Citrus Sinensis ID: 018405

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccEEEccccccEEcHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHccccHHHHcccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHccccEEEEcccHHHHHHcccccccEEEEcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccEEEcccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHcccccccEcHHHHHccccccccccccHHHHHHHHHHHHHHcccEEEEccccEEEEEEcHHHcccccccEccEccHHHHHHHccHHHHHHHccHHHHHHHcccHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHcccccccEEEEEcHHHHccccccccEEEEEcccccccccccEEEccccHHHccHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHccccccEEHHHHHHHHHHcccccEEEEEEEccEEEEEEEc
Coil and Loop (DISEMBL)
masmadqeeetNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAqiplkdnnpEAAAMMLDRVLRLLVSYNAlhcsfvdgqrlYSLASVAKYFVRnnqngaslrPYMALRLDKVPMDYWFRLKDQILEGGtafnkahgmsiydymgvdsrfndvfntgmLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKyprikginydlpyviknapsylgiehvggdffesvpeADTILMKWVLSSFDDEQSLKLLKNCYKalpdggkllnvnvtipevpensatsreISILDTIClfqvphgrertKQEYSELAIKAGfkgvnyeygaCNLYVMEFLK
Flexible Loop (DISEMBL)
MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVrnnqngaslrpYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPensatsreisiLDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK
Low Complexity Region (SEG)
MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHvkklvdvggglgATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK
Disordered region (IsUnstruct)
*************FSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEF**
Disordered Region (DISOPRED)
************NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK
Disordered Region (DISEMBL)
***********NNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK
Disordered Region (DISPRO)
*******EEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
A9X7L0	364	Anthranilate N-methyltran	N/A	no	0.952	0.931	0.540	1e-106
P28002	365	Caffeic acid 3-O-methyltr	N/A	no	0.963	0.939	0.514	1e-100
Q43609	365	Caffeic acid 3-O-methyltr	N/A	no	0.983	0.958	0.506	6e-98
Q9XGW0	361	Caffeic acid 3-O-methyltr	N/A	no	0.969	0.955	0.490	7e-98
Q9XGV9	361	Caffeic acid 3-O-methyltr	N/A	no	0.969	0.955	0.498	3e-97
Q8LL87	350	Caffeic acid 3-O-methyltr	N/A	no	0.946	0.962	0.494	5e-97
O23760	370	Caffeic acid 3-O-methyltr	N/A	no	0.966	0.929	0.513	9e-97
Q9FQY8	359	Caffeic acid 3-O-methyltr	N/A	no	0.969	0.961	0.497	9e-97
Q43046	365	Caffeic acid 3-O-methyltr	N/A	no	0.946	0.923	0.508	2e-96
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.946	0.923	0.505	3e-96

>sp|A9X7L0|ANMT_RUTGR Anthranilate N-methyltransferase OS=Ruta graveolens PE=1 SV=1

 Score =  383 bits (984), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/346 (54%), Positives = 259/346 (74%), Gaps = 7/346 (2%)

Query: 13  NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAM 72
           ++S AM+L+ AIVLP A  + ++L VFEII+KA  G +LS +EI A I L+  NP+A  +
Sbjct: 24  SYSRAMQLSMAIVLPMATQSAIQLGVFEIIAKA-PGGRLSASEI-ATI-LQAQNPKAP-V 79

Query: 73  MLDRVLRLLVSYNALHCSFVD--GQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPM 130
           MLDR+LRLLVS+  L CS     G+RLY L SV+KYFV  +Q+GASL  +MAL LDKV M
Sbjct: 80  MLDRMLRLLVSHRVLDCSVSGPAGERLYGLTSVSKYFV-PDQDGASLGNFMALPLDKVFM 138

Query: 131 DYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKG 190
           + W  +K  ++EGG  FN+ HGM I++Y   +S+F+D ++  M  H+ + ++++LE YKG
Sbjct: 139 ESWMGVKGAVMEGGIPFNRVHGMHIFEYASSNSKFSDTYHRAMFNHSTIALKRILEHYKG 198

Query: 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVP 250
           FE+V KLVDVGGGLG TL+MI SKYP I+ IN+DLP+V+++A SY G+EHVGG+ FESVP
Sbjct: 199 FENVTKLVDVGGGLGVTLSMIASKYPHIQAINFDLPHVVQDAASYPGVEHVGGNMFESVP 258

Query: 251 EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILD 310
           E D ILMKW+L  +DDEQ L++LKNCYKA P+ GK++ +N  +PE PE S+++RE S+LD
Sbjct: 259 EGDAILMKWILHCWDDEQCLRILKNCYKATPENGKVIVMNSVVPETPEVSSSARETSLLD 318

Query: 311 TICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
            + + +   GRERT++E++ELAI AGFKG+N+    CNL++MEF K
Sbjct: 319 VLLMTRDGGGRERTQKEFTELAIGAGFKGINFACCVCNLHIMEFFK 364

Involved in the biosynthesis of acridine alkaloids. N-methyltransferase with a strict substrate specificity for anthranilate. No activity with anthranilic acid methyl ester, anthraniloyl CoA, 3- or 4-amino-benzoic acid, salicylic acid, catechol, eugenol, caffeic acid, quercetin, theobromin, theophyllin, putrescine and nicotinic acid among others.
Ruta graveolens (taxid: 37565)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1EC: 1

