~v~l~~g~-~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~----~l~~Gd--v~vvP~g~~h~~~~~-~~~  295 (356)
                      +.-..-|.+++ +.  |||...+.|+-+-..|....-++.++|.. -+.    ++..|+  .++||+|++..-... .+.
T Consensus        80 TaIYfLL~~~~~~S--~wHRv~sdEiW~~h~G~p~~~li~~dg~~-~~~~LG~dl~~Ge~pQ~vVPaG~WqaA~~~~~~~  156 (203)
T 1xe7_A           80 TLIYYLLTPDSPIG--KFHKNINRIIHILQRGKGQYVLVYPDGQV-KSFKVGFDYKNGEVSQWVVPGGVFKASFLLPNEE  156 (203)
T ss_dssp             EEEEEEEBTTBCEE--EEEEESSCEEEEEEEECEEEEEECTTSCE-EEEEESSCGGGTCBSEEEECTTCEEEEEECCCTT
T ss_pred             eEEEEEEcCCCCcc--cceeeCCCEEEEEEcCCccEEEEcCCCCE-EEEEeCCCcccCcccEEEEcCCEEEEeEecCCCC
Confidence            34445578786 44  88876699999999997776788888742 122    455576  379999998776322 222


Q ss_pred             e---EEEEEEcCCCCceeccccccccccCCCHH-HHHHHcCCCHHHHHHHH
Q 018395          296 L---AWFSIITTPNPIFTHLAGSIGTWKSLSPS-VLEAAFNVPSDVEKQFR  342 (356)
Q Consensus       296 ~---~~~~~~~~~~p~~~~laG~~s~l~~~p~~-vl~~af~~~~~~~~~l~  342 (356)
                      .   .+++..-+.  ++.|-     =+.-.+.+ -|.+.|.  .+.++.|+
T Consensus       157 ~~~~tLVgCtVaP--GFdF~-----dFel~~~~~~L~~~~P--~~~~~~l~  198 (203)
T 1xe7_A          157 FDNGFLISEVVVP--GFDFE-----DHTFLKGEDELKHLVG--PEKAAELA  198 (203)
T ss_dssp             TTTCEEEEEEESS--CCCGG-----GEEECCHHHHHHHHHC--HHHHHHTG
T ss_pred             cccceEEEEEecC--Cccch-----hcEecCCcHHHHHHCC--HHHHHHHH
Confidence            2   455554333  33321     11223555 6666664  55566654

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=90.20  E-value=2.1  Score=38.69  Aligned_cols=70  Identities=14%  Similarity=0.140  Sum_probs=52.9

Q ss_pred             EEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCC--cEEEEee-CC-CCeEEEEEE
Q 018395          227 LVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRF--YVVSKIA-DP-DGLAWFSII  302 (356)
Q Consensus       227 ~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g--~~h~~~~-~~-~~~~~~~~~  302 (356)
                      ...+.||+=+.||-|.+ -..+.||++|+..  --|+.|+.   ..+++|||-.+-+|  ..|...+ .. +.++++-+.
T Consensus        68 ~~~~~pg~gf~~HPHrg-~EtvTyvl~G~~~--H~DS~Gn~---~~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~lQlW  141 (256)
T 2vec_A           68 QEVLAPGAAFQPRTYPK-VDILNVILDGEAE--YRDSEGNH---VQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLW  141 (256)
T ss_dssp             EEEECTTCEEEEECCSS-EEEEEEEEESEEE--EEETTSCE---EEEETTEEEEECCCTTCCEEEEECCSSSCEEEEEEE
T ss_pred             ccccCCCCccCCcCCCC-cEEEEEEEeeEEE--EEeCCCCE---EEECCCeEEEEECCCCeEEEEEECCCCceEEEEEEE
Confidence            45678888889999986 5558899999854  45777765   57999999999665  5888855 33 568877664

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=89.53  E-value=1.2  Score=43.56  Aligned_cols=66  Identities=12%  Similarity=0.128  Sum_probs=44.4

Q ss_pred             ceEEEEEEec--CCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec
Q 018395           36 NIGAAKLALE--KNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK  103 (356)
Q Consensus        36 ~~~~~~~~l~--Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~  103 (356)
                      .+++.++++.  +++....--..+..+++|++|++++..  .++......|++||++++|++..-.+.+.
T Consensus       356 eF~v~~~~~~~~~~~~~~~~~~~~~~illv~~G~g~i~~--~~~~~~~~~l~~G~~~fvpa~~~~~i~g~  423 (440)
T 1pmi_A          356 EFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQI--TGDDSTKQKIDTGYVFFVAPGSSIELTAD  423 (440)
T ss_dssp             SCEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEE--TTCGGGCEEEETTCEEEECTTCCEEEEEC
T ss_pred             eEEEEEEEecCCCCceeEEecCCCcEEEEEEeCeEEEEe--CCcccceEEeccCCEEEEeCCCcEEEEEe
Confidence            5778888887  453221112278899999999999975  11101015899999999999955555554

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=89.05  E-value=4.2  Score=36.33  Aligned_cols=70  Identities=17%  Similarity=0.160  Sum_probs=53.3

Q ss_pred             EEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCC--cEEEEee-C-CCCeEEEEEE
Q 018395          227 LVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRF--YVVSKIA-D-PDGLAWFSII  302 (356)
Q Consensus       227 ~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g--~~h~~~~-~-~~~~~~~~~~  302 (356)
                      .-.+.||+=+.||=|.+ =..+.||++|+.  +=-|+.|+.   ..+++|||-.+-+|  ..|...+ . .+.++++=+.
T Consensus        45 ~d~i~pg~gf~~HPHrg-~EtvTyvl~G~~--~H~DS~Gn~---~~i~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~lQlW  118 (242)
T 1tq5_A           45 DDVIEAGQGFGTHPHKD-MEILTYVLEGTV--EHQDSMGNK---EQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIW  118 (242)
T ss_dssp             EEEECTTCEEEEEEECS-CEEEEEEEESEE--EEEESSSCE---EEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEE
T ss_pred             cceeCCCCcCCCcCCCC-cEEEEEEEEeEE--EEEeCCCCc---EEECCCcEEEEECCCCcEEEEEcCCCCCeEEEEEEE
Confidence            45688887789999987 666999999985  445777766   57999999999555  7788755 3 3568877664

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=89.03  E-value=2.8  Score=38.57  Aligned_cols=77  Identities=12%  Similarity=0.060  Sum_probs=52.8

Q ss_pred             cCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      ...+.+..++|+||+....... .-.-++||++|++.+.     +......+.++.++++..|..-.+.|..+++++++.
T Consensus       166 ~~~~~~~~~~l~~g~~~~~~l~~~~~~~lyv~~G~v~v~-----g~~~~~~~~~~~~~~l~~gd~~~i~~~a~~~a~~LL  240 (290)
T 1j1l_A          166 RTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIG-----PDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVL  240 (290)
T ss_dssp             SSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEES-----CTTSCEEECTTEEEEECSCSEEEEECCSSSCEEEEE
T ss_pred             cCCcEEEEEEECCCCEEEeecCCCCEEEEEEEeCeEEEC-----CcccceeccCceEEEecCCCEEEEEEcCCCCcEEEE
Confidence            4567888899999997754444 4567999999999873     211113567777777777776666664455677776


Q ss_pred             Eee
Q 018395          113 LGD  115 (356)
Q Consensus       113 i~~  115 (356)
                      +.-
T Consensus       241 l~G  243 (290)
T 1j1l_A          241 IAG  243 (290)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            544

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A

Probab=88.22  E-value=1.8  Score=38.00  Aligned_cols=76  Identities=12%  Similarity=0.146  Sum_probs=50.0

Q ss_pred             EEEecCCCeecccccccCCee-EEEEEe--ceEEEEEEccCC-----------------ceEEEEEecCCcEEEEcCCcE
Q 018395          227 LVRLDGKAMCSPGFSCDSALQ-VTYIVR--GSGRAQIVGPDG-----------------KRVLETTVKAGNLFIVPRFYV  286 (356)
Q Consensus       227 ~v~l~~g~~~~PH~h~~~A~e-i~~v~~--G~~~~~iv~~~g-----------------~~~~~~~l~~Gdv~vvP~g~~  286 (356)
                      ...+.+|+...+|.|+++--. +.|+-.  +.+.+.|.+|..                 +....-.-++||+++||.-+.
T Consensus       107 ~~~~~~G~~~~~H~H~~~~lSgV~Yl~~p~~~G~L~f~~p~~~~~~~~~~~~~~~~~~~~~~~~i~P~~G~lvlFpS~l~  186 (216)
T 2rg4_A          107 INILPEGGVHGSHIHPHSVISGTTYVAMPEGTSALKLEDPRLPFMMAAPTRRKGAREELRTFRSVAPKVGDVLLWESWLR  186 (216)
T ss_dssp             EEEECTTCCEEEECCTTCSEEEEEEEECCSCSCCEEEECTTGGGCSSSCCCCCCSCGGGCSEEEECCCTTEEEEEETTSC
T ss_pred             EEEcCCCCcccCccCCCCeEEEEEEEECCCCCccEEEeCCccccccccCcccccCcccCCCeeEecCCCCeEEEECCCCE
Confidence            346688999999999873222 233333  356777777631                 112234678999999999999


Q ss_pred             EEEee--CCCCeEEEEEE
Q 018395          287 VSKIA--DPDGLAWFSII  302 (356)
Q Consensus       287 h~~~~--~~~~~~~~~~~  302 (356)
                      |....  +++.-.-++|+
T Consensus       187 H~V~p~~~~~~RiSIsFN  204 (216)
T 2rg4_A          187 HEVPMNMAEEDRISVSFN  204 (216)
T ss_dssp             EEECCCCSSSCEEEEEEE
T ss_pred             EeccCCCCCCCEEEEEEE
Confidence            99843  44455556665

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=87.65  E-value=4  Score=37.26  Aligned_cols=72  Identities=18%  Similarity=0.252  Sum_probs=51.5

Q ss_pred             cCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCC-C----cEEEEEecCCCc
Q 018395           34 QGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF-G----VVTWWYNKEDTE  107 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~-G----~~H~~~N~g~e~  107 (356)
                      ...+.+..++|+||+....... .-.-++||++|++.+.     +..  ..|.+||.+++.. |    ..-.+.+..  +
T Consensus       164 ~~~~~~~~~~L~~g~~~~~~~~~~~~~~lyv~~G~v~v~-----g~~--~~l~~~d~~~~~~~~~~~~~~l~l~a~~--~  234 (277)
T 2p17_A          164 IVPVTMVEMIVEPGTTVVQDLPGHYNGFLYILEGSGVFG-----ADN--IEGKAGQALFFSRHNRGEETELNVTARE--K  234 (277)
T ss_dssp             SSCEEEEEEEECTTCEEEEEEETTCEEEEEEEESEEEET-----TTT--EEEETTEEEEECCCCTTCEEEEEEEESS--S
T ss_pred             CCCCEEEEEEECCCCEEEeccCCCCEEEEEEEeCeEEEC-----CCc--eEeCCCcEEEEcCCCCCccceEEEEeCC--C
Confidence            4578888999999998765554 4567999999998772     211  3799999999986 6    555555543  4


Q ss_pred             EEEEEEe
Q 018395          108 LVVLFLG  114 (356)
Q Consensus       108 l~~l~i~  114 (356)
                      .+++.+.
T Consensus       235 a~~Ll~~  241 (277)
T 2p17_A          235 LRLLLYA  241 (277)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEe
Confidence            6666543

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=87.43  E-value=2.7  Score=41.07  Aligned_cols=87  Identities=11%  Similarity=0.038  Sum_probs=55.0

Q ss_pred             CcEEEEeCCCCCCCccccCceeEEEEecCCCe-ecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEc
Q 018395          204 GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAM-CSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVP  282 (356)
Q Consensus       204 gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~-~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP  282 (356)
                      -|..+.+...+ |.++. |+++.....+. +| ..--+|.+ +.+++|+-+|+++++  +.-| +   -.+++||+.|||
T Consensus       140 ~Gl~tl~gngD-~~~~~-G~aI~~y~~n~-sM~~~~f~NaD-GD~Livpq~G~l~i~--TEfG-~---L~v~pgei~VIP  209 (471)
T 1eyb_A          140 SGLHTLCGAGD-IKSNN-GLAIHIFLCNT-SMENRCFYNSD-GDFLIVPQKGNLLIY--TEFG-K---MLVQPNEICVIQ  209 (471)
T ss_dssp             TTEEEEEEESC-GGGTC-CEEEEEEEECS-CCCSEEEEESS-EEEEEEEEESCEEEE--ETTE-E---EEECTTEEEEEC
T ss_pred             cchhheeccCC-ccccc-ceEEEEEeCCC-CcccceeecCC-CCEEEEEEeCCEEEE--Eecc-c---EEeccCCEEEEC
Confidence            34444443333 33322 44443333333 55 34566888 999999999998776  4445 2   259999999999


Q ss_pred             CCcEEEEeeCCCCeEEEEE
Q 018395          283 RFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       283 ~g~~h~~~~~~~~~~~~~~  301 (356)
                      ||..+.+.-.. ++..+.+
T Consensus       210 RGi~frv~l~~-p~Rgyi~  227 (471)
T 1eyb_A          210 RGMRFSIDVFE-ETRGYIL  227 (471)
T ss_dssp             TTCCEEEECSS-SEEEEEE
T ss_pred             CccEEEEeeCC-CceEEEE
Confidence            99999885444 6655444

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=87.40  E-value=3.6  Score=37.13  Aligned_cols=69  Identities=17%  Similarity=0.213  Sum_probs=55.4

Q ss_pred             ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEE-EEEecCCCcEEEEEE
Q 018395           36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVT-WWYNKEDTELVVLFL  113 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H-~~~N~g~e~l~~l~i  113 (356)
                      +-+-.++.++|+--.++-.|.++--+||++|+..++     +    ..+.+|+-.++|+|+.- .+.-.|+++..+|.+
T Consensus        90 GaSTl~V~fpp~~~~P~Gi~~ad~E~fVL~G~i~~G-----~----~~l~~h~Y~f~PaGV~~~~~kv~~~~g~~iL~f  159 (303)
T 2qdr_A           90 GASTSRVVLPPKFEAPSGIFTADLEIFVIKGAIQLG-----E----WQLNKHSYSFIPAGVRIGSWKVLGGEEAEILWM  159 (303)
T ss_dssp             SCEEEEEEECTTCEECCBEESSCEEEEEEESEEEET-----T----EEECTTEEEEECTTCCBCCEEEETTSCEEEEEE
T ss_pred             CcceEEEEecCCCCCCCcccccceEEEEEEeEEEeC-----C----EEecCCceEEecCCCccCceeecCCCCcEEEEE
Confidence            556678999999999999996666699999999883     2    68999999999999743 233457777888875

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=87.11  E-value=9.2  Score=29.82  Aligned_cols=69  Identities=9%  Similarity=0.019  Sum_probs=51.2

Q ss_pred             EEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           39 AAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        39 ~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      .....+.||. .+-++. .+.|+.-|++|.+++.+  |+..+. ...++|+.|.+|++...-+.-.  +...++|-
T Consensus        39 kTlGVm~PGe-~~YtF~T~~~E~MevvsG~l~V~L--pg~~eW-~~~~aGesF~VpanssF~lkv~--~~~~Y~C~  108 (111)
T 3hqx_A           39 KTLGVILPTE-QPLTFETHVPERMEIISGECRVKI--ADSTES-ELFRAGQSFYVPGNSLFKIETD--EVLDYVCH  108 (111)
T ss_dssp             EEEEEECCCS-SCEEEECSSCEEEEEEESEEEEEE--TTCSSC-EEEETTCEEEECTTCEEEEECS--SCEEEEEE
T ss_pred             EEEEEEeccc-cceEEcCCCcEEEEEEEeEEEEEc--CCcccC-EEeCCCCEEEECCCCcEEEEEC--cceeEEEE
Confidence            3456677873 224555 89999999999999986  333233 6899999999999999888764  35667764

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=87.06  E-value=3.1  Score=33.04  Aligned_cols=61  Identities=15%  Similarity=0.022  Sum_probs=44.4

Q ss_pred             CCcccCeeeCCCE--EEEEEeCeEEEEEEcCCCc---eEEEEEcCCCEEEeCCCcEEEEEecCCCc
Q 018395           47 NGFALPHYCDSAR--VAYVLQGSGVAGIVLPEKE---EKVVAIKKGDGIALPFGVVTWWYNKEDTE  107 (356)
Q Consensus        47 g~~~~pH~h~a~e--~~yVl~G~~~~~vv~~~~~---~~~~~l~~GDv~~iP~G~~H~~~N~g~e~  107 (356)
                      -++...|-..+.-  .+-|++|+.+.....+++.   ....-+.+|+..++|+...|.+.-.+|..
T Consensus        26 ~~l~~~HnTK~GtWgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe~sdD~~   91 (119)
T 3dl3_A           26 EALLTHHNTAVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQ   91 (119)
T ss_dssp             HHHHSSBCCCTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCE
T ss_pred             HHHHhccCCCCcEEEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEEECCCeE
Confidence            3456666554444  4569999999987765543   24468899999999999999999555543

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=86.49  E-value=1.6  Score=42.07  Aligned_cols=57  Identities=12%  Similarity=0.161  Sum_probs=42.7

Q ss_pred             CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEE
Q 018395           35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTW   99 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~   99 (356)
                      ..+++.++++.++..   +.. ++..++.|++|++++..   ++  ....|++||++++|++..-+
T Consensus       322 ~~F~v~~~~l~~~~~---~~~~~~~~il~v~~G~~~l~~---~~--~~~~l~~G~~~fvpa~~~~~  379 (394)
T 2wfp_A          322 DDFAFSLHDLALQET---SIGQHSAAILFCVEGEAVLRK---DE--QRLVLKPGESAFIGADESPV  379 (394)
T ss_dssp             SSCEEEEEECCSSCE---EECCSSCEEEEEEEEEEEEEE---TT--EEEEECTTCEEEECGGGCCE
T ss_pred             CEEEEEEEEEcCCeE---EecCCCcEEEEEEeceEEEEE---CC--eEEEEccCcEEEEeCCCceE
Confidence            457788888876632   233 77899999999998864   22  34799999999999986433

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=86.18  E-value=2.7  Score=32.97  Aligned_cols=53  Identities=15%  Similarity=0.147  Sum_probs=42.0

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF  279 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~  279 (356)
                      +....+.+|-+.-..-- . +..+.+|++|.+++...+++|+...-..+.+||+|
T Consensus        28 ~~~~~~~~g~~i~~~g~-~-~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~   80 (149)
T 2pqq_A           28 MSEVTLARGDTLFHEGD-P-GDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELI   80 (149)
T ss_dssp             CEEEEECTTCEEECTTS-E-ECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEE
T ss_pred             ceEEEeCCCCEEECCCC-C-CCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEe
Confidence            45678888877643322 2 56799999999999999999988777799999987

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=85.89  E-value=4.5  Score=32.09  Aligned_cols=70  Identities=10%  Similarity=0.088  Sum_probs=48.3

Q ss_pred             CeecccccccCCeeEEEEEeceEEEEEEccCCc-e-EEEEEecCCcEEEEcCCcEEEEeeCCCCeEE-EEEEcC
Q 018395          234 AMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK-R-VLETTVKAGNLFIVPRFYVVSKIADPDGLAW-FSIITT  304 (356)
Q Consensus       234 ~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~-~-~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~-~~~~~~  304 (356)
                      +++.-|--..+....+-|++|+++..+.+.+|. . .-..-+.+|+..+||.-.+|.+. -+++++| +.|+..
T Consensus        27 ~l~~~HnTK~GtWgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe-~sdD~~f~leFyc~   99 (119)
T 3dl3_A           27 ALLTHHNTAVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIE-LSDDAQFNINFWSD   99 (119)
T ss_dssp             HHHSSBCCCTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEE-ECTTCEEEEEEEEC
T ss_pred             HHHhccCCCCcEEEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEE-ECCCeEEEEEEEEC
Confidence            355556422224556789999999999887664 1 11236789999999999999998 5566665 566543

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=85.43  E-value=1.5  Score=40.95  Aligned_cols=58  Identities=24%  Similarity=0.320  Sum_probs=41.6

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEE
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTW   99 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~   99 (356)
                      ..+++.++++.++....  ...+..++.|++|++++..   ++  ....|++||++++|++...+
T Consensus       249 ~~F~~~~~~~~~~~~~~--~~~~~~il~v~~G~~~l~~---~~--~~~~l~~G~~~~vpa~~~~~  306 (319)
T 1qwr_A          249 EYFSVYKWDINGEAEMA--QDESFLICSVIEGSGLLKY---ED--KTCPLKKGDHFILPAQMPDF  306 (319)
T ss_dssp             SSCEEEEEEEEEEEEEC--CCSSCEEEEEEEEEEEEEE---TT--EEEEEETTCEEEECTTCCCE
T ss_pred             CEEEEEEEEECCceEEc--cCCccEEEEEEcCeEEEEE---CC--EEEEEcCCcEEEEeCCCceE
Confidence            35677778877543221  1267889999999999864   23  24799999999999987433

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=83.90  E-value=4.4  Score=31.37  Aligned_cols=66  Identities=15%  Similarity=0.103  Sum_probs=47.4

Q ss_pred             EEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           39 AAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        39 ~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      .....|.||.   -++. .+.|++-|++|.+++.+  |+..+. ...++|+.|.+|++...-+.-.  +...++|
T Consensus        38 kTlGVm~PGe---Y~F~T~~~E~MevvsG~l~V~L--pG~~eW-~~~~aGesF~VpanssF~lkv~--~~t~Y~C  104 (106)
T 3eo6_A           38 HSLTLLHPGV---YTLSSEVAETIRVLSGMAYYHA--EGANDV-QELHAGDSMVIPANQSYRLEVM--EPLDYLL  104 (106)
T ss_dssp             EEEEEECSEE---EEECCSSCEEEEEEEEEEEEEC--TTCSSC-EEEETTCEEEECSSSCEEEEEE--EEEEEEE
T ss_pred             EEEEEEeeeE---EEecCCCcEEEEEEEeEEEEEC--CCCccC-EEECCCCEEEECCCCcEEEEEC--ceEEEEE
Confidence            3455666763   3445 89999999999999975  443333 6999999999999998877653  2344554

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=83.70  E-value=4.2  Score=33.73  Aligned_cols=75  Identities=11%  Similarity=-0.038  Sum_probs=50.4

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEE-Ec---CC--cEEEEeeCCCCeEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFI-VP---RF--YVVSKIADPDGLAW  298 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~v-vP---~g--~~h~~~~~~~~~~~  298 (356)
                      +....+.+|-+.---= -. +..+.+|++|.+++...+++|+...-..+.+||++- +.   .+  +.+...+ -+++++
T Consensus        30 ~~~~~~~~g~~l~~~G-~~-~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~~~~~~~~~~~~~a-~~~~~v  106 (194)
T 3dn7_A           30 FQLKKVRKKETLLKTG-EI-CRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPADFYIQS-VENCEL  106 (194)
T ss_dssp             CEEEEECTTCEEECTT-SB-CCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHHHHHTCBCSSEEEE-SSCEEE
T ss_pred             CEEEEEcCCCEEECCC-Ce-eeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHHHhcCCCCceEEEE-ECCEEE
Confidence            3566777877663221 22 568999999999999999999887777899999985 21   12  2222233 455666


Q ss_pred             EEEE
Q 018395          299 FSII  302 (356)
Q Consensus       299 ~~~~  302 (356)
                      +.+.
T Consensus       107 ~~i~  110 (194)
T 3dn7_A          107 LSIT  110 (194)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6664

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=83.13  E-value=4.4  Score=33.92  Aligned_cols=54  Identities=19%  Similarity=0.237  Sum_probs=41.9

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFI  280 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~v  280 (356)
                      +....+.+|-+.---- -. +..+.+|++|.+++...+++|+...-..+.+||+|=
T Consensus        13 ~~~~~~~~g~~i~~~g-~~-~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G   66 (207)
T 2oz6_A           13 CHRRRYTAKSTIIYAG-DR-CETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFG   66 (207)
T ss_dssp             SEEEEECTTCEEECTT-SB-CCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEES
T ss_pred             cceEEECCCCEEEcCC-CC-CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcc
Confidence            4566778887763222 22 567999999999999999999887777899999983

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=82.57  E-value=2.9  Score=32.59  Aligned_cols=54  Identities=9%  Similarity=0.068  Sum_probs=34.6

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEE---EEEecCCcEEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVL---ETTVKAGNLFI  280 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~---~~~l~~Gdv~v  280 (356)
                      +....+.+|-+.--- .-. +..+.+|++|.+++...+++|+...   -..+.+||+|=
T Consensus        29 ~~~~~~~~g~~i~~~-g~~-~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG   85 (142)
T 3mdp_A           29 SEEKSFPTGSVIFKE-NSK-ADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG   85 (142)
T ss_dssp             EEEEEECTTCEEECT-TSB-CCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred             hcEEecCCCCEEEeC-CCC-CCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence            566777888765322 223 6689999999999999998887665   56889999874

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=82.56  E-value=4.8  Score=33.93  Aligned_cols=75  Identities=11%  Similarity=-0.059  Sum_probs=51.2

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEE-----cCCcEEEEeeCCCCeEEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIV-----PRFYVVSKIADPDGLAWF  299 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vv-----P~g~~h~~~~~~~~~~~~  299 (356)
                      +....+.+|-+.-..= -. +..+.+|++|.+++...+++|+...-..+.+||+|=.     ..-+.+...+ .++++++
T Consensus        22 ~~~~~~~~g~~i~~~g-~~-~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a-~~~~~v~   98 (216)
T 4ev0_A           22 FQRRLYPQGKPIFYQG-DL-GQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSASAVA-VEDTELL   98 (216)
T ss_dssp             CEEEEECTTCEEECTT-CB-CCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHHHCCBCSSEEEE-SSSEEEE
T ss_pred             heEEEeCCCCEEEeCC-CC-CCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhcCCCCcceEEEE-cCCEEEE
Confidence            4567788887764322 22 5689999999999999999998877789999999832     1112223333 3456666


Q ss_pred             EEE
Q 018395          300 SII  302 (356)
Q Consensus       300 ~~~  302 (356)
                      .+.
T Consensus        99 ~i~  101 (216)
T 4ev0_A           99 ALF  101 (216)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            664

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=82.12  E-value=11  Score=33.48  Aligned_cols=79  Identities=10%  Similarity=0.039  Sum_probs=57.8

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEec-eEEEEEEccCC---------------ce-EEE----EEecCCcEEEE
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRG-SGRAQIVGPDG---------------KR-VLE----TTVKAGNLFIV  281 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G-~~~~~iv~~~g---------------~~-~~~----~~l~~Gdv~vv  281 (356)
                      -....+.+.+|=..+-|+|+. =.|=+++--| +..+++..+..               .+ .+.    -+|.||+-+-+
T Consensus       106 YaeK~Li~~~gQ~~P~H~H~~-K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl  184 (246)
T 3kmh_A          106 YAEKIMHVRDAQVTPMHFHWR-KREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESICL  184 (246)
T ss_dssp             EEEEEEEECBTCEEEEEEESS-CCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEEE
T ss_pred             ceeeEeeccCCCCCCcccCCC-ccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEec
Confidence            345667889999999999998 8888887776 66666665532               11 111    17899999999


Q ss_pred             cCCcEEEEeeCCC--CeEEEEEE
Q 018395          282 PRFYVVSKIADPD--GLAWFSII  302 (356)
Q Consensus       282 P~g~~h~~~~~~~--~~~~~~~~  302 (356)
                      |+|..|+..+..+  ++.+-.+.
T Consensus       185 ~Pg~~H~F~ae~g~G~vligEVS  207 (246)
T 3kmh_A          185 PPGLYHSFWAEAGFGDVLVGEVS  207 (246)
T ss_dssp             CTTEEEEEEECTTSCCEEEEEEE
T ss_pred             CCCCEEEEEecCCCccEEEEEcc
Confidence            9999999988766  45555553

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=82.11  E-value=4.8  Score=34.59  Aligned_cols=53  Identities=15%  Similarity=0.135  Sum_probs=41.8

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF  279 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~  279 (356)
                      +....+.+|-+.-.-=. . +..+.+|++|.+++...+++|+...-..+.+||+|
T Consensus        34 ~~~~~~~~g~~i~~~G~-~-~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~   86 (237)
T 3fx3_A           34 AVWRSYDRGETLFLQEE-K-AQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESF   86 (237)
T ss_dssp             CEEEEECTTCEEECTTS-C-CCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEE
T ss_pred             CEEEEECCCCEEEcCCC-c-cceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEe
Confidence            45667788877633222 2 56899999999999999999988777789999998

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=81.57  E-value=2.9  Score=32.81  Aligned_cols=53  Identities=13%  Similarity=0.150  Sum_probs=39.6

Q ss_pred             EEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceE-EEEEcCCCEEE
Q 018395           39 AAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEK-VVAIKKGDGIA   91 (356)
Q Consensus        39 ~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~-~~~l~~GDv~~   91 (356)
                      +...++++|......--.++.+++|++|.+.+...++++++. ...+.+||++-
T Consensus        28 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G   81 (149)
T 2pqq_A           28 MSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIG   81 (149)
T ss_dssp             CEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEES
T ss_pred             ceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEec
Confidence            357788888866443335678999999999998877766543 56889999873

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=81.51  E-value=5.6  Score=33.34  Aligned_cols=75  Identities=17%  Similarity=0.107  Sum_probs=51.0

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEc-----C-CcEEEEeeCCCCeEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVP-----R-FYVVSKIADPDGLAW  298 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP-----~-g~~h~~~~~~~~~~~  298 (356)
                      +....+.+|.+.-..=- . +..+.+|++|.+++...+++|+...-..+.+||+|=..     . -+.+...+ .+++++
T Consensus        19 ~~~~~~~~g~~i~~~g~-~-~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a-~~~~~v   95 (210)
T 3ryp_A           19 CHIHKYPSKSTLIHQGE-K-AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRA-KTACEV   95 (210)
T ss_dssp             SEEEEECTTCEEECTTS-B-CCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCSSEEEE-SSCEEE
T ss_pred             cEEEEeCCCCEEECCCC-C-CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCCCceEEEEE-CCcEEE
Confidence            45667788877643322 2 56899999999999999999988777789999998322     1 12223333 355666


Q ss_pred             EEEE
Q 018395          299 FSII  302 (356)
Q Consensus       299 ~~~~  302 (356)
                      +.+.
T Consensus        96 ~~i~   99 (210)
T 3ryp_A           96 AEIS   99 (210)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            6664

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=81.40  E-value=8.3  Score=29.21  Aligned_cols=68  Identities=19%  Similarity=0.124  Sum_probs=50.7

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      ....-+.||-   -++.+. +.|+.=|++|+.++.+-....=    .+.++||-|.||++.-.-+.. .+...+++.
T Consensus        25 ~TvGVm~pGe---ytF~T~-~~E~M~vvsG~~~V~lpg~~ew----~~~~aGesF~Vpans~F~l~v-~~~~~YlC~   92 (94)
T 2oyz_A           25 VSVGVMLPGE---YTFGTQ-APERMTVVKGALVVKRVGEADW----TTYSSGESFDVEGNSSFELQV-KDATAYLCE   92 (94)
T ss_dssp             EEEEEECSEE---EEEEES-SCEEEEEEESEEEEEETTCSSC----EEEETTCEEEECSSEEEEEEE-SSCEEEEEE
T ss_pred             EEEEEEeceE---EEEcCC-CeEEEEEEEeEEEEEcCCCCcC----EEECCCCEEEECCCCEEEEEE-cccEeEEEE
Confidence            4445567774   467887 9999999999999998765431    368899999999987666543 356777764

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=80.98  E-value=5.6  Score=33.86  Aligned_cols=54  Identities=13%  Similarity=0.069  Sum_probs=42.4

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFI  280 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~v  280 (356)
                      +....+.+|-+.-..=- . +..+.+|++|.+++...+++|+...-..+.+||+|=
T Consensus        34 ~~~~~~~~g~~i~~~g~-~-~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G   87 (230)
T 3iwz_A           34 SHRRRYPTRTDVFRPGD-P-AGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVG   87 (230)
T ss_dssp             SEEEEECTTCEEECTTS-B-CCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEES
T ss_pred             CeEEEeCCCCEEECCCC-C-CCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEE
Confidence            45667788877643222 2 568999999999999999999887778899999984

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=80.76  E-value=6.5  Score=34.13  Aligned_cols=55  Identities=11%  Similarity=0.140  Sum_probs=43.6

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF  279 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~  279 (356)
                      ..+....+.+|-+.-.--- . +..+.+|++|.+++...+++|+...-..+.+||+|
T Consensus        41 ~~~~~~~~~~ge~i~~~G~-~-~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~   95 (243)
T 3la7_A           41 FPPVVETFERNKTIFFPGD-P-AERVYFLLKGAVKLSRVYEAGEEITVALLRENSVF   95 (243)
T ss_dssp             CCCEEEEECTTCEEECTTS-B-CCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEE
T ss_pred             chheeEEECCCCEEEcCCC-C-CceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEE
Confidence            3344778888887743322 2 56899999999999999999988777899999987

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=80.74  E-value=4.8  Score=34.15  Aligned_cols=77  Identities=13%  Similarity=0.149  Sum_probs=52.6

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEE----EcC--CcEEEEeeCCCCe
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFI----VPR--FYVVSKIADPDGL  296 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~v----vP~--g~~h~~~~~~~~~  296 (356)
                      -.+....+.+|.+.--.-. . +..+.+|++|.+++...+++|+...-..+.+||+|=    +-.  -+.+...+ .+++
T Consensus        20 ~~~~~~~~~~g~~i~~~G~-~-~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~A-~~~~   96 (213)
T 1o5l_A           20 PCGKVIVFRKGEIVKHQDD-P-IEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVA-GENS   96 (213)
T ss_dssp             GGSEEEEECTTCEEECTTC-B-CCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCSSEEEE-SSSE
T ss_pred             cccEEEEECCCCEEEcCCC-c-cceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCCCCceEEEEE-ccce
Confidence            3456778888887643322 2 567999999999999999999887777899999882    211  23333344 3456


Q ss_pred             EEEEEE
Q 018395          297 AWFSII  302 (356)
Q Consensus       297 ~~~~~~  302 (356)
                      +++.+.
T Consensus        97 ~v~~i~  102 (213)
T 1o5l_A           97 KILSIP  102 (213)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            666654

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=80.70  E-value=5.7  Score=33.11  Aligned_cols=53  Identities=11%  Similarity=-0.065  Sum_probs=41.0

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF  279 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~  279 (356)
                      +....+.+|-+.---= -. +..+.+|++|.+++...+++|+...-..+.+||+|
T Consensus        62 ~~~~~~~~ge~i~~~G-~~-~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~f  114 (187)
T 3gyd_A           62 MQCYAAPRDCQLLTEG-DP-GDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAII  114 (187)
T ss_dssp             CEEEEECTTCEEECTT-SC-CCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEE
T ss_pred             cEEEEeCCCCEEEcCC-CC-CCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCee
Confidence            5566777777653222 22 66899999999999999999987667789999987

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=80.56  E-value=2.6  Score=32.86  Aligned_cols=53  Identities=8%  Similarity=0.060  Sum_probs=34.7

Q ss_pred             EEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceE----EEEEcCCCEEE
Q 018395           39 AAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEK----VVAIKKGDGIA   91 (356)
Q Consensus        39 ~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~----~~~l~~GDv~~   91 (356)
                      +...++++|..+..---.++.+++|++|.+.+....+++++.    ...+.+||++-
T Consensus        29 ~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG   85 (142)
T 3mdp_A           29 SEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG   85 (142)
T ss_dssp             EEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred             hcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence            456788888865433236889999999999998766665332    46788998874

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=80.05  E-value=2.6  Score=33.34  Aligned_cols=53  Identities=25%  Similarity=0.328  Sum_probs=37.0

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF  279 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~  279 (356)
                      +....+.+|-+.-.--. . +..+.+|++|.+++...+++|+...-..+.+||+|
T Consensus        35 ~~~~~~~~g~~i~~~g~-~-~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~   87 (154)
T 2z69_A           35 SDLVNLDKGAYVFRQGE-P-AHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTF   87 (154)
T ss_dssp             CEEEEECTTCEEECTTS-B-CCEEEEEEESCEEEECCCC-----CCEEECTTEEE
T ss_pred             CcEEEecCCCEEecCCC-c-cceEEEEEeCEEEEEEECCCCCEEEEEEccCCCee
Confidence            56677888877643332 2 56799999999999988888876556689999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	356
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	2e-42
d1od5a1	245	b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea	4e-39
d1fxza1	239	b.82.1.2 (A:10-248) Seed storage 7S protein {Soybe	3e-37
d1fxza2	174	b.82.1.2 (A:297-470) Seed storage 7S protein {Soyb	2e-32
d1fxza2	174	b.82.1.2 (A:297-470) Seed storage 7S protein {Soyb	1e-19
d1od5a2	173	b.82.1.2 (A:321-493) Seed storage 7S protein {Soyb	9e-30
d1od5a2	173	b.82.1.2 (A:321-493) Seed storage 7S protein {Soyb	2e-17
d2phla1	200	b.82.1.2 (A:11-210) Seed storage 7S protein {Frenc	1e-24
d2phla1	200	b.82.1.2 (A:11-210) Seed storage 7S protein {Frenc	7e-12
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	3e-24
g1dgw.1	168	b.82.1.2 (X:,Y:) Seed storage 7S protein {Jack bea	6e-21
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	1e-23
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	1e-10
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	1e-23
d1dgwa_	178	b.82.1.2 (A:) Seed storage 7S protein {Jack bean (	5e-15
d1uika2	185	b.82.1.2 (A:351-535) Seed storage 7S protein {Soyb	5e-23
d1uika2	185	b.82.1.2 (A:351-535) Seed storage 7S protein {Soyb	4e-21
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	4e-21
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	5e-11
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	1e-18
d2et1a1	201	b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare	2e-14
d2phla2	162	b.82.1.2 (A:220-381) Seed storage 7S protein {Fren	2e-15
d2phla2	162	b.82.1.2 (A:220-381) Seed storage 7S protein {Fren	2e-14
d2phda1	351	b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Ps	7e-08
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	8e-08
d3bu7a1	355	b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Si	2e-07
d1sfna_	245	b.82.1.11 (A:) Hypothetical protein DR1152 {Deinoc	4e-05
d1x82a_	190	b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {	1e-04
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	7e-04
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	0.001
d1vr3a1	179	b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse	0.003
d1sq4a_	273	b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {	0.004

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score =  149 bits (377), Expect = 2e-42
 Identities = 54/325 (16%), Positives = 112/325 (34%), Gaps = 24/325 (7%)

Query: 27  NELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKK 86
            ELP+    N+ +  + L+       H+   A  AY++ GS    IV  +    +  + +
Sbjct: 64  RELPISE--NLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGE 121

Query: 87  GDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVS 146
           GD    P G+       E+    +L   D       G F+                E ++
Sbjct: 122 GDLWYFPSGLPHSIQALEEGAEFLLVFDD-------GSFSENSTFQLTDWLAHTPKEVIA 174

Query: 147 RAWDLDENTVKTLVGKQTGKGIVKLDAN---AKLPEPKKEHRDGMAFN-CEEAPLDVDIK 202
             + + +  +  L GK+      +L  +     +  P  E      +   E+ P++    
Sbjct: 175 ANFGVTKEEISNLPGKEKYIFENQLPGSLKDDIVEGPNGEVPYPFTYRLLEQEPIES--- 231

Query: 203 NGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG 262
            GG+V + ++ N  +   +     LV ++  AM    +  ++  +  Y + G  R  +  
Sbjct: 232 EGGKVYIADSTNFKVSKTIASA--LVTVEPGAMRELHWHPNTH-EWQYYISGKARMTVFA 288

Query: 263 PDGKRVLETTVKAGNLFIVPRFYVVSKI-ADPDGLAWFSIITTPNPIFTHLAGSIGTWKS 321
            DG        +AG++  VP            + L +  I    +     L   +     
Sbjct: 289 SDGHART-FNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSLNQWLA---M 344

Query: 322 LSPSVLEAAFNVPSDVEKQFRSKRA 346
           L  + ++A  ++  D       ++ 
Sbjct: 345 LPETFVQAHLDLGKDFTDVLSKEKH 369

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score =  137 bits (346), Expect = 4e-39
 Identities = 48/238 (20%), Positives = 80/238 (33%), Gaps = 62/238 (26%)

Query: 5   LTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVL 64
           L            GG    W     P L+   +  +K  L +NG  LP Y    ++  V+
Sbjct: 8   LNALEPDHRVESEGGLIETWNSQH-PELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVV 66

Query: 65  QGSGVAGIVLP-------------------------EKEEKVVAIKKGDGIALPFGVVTW 99
           QG G  G   P                         +  +K+    +GD + +P GV  W
Sbjct: 67  QGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYW 126

Query: 100 WYNKEDTELVVLFLGDTSKGHKA--GEFTNFFLTG------------------------- 132
            YN  D  +V + L DTS  +         F+L G                         
Sbjct: 127 TYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDIEHPETMQQQQQQKSHGGRKQG 186

Query: 133 --------ANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG-IVKLDANAKLPEPK 181
                      + +GFS  F++++++ +E+T + L      +  IV ++    +  PK
Sbjct: 187 QHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPK 244