>sp|P28002|COMT1_MEDSA Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1

 Score =  365 bits (936), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/354 (51%), Positives = 245/354 (69%), Gaps = 11/354 (3%)

Query: 8   EEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNP 67
           +EE N F  AM+LA A VLP  + + +ELD+ EII+KAG GA++S  EI +Q+P    NP
Sbjct: 16  DEEANLF--AMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPT--TNP 71

Query: 68  EAAAMMLDRVLRLLVSYNALHCSF---VDG--QRLYSLASVAKYFVRNNQNGASLRPYMA 122
           +A  +MLDR+LRLL  Y  L CS     DG  QRLY LA+VAKY V+N ++G S+     
Sbjct: 72  DAP-VMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKN-EDGVSISALNL 129

Query: 123 LRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVME 182
           +  DKV M+ W+ LKD +L+GG  FNKA+GM+ ++Y G D RFN VFN GM  H+ + M+
Sbjct: 130 MNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMK 189

Query: 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVG 242
           K+LE+Y GFE +K LVDVGGG GA +N I+SKYP IKGIN+DLP+VI++APSY G+EHVG
Sbjct: 190 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVG 249

Query: 243 GDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSAT 302
           GD F S+P+AD + MKW+   + DE  LK LKNCY+ALPD GK++     +P  P++S  
Sbjct: 250 GDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLA 309

Query: 303 SREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
           ++ +  +D I L   P G+ERT++E+ +LA  AGF+G      A N Y+MEFLK
Sbjct: 310 TKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1

 Score =  357 bits (917), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 183/361 (50%), Positives = 240/361 (66%), Gaps = 11/361 (3%)

Query: 1   MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI 60
           M      +EE N F  AM+LA A VLP  + A +ELD+ EI++KAG G  LS  +I +Q+
Sbjct: 9   MTPTQVSDEEANLF--AMQLASASVLPMVLKAAIELDLLEIMAKAGPGVFLSPTDIASQL 66

Query: 61  PLKDNNPEAAAMMLDRVLRLLVSYNALHCSF---VDG--QRLYSLASVAKYFVRNNQNGA 115
           P K  NP+A  +MLDR+LRLL SY+ L  S     DG  +RLY L  V K F+  N+ G 
Sbjct: 67  PTK--NPDAP-VMLDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCK-FLTKNEEGV 122

Query: 116 SLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLG 175
           S+ P   +  DKV ++ W+ LKD +LEGG  FNKA+GM+ ++Y G D RFN VFN GM  
Sbjct: 123 SIAPLCLMNQDKVLLESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMAD 182

Query: 176 HTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY 235
           H+ + M+K+LE+YKGFE +  +VDVGGG GA LNMI+SKYP IKGIN+DLP+VI++AP Y
Sbjct: 183 HSTITMKKILETYKGFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIEDAPQY 242

Query: 236 LGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295
            G+EHVGGD F SVP+ D I MKW+   + DE  LK LKNCY ALPD GK++     +P 
Sbjct: 243 PGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKVILGECILPV 302

Query: 296 VPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFL 355
            P++S  ++ +  +D I L   P G+ERT+QE+  LA  AGF+G N    A N YV+EFL
Sbjct: 303 APDSSLATKGVVHIDVIMLAHNPGGKERTEQEFQALAKGAGFQGFNVACSAFNTYVIEFL 362

Query: 356 K 356
           K
Sbjct: 363 K 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Prunus dulcis (taxid: 3755)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1

 Score =  357 bits (916), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 175/357 (49%), Positives = 241/357 (67%), Gaps = 12/357 (3%)

Query: 5   ADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKD 64
           +D+EE   NF +AM+LA A VLP  + + +ELD+ E+I K+GAGA +S  ++ AQ+P   
Sbjct: 12  SDEEE---NFLFAMQLASASVLPMVLKSAIELDLLELIKKSGAGAFVSPVDLAAQLPT-- 66

Query: 65  NNPEAAAMMLDRVLRLLVSYNALHC---SFVDG--QRLYSLASVAKYFVRNNQNGASLRP 119
            NP+A  +MLDR+LRLL SY  L C   +  DG  +RLY LA V K+  +N ++G S+ P
Sbjct: 67  TNPDAH-VMLDRILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKN-EDGVSMAP 124

Query: 120 YMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCV 179
              +  DKV M+ W+ L D +++GG  FNKA+GM+ ++Y G D RFN VFN GM  H+ +
Sbjct: 125 LTLMNQDKVLMESWYHLSDAVVDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTI 184

Query: 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIE 239
            M+K+LE+Y GF+ +K +VDVGGG GATLNMI+SKYP IKGIN+DLP+VI++APSY G+E
Sbjct: 185 TMKKILETYTGFDGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVE 244

Query: 240 HVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN 299
           HVGGD F SVP+ D I MKW+   + DE  +K LKNCY ALP  GK++     +PE P+ 
Sbjct: 245 HVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVILAECVLPEAPDT 304

Query: 300 SATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
              ++ +  +D I L   P G+ERT++E+  LA  AGFK  N    A N ++ME LK
Sbjct: 305 GLATKNVVHIDVIMLAHNPGGKERTEKEFQGLAKAAGFKQFNKACCAYNTWIMELLK 361

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9XGV9|COMT2_OCIBA Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1

 Score =  355 bits (910), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 178/357 (49%), Positives = 241/357 (67%), Gaps = 12/357 (3%)