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 239

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score =  132 bits (333), Expect = 3e-37
 Identities = 50/233 (21%), Positives = 85/233 (36%), Gaps = 58/233 (24%)

Query: 5   LTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVL 64
           L            GG    W PN     +   +  ++  L +N    P Y +  +  Y+ 
Sbjct: 8   LNALKPDNRIESEGGLIETWNPNN-KPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQ 66

Query: 65  QGSGVAGIVLP----------------------EKEEKVVAIKKGDGIALPFGVVTWWYN 102
           QG G+ G++ P                      ++ +K+   ++GD IA+P GV  W YN
Sbjct: 67  QGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYN 126

Query: 103 KEDTELVVLFLGDTSKGHKAGEFT--NFFLTG---------------------------- 132
            EDT +V + + DT+      +     F+L G                            
Sbjct: 127 NEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFLKYQQEQGGHQSQKGKHQQEEE 186

Query: 133 --ANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGK---GIVKLDANAKLPEP 180
                I +GF+ EF+  A+ +D+   K L G+  G+    IV +     + +P
Sbjct: 187 NEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKP 239

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 174

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score =  117 bits (294), Expect = 2e-32
 Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 2/158 (1%)

Query: 198 DVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGR 257
           D+     G V    + + P +  +   A+   L   AM  P ++ + A  + Y + G   
Sbjct: 17  DIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLN-ANSIIYALNGRAL 75

Query: 258 AQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIG 317
            Q+V  +G+RV +  ++ G + IVP+ +VV+  +  D   + S  T   P+   LAG+  
Sbjct: 76  IQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANS 135

Query: 318 TWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP 355
              +L   V++  FN+ S   +Q ++         PP 
Sbjct: 136 LLNALPEEVIQHTFNLKSQQARQIKNNN-PFKFLVPPQ 172

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Length = 174

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

 Score = 82.7 bits (204), Expect = 1e-19
 Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 9/153 (5%)

Query: 13  VYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGVAG 71
           +Y    GS       + P L    + A   +L KN   +PHY  ++  + Y L G  +  
Sbjct: 18  IYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQ 77

Query: 72  IVLPEKEEKVVA-IKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFL 130
           +V    E      +++G  + +P   V    ++ D    V F  + +            L
Sbjct: 78  VVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDT-------PMIGTL 130

Query: 131 TGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQ 163
            GAN +      E +   ++L     + +    
Sbjct: 131 AGANSLLNALPEEVIQHTFNLKSQQARQIKNNN 163

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 173

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score =  110 bits (275), Expect = 9e-30
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 6/160 (3%)

Query: 196 PLDVDIKN--GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVR 253
           P   D  N   GR+  LN+  LP + + G  A  V L    + SP ++ ++   V Y+ R
Sbjct: 18  PSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNAN-SVIYVTR 76

Query: 254 GSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLA 313
           G GR ++V   G  V +  ++ G L +VP+ +VV++     GL +    T  N + +++ 
Sbjct: 77  GKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYIK 136

Query: 314 GSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFP 353
                  ++   VL  ++N+     +Q + +  +  +  P
Sbjct: 137 DVFR---AIPSEVLSNSYNLGQSQVRQLKYQGNSGPLVNP 173

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 173

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

 Score = 76.9 bits (189), Expect = 2e-17
 Identities = 33/159 (20%), Positives = 60/159 (37%), Gaps = 12/159 (7%)

Query: 13  VYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAG 71
            Y    G         LP LRQ  + A  + L +NG   PH+  ++  V YV +G G   
Sbjct: 23  FYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVR 82

Query: 72  IVLPEKEEKVVA-IKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFL 130
           +V  +        +++G  + +P   V      E     V+F              N   
Sbjct: 83  VVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFK----------THHNAVS 132

Query: 131 TGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIV 169
           +    +F    +E +S +++L ++ V+ L  +     +V
Sbjct: 133 SYIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPLV 171

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 97.7 bits (243), Expect = 1e-24
 Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 12/174 (6%)

Query: 11  KQVYGGNGGSYHAWCPNEL--PMLRQ-GNIGAAKLALEKNGFALPHYCDSARVAYVLQGS 67
             ++    G        +     L+   +    +   +     LP   D+  +  V  GS
Sbjct: 13  NTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGS 72

Query: 68  GVAGIVLPEKEE-----KVVAIKKGDGIALPFGVVTWWYNKEDTE-LVVLFLGDTSKGHK 121
            +  +V P+                D   +P G + +  N +  E L ++ L       +
Sbjct: 73  AILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQ 132

Query: 122 AGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKG---IVKLD 172
             EF              FS   +  +++     +  ++ ++ G+    IV +D
Sbjct: 133 IHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEEGQQEGVIVNID 186

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 200

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 61.5 bits (149), Expect = 7e-12
 Identities = 18/134 (13%), Positives = 39/134 (29%), Gaps = 14/134 (10%)

Query: 227 LVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLET----TVKAGNLFIVP 282
             R   + +  P  +   A  +  +  GS    +V PD +R             +   +P
Sbjct: 46  EFRSKPETLLLPQQA--DAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIP 103

Query: 283 RFYV--VSKIADPDGLAWFSIITTPN------PIFTHLAGSIGTWKSLSPSVLEAAFNVP 334
              +  +      + L    +    N         +         +  S  +LEA+FN  
Sbjct: 104 AGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEASFNSK 163

Query: 335 SDVEKQFRSKRANE 348
            +   +   +   +
Sbjct: 164 FEEINRVLFEEEGQ 177

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 94.6 bits (235), Expect = 1e-23
 Identities = 26/144 (18%), Positives = 59/144 (40%), Gaps = 7/144 (4%)

Query: 24  WCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVA 83
           +      +    +    +   + N   LPH+ D+  +  +L G+ +  +V  +  +    
Sbjct: 27  FNKRSQQLQNLRDYRILEFNSKPNTLLLPHHADADYLIVILNGTAILTLVNNDDRD-SYN 85

Query: 84  IKKGDGIALPFGVVTWWYNKEDTE-LVVLFLGDTSKGHKAGEFTNFFLTG---ANGIFTG 139
           ++ GD + +P G   +  N ++ E L ++ L      +K G F +FFL+          G
Sbjct: 86  LQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPV--NKPGRFESFFLSSTQAQQSYLQG 143

Query: 140 FSTEFVSRAWDLDENTVKTLVGKQ 163
           FS   +  ++D     +  ++  +
Sbjct: 144 FSKNILEASYDTKFEEINKVLFGR 167

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 58.4 bits (141), Expect = 1e-10
 Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 17/156 (10%)

Query: 203 NGGRVVLLN---TKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQ 259
             G V +L     ++  L                 +  P  +   A  +  I+ G+    
Sbjct: 17  QYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHA--DADYLIVILNGTAILT 74

Query: 260 IVGPDGKRVLETTVKAGNLFIVPRFYV--VSKIADPDGLAWFSIITTPN-----PIFTHL 312
           +V  D +      +++G+   VP      V    + + L   ++    N       F   
Sbjct: 75  LVNNDDRDSY--NLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLS 132

Query: 313 AGSIGT--WKSLSPSVLEAAFNVPSD-VEKQFRSKR 345
           +        +  S ++LEA+++   + + K    + 
Sbjct: 133 STQAQQSYLQGFSKNILEASYDTKFEEINKVLFGRE 168

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score = 93.9 bits (233), Expect = 1e-23
 Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 8/142 (5%)

Query: 35  GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF 94
            +    +   + N   LPH+ DS  +  VL+G  +  +V P+  +    + +GD I +  
Sbjct: 39  RDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIKIQA 97

Query: 95  GVVTWWYNKEDTE-LVVLFLGDTSKGHKAGEFTNFFLTGANG---IFTGFSTEFVSRAWD 150
           G   +  N ++ + L +L    T +    G   +FFL+         + FS  F+  ++D
Sbjct: 98  GTPFYLINPDNNQNLRILKFAITFRRP--GTVEDFFLSSTKRLPSYLSAFSKNFLEASYD 155

Query: 151 LDENTVKTLVGKQTGKG-IVKL 171
              + ++  + ++  +G IVK+
Sbjct: 156 SPYDEIEQTLLQEEQEGVIVKM 177

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Length = 178

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

 Score = 70.4 bits (172), Expect = 5e-15
 Identities = 23/164 (14%), Positives = 45/164 (27%), Gaps = 16/164 (9%)

Query: 204 GGRVVLLN---TKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQI 260
            G + LL         L                 +  P  S   +  +  ++ G     +
Sbjct: 19  HGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHS--DSDLLVLVLEGQAILVL 76

Query: 261 VGPDGKRVLETTVKAGNLFIVPRFYV--VSKIADPDGLAWFSIITTPN-------PIFTH 311
           V PDG+      +  G+   +       +    +   L       T            + 
Sbjct: 77  VNPDGRDT--YKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSS 134

Query: 312 LAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFPPP 355
                    + S + LEA+++ P D  +Q   +   E +    P
Sbjct: 135 TKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEGVIVKMP 178

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 185

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 92.8 bits (230), Expect = 5e-23
 Identities = 22/173 (12%), Positives = 53/173 (30%), Gaps = 21/173 (12%)

Query: 13  VYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGVAG 71
           +Y    G      P + P LR  ++  + + + +    LPH+   +  V  + +G     
Sbjct: 18  IYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIE 77

Query: 72  IVLPEKEE--------------KVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTS 117
           +V  ++++                  + + D   +P G         D       +    
Sbjct: 78  LVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFFAFGINAE- 136

Query: 118 KGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVK 170
                    NF     + + +   ++    A+      ++ L+  Q+    V 
Sbjct: 137 -----NNQRNFLAGSKDNVISQIPSQVQELAFPGSAKDIENLIKSQSESYFVD 184

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 185

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 87.4 bits (216), Expect = 4e-21
 Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 16/165 (9%)

Query: 203 NGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG 262
             G++  +  +  P + ++     +V ++  A+  P F+   A+ V  I  G    ++VG
Sbjct: 22  KLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSK-AIVVLVINEGEANIELVG 80

Query: 263 PD-------------GKRVLETTVKAGNLFIVPRFYVVSKIADPD-GLAWFSIITTPNPI 308
                            R     +   ++F++P  Y V   A  D     F I    N  
Sbjct: 81  IKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFFAFGINAENNQR 140

Query: 309 FTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKRANEAIFFP 353
                        +   V E AF   +   +     + +E+ F  
Sbjct: 141 NFLAGSKDNVISQIPSQVQELAFPGSAKDIENLIKSQ-SESYFVD 184

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 86.9 bits (215), Expect = 4e-21
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 7/131 (5%)

Query: 35  GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF 94
            +    +   + N   LPH+ D+  + +VL G  +  +V  +  +    +  GD   +P 
Sbjct: 42  RDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD-SYNLHPGDAQRIPA 100

Query: 95  GVVTWWYNKEDTE-LVVLFLGDTSKGHKAGEFTNFFLTGANG---IFTGFSTEFVSRAWD 150
           G   +  N  D + L +++L      +K G + +FFL+          GFS   +  ++ 
Sbjct: 101 GTTYYLVNPHDHQNLKMIWLAIPV--NKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFH 158

Query: 151 LDENTVKTLVG 161
            +   +  ++ 
Sbjct: 159 SEFEEINRVLF 169

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 58.7 bits (142), Expect = 5e-11
 Identities = 13/107 (12%), Positives = 33/107 (30%), Gaps = 12/107 (11%)

Query: 245 ALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYV--VSKIADPDGLAWFSII 302
           A  + +++ G     +V  D +      +  G+   +P      +    D   L    + 
Sbjct: 64  ADFLLFVLSGRAILTLVNNDDRDS--YNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIWLA 121

Query: 303 TTPN-------PIFTHLAGSIGTWKSLSPSVLEAAFNVPSD-VEKQF 341
              N          +         +  S ++LE +F+   + + +  
Sbjct: 122 IPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVL 168

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 80.7 bits (199), Expect = 1e-18
 Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 5/154 (3%)

Query: 195 APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRG 254
              +    NG  V  L+    P    +G   + V         P      A ++  +++G
Sbjct: 44  KAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPP-HIHPRATEIGMVMKG 102

Query: 255 SGRAQIVGP--DGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLA-WFSIITTPNP-IFT 310
                I+G    G ++    V+AG  F++PR  +  +       A       + NP I  
Sbjct: 103 ELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVF 162

Query: 311 HLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSK 344
                 G+   +   VL  A  V + V +  +SK
Sbjct: 163 VPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSK 196

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 201

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score = 69.2 bits (169), Expect = 2e-14
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 9/143 (6%)

Query: 27  NELPMLRQGNIGAAKLALEKNGFALPHYCDSA-RVAYVLQGSGVAGIVLPEKEEKVVA-- 83
            E P      +   ++     G   PH    A  +  V++G  + GI+        +   
Sbjct: 62  AEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121

Query: 84  -IKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFST 142
            ++ G+   +P G++ + +N   TE  ++   ++      G           G      T
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQ---NPGIVF--VPLTLFGSDPPIPT 176

Query: 143 EFVSRAWDLDENTVKTLVGKQTG 165
             +++A  ++   V+ L  K  G
Sbjct: 177 PVLTKALRVEAGVVELLKSKFAG 199

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 162

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 70.7 bits (173), Expect = 2e-15
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 16/143 (11%)

Query: 222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKR------VLETTVKA 275
                 + ++  A+  P +    A+ +  +  G    ++VGP G +           +  
Sbjct: 19  NVLISSIEMEEGALFVPHYYSK-AIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSK 77

Query: 276 GNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAG---SIGTW---KSLSPSVLEA 329
            ++F++P  Y V+  A  +       I   N     LAG   ++ +          VL  
Sbjct: 78  DDVFVIPAAYPVAIKATSNVNFTGFGINANNNNRNLLAGKTDNVISSIGRALDGKDVLGL 137

Query: 330 AFNVPSD-VEKQFRSKRANEAIF 351
            F+   D V K    +    + F
Sbjct: 138 TFSGSGDEVMKLINKQS--GSYF 158

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Length = 162

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

 Score = 68.4 bits (167), Expect = 2e-14
 Identities = 22/165 (13%), Positives = 49/165 (29%), Gaps = 25/165 (15%)

Query: 19  GSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGVAGIVLPEK 77
           G+      N L      N+  + + +E+    +PHY   +  +  V +G     +V P+ 
Sbjct: 8   GNLTERTDNSL------NVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKG 61

Query: 78  EEKVVA-------IKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFL 130
            ++ +        + K D   +P           +       +             N   
Sbjct: 62  NKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNFTGFGINAN------NNNRNLLA 115

Query: 131 TGANGIF-----TGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVK 170
              + +           + +   +    + V  L+ KQ+G   V 
Sbjct: 116 GKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSGSYFVD 160

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Length = 351

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

 Score = 51.3 bits (122), Expect = 7e-08
 Identities = 38/260 (14%), Positives = 74/260 (28%), Gaps = 18/260 (6%)

Query: 35  GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF 94
             + A    L     A  H        +V++G GV  +V  +     V + +GD +  P 
Sbjct: 85  PTMWAGIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDP----VRMSRGDLLLTPG 140

Query: 95  GVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDEN 154
                  N  D  +  +   D     +      FF  G++ +    +  F          
Sbjct: 141 WCFHGHMNDTDQPMAWIDGLDIPFSQQMD--VGFFEFGSDRVTDYATPNFSRGERLWCHP 198

Query: 155 TVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKN 214
            ++ L G Q                   +         E+      +  G   +      
Sbjct: 199 GLRPLSGLQNTVASPIGA----YRWEFTDRALTEQLLLEDEGQPATVAPGHAAIRYVNPT 254

Query: 215 LPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVK 274
                      +  RL      +      S   V  +  G+G   +   +G+      ++
Sbjct: 255 TGGDVMPTLRCEFHRLRAGTETATRNEVGST--VFQVFEGAGAVVM---NGETT---KLE 306

Query: 275 AGNLFIVPRFYVVSKIADPD 294
            G++F+VP +   S  A+  
Sbjct: 307 KGDMFVVPSWVPWSLQAETQ 326

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 50.9 bits (121), Expect = 8e-08
 Identities = 40/265 (15%), Positives = 76/265 (28%), Gaps = 36/265 (13%)

Query: 35  GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF 94
             + A    +     A  H  + + + ++++G G    V  E+      + +GD I  P 
Sbjct: 52  ATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVDGER----TPMNEGDFILTPQ 107

Query: 95  GVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWD--LD 152
                  N  D  ++ L   D                    +       F     +    
Sbjct: 108 WRWHDHGNPGDEPVIWLDGLD------------------LPLVNILGCGFAEDYPEEQQP 149

Query: 153 ENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNC-EEAPLDVDIKNGGRVVLLN 211
               +     +    ++ L        P   +R   +     +     D        +  
Sbjct: 150 VTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRLGDADEWDGYKMRY 209

Query: 212 TKNLPLVGEVG--CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVL 269
             N    G      GA L  L          + DS   + ++V GSG+  I     +   
Sbjct: 210 V-NPVTGGYPMPSMGAFLQLLPKGFASRVARTTDST--IYHVVEGSGQVII---GNETF- 262

Query: 270 ETTVKAGNLFIVPRFYVVSKIADPD 294
             +  A ++F+VP ++ VS     D
Sbjct: 263 --SFSAKDIFVVPTWHGVSFQTTQD 285

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Length = 355

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 36/278 (12%), Positives = 74/278 (26%), Gaps = 23/278 (8%)

Query: 35  GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF 94
           G + +    ++    A  H   ++ + ++++GSG   IV   K    V +   D +  P 
Sbjct: 83  GWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVDGHK----VELGANDFVLTPN 138

Query: 95  GVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDEN 154
           G        E     +   G           TN         +     ++ +    L+++
Sbjct: 139 GTWHEHGILESGTECIWQDGL------DIPLTNCLEA---NFYEVHPNDYQTTDIPLNDS 189

Query: 155 TVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKN 214
            +    G       +        P  K             A         G ++      
Sbjct: 190 PLTY--GGPALLPQLDKWDKPYSPLLKYSWEPTYEALLNYAKASDGSPYDGLILRYTNPQ 247

Query: 215 LPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVK 274
                 +  GA +  L             +   +  + +G G + +    GKR       
Sbjct: 248 TGGHPMLTMGASMQMLRPGEHTKAHRHTGNV--IYNVAKGQGYSIV---GGKRF---DWS 299

Query: 275 AGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHL 312
             ++F VP +         +            P+   L
Sbjct: 300 EHDIFCVPAWTWHEHCNTQERDDACLFSFNDFPVMEKL 337

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 6/94 (6%)

Query: 24  WCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVV 82
                LP     +   + ++                    +L+G G+  +     EE   
Sbjct: 152 IARKLLPDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL-----EENYY 206

Query: 83  AIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDT 116
            +  GD I +      W+          L   D 
Sbjct: 207 PVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDM 240

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 190

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 52  PHY---CDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTEL 108
            H+    D A V   L+G G   +  PE + K ++++ G  + +P        N  D   
Sbjct: 88  GHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDEPF 147

Query: 109 VVLFLGDTSKGHKAGEF 125
           + L +     GH  G  
Sbjct: 148 IFLAIYPADAGHDYGTI 164

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 34/287 (11%), Positives = 70/287 (24%), Gaps = 39/287 (13%)

Query: 50  ALPHY-CDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVV-TWWYNKEDTE 107
            LPH         Y  +GS         + ++   +  GD  ++P  V  T+     DTE
Sbjct: 61  VLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTE 120

Query: 108 LVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLD----------ENTVK 157
           +  + +         G F + F            T ++  + D                 
Sbjct: 121 MTGVIVP--------GGFEDLFYYLGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQS 172

Query: 158 TLVGKQTGKGIVKLDANAKLPEPKKEHRDGMA----------FNCEEAPLDVDIKNGGRV 207
             V  +          N   P     H    A                P  ++ + G ++
Sbjct: 173 FDVYAELSFTPRTDTVNGTAPANTVWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQI 232

Query: 208 V--LLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG 265
           V   +                +                       +  G    QI     
Sbjct: 233 VAPFVTATQAQDTNYTLSTISMSTTPSTVT--VPTWSFPGACAFQVQEGRVVVQIGDYA- 289

Query: 266 KRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHL 312
                T + +G++  +P        ++        + +  + +  +L
Sbjct: 290 ----ATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSSGSDGLDQNL 332

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 38/274 (13%), Positives = 69/274 (25%), Gaps = 27/274 (9%)

Query: 35  GNIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALP 93
                  L+  K      H   D+     VL G     +     + +   +  GD   +P
Sbjct: 40  DLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL-----DGERYLLISGDYANIP 94

Query: 94  FGVV-TWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLD 152
            G   ++      T LV   +             + +    N         + S     +
Sbjct: 95  AGTPHSYRMQSHRTRLVSYTMKGN--------VAHLYSVIGNPYDHAEHPPYASEEVSNE 146

Query: 153 ENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNT 212
                  V         K   +AK      E  DG      E+     +  G ++     
Sbjct: 147 RFAEAAAVATIVFLDEAKPACSAK-LAELTELPDGAVPYVLESGEGDRLLTGDQLH---- 201

Query: 213 KNLPLVGEVGCGADLVRLDGKAMCSPGF-SCDSALQVTYIVRGSGRAQIVGPDGKRVLET 271
           + +           +V  +G           +   +  Y + G         DG+   E 
Sbjct: 202 RIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT---DGQ---EI 255

Query: 272 TVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTP 305
            +  G+   VP   V S   D        ++   
Sbjct: 256 QLNPGDFLHVPANTVHSYRLDSHYTKMVGVLVPG 289

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 16/63 (25%), Positives = 29/63 (46%)

Query: 49  FALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTEL 108
           F   H      + Y+L+GSG   +   E +   ++++KGD I LP G+   +   E   +
Sbjct: 84  FFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNYV 143

Query: 109 VVL 111
             +
Sbjct: 144 KAM 146

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 6/88 (6%)

Query: 29  LPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKG 87
                + ++    +  E  G              YVL+G  V  +      +  V ++ G
Sbjct: 181 DMSDMRHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL-----NQDWVEVEAG 235

Query: 88  DGIALPFGVVTWWYNKEDTELVVLFLGD 115
           D + L        Y+        L   D
Sbjct: 236 DFMWLRAFCPQACYSGGPGRFRYLLYKD 263

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	100.0
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	100.0
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	100.0
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	100.0
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	100.0
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	100.0
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	100.0
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	100.0
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	100.0
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	100.0
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	100.0
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	99.98
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	99.97
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	99.97
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	99.97
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	99.97
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.97
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	99.96
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	99.96
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	99.95
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	99.95
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	99.94
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	99.94
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	99.93
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	99.93
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	99.88
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	99.87
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	99.87
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	99.86
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	99.82
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	99.81
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.81
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.81
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.76
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.73
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.61
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.54
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.45
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.44
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.44
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.41
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	99.31
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	99.31
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.26
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.24
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	99.17
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	99.15
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.14
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.13
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.12
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.11
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.06
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.02
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.98
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	98.96
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	98.95
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	98.95
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.95
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.91
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	98.91
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	98.87
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.71
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.69
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	98.58
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.57
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	98.52
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	98.41
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	98.36
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	98.18
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	97.99
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	97.98
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	97.97
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	97.86
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	97.79
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	97.77
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	97.76
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.45
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	97.43
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.42
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	97.41
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	97.36
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	97.14
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	97.09
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	96.8
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	96.62
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	96.61
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	96.51
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	96.49
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	96.48
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	96.45
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	96.38
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	96.34
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	96.32
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	96.32
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	96.28
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	96.27
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	96.24
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	96.14
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	96.09
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	95.99
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	95.92
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	95.92
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	95.86
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	95.83
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	95.79
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	95.73
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	95.42
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	95.26
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	95.18
d1yuda1	158	Hypothetical protein SO0799 {Shewanella oneidensis	95.15
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	95.1
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	94.68
d1yuda1	158	Hypothetical protein SO0799 {Shewanella oneidensis	94.42
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	94.27
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	93.47
d1znpa1	140	Hypothetical protein Atu3615 {Agrobacterium tumefa	92.92
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	92.46
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	92.0
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	91.59
d1znpa1	140	Hypothetical protein Atu3615 {Agrobacterium tumefa	89.76
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	89.29
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	88.96
d1e5ra_	290	Type II Proline 3-hydroxylase (proline oxidase) {S	88.46
d1xe7a_	194	Hypothetical protein YML079W {Baker's yeast (Sacch	88.4
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	88.16
d1xrua1	277	5-keto-4-deoxyuronate isomerase KduI {Escherichia	86.99
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	86.24
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	85.23
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	85.12
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	84.13
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	84.05
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	83.66
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	83.6
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	83.3
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	82.85
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	82.38
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	82.12
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	82.09
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	81.92
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	81.71
d1zyba2	147	Probable transcription regulator BT4300, N-termina	80.4
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	80.36

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=1e-57  Score=441.06  Aligned_cols=311  Identities=18%  Similarity=0.241  Sum_probs=268.1

Q ss_pred             CCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCC
Q 018395           16 GNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG   95 (356)
Q Consensus        16 ~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G   95 (356)
                      .+||++++.+..++|.++  +|++..++|+||++++||||.+.||.||++|++++++++++++..+.+|++||+++||+|
T Consensus        53 ~~gg~~r~~~~~~lp~~~--~~a~~~~~L~pga~~~pH~H~~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G  130 (372)
T d1j58a_          53 EKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSG  130 (372)
T ss_dssp             ETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTT
T ss_pred             cCCCeeEEeehhhChhhh--hhhheEEEECCCcCcCCcccCcccEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEECCC
Confidence            489999999999999997  589999999999999999995569999999999999999998877789999999999999


Q ss_pred             cEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCC
Q 018395           96 VVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANA  175 (356)
Q Consensus        96 ~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~  175 (356)
                      ++||++|. +++++++.+++..   ++.....|.+   .+||+++|.+||+++|+++.+++++++++|.  +|+......
T Consensus       131 ~~H~i~n~-~dg~e~l~vf~~~---~~~~~~~f~~---~~~~~~~p~evLa~af~v~~~~~~~i~~~e~--~i~~~~~p~  201 (372)
T d1j58a_         131 LPHSIQAL-EEGAEFLLVFDDG---SFSENSTFQL---TDWLAHTPKEVIAANFGVTKEEISNLPGKEK--YIFENQLPG  201 (372)
T ss_dssp             CCEEEEEE-EEEEEEEEEESCT---TCCGGGEEEH---HHHHHTSCHHHHHHHHTCCTGGGTTSCSSCC--SEECCCCCC
T ss_pred             CEEEEEeC-CCCcEEEEEECCC---Ccccccceee---ccccccCCHHHHHHhhCCCHHHHhhcccccc--ccccccCCC
Confidence            99999996 4568999988754   3444444443   5899999999999999999999999998775  455432111


Q ss_pred             c-----CCCCCcccCCCceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEE
Q 018395          176 K-----LPEPKKEHRDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTY  250 (356)
Q Consensus       176 ~-----~~~p~~~~~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~  250 (356)
                      .     ...|.......+.|++.+++| + ++.||+++++++++||++++  |+++.++|.||+|++|||||+ |+||.|
T Consensus       202 ~~~~~~~~~~~g~~~~~~~~~l~~q~P-~-~~~gG~~~~~d~~~fp~~~~--is~~~~~l~PG~~~~~H~Hp~-a~E~~y  276 (372)
T d1j58a_         202 SLKDDIVEGPNGEVPYPFTYRLLEQEP-I-ESEGGKVYIADSTNFKVSKT--IASALVTVEPGAMRELHWHPN-THEWQY  276 (372)
T ss_dssp             CHHHHCCCCTTCCCSSCSEEEGGGSCC-E-ECSSEEEEEESTTTSTTCCS--CEEEEEEECTTCEEEEEECSS-SCEEEE
T ss_pred             cchhhhccCCCCCCCCcceeeccccCC-c-ccCCccEEEeccccCCccCc--eeEEEEEECCCcccCCCCCCC-CcEEEE
Confidence            1     112223334567999999988 4 68899999999999999995  789999999999999999999 999999


Q ss_pred             EEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHH
Q 018395          251 IVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEA  329 (356)
Q Consensus       251 v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~  329 (356)
                      |++|+++++|++++|+ ..+.++++|||++||+|++|++ |.|+++++|+.++++++++...+   ++||+.+|.+|+++
T Consensus       277 vl~G~g~v~v~~~~g~-~~t~~l~~GDv~~iP~g~~H~i~N~g~e~l~~l~vf~s~~~~~i~~---~~~l~~~P~~vv~~  352 (372)
T d1j58a_         277 YISGKARMTVFASDGH-ARTFNYQAGDVGYVPFAMGHYVENIGDEPLVFLEIFKDDHYADVSL---NQWLAMLPETFVQA  352 (372)
T ss_dssp             EEESEEEEEEEEETTE-EEEEEEESSCEEEECTTCBEEEEECSSSCEEEEEEESSSSCCCEEH---HHHHHTSCHHHHHH
T ss_pred             EEECeEEEEEEcCCCc-eEEEEecCCcEEEECCCCeEEEEECCCCCEEEEEEECCCCcceeeH---HHHhhhCCHHHHHH
Confidence            9999999999999875 4567999999999999999999 55899999999999988876655   58999999999999


Q ss_pred             HcCCCHHHHHHHHhcCC
Q 018395          330 AFNVPSDVEKQFRSKRA  346 (356)
Q Consensus       330 af~~~~~~~~~l~~~~~  346 (356)
                      +|+++.+++++|++.++
T Consensus       353 ~~~~~~e~~~~l~~~k~  369 (372)
T d1j58a_         353 HLDLGKDFTDVLSKEKH  369 (372)
T ss_dssp             HHTCCHHHHTTCCSSCC
T ss_pred             HhCcCHHHHHHHHhcCC
Confidence            99999999999987653

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=100.00  E-value=6.8e-43  Score=303.91  Aligned_cols=167  Identities=23%  Similarity=0.431  Sum_probs=157.1

Q ss_pred             Cceeecc-CCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCC
Q 018395          187 GMAFNCE-EAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG  265 (356)
Q Consensus       187 ~~~~~l~-~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g  265 (356)
                      +.++||. +.++|+++++||+++.+++.+||+|+++|||+++++|+||||++|||||+ |+||+||++|++++++++++|
T Consensus         5 ~~~~ni~~~~~~d~~~~~gG~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~PH~H~~-A~ei~yV~~G~~~v~~v~~~g   83 (174)
T d1fxza2           5 RLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLN-ANSIIYALNGRALIQVVNCNG   83 (174)
T ss_dssp             CCEEECSSSSCCSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETT-CCEEEEEEESEEEEEEECTTS
T ss_pred             ehhhccCCCCCCCcCcCCCeEEEEecHHHhhhhhhcCceEEEeeecCCCEeCCccCCC-CCEEEEEEecceEEEEecCCC
Confidence            4578994 57899999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             ceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHHHHHHhcC
Q 018395          266 KRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKR  345 (356)
Q Consensus       266 ~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~~~l~~~~  345 (356)
                      +++++++|++|||++||+|++||+.+++++++++++++++++...+++|.+++|+++|++||+++|+++.|++++|++.+
T Consensus        84 ~~~~~~~l~~Gdv~vvP~G~~h~~~n~~~~~~~v~~~~~~~~~~~~lag~~s~l~~~~~~vl~~af~v~~eei~~lk~~q  163 (174)
T d1fxza2          84 ERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYVSFKTNDTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNN  163 (174)
T ss_dssp             CEEEEEEEETTCEEEECTTCEEEEEECSTTEEEEEEESSSSCCEEESSSTTCTGGGSCHHHHHHHHTCCHHHHHHHHHSC
T ss_pred             ceeEEEEEcCCcEEEECCCCEEEEEeCCCCeEEEEEEccCCCCcccccchhhhhhcCCHHHHHHHHCcCHHHHHHHHhcC
Confidence            99999999999999999999999988888999999999999999999999999999999999999999999999999998


Q ss_pred             CCeEEecCCC
Q 018395          346 ANEAIFFPPP  355 (356)
Q Consensus       346 ~~~~~~~~p~  355 (356)
                      ++..++ ||.
T Consensus       164 ~~~~~~-~P~  172 (174)
T d1fxza2         164 PFKFLV-PPQ  172 (174)
T ss_dssp             CCSSEE-CCC
T ss_pred             CceEeC-CCC
Confidence            777555 554

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=100.00  E-value=1.5e-41  Score=294.78  Aligned_cols=163  Identities=24%  Similarity=0.446  Sum_probs=152.7

Q ss_pred             Cceeecc-CCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCC
Q 018395          187 GMAFNCE-EAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG  265 (356)
Q Consensus       187 ~~~~~l~-~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g  265 (356)
                      ..++||. +.++|+++++||+++.+++++||+|+++|||+++++|.||||++||||++ |+||+||++|+++++++++++
T Consensus        10 ~~r~ni~~p~~~d~~n~~gG~i~~~~~~~fP~L~~lgls~~~v~L~pga~~~PH~H~~-A~ei~yV~~G~~~v~~v~~~~   88 (173)
T d1od5a2          10 KLHENIARPSRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLN-ANSVIYVTRGKGRVRVVNCQG   88 (173)
T ss_dssp             CCEEECCSGGGCSEEETTTEEEEEESTTTCTTHHHHTCEEEEEEECTTCEEEEEEESS-CCEEEEEEEEEEEEEEECTTS
T ss_pred             eeecCCCCcccCCccCCCCeEEEEecHHHhhhhhhccceEEEEEEcCCcEecCccCCC-CcEEEEEEecceEEEEEeCCC
Confidence            4688997 58899999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             ceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHHHHHHhcC
Q 018395          266 KRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKR  345 (356)
Q Consensus       266 ~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~~~l~~~~  345 (356)
                      +++++.+|++|||++||||++||+++++++++|++++++.++....+   +++|+++|++||+++|+++++++++|+.++
T Consensus        89 ~~~~~~~l~~Gdv~~iP~G~~h~~~n~~~~~~~v~~~~~~~~~~~~~---~s~l~~~p~evl~~af~v~~e~v~~lk~~~  165 (173)
T d1od5a2          89 NAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYVVFKTHHNAVSSYI---KDVFRAIPSEVLSNSYNLGQSQVRQLKYQG  165 (173)
T ss_dssp             CEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEESSTTCCEEEH---HHHHHHSCHHHHHHHHTCCHHHHHHHHHSS
T ss_pred             ceEEeEEecCCcEEEECCCCEEEEEcCCCceEEEEeecCCchhhhhH---HHHHHhCCHHHHHHHhCcCHHHHHHHHhcC
Confidence            99999999999999999999999988888999999999888776655   699999999999999999999999999999


Q ss_pred             CCeEEecC
Q 018395          346 ANEAIFFP  353 (356)
Q Consensus       346 ~~~~~~~~  353 (356)
                      ++..|+.|
T Consensus       166 ~~~~i~~P  173 (173)
T d1od5a2         166 NSGPLVNP  173 (173)
T ss_dssp             CSSSEECC
T ss_pred             CCCcccCc
Confidence            88877654

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=100.00  E-value=8.4e-37  Score=267.91  Aligned_cols=165  Identities=19%  Similarity=0.260  Sum_probs=142.4

Q ss_pred             CCCceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccC
Q 018395          185 RDGMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPD  264 (356)
Q Consensus       185 ~~~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~  264 (356)
                      .++.+|||.+++|.+ ++++|+++++++.++|+|+.+|+++++++|+||||++||||++ |+||+||++|++++++++|+
T Consensus         5 ~~~~pfnl~~~~p~~-~n~~G~~~~~~~~~~p~L~~~~v~~~~~~l~p~~~~~Ph~h~~-A~~i~~V~~G~g~v~~v~~~   82 (185)
T d1uika2           5 SEDKPFNLRSRDPIY-SNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSK-AIVVLVINEGEANIELVGIK   82 (185)
T ss_dssp             CSSSCEETTSSCCSE-ESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESS-CEEEEEEEESCEEEEEEEC-
T ss_pred             cCCCccccccCCCce-eCCCCeEEEeChhhChhhhhcCchhheeecCCCceeeeeecCC-CCEEEEEEeeEEEEEEEccC
Confidence            346799999999987 6889999999999999999999999999999999999999999 99999999999999999997


Q ss_pred             C-------------ceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE-cCCCCceecccc-ccccccCCCHHHHHH
Q 018395          265 G-------------KRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII-TTPNPIFTHLAG-SIGTWKSLSPSVLEA  329 (356)
Q Consensus       265 g-------------~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~-~~~~p~~~~laG-~~s~l~~~p~~vl~~  329 (356)
                      +             .++++.+|++|||++||+|++||+.+..+ +.++++. ++.++...+++| .+++|+++|++||++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~d-~~~v~~~~~~~~~~~~f~ag~~~~vl~~~~~evLa~  161 (185)
T d1uika2          83 EQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSD-LNFFAFGINAENNQRNFLAGSKDNVISQIPSQVQEL  161 (185)
T ss_dssp             -----------CBCCEEEEEEECTTCEEEECTTCCEEEEESSS-EEEEEEEETCTTCCEEESSSSSSBGGGGSCHHHHHH
T ss_pred             ccchhhccccccCcceeEEEEecCCcEEEECCCCEEEEEcCCC-ccEEEEEEcCCCCcccccccccccccccCCHHHHHH
Confidence            4             35788999999999999999999977433 5555553 334445555544 689999999999999


Q ss_pred             HcCCCHHHHHHHHhcCCCeEEec
Q 018395          330 AFNVPSDVEKQFRSKRANEAIFF  352 (356)
Q Consensus       330 af~~~~~~~~~l~~~~~~~~~~~  352 (356)
                      |||++.+++++|...+++++|+-
T Consensus       162 aF~v~~~~~~kl~~~q~e~~i~~  184 (185)
T d1uika2         162 AFPGSAKDIENLIKSQSESYFVD  184 (185)
T ss_dssp             HSSSCHHHHHHHHHHCCSCSEEE
T ss_pred             HhCCCHHHHHHHHhcCCceEEec
Confidence            99999999999998888887763

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=100.00  E-value=1.1e-35  Score=269.04  Aligned_cols=177  Identities=28%  Similarity=0.525  Sum_probs=161.4

Q ss_pred             cCCCccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCc-----
Q 018395            4 DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKE-----   78 (356)
Q Consensus         4 dl~~~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~-----   78 (356)
                      .|++.+|..++++++|.++.|+.++ +.|+|+++++.+.+|+|+++.+|||.+++.++||++|+|+++++.|+|.     
T Consensus         7 ~L~a~eP~~r~~sE~G~~E~wd~~~-~qlqcagV~~~r~~I~p~gL~lP~ys~a~~i~yV~qG~G~~giv~Pgc~et~~~   85 (245)
T d1od5a1           7 NLNALEPDHRVESEGGLIETWNSQH-PELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEK   85 (245)
T ss_dssp             CCCCBCCCEEEEETTEEEEECCTTS-HHHHHHTCEEEEEEECTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEE
T ss_pred             ccccCCCchhhcccCCeEEeCCCCC-HHHhhcCceeEEEEEcCCccccccccCCCeEEEEEeCEEEEEEEeCCChhhhcc
Confidence            4889999999999999999999765 9999999999999999999999999999999999999999999998752     


Q ss_pred             --------------------eEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCC--CCceeEEeeccc---
Q 018395           79 --------------------EKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHK--AGEFTNFFLTGA---  133 (356)
Q Consensus        79 --------------------~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~--pg~~~~f~lag~---  133 (356)
                                          ++...|++|||++||+|++||++|+|+++|+++++.++++..|  ++.+..|||||+   
T Consensus        86 ~~~~~~~~~~~~~~~~~d~~qk~~rl~~GDVi~iPAG~~~w~yNdgn~~Lv~v~~~d~~N~~NQLd~~~r~F~laG~~~~  165 (245)
T d1od5a1          86 PQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNPDI  165 (245)
T ss_dssp             CC---------------EEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCCCC
T ss_pred             hhhcccccccccccccccceeeeecccCCCEEEECCCceEEEEeCCCCcEEEEEEEcccCcccccCCcceeEEecCCccc
Confidence                                3456799999999999999999999999999999999876655  567899999996   


Q ss_pred             ------------------------------ccccccCcHHHHHhhccCCHHHHHHhhc-ccCCceEEEcCCCCcCCCCC
Q 018395          134 ------------------------------NGIFTGFSTEFVSRAWDLDENTVKTLVG-KQTGKGIVKLDANAKLPEPK  181 (356)
Q Consensus       134 ------------------------------~s~l~~~~~~vl~~af~~~~~~~~~l~~-~q~~~~iv~~~~~~~~~~p~  181 (356)
                                                    .|+|++|++++|++|||++.++++||+. ++..+.|||+++++++++|+
T Consensus       166 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~nif~gF~~~~La~Af~v~~e~~~klq~~~~~rG~IVrv~~~l~~~~P~  244 (245)
T d1od5a1         166 EHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVTVEGGLSVISPK  244 (245)
T ss_dssp             SCTTTTC---------------------CCCCTTTTSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEECSSCCCCCCSC
T ss_pred             ccchhcccchhhhhcccccccccccccccCCCeeecCCHHHHHHHHCCCHHHHHHHhCcccCCCcEEEEcCCccccCCC
Confidence                                          2899999999999999999999999996 56678999999998888874

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=100.00  E-value=4.5e-35  Score=264.00  Aligned_cols=176  Identities=28%  Similarity=0.549  Sum_probs=159.0