Query: 5   ADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKD 64
           +D+EE   NF +AM+LA A VLP  + + +ELD+ E+I KAGAGA +S AE+ AQ  L  
Sbjct: 12  SDEEE---NFLFAMQLASASVLPMVLKSAIELDLLELIKKAGAGAFVSPAELAAQ--LLT 66

Query: 65  NNPEAAAMMLDRVLRLLVSYNALHC---SFVDG--QRLYSLASVAKYFVRNNQNGASLRP 119
            N EA  +MLDR+LRLL SY  L C   +  DG  QRLY LA V K+  +N ++G S+ P
Sbjct: 67  TNAEAH-VMLDRILRLLTSYAILECRLKTLPDGGVQRLYGLAPVCKFLTKN-EDGVSMAP 124

Query: 120 YMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCV 179
              +  DKV M+ W+ LKD +L+GG  FNKA+GM+ ++Y G D RFN VFN GM  H+ +
Sbjct: 125 LALMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTI 184

Query: 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIE 239
            M+K+LE+Y GF+ +K +VDVGGG GATLNMIISKYP IKGIN+DLP+V+++APSY G+E
Sbjct: 185 TMKKILETYTGFDGLKTVVDVGGGTGATLNMIISKYPSIKGINFDLPHVVEDAPSYPGVE 244

Query: 240 HVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN 299
           HVGGD F SVP+ D I MKW+   + D   +K LK CY+ALP+ GK++     +PE P+ 
Sbjct: 245 HVGGDMFVSVPKGDAIFMKWICHDWSDAHCVKFLKKCYEALPENGKVILAECVLPEAPDT 304

Query: 300 SATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
              ++ +  +D I L   P G+ERT++E+  LA  +GFK  N    A N ++ME LK
Sbjct: 305 GLATKNVVHIDVIMLAHNPGGKERTEKEFQVLAKASGFKQFNKVCCAYNSWIMELLK 361

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1

 Score =  354 bits (909), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 171/346 (49%), Positives = 238/346 (68%), Gaps = 9/346 (2%)

Query: 16  YAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLD 75
           +AM LA A VLP  + + +ELD+ E+I+KAG GA +S +E+ AQ+P   +NPEA  +MLD
Sbjct: 9   FAMSLASASVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLP--THNPEAP-IMLD 65

Query: 76  RVLRLLVSYNALHC---SFVDG--QRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPM 130
           R+LRLL +Y+ L C   +  DG  +RLY LA V K+  +N  +G S+ P + +  DKV M
Sbjct: 66  RILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKN-ADGVSMAPLLLMNQDKVLM 124

Query: 131 DYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKG 190
           + W+ LKD +L+GG  FNKA+GM+ ++Y G D RFN VFN GM  H+ + M+K+LE Y+G
Sbjct: 125 ESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVYRG 184

Query: 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVP 250
           FE +K +VDVGGG GATLNMIISKYP IKGIN++LP+V+++APS+ G+EHVGGD F SVP
Sbjct: 185 FEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFVSVP 244

Query: 251 EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILD 310
           + D I MKW+   + D+   KLLKNCY+ALPD GK++     +PE P+ S  ++ +  +D
Sbjct: 245 KGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLATQNVVHVD 304

Query: 311 TICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
            + L   P G+ERT++E+  LA  AGFK       A N ++ME  K
Sbjct: 305 VVMLAHNPGGKERTEKEFEALAKGAGFKEFRKVCSAVNTWIMELCK 350

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|O23760|COMT1_CLABR Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1

 Score =  353 bits (907), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 184/358 (51%), Positives = 240/358 (67%), Gaps = 14/358 (3%)

Query: 7   QEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKA---GAGAKLSVAEIVAQIPLK 63
            +EE N F  AM+LA A VLP  + A +ELDV EI++K+   G+GA +S AEI AQ+P  
Sbjct: 17  SDEEANLF--AMQLASASVLPMVLKAAIELDVLEIMAKSIPHGSGAYISPAEIAAQLP-- 72

Query: 64  DNNPEAAAMMLDRVLRLLVSYNALHCSF---VDG--QRLYSLASVAKYFVRNNQNGASLR 118
             NP+A  +MLDRVLRLL SY+ + CS     DG  +RLY LA V K F+  N++G SL 
Sbjct: 73  TTNPDAP-VMLDRVLRLLASYSVVTCSLRELPDGKVERLYGLAPVCK-FLTKNEDGVSLA 130

Query: 119 PYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTC 178
           P   +  DKV M+ W+ LKD IL+GG  FNKA+GM+ ++Y G D RFN VFN GM  H+ 
Sbjct: 131 PLCLMNQDKVLMESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHST 190

Query: 179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGI 238
           + M+K+ E Y GFE +  +VDVGGG GA L+MI++KYP IKGIN+DLP+VI++AP Y G+
Sbjct: 191 ITMKKIFEMYTGFEALNTIVDVGGGTGAVLSMIVAKYPSIKGINFDLPHVIEDAPIYPGV 250

Query: 239 EHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPE 298
           EHVGGD F SVP+ D I MKW+   + DE  LK LKNCY ALP+ GK++     +P  P+
Sbjct: 251 EHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPEHGKVIVAECILPLSPD 310

Query: 299 NSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
            S  ++ +  +D I L   P G+ERT++E+  LAI AGFKG      A N YVMEFLK
Sbjct: 311 PSLATKGVIHIDAIMLAHNPGGKERTEKEFEALAIGAGFKGFKVACCAFNTYVMEFLK 368

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Clarkia breweri (taxid: 36903)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2

 Score =  353 bits (907), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 176/354 (49%), Positives = 239/354 (67%), Gaps = 9/354 (2%)

Query: 8   EEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNP 67
           + E   F +AM+LA A VLP  + + +ELD+ EI++KAG GA +S +E+ AQ+P K  NP
Sbjct: 10  QTEDEAFLFAMQLASASVLPMVLKSALELDLLEIMAKAGPGAAISPSELAAQLPTK--NP 67

Query: 68  EAAAMMLDRVLRLLVSYNALHCSF---VDG--QRLYSLASVAKYFVRNNQNGASLRPYMA 122
           EA  +MLDR+LRLL +Y+ L+C+     DG  +RLYSLA V K   +N  +G S+ P + 
Sbjct: 68  EAP-VMLDRMLRLLATYSVLNCTLRTLPDGRVERLYSLAPVCKLLTKN-ADGVSVAPLLL 125

Query: 123 LRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVME 182
           +  DKV M+ W+ L D +L+GG  FNKA+GM+ ++Y G D RFN VFN GM  H+ + M+
Sbjct: 126 MNQDKVLMESWYHLTDAVLDGGVPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTMTMK 185

Query: 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVG 242
           K+LE YKGFE +  +VDVGGG GAT+NMI+SKYP IKGIN+DL +VI++AP+Y G+EHVG
Sbjct: 186 KILEDYKGFEGLNSIVDVGGGTGATVNMIVSKYPSIKGINFDLSHVIEDAPAYPGVEHVG 245

Query: 243 GDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSAT 302
            D F SVP+AD I MKW+   + DE  LK LKNCY+ALP  GK+L     +PE P+ SA 
Sbjct: 246 RDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPANGKVLVAECILPETPDTSAA 305

Query: 303 SREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
           ++    +D + L   P G+ERT++E+  LA  AGF G      A   +VMEF K
Sbjct: 306 TKNAVHVDIVMLAHNPGGKERTEKEFEALAKGAGFTGFRRACCAYQTWVMEFHK 359

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Capsicum annuum (taxid: 4072)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1

 Score =  352 bits (904), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 176/346 (50%), Positives = 234/346 (67%), Gaps = 9/346 (2%)

Query: 16  YAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLD 75
           +AM+LA A VLP  +   +ELD+ EI++KAG GA LS +EI + +P K  NP+A  +MLD
Sbjct: 22  FAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTK--NPDAP-VMLD 78

Query: 76  RVLRLLVSYNALHCSFVD-----GQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPM 130
           R+LRLL SY+ L CS  D      +RLY LA V K F+  N++G S+ P   +  DKV M
Sbjct: 79  RILRLLASYSILTCSLKDLPDGKVERLYGLAPVCK-FLTKNEDGVSVSPLCLMNQDKVLM 137

Query: 131 DYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKG 190
           + W+ LKD ILEGG  FNKA+GM+ ++Y G D RFN VFN GM  H+ + M+K+LE+YKG
Sbjct: 138 ESWYYLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKG 197

Query: 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVP 250
           FE +  LVDVGGG GA +N I+SKYP IKGIN+DLP+VI++APSY G+EHVGGD F SVP
Sbjct: 198 FEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVP 257

Query: 251 EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILD 310
            AD + MKW+   + D   LK LKNCY ALP+ GK++ V   +P  P+ S  ++ +  +D
Sbjct: 258 NADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATKGVVHVD 317

Query: 311 TICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
            I L   P G+ERT++E+  LA  AGF+G      A N +V+EF K
Sbjct: 318 VIMLAHNPGGKERTEKEFEGLANGAGFQGFEVMCCAFNTHVIEFRK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score =  352 bits (903), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 175/346 (50%), Positives = 235/346 (67%), Gaps = 9/346 (2%)

Query: 16  YAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLD 75
           +AM+LA A VLP  +   +ELD+ EI++KAG GA LS +EI + +P K  NP+A  +MLD
Sbjct: 22  FAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTK--NPDAP-VMLD 78

Query: 76  RVLRLLVSYNALHCSFVD-----GQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPM 130
           R+LRLL SY+ L CS  D      +RLY LA V K F+  N++G S+ P   +  DKV M
Sbjct: 79  RILRLLASYSILTCSLKDLPDGKVERLYGLAPVCK-FLTKNEDGVSVSPLCLMNQDKVLM 137

Query: 131 DYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKG 190
           + W+ LKD IL+GG  FNKA+GM+ ++Y G D RFN VFN GM  H+ + M+K+LE+YKG
Sbjct: 138 ESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYKG 197

Query: 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVP 250
           FE +  LVDVGGG GA +N I+SKYP IKGIN+DLP+VI++APSY G+EHVGGD F SVP
Sbjct: 198 FEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVP 257

Query: 251 EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILD 310
           +AD + MKW+   + D   LK LKNCY ALP+ GK++ V   +P  P+ S  ++ +  +D
Sbjct: 258 KADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATKGVVHVD 317

Query: 311 TICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
            I L   P G+ERT++E+  LA  AGF+G      A N +V+EF K
Sbjct: 318 VIMLAHNPGGKERTEKEFEGLAKGAGFQGFEVMCCAFNTHVIEFRK 363

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
224128073	358	catechol o-methyltransferase related [Po	0.969	0.963	0.524	1e-104
342161927	364	RecName: Full=Anthranilate N-methyltrans	0.952	0.931	0.540	1e-104
255548061	359	o-methyltransferase, putative [Ricinus c	0.991	0.983	0.527	1e-103
268528131	356	caffeic acid O-methyltransferase 3 [Goss	0.985	0.985	0.518	1e-102
71482940	362	S-methyltransferase [Catharanthus roseus	0.974	0.958	0.512	1e-102
224068173	359	catechol o-methyltransferase [Populus tr	0.966	0.958	0.515	1e-101
357464229	365	Caffeic acid O-methyltransferase [Medica	0.963	0.939	0.519	1e-100
284437809	377	O-methyltransferase-like protein [Prunus	0.955	0.901	0.517	1e-100
19550749	364	caffeic acid O-methyltransferase II [Nic	0.985	0.964	0.508	1e-100
429114	365	catechol O-methyltransferase [Nicotiana	0.985	0.961	0.512	1e-100

>gi|224128073|ref|XP_002320237.1| catechol o-methyltransferase related [Populus trichocarpa] gi|118481911|gb|ABK92890.1| unknown [Populus trichocarpa] gi|222861010|gb|EEE98552.1| catechol o-methyltransferase related [Populus trichocarpa]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/349 (52%), Positives = 252/349 (72%), Gaps = 4/349 (1%)

Query: 8   EEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNP 67
           E +  NF YAM+LA + VLP  M++ ++L +FEII+KAG  AKLS +++ AQ+P K  NP
Sbjct: 14  EAKDENFGYAMQLALSSVLPMTMYSAIQLGIFEIIAKAGPDAKLSASDVAAQLPTK--NP 71

Query: 68  EAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDK 127
           +A  MMLDR+LRLL S++ L CS    +RLYSLA V+K++VRN ++G SL P+MAL  D 
Sbjct: 72  DAP-MMLDRILRLLASHDVLGCSVDGSERLYSLAPVSKHYVRN-KDGVSLGPFMALIQDN 129

Query: 128 VPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLES 187
           V +  W +LKD +LEGG AF++ HG   ++Y G+D RFN VFNT M   T VV+E +LE+
Sbjct: 130 VFLQSWSQLKDAVLEGGVAFDRVHGAHAFEYPGLDPRFNQVFNTAMYNQTTVVLENMLEA 189

Query: 188 YKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFE 247
           Y GF+++K+LV++GGG+G T+  IISKYP+IKGIN+DLP+VI++APS  G+EHVGGD FE
Sbjct: 190 YTGFKNLKQLVEIGGGMGHTIKAIISKYPQIKGINFDLPHVIEHAPSCPGVEHVGGDMFE 249

Query: 248 SVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREIS 307
           SVP+ D I +KW+L  + D+  LKLLKNCYKA+PD GK++ +   +    + S  +R IS
Sbjct: 250 SVPKGDAIFLKWILHDWSDDHCLKLLKNCYKAIPDNGKVIVMESVLSITAKTSPAARAIS 309

Query: 308 ILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
            LD + + Q P G+ERT+ E+  LA  AGF+G+ YE   CN +VMEF K
Sbjct: 310 QLDVLMMTQNPGGKERTEHEFMALATGAGFRGIKYEAFVCNFWVMEFFK 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|342161927|sp|A9X7L0.1|ANMT_RUTGR RecName: Full=Anthranilate N-methyltransferase; Short=RgANMT gi|115315700|gb|ABI93949.1| anthranilate N-methyltransferase [Ruta graveolens]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/346 (54%), Positives = 259/346 (74%), Gaps = 7/346 (2%)

Query: 13  NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAM 72
           ++S AM+L+ AIVLP A  + ++L VFEII+KA  G +LS +EI A I L+  NP+A  +
Sbjct: 24  SYSRAMQLSMAIVLPMATQSAIQLGVFEIIAKA-PGGRLSASEI-ATI-LQAQNPKAP-V 79

Query: 73  MLDRVLRLLVSYNALHCSFVD--GQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPM 130
           MLDR+LRLLVS+  L CS     G+RLY L SV+KYFV  +Q+GASL  +MAL LDKV M
Sbjct: 80  MLDRMLRLLVSHRVLDCSVSGPAGERLYGLTSVSKYFV-PDQDGASLGNFMALPLDKVFM 138

Query: 131 DYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKG 190
           + W  +K  ++EGG  FN+ HGM I++Y   +S+F+D ++  M  H+ + ++++LE YKG
Sbjct: 139 ESWMGVKGAVMEGGIPFNRVHGMHIFEYASSNSKFSDTYHRAMFNHSTIALKRILEHYKG 198

Query: 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVP 250
           FE+V KLVDVGGGLG TL+MI SKYP I+ IN+DLP+V+++A SY G+EHVGG+ FESVP
Sbjct: 199 FENVTKLVDVGGGLGVTLSMIASKYPHIQAINFDLPHVVQDAASYPGVEHVGGNMFESVP 258

Query: 251 EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILD 310
           E D ILMKW+L  +DDEQ L++LKNCYKA P+ GK++ +N  +PE PE S+++RE S+LD
Sbjct: 259 EGDAILMKWILHCWDDEQCLRILKNCYKATPENGKVIVMNSVVPETPEVSSSARETSLLD 318