Q ss_pred             cCCCccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCC------
Q 018395            4 DLTPKLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEK------   77 (356)
Q Consensus         4 dl~~~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~------   77 (356)
                      .|++.+|..++++++|.++.|+.++ +.|+|+++++.+.+|+|+++..|||.+|+.++||++|+|+++++.|+|      
T Consensus         7 ~L~a~eP~~ri~sE~G~~E~~d~~~-~qlqcagV~~~r~~I~p~gL~lP~y~~a~~i~yV~qG~G~~g~v~pgc~et~~~   85 (239)
T d1fxza1           7 KLNALKPDNRIESEGGLIETWNPNN-KPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEE   85 (239)
T ss_dssp             CCCCBCCSCEEEETTEEEEECCTTS-HHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC---
T ss_pred             ccccCCCchhhccCCceEEecCCCC-hhhhhccchhheeeeccCceecceecCCCeEEEEEeCEEEEEEecCCChhhhcc
Confidence            4889999999999999999999765 899999999999999999999999999999999999999999998764      


Q ss_pred             ----------------ceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCC--CceeEEeeccc------
Q 018395           78 ----------------EEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKA--GEFTNFFLTGA------  133 (356)
Q Consensus        78 ----------------~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~p--g~~~~f~lag~------  133 (356)
                                      +.++..|++|||++||+|++||++|+|+++|.+++++++++..|.  ..++.|||||+      
T Consensus        86 ~~~~~~~~~~~~~~d~~qk~~~lr~GDVi~iPAG~~~w~~N~gn~~Lv~v~~~d~~n~~NQLd~~~r~F~laG~~~~e~~  165 (239)
T d1fxza1          86 PQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQEFL  165 (239)
T ss_dssp             ---------------CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCTTH
T ss_pred             cccccccccccccchhhhhhhccccCCEEEecCCceEEEEeCCCCcEEEEEEeccccccccccccceeeeccCCcccccc
Confidence                            345689999999999999999999999999999999998876663  35789999996      


Q ss_pred             ------------------------ccccccCcHHHHHhhccCCHHHHHHhhccc---CCceEEEcCCCCcCCCC
Q 018395          134 ------------------------NGIFTGFSTEFVSRAWDLDENTVKTLVGKQ---TGKGIVKLDANAKLPEP  180 (356)
Q Consensus       134 ------------------------~s~l~~~~~~vl~~af~~~~~~~~~l~~~q---~~~~iv~~~~~~~~~~p  180 (356)
                                              .|+|++|+.++|++|||++.++++||+.++   +.+.|||+++++++++|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~ni~~gFs~~~La~Afnv~~e~~~klq~~~~~~~rG~IVrv~~~l~~~~P  239 (239)
T d1fxza1         166 KYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGENEGEDKGAIVTVKGGLSVIKP  239 (239)
T ss_dssp             HHHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-----CCSEEECSSCCCCCCC
T ss_pred             cccccccccccccccccccccccCCCcccccCHHHHHHHHCcCHHHHHHHhcccccccCCCEEEEcCCccccCC
Confidence                                    389999999999999999999999999764   45899999998887766

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=7.2e-35  Score=257.84  Aligned_cols=157  Identities=18%  Similarity=0.261  Sum_probs=140.2

Q ss_pred             CceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEcc--C
Q 018395          187 GMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGP--D  264 (356)
Q Consensus       187 ~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~--~  264 (356)
                      .+.+.-...+.++.++.||+++.+++.+||+|++||||++|++|.||||++|||||+ |+||+||++|+++++++++  +
T Consensus        36 ~f~~~~l~~~~~~~~~~g~~vt~~~~~~fP~Ln~lglS~~rv~l~pgg~~~PH~Hp~-A~Ei~yV~~G~~~v~~v~~~~~  114 (201)
T d2et1a1          36 FLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPR-ATEIGMVMKGELLVGILGSLDS  114 (201)
T ss_dssp             TTCCCTTSSCCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTT-CCEEEEEEESCEEEEEECCGGG
T ss_pred             ceeecccccCCCccCCCCcEEEEeehhcCccccccceeEEEEEECCCCCcCCcccCC-CCEEEEEEcceEEEEEEeccCC
Confidence            345554556667778889999999999999999999999999999999999999999 9999999999999999985  4


Q ss_pred             CceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEEEEcCCCCceeccccccccc---cCCCHHHHHHHcCCCHHHHHH
Q 018395          265 GKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFSIITTPNPIFTHLAGSIGTW---KSLSPSVLEAAFNVPSDVEKQ  340 (356)
Q Consensus       265 g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~~~~p~~~~laG~~s~l---~~~p~~vl~~af~~~~~~~~~  340 (356)
                      ++++++.+|++||||+||||++||+ +.+++++.+++++++++|+.+.++  .+++   .+||+|||+++|+++++++++
T Consensus       115 ~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~~i~~f~s~~pg~~~~~--~~~f~~~~~~p~eVLa~af~i~~~~v~k  192 (201)
T d2et1a1         115 GNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVP--LTLFGSDPPIPTPVLTKALRVEAGVVEL  192 (201)
T ss_dssp             TTCEEEEEECTTCEEEECTTCCEEEEECSSSCEEEEEEESSSCCCCEEHH--HHHHHCSSCCCHHHHHHHHTSCHHHHHH
T ss_pred             CceeEEEEecCCCEEEECCCCeEEEEEcCCCCEEEEEEecCCCCcceehh--hhhhccCCCCCHHHHHHHhCCCHHHHHH
Confidence            6788999999999999999999999 558889999999999999998875  3444   459999999999999999999


Q ss_pred             HHhcCC
Q 018395          341 FRSKRA  346 (356)
Q Consensus       341 l~~~~~  346 (356)
                      ||++..
T Consensus       193 Lks~f~  198 (201)
T d2et1a1         193 LKSKFA  198 (201)
T ss_dssp             HHHTTT
T ss_pred             HHhhcc
Confidence            998764

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=100.00  E-value=1.5e-33  Score=244.51  Aligned_cols=163  Identities=18%  Similarity=0.258  Sum_probs=141.6

Q ss_pred             CcccCCCccc--cceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCC
Q 018395            1 MEIDLTPKLA--KQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEK   77 (356)
Q Consensus         1 ~~~dl~~~~~--~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~   77 (356)
                      |++..+...|  ..++.+++|++..+++.++|.|++.++++.+++|+||++++|||| +|+||.||++|+++++++++++
T Consensus         4 ~~~~~ni~~~~~~d~~~~~gG~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g   83 (174)
T d1fxza2           4 MRLRHNIGQTSSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNG   83 (174)
T ss_dssp             CCCEEECSSSSCCSEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTS
T ss_pred             eehhhccCCCCCCCcCcCCCeEEEEecHHHhhhhhhcCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCC
Confidence            4454443232  358999999999999999999999999999999999999999999 9999999999999999999886


Q ss_pred             c-eEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHH
Q 018395           78 E-EKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTV  156 (356)
Q Consensus        78 ~-~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~  156 (356)
                      . ..+.+|++||+++||+|++||+.|.+ +.+.+++++.+   +++   ..++++|..+||++||++||+++|+++.+++
T Consensus        84 ~~~~~~~l~~Gdv~vvP~G~~h~~~n~~-~~~~~v~~~~~---~~~---~~~~lag~~s~l~~~~~~vl~~af~v~~eei  156 (174)
T d1fxza2          84 ERVFDGELQEGRVLIVPQNFVVAARSQS-DNFEYVSFKTN---DTP---MIGTLAGANSLLNALPEEVIQHTFNLKSQQA  156 (174)
T ss_dssp             CEEEEEEEETTCEEEECTTCEEEEEECS-TTEEEEEEESS---SSC---CEEESSSTTCTGGGSCHHHHHHHHTCCHHHH
T ss_pred             ceeEEEEEcCCcEEEECCCCEEEEEeCC-CCeEEEEEEcc---CCC---CcccccchhhhhhcCCHHHHHHHHCcCHHHH
Confidence            4 44678999999999999999999965 45888877653   334   4678899999999999999999999999999


Q ss_pred             HHhhcccCCceEEE
Q 018395          157 KTLVGKQTGKGIVK  170 (356)
Q Consensus       157 ~~l~~~q~~~~iv~  170 (356)
                      ++|+++|++.+|+.
T Consensus       157 ~~lk~~q~~~~~~~  170 (174)
T d1fxza2         157 RQIKNNNPFKFLVP  170 (174)
T ss_dssp             HHHHHSCCCSSEEC
T ss_pred             HHHHhcCCceEeCC
Confidence            99999998877773

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=100.00  E-value=1.9e-33  Score=246.35  Aligned_cols=157  Identities=16%  Similarity=0.271  Sum_probs=136.0

Q ss_pred             ccccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCC---------
Q 018395            8 KLAKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEK---------   77 (356)
Q Consensus         8 ~~~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~---------   77 (356)
                      .+.+++|++++|++..++..++|.|++.++++.+++|+||++.+|||| +|++++||++|+++++++++++         
T Consensus        13 ~~~~p~~~n~~G~~~~~~~~~~p~L~~~~v~~~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~~~~~~~~~~   92 (185)
T d1uika2          13 RSRDPIYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEE   92 (185)
T ss_dssp             TSSCCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC-----------
T ss_pred             ccCCCceeCCCCeEEEeChhhChhhhhcCchhheeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEccCccchhhcccc
Confidence            445688999999999999999999999999999999999999999999 9999999999999999999875         


Q ss_pred             -----ceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecc-cccccccCcHHHHHhhccC
Q 018395           78 -----EEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTG-ANGIFTGFSTEFVSRAWDL  151 (356)
Q Consensus        78 -----~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag-~~s~l~~~~~~vl~~af~~  151 (356)
                           +.++++|++||+++||+|++||++|+++  +.++++..++. .+    ..+|++| .+++|++||++||++|||+
T Consensus        93 ~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~d--~~~v~~~~~~~-~~----~~~f~ag~~~~vl~~~~~evLa~aF~v  165 (185)
T d1uika2          93 QPLEVRKYRAELSEQDIFVIPAGYPVVVNATSD--LNFFAFGINAE-NN----QRNFLAGSKDNVISQIPSQVQELAFPG  165 (185)
T ss_dssp             -CBCCEEEEEEECTTCEEEECTTCCEEEEESSS--EEEEEEEETCT-TC----CEEESSSSSSBGGGGSCHHHHHHHSSS
T ss_pred             ccCcceeEEEEecCCcEEEECCCCEEEEEcCCC--ccEEEEEEcCC-CC----cccccccccccccccCCHHHHHHHhCC
Confidence                 3457899999999999999999999877  45555555431 11    3455555 6899999999999999999


Q ss_pred             CHHHHHHhhcccCCceEEEc
Q 018395          152 DENTVKTLVGKQTGKGIVKL  171 (356)
Q Consensus       152 ~~~~~~~l~~~q~~~~iv~~  171 (356)
                      +.+++++|+++|++++|+.+
T Consensus       166 ~~~~~~kl~~~q~e~~i~~a  185 (185)
T d1uika2         166 SAKDIENLIKSQSESYFVDA  185 (185)
T ss_dssp             CHHHHHHHHHHCCSCSEEEC
T ss_pred             CHHHHHHHHhcCCceEEecC
Confidence            99999999999999999864

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=99.98  E-value=6e-32  Score=235.30  Aligned_cols=163  Identities=20%  Similarity=0.334  Sum_probs=141.7

Q ss_pred             CCccccceeeCCCeEEEEeCCCC--CCCcccC-ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEE
Q 018395            6 TPKLAKQVYGGNGGSYHAWCPNE--LPMLRQG-NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVV   82 (356)
Q Consensus         6 ~~~~~~~~~~~~~G~i~~~~~~~--~p~l~~~-~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~   82 (356)
                      +....++++++++|+++.++..+  .+.|++. ++++.+++|+||++..|||++|+|++||++|+|++++++++++ .++
T Consensus         7 ~~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~v~~v~~~~~-~~~   85 (178)
T d1dgwa_           7 RSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGR-DTY   85 (178)
T ss_dssp             CGGGEEEEEEETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEE-EEE
T ss_pred             cccccccceECCCCcEEEecccCCcchhccCccceEEEEEEecCCcccccccCCCCEEEEEEEeEEEEEEecCCce-EEE
Confidence            34556789999999999887533  4667775 7999999999999999997799999999999999999999875 569


Q ss_pred             EEcCCCEEEeCCCcEEEEEecC-CCcEEEEEEeeCCCCCCCCceeEEeeccc---ccccccCcHHHHHhhccCCHHHHHH
Q 018395           83 AIKKGDGIALPFGVVTWWYNKE-DTELVVLFLGDTSKGHKAGEFTNFFLTGA---NGIFTGFSTEFVSRAWDLDENTVKT  158 (356)
Q Consensus        83 ~l~~GDv~~iP~G~~H~~~N~g-~e~l~~l~i~~~~~~~~pg~~~~f~lag~---~s~l~~~~~~vl~~af~~~~~~~~~  158 (356)
                      +|++||+++||+|++||++|.+ ++++.++++.+++  ++++.++.|+++|.   .|||++||++||++|||++.++++|
T Consensus        86 ~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~~~~--n~~~~~~~f~~~~~~~~~svl~~~~~evL~~aF~v~~e~~~k  163 (178)
T d1dgwa_          86 KLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITF--RRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQ  163 (178)
T ss_dssp             EEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECC--SSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHH
T ss_pred             EecCCCEEEECCCCeEEEEECCCCCCEEEEEEecCC--CCCccccccccccccCcccHHHhCCHHHHHHHhCCCHHHHHH
Confidence            9999999999999999999975 5689999998876  56788889999864   5899999999999999999999999


Q ss_pred             hhcc-cCCceEEEc
Q 018395          159 LVGK-QTGKGIVKL  171 (356)
Q Consensus       159 l~~~-q~~~~iv~~  171 (356)
                      |+.+ ++++.|+|+
T Consensus       164 l~~~~~~~g~Iv~~  177 (178)
T d1dgwa_         164 TLLQEEQEGVIVKM  177 (178)
T ss_dssp             HTTSCCSSSSEEEC
T ss_pred             HHhcccCCCcEEeC
Confidence            9755 456789875

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.97  E-value=2.9e-32  Score=236.02  Aligned_cols=149  Identities=21%  Similarity=0.330  Sum_probs=131.1

Q ss_pred             cceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCce-EEEEEcCCC
Q 018395           11 KQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEE-KVVAIKKGD   88 (356)
Q Consensus        11 ~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~-~~~~l~~GD   88 (356)
                      ..++.+++|++..++..++|.|++.+++++++.|.||+++.|||| +|+||+||++|+++++++++++++ .+.+|++||
T Consensus        21 ~d~~n~~gG~i~~~~~~~fP~L~~lgls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~Gd  100 (173)
T d1od5a2          21 ADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQ  100 (173)
T ss_dssp             CSEEETTTEEEEEESTTTCTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTC
T ss_pred             CCccCCCCeEEEEecHHHhhhhhhccceEEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCceEEeEEecCCc
Confidence            357889999999999999999999999999999999999999999 999999999999999999988743 357899999


Q ss_pred             EEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceE
Q 018395           89 GIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGI  168 (356)
Q Consensus        89 v~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~i  168 (356)
                      +++||+|++||+.|. ++.++++++..+   .++   ..+   +..+||++||++||+++|+++.+++++|+.+|+++.|
T Consensus       101 v~~iP~G~~h~~~n~-~~~~~~v~~~~~---~~~---~~~---~~~s~l~~~p~evl~~af~v~~e~v~~lk~~~~~~~i  170 (173)
T d1od5a2         101 LLVVPQNFVVAEQGG-EQGLEYVVFKTH---HNA---VSS---YIKDVFRAIPSEVLSNSYNLGQSQVRQLKYQGNSGPL  170 (173)
T ss_dssp             EEEECTTCEEEEEEE-EEEEEEEEEESS---TTC---CEE---EHHHHHHHSCHHHHHHHHTCCHHHHHHHHHSSCSSSE
T ss_pred             EEEECCCCEEEEEcC-CCceEEEEeecC---Cch---hhh---hHHHHHHhCCHHHHHHHhCcCHHHHHHHHhcCCCCcc
Confidence            999999999999885 456888887653   222   222   3359999999999999999999999999999988888


Q ss_pred             E
Q 018395          169 V  169 (356)
Q Consensus       169 v  169 (356)
                      +
T Consensus       171 ~  171 (173)
T d1od5a2         171 V  171 (173)
T ss_dssp             E
T ss_pred             c
Confidence            7

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.97  E-value=1.4e-31  Score=236.98  Aligned_cols=165  Identities=15%  Similarity=0.243  Sum_probs=142.1

Q ss_pred             cccceeeCCCeEEEEeCCC--CCCCccc-CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceE-----
Q 018395            9 LAKQVYGGNGGSYHAWCPN--ELPMLRQ-GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEK-----   80 (356)
Q Consensus         9 ~~~~~~~~~~G~i~~~~~~--~~p~l~~-~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~-----   80 (356)
                      ..++++++++|+++.+...  ..+.|++ .++++..++|+||+++.|||++|++++||++|+|++++++++|...     
T Consensus        11 ~f~~~~~~e~G~i~~l~~f~~~~~~l~~l~~~~v~~~~i~P~~l~lP~~~nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~   90 (200)
T d2phla1          11 SWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLT   90 (200)
T ss_dssp             TEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEE
T ss_pred             cccceeECCCccEEEeccccccchhhhcccceEEEEEEecCCceeeeecCCCCEEEEEEeeeEEEEEEECCCCceeehhh
Confidence            4568999999999998763  3467777 4799999999999999999999999999999999999999998643     


Q ss_pred             EEEEcCCCEEEeCCCcEEEEEecC-CCcEEEEEEeeCCCCCCCCceeEEeeccc---ccccccCcHHHHHhhccCCHHHH
Q 018395           81 VVAIKKGDGIALPFGVVTWWYNKE-DTELVVLFLGDTSKGHKAGEFTNFFLTGA---NGIFTGFSTEFVSRAWDLDENTV  156 (356)
Q Consensus        81 ~~~l~~GDv~~iP~G~~H~~~N~g-~e~l~~l~i~~~~~~~~pg~~~~f~lag~---~s~l~~~~~~vl~~af~~~~~~~  156 (356)
                      ..+|++||+++||+|++||++|.+ +++|+++++.++.+  ++ .+.+|||||.   .|+|++||+++|++|||++.+++
T Consensus        91 ~~~l~~GDv~~iPaG~~~~~~n~~~~~~l~~~~l~~~~n--~~-~~~~f~lag~~~~~svl~~f~~evLa~aF~v~~e~~  167 (200)
T d2phla1          91 SDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVN--NP-QIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEI  167 (200)
T ss_dssp             SSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESS--SS-SCCEEECCCBTTBCCGGGGSCHHHHHHHHTSCHHHH
T ss_pred             ccCccCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCC--CC-ccccceeccccccccHhHcCCHHHHHHHcCCCHHHH
Confidence            236899999999999999999975 56899999988763  34 3578999986   48999999999999999999999


Q ss_pred             HHhhc---ccCCceEEEcCCCCc
Q 018395          157 KTLVG---KQTGKGIVKLDANAK  176 (356)
Q Consensus       157 ~~l~~---~q~~~~iv~~~~~~~  176 (356)
                      ++|+.   +|+++.|++++++|.
T Consensus       168 ~kl~~~~~~q~~g~Iv~~~~eq~  190 (200)
T d2phla1         168 NRVLFEEEGQQEGVIVNIDSEQI  190 (200)
T ss_dssp             HHHHTCSTTCBSSSEEECCTTTH
T ss_pred             HHHHhccccccCCceEEcCHHHH
Confidence            99974   356789999987753

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.97  E-value=1.5e-31  Score=229.04  Aligned_cols=144  Identities=16%  Similarity=0.245  Sum_probs=123.6

Q ss_pred             cCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCce------EEEEEec
Q 018395          201 IKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKR------VLETTVK  274 (356)
Q Consensus       201 ~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~------~~~~~l~  274 (356)
                      +|+.|.+++++.      ++|++++++++|+||+|++||||++ |+||+||++|+++++|++|+|++      +++.+|+
T Consensus         4 ~n~fg~~~~~~~------n~l~~~v~~~~l~p~~~~~PH~h~~-A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~   76 (162)
T d2phla2           4 GNEFGNLTERTD------NSLNVLISSIEMEEGALFVPHYYSK-AIVILVVNEGEAHVELVGPKGNKETLEYESYRAELS   76 (162)
T ss_dssp             EETTEEEEEEEE------TTTTEEEEEEEECTTEEEEEEEESS-CEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEE
T ss_pred             ccccCceeecCC------CCCCeEEEEEEECCCcEeCCccCCC-CCEEEEEEEeeeEEEEEecCCccccccceeeEeeec
Confidence            578999999884      6679999999999999999999999 99999999999999999998854      7889999


Q ss_pred             CCcEEEEcCCcEEEEeeCCCCeEEEEEE-cCCCCceeccccccc------cccCCCHHHHHHHcCCCHHHHHHHHhcCCC
Q 018395          275 AGNLFIVPRFYVVSKIADPDGLAWFSII-TTPNPIFTHLAGSIG------TWKSLSPSVLEAAFNVPSDVEKQFRSKRAN  347 (356)
Q Consensus       275 ~Gdv~vvP~g~~h~~~~~~~~~~~~~~~-~~~~p~~~~laG~~s------~l~~~p~~vl~~af~~~~~~~~~l~~~~~~  347 (356)
                      +|||++||+|++||+.+. ++.+++++. ++.+....++||..+      +++++|++||++||+++.+++++|+..+++
T Consensus        77 ~Gdv~vvP~G~~~~~~n~-~~~~~v~~~~~~~~~~~~flaG~~~sv~~~~~~~~~~~evL~~aF~v~~eevekl~~~q~e  155 (162)
T d2phla2          77 KDDVFVIPAAYPVAIKAT-SNVNFTGFGINANNNNRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSG  155 (162)
T ss_dssp             TTCEEEECTTCCEEEEES-SSEEEEEEEESCTTCCEEESSSSSSBHHHHHHTSTTHHHHHHHHSSSCHHHHHHHHTTCCC
T ss_pred             CCcEEEECCCCEEEEEeC-CCceEEEEEecCCCCcceeecCccccchhhhcccCCCHHHHHHHhCCCHHHHHHHHhhCCc
Confidence            999999999999999775 356677663 344456778888753      346789999999999999999999999988


Q ss_pred             eEEec
Q 018395          348 EAIFF  352 (356)
Q Consensus       348 ~~~~~  352 (356)
                      +.|+-
T Consensus       156 ~~~v~  160 (162)
T d2phla2         156 SYFVD  160 (162)
T ss_dssp             CSEEE
T ss_pred             eEEEe
Confidence            87764

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.97  E-value=3.7e-31  Score=234.45  Aligned_cols=157  Identities=18%  Similarity=0.347  Sum_probs=134.6

Q ss_pred             CCccccceeeCCCeEEEEeCCCCC--CCccc-CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEE
Q 018395            6 TPKLAKQVYGGNGGSYHAWCPNEL--PMLRQ-GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVV   82 (356)
Q Consensus         6 ~~~~~~~~~~~~~G~i~~~~~~~~--p~l~~-~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~   82 (356)
                      +....++++++++|+++.++..+.  +.|++ .+++++.++|+||++..|||++|++++||++|+|+++++++++. .++
T Consensus         6 ~~~~~~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~~~~v~~~~~-~~~   84 (203)
T d1uika1           6 NSKRFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHADADYLIVILNGTAILTLVNNDDR-DSY   84 (203)
T ss_dssp             CGGGEEEEEECSSEEEEEECCTTSSCGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEECSSCE-EEE
T ss_pred             ccccccCceECCCCeEEEecccCccchhhccccceEEEEEEecCCCccccccCCCcEEEEEEEEEEEEEEEeCCCe-EEE
Confidence            345567899999999999876442  45654 48999999999999999998899999999999999999999876 469


Q ss_pred             EEcCCCEEEeCCCcEEEEEecCC-CcEEEEEEeeCCCCCCCCceeEEeeccc---ccccccCcHHHHHhhccCCHHHHHH
Q 018395           83 AIKKGDGIALPFGVVTWWYNKED-TELVVLFLGDTSKGHKAGEFTNFFLTGA---NGIFTGFSTEFVSRAWDLDENTVKT  158 (356)
Q Consensus        83 ~l~~GDv~~iP~G~~H~~~N~g~-e~l~~l~i~~~~~~~~pg~~~~f~lag~---~s~l~~~~~~vl~~af~~~~~~~~~  158 (356)
                      +|++||+++||+|++||++|.++ ++|.++++.+++  +.++.+..||++|.   .++|++||++||++||+++.+++++
T Consensus        85 ~l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~~~~--n~~~~~~~f~~~g~~~~~~vl~gf~~~vL~~aF~v~~e~~~k  162 (203)
T d1uika1          85 NLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPV--NKPGRFESFFLSSTQAQQSYLQGFSKNILEASYDTKFEEINK  162 (203)
T ss_dssp             EEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEES--SBTTBCCEEECSCCSSCCCGGGGSCHHHHHHHHTSCHHHHHH
T ss_pred             EecCCCEEEECCCCeEEEEECCCCccEEEEEEecCC--CCcccccccccccCccccchhHhCCHHHHHHHhCCCHHHHHH
Confidence            99999999999999999999775 589999988865  44667889999875   4899999999999999999999999


Q ss_pred             hhcccCC
Q 018395          159 LVGKQTG  165 (356)
Q Consensus       159 l~~~q~~  165 (356)
                      |+.+|.+
T Consensus       163 l~~~q~~  169 (203)
T d1uika1         163 VLFGREE  169 (203)
T ss_dssp             HTTC---
T ss_pred             HHhcccc
Confidence            9877654

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.97  E-value=4.4e-30  Score=221.76  Aligned_cols=150  Identities=19%  Similarity=0.388  Sum_probs=132.6

Q ss_pred             cccceeeCCCeEEEEeCC--CCCCCcccC-ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEc
Q 018395            9 LAKQVYGGNGGSYHAWCP--NELPMLRQG-NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIK   85 (356)
Q Consensus         9 ~~~~~~~~~~G~i~~~~~--~~~p~l~~~-~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~   85 (356)
                      ..++++++++|+++.++.  ...|.|++. ++++.+++|+||+++.|||++|+|++||++|+|+++++++++.+ +++|+
T Consensus        13 ~f~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~~~~Ph~~~a~ei~yV~~G~g~v~~v~~~~~~-~~~l~   91 (170)
T d1uija1          13 SFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD-SYNLH   91 (170)
T ss_dssp             SEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE-EEEEC
T ss_pred             ccccccccCCCcEEEEecccccchhhcchhheEEEEEEecCCcccccccCCCCEEEEEEEEEEEEEEEeCCCcE-EEEec
Confidence            345789999999998875  235788886 69999999999999999988999999999999999999998764 68999


Q ss_pred             CCCEEEeCCCcEEEEEecCC-CcEEEEEEeeCCCCCCCCceeEEeeccc---ccccccCcHHHHHhhccCCHHHHHHhhc
Q 018395           86 KGDGIALPFGVVTWWYNKED-TELVVLFLGDTSKGHKAGEFTNFFLTGA---NGIFTGFSTEFVSRAWDLDENTVKTLVG  161 (356)
Q Consensus        86 ~GDv~~iP~G~~H~~~N~g~-e~l~~l~i~~~~~~~~pg~~~~f~lag~---~s~l~~~~~~vl~~af~~~~~~~~~l~~  161 (356)
                      +||+++||+|++||++|.++ +.+.++++..++  ++|+.++.|+++|.   .|||++||++||++||++++++++||+.
T Consensus        92 ~GDv~~vP~G~~h~~~n~~~~~~l~iv~~~~~~--n~~~~~~~f~~~~~~~~~svl~~~~~evLa~aF~v~~e~i~kl~~  169 (170)
T d1uija1          92 PGDAQRIPAGTTYYLVNPHDHQNLKMIWLAIPV--NKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLF  169 (170)
T ss_dssp             TTEEEEECTTCEEEEEECCSSCCEEEEEEEEES--SBTTBCCEEESSCBSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHT
T ss_pred             CCcEEEECCCCeEEEEEcCCCCcEEEEEecCCc--CCCccccccccccCCCcccHhHhCCHHHHHHHhCCCHHHHHHHhc
Confidence            99999999999999999875 478888877765  56888999999875   5999999999999999999999999873

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=99.96  E-value=7.6e-29  Score=215.53  Aligned_cols=164  Identities=16%  Similarity=0.169  Sum_probs=131.9

Q ss_pred             CCceeeccCCCCCcccCCCcEEEEeCC--CCCCCcccc-CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEc
Q 018395          186 DGMAFNCEEAPLDVDIKNGGRVVLLNT--KNLPLVGEV-GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG  262 (356)
Q Consensus       186 ~~~~~~l~~~~~~~~~~~gG~~~~~~~--~~~p~l~~l-~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~  262 (356)
                      +++.|+....++.+ ++++|+++.++.  .+.+.|+++ ++++++++|+||+|+.||| ++ |+||.||++|++++++++
T Consensus         2 npy~F~~~~~~~~~-~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~-~~-a~ev~yV~~G~g~v~~v~   78 (178)
T d1dgwa_           2 NPYLFRSNKFLTLF-KNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHH-SD-SDLLVLVLEGQAILVLVN   78 (178)
T ss_dssp             CTTEECGGGEEEEE-EETTEEEEEECCTTSSCGGGGGGTTEEEEEEEECTTEEEEEEE-ES-SEEEEEEEESEEEEEEEE
T ss_pred             CCeeccccccccce-ECCCCcEEEecccCCcchhccCccceEEEEEEecCCccccccc-CC-CCEEEEEEEeEEEEEEec
Confidence            46678877666655 689999988764  445678887 4899999999999999995 88 999999999999999999


Q ss_pred             cCCceEEEEEecCCcEEEEcCCcEEEEee-C-CCCeEEEEEEcCCC---Cceec-ccc---ccccccCCCHHHHHHHcCC
Q 018395          263 PDGKRVLETTVKAGNLFIVPRFYVVSKIA-D-PDGLAWFSIITTPN---PIFTH-LAG---SIGTWKSLSPSVLEAAFNV  333 (356)
Q Consensus       263 ~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~-~~~~~~~~~~~~~~---p~~~~-laG---~~s~l~~~p~~vl~~af~~  333 (356)
                      +++.  .+.+|++|||++||+|++||+.+ + ++++.++++....+   ....+ ++|   ..|+|+++|++||++||++
T Consensus        79 ~~~~--~~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i~~~~~~~n~~~~~~~f~~~~~~~~~svl~~~~~evL~~aF~v  156 (178)
T d1dgwa_          79 PDGR--DTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDS  156 (178)
T ss_dssp             TTEE--EEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEEEECCSSTTCCCEEESSCCSSCCCGGGGSCHHHHHHHHTS
T ss_pred             CCce--EEEEecCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccccccccccCcccHHHhCCHHHHHHHhCC
Confidence            9753  46789999999999999999954 4 46899988864322   12223 333   4589999999999999999


Q ss_pred             CHHHHHHHH-hcCCCeEEecCC
Q 018395          334 PSDVEKQFR-SKRANEAIFFPP  354 (356)
Q Consensus       334 ~~~~~~~l~-~~~~~~~~~~~p  354 (356)
                      +.++++++. .++++..|+..|
T Consensus       157 ~~e~~~kl~~~~~~~g~Iv~~P  178 (178)
T d1dgwa_         157 PYDEIEQTLLQEEQEGVIVKMP  178 (178)
T ss_dssp             CHHHHHHHTTSCCSSSSEEECC
T ss_pred             CHHHHHHHHhcccCCCcEEeCc
Confidence            999998875 455677888877

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.96  E-value=1.2e-28  Score=210.93  Aligned_cols=146  Identities=16%  Similarity=0.187  Sum_probs=121.8

Q ss_pred             eeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCc-------eEEEEE
Q 018395           13 VYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKE-------EKVVAI   84 (356)
Q Consensus        13 ~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~-------~~~~~l   84 (356)
                      .+.++.|.+...+.      +..++++.+++|+||+++.|||| +|++++||++|++++++++++++       ..+.+|
T Consensus         2 ~~~n~fg~~~~~~~------n~l~~~v~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l   75 (162)
T d2phla2           2 TIGNEFGNLTERTD------NSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAEL   75 (162)
T ss_dssp             EEEETTEEEEEEEE------TTTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEE
T ss_pred             ccccccCceeecCC------CCCCeEEEEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeee
Confidence            46788898887764      34689999999999999999999 99999999999999999998764       346799


Q ss_pred             cCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeecccc------cccccCcHHHHHhhccCCHHHHHH
Q 018395           85 KKGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGAN------GIFTGFSTEFVSRAWDLDENTVKT  158 (356)
Q Consensus        85 ~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~------s~l~~~~~~vl~~af~~~~~~~~~  158 (356)
                      ++||+++||+|++||+.|.+++  .++++..++. .+    ..+|+||..      .++++||+|||++||+++.++++|
T Consensus        76 ~~Gdv~vvP~G~~~~~~n~~~~--~~v~~~~~~~-~~----~~~flaG~~~sv~~~~~~~~~~~evL~~aF~v~~eevek  148 (162)
T d2phla2          76 SKDDVFVIPAAYPVAIKATSNV--NFTGFGINAN-NN----NRNLLAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMK  148 (162)
T ss_dssp             ETTCEEEECTTCCEEEEESSSE--EEEEEEESCT-TC----CEEESSSSSSBHHHHHHTSTTHHHHHHHHSSSCHHHHHH
T ss_pred             cCCcEEEECCCCEEEEEeCCCc--eEEEEEecCC-CC----cceeecCccccchhhhcccCCCHHHHHHHhCCCHHHHHH
Confidence            9999999999999999998764  4555544431 22    356777753      256789999999999999999999


Q ss_pred             hhcccCCceEEEc
Q 018395          159 LVGKQTGKGIVKL  171 (356)
Q Consensus       159 l~~~q~~~~iv~~  171 (356)
                      |+++|++++|+++
T Consensus       149 l~~~q~e~~~v~a  161 (162)
T d2phla2         149 LINKQSGSYFVDA  161 (162)
T ss_dssp             HHTTCCCCSEEEC
T ss_pred             HHhhCCceEEEeC
Confidence            9999999999986

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=99.95  E-value=5.7e-28  Score=213.22  Aligned_cols=146  Identities=17%  Similarity=0.277  Sum_probs=126.6

Q ss_pred             ccceeeCCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcC---CCceEEEEEc
Q 018395           10 AKQVYGGNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLP---EKEEKVVAIK   85 (356)
Q Consensus        10 ~~~~~~~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~---~~~~~~~~l~   85 (356)
                      +.......+|.+..++..++|.|++.++++++++|.||++.+|||| +++|++||++|+++++++.+   +++..+.+|+
T Consensus        45 ~~~~~~~~g~~vt~~~~~~fP~Ln~lglS~~rv~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~  124 (201)
T d2et1a1          45 AGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVR  124 (201)
T ss_dssp             CCCCCSTTSEEEEEESTTTCGGGTTSSCEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEEC
T ss_pred             CCCccCCCCcEEEEeehhcCccccccceeEEEEEECCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEec
Confidence            3345567899999999999999999999999999999999999999 99999999999999999864   4567788999


Q ss_pred             CCCEEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCCceeEEeeccccccc---ccCcHHHHHhhccCCHHHHHHhhcc
Q 018395           86 KGDGIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAGEFTNFFLTGANGIF---TGFSTEFVSRAWDLDENTVKTLVGK  162 (356)
Q Consensus        86 ~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l---~~~~~~vl~~af~~~~~~~~~l~~~  162 (356)
                      +||+++||+|++||++|.+++++.+++++.+   ++||...   ++  ..++   .+||.|||+++|+++++++++|+++
T Consensus       125 ~GDv~vvP~G~~H~~~N~g~~~a~~i~~f~s---~~pg~~~---~~--~~~f~~~~~~p~eVLa~af~i~~~~v~kLks~  196 (201)
T d2et1a1         125 AGETFVIPRGLMHFQFNVGKTEAYMVVSFNS---QNPGIVF---VP--LTLFGSDPPIPTPVLTKALRVEAGVVELLKSK  196 (201)
T ss_dssp             TTCEEEECTTCCEEEEECSSSCEEEEEEESS---SCCCCEE---HH--HHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred             CCCEEEECCCCeEEEEEcCCCCEEEEEEecC---CCCccee---hh--hhhhccCCCCCHHHHHHHhCCCHHHHHHHHhh
Confidence            9999999999999999999999999887753   5787543   22  2333   4699999999999999999999865


Q ss_pred             c
Q 018395          163 Q  163 (356)
Q Consensus       163 q  163 (356)
                      -
T Consensus       197 f  197 (201)
T d2et1a1         197 F  197 (201)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=99.95  E-value=2.9e-27  Score=208.98  Aligned_cols=167  Identities=16%  Similarity=0.135  Sum_probs=133.4

Q ss_pred             CCceeeccCC-CCCcccCCCcEEEEeCC--CCCCCcccc-CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEE
Q 018395          186 DGMAFNCEEA-PLDVDIKNGGRVVLLNT--KNLPLVGEV-GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIV  261 (356)
Q Consensus       186 ~~~~~~l~~~-~~~~~~~~gG~~~~~~~--~~~p~l~~l-~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv  261 (356)
                      +++.|+.... ++. +.+++|+++.++.  .+.+.|+.| +++++++.|+||||+.||| ++ |++|+||++|+|+++|+
T Consensus         2 np~~f~~~~~f~~~-~~~e~G~i~~l~~f~~~~~~l~~l~~~~v~~~~i~P~~l~lP~~-~n-A~~i~yV~~G~G~v~~v   78 (200)
T d2phla1           2 NPFYFNSDNSWNTL-FKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQ-AD-AELLLVVRSGSAILVLV   78 (200)
T ss_dssp             CTTEECGGGTEEEE-EEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEE-ES-EEEEEEEEESEEEEEEE
T ss_pred             CCeecCchhcccce-eECCCccEEEeccccccchhhhcccceEEEEEEecCCceeeeec-CC-CCEEEEEEeeeEEEEEE
Confidence            4556655433 343 4689999999986  356778877 5889999999999999998 58 99999999999999999


Q ss_pred             ccCCceEEE----EEecCCcEEEEcCCcEEEEee-C-CCCeEEEEEEcC---CCCceecccccc---ccccCCCHHHHHH
Q 018395          262 GPDGKRVLE----TTVKAGNLFIVPRFYVVSKIA-D-PDGLAWFSIITT---PNPIFTHLAGSI---GTWKSLSPSVLEA  329 (356)
Q Consensus       262 ~~~g~~~~~----~~l~~Gdv~vvP~g~~h~~~~-~-~~~~~~~~~~~~---~~p~~~~laG~~---s~l~~~p~~vl~~  329 (356)
                      +|++.+.+.    .+|++|||++||+|++||+.+ + +++++++.+.++   .++...++||..   |+|++++.+||++
T Consensus        79 ~p~~~~~~~~~~~~~l~~GDv~~iPaG~~~~~~n~~~~~~l~~~~l~~~~n~~~~~~f~lag~~~~~svl~~f~~evLa~  158 (200)
T d2phla1          79 KPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEA  158 (200)
T ss_dssp             ETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEEEEEEESSSSSCCEEECCCBTTBCCGGGGSCHHHHHH
T ss_pred             ECCCCceeehhhccCccCCCEEEECCCCeEEEEECCCCCCEEEEEEecCCCCCccccceeccccccccHhHcCCHHHHHH
Confidence            999866442    269999999999999999954 5 568999887533   334556788754   8999999999999


Q ss_pred             HcCCCHHHHHHHHh---cCCCeEEecCCC
Q 018395          330 AFNVPSDVEKQFRS---KRANEAIFFPPP  355 (356)
Q Consensus       330 af~~~~~~~~~l~~---~~~~~~~~~~p~  355 (356)
                      ||+++.+++++|..   .+++..|+..++
T Consensus       159 aF~v~~e~~~kl~~~~~~q~~g~Iv~~~~  187 (200)
T d2phla1         159 SFNSKFEEINRVLFEEEGQQEGVIVNIDS  187 (200)
T ss_dssp             HHTSCHHHHHHHHTCSTTCBSSSEEECCT
T ss_pred             HcCCCHHHHHHHHhccccccCCceEEcCH
Confidence            99999999999964   345566776653

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=1.6e-27  Score=228.95  Aligned_cols=139  Identities=19%  Similarity=0.252  Sum_probs=127.9

Q ss_pred             CCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEE
Q 018395          202 KNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIV  281 (356)
Q Consensus       202 ~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vv  281 (356)
                      ..|||+++++..+||+|+  +|++++++|+||||++||||++ | ||.||++|++++++++++|+. +..+|++||+++|
T Consensus        53 ~~gg~~r~~~~~~lp~~~--~~a~~~~~L~pga~~~pH~H~~-a-e~~yVl~G~~~vt~Vd~~G~~-~~~~l~~GDv~~~  127 (372)
T d1j58a_          53 EKGGYAREVTVRELPISE--NLASVNMRLKPGAIRELHWHKE-A-EWAYMIYGSARVTIVDEKGRS-FIDDVGEGDLWYF  127 (372)
T ss_dssp             ETTEEEEEECTTTCTTCS--SCEEEEEEECTTCEEEEEEESS-C-EEEEEEEEEEEEEEECTTSCE-EEEEEETTEEEEE
T ss_pred             cCCCeeEEeehhhChhhh--hhhheEEEECCCcCcCCcccCc-c-cEEEEEeCEEEEEEEeCCCcE-EEEEeccCCEEEE
Confidence            679999999999999998  5899999999999999999987 7 899999999999999999865 4568999999999


Q ss_pred             cCCcEEEEeeCCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHHHHHHhcC
Q 018395          282 PRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKR  345 (356)
Q Consensus       282 P~g~~h~~~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~~~l~~~~  345 (356)
                      |+|++|++.+.+++++|+.++++.++.....++.+++++++|.+||+++|+++.+.+++++.++
T Consensus       128 P~G~~H~i~n~~dg~e~l~vf~~~~~~~~~~f~~~~~~~~~p~evLa~af~v~~~~~~~i~~~e  191 (372)
T d1j58a_         128 PSGLPHSIQALEEGAEFLLVFDDGSFSENSTFQLTDWLAHTPKEVIAANFGVTKEEISNLPGKE  191 (372)
T ss_dssp             CTTCCEEEEEEEEEEEEEEEESCTTCCGGGEEEHHHHHHTSCHHHHHHHHTCCTGGGTTSCSSC
T ss_pred             CCCCEEEEEeCCCCcEEEEEECCCCcccccceeeccccccCCHHHHHHhhCCCHHHHhhccccc
Confidence            9999999988888999999999888877667777899999999999999999999999997654

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=99.94  E-value=1.8e-26  Score=198.84  Aligned_cols=140  Identities=15%  Similarity=0.196  Sum_probs=115.6

Q ss_pred             ccCCCcEEEEeCC--CCCCCccccC-ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCC
Q 018395          200 DIKNGGRVVLLNT--KNLPLVGEVG-CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAG  276 (356)
Q Consensus       200 ~~~~gG~~~~~~~--~~~p~l~~l~-~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~G  276 (356)
                      +++++|+++.++.  .+.|.|+.++ +++++++|+||||+.||| ++ |+||.||++|+++++++++++..  +.+|++|
T Consensus        18 ~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~~~~Ph~-~~-a~ei~yV~~G~g~v~~v~~~~~~--~~~l~~G   93 (170)
T d1uija1          18 FENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHH-AD-ADFLLFVLSGRAILTLVNNDDRD--SYNLHPG   93 (170)
T ss_dssp             EECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEE-ES-EEEEEEEEESCEEEEEECSSCEE--EEEECTT
T ss_pred             cccCCCcEEEEecccccchhhcchhheEEEEEEecCCccccccc-CC-CCEEEEEEEEEEEEEEEeCCCcE--EEEecCC
Confidence            4689999999876  4568888885 999999999999999995 78 99999999999999999998754  5689999


Q ss_pred             cEEEEcCCcEEEEee-CC-CCeEEEEEEc-CCCC--ceec-cccc---cccccCCCHHHHHHHcCCCHHHHHHHHh
Q 018395          277 NLFIVPRFYVVSKIA-DP-DGLAWFSIIT-TPNP--IFTH-LAGS---IGTWKSLSPSVLEAAFNVPSDVEKQFRS  343 (356)
Q Consensus       277 dv~vvP~g~~h~~~~-~~-~~~~~~~~~~-~~~p--~~~~-laG~---~s~l~~~p~~vl~~af~~~~~~~~~l~~  343 (356)
                      ||++||+|++||+.+ ++ +.+.++.+.. +.++  ...+ ++|.   .|+|+++|++||++||+++.+++++|..
T Consensus        94 Dv~~vP~G~~h~~~n~~~~~~l~iv~~~~~~n~~~~~~~f~~~~~~~~~svl~~~~~evLa~aF~v~~e~i~kl~~  169 (170)
T d1uija1          94 DAQRIPAGTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLF  169 (170)
T ss_dssp             EEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEESSCBSSCCCGGGGSCHHHHHHHHTSCHHHHHHHHT
T ss_pred             cEEEECCCCeEEEEEcCCCCcEEEEEecCCcCCCccccccccccCCCcccHhHhCCHHHHHHHhCCCHHHHHHHhc
Confidence            999999999999955 54 5678777642 2222  2223 4432   4999999999999999999999998863

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=99.93  E-value=7.5e-26  Score=200.07  Aligned_cols=157  Identities=16%  Similarity=0.205  Sum_probs=123.7

Q ss_pred             CCceeeccCCCCCcccCCCcEEEEeCCCCC--CCcccc-CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEc
Q 018395          186 DGMAFNCEEAPLDVDIKNGGRVVLLNTKNL--PLVGEV-GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVG  262 (356)
Q Consensus       186 ~~~~~~l~~~~~~~~~~~gG~~~~~~~~~~--p~l~~l-~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~  262 (356)
                      +++.|+..+.++.+ ++.+|+++.++..+.  +.|.++ ++++++++|+||||+.||| ++ |+||.||++|++++++++
T Consensus         1 npy~F~~~~~~~~~-~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~l~~Ph~-~~-a~ev~yV~~G~g~~~~v~   77 (203)
T d1uika1           1 NPFHFNSKRFQTLF-KNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHH-AD-ADYLIVILNGTAILTLVN   77 (203)
T ss_dssp             CTTEECGGGEEEEE-ECSSEEEEEECCTTSSCGGGGGGTTCEEEEEEECSSEEEEEEE-ES-EEEEEEEEESEEEEEEEC
T ss_pred             CCeeeccccccCce-ECCCCeEEEecccCccchhhccccceEEEEEEecCCCcccccc-CC-CcEEEEEEEEEEEEEEEe
Confidence            35677766555555 689999999987554  346666 7899999999999999996 58 999999999999999999


Q ss_pred             cCCceEEEEEecCCcEEEEcCCcEEEEee-CC-CCeEEEEEEc---CCCCceec-cccc---cccccCCCHHHHHHHcCC
Q 018395          263 PDGKRVLETTVKAGNLFIVPRFYVVSKIA-DP-DGLAWFSIIT---TPNPIFTH-LAGS---IGTWKSLSPSVLEAAFNV  333 (356)
Q Consensus       263 ~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~-~~~~~~~~~~---~~~p~~~~-laG~---~s~l~~~p~~vl~~af~~  333 (356)
                      +++..  +.+|++|||++||+|++||+.| ++ +.+.++++..   +.+....+ ++|.   .++|++++++||++||++
T Consensus        78 ~~~~~--~~~l~~GDv~~iP~G~~~~~~N~~~~e~l~iv~~~~~~n~~~~~~~f~~~g~~~~~~vl~gf~~~vL~~aF~v  155 (203)
T d1uika1          78 NDDRD--SYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQSYLQGFSKNILEASYDT  155 (203)
T ss_dssp             SSCEE--EEEEETTEEEEECTTCEEEEEECCSSCCEEEEEEEEESSBTTBCCEEECSCCSSCCCGGGGSCHHHHHHHHTS
T ss_pred             CCCeE--EEEecCCCEEEECCCCeEEEEECCCCccEEEEEEecCCCCcccccccccccCccccchhHhCCHHHHHHHhCC
Confidence            98754  5689999999999999999954 54 5788877743   22222333 5543   389999999999999999


Q ss_pred             CHHHHHHHHhcCCC
Q 018395          334 PSDVEKQFRSKRAN  347 (356)
Q Consensus       334 ~~~~~~~l~~~~~~  347 (356)
                      +.+++++|...+.+
T Consensus       156 ~~e~~~kl~~~q~~  169 (203)
T d1uika1         156 KFEEINKVLFGREE  169 (203)
T ss_dssp             CHHHHHHHTTC---
T ss_pred             CHHHHHHHHhcccc
Confidence            99999999766554

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=99.93  E-value=4.1e-25  Score=211.25  Aligned_cols=256  Identities=13%  Similarity=0.024  Sum_probs=168.1

Q ss_pred             CceEEEEEEecCCCc--ccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           35 GNIGAAKLALEKNGF--ALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~--~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      ..+++..+++.||+.  ..|||| +.+|++||++|++++.+.+.++..+...|++||++++|+|++|.+.|.+++ .+++
T Consensus        44 g~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~~l~~GD~~~~P~g~~H~~~n~~~~-~~~l  122 (348)
T d1juha_          44 YAFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPD-TEMT  122 (348)
T ss_dssp             TSCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTT-EEEE
T ss_pred             CeEEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCceEEEEeCCCCEEEECCCCeEeeEeCCCC-cEEE
Confidence            358899999999985  478999 788999999999999887765555668999999999999999999999764 7888


Q ss_pred             EEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhcc------CCHHHHHHhhcc----cCCceEEEcCCC----CcC
Q 018395          112 FLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWD------LDENTVKTLVGK----QTGKGIVKLDAN----AKL  177 (356)
Q Consensus       112 ~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~------~~~~~~~~l~~~----q~~~~iv~~~~~----~~~  177 (356)
                      +++.+      |.++.||.....++.+..+...+...|.      +.....+++.+.    +...........    +..
T Consensus       123 ~v~~p------g~~e~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
T d1juha_         123 GVIVP------GGFEDLFYYLGTNATDTTHTPYIPSSSDSSSTTGPDSSTISTLQSFDVYAELSFTPRTDTVNGTAPANT  196 (348)
T ss_dssp             EEEES------SCTTHHHHHHSEECCCTTCCSSCCC--------------CGGGGGGTCEECTTCCCCCCCBTTEESSSS
T ss_pred             EEECC------CcHHHHHHhhCCchhccCCcccccccccchhhccCChhhhccccccccccccccCCccccccccccccc
Confidence            87763      4456677665556666666555555553      233333333221    111111100000    000


Q ss_pred             CCCCc----ccCCCceeeccCCCCC-cc-cCCCcEEEE---eCCCCCCCccccCceeEEEEecCCCeecccccccCCeeE
Q 018395          178 PEPKK----EHRDGMAFNCEEAPLD-VD-IKNGGRVVL---LNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQV  248 (356)
Q Consensus       178 ~~p~~----~~~~~~~~~l~~~~~~-~~-~~~gG~~~~---~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei  248 (356)
                      .++..    ....+.+|.+...... .. ...+|.+..   .+...++...  .+++..+++.||++..||||.+ ++|+
T Consensus       197 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~i~~~~~~~~~t~~~~~--~~~~~~~~~~pg~~~~~~~~~~-~~e~  273 (348)
T d1juha_         197 VWHTGANALASTAGDPYFIANGWGPKYLNSQYGYQIVAPFVTATQAQDTNY--TLSTISMSTTPSTVTVPTWSFP-GACA  273 (348)
T ss_dssp             CSSSSCCCCCSSTTCCEEECTTCSCEEEECTTSCEEEEEEECHHHHGGGCE--EEEEEEECCCCTTSCCCCBCCS-SCEE
T ss_pred             cccccccccccccCcceEeecccCcccccccCCceEEeeeecccccCCccc--ceeEEEEEecCCCCCCCcccCC-CCEE
Confidence            11110    1123346666543221 11 123444433   2222233222  4778999999999999999999 9999


Q ss_pred             EEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCC
Q 018395          249 TYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTP  305 (356)
Q Consensus       249 ~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~  305 (356)
                      .||++|++++++.+.   +  ..+|++||+++||+|.+|...+......++.+....
T Consensus       274 ~~vleG~~~~~i~~~---~--~~~l~~GD~~~vP~g~~h~~~~~~~~~~~~~~~~~~  325 (348)
T d1juha_         274 FQVQEGRVVVQIGDY---A--ATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSSGS  325 (348)
T ss_dssp             EEEEESCEEEEETTS---C--CEEECTTCEEEECTTCCEEEEESSSSEEEEEEEESS
T ss_pred             EEEEeceEEEEeCCc---c--eEEecCCCEEEECCCCcEEEEeCCCCcEEEEEEcCC
Confidence            999999999999653   2  246999999999999999997766677777776543

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=99.88  E-value=1.5e-22  Score=182.25  Aligned_cols=159  Identities=19%  Similarity=0.260  Sum_probs=128.5

Q ss_pred             eccCCCCCc-ccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCce--
Q 018395          191 NCEEAPLDV-DIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKR--  267 (356)
Q Consensus       191 ~l~~~~~~~-~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~--  267 (356)
                      +|...+|.. ....||.+...+. +-|.|+.+|+++.++.|.|+||+.||| .+ |..|+||++|+|+++|++|.-..  
T Consensus         7 ~L~a~eP~~r~~sE~G~~E~wd~-~~~qlqcagV~~~r~~I~p~gL~lP~y-s~-a~~i~yV~qG~G~~giv~Pgc~et~   83 (245)
T d1od5a1           7 NLNALEPDHRVESEGGLIETWNS-QHPELQCAGVTVSKRTLNRNGLHLPSY-SP-YPQMIIVVQGKGAIGFAFPGCPETF   83 (245)
T ss_dssp             CCCCBCCCEEEEETTEEEEECCT-TSHHHHHHTCEEEEEEECTTEEEEEEE-CS-SCEEEEEEECEEEEEECCTTCCCCE
T ss_pred             ccccCCCchhhcccCCeEEeCCC-CCHHHhhcCceeEEEEEcCCccccccc-cC-CCeEEEEEeCEEEEEEEeCCChhhh
Confidence            455556642 2456887777764 559999999999999999999999999 77 99999999999999999885321  


Q ss_pred             ----------------------EEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEEEEcCCC--------Cceecccccc
Q 018395          268 ----------------------VLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFSIITTPN--------PIFTHLAGSI  316 (356)
Q Consensus       268 ----------------------~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~~~~--------p~~~~laG~~  316 (356)
                                            ....+|++|||++||+|++||+ |.+++++..+++++..|        +..++|||..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~d~~qk~~rl~~GDVi~iPAG~~~w~yNdgn~~Lv~v~~~d~~N~~NQLd~~~r~F~laG~~  163 (245)
T d1od5a1          84 EKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLAGNP  163 (245)
T ss_dssp             EECC---------------EEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEEEEECTTCTTCCSCSSCCCEESSSCC
T ss_pred             cchhhcccccccccccccccceeeeecccCCCEEEECCCceEEEEeCCCCcEEEEEEEcccCcccccCCcceeEEecCCc
Confidence                                  1224699999999999999999 55788999999875443        4566789863


Q ss_pred             ---------------------------------ccccCCCHHHHHHHcCCCHHHHHHHHh-cCCCeEEec
Q 018395          317 ---------------------------------GTWKSLSPSVLEAAFNVPSDVEKQFRS-KRANEAIFF  352 (356)
Q Consensus       317 ---------------------------------s~l~~~p~~vl~~af~~~~~~~~~l~~-~~~~~~~~~  352 (356)
                                                       ++|++++.++||.|||++.+++++|+. .++...|+.
T Consensus       164 ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~nif~gF~~~~La~Af~v~~e~~~klq~~~~~rG~IVr  233 (245)
T d1od5a1         164 DIEHPETMQQQQQQKSHGGRKQGQHQQQEEEGGSVLSGFSKHFLAQSFNTNEDTAEKLRSPDDERKQIVT  233 (245)
T ss_dssp             CCSCTTTTC---------------------CCCCTTTTSCHHHHHHHTTCCHHHHHHTTCTTCCSCSEEE
T ss_pred             ccccchhcccchhhhhcccccccccccccccCCCeeecCCHHHHHHHHCCCHHHHHHHhCcccCCCcEEE
Confidence                                             899999999999999999999999985 344444543

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=2.5e-21  Score=183.32  Aligned_cols=244  Identities=13%  Similarity=0.044  Sum_probs=150.7

Q ss_pred             CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      ..+++..++++||+...+|+| .++|++||++|++++.+   ++  +.+.|++||++++|+|.+|.+.|.+++ .+++.+
T Consensus        40 ~~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~--~~~~l~~Gd~~~~p~~~~H~~~n~~~~-~~~l~~  113 (330)
T d1y3ta1          40 DLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL---DG--ERYLLISGDYANIPAGTPHSYRMQSHR-TRLVSY  113 (330)
T ss_dssp             SSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE---TT--EEEEECTTCEEEECTTCCEEEEECSTT-EEEEEE
T ss_pred             CcEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEEE---CC--EEEEEcCCCEEEeCCCCeEEEEEcCCC-eEEEEE
Confidence            468999999999999999999 78999999999999986   33  348999999999999999999999875 777777


Q ss_pred             eeCCCCCCCCceeEEeecccccccc-cCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCC-CCC----cccCCC
Q 018395          114 GDTSKGHKAGEFTNFFLTGANGIFT-GFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLP-EPK----KEHRDG  187 (356)
Q Consensus       114 ~~~~~~~~pg~~~~f~lag~~s~l~-~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~-~p~----~~~~~~  187 (356)
                      +...      .++.||.+....+-. ..+...   .-....   ++.................... .+.    ......
T Consensus       114 ~~p~------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  181 (330)
T d1y3ta1         114 TMKG------NVAHLYSVIGNPYDHAEHPPYA---SEEVSN---ERFAEAAAVATIVFLDEAKPACSAKLAELTELPDGA  181 (330)
T ss_dssp             EETT------SSTHHHHHHSEECSCSSCCSSC---CCCCTT---CTTGGGTSSCEECCCCCCCSSCSCEECCBCSCCSSS
T ss_pred             ECCc------cHHHhhhhhceecccccCCccc---cccccc---cccccccccccccccccccccccccccccccCCccc
Confidence            6643      222333221110000 000000   000111   1111111111111111110000 000    000111


Q ss_pred             ceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCce
Q 018395          188 MAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKR  267 (356)
Q Consensus       188 ~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~  267 (356)
                      ..+.+....++.+ ..+|.........-....  .+++..+++.||+...||||.. ..|+.||++|++++.+   +|+ 
T Consensus       182 ~~~~~~~~~g~~~-~~~g~~~~~~~~~~~t~~--~~~~~~~~~~~G~~~~~H~H~~-~~e~~~vl~G~~~~~v---~~~-  253 (330)
T d1y3ta1         182 VPYVLESGEGDRL-LTGDQLHRIVAAQKNTDG--QFIVVSSEGPKGDRIVDHYHEY-HTETFYCLEGQMTMWT---DGQ-  253 (330)
T ss_dssp             CCEEECTTCSEEE-EETTEEEEEEECGGGTTT--SCEEEEEEECSCCCCCCEECSS-CEEEEEEEESCEEEEE---TTE-
T ss_pred             eeeEEEcccCceE-ecCCceEEEcCCCcccCC--cEEEEEEEECCCCccCccCcCC-ccEEEEEEecEEEEEE---CCE-
Confidence            2333333333221 113333333222222222  3778899999999999999998 8999999999999976   232 


Q ss_pred             EEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEEcCCC
Q 018395          268 VLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPN  306 (356)
Q Consensus       268 ~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~~~~~  306 (356)
                        ...+++||++++|+|.+|...+.+++++++.+++...
T Consensus       254 --~~~~~~Gd~~~vP~g~~H~~~~~~~~~~~l~~~~p~~  290 (330)
T d1y3ta1         254 --EIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVLVPGL  290 (330)
T ss_dssp             --EEEECTTCEEEECTTCCEEEEECSSSEEEEEEEESST
T ss_pred             --EEEeCCCCEEEECcCCcEEeEeCCCCeEEEEEECCcc
Confidence              3579999999999999999977667899998876543

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=99.87  E-value=7.7e-22  Score=177.04  Aligned_cols=152  Identities=21%  Similarity=0.234  Sum_probs=124.6

Q ss_pred             eccCCCCCc-ccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCc---
Q 018395          191 NCEEAPLDV-DIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK---  266 (356)
Q Consensus       191 ~l~~~~~~~-~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~---  266 (356)
                      +|.+.+|.- ....+|.+...+.+ -+.|+.+|+++.+..|+|+||+.||| .+ |..|+||++|+|+++|++|...   
T Consensus         7 ~L~a~eP~~ri~sE~G~~E~~d~~-~~qlqcagV~~~r~~I~p~gL~lP~y-~~-a~~i~yV~qG~G~~g~v~pgc~et~   83 (239)
T d1fxza1           7 KLNALKPDNRIESEGGLIETWNPN-NKPFQCAGVALSRCTLNRNALRRPSY-TN-GPQEIYIQQGKGIFGMIYPGCPSTF   83 (239)
T ss_dssp             CCCCBCCSCEEEETTEEEEECCTT-SHHHHHHTCEEEEEEECTTEEEEEEE-ES-SCEEEEEEECCEEEEEECTTCCCC-
T ss_pred             ccccCCCchhhccCCceEEecCCC-ChhhhhccchhheeeeccCceeccee-cC-CCeEEEEEeCEEEEEEecCCChhhh
Confidence            456666652 35778977766654 58899999999999999999999999 78 9999999999999999977421   


Q ss_pred             ------------------eEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEEEEcCCC--------Cceeccccc----
Q 018395          267 ------------------RVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFSIITTPN--------PIFTHLAGS----  315 (356)
Q Consensus       267 ------------------~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~~~~--------p~~~~laG~----  315 (356)
                                        +....+|++|||++||+|++||+ |.+++++.++++++..|        +..++|||.    
T Consensus        84 ~~~~~~~~~~~~~~~~d~~qk~~~lr~GDVi~iPAG~~~w~~N~gn~~Lv~v~~~d~~n~~NQLd~~~r~F~laG~~~~e  163 (239)
T d1fxza1          84 EEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVAVSIIDTNSLENQLDQMPRRFYLAGNQEQE  163 (239)
T ss_dssp             -----------------CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEEEEEECTTCTTCCSCSSCCEEESSSSCCCT
T ss_pred             cccccccccccccccchhhhhhhccccCCEEEecCCceEEEEeCCCCcEEEEEEeccccccccccccceeeeccCCcccc
Confidence                              12235899999999999999999 55788999999864333        456678986    


Q ss_pred             --------------------------cccccCCCHHHHHHHcCCCHHHHHHHHhcC
Q 018395          316 --------------------------IGTWKSLSPSVLEAAFNVPSDVEKQFRSKR  345 (356)
Q Consensus       316 --------------------------~s~l~~~p~~vl~~af~~~~~~~~~l~~~~  345 (356)
                                                .|+|++++.++|+.|||++.+++++|...+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~gFs~~~La~Afnv~~e~~~klq~~~  219 (239)
T d1fxza1         164 FLKYQQEQGGHQSQKGKHQQEEENEGGSILSGFTLEFLEHAFSVDKQIAKNLQGEN  219 (239)
T ss_dssp             THHHHC-------------------CCCGGGGSCHHHHHHHHTCCHHHHHHHSCC-
T ss_pred             cccccccccccccccccccccccccCCCcccccCHHHHHHHHCcCHHHHHHHhccc
Confidence                                      389999999999999999999999998654

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=9.8e-22  Score=184.55  Aligned_cols=235  Identities=17%  Similarity=0.143  Sum_probs=153.3

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      .++.++...|+||+...+|+|+.+|+.||++|++.+.+++  +  +...+++||++++|+|..|...|.|++++.++.++
T Consensus        52 ~~l~~~~~~l~PG~~~~~H~H~~~e~~~vl~G~g~~t~~~--~--~~~~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l~~~  127 (308)
T d2d40a1          52 ATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTAVD--G--ERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGL  127 (308)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEECSSCEEEET--T--EEEECCTTCEEEECTTSCEEEECCSSSCEEEEEEE
T ss_pred             ccceeeeEEECCCCccccccCchhheEEEEEeeEEEEEec--C--EEEEecCCCEEEeCCCceEEeEECCCCCEEEEEEe
Confidence            4688999999999999999998899999999999887664  2  24799999999999999999999999999999887


Q ss_pred             eCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCC-----cccCCCce
Q 018395          115 DTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPK-----KEHRDGMA  189 (356)
Q Consensus       115 ~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~-----~~~~~~~~  189 (356)
                      +..      ..+  +| + ..++...+.+.....+..+. ...+..     ..............|.     ....+.+.
T Consensus       128 d~p------l~~--~l-~-~~f~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  191 (308)
T d2d40a1         128 DLP------LVN--IL-G-CGFAEDYPEEQQPVTRKEGD-YLPRYA-----ANMLPLRHQTGNSSPIFNYRYDRSREVLH  191 (308)
T ss_dssp             CHH------HHH--HH-T-CCCEEECC--CCCCCSCTTT-HHHHHS-----SSEECSSCCCCSSCSCCEECHHHHHHHHH
T ss_pred             ccc------hhh--hc-C-eeeeccCcccccccccCccc-hhhhcc-----cccccccccccccCcccccchhhHHHHHH
Confidence            532      001  11 1 13333455555444433222 122211     1111111100000110     00001111


Q ss_pred             eeccCCCCCcccCCCcEEEEeCCCCC-CCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceE
Q 018395          190 FNCEEAPLDVDIKNGGRVVLLNTKNL-PLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRV  268 (356)
Q Consensus       190 ~~l~~~~~~~~~~~gG~~~~~~~~~~-p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~  268 (356)
                      .-....+++  ...++.+...++.+. +.+.+  +++....|.||++..+|+|+  ..++.||++|++++.|   +|++ 
T Consensus       192 ~~~~~~~~~--~~~g~~v~~~~~~~~~~~~~t--~~~~~~~l~pG~~~~~h~h~--~~~~~~v~~G~g~~~v---~~~~-  261 (308)
T d2d40a1         192 DLTRLGDAD--EWDGYKMRYVNPVTGGYPMPS--MGAFLQLLPKGFASRVARTT--DSTIYHVVEGSGQVII---GNET-  261 (308)
T ss_dssp             HHHTTSCCB--TTTBEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCBEES--SCEEEEEEEEEEEEEE---TTEE-
T ss_pred             HHHhccCCC--CCCceEEEeeccccccCccce--eEEEEEEccCCCccCCccCC--hheEEEEEeCcEEEEE---CCEE-
Confidence            111122332  244777777776554 55555  66888899999999999995  5799999999999887   3433 


Q ss_pred             EEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          269 LETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       269 ~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                        .++++||++++|.++.|...+.. +..++.+.
T Consensus       262 --~~~~~GD~~~vP~~~~h~~~~~~-d~~l~~v~  292 (308)
T d2d40a1         262 --FSFSAKDIFVVPTWHGVSFQTTQ-DSVLFSFS  292 (308)
T ss_dssp             --EEEETTCEEEECTTCCEEEEEEE-EEEEEEEE
T ss_pred             --EEEeCCCEEEeCCCCeEEEEcCC-CeEEEEEc
Confidence              47999999999999999986633 34455543

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=99.82  E-value=6.6e-19  Score=167.79  Aligned_cols=239  Identities=16%  Similarity=0.130  Sum_probs=150.5

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      ..+.++...|.||....+|+|+++++.||++|+|..++++  +  +...+++||++++|+|..|...|.+++++.++.++
T Consensus        85 ~~l~~~~~~l~PGe~~~~H~H~~~~~~~vi~G~g~~t~v~--g--~~~~~~~GD~~~~P~~~~H~~~n~~d~~~~~l~~~  160 (351)
T d2phda1          85 PTMWAGIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVN--G--DPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGL  160 (351)
T ss_dssp             SSCEEEEEEECTTCEEEEEEESSCEEEEEEECEEEEEEET--T--EEEEEETTCEEEECTTCCEEEEECSSSCEEEEEEE
T ss_pred             chhhhheEEECCCCcCCccccccceeEEEEECCcEEEEEC--C--EEEEEeCCCEEEeCCCceEEEEEcCCCCEEEEEee
Confidence            4778889999999999999999999999999999877774  2  23799999999999999999999999999999887


Q ss_pred             eCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCc-CCCCC-----cccCC-C
Q 018395          115 DTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAK-LPEPK-----KEHRD-G  187 (356)
Q Consensus       115 ~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~-~~~p~-----~~~~~-~  187 (356)
                      +..-      +.  ++ + .+++..-+... ......+....++....-   .......... ...|.     +..+. -
T Consensus       161 d~pl------~~--~l-~-~~f~e~~~~~~-~~~~~~~~~~~~~~~~~~---~~~p~~~~~~~~~sp~~~yp~~~~~~al  226 (351)
T d2phda1         161 DIPF------SQ--QM-D-VGFFEFGSDRV-TDYATPNFSRGERLWCHP---GLRPLSGLQNTVASPIGAYRWEFTDRAL  226 (351)
T ss_dssp             CHHH------HH--HT-T-CCCEEECCC---CCCCCCSSCHHHHHHCST---TEEEGGGCSCCSSCSCSEECHHHHHHHH
T ss_pred             cCch------hh--hc-c-ccccccccccc-ccccCCccchhhhhcccc---ccCcccccccccCCCcccCchHHHHhhh
Confidence            5320      00  00 0 01111111111 111111112222222211   1222221111 01110     00000 0


Q ss_pred             ceeecc--CCCCCcccCCCcEEEEeCCCC-CCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccC
Q 018395          188 MAFNCE--EAPLDVDIKNGGRVVLLNTKN-LPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPD  264 (356)
Q Consensus       188 ~~~~l~--~~~~~~~~~~gG~~~~~~~~~-~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~  264 (356)
                      ......  ...+......++.+..+++.+ .+.+.+  |++....|.||....||+|+  +.++.||++|++++.|   +
T Consensus       227 ~~~~~~~~~~~~~~~~~g~~~l~yvnp~tg~~~~~t--~~~~~~~l~pG~~~~~hrh~--~~~v~~vi~G~g~~~i---~  299 (351)
T d2phda1         227 TEQLLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPT--LRCEFHRLRAGTETATRNEV--GSTVFQVFEGAGAVVM---N  299 (351)
T ss_dssp             HHHHHHHHTTCSCSSBTTEEEEEEBCTTTSSBSBTT--BEEEEEEECTTCBCCCEEES--SCEEEEEEESCEEEEE---T
T ss_pred             hhhhhcccccccccccCcceeEEEeccccCCCcCCc--ceEEEEEecCCCcCCCcccc--CcEEEEEEeCcEEEEE---C
Confidence            000000  111111123456677776554 677877  55778889999999999996  5699999999999987   3


Q ss_pred             CceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          265 GKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       265 g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      |++   .++++||||+||.++.|...| ++++.++.+.
T Consensus       300 ~~~---~~~~~gDvf~vP~~~~h~~~n-~~~~~Lf~~~  333 (351)
T d2phda1         300 GET---TKLEKGDMFVVPSWVPWSLQA-ETQFDLFRFS  333 (351)
T ss_dssp             TEE---EEECTTCEEEECTTCCEEEEE-SSCEEEEEEE
T ss_pred             CEE---EEEcCCCEEEeCCCCcEEEec-CCCeEEEEEC
Confidence            333   579999999999999999976 3456666654

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=99.81  E-value=1.5e-19  Score=172.22  Aligned_cols=237  Identities=16%  Similarity=0.117  Sum_probs=156.4

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec-CCCcEEEEEE
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK-EDTELVVLFL  113 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~-g~e~l~~l~i  113 (356)
                      ..+.++...|.||....+|+|++.++.||++|+|..++++  + + ...+++||++++|+|..|...|. +++++.++.+
T Consensus        83 ~~l~~~~q~l~PGe~~~~HrH~~~~~~~vi~G~g~~t~v~--g-e-~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~~l~~  158 (355)
T d3bu7a1          83 GWLFSGIQTMKAGERAGAHRHAASALRFIMEGSGAYTIVD--G-H-KVELGANDFVLTPNGTWHEHGILESGTECIWQDG  158 (355)
T ss_dssp             TTBEEEEEEECTTCBCCCEEESSCEEEEEEECSCEEEEET--T-E-EEEECTTCEEEECTTCCEEEEECTTCCCEEEEEE
T ss_pred             chhhhheEeeCCCCcCcccccccceeEEEEECCcEEEEEC--C-E-EEEeeCCCEEEeCCCceEeeecCCCCCcEEEEEe
Confidence            4688899999999999999999999999999999887764  3 2 37999999999999999999996 5667777655


Q ss_pred             eeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCc-CCCCC-----cccCCC
Q 018395          114 GDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAK-LPEPK-----KEHRDG  187 (356)
Q Consensus       114 ~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~-~~~p~-----~~~~~~  187 (356)
                      .+.     |  +.. +|.  .+++...+.++....+..+....+.....     +........ ...|.     +..+. 
T Consensus       159 ~D~-----P--l~~-~l~--~~f~e~~p~~~~~~~~~~~~s~~~~~~~~-----~~p~~~~~~~~~sp~~~ypw~~~~~-  222 (355)
T d3bu7a1         159 LDI-----P--LTN-CLE--ANFYEVHPNDYQTTDIPLNDSPLTYGGPA-----LLPQLDKWDKPYSPLLKYSWEPTYE-  222 (355)
T ss_dssp             ECH-----H--HHH-HTT--CCCEEECTTSSCCCCCCTTHHHHHHCSTT-----EEESSCCCCCSSCSCCEECHHHHHH-
T ss_pred             cch-----H--HHh-hcc--ceecccCchhcccccCCCccchhhhcccc-----cccccccCCcccCcccccccccchH-
Confidence            432     2  111 111  24455566666555555554443332111     111111000 00110     00000 


Q ss_pred             ceeeccCCCCCcccCCCcEEEEeCCCCC-CCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCc
Q 018395          188 MAFNCEEAPLDVDIKNGGRVVLLNTKNL-PLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK  266 (356)
Q Consensus       188 ~~~~l~~~~~~~~~~~gG~~~~~~~~~~-p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~  266 (356)
                      ....+....+ -....++.+..+++.+. +++.+  |++....|.||....||+|+.  .++.||++|++++.|   +|+
T Consensus       223 al~~~~~~~~-~~~~~g~~l~y~nP~tg~~~~~t--i~~~~~~l~pG~~~~~hrH~~--~~v~~v~~G~g~~~i---~g~  294 (355)
T d3bu7a1         223 ALLNYAKASD-GSPYDGLILRYTNPQTGGHPMLT--MGASMQMLRPGEHTKAHRHTG--NVIYNVAKGQGYSIV---GGK  294 (355)
T ss_dssp             HHHHHHTTCC-CBTTTBEEEEECCTTTSSCSSSS--CEEEEEEECTTCBCCCEEESS--CEEEEEEECCEEEEE---TTE
T ss_pred             HHHHHHhcCC-CCCCCceEEEeccccccCCCcce--eeEEEEEECCCCccCCcCccC--cEEEEEEECcEEEEE---CCE
Confidence            0111111111 12355778888776554 67776  668888999999999999974  589999999999988   333


Q ss_pred             eEEEEEecCCcEEEEcCCcEEEE-eeCCC-CeEEEEEE
Q 018395          267 RVLETTVKAGNLFIVPRFYVVSK-IADPD-GLAWFSII  302 (356)
Q Consensus       267 ~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~-~~~~~~~~  302 (356)
                      +   .++++||+|+||.+..|.. |.+++ .+.++.+.
T Consensus       295 ~---~~~~~GDv~~vP~~~~h~~~N~s~~e~~~Lf~~~  329 (355)
T d3bu7a1         295 R---FDWSEHDIFCVPAWTWHEHCNTQERDDACLFSFN  329 (355)
T ss_dssp             E---EEECTTCEEEECTTCCEEEEECCSSCCEEEEEEE
T ss_pred             E---EEeeCCCEEEeCCCCcEEeecCCCCCcEEEEEec
Confidence            3   5799999999999999998 44554 45555553

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.81  E-value=1.4e-18  Score=158.16  Aligned_cols=198  Identities=13%  Similarity=0.125  Sum_probs=133.3

Q ss_pred             CCcccCceEEEEEEecCCCcccCe-ee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCc
Q 018395           30 PMLRQGNIGAAKLALEKNGFALPH-YC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTE  107 (356)
Q Consensus        30 p~l~~~~~~~~~~~l~Pg~~~~pH-~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~  107 (356)
                      |.+ +..+.+..++|+||+-...+ +| ..+|++||++|++++.+   ++  +.+.|++||.+++|+|..|.+.|.++++
T Consensus        42 p~~-Ga~f~~~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~~~---~~--~~~~l~~Gd~~~~p~~~~H~~~N~~~~~  115 (250)
T d1sefa_          42 PKL-GATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD---GQ--ETHELEAGGYAYFTPEMKMYLANAQEAD  115 (250)
T ss_dssp             GGG-TCSSEEEEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEEC---SS--CEEEEETTEEEEECTTSCCEEEESSSSC
T ss_pred             ccc-CCcEEEEEEEEcCCcccCCCCCCCCcEEEEEEEeeEEEEEE---CC--EEEEEcCCCEEEEcCCCcEEEEECCCCC
Confidence            444 35688899999999977544 44 67889999999999986   23  3489999999999999999999999999


Q ss_pred             EEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCC
Q 018395          108 LVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDG  187 (356)
Q Consensus       108 l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~  187 (356)
                      ++++.+-..-  ..+.        +       ..                      .. .+...... .  .|.      
T Consensus       116 ~~~l~v~~~y--~~~~--------~-------~~----------------------p~-~~~~~~~~-~--e~~------  146 (250)
T d1sefa_         116 TEVFLYKKRY--QPLA--------G-------HQ----------------------PY-KVVGSIHD-Q--QPE------  146 (250)
T ss_dssp             EEEEEEEEEC--CCCT--------T-------CC----------------------CC-CEEEEGGG-S--CCE------
T ss_pred             EEEEEEEEec--cccc--------c-------cc----------------------cc-cccccccc-c--ccc------
Confidence            9999874421  1000        0       00                      00 00000000 0  000      


Q ss_pred             ceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCce
Q 018395          188 MAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKR  267 (356)
Q Consensus       188 ~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~  267 (356)
                         ...       ...+.+.....    |.-...++.+..+.+.||+..+.|+|.. ..|++||++|++++.+   +| +
T Consensus       147 ---~~~-------~~~~~~~~~~~----p~~~~~~~~~~~~~~~PG~~~~~~h~h~-~ee~~~vl~G~~~~~~---~~-~  207 (250)
T d1sefa_         147 ---EYE-------GMTDVLLWSLL----PKEFDFDMNMHILSFEPGASHAYIETHV-QEHGAYLISGQGMYNL---DN-E  207 (250)
T ss_dssp             ---EGG-------GCTTEEEEECS----CSSTTCSEEEEEEEECTTCBCSSCBCCS-CCEEEEEEECEEEEEE---TT-E
T ss_pred             ---ccC-------CccccceEEec----CccccccEEEEEEEECCCCccCccCccC-ceEEEEEeCCEEEEEE---CC-E
Confidence               000       01122222222    2222235788899999999997555545 7899999999999887   33 3


Q ss_pred             EEEEEecCCcEEEEcCCcEEEE-eeC-CCCeEEEEEEc
Q 018395          268 VLETTVKAGNLFIVPRFYVVSK-IAD-PDGLAWFSIIT  303 (356)
Q Consensus       268 ~~~~~l~~Gdv~vvP~g~~h~~-~~~-~~~~~~~~~~~  303 (356)
                        ...+++||++++|++.+|+. +.| ++.+.++.+.+
T Consensus       208 --~~~~~~GD~i~~~~~~pH~~~n~G~~~~~~~l~~k~  243 (250)
T d1sefa_         208 --WYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVYSKD  243 (250)
T ss_dssp             --EEEEETTCEEEECTTCCEEEEEECSSSCEEEEEEEE
T ss_pred             --EEEecCCCEEEECCCCCEEeEcCCCCCcEEEEEEec
Confidence              35799999999999999999 567 46788876543

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.81  E-value=3.1e-18  Score=157.51  Aligned_cols=204  Identities=12%  Similarity=0.152  Sum_probs=137.6

Q ss_pred             CCccc-CceEEEEEEecCCCcc-cCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395           30 PMLRQ-GNIGAAKLALEKNGFA-LPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT  106 (356)
Q Consensus        30 p~l~~-~~~~~~~~~l~Pg~~~-~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e  106 (356)
                      |.+.. ..++...++++||+-. .||.+ .++|++||++|++++.+   ++  +.+.|++||.+++|+|..|.+.|.+++
T Consensus        58 p~~G~a~~F~~y~vev~PGg~s~~p~~~~~~Ee~~yVl~G~~~l~~---~g--~~~~L~~Gd~~y~P~g~~h~~~N~g~~  132 (273)
T d1sq4a_          58 PLSGFAETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL---QG--QVHAMQPGGYAFIPPGADYKVRNTTGQ  132 (273)
T ss_dssp             CSSSSCCSCEEEEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE---SS--CEEEECTTEEEEECTTCCEEEECCSSS
T ss_pred             cccCCCcceEEEEEEECCCCccCCCCCCCCcEEEEEEEeCEEEEEE---CC--EEEEecCCCEEEECCCCcEeeeecCCC
Confidence            44432 4689999999999854 56666 78999999999999986   33  348999999999999999999999999


Q ss_pred             cEEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCC
Q 018395          107 ELVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRD  186 (356)
Q Consensus       107 ~l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~  186 (356)
                      +++++.+-...  . +       +.|       .+.                     ....+...+ . .  .|......
T Consensus       133 ~a~~l~i~k~y--~-~-------~~g-------~~~---------------------p~~~v~~~~-d-v--~p~~~~~~  170 (273)
T d1sq4a_         133 HTRFHWIRKHY--Q-K-------VDG-------VPL---------------------PEAFVTNEQ-D-I--QPLVMPDT  170 (273)
T ss_dssp             CEEEEEEEEEC--C-C-------CTT-------CCC---------------------CCCEEEEGG-G-S--CCEECSSG
T ss_pred             CEEEEEEEecc--c-c-------ccc-------ccc---------------------ccccccChh-c-c--CcccccCC
Confidence            99999875422  1 1       001       000                     001111111 0 0  01000000