Query: 311 TICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
            + + +   GRERT++E++ELAI AGFKG+N+    CNL++MEF K
Sbjct: 319 VLLMTRDGGGRERTQKEFTELAIGAGFKGINFACCVCNLHIMEFFK 364

Source: Ruta graveolens

Species: Ruta graveolens

Genus: Ruta

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548061|ref|XP_002515087.1| o-methyltransferase, putative [Ricinus communis] gi|223545567|gb|EEF47071.1| o-methyltransferase, putative [Ricinus communis]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/362 (52%), Positives = 250/362 (69%), Gaps = 9/362 (2%)

Query: 1   MASMAD------QEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVA 54
           MAS A+       EE   NF YAM+LA    LP ++HA +EL VFEII+KAG  +KLS +
Sbjct: 1   MASSAETRLHPIDEEHDENFGYAMQLALGSALPMSLHAAIELGVFEIIAKAGPESKLSAS 60

Query: 55  EIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNG 114
           EI A+IP    NP+AA + LDRVLRLL S+N L CS    +RLYSL  V+KYFV N Q+G
Sbjct: 61  EITAEIP-DVQNPDAA-ITLDRVLRLLASHNVLGCSLNGLERLYSLNPVSKYFVPN-QDG 117

Query: 115 ASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGML 174
            SL P+MAL  DKV +D W +LKD +LEGG+ FNK HG   + Y G+DSRFN VFNT M 
Sbjct: 118 ISLGPFMALIQDKVFLDSWTKLKDAVLEGGSPFNKFHGTHCFGYSGLDSRFNHVFNTAMF 177

Query: 175 GHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS 234
            HT +V+ K+LE+YKGF+ +K+L+DVGGGLG TL  IISKYP +KGIN+DLP+V+K AP+
Sbjct: 178 HHTNLVITKILETYKGFKQLKQLIDVGGGLGHTLKAIISKYPHLKGINFDLPHVVKYAPA 237

Query: 235 YLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP 294
             G+EHV GD FESVP+ + I MKW+L  + DE  L+LLKNCY+ALPD GK++ ++  +P
Sbjct: 238 IPGVEHVAGDMFESVPKGEAIFMKWILHDWSDEHCLRLLKNCYEALPDDGKVIVMDAVLP 297

Query: 295 EVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEF 354
            +PE    ++     D + +     G ERT+ E+  +A  AGF+G+ Y   ACN ++MEF
Sbjct: 298 VMPETGKAAKANFQTDLVVMTVYEGGTERTEHEFLAMATAAGFRGIRYVCCACNFWIMEF 357

Query: 355 LK 356
            K
Sbjct: 358 FK 359

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|268528131|gb|ACZ06242.1| caffeic acid O-methyltransferase 3 [Gossypium hirsutum]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/361 (51%), Positives = 253/361 (70%), Gaps = 10/361 (2%)

Query: 1   MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI 60
           MA+  D   E  +FSYA+++  + VLP +MHA V+LD+F I++K G  AKLS  EI AQ 
Sbjct: 1   MATQIDCNNE-ESFSYALQIVTSSVLPMSMHAAVQLDIFGIMAKCGPDAKLSAKEIAAQ- 58

Query: 61  PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR-----LYSLASVAKYFVRNNQNGA 115
            L  NN EAA+M LDR+L LL S+  + CS VD ++     LYSL  V+K+FVRN ++G 
Sbjct: 59  -LATNNSEAASM-LDRILLLLASHGIVGCSVVDEEKGNPRKLYSLTPVSKFFVRN-EDGV 115

Query: 116 SLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLG 175
           SL P MAL  DKV +D W +LKD I+EGG  F++ HG + ++Y G D RFN +FNT M+ 
Sbjct: 116 SLGPLMALLQDKVFIDSWSQLKDAIIEGGVPFDRVHGSNTFEYPGKDPRFNQIFNTAMIN 175

Query: 176 HTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY 235
           HT +V++++L +YKGF+ +  LVDVGGGLG TLN+I SKYP IKGIN+DLP+VI++AP+Y
Sbjct: 176 HTSLVLKEILHNYKGFQQLSSLVDVGGGLGITLNLITSKYPSIKGINFDLPHVIQHAPAY 235

Query: 236 LGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295
            G++HVG D FESVP+   I MKW+L  +  +  LKLLKNCY A+P  GK++ V   +P+
Sbjct: 236 PGVQHVGRDMFESVPKGAAIFMKWILHDWSGDHCLKLLKNCYNAIPKDGKVIVVEAVVPD 295

Query: 296 VPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFL 355
           VPE +A  R I+ +D + L Q P G+ERTK E+  LA KAGF G+ YE  AC+ ++MEF 
Sbjct: 296 VPEANAYLRSITQVDMVMLAQDPGGKERTKSEFEALATKAGFSGIRYECFACSYWIMEFF 355

Query: 356 K 356
           K
Sbjct: 356 K 356

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71482940|gb|AAZ32409.1| S-methyltransferase [Catharanthus roseus]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/359 (51%), Positives = 262/359 (72%), Gaps = 12/359 (3%)