Q ss_pred             CceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCee-cccccccCCeeEEEEEeceEEEEEEccCC
Q 018395          187 GMAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMC-SPGFSCDSALQVTYIVRGSGRAQIVGPDG  265 (356)
Q Consensus       187 ~~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~-~PH~h~~~A~ei~~v~~G~~~~~iv~~~g  265 (356)
                      +              ......+.+++.++.    -++.+..+.+.||+-. .+|+|..  .|++||++|++++.+   +|
T Consensus       171 ~--------------~~~~~~r~~~p~d~~----~d~~~~i~~~~PG~~~~~~h~H~~--ee~~~vl~G~~~~~~---~~  227 (273)
T d1sq4a_         171 E--------------GRWSTTRFVDMSDMR----HDMHVNIVNFEPGGVIPFAETHVM--EHGLYVLEGKAVYRL---NQ  227 (273)
T ss_dssp             G--------------GCEEEECSSCTTCTT----CSEEEEEEEECSSSEESCCCCCSE--EEEEEEEECEEEEEE---TT
T ss_pred             C--------------ceeEEEEeeCCcccc----cceEEEEEEEccCCcccccccccc--ceEEEEEccEEEEEE---CC
Confidence            0              000011112222211    1477889999999866 4899975  699999999999887   33


Q ss_pred             ceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEEEEcCCC
Q 018395          266 KRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFSIITTPN  306 (356)
Q Consensus       266 ~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~~~~~~~  306 (356)
                       +  ...+++||++++|++.+|++.| |+++++++.+.+-++
T Consensus       228 -~--~~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl~~kd~nR  266 (273)
T d1sq4a_         228 -D--WVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLYKDVNR  266 (273)
T ss_dssp             -E--EEEEETTCEEEEEESCCEEEECCSSSCEEEEEEEECSS
T ss_pred             -E--EEEecCCCEEEECCCCCEEeEeCCCCCEEEEEEEEcCc
Confidence             3  2579999999999999999954 789999998875444

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.8e-17  Score=150.82  Aligned_cols=196  Identities=13%  Similarity=0.122  Sum_probs=129.5

Q ss_pred             CCcccCceEEEEEEecCCCcccCeee--CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCc
Q 018395           30 PMLRQGNIGAAKLALEKNGFALPHYC--DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTE  107 (356)
Q Consensus        30 p~l~~~~~~~~~~~l~Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~  107 (356)
                      |.+. .++.+..++|+||+-...|+|  ..+|++||++|++++.+   ++  ..+.|++||++++|+|..|.+.|.++++
T Consensus        45 p~~g-~~f~~~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~~~---~~--~~~~l~~Gd~~~~p~~~~H~~~N~~~~~  118 (253)
T d1rc6a_          45 PKLG-ASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA---EG--KTFALSEGGYLYCPPGSLMTFVNAQAED  118 (253)
T ss_dssp             GGGT-CSSEEEEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE---TT--EEEEEETTEEEEECTTCCCEEEECSSSC
T ss_pred             cccC-CceEEEEEEECCCcccCCcccCCCcEEEEEEEECEEEEEE---CC--EEEEECCCCEEEECCCCCEEEEECCCCC
Confidence            4443 578889999999987766655  66789999999999986   33  3589999999999999999999999999


Q ss_pred             EEEEEEeeCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCC
Q 018395          108 LVVLFLGDTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDG  187 (356)
Q Consensus       108 l~~l~i~~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~  187 (356)
                      ++++.+....  .......               .+                       .+..-..+.. ..|       
T Consensus       119 ~~~l~v~~~~--~~~~~~~---------------~~-----------------------~~~~~~~d~~-~~~-------  150 (253)
T d1rc6a_         119 SQIFLYKRRY--VPVEGYA---------------PW-----------------------LVSGNASELE-RIH-------  150 (253)
T ss_dssp             EEEEEEEEEC--CCCTTCC---------------CC-----------------------CEEEEGGGSC-CC--------
T ss_pred             EEEEEEEecc--ccCCCcc---------------ce-----------------------eecccccccc-ccc-------
Confidence            9999875422  1110000               00                       0000000000 000       


Q ss_pred             ceeeccCCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeec-ccccccCCeeEEEEEeceEEEEEEccCCc
Q 018395          188 MAFNCEEAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCS-PGFSCDSALQVTYIVRGSGRAQIVGPDGK  266 (356)
Q Consensus       188 ~~~~l~~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~-PH~h~~~A~ei~~v~~G~~~~~iv~~~g~  266 (356)
                              .+   ...+.+.....+.    -...++.+..+.+.||+-.. +|+|.  ..|+.||++|++++.+   +|+
T Consensus       151 --------~~---~~~~~~~~~~~p~----~~~~~~~~~~~~~~PG~~~~~~h~h~--~ee~~~vl~G~g~~~i---~~~  210 (253)
T d1rc6a_         151 --------YE---GMDDVILLDFLPK----ELGFDMNMHILSFAPGASHGYIETHV--QEHGAYILSGQGVYNL---DNN  210 (253)
T ss_dssp             -----------------CEEEECSCC----STTCSEEEEEEEECTTCCBEEEEEES--SCEEEEEEESEEEEES---SSC
T ss_pred             --------cc---ccceeEEEEecCc----cccccEEEEEEEECCCceEeEEEeCC--ceEEEEEeCCEEEEEE---CCE
Confidence                    00   0112223333222    12235788999999998775 77775  5799999999999887   333


Q ss_pred             eEEEEEecCCcEEEEcCCcEEEE-eeCCC-CeEEEEEE
Q 018395          267 RVLETTVKAGNLFIVPRFYVVSK-IADPD-GLAWFSII  302 (356)
Q Consensus       267 ~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~-~~~~~~~~  302 (356)
                      .   .++++||++++|+|.+|+. +.|.+ .+.++...
T Consensus       211 ~---~~~~~GD~i~~~~~~ph~~~~~g~~~~~~~~~~~  245 (253)
T d1rc6a_         211 W---IPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSK  245 (253)
T ss_dssp             E---EEEETTCEEEECSSEEEEEEEC----CEEEEEEE
T ss_pred             E---EEecCCCEEEECCCCCEeeeeCCCCCcEEEEEEE
Confidence            3   5799999999999999999 55754 45666554

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.73  E-value=1.6e-16  Score=143.79  Aligned_cols=191  Identities=11%  Similarity=0.043  Sum_probs=133.0

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      ..+++..++|.||+-  +|.|..++++||++|++++.+   ++  ..+.|++||.+++|+|..|.+.|.+++++.++-..
T Consensus        48 ~~F~~~~v~~~pGg~--~~~~~~E~~~~Vl~G~~~~~~---~g--~~~~l~~G~~~~~P~g~~h~~~n~~~~~~~~~~~~  120 (245)
T d1sfna_          48 ARFVQFTAEMPAGAQ--ATESVYQRFAFVLSGEVDVAV---GG--ETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKP  120 (245)
T ss_dssp             CSSEEEEEEECTTCE--EECCSSEEEEEEEEEEEEEEC---SS--CEEEECTTEEEEECTTCCCEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEEECCCCC--CCCCCccEEEEEEECEEEEEE---CC--EEEEecCCCEEEeCCCCcEEEEeCCCccEEEEEee
Confidence            468889999999985  455578999999999999975   23  34899999999999999999999998887776432


Q ss_pred             eCCCCCCCCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceeeccC
Q 018395          115 DTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCEE  194 (356)
Q Consensus       115 ~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~l~~  194 (356)
                      ...    .   +     +.                            ..+. .++. +....  .+         +.   
T Consensus       121 ~~~----~---~-----~~----------------------------~~P~-~~~~-~~~~~--~~---------~p---  144 (245)
T d1sfna_         121 YQT----V---E-----GV----------------------------QAPG-VYWG-NEREN--PG---------YP---  144 (245)
T ss_dssp             CCC----B---T-----TB----------------------------CCCC-CEEE-ETTTC--CC---------EE---
T ss_pred             ccc----c---c-----cc----------------------------CCCc-ceec-ccccc--cc---------cC---
Confidence            110    0   0     00                            0000 1111 10000  00         00   


Q ss_pred             CCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEec
Q 018395          195 APLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVK  274 (356)
Q Consensus       195 ~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~  274 (356)
                          .....+++.+...+.+.    .-.+.+..+.++||+-...|.|.. ..|++||++|++++.+   +| +  ...|+
T Consensus       145 ----~~~~~~~~~r~l~p~~~----~~~~~~~~~~~~PG~~~~~~~~h~-~ee~~~vl~G~~~~~i---~~-~--~~~v~  209 (245)
T d1sfna_         145 ----FEGDDHLIARKLLPDEP----AFDFMVSTMSFAPGASLPYAEVHY-MEHGLLMLEGEGLYKL---EE-N--YYPVT  209 (245)
T ss_dssp             ----TTSCTTEEEEECSCCCT----TCSEEEEEEEECTTCBCSSCBCCS-SCEEEEEEECEEEEEE---TT-E--EEEEE
T ss_pred             ----CccccceEEEecCCccc----ccceEEEEEEEccCceeeceecCC-ceEEEEEeCCEEEEEE---CC-E--EEEec
Confidence                00123455555554332    224778899999999988876445 7799999999999877   23 3  25799


Q ss_pred             CCcEEEEcCCcEEEE-eeCCCCeEEEEEEc
Q 018395          275 AGNLFIVPRFYVVSK-IADPDGLAWFSIIT  303 (356)
Q Consensus       275 ~Gdv~vvP~g~~h~~-~~~~~~~~~~~~~~  303 (356)
                      +||++++|++.+|++ +.|++++.++.+.+
T Consensus       210 ~GD~i~~~~~~~H~~~n~g~~~~~~l~~k~  239 (245)
T d1sfna_         210 AGDIIWMGAHCPQWYGALGRNWSKYLLYKD  239 (245)
T ss_dssp             TTCEEEECTTCCEEEEEESSSCEEEEEEEE
T ss_pred             CCCEEEECCCCCEeeEeCCCCCEEEEEEec
Confidence            999999999999999 55889999998754

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=2.4e-15  Score=120.23  Aligned_cols=109  Identities=20%  Similarity=0.127  Sum_probs=82.4

Q ss_pred             CcccCCCccccceee--CCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCC
Q 018395            1 MEIDLTPKLAKQVYG--GNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEK   77 (356)
Q Consensus         1 ~~~dl~~~~~~~~~~--~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~   77 (356)
                      |.++....+|+.+-.  ...|.+....-.+-..+.+....+..++++||+..++|+| ..+|++||++|++.+.+   ++
T Consensus         1 mivr~~~~~pe~~~~~~Gg~G~~~~~~l~~~~~~~~~~~~~~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~~---~~   77 (115)
T d1o4ta_           1 MVVRSSEITPERISNMRGGKGEVEMAHLLSKEAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NG   77 (115)
T ss_dssp             CEEEGGGSCCEEEESGGGCSSEEEEEECSCTTTTTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TT
T ss_pred             CeEEcccCCeeeecccCCCccEEEEEEecCccccCCccEEEEEEEECCCCCcCCEECCCCcEEEEEEECcceEEE---cC
Confidence            555555556654433  2334443321112234555667788999999999999999 67899999999999876   33


Q ss_pred             ceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           78 EEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        78 ~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                        +.+.+++||++++|+|..|++.|.|++++++++|.
T Consensus        78 --~~~~l~~Gd~~~ip~g~~H~~~N~g~~~~~~l~I~  112 (115)
T d1o4ta_          78 --KDVPIKAGDVCFTDSGESHSIENTGNTDLEFLAVI  112 (115)
T ss_dssp             --EEEEEETTEEEEECTTCEEEEECCSSSCEEEEEEE
T ss_pred             --eeEEeeccEEEEECCCCeEEEEECCCCCEEEEEEE
Confidence              34899999999999999999999999999999985

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.54  E-value=2.7e-14  Score=112.85  Aligned_cols=79  Identities=18%  Similarity=0.250  Sum_probs=70.4

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      .++.+..++++||...++|+|+.++++||++|++.+.+   ++++ .+++++||++++|+|.+|++.|.++++++++++.
T Consensus        24 ~~~~v~~~~l~pG~~~p~H~H~~~e~~~Vl~G~~~~~v---~~~e-~~~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v~   99 (108)
T d2b8ma1          24 EHVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL---EDQE-PHNYKEGNIVYVPFNVKMLIQNINSDILEFFVVK   99 (108)
T ss_dssp             SSCEEEEEEEETTCBCCCEECSSCEEEEEEESEEEEEE---TTSC-CEEEETTCEEEECTTCEEEEECCSSSEEEEEEEE
T ss_pred             CCEEEEEEEECCCCcChhhcccccEEEEEEeeeEEEEE---eccc-EEEeecceEeeccCCceEEEEcCCCCcEEEEEEE
Confidence            46789999999999999999998999999999999987   3332 3789999999999999999999999999999987


Q ss_pred             eCC
Q 018395          115 DTS  117 (356)
Q Consensus       115 ~~~  117 (356)
                      .+.
T Consensus       100 ~P~  102 (108)
T d2b8ma1         100 APH  102 (108)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            643

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=1.6e-13  Score=107.14  Aligned_cols=79  Identities=18%  Similarity=0.160  Sum_probs=70.2

Q ss_pred             ccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           33 RQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      .+.++.+..++++||+...+|+| ..+|++||++|++.+.+   ++  +...+++||++++|+|..|++.|.|+++++++
T Consensus        24 ~~~~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~---~~--~~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l   98 (105)
T d1v70a_          24 QSERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GE--EEALLAPGMAAFAPAGAPHGVRNESASPALLL   98 (105)
T ss_dssp             EETTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TT--EEEEECTTCEEEECTTSCEEEECCSSSCEEEE
T ss_pred             ECCCEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEE---ee--eEEEecceEEEEeCCCCEEEeEECCCCCEEEE
Confidence            34568889999999999999999 77899999999999986   33  34899999999999999999999999999999


Q ss_pred             EEeeC
Q 018395          112 FLGDT  116 (356)
Q Consensus       112 ~i~~~  116 (356)
                      .+..+
T Consensus        99 ~v~~P  103 (105)
T d1v70a_          99 VVTAP  103 (105)
T ss_dssp             EEEES
T ss_pred             EEECC
Confidence            88764

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.44  E-value=3.2e-13  Score=114.01  Aligned_cols=83  Identities=13%  Similarity=0.149  Sum_probs=71.9

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCC----CceEEEEEcCCCEEEeCCCcEEEEEecCC-CcEE
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPE----KEEKVVAIKKGDGIALPFGVVTWWYNKED-TELV  109 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~----~~~~~~~l~~GDv~~iP~G~~H~~~N~g~-e~l~  109 (356)
                      ..+.+.+.+|.||+...+|+|+.+|++||++|++.+.+-+..    ++.+.+.|++||++++|+|.+|++.|+|+ |+++
T Consensus        39 ~~i~v~~~~l~PG~~~~~H~H~~~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd~~~iP~~~~H~~~N~g~~E~l~  118 (160)
T d1lr5a_          39 KEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQ  118 (160)
T ss_dssp             SSEEEEEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEE
T ss_pred             cEEEEEEEEECCCccccceeccccEEEEEEeeeEEEEECCccccccccceEEEecCCCEEEeCCCCcEEEEECCCCCCEE
Confidence            468999999999999999999999999999999999875422    12356899999999999999999999986 7999


Q ss_pred             EEEEeeCC
Q 018395          110 VLFLGDTS  117 (356)
Q Consensus       110 ~l~i~~~~  117 (356)
                      ++++....
T Consensus       119 ~l~i~~~~  126 (160)
T d1lr5a_         119 VLVIISRP  126 (160)
T ss_dssp             EEEEEESS
T ss_pred             EEEEECCC
Confidence            99887643

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=1.3e-13  Score=109.77  Aligned_cols=77  Identities=19%  Similarity=0.143  Sum_probs=69.4

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      .++.+..++|+||+...+|+|..+|++||++|++.+.+   ++  +.+.+++||++++|+|..|++.|.+++++++||++
T Consensus        34 ~~~~~~~~~i~pG~~~~~H~H~~~e~~~vl~G~~~~~~---~~--~~~~l~~Gd~~~ip~~~~H~~~n~~~~~~~~l~ii  108 (114)
T d1vj2a_          34 PNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK---EQ--GEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLI  108 (114)
T ss_dssp             SSEEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEEEC---SS--CEEEEETTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             CceEEEEEEECCCCCCCceECCCcEEEEEEEceeEEEE---ee--eeeEEecCeEEEEcCCCeEEEEeCCCCCEEEEEEE
Confidence            46888999999999999999988999999999999975   33  34899999999999999999999999999999997


Q ss_pred             eC
Q 018395          115 DT  116 (356)
Q Consensus       115 ~~  116 (356)
                      .+
T Consensus       109 p~  110 (114)
T d1vj2a_         109 PK  110 (114)
T ss_dssp             EG
T ss_pred             CC
Confidence            53

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.41  E-value=3.6e-13  Score=104.48  Aligned_cols=79  Identities=11%  Similarity=0.102  Sum_probs=66.8

Q ss_pred             CCcccCceEEEEEEecCCCcc--cCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCc
Q 018395           30 PMLRQGNIGAAKLALEKNGFA--LPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTE  107 (356)
Q Consensus        30 p~l~~~~~~~~~~~l~Pg~~~--~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~  107 (356)
                      |.....++.+..++|+||+..  .+|+|.++|++||++|++.+.+   ++  +.+.|++||++++|++.+|++.|.++++
T Consensus        15 p~~~~~~~e~~~~~l~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~---~~--~~~~l~~GD~~~~~~~~~H~~~n~~~~~   89 (99)
T d1y9qa2          15 PYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF---DE--QWHELQQGEHIRFFSDQPHGYAAVTEKA   89 (99)
T ss_dssp             EEETTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEEEE---TT--EEEEECTTCEEEEECSSSEEEEESSSCE
T ss_pred             cCCCcCCEEEEEEEEeCCcEeccccccCCcEEEEEEEcCceEEEe---cc--eEEEecCCCEEEECCCCeEEEEeCCccC
Confidence            444556899999999999866  6677788999999999999987   33  4589999999999999999999999998


Q ss_pred             EEEEEE
Q 018395          108 LVVLFL  113 (356)
Q Consensus       108 l~~l~i  113 (356)
                      +.++.|
T Consensus        90 ~~~~vi   95 (99)
T d1y9qa2          90 VFQNIV   95 (99)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            755544

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.31  E-value=1.1e-11  Score=107.15  Aligned_cols=85  Identities=21%  Similarity=0.271  Sum_probs=73.3

Q ss_pred             ccCceEEEEEEecCCCcc------cCeee---CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec
Q 018395           33 RQGNIGAAKLALEKNGFA------LPHYC---DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK  103 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~------~pH~h---~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~  103 (356)
                      ...++.+....+.||...      ..|||   +.+|++||++|++.+.+-+.++..+...+++||+++||+|+.|.+.|+
T Consensus        63 ~~~~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N~  142 (190)
T d1x82a_          63 KEGDLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNI  142 (190)
T ss_dssp             CTTCEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEEC
T ss_pred             CCCCeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEeEEC
Confidence            345789999999999744      35887   467999999999999988776666678999999999999999999999


Q ss_pred             CCCcEEEEEEeeCC
Q 018395          104 EDTELVVLFLGDTS  117 (356)
Q Consensus       104 g~e~l~~l~i~~~~  117 (356)
                      |+++|++++++...
T Consensus       143 Gde~L~~l~v~~~~  156 (190)
T d1x82a_         143 GDEPFIFLAIYPAD  156 (190)
T ss_dssp             SSSCEEEEEEEETT
T ss_pred             CCCCEEEEEEECCC
Confidence            99999999988643

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=99.31  E-value=7.1e-12  Score=102.31  Aligned_cols=78  Identities=23%  Similarity=0.270  Sum_probs=69.3

Q ss_pred             cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      ..++.+..++++||+...+|+|..++++||++|++++++   ++.+ ...+++||++++|+|..||..|.+++++..|++
T Consensus        32 ~~~~~~~~vtf~PG~~~~~H~H~~~q~~~Vl~G~~~~~~---~g~~-~~~~~~Gd~v~ippg~~H~~~a~~~~~~~~lai  107 (134)
T d2f4pa1          32 VFNTQVYDVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---RGKP-ARILKKGDVVEIPPNVVHWHGAAPDEELVHIGI  107 (134)
T ss_dssp             SSSCEEEEEEECTTCEECSEECTTCEEEEEEEEEEEEEE---TTSC-CEEEETTCEEEECTTCCEEEEEBTTBCEEEEEE
T ss_pred             CceeEEEEEEECCCCcCccccCCCCEEEEEEeCEEEEEE---CCcc-eEEEcCCCeEEECCCCceECccCCCCcEEEEEE
Confidence            457889999999999999999988999999999999876   2222 379999999999999999999999999999998


Q ss_pred             ee
Q 018395          114 GD  115 (356)
Q Consensus       114 ~~  115 (356)
                      ..
T Consensus       108 ~~  109 (134)
T d2f4pa1         108 ST  109 (134)
T ss_dssp             EC
T ss_pred             Ee
Confidence            65

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.26  E-value=2.7e-11  Score=96.19  Aligned_cols=74  Identities=18%  Similarity=0.182  Sum_probs=63.6

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~~~~~~~~  300 (356)
                      ...++.+.+.||+-.++|+|++ ..|+.||++|++++.+-   |+   ...+++||++++|+|.+|+. |.|++++++++
T Consensus        38 ~~~~~~~~~~PG~~~~~H~H~~-~~E~~~vl~G~~~~~~~---~~---~~~l~~Gd~~~ip~g~~H~~~N~g~~~~~~l~  110 (115)
T d1o4ta_          38 ARLFARMKLPPGSSVGLHKHEG-EFEIYYILLGEGVFHDN---GK---DVPIKAGDVCFTDSGESHSIENTGNTDLEFLA  110 (115)
T ss_dssp             EEEEEEEEECTTCEEEEEECCS-EEEEEEEEESEEEEEET---TE---EEEEETTEEEEECTTCEEEEECCSSSCEEEEE
T ss_pred             cEEEEEEEECCCCCcCCEECCC-CcEEEEEEECcceEEEc---Ce---eEEeeccEEEEECCCCeEEEEECCCCCEEEEE
Confidence            3557788999999999999998 89999999999988753   22   25799999999999999999 56888999998


Q ss_pred             EE
Q 018395          301 II  302 (356)
Q Consensus       301 ~~  302 (356)
                      +.
T Consensus       111 I~  112 (115)
T d1o4ta_         111 VI  112 (115)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.24  E-value=5.2e-11  Score=106.97  Aligned_cols=92  Identities=12%  Similarity=0.070  Sum_probs=76.2

Q ss_pred             CCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCee-eCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCC
Q 018395           16 GNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHY-CDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF   94 (356)
Q Consensus        16 ~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~-h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~   94 (356)
                      .+++..+..++.    -....+.+..++++||+....|+ |..+|++||++|++.+.+   ++  +.+.+++||++++|+
T Consensus       148 ~~~~~~r~l~p~----~~~~~~~~~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i---~~--~~~~v~~GD~i~~~~  218 (245)
T d1sfna_         148 DDHLIARKLLPD----EPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EE--NYYPVTAGDIIWMGA  218 (245)
T ss_dssp             CTTEEEEECSCC----CTTCSEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TT--EEEEEETTCEEEECT
T ss_pred             ccceEEEecCCc----ccccceEEEEEEEccCceeeceecCCceEEEEEeCCEEEEEE---CC--EEEEecCCCEEEECC
Confidence            456666655543    23457889999999999998876 599999999999999987   33  348999999999999


Q ss_pred             CcEEEEEecCCCcEEEEEEeeC
Q 018395           95 GVVTWWYNKEDTELVVLFLGDT  116 (356)
Q Consensus        95 G~~H~~~N~g~e~l~~l~i~~~  116 (356)
                      +.+|++.|.|++++++|+.-+-
T Consensus       219 ~~~H~~~n~g~~~~~~l~~k~~  240 (245)
T d1sfna_         219 HCPQWYGALGRNWSKYLLYKDM  240 (245)
T ss_dssp             TCCEEEEEESSSCEEEEEEEEC
T ss_pred             CCCEeeEeCCCCCEEEEEEecC
Confidence            9999999999999999986653

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=99.17  E-value=3.8e-10  Score=90.43  Aligned_cols=82  Identities=10%  Similarity=-0.004  Sum_probs=66.6

Q ss_pred             cccCceEEEEEEecCCCcccC---eeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec-CCCc
Q 018395           32 LRQGNIGAAKLALEKNGFALP---HYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK-EDTE  107 (356)
Q Consensus        32 l~~~~~~~~~~~l~Pg~~~~p---H~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~-g~e~  107 (356)
                      .....+-..++++.|+.....   |.|..+|++|||+|++.+.+-+..+ .+.+.|++||++++|++.+|.+.|. |+++
T Consensus        36 ~~~~~~~~~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~-~~~~~l~~GDsi~~~~~~pH~~~n~~g~~~  114 (122)
T d2bnma2          36 KRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKEN-PKEALLPTGASMFVEEHVPHAFTAAKGTGS  114 (122)
T ss_dssp             TTSTTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTS-CEEEEECTTCEEEECTTCCEEEEESTTSCC
T ss_pred             cCCCccEeEEEEEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccC-CEEEEEccCcEEEeCCCCCEEEEcCCCCcc
Confidence            344678889999999987643   2358899999999999998743322 2458999999999999999999995 7888


Q ss_pred             EEEEEEe
Q 018395          108 LVVLFLG  114 (356)
Q Consensus       108 l~~l~i~  114 (356)
                      +++++|.
T Consensus       115 a~~l~Vt  121 (122)
T d2bnma2         115 AKLIAVN  121 (122)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9988864

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.15  E-value=7.3e-11  Score=93.15  Aligned_cols=76  Identities=18%  Similarity=0.316  Sum_probs=64.4

Q ss_pred             ccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           33 RQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      +..++.+..+.++||....+|+|..++++||++|++.+.+   ++  ..+.+++||++++|+|..|.+.|.++  +++++
T Consensus        33 ~~~~~~i~~~~~~~G~~~~~H~h~~~~~~~vl~G~~~~~~---~~--~~~~l~~Gd~~~ip~~~~H~~~a~~~--~~~l~  105 (112)
T d1yhfa1          33 QRQDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQ--ETYRVAEGQTIVMPAGIPHALYAVEA--FQMLL  105 (112)
T ss_dssp             EETTEEEEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TT--EEEEEETTCEEEECTTSCEEEEESSC--EEEEE
T ss_pred             ECCCcEEEEEEECCCCCcceEECCCCEEEEEEeCEEEEEE---cc--EEEEecCCEEEEcCCCCeEEeEECCC--cEEEE
Confidence            3456788899999999999999987999999999999987   33  34899999999999999999999764  55655


Q ss_pred             Eee
Q 018395          113 LGD  115 (356)
Q Consensus       113 i~~  115 (356)
                      +..
T Consensus       106 ~vi  108 (112)
T d1yhfa1         106 VVV  108 (112)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.14  E-value=1e-10  Score=98.29  Aligned_cols=100  Identities=15%  Similarity=0.077  Sum_probs=76.7

Q ss_pred             CCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCc---eEEEEEecCCcE
Q 018395          202 KNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK---RVLETTVKAGNL  278 (356)
Q Consensus       202 ~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~---~~~~~~l~~Gdv  278 (356)
                      ..|.....+.......++.  |++.+..|.||+-..+|+|.  +.|+.||++|++.+.+-+...+   +.-...|++||+
T Consensus        22 ~~g~~~~~~~~~~~~g~~~--i~v~~~~l~PG~~~~~H~H~--~~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd~   97 (160)
T d1lr5a_          22 IEGLSHITVAGALNHGMKE--VEVWLQTISPGQRTPIHRHS--CEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTT   97 (160)
T ss_dssp             CTTEEEEEEECHHHHCCSS--EEEEEEEECTTCBCCEEEES--SCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEE
T ss_pred             CCCceEEEeecccCCCccE--EEEEEEEECCCccccceecc--ccEEEEEEeeeEEEEECCccccccccceEEEecCCCE
Confidence            4455555554444555554  77999999999999999994  6899999999999998774321   112458999999


Q ss_pred             EEEcCCcEEEEe-eCC-CCeEEEEEEcCC
Q 018395          279 FIVPRFYVVSKI-ADP-DGLAWFSIITTP  305 (356)
Q Consensus       279 ~vvP~g~~h~~~-~~~-~~~~~~~~~~~~  305 (356)
                      ++||+|.+|... .|+ |+++++.+.+..
T Consensus        98 ~~iP~~~~H~~~N~g~~E~l~~l~i~~~~  126 (160)
T d1lr5a_          98 FSIPVNDPHQVWNSDEHEDLQVLVIISRP  126 (160)
T ss_dssp             EEECTTCCEEEECCCSSSCEEEEEEEESS
T ss_pred             EEeCCCCcEEEEECCCCCCEEEEEEECCC
Confidence            999999999995 464 789999887543

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.13  E-value=8e-11  Score=107.30  Aligned_cols=78  Identities=18%  Similarity=0.189  Sum_probs=69.2

Q ss_pred             cCceEEEEEEecCCCccc-CeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFAL-PHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~-pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      ..++.+..++++||+... +|+|..+|++|||+|++++.+   ++  +.+.+++||++++|++.+|+++|.|++++++|+
T Consensus       186 ~~d~~~~i~~~~PG~~~~~~h~H~~ee~~~vl~G~~~~~~---~~--~~~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl~  260 (273)
T d1sq4a_         186 RHDMHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL---NQ--DWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLL  260 (273)
T ss_dssp             TCSEEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE---TT--EEEEEETTCEEEEEESCCEEEECCSSSCEEEEE
T ss_pred             ccceEEEEEEEccCCccccccccccceEEEEEccEEEEEE---CC--EEEEecCCCEEEECCCCCEEeEeCCCCCEEEEE
Confidence            357899999999998665 799988999999999999987   33  348999999999999999999999999999998


Q ss_pred             EeeC
Q 018395          113 LGDT  116 (356)
Q Consensus       113 i~~~  116 (356)
                      +.+-
T Consensus       261 ~kd~  264 (273)
T d1sq4a_         261 YKDV  264 (273)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8764

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=2.3e-10  Score=88.66  Aligned_cols=75  Identities=12%  Similarity=-0.008  Sum_probs=65.4

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEe-eCCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI-ADPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~-~~~~~~~~~~  300 (356)
                      ++.+..+.+.||+-..+|+|+. ..|+.||++|++.+.+-   + +  ...|++||++++|+|.+|... .|++++.++.
T Consensus        27 ~~~~~~~~~~PG~~~~~H~H~~-~~e~~~vl~G~~~~~~~---~-~--~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~   99 (105)
T d1v70a_          27 RMLYDLYALLPGQAQKVHVHEG-SDKVYYALEGEVVVRVG---E-E--EALLAPGMAAFAPAGAPHGVRNESASPALLLV   99 (105)
T ss_dssp             TEEEEEEEECTTCEEEEECCSS-CEEEEEEEESCEEEEET---T-E--EEEECTTCEEEECTTSCEEEECCSSSCEEEEE
T ss_pred             CEEEEEEEECCCCCCcceECCC-CeEEEEEEeeEEEEEEe---e-e--EEEecceEEEEeCCCCEEEeEECCCCCEEEEE
Confidence            5778899999999999999998 89999999999998862   2 2  357999999999999999994 5788999998


Q ss_pred             EEc
Q 018395          301 IIT  303 (356)
Q Consensus       301 ~~~  303 (356)
                      +.+
T Consensus       100 v~~  102 (105)
T d1v70a_         100 VTA  102 (105)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            874

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.11  E-value=3.2e-10  Score=102.00  Aligned_cols=78  Identities=18%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             ccCceEEEEEEecCCCcccC-eeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecC-CCcEEE
Q 018395           33 RQGNIGAAKLALEKNGFALP-HYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKE-DTELVV  110 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~~p-H~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g-~e~l~~  110 (356)
                      ...++.+..++++||+.... |+|..+|++||++|++.+.+   ++  +.+.+++||++++|++.+|+..|.| ++++++
T Consensus       164 ~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~~---~~--~~~~~~~GD~i~~~~~~pH~~~n~G~~~~~~~  238 (250)
T d1sefa_         164 FDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DN--EWYPVEKGDYIFMSAYVPQAAYAVGREEPLMY  238 (250)
T ss_dssp             TTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TT--EEEEEETTCEEEECTTCCEEEEEECSSSCEEE
T ss_pred             ccccEEEEEEEECCCCccCccCccCceEEEEEeCCEEEEEE---CC--EEEEecCCCEEEECCCCCEEeEcCCCCCcEEE
Confidence            44678999999999999875 55599999999999999987   33  3489999999999999999999999 567888


Q ss_pred             EEEee
Q 018395          111 LFLGD  115 (356)
Q Consensus       111 l~i~~  115 (356)
                      +..-+
T Consensus       239 l~~k~  243 (250)
T d1sefa_         239 VYSKD  243 (250)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            76544

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.06  E-value=4.1e-10  Score=88.27  Aligned_cols=78  Identities=18%  Similarity=0.248  Sum_probs=65.9

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~  300 (356)
                      ++++.++.|.||.-..+|+|+  ..++.||++|++.+.+-+..  +   .+|++||++++|+|.+|...| +++++++++
T Consensus        25 ~~~v~~~~l~pG~~~p~H~H~--~~e~~~Vl~G~~~~~v~~~e--~---~~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~   97 (108)
T d2b8ma1          25 HVQINHIVLPRGEQMPKHYSN--SYVHLIIIKGEMTLTLEDQE--P---HNYKEGNIVYVPFNVKMLIQNINSDILEFFV   97 (108)
T ss_dssp             SCEEEEEEEETTCBCCCEECS--SCEEEEEEESEEEEEETTSC--C---EEEETTCEEEECTTCEEEEECCSSSEEEEEE
T ss_pred             CEEEEEEEECCCCcChhhccc--ccEEEEEEeeeEEEEEeccc--E---EEeecceEeeccCCceEEEEcCCCCcEEEEE
Confidence            578999999999999999995  57999999999999874422  1   369999999999999999955 788999999


Q ss_pred             EEcCCCC
Q 018395          301 IITTPNP  307 (356)
Q Consensus       301 ~~~~~~p  307 (356)
                      +. +..|
T Consensus        98 v~-~P~p  103 (108)
T d2b8ma1          98 VK-APHP  103 (108)
T ss_dssp             EE-CSCG
T ss_pred             EE-CCCC
Confidence            86 4444

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=6.1e-10  Score=100.27  Aligned_cols=78  Identities=18%  Similarity=0.183  Sum_probs=62.9

Q ss_pred             ccCceEEEEEEecCCCccc-CeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCC-cEEE
Q 018395           33 RQGNIGAAKLALEKNGFAL-PHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDT-ELVV  110 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~~-pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e-~l~~  110 (356)
                      ...++.+..++++||+... +|+|..+|++||++|++.+.+   ++  +.+++++||++++|+|.+|++.|.|.+ .+++
T Consensus       167 ~~~~~~~~~~~~~PG~~~~~~h~h~~ee~~~vl~G~g~~~i---~~--~~~~~~~GD~i~~~~~~ph~~~~~g~~~~~~~  241 (253)
T d1rc6a_         167 LGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNL---DN--NWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSY  241 (253)
T ss_dssp             TTCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEES---SS--CEEEEETTCEEEECSSEEEEEEEC----CEEE
T ss_pred             ccccEEEEEEEECCCceEeEEEeCCceEEEEEeCCEEEEEE---CC--EEEEecCCCEEEECCCCCEeeeeCCCCCcEEE
Confidence            3467899999999999776 677799999999999999976   33  348999999999999999999999865 4566


Q ss_pred             EEEee
Q 018395          111 LFLGD  115 (356)
Q Consensus       111 l~i~~  115 (356)
                      +..-+
T Consensus       242 ~~~~~  246 (253)
T d1rc6a_         242 IYSKD  246 (253)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            65443

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.98  E-value=3.5e-10  Score=106.56  Aligned_cols=88  Identities=18%  Similarity=0.248  Sum_probs=71.7

Q ss_pred             ceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           36 NIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      .+++..+++.|+++..|||| +++|++||++|++++.+.+   . ...+|++||+++||+|.+|.+.|.++. .+++++.
T Consensus       248 ~~~~~~~~~~pg~~~~~~~~~~~~e~~~vleG~~~~~i~~---~-~~~~l~~GD~~~vP~g~~h~~~~~~~~-~~~~~~~  322 (348)
T d1juha_         248 TLSTISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIGD---Y-AATELGSGDVAFIPGGVEFKYYSEAYF-SKVLFVS  322 (348)
T ss_dssp             EEEEEEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEETT---S-CCEEECTTCEEEECTTCCEEEEESSSS-EEEEEEE
T ss_pred             ceeEEEEEecCCCCCCCcccCCCCEEEEEEeceEEEEeCC---c-ceEEecCCCEEEECCCCcEEEEeCCCC-cEEEEEE
Confidence            56788899999999999999 9999999999999998732   2 237999999999999999999999887 5777665


Q ss_pred             eCCCCCCCCceeEEeeccc
Q 018395          115 DTSKGHKAGEFTNFFLTGA  133 (356)
Q Consensus       115 ~~~~~~~pg~~~~f~lag~  133 (356)
                      ..     |+-++.||++++
T Consensus       323 ~~-----~~g~~~~~~~~g  336 (348)
T d1juha_         323 SG-----SDGLDQNLVNGG  336 (348)
T ss_dssp             ES-----SSSHHHHHHHHS
T ss_pred             cC-----CCchHHHHHhcC
Confidence            43     222566676654

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.96  E-value=2.7e-09  Score=91.83  Aligned_cols=83  Identities=13%  Similarity=0.232  Sum_probs=67.2

Q ss_pred             CceeEEEEecCCCe------ecccccccC-CeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeCC
Q 018395          222 GCGADLVRLDGKAM------CSPGFSCDS-ALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IADP  293 (356)
Q Consensus       222 ~~s~~~v~l~~g~~------~~PH~h~~~-A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~~  293 (356)
                      ++.+....+.||.+      ...|||+.. ..|+.||++|++.+.+-+.++.. ....+++||+++||+|+.|.+ |.|+
T Consensus        66 ~l~~~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~-~~~~v~~Gd~v~iP~g~~H~~~N~Gd  144 (190)
T d1x82a_          66 DLNFATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDA-KWISMEPGTVVYVPPYWAHRTVNIGD  144 (190)
T ss_dssp             CEEEEEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCE-EEEEECTTCEEEECTTCEEEEEECSS
T ss_pred             CeEEEEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCce-EEEEecCCcEEEEecceeEEeEECCC
Confidence            36677788889864      346998740 46999999999999999887643 235799999999999999999 5689


Q ss_pred             CCeEEEEEEcCC
Q 018395          294 DGLAWFSIITTP  305 (356)
Q Consensus       294 ~~~~~~~~~~~~  305 (356)
                      +++.++++..++
T Consensus       145 e~L~~l~v~~~~  156 (190)
T d1x82a_         145 EPFIFLAIYPAD  156 (190)
T ss_dssp             SCEEEEEEEETT
T ss_pred             CCEEEEEEECCC
Confidence            999999987554

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=98.95  E-value=9.1e-10  Score=86.90  Aligned_cols=75  Identities=11%  Similarity=0.067  Sum_probs=63.6

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-CCCCeEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-DPDGLAWFS  300 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-~~~~~~~~~  300 (356)
                      ++.+..+.|.||+...+|+|+.  .|+.||++|++++.+-   ++   ...|++||.+++|+|.+|...| +++++++++
T Consensus        35 ~~~~~~~~i~pG~~~~~H~H~~--~e~~~vl~G~~~~~~~---~~---~~~l~~Gd~~~ip~~~~H~~~n~~~~~~~~l~  106 (114)
T d1vj2a_          35 NFVMRLFTVEPGGLIDRHSHPW--EHEIFVLKGKLTVLKE---QG---EETVEEGFYIFVEPNEIHGFRNDTDSEVEFLC  106 (114)
T ss_dssp             SEEEEEEEEEEEEEEEEECCSS--CEEEEEEESEEEEECS---SC---EEEEETTEEEEECTTCCEEEECCSSSCEEEEE
T ss_pred             ceEEEEEEECCCCCCCceECCC--cEEEEEEEceeEEEEe---ee---eeEEecCeEEEEcCCCeEEEEeCCCCCEEEEE
Confidence            4678889999999999999964  6899999999988752   22   2579999999999999999954 788999999


Q ss_pred             EEcC
Q 018395          301 IITT  304 (356)
Q Consensus       301 ~~~~  304 (356)
                      +...
T Consensus       107 iip~  110 (114)
T d1vj2a_         107 LIPK  110 (114)
T ss_dssp             EEEG
T ss_pred             EECC
Confidence            8743

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.95  E-value=1.4e-09  Score=87.75  Aligned_cols=74  Identities=16%  Similarity=0.228  Sum_probs=61.5

Q ss_pred             cCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEE
Q 018395           34 QGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLF  112 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~  112 (356)
                      +.++.+...+++||..   ||| ..+|++||++|++.+.+   ++  +.+.|++||+++||+|..|++.|.+  ++++++
T Consensus        51 ~~~~~~~~~~~~~g~~---~~~~~~~E~~~vl~G~~~~~~---~g--~~~~l~~Gd~~~~p~g~~h~~~~~~--~~~~~~  120 (128)
T d2pyta1          51 GSSMAAGFMQWDNAFF---PWTLNYDEIDMVLEGELHVRH---EG--ETMIAKAGDVMFIPKGSSIEFGTPT--SVRFLY  120 (128)
T ss_dssp             TCSSEEEEEEEEEEEE---EEECSSEEEEEEEEEEEEEEE---TT--EEEEEETTCEEEECTTCEEEEEEEE--EEEEEE
T ss_pred             CCceEEEEEEECCCcc---ceeCCccEEEEEEEeEEEEEE---CC--EEEEecCCCEEEECCCCEEEEEeCC--CEEEEE
Confidence            3467888999999863   666 99999999999999986   33  3589999999999999999999975  478888


Q ss_pred             EeeCC
Q 018395          113 LGDTS  117 (356)
Q Consensus       113 i~~~~  117 (356)
                      +..+.
T Consensus       121 v~~Pa  125 (128)
T d2pyta1         121 VAWPA  125 (128)
T ss_dssp             EEEST
T ss_pred             EECCC
Confidence            77643

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.95  E-value=4.5e-09  Score=98.92  Aligned_cols=93  Identities=16%  Similarity=0.090  Sum_probs=74.1

Q ss_pred             CCCeEEEEeCCCCC-CCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCC
Q 018395           16 GNGGSYHAWCPNEL-PMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPF   94 (356)
Q Consensus        16 ~~~G~i~~~~~~~~-p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~   94 (356)
                      .+++.++..++.+. +.+  ..+++....|+||....+|+|..++++||++|+|++.|   ++  +++++++||++++|+
T Consensus       236 ~~g~~l~y~nP~tg~~~~--~ti~~~~~~l~pG~~~~~hrH~~~~v~~v~~G~g~~~i---~g--~~~~~~~GDv~~vP~  308 (355)
T d3bu7a1         236 YDGLILRYTNPQTGGHPM--LTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV---GG--KRFDWSEHDIFCVPA  308 (355)
T ss_dssp             TTBEEEEECCTTTSSCSS--SSCEEEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE---TT--EEEEECTTCEEEECT
T ss_pred             CCceEEEeccccccCCCc--ceeeEEEEEECCCCccCCcCccCcEEEEEEECcEEEEE---CC--EEEEeeCCCEEEeCC
Confidence            35666777665432 333  35778888999999999999988899999999999987   33  358999999999999


Q ss_pred             CcEEEEEecCCCcEEEEEEee
Q 018395           95 GVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        95 G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      +..|+..|.++++..+++.+.
T Consensus       309 ~~~h~~~N~s~~e~~~Lf~~~  329 (355)
T d3bu7a1         309 WTWHEHCNTQERDDACLFSFN  329 (355)
T ss_dssp             TCCEEEEECCSSCCEEEEEEE
T ss_pred             CCcEEeecCCCCCcEEEEEec
Confidence            999999999877655554443

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.91  E-value=3.2e-09  Score=99.01  Aligned_cols=77  Identities=14%  Similarity=0.123  Sum_probs=66.8

Q ss_pred             CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      ..+++..++++||+...+||| ..+|++||++|++++.+   ++  ..+.+++||++++|+|..|++.|.++ +++++.+
T Consensus       212 ~~~~~~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~v---~~--~~~~~~~Gd~~~vP~g~~H~~~~~~~-~~~~l~~  285 (330)
T d1y3ta1         212 GQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT---DG--QEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGV  285 (330)
T ss_dssp             TSCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE---TT--EEEEECTTCEEEECTTCCEEEEECSS-SEEEEEE
T ss_pred             CcEEEEEEEECCCCccCccCcCCccEEEEEEecEEEEEE---CC--EEEEeCCCCEEEECcCCcEEeEeCCC-CeEEEEE
Confidence            357889999999999999999 78899999999999976   33  34899999999999999999999765 5899988


Q ss_pred             eeCC
Q 018395          114 GDTS  117 (356)
Q Consensus       114 ~~~~  117 (356)
                      +.++
T Consensus       286 ~~p~  289 (330)
T d1y3ta1         286 LVPG  289 (330)
T ss_dssp             EESS
T ss_pred             ECCc
Confidence            7643

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=98.91  E-value=5.3e-09  Score=84.87  Aligned_cols=91  Identities=22%  Similarity=0.130  Sum_probs=71.8

Q ss_pred             EEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCc
Q 018395          206 RVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFY  285 (356)
Q Consensus       206 ~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~  285 (356)
                      ++..+...+-|..   .+++..+.+.||+-..+|+|+.  .|+.||++|++++++-+   ..  ...+++||++++|+|.
T Consensus        21 ~~~~L~~~~~~~~---~~~~~~vtf~PG~~~~~H~H~~--~q~~~Vl~G~~~~~~~g---~~--~~~~~~Gd~v~ippg~   90 (134)
T d2f4pa1          21 WVKMLVTDENGVF---NTQVYDVVFEPGARTHWHSHPG--GQILIVTRGKGFYQERG---KP--ARILKKGDVVEIPPNV   90 (134)
T ss_dssp             EEEEEECCTTCSS---SCEEEEEEECTTCEECSEECTT--CEEEEEEEEEEEEEETT---SC--CEEEETTCEEEECTTC
T ss_pred             EEeeccCCCCCCc---eeEEEEEEECCCCcCccccCCC--CEEEEEEeCEEEEEECC---cc--eEEEcCCCeEEECCCC
Confidence            4444544444443   4889999999999999999986  49999999999988743   22  1369999999999999


Q ss_pred             EEEEeeC-CCCeEEEEEEcCCC
Q 018395          286 VVSKIAD-PDGLAWFSIITTPN  306 (356)
Q Consensus       286 ~h~~~~~-~~~~~~~~~~~~~~  306 (356)
                      .|+..|. ++++.++++..+.+
T Consensus        91 ~H~~~a~~~~~~~~lai~~~~~  112 (134)
T d2f4pa1          91 VHWHGAAPDEELVHIGISTQVH  112 (134)
T ss_dssp             CEEEEEBTTBCEEEEEEECCGG
T ss_pred             ceECccCCCCcEEEEEEEecCC
Confidence            9999764 66899999875544

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.87  E-value=6.5e-09  Score=79.84  Aligned_cols=80  Identities=10%  Similarity=0.020  Sum_probs=62.3

Q ss_pred             CCCccccCceeEEEEecCCCee--cccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee-
Q 018395          215 LPLVGEVGCGADLVRLDGKAMC--SPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA-  291 (356)
Q Consensus       215 ~p~l~~l~~s~~~v~l~~g~~~--~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~-  291 (356)
                      ||.....++.+..+.|.||+-.  .+|+| . +.|++||++|++++.+-    .+  ...|++||.+.||.+.+|...| 
T Consensus        14 ~p~~~~~~~e~~~~~l~pg~~~~~~~H~h-~-~~E~~~Vl~G~~~~~~~----~~--~~~l~~GD~~~~~~~~~H~~~n~   85 (99)
T d1y9qa2          14 FPYAADTGLEIFEITLLDHHQQMSSPHAL-G-VIEYIHVLEGIMKVFFD----EQ--WHELQQGEHIRFFSDQPHGYAAV   85 (99)
T ss_dssp             EEEETTTTEEEEEEEECTTCEEEECCCST-T-CEEEEEEEESCEEEEET----TE--EEEECTTCEEEEECSSSEEEEES
T ss_pred             ecCCCcCCEEEEEEEEeCCcEeccccccC-C-cEEEEEEEcCceEEEec----ce--EEEecCCCEEEECCCCeEEEEeC
Confidence            4555556788999999999976  45665 3 78999999999999872    23  3579999999999999999955 


Q ss_pred             CCCCeEEEEEE
Q 018395          292 DPDGLAWFSII  302 (356)
Q Consensus       292 ~~~~~~~~~~~  302 (356)
                      +++++.++.+.
T Consensus        86 ~~~~~~~~vi~   96 (99)
T d1y9qa2          86 TEKAVFQNIVA   96 (99)
T ss_dssp             SSCEEEEEEEE
T ss_pred             CccCEEEEEEe
Confidence            56666444443

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=3.6e-08  Score=90.91  Aligned_cols=89  Identities=17%  Similarity=0.108  Sum_probs=69.0

Q ss_pred             CCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCc
Q 018395           17 NGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGV   96 (356)
Q Consensus        17 ~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~   96 (356)
                      .++.+...+...... ....+.+....|+||....+|+|+.++++||++|++++.+   ++  +..++++||++++|++.
T Consensus       203 ~g~~v~~~~~~~~~~-~~~t~~~~~~~l~pG~~~~~h~h~~~~~~~v~~G~g~~~v---~~--~~~~~~~GD~~~vP~~~  276 (308)
T d2d40a1         203 DGYKMRYVNPVTGGY-PMPSMGAFLQLLPKGFASRVARTTDSTIYHVVEGSGQVII---GN--ETFSFSAKDIFVVPTWH  276 (308)
T ss_dssp             TBEEEEECCTTTSSC-SSSSCEEEEEEECTTCBCCCBEESSCEEEEEEEEEEEEEE---TT--EEEEEETTCEEEECTTC
T ss_pred             CceEEEeeccccccC-ccceeEEEEEEccCCCccCCccCChheEEEEEeCcEEEEE---CC--EEEEEeCCCEEEeCCCC
Confidence            455666655543211 2345778889999999999999988999999999999887   33  34799999999999999


Q ss_pred             EEEEEecCCCcEEEEEE
Q 018395           97 VTWWYNKEDTELVVLFL  113 (356)
Q Consensus        97 ~H~~~N~g~e~l~~l~i  113 (356)
                      .|+..|.++.  .++.+
T Consensus       277 ~h~~~~~~d~--~l~~v  291 (308)
T d2d40a1         277 GVSFQTTQDS--VLFSF  291 (308)
T ss_dssp             CEEEEEEEEE--EEEEE
T ss_pred             eEEEEcCCCe--EEEEE
Confidence            9999997654  34444

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.69  E-value=9.9e-08  Score=89.47  Aligned_cols=89  Identities=12%  Similarity=0.101  Sum_probs=69.7

Q ss_pred             CCeEEEEeCCCC-CCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCC
Q 018395           17 NGGSYHAWCPNE-LPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFG   95 (356)
Q Consensus        17 ~~G~i~~~~~~~-~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G   95 (356)
                      .++.++..+..+ .+.+.  .+++....|+||....+|+|.+++++||++|+|++.+   ++  ++.++++||++++|++
T Consensus       244 g~~~l~yvnp~tg~~~~~--t~~~~~~~l~pG~~~~~hrh~~~~v~~vi~G~g~~~i---~~--~~~~~~~gDvf~vP~~  316 (351)
T d2phda1         244 GHAAIRYVNPTTGGDVMP--TLRCEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVM---NG--ETTKLEKGDMFVVPSW  316 (351)
T ss_dssp             TEEEEEEBCTTTSSBSBT--TBEEEEEEECTTCBCCCEEESSCEEEEEEESCEEEEE---TT--EEEEECTTCEEEECTT
T ss_pred             cceeEEEeccccCCCcCC--cceEEEEEecCCCcCCCccccCcEEEEEEeCcEEEEE---CC--EEEEEcCCCEEEeCCC
Confidence            345566666544 34443  5677888899999999999988999999999999987   33  3489999999999999


Q ss_pred             cEEEEEecCCCcEEEEEEe
Q 018395           96 VVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        96 ~~H~~~N~g~e~l~~l~i~  114 (356)
                      ..|+..|+++  ..++.+.
T Consensus       317 ~~h~~~n~~~--~~Lf~~~  333 (351)
T d2phda1         317 VPWSLQAETQ--FDLFRFS  333 (351)
T ss_dssp             CCEEEEESSC--EEEEEEE
T ss_pred             CcEEEecCCC--eEEEEEC
Confidence            9999999654  4455443

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.58  E-value=2.2e-07  Score=72.54  Aligned_cols=72  Identities=17%  Similarity=0.165  Sum_probs=59.6

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      ++.+..+.|.||.-..+|+|+.  .|+.||++|++.+++   +| +  ...|++||++++|+|.+|...|. +++.++.+
T Consensus        36 ~~~i~~~~~~~G~~~~~H~h~~--~~~~~vl~G~~~~~~---~~-~--~~~l~~Gd~~~ip~~~~H~~~a~-~~~~~l~~  106 (112)
T d1yhfa1          36 DLGITVFSLDKGQEIGRHSSPG--DAMVTILSGLAEITI---DQ-E--TYRVAEGQTIVMPAGIPHALYAV-EAFQMLLV  106 (112)
T ss_dssp             TEEEEEEEECTTCEEEEECCSS--EEEEEEEESEEEEEE---TT-E--EEEEETTCEEEECTTSCEEEEES-SCEEEEEE
T ss_pred             CcEEEEEEECCCCCcceEECCC--CEEEEEEeCEEEEEE---cc-E--EEEecCCEEEEcCCCCeEEeEEC-CCcEEEEE
Confidence            5778889999999999999974  799999999999987   23 3  25799999999999999999774 45666554


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       107 v  107 (112)
T d1yhfa1         107 V  107 (112)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.57  E-value=1.9e-08  Score=84.79  Aligned_cols=67  Identities=19%  Similarity=0.320  Sum_probs=55.7

Q ss_pred             cccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeC
Q 018395           49 FALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDT  116 (356)
Q Consensus        49 ~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~  116 (356)
                      +...|.|..+|+.||++|+|.+.+-. +++.....+++||+++||+|+.||.....+..++++.++.+
T Consensus        92 F~~EH~H~~dEvr~vv~G~g~f~v~~-~d~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~aiRlF~~  158 (179)
T d1zrra1          92 FLNEHTHGEDEVRFFVEGAGLFCLHI-GDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDN  158 (179)
T ss_dssp             HHSCBEESSCEEEEEEESCCCCCEEC-SSCEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECC
T ss_pred             hcccccCCCceEEEEEeCeEEEEEEc-CCeEEEEEEcCCCEEEeCCCCeEccccCCCCCEEEEEEecC
Confidence            34689998899999999999998765 34555578999999999999999998777777888877754

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.52  E-value=1.6e-07  Score=75.16  Aligned_cols=73  Identities=11%  Similarity=0.250  Sum_probs=57.7

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+++....+.||+.   |||.. ..|+.||++|++.+.+   +|+.   ..|++||+++||+|..|...+. ++++++.+
T Consensus        53 ~~~~~~~~~~~g~~---~~~~~-~~E~~~vl~G~~~~~~---~g~~---~~l~~Gd~~~~p~g~~h~~~~~-~~~~~~~v  121 (128)
T d2pyta1          53 SMAAGFMQWDNAFF---PWTLN-YDEIDMVLEGELHVRH---EGET---MIAKAGDVMFIPKGSSIEFGTP-TSVRFLYV  121 (128)
T ss_dssp             SSEEEEEEEEEEEE---EEECS-SEEEEEEEEEEEEEEE---TTEE---EEEETTCEEEECTTCEEEEEEE-EEEEEEEE
T ss_pred             ceEEEEEEECCCcc---ceeCC-ccEEEEEEEeEEEEEE---CCEE---EEecCCCEEEECCCCEEEEEeC-CCEEEEEE
Confidence            47788888999864   77877 8999999999999985   3433   5799999999999999998653 45677766


Q ss_pred             EcCC
Q 018395          302 ITTP  305 (356)
Q Consensus       302 ~~~~  305 (356)
                      ...+
T Consensus       122 ~~Pa  125 (128)
T d2pyta1         122 AWPA  125 (128)
T ss_dssp             EEST
T ss_pred             ECCC
Confidence            5433

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=5.7e-07  Score=75.44  Aligned_cols=78  Identities=22%  Similarity=0.267  Sum_probs=64.2

Q ss_pred             EEEEEecCCCc----------ccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcE
Q 018395           39 AAKLALEKNGF----------ALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTEL  108 (356)
Q Consensus        39 ~~~~~l~Pg~~----------~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l  108 (356)
                      .-.++|.|..+          ...|.|..+|+.||++|+|.+.+-..+++.....+++||++.+|+|+.||..-+.+..+
T Consensus        64 ~D~i~l~p~~~pn~~~~~~~F~~EH~H~~~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~~~~v  143 (179)
T d1vr3a1          64 MDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNYV  143 (179)
T ss_dssp             EEEEEESTTTSTTHHHHHHHHHSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTCCE
T ss_pred             eEEEEECCccCCCHHHHHHHHhhceeCCCcEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCCCCCE
Confidence            45667877652          35899988999999999999998776666666789999999999999999988777778


Q ss_pred             EEEEEeeC
Q 018395          109 VVLFLGDT  116 (356)
Q Consensus       109 ~~l~i~~~  116 (356)
                      +++-+|..
T Consensus       144 ~aiRlF~~  151 (179)
T d1vr3a1         144 KAMRLFVG  151 (179)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEECC
Confidence            88877763

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=98.36  E-value=1.9e-06  Score=68.23  Aligned_cols=77  Identities=9%  Similarity=0.072  Sum_probs=59.5

Q ss_pred             CceeEEEEecCCCeecccc---cccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee--CCCCe
Q 018395          222 GCGADLVRLDGKAMCSPGF---SCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA--DPDGL  296 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~---h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~--~~~~~  296 (356)
                      .|-...+.+.|++-..+.+   | . ..|++||++|++.+.+-+....+  ...|++||.++||++.+|...|  |++.+
T Consensus        40 ~~~~~~i~v~~~~~~~~~~~~~H-~-~eE~~yVl~G~~~~~~g~~~~~~--~~~l~~GDsi~~~~~~pH~~~n~~g~~~a  115 (122)
T d2bnma2          40 SLVPLVVDVLTDNPDDAKFNSGH-A-GNEFLFVLEGEIHMKWGDKENPK--EALLPTGASMFVEEHVPHAFTAAKGTGSA  115 (122)
T ss_dssp             TCEEEEEEECCCCGGGCCCCCCC-S-SCEEEEEEESCEEEEESCTTSCE--EEEECTTCEEEECTTCCEEEEESTTSCCE
T ss_pred             ccEeEEEEEeCCCCCccccCCCc-c-cEEEEEEEEEEEEEEEecccCCE--EEEEccCcEEEeCCCCCEEEEcCCCCccE
Confidence            4667888899988765433   4 3 68999999999999986542222  3579999999999999999844  57788


Q ss_pred             EEEEEE
Q 018395          297 AWFSII  302 (356)
Q Consensus       297 ~~~~~~  302 (356)
                      .+++++
T Consensus       116 ~~l~Vt  121 (122)
T d2bnma2         116 KLIAVN  121 (122)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            888764

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=98.18  E-value=1.5e-05  Score=63.91  Aligned_cols=100  Identities=13%  Similarity=-0.061  Sum_probs=70.6

Q ss_pred             eeeCCCeEEEEeCCCCCCCcccCceEEEE-EEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEE
Q 018395           13 VYGGNGGSYHAWCPNELPMLRQGNIGAAK-LALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGI   90 (356)
Q Consensus        13 ~~~~~~G~i~~~~~~~~p~l~~~~~~~~~-~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~   90 (356)
                      .+.-+-|.+......+.-...-.  ++.. ....+|.++..|+| ...++++|++|+..+.+.+........-.+.++.+
T Consensus         9 ~~~D~RG~l~~i~~~~~~~f~~k--r~~~~~~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~~~~l   86 (135)
T d2pa7a1           9 KIIDSRGSLVAIEENKNIPFSIK--RVYYIFDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGL   86 (135)
T ss_dssp             EEEETTEEEEEEETTTTSSSCCC--EEEEEESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEE
T ss_pred             ceECCCCCEEEEEcccccccccc--eEEEEecCCCCcEEeeeccccccEEEEecccEEEEEEEeccccceeecccCCcee
Confidence            45556788765544332222222  2333 34688999999999 99999999999999988776554333333888999


Q ss_pred             EeCCCcEEEEEecCCCcEEEEEEee
Q 018395           91 ALPFGVVTWWYNKEDTELVVLFLGD  115 (356)
Q Consensus        91 ~iP~G~~H~~~N~g~e~l~~l~i~~  115 (356)
                      +||+|+.|.+.+.+++ ..++.+.+
T Consensus        87 ~IPpg~~h~~~~l~~~-s~ll~l~~  110 (135)
T d2pa7a1          87 YVGPAVWHEMHDFSSD-CVMMVLAS  110 (135)
T ss_dssp             EECTTCEEEEECCCTT-CEEEEEES
T ss_pred             eeCCCEeeeEEecCCC-cEEEEEcC
Confidence            9999999999998765 45555444

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.99  E-value=2.3e-06  Score=71.73  Aligned_cols=67  Identities=15%  Similarity=0.167  Sum_probs=55.2

Q ss_pred             eecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCC-CeEEEEEEcCC
Q 018395          235 MCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPD-GLAWFSIITTP  305 (356)
Q Consensus       235 ~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~-~~~~~~~~~~~  305 (356)
                      +...|.|+.  .|+.||++|++++.+-+. + +.+.-.+++||+++||+|..|+...+.+ .+..+.++.+.
T Consensus        92 F~~EH~H~~--dEvr~vv~G~g~f~v~~~-d-~~~~v~~~~GDli~vPag~~H~F~~~~~~~~~aiRlF~~~  159 (179)
T d1zrra1          92 FLNEHTHGE--DEVRFFVEGAGLFCLHIG-D-EVFQVLCEKNDLISVPAHTPHWFDMGSEPNFTAIRIFDNP  159 (179)
T ss_dssp             HHSCBEESS--CEEEEEEESCCCCCEECS-S-CEEEEECCCSCEEEECTTCCBCCCCSSCSSCEEEEEECCG
T ss_pred             hcccccCCC--ceEEEEEeCeEEEEEEcC-C-eEEEEEEcCCCEEEeCCCCeEccccCCCCCEEEEEEecCC
Confidence            457899975  699999999999998874 3 4566789999999999999999977654 58888887544

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=97.98  E-value=8e-06  Score=66.41  Aligned_cols=101  Identities=7%  Similarity=-0.223  Sum_probs=67.9

Q ss_pred             CceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           35 GNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      .+....+++++||+..++|+|.+.|.+|||+|+....-   +....-..+.+|+-++.|+|..|...- ++++.+++..+
T Consensus        41 tg~~~~l~r~~~G~~~p~H~H~~~e~~~VL~G~l~~~~---g~~~~g~~~~~g~y~~~Pag~~H~~~~-~~e~~~~~~~~  116 (144)
T d2o1qa1          41 MGSWTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVRG---GKAAGGDTAIAPGYGYESANARHDKTE-FPVASEFYMSF  116 (144)
T ss_dssp             TTEEEEEEEECTTEEECCEEESSCEEEEEEEEEEEETT---CGGGTSEEEESSEEEEECTTCEESCCE-EEEEEEEEEEE
T ss_pred             CCcEEEEEEeCCCcCcCCCccccCEEEEEEEEEEEecC---CCcCCCceEeCCceeEcCCCCeEcccc-CCCCEEEEEEE
Confidence            46778899999999999999999999999999986642   111112578899999999999997432 23455665544


Q ss_pred             eCCCCCCCCceeEEeecccccccccCcHHHHHhh
Q 018395          115 DTSKGHKAGEFTNFFLTGANGIFTGFSTEFVSRA  148 (356)
Q Consensus       115 ~~~~~~~pg~~~~f~lag~~s~l~~~~~~vl~~a  148 (356)
                      ..     |  .  .||.-..++++-++.+-+.++
T Consensus       117 ~G-----p--~--~~ld~dg~~~~~~~~~~~~~~  141 (144)
T d2o1qa1         117 LG-----P--L--TFVKPDGSPIAVIGWEDAQGA  141 (144)
T ss_dssp             ES-----C--E--EEECTTSCEEEEECHHHHHHH
T ss_pred             EC-----C--e--EEECCCCCEEEEEcHHHHHHH
Confidence            31     2  1  233333355655555444444

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=1.7e-05  Score=66.27  Aligned_cols=86  Identities=15%  Similarity=0.258  Sum_probs=65.1

Q ss_pred             EEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCc
Q 018395          206 RVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFY  285 (356)
Q Consensus       206 ~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~  285 (356)
                      -+..+++.++|.+..+-          .-+..-|.|+.  .|+.||++|+|.+.+-+.++ +.+.-.+++||+++||+|.
T Consensus        65 D~i~l~p~~~pn~~~~~----------~~F~~EH~H~~--~Evr~vl~G~G~f~v~~~~~-~~iri~~~~GDli~iPag~  131 (179)
T d1vr3a1          65 DIITICKDTLPNYEEKI----------KMFFEEHLHLD--EEIRYILEGSGYFDVRDKED-KWIRISMEKGDMITLPAGI  131 (179)
T ss_dssp             EEEEESTTTSTTHHHHH----------HHHHSCEECSS--CEEEEEEEEEEEEEEECTTS-CEEEEEEETTEEEEECTTC
T ss_pred             EEEEECCccCCCHHHHH----------HHHhhceeCCC--cEEEEEEeCcEEEEEECCCC-cEEEEEEeCCCEEEeCCCc
Confidence            34555556666654421          11467899975  69999999999999988764 5567789999999999999


Q ss_pred             EEEEeeCC-CCeEEEEEEcC
Q 018395          286 VVSKIADP-DGLAWFSIITT  304 (356)
Q Consensus       286 ~h~~~~~~-~~~~~~~~~~~  304 (356)
                      .|+.-.+. ..+..+-+|+.
T Consensus       132 ~HwFtl~~~~~v~aiRlF~~  151 (179)
T d1vr3a1         132 YHRFTLDEKNYVKAMRLFVG  151 (179)
T ss_dssp             CEEEEECTTCCEEEEEEESS
T ss_pred             cEeccCCCCCCEEEEEEECC
Confidence            99996654 45888887754

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=1.8e-05  Score=64.88  Aligned_cols=64  Identities=16%  Similarity=0.206  Sum_probs=50.9

Q ss_pred             cccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEE-EecCCCcEEEEEEeeCC
Q 018395           49 FALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWW-YNKEDTELVVLFLGDTS  117 (356)
Q Consensus        49 ~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~-~N~g~e~l~~l~i~~~~  117 (356)
                      +..||-++.-++.||++|+|.+.+   ++  +.+.+++||++++|+|.+|.. ...++++++++++....
T Consensus        30 ~~Rp~g~~~Y~l~yv~~G~G~~~i---~~--~~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~wl~F~~   94 (161)
T d2arca_          30 IDRPLGMKGYILNLTIRGQGVVKN---QG--REFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRP   94 (161)
T ss_dssp             EEETTCCSSEEEEEEEEECEEEEE---TT--EEEEECTTCEEEECTTCCEEEEECTTSSEEEEEEEEECC
T ss_pred             EECCCCCCCEEEEEEEEeEEEEEE---CC--EEEEecCCeEEEEcCCCcEEEEeCCCCCCEEEEEEEEeC
Confidence            346777777899999999999986   33  459999999999999999964 45566778887776543

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=97.79  E-value=1.7e-05  Score=64.43  Aligned_cols=75  Identities=9%  Similarity=0.001  Sum_probs=58.7

Q ss_pred             CceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          222 GCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       222 ~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      |.....+++.||+...+|+|+  +.|..||++|+.+.+--+...    ...+.+|+-++.|+|..|....+.|+++++..
T Consensus        42 g~~~~l~r~~~G~~~p~H~H~--~~e~~~VL~G~l~~~~g~~~~----g~~~~~g~y~~~Pag~~H~~~~~~e~~~~~~~  115 (144)
T d2o1qa1          42 GSWTAIFDCPAGSSFAAHVHV--GPGEYFLTKGKMDVRGGKAAG----GDTAIAPGYGYESANARHDKTEFPVASEFYMS  115 (144)
T ss_dssp             TEEEEEEEECTTEEECCEEES--SCEEEEEEEEEEEETTCGGGT----SEEEESSEEEEECTTCEESCCEEEEEEEEEEE
T ss_pred             CcEEEEEEeCCCcCcCCCccc--cCEEEEEEEEEEEecCCCcCC----CceEeCCceeEcCCCCeEccccCCCCEEEEEE
Confidence            677899999999999999997  568899999998665332221    13577999999999999986556677777765


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      +
T Consensus       116 ~  116 (144)
T d2o1qa1         116 F  116 (144)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=0.0069  Score=52.08  Aligned_cols=102  Identities=15%  Similarity=0.056  Sum_probs=70.9

Q ss_pred             cceeeCCCeEEEEeCCCCCCCccc---C---c-eEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEE
Q 018395           11 KQVYGGNGGSYHAWCPNELPMLRQ---G---N-IGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVV   82 (356)
Q Consensus        11 ~~~~~~~~G~i~~~~~~~~p~l~~---~---~-~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~   82 (356)
                      +.+-..+.|++..+....|..--+   .   . .-+..-++.||+-+.+|-| +-+-+-||++|+..-.  +.-+.  ..
T Consensus         8 ~~rg~~~~~wl~s~~~Fsf~~y~dp~~~~fg~l~v~ndd~~~pg~gf~~HpH~g~eivT~vl~G~~~H~--DS~G~--~~   83 (231)
T d1tq5a1           8 NERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVINDDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ--DSMGN--KE   83 (231)
T ss_dssp             GGSEEEECSSEEEEESSCBTTBCCSSCSCBTTEEEEEEEEECTTCEEEEEEECSCEEEEEEEESEEEEE--ESSSC--EE
T ss_pred             HHCCCCCCCCCcceEeeecCCccCccccCCCceEEEecceecCCCCCCCCCcCCeeEEEEEEeEEEEEC--CCCCC--cE
Confidence            334556778887776544422111   1   1 2245778999999999999 7777889999987653  44443  26


Q ss_pred             EEcCCCEEEeCCC--cEEEEEec-CCCcEEEEEEeeC
Q 018395           83 AIKKGDGIALPFG--VVTWWYNK-EDTELVVLFLGDT  116 (356)
Q Consensus        83 ~l~~GDv~~iP~G--~~H~~~N~-g~e~l~~l~i~~~  116 (356)
                      .+++||+-.+=+|  ..|.-.|. .+++++++-+...
T Consensus        84 ~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~~lQiWi~  120 (231)
T d1tq5a1          84 QVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWIM  120 (231)
T ss_dssp             EEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEEC
T ss_pred             EECCCcEEEEecCCcEEEEeeccccCCCeEEEEEEeC
Confidence            8999999999887  78888885 4446777766654

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=97.76  E-value=0.00027  Score=56.30  Aligned_cols=97  Identities=10%  Similarity=-0.060  Sum_probs=68.5

Q ss_pred             CCCcEEEEeCCCCCCCccccCceeEEE-EecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEE
Q 018395          202 KNGGRVVLLNTKNLPLVGEVGCGADLV-RLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFI  280 (356)
Q Consensus       202 ~~gG~~~~~~~~~~p~l~~l~~s~~~v-~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~v  280 (356)
                      ...|.+......+.-..+-  -.+..+ ...+|.++..|+|.. .+++.+|++|+.++.+.+......+ .-.+.++.++
T Consensus        12 D~RG~l~~i~~~~~~~f~~--kr~~~~~~~~~g~iRG~H~Hk~-~~q~~~vi~G~i~~~~~d~~~~~~~-~l~~~~~~l~   87 (135)
T d2pa7a1          12 DSRGSLVAIEENKNIPFSI--KRVYYIFDTKGEEPRGFHAHKK-LEQVLVCLNGSCRVILDDGNIIQEI-TLDSPAVGLY   87 (135)
T ss_dssp             ETTEEEEEEETTTTSSSCC--CEEEEEESCCSSCCEEEEEESS-CCEEEEEEESCEEEEEECSSCEEEE-EECCTTEEEE
T ss_pred             CCCCCEEEEEccccccccc--ceEEEEecCCCCcEEeeecccc-ccEEEEecccEEEEEEEecccccee-ecccCCceee
Confidence            4467777665544322211  013323 356899999999998 9999999999999999987654332 2347889999


Q ss_pred             EcCCcEEEEeeCCCCeEEEEEE
Q 018395          281 VPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       281 vP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      ||.|++|...+-++++.++.+.
T Consensus        88 IPpg~~h~~~~l~~~s~ll~l~  109 (135)
T d2pa7a1          88 VGPAVWHEMHDFSSDCVMMVLA  109 (135)
T ss_dssp             ECTTCEEEEECCCTTCEEEEEE
T ss_pred             eCCCEeeeEEecCCCcEEEEEc
Confidence            9999999997755566655543

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.45  E-value=9.7e-05  Score=54.59  Aligned_cols=52  Identities=19%  Similarity=0.332  Sum_probs=39.2

Q ss_pred             EecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE
Q 018395          229 RLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK  289 (356)
Q Consensus       229 ~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~  289 (356)
                      .-+||.+   +|+-. .+|++||++|++++.  +.+|..   .++++||+++||+|+--..
T Consensus        24 ~~~pg~f---~~~y~-~~E~~~ileG~v~i~--~~~G~~---~~~~aGD~~~~p~G~~~~W   75 (88)
T d1o5ua_          24 EKEVSEF---DWYYD-TNETCYILEGKVEVT--TEDGKK---YVIEKGDLVTFPKGLRCRW   75 (88)
T ss_dssp             EECSEEE---EEECS-SCEEEEEEEEEEEEE--ETTCCE---EEEETTCEEEECTTCEEEE
T ss_pred             eecCcEE---EEEcC-ccEEEEEEEeEEEEE--cCCCCE---EEEeCCCEEEECCCCEEEE
Confidence            4467654   34445 889999999999985  446655   3699999999999997443

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=97.43  E-value=0.0033  Score=59.61  Aligned_cols=65  Identities=17%  Similarity=0.208  Sum_probs=42.7

Q ss_pred             ceeEEEEecCCCeeccccc-ccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEee
Q 018395          223 CGADLVRLDGKAMCSPGFS-CDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIA  291 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h-~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~  291 (356)
                      .++.++++.++.-...-.+ .+ ..+|++|++|++++..-...+..   ..|++||+++||+|....+.+
T Consensus       357 F~v~~~~l~~~~~~~~~~~~~~-~~~Illv~~G~~~i~~~~~~~~~---~~l~~G~~~fIpa~~~~~i~~  422 (440)
T d1pmia_         357 FSVLQTIFDKSKGGKQVIEGLN-GPSIVIATNGKGTIQITGDDSTK---QKIDTGYVFFVAPGSSIELTA  422 (440)
T ss_dssp             CEEEEEECCTTTCCEEEECCCS-SCEEEEEEESEEEEEETTCGGGC---EEEETTCEEEECTTCCEEEEE
T ss_pred             eEEEEEEECCCCCceeeecCCC-CcEEEEEEcCEEEEEecCCCccE---EEeCCceEEEEcCCceEEEEe
Confidence            4566777765432211111 23 56899999999988764433222   479999999999998766544

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.42  E-value=0.0002  Score=52.83  Aligned_cols=56  Identities=25%  Similarity=0.448  Sum_probs=42.2

Q ss_pred             EEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEe
Q 018395           40 AKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYN  102 (356)
Q Consensus        40 ~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N  102 (356)
                      ..-.-+||.+   +|+ ..+|++|||+|++++.  +.+|. . .++++||++++|+|+.=.+.-
T Consensus        21 gvW~~~pg~f---~~~y~~~E~~~ileG~v~i~--~~~G~-~-~~~~aGD~~~~p~G~~~~W~v   77 (88)
T d1o5ua_          21 PIWEKEVSEF---DWYYDTNETCYILEGKVEVT--TEDGK-K-YVIEKGDLVTFPKGLRCRWKV   77 (88)
T ss_dssp             CEEEECSEEE---EEECSSCEEEEEEEEEEEEE--ETTCC-E-EEEETTCEEEECTTCEEEEEE
T ss_pred             ceEeecCcEE---EEEcCccEEEEEEEeEEEEE--cCCCC-E-EEEeCCCEEEECCCCEEEEEE
Confidence            3456677664   455 8899999999999985  34443 2 689999999999998755543

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=0.00047  Score=56.49  Aligned_cols=68  Identities=21%  Similarity=0.075  Sum_probs=57.1

Q ss_pred             EEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCC---CceEEEEEcCCCEEEeCCCcEEEEEecCCC
Q 018395           39 AAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPE---KEEKVVAIKKGDGIALPFGVVTWWYNKEDT  106 (356)
Q Consensus        39 ~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~---~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e  106 (356)
                      ..++.=.|+...--|+...+|++|=++|...+.+++.+   ++-+...+++||+|++|++++|.-+-..++
T Consensus        35 iVmvVGGPN~R~DyH~~~~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPqR~~~t  105 (175)
T d1zvfa1          35 TVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADT  105 (175)
T ss_dssp             EEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTC
T ss_pred             EEEEEcCCCcccccccCcchhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCCCCCCc
Confidence            34566689998888998999999999999999999864   334567899999999999999999876554

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=97.36  E-value=0.00039  Score=56.99  Aligned_cols=64  Identities=17%  Similarity=0.067  Sum_probs=55.9

Q ss_pred             EEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec
Q 018395           39 AAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK  103 (356)
Q Consensus        39 ~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~  103 (356)
                      ..++.=.|+...--|++..+|++|=++|...+.++.. ++.+...+++||++++|+.++|.-+-.
T Consensus        37 iVMvVGGPN~R~DyH~~~~eE~FyQlkG~m~Lkv~e~-g~~~di~I~EGe~fLLP~~vpHSPqR~  100 (174)
T d1yfua1          37 IVTVVGGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVD-GRRERADLKEGDIFLLPPHVRHSPQRP  100 (174)
T ss_dssp             EEEEECSCBCCCCEEECSSCEEEEEEESCEEEEEEET-TEEEEEEECTTCEEEECTTCCEEEEBC
T ss_pred             EEEEecCCcccCccccCcchhheeeeccceEEEEEeC-CceEEEEcCCCcEEEeCCCCCCCcccC
Confidence            4556778888888888899999999999999999875 456678999999999999999999874

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.073  Score=46.86  Aligned_cols=195  Identities=12%  Similarity=-0.033  Sum_probs=117.1

Q ss_pred             EEEEEecCCCcccCeee-CCCEEEEEEeCe-EEEEEEcCCCceEEEEEcCCCEEEeCCC--cEEEEEecCCCcEEEEEEe
Q 018395           39 AAKLALEKNGFALPHYC-DSARVAYVLQGS-GVAGIVLPEKEEKVVAIKKGDGIALPFG--VVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        39 ~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~-~~~~vv~~~~~~~~~~l~~GDv~~iP~G--~~H~~~N~g~e~l~~l~i~  114 (356)
                      +....+.|+.-+.+|-| .-+-+-||++|. ..-  -+.-|.  ...+++||+-.+-+|  +.|.-.|..+++++++-+.
T Consensus        40 ~d~~~~~~~~gf~~HPH~g~e~vTy~~~G~~~~H--~Ds~G~--~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~lQiW  115 (288)
T d1j1la_          40 FDEFKGGRPGGFPDHPHRGFETVSYLLEGGSMAH--EDFCGH--TGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLW  115 (288)
T ss_dssp             EEEEEECTTCBEEEEEEBSEEEEEEECSSSCEEE--EETTSC--EEEECTTCEEEEECTTCEEEEEEECSSSCEEEEEEE
T ss_pred             eEcCcCCCCCCCCCCCcCCeEEEEEEEeCCeEEE--ecCCCC--eeEecCCCEEEEecccceEecccccccccceeeEEE
Confidence            44567778777899999 666678889985 433  233333  369999999999887  7899999888888888776


Q ss_pred             eCCCCCC-CCceeEEeecccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcCCCCCcccCCCceeecc
Q 018395          115 DTSKGHK-AGEFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKLPEPKKEHRDGMAFNCE  193 (356)
Q Consensus       115 ~~~~~~~-pg~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~~~p~~~~~~~~~~~l~  193 (356)
                      .+.+... ........          ++.              +.+...+..+..+++-.+                   
T Consensus       116 inlp~~~k~~~P~y~~----------~~~--------------~diP~~~~~~~~~~vi~G-------------------  152 (288)
T d1j1la_         116 VNLRSSEKMVEPQYQE----------LKS--------------EEIPKPSKDGVTVAVISG-------------------  152 (288)
T ss_dssp             EECCGGGTTSCCEEEE----------ECG--------------GGSCCCEETTEEEEEEES-------------------
T ss_pred             ecCChhhccccccccc----------ccc--------------ccCcccccccceEEEEec-------------------
Confidence            6432111 01111111          110              011111111222222111                   


Q ss_pred             CCCCCcccCCCcEEEEeCCCCCCCccccCceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEe
Q 018395          194 EAPLDVDIKNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTV  273 (356)
Q Consensus       194 ~~~~~~~~~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l  273 (356)
                        .             ....+-|......+.+..+.|++|+....-.... -.-++||++|++.+.-..  .    ...+
T Consensus       153 --~-------------~~g~~~pi~~~s~~~~~~i~l~~g~~~~~~l~~~-~~~~lyvi~G~~~v~g~~--~----~~~l  210 (288)
T d1j1la_         153 --E-------------ALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKG-WTSFIYTISGDVYIGPDD--A----QQKI  210 (288)
T ss_dssp             --E-------------ETTEECCCCCSSCEEEEEEEECTTCEEEEECCTT-CEEEEEEEESCEEESCTT--S----CEEE
T ss_pred             --c-------------ccccccccccCCchhhhhhhcccCceEEEecCCC-CeEEEEEEEeeEEecCcc--c----ceee
Confidence              0             0000112222234678889999999986555444 567999999999876221  1    2357