Query: 5   ADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKD 64
           +  +E+ ++ SYA++L  +  LP  ++AV++L+VFEII+KAG GAKLS ++IV+Q+P K 
Sbjct: 9   SSNKEDDDHSSYALQLVFSGALPMVLNAVIKLNVFEIIAKAGPGAKLSPSQIVSQMPTK- 67

Query: 65  NNPEAAAMMLDRVLRLLVSYNALHCSFVD-----GQRLYSLASVAKYFVRNNQNGASLRP 119
            NPEA  ++LDR+LR+L SY+ L CS VD     GQR+Y L+ V+KYFV+N +NG    P
Sbjct: 68  -NPEAP-VVLDRMLRMLASYSVLTCSVVDFSHGSGQRVYGLSPVSKYFVKN-ENGGCFGP 124

Query: 120 YMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCV 179
            + L  DKV  D W+ L   +LEGGTAFN+A+ M I+ Y G++ +FN+ FNT  + H  V
Sbjct: 125 LLDLLQDKVLTDIWYELAPAVLEGGTAFNRAYNMHIFKYTGINQKFNETFNTATINHAKV 184

Query: 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIE 239
           +++++L++YKGFE++K LVDVGGGLG TL++I SKYP +KGINYDLP+V +NAP+Y G+ 
Sbjct: 185 IVQEILKNYKGFENLKTLVDVGGGLGVTLDLITSKYPNLKGINYDLPHVTQNAPTYPGVV 244

Query: 240 HVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN 299
           HVGGD FESVP+ D I MKW+L  +DDE  LKLLKNCYKALP+ GK++ V+  +P  P+N
Sbjct: 245 HVGGDMFESVPKGDAIFMKWILHDWDDEHCLKLLKNCYKALPENGKVIAVDAILPMNPDN 304

Query: 300 SATSREISILD--TICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
           S++++ IS +D  T+ L+  P G+ERT+ E+  L  +AGF G+      C+L+VMEF K
Sbjct: 305 SSSTKHISQVDLFTLVLYH-PGGKERTENEFLALVAEAGFGGIRKVCVCCDLWVMEFYK 362

Source: Catharanthus roseus

Species: Catharanthus roseus

Genus: Catharanthus

Family: Apocynaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068173|ref|XP_002302676.1| catechol o-methyltransferase [Populus trichocarpa] gi|222844402|gb|EEE81949.1| catechol o-methyltransferase [Populus trichocarpa]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/351 (51%), Positives = 248/351 (70%), Gaps = 7/351 (1%)

Query: 8   EEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNP 67
           E +  NF YAM+LA + VLP  +H  ++L +FEII+KAG   KLS A+I A++P   +NP
Sbjct: 14  EAKDENFGYAMQLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLP--TDNP 71

Query: 68  EAAAMMLDRVLRLLVSYNALHCSFVDG-QRLYSLASVAKYFVRNNQNGASLRPYMALRLD 126
           +   M LDR+LRLL S+  L C FVDG +R YSLA V+ YFVRN QNG SL P+MAL  +
Sbjct: 72  DTPKM-LDRILRLLASHQVL-CCFVDGSERFYSLAPVSMYFVRN-QNGVSLAPFMALIHE 128

Query: 127 KVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLE 186
            V +  W +LKD +LEGG AF++ HG+  ++Y G+D RFN VFNT M   T VV   +LE
Sbjct: 129 NVILQSWSQLKDAVLEGGVAFHRVHGVHAFEYNGLDPRFNQVFNTAMYNQTTVVNGNMLE 188

Query: 187 SYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFF 246
            Y GF+++K+LVD+GGGLG T+  + SKYP+IKGIN+DLP+VI++AP+Y G+EHVGGD F
Sbjct: 189 KYNGFKNLKQLVDIGGGLGHTMKAVTSKYPQIKGINFDLPHVIEHAPAYPGVEHVGGDMF 248

Query: 247 ESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREI 306
           ESVP+ D I +KW+L ++ D+  LKLLKNCYKA+P+ GK++ +   +P   + S  ++ I
Sbjct: 249 ESVPKGDAIFLKWILHNWSDDHCLKLLKNCYKAIPEDGKVIVMESVLPITAKTSPAAKAI 308

Query: 307 SILDTICLF-QVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
           S LD + +  Q P G+ERT+ E+  LA  AGF+G+ +E   CN +VMEF K
Sbjct: 309 SQLDVLMMMSQNPGGKERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464229|ref|XP_003602396.1| Caffeic acid O-methyltransferase [Medicago truncatula] gi|355491444|gb|AES72647.1| Caffeic acid O-methyltransferase [Medicago truncatula]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/354 (51%), Positives = 246/354 (69%), Gaps = 11/354 (3%)

Query: 8   EEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNP 67
           +EE N F  AM+LA A VLP  + + +ELD+ EII+KAG GA++S  EI +Q+P    NP
Sbjct: 16  DEEANLF--AMQLASASVLPMVLKSALELDLLEIIAKAGPGAQISPIEIASQLPT--TNP 71

Query: 68  EAAAMMLDRVLRLLVSYNALHCSF---VDG--QRLYSLASVAKYFVRNNQNGASLRPYMA 122
           EA  +MLDR+LRLL  YN L CS     DG  QRLY LA+VAKY V+N ++G S+     
Sbjct: 72  EAP-VMLDRILRLLACYNILTCSVRTQQDGKVQRLYGLATVAKYLVKN-EDGVSISALNL 129