Q ss_pred             cCCcEEEEcCCcEEEEee-CCCCeEEEEEE
Q 018395          274 KAGNLFIVPRFYVVSKIA-DPDGLAWFSII  302 (356)
Q Consensus       274 ~~Gdv~vvP~g~~h~~~~-~~~~~~~~~~~  302 (356)
                      .++++.++-.|-.-.+.+ +.++++++.+-
T Consensus       211 ~~~~~~~l~~gd~~~i~~~~~~~a~~LLl~  240 (288)
T d1j1la_         211 EPHHTAVLGEGDSVQVENKDPKRSHFVLIA  240 (288)
T ss_dssp             CTTEEEEECSCSEEEEECCSSSCEEEEEEE
T ss_pred             cCceEEEEcCCCeEEEEeCCCCCCEEEEEE
Confidence            888888888887655644 56788887765

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=97.09  E-value=0.0017  Score=57.99  Aligned_cols=66  Identities=17%  Similarity=0.226  Sum_probs=51.3

Q ss_pred             EEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCC----------------------------------ceEEEEEc
Q 018395           40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEK----------------------------------EEKVVAIK   85 (356)
Q Consensus        40 ~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~----------------------------------~~~~~~l~   85 (356)
                      ....-.+|+...+|+...+-++..++|+=+..+..|..                                  ......|+
T Consensus       125 ~~~~~~~g~~~~~H~D~~d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  204 (319)
T d1vrba1         125 IVYAAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLT  204 (319)
T ss_dssp             EEEEECSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEEC
T ss_pred             EEEecCCCCCCccccCCCceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEEC
Confidence            34444566677899887778888999999998887532                                  11346899


Q ss_pred             CCCEEEeCCCcEEEEEecCC
Q 018395           86 KGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        86 ~GDv~~iP~G~~H~~~N~g~  105 (356)
                      +||++|||+|+.|+..|.++
T Consensus       205 pGDvLYiP~gw~H~v~s~~~  224 (319)
T d1vrba1         205 PGTMLYLPRGLWHSTKSDQA  224 (319)
T ss_dssp             TTCEEEECTTCEEEEECSSC
T ss_pred             CCCEEEeCCCceEEeEecCC
Confidence            99999999999999998754

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=96.80  E-value=0.0017  Score=58.01  Aligned_cols=68  Identities=12%  Similarity=0.168  Sum_probs=50.2

Q ss_pred             cCCCeecccccccCCeeEEEEEeceEEEEEEccCCc---------------------------------eEEEEEecCCc
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGK---------------------------------RVLETTVKAGN  277 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~---------------------------------~~~~~~l~~Gd  277 (356)
                      ..|+-..||+.+.  +-+.+.++|+=++.+..|...                                 ..+...|+|||
T Consensus       130 ~~g~~~~~H~D~~--d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD  207 (319)
T d1vrba1         130 KNGGGFKAHFDAY--TNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGT  207 (319)
T ss_dssp             CSSCCCCSEECSS--EEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTC
T ss_pred             CCCCCCccccCCC--ceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCCC
Confidence            3455578999764  568888999999999987420                                 12456899999


Q ss_pred             EEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          278 LFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       278 v~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      +++||+||+|+..+-+ +..-+.+
T Consensus       208 vLYiP~gw~H~v~s~~-~sis~sv  230 (319)
T d1vrba1         208 MLYLPRGLWHSTKSDQ-ATLALNI  230 (319)
T ss_dssp             EEEECTTCEEEEECSS-CEEEEEE
T ss_pred             EEEeCCCceEEeEecC-CeEEEEE
Confidence            9999999999987533 3444444

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.62  E-value=0.015  Score=48.27  Aligned_cols=78  Identities=12%  Similarity=0.035  Sum_probs=58.4

Q ss_pred             EecCCCcccCeee-C---CCEEEEEEeCeEEEEEEcCC------CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEE
Q 018395           43 ALEKNGFALPHYC-D---SARVAYVLQGSGVAGIVLPE------KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVV  110 (356)
Q Consensus        43 ~l~Pg~~~~pH~h-~---a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~  110 (356)
                      .-.+|.++..|+| .   ...+++|++|+....+++..      ++.....|.+  +..++||+|.+|.....+++ ..+
T Consensus        53 ~s~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~-~~i  131 (183)
T d1dzra_          53 KSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEY-AEF  131 (183)
T ss_dssp             EEETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEE
T ss_pred             eeccceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCc-ceE
Confidence            4479999999998 2   46899999999999998842      3445677865  45999999999999998664 455


Q ss_pred             EEEeeCCCCCCCC
Q 018395          111 LFLGDTSKGHKAG  123 (356)
Q Consensus       111 l~i~~~~~~~~pg  123 (356)
                      +...+ . ..+|+
T Consensus       132 ~Y~~~-~-~y~p~  142 (183)
T d1dzra_         132 LYKAT-N-YYSPS  142 (183)
T ss_dssp             EEEES-S-CCCTT
T ss_pred             EEeCC-c-ccCcc
Confidence            55433 2 34564

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.61  E-value=0.017  Score=52.04  Aligned_cols=60  Identities=18%  Similarity=0.255  Sum_probs=40.3

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeC
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIAD  292 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~  292 (356)
                      .++.++++.. ...  ..... ...+++|++|++.+..   ++.   +..|++||.++||++...+.+-|
T Consensus       247 F~~~~~~~~~-~~~--~~~~~-~~~il~vi~G~~~i~~---~~~---~~~l~~G~~~~ipa~~~~~~i~G  306 (315)
T d1qwra_         247 FSVYKWDING-EAE--MAQDE-SFLICSVIEGSGLLKY---EDK---TCPLKKGDHFILPAQMPDFTIKG  306 (315)
T ss_dssp             CEEEEEEEEE-EEE--ECCCS-SCEEEEEEEEEEEEEE---TTE---EEEEETTCEEEECTTCCCEEEEE
T ss_pred             EEEEEEEecC-cEE--eccCC-CcEEEEEEeCeEEEEE---CCE---EEEEecCcEEEEECCCCCEEEEe
Confidence            4566666653 222  11223 6689999999987753   222   24699999999999987776544

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.51  E-value=0.02  Score=47.98  Aligned_cols=72  Identities=15%  Similarity=0.144  Sum_probs=56.5

Q ss_pred             EecCCCcccCeee----CCCEEEEEEeCeEEEEEEcCC------CceEEEEEcCC--CEEEeCCCcEEEEEecCCCcEEE
Q 018395           43 ALEKNGFALPHYC----DSARVAYVLQGSGVAGIVLPE------KEEKVVAIKKG--DGIALPFGVVTWWYNKEDTELVV  110 (356)
Q Consensus        43 ~l~Pg~~~~pH~h----~a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~G--Dv~~iP~G~~H~~~N~g~e~l~~  110 (356)
                      .-.+|.++.+|++    ....+++|++|+....+++-.      ++.....|...  ..++||+|.+|.....++. ..+
T Consensus        52 ~S~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~-~~i  130 (198)
T d2ixca1          52 VSSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDN-STV  130 (198)
T ss_dssp             EECTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSS-EEE
T ss_pred             eeehhhheeeeeecccchhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCc-cee
Confidence            3379999999997    367899999999999998743      34456788764  5999999999999998765 555


Q ss_pred             EEEee
Q 018395          111 LFLGD  115 (356)
Q Consensus       111 l~i~~  115 (356)
                      ++..+
T Consensus       131 ~Y~~s  135 (198)
T d2ixca1         131 MYLCS  135 (198)
T ss_dssp             EEEES
T ss_pred             ecccC
Confidence            55443

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0029  Score=50.95  Aligned_cols=58  Identities=16%  Similarity=0.153  Sum_probs=43.8

Q ss_pred             CeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEE-eeC-CCCeEEE
Q 018395          234 AMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSK-IAD-PDGLAWF  299 (356)
Q Consensus       234 ~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~-~~~-~~~~~~~  299 (356)
                      .+..||-|+  ..++.||++|+|.+.+=+    +  ...+++||++++|.|.+|.. .+. +++.+++
T Consensus        29 ~~~Rp~g~~--~Y~l~yv~~G~G~~~i~~----~--~y~l~~Gdl~li~P~~~H~y~~~~~~~~w~~~   88 (161)
T d2arca_          29 FIDRPLGMK--GYILNLTIRGQGVVKNQG----R--EFVCRPGDILLFPPGEIHHYGRHPEAREWYHQ   88 (161)
T ss_dssp             CEEETTCCS--SEEEEEEEEECEEEEETT----E--EEEECTTCEEEECTTCCEEEEECTTSSEEEEE
T ss_pred             eEECCCCCC--CEEEEEEEEeEEEEEECC----E--EEEecCCeEEEEcCCCcEEEEeCCCCCCEEEE
Confidence            356788875  589999999999997432    3  35799999999999999964 443 4555444

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.48  E-value=0.0066  Score=50.18  Aligned_cols=71  Identities=17%  Similarity=0.178  Sum_probs=54.8

Q ss_pred             EecCCCcccCeee-C---CCEEEEEEeCeEEEEEEcCC------CceEEEEEc--CCCEEEeCCCcEEEEEecCCCcEEE
Q 018395           43 ALEKNGFALPHYC-D---SARVAYVLQGSGVAGIVLPE------KEEKVVAIK--KGDGIALPFGVVTWWYNKEDTELVV  110 (356)
Q Consensus        43 ~l~Pg~~~~pH~h-~---a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~--~GDv~~iP~G~~H~~~N~g~e~l~~  110 (356)
                      .-.+|.++.+|+| .   ...+++|++|+....+++..      ++.....|.  .+.+++||+|..|.....+++ ..+
T Consensus        51 ~s~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~-~~i  129 (176)
T d1wlta1          51 FSRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDS-IVI  129 (176)
T ss_dssp             EECTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSE-EEE
T ss_pred             eechheeeecccccccCCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeecccc-ceE
Confidence            3489999999998 3   34699999999999998742      344456675  566999999999999998765 455


Q ss_pred             EEEe
Q 018395          111 LFLG  114 (356)
Q Consensus       111 l~i~  114 (356)
                      ++..
T Consensus       130 ~Y~~  133 (176)
T d1wlta1         130 YFIT  133 (176)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            5544

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.45  E-value=0.0097  Score=49.45  Aligned_cols=72  Identities=7%  Similarity=0.016  Sum_probs=55.1

Q ss_pred             cCCCeecccccc--cCCeeEEEEEeceEEEEEEccCC-----ceEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFSC--DSALQVTYIVRGSGRAQIVGPDG-----KRVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h~--~~A~ei~~v~~G~~~~~iv~~~g-----~~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+|-++..|+|.  ..-+++++|++|+...-++|...     .+.....|.+  +..++||.|++|-..+-.+++.++-.
T Consensus        55 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i~Y~  134 (183)
T d1dzra_          55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYK  134 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             ccceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceEEEe
Confidence            789999999974  21368999999999999999642     2345557766  45999999999999886666555554


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       135 ~  135 (183)
T d1dzra_         135 A  135 (183)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.38  E-value=0.012  Score=48.57  Aligned_cols=72  Identities=8%  Similarity=0.113  Sum_probs=54.2

Q ss_pred             cCCCeecccccc--cCCeeEEEEEeceEEEEEEccCCc-----eEEEEEec--CCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFSC--DSALQVTYIVRGSGRAQIVGPDGK-----RVLETTVK--AGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h~--~~A~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~--~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+|.++..|+|.  ..-+++++|++|++..-++|....     +.....|.  .+.+++||+|++|-..+-++++.++-.
T Consensus        53 ~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~~~i~Y~  132 (176)
T d1wlta1          53 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFI  132 (176)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEE
T ss_pred             chheeeecccccccCCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeeccccceEEEe
Confidence            789999999983  213579999999999999987521     33444565  566999999999999886666555544


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       133 ~  133 (176)
T d1wlta1         133 T  133 (176)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=96.34  E-value=0.013  Score=48.97  Aligned_cols=72  Identities=11%  Similarity=0.068  Sum_probs=57.0

Q ss_pred             ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCC--c----eEEEEEcCCCEEEeC--CCcEEEEEec-CCC
Q 018395           36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEK--E----EKVVAIKKGDGIALP--FGVVTWWYNK-EDT  106 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~--~----~~~~~l~~GDv~~iP--~G~~H~~~N~-g~e  106 (356)
                      .+.+..+...||...++|=|....++.|++|+....+....+  .    .....+++||+.++.  .|.+|.+.|. +++
T Consensus        67 ~f~i~~i~W~pG~~tpiHdH~~w~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~~~IH~v~N~~~~~  146 (192)
T d2gm6a1          67 RFSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDR  146 (192)
T ss_dssp             SCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSS
T ss_pred             CEEEEEEecCCCCCCCCCCCCCceEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCceeEEecCCCCc
Confidence            578889999999999999996678889999999888775322  1    124689999998874  4679999996 455


Q ss_pred             c
Q 018395          107 E  107 (356)
Q Consensus       107 ~  107 (356)
                      .
T Consensus       147 ~  147 (192)
T d2gm6a1         147 V  147 (192)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.32  E-value=0.012  Score=48.82  Aligned_cols=70  Identities=14%  Similarity=0.128  Sum_probs=54.7

Q ss_pred             cCCCcccCeee-C--CCEEEEEEeCeEEEEEEcCC------CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           45 EKNGFALPHYC-D--SARVAYVLQGSGVAGIVLPE------KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        45 ~Pg~~~~pH~h-~--a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      .+|.++..|++ .  ...+++|++|+....+++-.      ++.....|.+  +..++||+|.+|.....+++ ..++..
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~-~~i~Y~  132 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDE-CIVNYK  132 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             ccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCc-eEEEEe
Confidence            78999999998 3  47899999999999999843      3444567755  56899999999999998665 555554


Q ss_pred             ee
Q 018395          114 GD  115 (356)
Q Consensus       114 ~~  115 (356)
                      .+
T Consensus       133 ~s  134 (183)
T d1ep0a_         133 CT  134 (183)
T ss_dssp             ES
T ss_pred             cc
Confidence            44

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=96.32  E-value=0.025  Score=47.62  Aligned_cols=72  Identities=18%  Similarity=0.227  Sum_probs=55.3

Q ss_pred             EEecCCCcccCeee-C---CCEEEEEEeCeEEEEEEcCC------CceEEEEEc--CCCEEEeCCCcEEEEEecCCCcEE
Q 018395           42 LALEKNGFALPHYC-D---SARVAYVLQGSGVAGIVLPE------KEEKVVAIK--KGDGIALPFGVVTWWYNKEDTELV  109 (356)
Q Consensus        42 ~~l~Pg~~~~pH~h-~---a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~--~GDv~~iP~G~~H~~~N~g~e~l~  109 (356)
                      ..-.+|.++.+|+| .   ...+++|++|+....+++-.      ++.....|.  .+..++||+|..|.....++. ..
T Consensus        52 S~s~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~-t~  130 (202)
T d1oi6a_          52 SMSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDD-TV  130 (202)
T ss_dssp             EEECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTT-EE
T ss_pred             hcchhheeeeeeecccccchhheeeeccccEEEEEEecccCCCccceeeeeecccccceeEEeccceeEEEeecccc-ce
Confidence            34479999999999 3   46999999999999998742      333446665  456999999999999998765 45


Q ss_pred             EEEEe
Q 018395          110 VLFLG  114 (356)
Q Consensus       110 ~l~i~  114 (356)
                      +++..
T Consensus       131 v~Y~~  135 (202)
T d1oi6a_         131 MSYML  135 (202)
T ss_dssp             EEEEE
T ss_pred             eEEec
Confidence            55443

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=96.28  E-value=0.029  Score=46.52  Aligned_cols=81  Identities=15%  Similarity=0.014  Sum_probs=63.8

Q ss_pred             CceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCC---C----ceEEEEEcCCCEEEeCCC-cEEEEEecC-
Q 018395           35 GNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPE---K----EEKVVAIKKGDGIALPFG-VVTWWYNKE-  104 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~---~----~~~~~~l~~GDv~~iP~G-~~H~~~N~g-  104 (356)
                      .++.+..+...||...++|=| .+..++.|++|+.........   .    ...+..+++||+.++... -.|.+.|.+ 
T Consensus        64 ~~fel~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~  143 (186)
T d3elna1          64 GKFNLMILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSH  143 (186)
T ss_dssp             GTCEEEEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCS
T ss_pred             CCeEEEEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCC
Confidence            358899999999999999999 789999999999999887521   1    123578999999998765 499999987 


Q ss_pred             CCcEEEEEEee
Q 018395          105 DTELVVLFLGD  115 (356)
Q Consensus       105 ~e~l~~l~i~~  115 (356)
                      ++++..|=+..
T Consensus       144 ~~~avsLHvYs  154 (186)
T d3elna1         144 TEPAVSLHLYS  154 (186)
T ss_dssp             SCCEEEEEEEE
T ss_pred             CCCeEEEEEeC
Confidence            46655554443

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.27  E-value=0.08  Score=47.02  Aligned_cols=42  Identities=12%  Similarity=0.161  Sum_probs=32.6

Q ss_pred             CeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCC
Q 018395          245 ALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADP  293 (356)
Q Consensus       245 A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~  293 (356)
                      ...|++|++|++.+.    .++.   .+|++||.++||+....+.+.|+
T Consensus       247 ~~~il~~~~G~~~i~----~~~~---~~l~~G~s~~iPA~~~~~~i~g~  288 (299)
T d1zx5a1         247 VMNILYAAEGYFILR----GKET---ADLHRGYSCLVPASTDSFTVESE  288 (299)
T ss_dssp             BCEEEEEEESCEEEE----SSSE---EEECTTCEEEECTTCCEEEEEEE
T ss_pred             ceEEEEEeccEEEEe----CCCE---EEEcCCcEEEEecCCccEEEEcC
Confidence            568999999998653    2232   46999999999999888876553

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.24  E-value=0.0094  Score=49.51  Aligned_cols=73  Identities=12%  Similarity=0.038  Sum_probs=55.1

Q ss_pred             cCCCeecccccccC-CeeEEEEEeceEEEEEEccCCc-----eEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          231 DGKAMCSPGFSCDS-ALQVTYIVRGSGRAQIVGPDGK-----RVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       231 ~~g~~~~PH~h~~~-A~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      .+|.++..|+|... -.++++|++|+...-++|..-.     +.....|.+  +..++||.|++|-..+-.+++.++-..
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~  133 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKC  133 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             ccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCceEEEEec
Confidence            68999999997431 3689999999999999987521     334446655  669999999999998866666666554


Q ss_pred             c
Q 018395          303 T  303 (356)
Q Consensus       303 ~  303 (356)
                      +
T Consensus       134 s  134 (183)
T d1ep0a_         134 T  134 (183)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.14  E-value=0.022  Score=47.78  Aligned_cols=73  Identities=14%  Similarity=0.014  Sum_probs=56.8

Q ss_pred             cCCCeecccccc--cCCeeEEEEEeceEEEEEEccCCc-----eEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFSC--DSALQVTYIVRGSGRAQIVGPDGK-----RVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h~--~~A~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+|-++..|+|.  ..-.++++|++|++..-++|-...     +.+...|..  +..++||+|++|-..+-.+++.++-.
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~~~i~Y~  133 (198)
T d2ixca1          54 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYL  133 (198)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEE
T ss_pred             ehhhheeeeeecccchhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCcceeecc
Confidence            789999999973  226799999999999999997632     345567766  45999999999999886666666655


Q ss_pred             Ec
Q 018395          302 IT  303 (356)
Q Consensus       302 ~~  303 (356)
                      .+
T Consensus       134 ~s  135 (198)
T d2ixca1         134 CS  135 (198)
T ss_dssp             ES
T ss_pred             cC
Confidence            43

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0053  Score=55.66  Aligned_cols=66  Identities=14%  Similarity=0.121  Sum_probs=48.9

Q ss_pred             EEEecCCCcc-cCeeeCCCEEEEEEeCeEEEEEEcCCC-----------------------------------ceEEEEE
Q 018395           41 KLALEKNGFA-LPHYCDSARVAYVLQGSGVAGIVLPEK-----------------------------------EEKVVAI   84 (356)
Q Consensus        41 ~~~l~Pg~~~-~pH~h~a~e~~yVl~G~~~~~vv~~~~-----------------------------------~~~~~~l   84 (356)
                      .+-+.+.+.. ..|+-..+-++.+++|+=++.++.|..                                   +.....|
T Consensus       172 ~lwiG~~gs~t~~H~D~~~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~l  251 (335)
T d1h2ka_         172 LLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVV  251 (335)
T ss_dssp             EEEEECTTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEEE
T ss_pred             EEEEcCCCCCCccccccccceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEEE
Confidence            3555655544 456555567889999999998886531                                   1234689


Q ss_pred             cCCCEEEeCCCcEEEEEecCCC
Q 018395           85 KKGDGIALPFGVVTWWYNKEDT  106 (356)
Q Consensus        85 ~~GDv~~iP~G~~H~~~N~g~e  106 (356)
                      ++||+++||+|+.|++.|.++.
T Consensus       252 ~pGd~L~iP~~w~H~V~~~~~~  273 (335)
T d1h2ka_         252 GPGDVLYIPMYWWHHIESLLNG  273 (335)
T ss_dssp             CTTCEEEECTTCEEEEEECTTS
T ss_pred             CCCCEEeeCCCCeEEEEEcCCC
Confidence            9999999999999999997554

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.012  Score=53.20  Aligned_cols=66  Identities=15%  Similarity=0.212  Sum_probs=49.4

Q ss_pred             EEEecCCCee-cccccccCCeeEEEEEeceEEEEEEccCC----------------------------------ceEEEE
Q 018395          227 LVRLDGKAMC-SPGFSCDSALQVTYIVRGSGRAQIVGPDG----------------------------------KRVLET  271 (356)
Q Consensus       227 ~v~l~~g~~~-~PH~h~~~A~ei~~v~~G~~~~~iv~~~g----------------------------------~~~~~~  271 (356)
                      .+-+.+.+.. ..|+-+  .+-+.++++|+=++.++.|.-                                  .+.+..
T Consensus       172 ~lwiG~~gs~t~~H~D~--~~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~  249 (335)
T d1h2ka_         172 LLLIGMEGNVTPAHYDE--QQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYET  249 (335)
T ss_dssp             EEEEECTTCEEEEECCS--EEEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEE
T ss_pred             EEEEcCCCCCCcccccc--ccceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEE
Confidence            4556655555 457754  357999999999999997731                                  034667


Q ss_pred             EecCCcEEEEcCCcEEEEeeCCC
Q 018395          272 TVKAGNLFIVPRFYVVSKIADPD  294 (356)
Q Consensus       272 ~l~~Gdv~vvP~g~~h~~~~~~~  294 (356)
                      .|++||+++||+|++|+..+-.+
T Consensus       250 ~l~pGd~L~iP~~w~H~V~~~~~  272 (335)
T d1h2ka_         250 VVGPGDVLYIPMYWWHHIESLLN  272 (335)
T ss_dssp             EECTTCEEEECTTCEEEEEECTT
T ss_pred             EECCCCEEeeCCCCeEEEEEcCC
Confidence            89999999999999999976433

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=95.92  E-value=0.042  Score=45.69  Aligned_cols=71  Identities=11%  Similarity=0.067  Sum_probs=53.9

Q ss_pred             EecCCCcccCeee----CCCEEEEEEeCeEEEEEEcCC------CceEEEEE--cCCCEEEeCCCcEEEEEecCCCcEEE
Q 018395           43 ALEKNGFALPHYC----DSARVAYVLQGSGVAGIVLPE------KEEKVVAI--KKGDGIALPFGVVTWWYNKEDTELVV  110 (356)
Q Consensus        43 ~l~Pg~~~~pH~h----~a~e~~yVl~G~~~~~vv~~~------~~~~~~~l--~~GDv~~iP~G~~H~~~N~g~e~l~~  110 (356)
                      .-.+|.++..|++    ....+++|++|+....+++..      ++.....|  +.+..++||+|.+|-....++. ..+
T Consensus        52 ~s~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~-t~i  130 (190)
T d2c0za1          52 VSVRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDE-ATL  130 (190)
T ss_dssp             EEETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEE
T ss_pred             hhhhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCch-hee
Confidence            3478999999986    356899999999999998853      22223344  6889999999999999987654 455


Q ss_pred             EEEe
Q 018395          111 LFLG  114 (356)
Q Consensus       111 l~i~  114 (356)
                      +...
T Consensus       131 ~Y~~  134 (190)
T d2c0za1         131 CYLS  134 (190)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            5443

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.92  E-value=0.02  Score=47.45  Aligned_cols=70  Identities=10%  Similarity=0.019  Sum_probs=54.5

Q ss_pred             cCCCcccCeee---CCCEEEEEEeCeEEEEEEcCC------CceEEEEEcC--CCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           45 EKNGFALPHYC---DSARVAYVLQGSGVAGIVLPE------KEEKVVAIKK--GDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        45 ~Pg~~~~pH~h---~a~e~~yVl~G~~~~~vv~~~------~~~~~~~l~~--GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      .+|.++..|++   ....+++|++|+....+++..      ++.....|..  +..++||+|.+|.....+++ ..++..
T Consensus        57 ~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~~-~~v~Y~  135 (184)
T d2ixha1          57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEY-AEFLYK  135 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSE-EEEEEE
T ss_pred             ccCceEEEEEcccchhheecceeeeEEEEEEeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCCc-eEEEec
Confidence            68999999987   356899999999999888732      3455678866  56899999999999998665 444444


Q ss_pred             ee
Q 018395          114 GD  115 (356)
Q Consensus       114 ~~  115 (356)
                      .+
T Consensus       136 ~s  137 (184)
T d2ixha1         136 TT  137 (184)
T ss_dssp             ES
T ss_pred             cc
Confidence            33

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=95.86  E-value=0.036  Score=46.58  Aligned_cols=73  Identities=8%  Similarity=0.017  Sum_probs=54.5

Q ss_pred             ecCCCeecccccccC--CeeEEEEEeceEEEEEEccCC-----ceEEEEEec--CCcEEEEcCCcEEEEeeCCCCeEEEE
Q 018395          230 LDGKAMCSPGFSCDS--ALQVTYIVRGSGRAQIVGPDG-----KRVLETTVK--AGNLFIVPRFYVVSKIADPDGLAWFS  300 (356)
Q Consensus       230 l~~g~~~~PH~h~~~--A~ei~~v~~G~~~~~iv~~~g-----~~~~~~~l~--~Gdv~vvP~g~~h~~~~~~~~~~~~~  300 (356)
                      -.+|-++..|+|...  -.++++|++|++..-++|-..     .+.....|.  .+..++||.|++|-..+-++++.++-
T Consensus        54 s~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~t~v~Y  133 (202)
T d1oi6a_          54 SKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSY  133 (202)
T ss_dssp             ECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEEE
T ss_pred             chhheeeeeeecccccchhheeeeccccEEEEEEecccCCCccceeeeeecccccceeEEeccceeEEEeeccccceeEE
Confidence            378999999998431  359999999999999998642     123344555  45699999999999988766666554


Q ss_pred             EE
Q 018395          301 II  302 (356)
Q Consensus       301 ~~  302 (356)
                      ..
T Consensus       134 ~~  135 (202)
T d1oi6a_         134 ML  135 (202)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.83  E-value=0.027  Score=46.64  Aligned_cols=71  Identities=6%  Similarity=-0.032  Sum_probs=54.4

Q ss_pred             cCCCeeccccc--ccCCeeEEEEEeceEEEEEEccCCc-----eEEEEEecC--CcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFS--CDSALQVTYIVRGSGRAQIVGPDGK-----RVLETTVKA--GNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h--~~~A~ei~~v~~G~~~~~iv~~~g~-----~~~~~~l~~--Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+|.++..|++  +. -+++++|++|+...-++|....     +.....|..  +..++||+|++|-..+-.+++.++-.
T Consensus        57 ~kgvlRG~H~q~~~~-q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~~~~v~Y~  135 (184)
T d2ixha1          57 ARGVLRGLHYQIRQA-QGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYK  135 (184)
T ss_dssp             ETTBEEEEEEESSSC-CCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             ccCceEEEEEcccch-hheecceeeeEEEEEEeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCCceEEEec
Confidence            68999999986  32 4689999999999999986521     344557766  66899999999998876666555544


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       136 ~  136 (184)
T d2ixha1         136 T  136 (184)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=95.79  E-value=0.027  Score=46.89  Aligned_cols=72  Identities=10%  Similarity=-0.135  Sum_probs=54.7

Q ss_pred             cCCCeecccccc--cCCeeEEEEEeceEEEEEEccCCc-----e--EEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          231 DGKAMCSPGFSC--DSALQVTYIVRGSGRAQIVGPDGK-----R--VLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       231 ~~g~~~~PH~h~--~~A~ei~~v~~G~~~~~iv~~~g~-----~--~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      .+|-++..|+|.  ..-+++++|++|++..-++|....     +  .+.-....+.+++||+|++|-..+-+++..++-.
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~t~i~Y~  133 (190)
T d2c0za1          54 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYL  133 (190)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             hhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCchheeEEe
Confidence            689999999863  214589999999999999998632     1  2333557889999999999999776666655544


Q ss_pred             E
Q 018395          302 I  302 (356)
Q Consensus       302 ~  302 (356)
                      .
T Consensus       134 ~  134 (190)
T d2c0za1         134 S  134 (190)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=95.73  E-value=0.018  Score=48.10  Aligned_cols=70  Identities=13%  Similarity=0.025  Sum_probs=54.2

Q ss_pred             cCCCeecccccccCCeeEEEEE-eceEEEEEEccCCc----eEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          231 DGKAMCSPGFSCDSALQVTYIV-RGSGRAQIVGPDGK----RVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~-~G~~~~~iv~~~g~----~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      .+|-++..|+|+. + ++++|+ .|+...-++|....    +.+...|..+..++||+|++|-..+-++++.++-..
T Consensus        65 ~kgvlRGlH~q~~-~-k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~t~i~Y~~  139 (194)
T d1nxma_          65 RKNVLRGLHAEPW-D-KYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLV  139 (194)
T ss_dssp             ETTBEEEEEECSS-C-EEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             eeeEEEEEEeccc-h-hhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeeccceeEEEec
Confidence            6899999999986 5 555554 69999988876421    345668999999999999999998877766655544

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=95.42  E-value=0.03  Score=46.72  Aligned_cols=70  Identities=19%  Similarity=0.071  Sum_probs=54.5

Q ss_pred             ecCCCcccCeeeCCCEEEEEE-eCeEEEEEEcCC-----CceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           44 LEKNGFALPHYCDSARVAYVL-QGSGVAGIVLPE-----KEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        44 l~Pg~~~~pH~h~a~e~~yVl-~G~~~~~vv~~~-----~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      -.+|.++.+|++..+.+++|+ .|.....+++.-     ++.....|..+..++||+|.+|-....+++ ..+++..
T Consensus        64 S~kgvlRGlH~q~~~k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~-t~i~Y~~  139 (194)
T d1nxma_          64 SRKNVLRGLHAEPWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDF-VAYSYLV  139 (194)
T ss_dssp             EETTBEEEEEECSSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSE-EEEEEEE
T ss_pred             eeeeEEEEEEeccchhhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeeccc-eeEEEec
Confidence            368999999999667877776 598888777642     344568899999999999999999998765 4444443

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=95.26  E-value=0.037  Score=44.89  Aligned_cols=56  Identities=16%  Similarity=0.180  Sum_probs=44.4

Q ss_pred             cCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEe
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKI  290 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~  290 (356)
                      .|+.=.-=|+++  ..|+.|=++|...+.++.. |+ .-+-.+++||+|.+|+..+|.-+
T Consensus        43 GPN~R~DyH~~~--~eE~FyQlkG~m~Lkv~e~-g~-~~di~I~EGe~fLLP~~vpHSPq   98 (174)
T d1yfua1          43 GPNHRTDYHDDP--LEEFFYQLRGNAYLNLWVD-GR-RERADLKEGDIFLLPPHVRHSPQ   98 (174)
T ss_dssp             SCBCCCCEEECS--SCEEEEEEESCEEEEEEET-TE-EEEEEECTTCEEEECTTCCEEEE
T ss_pred             CCcccCccccCc--chhheeeeccceEEEEEeC-Cc-eEEEEcCCCcEEEeCCCCCCCcc
Confidence            555544445654  6899999999999999984 43 34668999999999999999974

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.18  E-value=0.026  Score=45.85  Aligned_cols=57  Identities=12%  Similarity=0.181  Sum_probs=45.6

Q ss_pred             cCCCeecccccccCCeeEEEEEeceEEEEEEccCC--ceEEEEEecCCcEEEEcCCcEEEE
Q 018395          231 DGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG--KRVLETTVKAGNLFIVPRFYVVSK  289 (356)
Q Consensus       231 ~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g--~~~~~~~l~~Gdv~vvP~g~~h~~  289 (356)
                      .|+.=.-=|+++  .-|+.|=++|...+-|++..+  .+..+-.+++||+|..|+..+|.-
T Consensus        41 GPN~R~DyH~~~--~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSP   99 (175)
T d1zvfa1          41 GPNERTDYHINP--TPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSP   99 (175)
T ss_dssp             SSBCCSCEEECS--SCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEE
T ss_pred             CCCcccccccCc--chhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCC
Confidence            666655556654  689999999999999998642  244466899999999999999985

>d1yuda1 b.82.1.16 (A:1-158) Hypothetical protein SO0799 {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein SO0799
species: Shewanella oneidensis [TaxId: 70863]

Probab=95.15  E-value=0.4  Score=38.21  Aligned_cols=129  Identities=18%  Similarity=0.190  Sum_probs=76.3

Q ss_pred             CCCeEEEEeC-CCCCCCcccCceEEEEEEecCCCcccCeeeCCCEEEEEEeCe-EEEEEEcCCCceEEEE----EcCCCE
Q 018395           16 GNGGSYHAWC-PNELPMLRQGNIGAAKLALEKNGFALPHYCDSARVAYVLQGS-GVAGIVLPEKEEKVVA----IKKGDG   89 (356)
Q Consensus        16 ~~~G~i~~~~-~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~-~~~~vv~~~~~~~~~~----l~~GDv   89 (356)
                      .+||++++.- +.....-....++....-|.++.....|-..++|+.+-..|. .++-++.+++......    +..|+.
T Consensus        17 PEGG~fret~rs~~~~~~~R~~~T~IY~LL~~~~~S~~Hrv~sdEiw~~~~G~pL~l~~~~~~g~~~~~~lG~d~~~ge~   96 (158)
T d1yuda1          17 VEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGER   96 (158)
T ss_dssp             TTSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCEEEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTTEE
T ss_pred             CCCceEEEEEeCCCCCCCCCcceEEEEEEecCCCCCceEEecCCeEEEEecCCCEEEEEecCCCCeEEeeeccCcCcCce
Confidence            3889997643 222112233456777888888876544444899999999988 6787778887654444    446765


Q ss_pred             --EEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCC-ceeEEeecccccccccCcHHHHHhhccCCHHHHHHh
Q 018395           90 --IALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAG-EFTNFFLTGANGIFTGFSTEFVSRAWDLDENTVKTL  159 (356)
Q Consensus        90 --~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg-~~~~f~lag~~s~l~~~~~~vl~~af~~~~~~~~~l  159 (356)
                        ++||+|+.....-..+ ...++....     .|| +|.+|-+         .+.+-|.+.|---++.+++|
T Consensus        97 ~q~vVp~g~w~~a~~~~g-~~sLvsctV-----aPGFdf~Dfel---------~~~~~L~~~~P~~~~~I~~l  154 (158)
T d1yuda1          97 PQFLVPKGCIFGSAMNQD-GFSLVGCMV-----SPGFTFDDFEL---------FSQEALLAMYPQHKAVVQKL  154 (158)
T ss_dssp             SCEEECTTCEEEEEESSS-SEEEEEEEE-----SSCCCGGGCCB---------CBHHHHHHSCCTTHHHHTTS
T ss_pred             eEEEEcCCCEEEEEEcCC-CcEEEEEEE-----cCCccchhccc---------cCHHHHHHHCchhHHHHHHH
Confidence              8999997554433322 344444333     244 2334333         34455555555555555554

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=95.10  E-value=0.11  Score=48.63  Aligned_cols=76  Identities=9%  Similarity=0.050  Sum_probs=52.8

Q ss_pred             ceEEEEEEecCCCcccCeee--CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCC---CcEEE
Q 018395           36 NIGAAKLALEKNGFALPHYC--DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKED---TELVV  110 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h--~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~---e~l~~  110 (356)
                      .+.+.++++.++.-...-..  ++.++++|++|++++..-.  +......|++||++++|+|..-.+.+.+.   +++.+
T Consensus       356 ~F~v~~~~l~~~~~~~~~~~~~~~~~Illv~~G~~~i~~~~--~~~~~~~l~~G~~~fIpa~~~~~i~~~~~~~~~~~~~  433 (440)
T d1pmia_         356 EFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITG--DDSTKQKIDTGYVFFVAPGSSIELTADSANQDQDFTT  433 (440)
T ss_dssp             SCEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEETT--CGGGCEEEETTCEEEECTTCCEEEEECSSCCSSCCEE
T ss_pred             ceEEEEEEECCCCCceeeecCCCCcEEEEEEcCEEEEEecC--CCccEEEeCCceEEEEcCCceEEEEeecCCCCCceEE
Confidence            46788889988664332222  6789999999999997522  11224799999999999998777766543   34444


Q ss_pred             EEE
Q 018395          111 LFL  113 (356)
Q Consensus       111 l~i  113 (356)
                      .-.
T Consensus       434 ~rA  436 (440)
T d1pmia_         434 YRA  436 (440)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.066  Score=49.67  Aligned_cols=207  Identities=12%  Similarity=-0.032  Sum_probs=104.4

Q ss_pred             ee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEEeeCC-CCCCCCceeEEeec
Q 018395           54 YC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFLGDTS-KGHKAGEFTNFFLT  131 (356)
Q Consensus        54 ~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i~~~~-~~~~pg~~~~f~la  131 (356)
                      ++ +++|++||.+|++++.-  +-|   ...+++||.++||+|+.+.+.=.+  +.+.+.+-..+ ++.-|..    =.-
T Consensus       147 ~NADGDeLi~~~~Gsg~l~T--efG---~L~v~pGDyvVIPRG~~frv~~~~--~~r~yiiE~~g~~~~lPe~----Gpi  215 (439)
T d1eyba_         147 YNSDGDFLIVPQKGNLLIYT--EFG---KMLVQPNEICVIQRGMRFSIDVFE--ETRGYILEVYGVHFELPDL----GPI  215 (439)
T ss_dssp             EESSEEEEEEEEESCEEEEE--TTE---EEEECTTEEEEECTTCCEEEECSS--SEEEEEEEEESCCEECCCC----GGG
T ss_pred             EcCCCCEEEEEEeCcEEEEE--eee---EEEecCCcEEEecCceEEEEecCC--CceEEEEeecCceeecCcc----ccc
Confidence            56 99999999999999964  223   379999999999999998876544  34444433221 1111210    000


Q ss_pred             ccccccccCcHHHHHhhccCCHHHHHHhhcccCCceEEEcCCCCcC----CCCC-----cccCCCceeeccCCCCCcc--
Q 018395          132 GANGIFTGFSTEFVSRAWDLDENTVKTLVGKQTGKGIVKLDANAKL----PEPK-----KEHRDGMAFNCEEAPLDVD--  200 (356)
Q Consensus       132 g~~s~l~~~~~~vl~~af~~~~~~~~~l~~~q~~~~iv~~~~~~~~----~~p~-----~~~~~~~~~~l~~~~~~~~--  200 (356)
                      |.++.+.  +++     |.++....+.......-.+++|.......    ..|-     ...--+++|||..=.|...  
T Consensus       216 g~~~l~~--pRD-----f~~P~a~~ed~~~~~~~~v~~K~~g~l~~~~~~hsPfDVVgWhG~~~Pykynl~dF~pI~sv~  288 (439)
T d1eyba_         216 GANGLAN--PRD-----FLIPIAWYEDRQVPGGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYKYNLKNFMVINSVA  288 (439)
T ss_dssp             TTSCBSC--GGG-----EEEECCCCCCCEEEEEEEEEEEETTEEEEEEEEECSCCEEEEEESCCCEEEEGGGCBCCCCSS
T ss_pred             ccccccC--hHH-----hcccccccccccCCCcEEEEEEECCEEEEEEecCCCceEEeecCcceeEEEehHhceeccccc
Confidence            1111111  111     11111000000000011244444332110    1232     1223567888885444210  


Q ss_pred             ----cCCCcEEEEeCCCCCCCccccCce--eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEec
Q 018395          201 ----IKNGGRVVLLNTKNLPLVGEVGCG--ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVK  274 (356)
Q Consensus       201 ----~~~gG~~~~~~~~~~p~l~~l~~s--~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~  274 (356)
                          .+.--.+.++.+ ..|...-.+.-  --|....+++++.|.+|.|-.+|.++.+.|.-...          ...+.
T Consensus       289 ~dH~pPsihtvfta~s-~~~G~~v~dFvifPprw~~~~~tfrpPyyHrNv~sE~m~~i~G~y~ar----------~~gf~  357 (439)
T d1eyba_         289 FDHADPSIFTVLTAKS-VRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAK----------QGGFL  357 (439)
T ss_dssp             SSCCCGGGGEEEEEEC-SSTTCEEEEEEEECSEEECCSSSCCSCCCBCCSCEEEEEECCC------------------CC
T ss_pred             cccCCCcceeEEecCC-CCCCceeEEEEEeCCcccccCCcccCCcccccccceeeeEeecCcccc----------cCCcc
Confidence                111122333322 22322110100  11234457999999999997789888888853211          12478


Q ss_pred             CCcEEEEcCCcEEEE
Q 018395          275 AGNLFIVPRFYVVSK  289 (356)
Q Consensus       275 ~Gdv~vvP~g~~h~~  289 (356)
                      +|.+-.=|.|.+|=-
T Consensus       358 pGg~SlHp~g~pHGP  372 (439)
T d1eyba_         358 PGGGSLHSTMTPHGP  372 (439)
T ss_dssp             TTCEEEECTTCCBCC
T ss_pred             CCeEEecCCCCCCCC
Confidence            999999999999863

>d1yuda1 b.82.1.16 (A:1-158) Hypothetical protein SO0799 {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein SO0799
species: Shewanella oneidensis [TaxId: 70863]

Probab=94.42  E-value=0.87  Score=36.13  Aligned_cols=132  Identities=17%  Similarity=0.231  Sum_probs=79.8

Q ss_pred             CCCcEEEEeCCCCCCC-ccccCceeEEEEecCCCeecccccccCCeeEEEEEece-EEEEEEccCCceEE---EEEecCC
Q 018395          202 KNGGRVVLLNTKNLPL-VGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGS-GRAQIVGPDGKRVL---ETTVKAG  276 (356)
Q Consensus       202 ~~gG~~~~~~~~~~p~-l~~l~~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~-~~~~iv~~~g~~~~---~~~l~~G  276 (356)
                      +.||+.++.-..+-.. -..-.++.-..-|.+|...  |||...++|+-+-..|. .++-+++++|+-.-   -.++..|
T Consensus        17 PEGG~fret~rs~~~~~~~R~~~T~IY~LL~~~~~S--~~Hrv~sdEiw~~~~G~pL~l~~~~~~g~~~~~~lG~d~~~g   94 (158)
T d1yuda1          17 VEGGFYRSSYRSETAFDPSRQLWSSIYFLLRTGEVS--HFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAG   94 (158)
T ss_dssp             TTSSEEEEEEECSSBSSSSSBSCEEEEEEEETTCCE--EEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTT
T ss_pred             CCCceEEEEEeCCCCCCCCCcceEEEEEEecCCCCC--ceEEecCCeEEEEecCCCEEEEEecCCCCeEEeeeccCcCcC
Confidence            3466666654433211 1112245555667888765  68877799999999996 78888999985311   1146678


Q ss_pred             cE--EEEcCCcEEEEeeCCCCeEEEEEEcCCCCceeccccccccccCCCHHHHHHHcCCCHHHHHHHH
Q 018395          277 NL--FIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFR  342 (356)
Q Consensus       277 dv--~vvP~g~~h~~~~~~~~~~~~~~~~~~~p~~~~laG~~s~l~~~p~~vl~~af~~~~~~~~~l~  342 (356)
                      +.  ++||+|.+..-.-..++..+++..-+.  ++.+-     =+.-.+.+-|.+.|---.+.+++|-
T Consensus        95 e~~q~vVp~g~w~~a~~~~g~~sLvsctVaP--GFdf~-----Dfel~~~~~L~~~~P~~~~~I~~lt  155 (158)
T d1yuda1          95 ERPQFLVPKGCIFGSAMNQDGFSLVGCMVSP--GFTFD-----DFELFSQEALLAMYPQHKAVVQKLS  155 (158)
T ss_dssp             EESCEEECTTCEEEEEESSSSEEEEEEEESS--CCCGG-----GCCBCBHHHHHHSCCTTHHHHTTSC
T ss_pred             ceeEEEEcCCCEEEEEEcCCCcEEEEEEEcC--Cccch-----hccccCHHHHHHHCchhHHHHHHHc
Confidence            87  899999765432234456666654333  33221     1222356677777766667776653

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=94.27  E-value=0.37  Score=39.41  Aligned_cols=81  Identities=6%  Similarity=-0.042  Sum_probs=61.4

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccC--Cc----eEEEEEecCCcEEEEcCC-cEEEEee-C-C
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPD--GK----RVLETTVKAGNLFIVPRF-YVVSKIA-D-P  293 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~--g~----~~~~~~l~~Gdv~vvP~g-~~h~~~~-~-~  293 (356)
                      ..+..+...||...++|=|++ ++.++.|++|+.+.++....  +.    ..-...+++|++.++... -+|-+.| + +
T Consensus        66 fel~li~W~pGq~tpiHDH~~-~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~~  144 (186)
T d3elna1          66 FNLMILCWGEGHGSSIHDHTD-SHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHT  144 (186)
T ss_dssp             CEEEEEEECTTCBCCEECCTT-CEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSS
T ss_pred             eEEEEEEccCCCcCCCccCCC-CcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCCC
Confidence            667778899999999999998 99999999999999998632  21    122458999999988655 4898844 5 4


Q ss_pred             CCeEEEEEEcC
Q 018395          294 DGLAWFSIITT  304 (356)
Q Consensus       294 ~~~~~~~~~~~  304 (356)
                      +.+..+=+...
T Consensus       145 ~~avsLHvYsp  155 (186)
T d3elna1         145 EPAVSLHLYSP  155 (186)
T ss_dssp             CCEEEEEEEES
T ss_pred             CCeEEEEEeCC
Confidence            56666655543

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.27  Score=42.94  Aligned_cols=98  Identities=10%  Similarity=0.018  Sum_probs=69.6

Q ss_pred             ceeeCCCeEEEEeC----CCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcC
Q 018395           12 QVYGGNGGSYHAWC----PNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKK   86 (356)
Q Consensus        12 ~~~~~~~G~i~~~~----~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~   86 (356)
                      |.+..++..++.+.    ..+-|......+.+..+.|++|+....-.. ...-++||++|++.+.-     ......++.
T Consensus       138 P~~~~~~~~~~vi~G~~~g~~~pi~~~s~~~~~~i~l~~g~~~~~~l~~~~~~~lyvi~G~~~v~g-----~~~~~~l~~  212 (288)
T d1j1la_         138 PKPSKDGVTVAVISGEALGIKSKVYTRTPTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGP-----DDAQQKIEP  212 (288)
T ss_dssp             CCCEETTEEEEEEESEETTEECCCCCSSCEEEEEEEECTTCEEEEECCTTCEEEEEEEESCEEESC-----TTSCEEECT
T ss_pred             cccccccceEEEEeccccccccccccCCchhhhhhhcccCceEEEecCCCCeEEEEEEEeeEEecC-----cccceeecC
Confidence            34444566665432    222345455678899999999998765555 55678999999998841     112257899


Q ss_pred             CCEEEeCCCcEEEEEecCCCcEEEEEEe
Q 018395           87 GDGIALPFGVVTWWYNKEDTELVVLFLG  114 (356)
Q Consensus        87 GDv~~iP~G~~H~~~N~g~e~l~~l~i~  114 (356)
                      ++++++..|-.-.+.+.++++++++.+.
T Consensus       213 ~~~~~l~~gd~~~i~~~~~~~a~~LLl~  240 (288)
T d1j1la_         213 HHTAVLGEGDSVQVENKDPKRSHFVLIA  240 (288)
T ss_dssp             TEEEEECSCSEEEEECCSSSCEEEEEEE
T ss_pred             ceEEEEcCCCeEEEEeCCCCCCEEEEEE
Confidence            9999999998777888888888887654

>d1znpa1 b.82.1.16 (A:4-143) Hypothetical protein Atu3615 {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein Atu3615
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.92  E-value=0.98  Score=35.06  Aligned_cols=108  Identities=19%  Similarity=0.204  Sum_probs=69.6

Q ss_pred             CCCeEEEEeCCCCCCCcccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCe-EEEEEEcCCCceEEEE----EcCCC-
Q 018395           16 GNGGSYHAWCPNELPMLRQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGS-GVAGIVLPEKEEKVVA----IKKGD-   88 (356)
Q Consensus        16 ~~~G~i~~~~~~~~p~l~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~-~~~~vv~~~~~~~~~~----l~~GD-   88 (356)
                      .+||++++....+... ....++..+.-|.++.....|.. +++|+.+-..|. .++-++.+++..+...    +..|+ 
T Consensus        17 PEGG~f~et~rs~~~~-~R~~~T~IYyLL~~~~~s~~Hrv~~sDEiw~~~~G~pL~l~~~~~~g~~~~~~lG~~~~~ge~   95 (140)
T d1znpa1          17 PEGGFYHQTFRDKAGG-ERGHSTAIYYLLEKGVRSHWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILEGER   95 (140)
T ss_dssp             TTSSEEEEEEECSSST-TTCSCEEEEEEEESSCCEEEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTTTEE
T ss_pred             CCCceEEEEEECCCCC-CCcceEEEEEEcCCCCCCccccccCCCeEEEEcCCceEEEEEecCCCCEEEEEecCCcccCCc
Confidence            3889997653322222 23456777888899887655554 478988888888 7787777776544444    44666 


Q ss_pred             -EEEeCCCcEEEEEecCCCcEEEEEEeeCCCCCCCC-ceeEEeec
Q 018395           89 -GIALPFGVVTWWYNKEDTELVVLFLGDTSKGHKAG-EFTNFFLT  131 (356)
Q Consensus        89 -v~~iP~G~~H~~~N~g~e~l~~l~i~~~~~~~~pg-~~~~f~la  131 (356)
                       .++||+|+.+.....|+  ..++....     .|| +|++|-|+
T Consensus        96 ~q~vVp~g~W~aa~~~g~--~sLvsctV-----aPGF~f~dfel~  133 (140)
T d1znpa1          96 PQVIVPANCWQSAESLGD--FTLVGCTV-----SPGFAFSSFVMA  133 (140)
T ss_dssp             SEEEECTTCEEEEEESSS--EEEEEEEE-----SSCCCGGGEEEC
T ss_pred             eeEEECCCeEEeeeECCC--eEEEEeEe-----cCCccCccCEeC
Confidence             78999999888876654  34443322     255 34566664

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.46  E-value=0.28  Score=45.37  Aligned_cols=87  Identities=13%  Similarity=0.027  Sum_probs=55.0

Q ss_pred             CcEEEEeCCCCCCCccccCceeEEEEecCCCeec-ccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEc
Q 018395          204 GGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCS-PGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVP  282 (356)
Q Consensus       204 gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~-PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP  282 (356)
                      -|..+.+..- =|.++. ||++. +....-+|-- -..|.+ +.|++||-+|++++.  +..|    .-.+++||.+|||
T Consensus       113 ~Gl~t~~g~G-d~~~~~-G~aih-iy~~n~sM~~~~f~NAD-GDeLi~~~~Gsg~l~--TefG----~L~v~pGDyvVIP  182 (439)
T d1eyba_         113 SGLHTLCGAG-DIKSNN-GLAIH-IFLCNTSMENRCFYNSD-GDFLIVPQKGNLLIY--TEFG----KMLVQPNEICVIQ  182 (439)
T ss_dssp             TTEEEEEEES-CGGGTC-CEEEE-EEEECSCCCSEEEEESS-EEEEEEEEESCEEEE--ETTE----EEEECTTEEEEEC
T ss_pred             hceeeecccC-Cccccc-CcEEE-EEecCCCCccceeEcCC-CCEEEEEEeCcEEEE--Eeee----EEEecCCcEEEec
Confidence            3444443332 243332 44433 3444455643 357888 999999999999775  4455    2369999999999


Q ss_pred             CCcEEEEeeCCCCeEEEEE
Q 018395          283 RFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       283 ~g~~h~~~~~~~~~~~~~~  301 (356)
                      +|..+.+.- .+++..+.+
T Consensus       183 RG~~frv~~-~~~~r~yii  200 (439)
T d1eyba_         183 RGMRFSIDV-FEETRGYIL  200 (439)
T ss_dssp             TTCCEEEEC-SSSEEEEEE
T ss_pred             CceEEEEec-CCCceEEEE
Confidence            999887643 345554444

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=92.00  E-value=0.31  Score=40.08  Aligned_cols=78  Identities=13%  Similarity=-0.058  Sum_probs=56.0

Q ss_pred             ceeEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCC--ceE---EEEEecCCcEEEE--cCCcEEEE-eeC-C
Q 018395          223 CGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDG--KRV---LETTVKAGNLFIV--PRFYVVSK-IAD-P  293 (356)
Q Consensus       223 ~s~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g--~~~---~~~~l~~Gdv~vv--P~g~~h~~-~~~-~  293 (356)
                      +.+..+...||.-.+||=|..  +.+..|++|+...++....+  ..+   -...+++||+.++  +.|.+|.+ |++ +
T Consensus        68 f~i~~i~W~pG~~tpiHdH~~--w~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~~~IH~v~N~~~~  145 (192)
T d2gm6a1          68 FSIVSFVWGPGQRTPIHDHTV--WGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDD  145 (192)
T ss_dssp             CEEEEEEECTTCBCCSBCCSS--CEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSS
T ss_pred             EEEEEEecCCCCCCCCCCCCC--ceEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCceeEEecCCCC
Confidence            667788899999999999964  57788999999888886533  211   1347999999777  45789999 444 3


Q ss_pred             CCeEEEEEE
Q 018395          294 DGLAWFSII  302 (356)
Q Consensus       294 ~~~~~~~~~  302 (356)
                      +.+.-|=++
T Consensus       146 ~~avSLHvY  154 (192)
T d2gm6a1         146 RVSISIHVY  154 (192)
T ss_dssp             SCEEEEEEE
T ss_pred             ccEEEEEEC
Confidence            444434333

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=91.59  E-value=0.32  Score=36.20  Aligned_cols=71  Identities=8%  Similarity=0.035  Sum_probs=47.1

Q ss_pred             CCCeecccc--ccc-CCeeEEEEEeceEEEEEE-ccCCce-EEEEEecCCcEEEEcCCcEEEEeeCCCCeEE-EEEE
Q 018395          232 GKAMCSPGF--SCD-SALQVTYIVRGSGRAQIV-GPDGKR-VLETTVKAGNLFIVPRFYVVSKIADPDGLAW-FSII  302 (356)
Q Consensus       232 ~g~~~~PH~--h~~-~A~ei~~v~~G~~~~~iv-~~~g~~-~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~-~~~~  302 (356)
                      |-++...|.  +++ +...-+-|++|+.+.-.+ +..+.. .-.-.+++|+.-++|..++|.+..-+++++| +.|+
T Consensus        23 P~~ll~~H~~~nTK~Gvwg~l~Vl~G~L~y~~~~d~~~~~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsdD~~f~v~Fy   99 (109)
T d3bb6a1          23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFF   99 (109)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEEEEEE
T ss_pred             hHHHHhhccCCCcCCcEEEEEEEEEEEEEEEEeccCCCCCcceEEEecCCCceeeCCCccEEeEECCCCEEEEEEEE
Confidence            445677784  444 134557899999987544 433211 1123588999999999999999876666665 5565

>d1znpa1 b.82.1.16 (A:4-143) Hypothetical protein Atu3615 {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein Atu3615
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.76  E-value=1.2  Score=34.57  Aligned_cols=97  Identities=13%  Similarity=0.008  Sum_probs=60.8

Q ss_pred             CCCcEEEEeCCCCCCCccccCceeEEEEecCCCeeccccccc-CCeeEEEEEece-EEEEEEccCCce---EEEEEecCC
Q 018395          202 KNGGRVVLLNTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCD-SALQVTYIVRGS-GRAQIVGPDGKR---VLETTVKAG  276 (356)
Q Consensus       202 ~~gG~~~~~~~~~~p~l~~l~~s~~~v~l~~g~~~~PH~h~~-~A~ei~~v~~G~-~~~~iv~~~g~~---~~~~~l~~G  276 (356)
                      +.||+.++....+...-+. .+++-..-|.++...  |||.- .+.|+-+-..|. .++-++.++|.-   ++-..+..|
T Consensus        17 PEGG~f~et~rs~~~~~R~-~~T~IYyLL~~~~~s--~~Hrv~~sDEiw~~~~G~pL~l~~~~~~g~~~~~~lG~~~~~g   93 (140)
T d1znpa1          17 PEGGFYHQTFRDKAGGERG-HSTAIYYLLEKGVRS--HWHRVTDAVEVWHYYAGAPIALHLSQDGREVQTFTLGPAILEG   93 (140)
T ss_dssp             TTSSEEEEEEECSSSTTTC-SCEEEEEEEESSCCE--EEEEETTSCEEEEEEEESCEEEEEESSSSCCEEEEESSCTTTT
T ss_pred             CCCceEEEEEECCCCCCCc-ceEEEEEEcCCCCCC--ccccccCCCeEEEEcCCceEEEEEecCCCCEEEEEecCCcccC
Confidence            4577776665444333222 244455557888765  77752 277999999996 888888888742   111256678


Q ss_pred             c--EEEEcCCcEEEEeeCCCCeEEEEEE
Q 018395          277 N--LFIVPRFYVVSKIADPDGLAWFSII  302 (356)
Q Consensus       277 d--v~vvP~g~~h~~~~~~~~~~~~~~~  302 (356)
                      +  .++||+|.+..-... ....+++..
T Consensus        94 e~~q~vVp~g~W~aa~~~-g~~sLvsct  120 (140)
T d1znpa1          94 ERPQVIVPANCWQSAESL-GDFTLVGCT  120 (140)
T ss_dssp             EESEEEECTTCEEEEEES-SSEEEEEEE
T ss_pred             CceeEEECCCeEEeeeEC-CCeEEEEeE
Confidence            7  679999998775432 345555443

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=88.96  E-value=2.3  Score=30.35  Aligned_cols=69  Identities=9%  Similarity=-0.030  Sum_probs=50.8

Q ss_pred             eEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEEEE
Q 018395           37 IGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVLFL  113 (356)
Q Consensus        37 ~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l~i  113 (356)
                      -......|.||.   -++. .+.|++-|++|+..+.+  |+..+. ..+++|+.|-+|++....+.-.  +....+|-
T Consensus        22 ~~kTlGVm~pGe---Y~F~T~~~E~MeivsG~l~V~l--pg~~ew-~~~~~G~sF~Vpans~F~ikv~--~~~~Y~C~   91 (93)
T d2oyza1          22 QDVSVGVMLPGE---YTFGTQAPERMTVVKGALVVKR--VGEADW-TTYSSGESFDVEGNSSFELQVK--DATAYLCE   91 (93)
T ss_dssp             EEEEEEEECSEE---EEEEESSCEEEEEEESEEEEEE--TTCSSC-EEEETTCEEEECSSEEEEEEES--SCEEEEEE
T ss_pred             CeeEEEEEeccE---EEEcCCCCEEEEEEeeEEEEEC--CCCccc-EEeCCCCeEEECCCCEEEEEEC--cceeeEEE
Confidence            344455667774   4556 89999999999999976  332233 6899999999999999888764  34556663

>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Type II Proline 3-hydroxylase (proline oxidase)
domain: Type II Proline 3-hydroxylase (proline oxidase)
species: Streptomyces sp. [TaxId: 1931]

Probab=88.46  E-value=0.28  Score=43.17  Aligned_cols=68  Identities=22%  Similarity=0.191  Sum_probs=47.4

Q ss_pred             CceEEEEEEecCCCcccCeee-CC--------CEEEEEEeCe--EEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEec
Q 018395           35 GNIGAAKLALEKNGFALPHYC-DS--------ARVAYVLQGS--GVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNK  103 (356)
Q Consensus        35 ~~~~~~~~~l~Pg~~~~pH~h-~a--------~e~~yVl~G~--~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~  103 (356)
                      ...++.++.|.||+.+.||.= ..        -.+-+.+...  +.+.+   ++  .+..+++|.++++-.+.+|+..|.
T Consensus        89 ~~~r~~rirL~pGg~I~pH~D~~~~~~~~~~~~RiHIPL~Tn~~~~f~v---~~--~~~~m~~Ge~w~~D~~~~H~v~N~  163 (290)
T d1e5ra_          89 THLQMARSRNLKNAIVIPHRDFVELDREVDRYFRTFMVLEDSPLAFHSN---ED--TVIHMRPGEIWFLDAATVHSAVNF  163 (290)
T ss_dssp             SSEEEEEEEEEESEEEEEECCC--------CBCCEEEECSCCTTEEEEE---TT--EEECCCTTEEEECCTTSCEEEEES
T ss_pred             ceeeeeeeeecCCcEecCCcCCccccccCCceEEEEEEeecCCceEEEE---CC--EEEECCCCeEEEEcCCCeEEEECC
Confidence            456788899999999999852 10        1233333322  32222   12  358999999999999999999999


Q ss_pred             CCCc
Q 018395          104 EDTE  107 (356)
Q Consensus       104 g~e~  107 (356)
                      |+++
T Consensus       164 sd~d  167 (290)
T d1e5ra_         164 SEIS  167 (290)
T ss_dssp             SSSC
T ss_pred             CCCc
Confidence            8874

>d1xe7a_ b.82.1.16 (A:) Hypothetical protein YML079W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YML079-like
domain: Hypothetical protein YML079W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.40  E-value=2.4  Score=34.58  Aligned_cols=67  Identities=18%  Similarity=0.184  Sum_probs=47.7

Q ss_pred             ceEEEEEEecCCC-cccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEE----EEcCCC--EEEeCCCcEEEEEe
Q 018395           36 NIGAAKLALEKNG-FALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVV----AIKKGD--GIALPFGVVTWWYN  102 (356)
Q Consensus        36 ~~~~~~~~l~Pg~-~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~----~l~~GD--v~~iP~G~~H~~~N  102 (356)
                      .++..+.-|.+.+ +...|-.+++|+.|-..|...+-++.+++..+..    ++..|+  .++||+|+.....-
T Consensus        70 ~~TsIYfLLt~~~~~S~~Hr~~sde~w~~~~G~~l~~~i~~dG~~~~~~LG~d~~~Ge~~Q~vVp~G~W~aa~~  143 (194)
T d1xe7a_          70 QSTLIYYLLTPDSPIGKFHKNINRIIHILQRGKGQYVLVYPDGQVKSFKVGFDYKNGEVSQWVVPGGVFKASFL  143 (194)
T ss_dssp             SCEEEEEEEBTTBCEEEEEEESSCEEEEEEEECEEEEEECTTSCEEEEEESSCGGGTCBSEEEECTTCEEEEEE
T ss_pred             cceEEEEEEccCCCccceEEcCCcEEEEEecCCcEEEEEccCCCeEEEEeccCcccCceeEEEecCCEEEEeee
Confidence            4566777777654 4444444999999999999988888888765544    344565  46799998666553

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=88.16  E-value=0.42  Score=42.31  Aligned_cols=59  Identities=24%  Similarity=0.298  Sum_probs=41.7

Q ss_pred             ceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEE
Q 018395           36 NIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWY  101 (356)
Q Consensus        36 ~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~  101 (356)
                      .+++.++++......  ....+..+++|++|++++..   ++  .+..|++||+++||++...+..
T Consensus       246 ~F~~~~~~~~~~~~~--~~~~~~~il~vi~G~~~i~~---~~--~~~~l~~G~~~~ipa~~~~~~i  304 (315)
T d1qwra_         246 YFSVYKWDINGEAEM--AQDESFLICSVIEGSGLLKY---ED--KTCPLKKGDHFILPAQMPDFTI  304 (315)
T ss_dssp             SCEEEEEEEEEEEEE--CCCSSCEEEEEEEEEEEEEE---TT--EEEEEETTCEEEECTTCCCEEE
T ss_pred             cEEEEEEEecCcEEe--ccCCCcEEEEEEeCeEEEEE---CC--EEEEEecCcEEEEECCCCCEEE
Confidence            467777777632211  11256799999999998864   22  3478999999999999866544

>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Escherichia coli [TaxId: 562]

Probab=86.99  E-value=8.2  Score=32.90  Aligned_cols=73  Identities=12%  Similarity=0.198  Sum_probs=46.4

Q ss_pred             ceeEEEEecCCCe---ecccccccCCeeEEEEEe---ceEEEEEEc-cCCceEEEEEecCCcEEEEcCCcEEEEeeCCCC
Q 018395          223 CGADLVRLDGKAM---CSPGFSCDSALQVTYIVR---GSGRAQIVG-PDGKRVLETTVKAGNLFIVPRFYVVSKIADPDG  295 (356)
Q Consensus       223 ~s~~~v~l~~g~~---~~PH~h~~~A~ei~~v~~---G~~~~~iv~-~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~  295 (356)
                      +-|..-.|.|||.   .+||.|-+ ..|..|--+   +...+.+.. |+..|  .-.++-+|+++.|.-++|. =+|..+
T Consensus       177 LlmG~tvl~PGg~WSSyPpHkHDR-rmEeyyYF~l~~~~~Vfh~mGep~etr--hivv~neqaVisP~wsih~-g~gt~~  252 (277)
T d1xrua1         177 LSMGLTELAPGNLWNTMPCHTHER-RMEVYFYFNMDDDACVFHMMGQPQETR--HIVMHNEQAVISPSWSIHS-GVGTKA  252 (277)
T ss_dssp             CEEEEEEECTTCCEESCSEEECTT-EEEEEEEESCCTTCCEEEEEEETTEEE--EEEECSSEEEEECTTCEEE-EEESSC
T ss_pred             EEEEEEEEcCCCccCCCCCccCCC-CcceEEEEEcCCCceEEEecCCCCcee--EEEEECCcEEECCCCcccC-CCCCcc
Confidence            4566778899986   38999998 677666544   222233333 33222  2368899999999888888 345554


Q ss_pred             eEEE
Q 018395          296 LAWF  299 (356)
Q Consensus       296 ~~~~  299 (356)
                      ..|+
T Consensus       253 y~fi  256 (277)
T d1xrua1         253 YTFI  256 (277)
T ss_dssp             CEEE
T ss_pred             eEEE
Confidence            3333

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.24  E-value=0.66  Score=34.90  Aligned_cols=52  Identities=19%  Similarity=0.289  Sum_probs=38.7

Q ss_pred             EEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395          226 DLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF  279 (356)
Q Consensus       226 ~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~  279 (356)
                      ...++.+|-..-- -.-. +..+.++++|++++...+++|+...-..+.+||+|
T Consensus        13 ~~~~~~~g~~i~~-~g~~-~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~   64 (134)
T d2oz6a2          13 HRRRYTAKSTIIY-AGDR-CETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF   64 (134)
T ss_dssp             EEEEECTTCEEEC-TTSB-CCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             EEEEECCCCEEEe-CCCc-CCEEEEEEEcccceeeeecccccceeeeccCCCcc
Confidence            3445566654421 1122 66899999999999999999988777789999998

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.23  E-value=0.82  Score=33.98  Aligned_cols=51  Identities=22%  Similarity=0.318  Sum_probs=38.4

Q ss_pred             EEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395          227 LVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF  279 (356)
Q Consensus       227 ~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~  279 (356)
                      .-.+++|.+.- +-.-. +..+.+|++|.+++...+++|+...-..+.+||+|
T Consensus        15 ~~~~~~g~~i~-~~g~~-~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~   65 (132)
T d1i5za2          15 IHKYPSKSTLI-HQGEK-AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFI   65 (132)
T ss_dssp             EEEECTTCEEE-CTTSB-CCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEE
T ss_pred             EEEECcCCEEE-cCCCC-CCEEEEEEEccceeeeccccchhhhhhhhCccccc
Confidence            34556665543 22223 67899999999999999999988777789999987

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=85.12  E-value=1.6  Score=36.34  Aligned_cols=70  Identities=16%  Similarity=0.136  Sum_probs=47.3

Q ss_pred             ccCceEEEEEEecCCCcccCeee-CCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEecCCCcEEEE
Q 018395           33 RQGNIGAAKLALEKNGFALPHYC-DSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYNKEDTELVVL  111 (356)
Q Consensus        33 ~~~~~~~~~~~l~Pg~~~~pH~h-~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~e~l~~l  111 (356)
                      ....+.+..+.+.+|+....-.. ...-++||++|++.+     ++    ..|.+||.+++-.+-.-.+...  ++.+++
T Consensus       156 ~~~~~~l~~~~l~~g~~~~~~l~~~~~~~lyvi~G~l~i-----~g----~~l~~gd~~~l~~~~~l~i~A~--~~a~~L  224 (231)
T d1tq5a1         156 VHQDMELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTI-----NG----VKASTSDGLAIWDEQAISIHAD--SDSEVL  224 (231)
T ss_dssp             CSSSCEEEEEEECTTCEEEECCCTTCEEEEEEEESEEEE-----TT----EEEETTCEEEEESCSCEEEEES--SSEEEE
T ss_pred             cccccEEEEEEecCCceEEEcccCCccEEEEEEeeEEEE-----CC----EEccCCCeEEECCCCeEEEEEC--CCCEEE
Confidence            34577788999999887654333 334689999999887     23    4789999988766655445443  234555


Q ss_pred             EE
Q 018395          112 FL  113 (356)
Q Consensus       112 ~i  113 (356)
                      .+
T Consensus       225 L~  226 (231)
T d1tq5a1         225 LF  226 (231)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.13  E-value=1.2  Score=39.01  Aligned_cols=61  Identities=13%  Similarity=0.177  Sum_probs=43.0

Q ss_pred             cCceEEEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeCCCcEEEEEe
Q 018395           34 QGNIGAAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALPFGVVTWWYN  102 (356)
Q Consensus        34 ~~~~~~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP~G~~H~~~N  102 (356)
                      +..+.+.++++......  .......+++|++|++.+.    ++ + +..|++||.+++|+....+...
T Consensus       226 ~~~F~~~~~~~~~~~~~--~~~~~~~il~~~~G~~~i~----~~-~-~~~l~~G~s~~iPA~~~~~~i~  286 (299)
T d1zx5a1         226 TENFGLEVVDVTGTAEI--KTGGVMNILYAAEGYFILR----GK-E-TADLHRGYSCLVPASTDSFTVE  286 (299)
T ss_dssp             CSSEEEEEEEEEEEEEE--ECCSBCEEEEEEESCEEEE----SS-S-EEEECTTCEEEECTTCCEEEEE
T ss_pred             ccceEEEEEEecCcEEe--ccCCceEEEEEeccEEEEe----CC-C-EEEEcCCcEEEEecCCccEEEE
Confidence            34577777777643222  1225678999999999763    22 2 3789999999999998776654

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=84.05  E-value=1.9  Score=32.46  Aligned_cols=53  Identities=13%  Similarity=0.101  Sum_probs=40.6

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF  279 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~  279 (356)
                      +...+..+|-+.--.= -. +..+.+|++|++++...+++|+..+-..+++||++
T Consensus        24 ~~~~~y~kg~~i~~~g-~~-~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~   76 (139)
T d3e5ua2          24 GLIRDFAKGSAVIMPG-EE-ITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLI   76 (139)
T ss_dssp             SEEEEECTTCEEECTT-CC-CCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             CEEEEECCCCEEEeCC-CC-CCEEEEEEeccceEEEeeccccccceeecccccee
Confidence            4455667777664222 23 56899999999999999999987777789999975

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.66  E-value=1.3  Score=33.13  Aligned_cols=50  Identities=12%  Similarity=0.077  Sum_probs=36.9

Q ss_pred             EEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceE-EEEEcCCCEE
Q 018395           41 KLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEK-VVAIKKGDGI   90 (356)
Q Consensus        41 ~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~-~~~l~~GDv~   90 (356)
                      ..++++|..+---=-.++.+++|++|+..+...+++|++. ...+.+||++
T Consensus        14 ~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~   64 (134)
T d2oz6a2          14 RRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFF   64 (134)
T ss_dssp             EEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             EEEECCCCEEEeCCCcCCEEEEEEEcccceeeeecccccceeeeccCCCcc
Confidence            4566666654322226789999999999999888877654 4578999998

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.60  E-value=1.3  Score=32.69  Aligned_cols=50  Identities=18%  Similarity=0.155  Sum_probs=36.7

Q ss_pred             EEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceE-EEEEcCCCEE
Q 018395           41 KLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEK-VVAIKKGDGI   90 (356)
Q Consensus        41 ~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~-~~~l~~GDv~   90 (356)
                      ...+++|..+--.--..+.+++|++|...+...+++|++. ...+++||.+
T Consensus        15 ~~~~~~g~~i~~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~   65 (132)
T d1i5za2          15 IHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFI   65 (132)
T ss_dssp             EEEECTTCEEECTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEE
T ss_pred             EEEECcCCEEEcCCCCCCEEEEEEEccceeeeccccchhhhhhhhCccccc
Confidence            4566777654422227889999999999999888877654 4667889887

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.30  E-value=2  Score=31.47  Aligned_cols=53  Identities=11%  Similarity=0.158  Sum_probs=41.3

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF  279 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~  279 (356)
                      +....+.+|.+.--.= -. +..+.||++|.+++...+.+|+...-..+.+|++|
T Consensus        10 ~~~~~~~kg~~l~~~g-~~-~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~   62 (129)
T d1o5la1          10 GKVIVFRKGEIVKHQD-DP-IEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQII   62 (129)
T ss_dssp             SEEEEECTTCEEECTT-CB-CCEEEEEEESCEEEEEECTTSCEEEEEEECSSEES
T ss_pred             CEEEEECCCCEEEECC-Cc-CcEEEEEeccccEEEEeecccccchhhhccccccc
Confidence            4556778887664222 23 67899999999999999999988777789999886

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=82.85  E-value=1.4  Score=32.93  Aligned_cols=54  Identities=19%  Similarity=0.134  Sum_probs=37.8

Q ss_pred             EEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEEEeC
Q 018395           40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGIALP   93 (356)
Q Consensus        40 ~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~~iP   93 (356)
                      ...+.++|..+.--=-..+.+++|++|..++....+++......+.+||++-.+
T Consensus        23 ~~~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~   76 (132)
T d1ft9a2          23 RSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMH   76 (132)
T ss_dssp             EEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESC
T ss_pred             EEEEecCCcEEECCCCCCCEEEEEEeCeEeeeccccccceeecccccccccccc
Confidence            446667766553322268899999999999987665444446788999987544

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=82.38  E-value=2.2  Score=32.00  Aligned_cols=51  Identities=12%  Similarity=0.103  Sum_probs=38.5

Q ss_pred             EEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceE-EEEEcCCCEE
Q 018395           40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEK-VVAIKKGDGI   90 (356)
Q Consensus        40 ~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~-~~~l~~GDv~   90 (356)
                      ...+.++|..+.-.--..+.+++|++|.+++....+++++. ...+++||.+
T Consensus        25 ~~~~y~kg~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~   76 (139)
T d3e5ua2          25 LIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLI   76 (139)
T ss_dssp             EEEEECTTCEEECTTCCCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             EEEEECCCCEEEeCCCCCCEEEEEEeccceEEEeeccccccceeecccccee
Confidence            45667777655444347889999999999998888877654 4678999976

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=82.12  E-value=4.7  Score=29.53  Aligned_cols=60  Identities=17%  Similarity=0.052  Sum_probs=42.9

Q ss_pred             CCCcccCee--e-CCCE--EEEEEeCeEEEEEEcCCC---ceEEEEEcCCCEEEeCCCcEEEEEecCC
Q 018395           46 KNGFALPHY--C-DSAR--VAYVLQGSGVAGIVLPEK---EEKVVAIKKGDGIALPFGVVTWWYNKED  105 (356)
Q Consensus        46 Pg~~~~pH~--h-~a~e--~~yVl~G~~~~~vv~~~~---~~~~~~l~~GDv~~iP~G~~H~~~N~g~  105 (356)
                      |-++...|.  + .+..  -+-|++|+.+.....+++   .+....+++|+.-++|+...|.+.-.++
T Consensus        23 P~~ll~~H~~~nTK~Gvwg~l~Vl~G~L~y~~~~d~~~~~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsd   90 (109)
T d3bb6a1          23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTD   90 (109)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESST
T ss_pred             hHHHHhhccCCCcCCcEEEEEEEEEEEEEEEEeccCCCCCcceEEEecCCCceeeCCCccEEeEECCC
Confidence            445677774  3 4444  456999999875444332   2345789999999999999999987554

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=82.09  E-value=3.7  Score=29.43  Aligned_cols=67  Identities=10%  Similarity=0.135  Sum_probs=44.3

Q ss_pred             Ceeccccccc-CCeeEEEEEeceEEE-EEEccCCce-EEEEEecCCcEEEEcCCcEEEEeeCCCCeEEE-EEE
Q 018395          234 AMCSPGFSCD-SALQVTYIVRGSGRA-QIVGPDGKR-VLETTVKAGNLFIVPRFYVVSKIADPDGLAWF-SII  302 (356)
Q Consensus       234 ~~~~PH~h~~-~A~ei~~v~~G~~~~-~iv~~~g~~-~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~-~~~  302 (356)
                      ++...|- ++ +...-+-|++|+++. ++.+.++.. ...-.+.+|+..++|..++|.+.. +++++|. .|+
T Consensus        23 ~ll~~Hn-TK~Gvwg~i~Vl~G~L~y~~~~d~~~~e~~~~~~~~~g~~~~~~Pq~wH~Ve~-sdD~~f~v~Fy   93 (96)
T d3dl3a1          23 ALLTHHN-TAVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIEL-SDDAQFNINFW   93 (96)
T ss_dssp             HHHSSBC-CCTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEE-CTTCEEEEEEE
T ss_pred             HHHhhcC-CCCceEEEEEEEEEEEEEEEeccCCCCcccEEEEecCCCcceeCCCccEEEEe-CCCeEEEEEEE
Confidence            3455553 44 234457899999987 555655421 223468899999999999999974 6666653 444

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.92  E-value=1.5  Score=32.90  Aligned_cols=52  Identities=6%  Similarity=-0.081  Sum_probs=38.6

Q ss_pred             EEEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceEEEEEcCCCEE
Q 018395           39 AAKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEKVVAIKKGDGI   90 (356)
Q Consensus        39 ~~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~~~~l~~GDv~   90 (356)
                      +...+++||..+.-.-..++.+++|++|...+..-..+.......+.+||.+
T Consensus        39 ~~~~~~~~g~~I~~~G~~~~~~y~I~~G~v~v~~~~~~~~~~~~~l~~g~~f   90 (136)
T d1cx4a1          39 MFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSF   90 (136)
T ss_dssp             CEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEEETTEEEEEEEEESSCEE
T ss_pred             eEEEEECCCCEEEECCCcchhhhhhhhheeEEeeccccceeeeeccCCcccc
Confidence            4678889998877655588999999999998854333333334678888887

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=81.71  E-value=0.93  Score=34.32  Aligned_cols=51  Identities=10%  Similarity=-0.071  Sum_probs=34.9

Q ss_pred             EEEEecCCCcccCeeeCCCEEEEEEeCeEEEEEEcCCCceE-EEEEcCCCEE
Q 018395           40 AKLALEKNGFALPHYCDSARVAYVLQGSGVAGIVLPEKEEK-VVAIKKGDGI   90 (356)
Q Consensus        40 ~~~~l~Pg~~~~pH~h~a~e~~yVl~G~~~~~vv~~~~~~~-~~~l~~GDv~   90 (356)
                      ...++++|......--.++.+++|++|.+.+...+++|++. ...+.+||++
T Consensus        25 ~~~~~~~g~~l~~~g~~~~~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~   76 (142)
T d2gaua2          25 QPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFF   76 (142)
T ss_dssp             EEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEE
T ss_pred             EEEEECCCCEEEeCCCccceEEEEEecceeeEeeccccceeeeecccccchh
Confidence            35677777766555557899999999999998877776554 3558899875

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=80.40  E-value=1.1  Score=34.06  Aligned_cols=53  Identities=8%  Similarity=0.096  Sum_probs=39.5

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLF  279 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~  279 (356)
                      .......+|-..- +..-. ++.+.+|++|.+++...+++|+...-..+.+||+|
T Consensus        31 ~~~~~~~~g~~i~-~~g~~-~~~iy~i~~G~v~v~~~~~~g~~~~~~~~~~g~~f   83 (147)
T d1zyba2          31 LHFIKHKAGETII-KSGNP-CTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI   83 (147)
T ss_dssp             CEEEEECTTCEEE-CTTSB-CCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred             eEEEEECCCCEEE-eccCC-ccEEEEEecceEEEEEEcCCCCEEEEEEcCCCCEe
Confidence            3445667776652 22223 67899999999999999999877666788999976

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=80.36  E-value=4.5  Score=28.76  Aligned_cols=68  Identities=19%  Similarity=0.124  Sum_probs=51.5

Q ss_pred             eEEEEecCCCeecccccccCCeeEEEEEeceEEEEEEccCCceEEEEEecCCcEEEEcCCcEEEEeeCCCCeEEEEE
Q 018395          225 ADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSI  301 (356)
Q Consensus       225 ~~~v~l~~g~~~~PH~h~~~A~ei~~v~~G~~~~~iv~~~g~~~~~~~l~~Gdv~vvP~g~~h~~~~~~~~~~~~~~  301 (356)
                      ....-+.||-   -++.+. +.|+.=|++|+..+.+-....=    ..+.+|+-|-||++.-.-+.. .+...++|.
T Consensus        24 kTlGVm~pGe---Y~F~T~-~~E~MeivsG~l~V~lpg~~ew----~~~~~G~sF~Vpans~F~ikv-~~~~~Y~C~   91 (93)
T d2oyza1          24 VSVGVMLPGE---YTFGTQ-APERMTVVKGALVVKRVGEADW----TTYSSGESFDVEGNSSFELQV-KDATAYLCE   91 (93)
T ss_dssp             EEEEEECSEE---EEEEES-SCEEEEEEESEEEEEETTCSSC----EEEETTCEEEECSSEEEEEEE-SSCEEEEEE
T ss_pred             eEEEEEeccE---EEEcCC-CCEEEEEEeeEEEEECCCCccc----EEeCCCCeEEECCCCEEEEEE-CcceeeEEE
Confidence            4444566774   488898 9999999999999998775531    368899999999887766644 566777764