Query: 123 LRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVME 182
           +  DKV M+ W+ LKD +L+GG  FNKA+GM+ ++Y G D RFN VFN GM  H+ + M+
Sbjct: 130 MNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMK 189

Query: 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVG 242
           K+LE+Y GFE +K LVDVGGG GA +N I+SKYP IKGIN+DLP+VI++APSY G+EHVG
Sbjct: 190 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVG 249

Query: 243 GDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSAT 302
           GD F S+P+AD + MKW+   + DE  LK LKNCY+ALPD GK++     +P  P++S  
Sbjct: 250 GDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLA 309

Query: 303 SREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
           ++ +  +D I L   P G+ERT++E+ +LA  AGF+G      A N Y+MEFLK
Sbjct: 310 TKGVVHIDAIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284437809|gb|ADB85561.1| O-methyltransferase-like protein [Prunus mume]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/352 (51%), Positives = 244/352 (69%), Gaps = 12/352 (3%)

Query: 13  NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAM 72
           +F YAM+L G+  L  ++ + ++L VF+II++ G  AKLS + I A+I  K  NPEA  M
Sbjct: 30  SFCYAMQLVGSSALSMSLQSAIKLGVFDIIAREGPDAKLSSSGIAAKIGTK--NPEAP-M 86

Query: 73  MLDRVLRLLVSYNALHCSFV------DGQRLYSLASVAKYFVRNNQNGASLRPYMALRLD 126
           M+DR+LRLL S++ L+CS V      D QR+YSL  V+KYFV +++ G SL P M L  D
Sbjct: 87  MVDRILRLLTSHSVLNCSAVAANGGSDFQRVYSLGPVSKYFV-SDEEGGSLGPSMTLIQD 145

Query: 127 KVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLE 186
           KV M+ W +LKD ++EGG  FN+ HGM  ++Y G+D RFN VFNT M  HT +V++K+L 
Sbjct: 146 KVFMESWSQLKDAVVEGGIPFNRVHGMHAFEYPGLDPRFNQVFNTAMFNHTTIVIKKLLH 205

Query: 187 SYKGFE--HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGD 244
            YKG E  ++ +LVDVGGGLG TLN+I S+Y  IKGIN+DLP+V+ +APSY G+EHVGGD
Sbjct: 206 IYKGLEDKNLTQLVDVGGGLGVTLNLITSRYQHIKGINFDLPHVVNHAPSYPGVEHVGGD 265

Query: 245 FFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSR 304
            F SVP  D I MKW+L  + DE  LKLLKNCYKA+PD GK++ V   +P +PE S  ++
Sbjct: 266 MFASVPSGDAIFMKWILHDWSDEHCLKLLKNCYKAIPDNGKVIVVEALLPAMPETSTATK 325

Query: 305 EISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
             S LD + + Q P G+ER++QE+  LA  AGF G+ YE   CN +VMEF K
Sbjct: 326 TTSQLDVVMMTQNPGGKERSEQEFMALATGAGFSGIRYECFVCNFWVMEFFK 377

Source: Prunus mume

Species: Prunus mume

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19550749|gb|AAL91506.1|AF484252_1 caffeic acid O-methyltransferase II [Nicotiana tabacum]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/362 (50%), Positives = 250/362 (69%), Gaps = 11/362 (3%)

Query: 2   ASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIP 61
           + +  Q EE  N +YAM+L  + VLP  +H+ ++L+VFEI++K+    KLS ++IV+QIP
Sbjct: 7   SQIPTQSEEERNCTYAMQLLSSSVLPFVLHSTIQLEVFEILAKSN-DTKLSASQIVSQIP 65

Query: 62  LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD------GQ-RLYSLASVAKYFVRNNQNG 114
                PEA  M L+R+L +L SY+   CS V+      GQ R+Y L+ V K+FV+N +NG
Sbjct: 66  -NCTKPEAPTM-LNRMLYVLASYSLFTCSIVEDEKNNGGQKRVYGLSQVGKFFVKN-ENG 122

Query: 115 ASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGML 174
           AS+ P +AL  +KV ++ WF LKD +LEGG  F++ HG+  ++Y   D +FNDVFN  M+
Sbjct: 123 ASMGPLLALLQNKVFINSWFELKDAVLEGGVPFDRVHGVHAFEYPKSDPKFNDVFNKAMI 182

Query: 175 GHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS 234
            HT VVM+K+LE+YKGFE++K LVDVGGGLG  L MI SKYP IKG N+DLP+V+++APS
Sbjct: 183 NHTTVVMKKILENYKGFENLKTLVDVGGGLGVNLKMITSKYPTIKGTNFDLPHVVQHAPS 242

Query: 235 YLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP 294
           Y G+EHVGGD FESVPE D I MKW+L  + D  +LKLLKNCYKALPD GK++ V   +P
Sbjct: 243 YPGVEHVGGDMFESVPEGDAIFMKWILHDWSDSHNLKLLKNCYKALPDNGKVIVVEAILP 302

Query: 295 EVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEF 354
             P+       +S  D I + Q P G+ER+++E+  LA +AGFKGVN     CN +VMEF
Sbjct: 303 VKPDIDTAVVGVSQCDLIMMAQNPGGKERSEEEFRALATEAGFKGVNLICCVCNFWVMEF 362

Query: 355 LK 356
            K
Sbjct: 363 CK 364

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429114|emb|CAA50561.1| catechol O-methyltransferase [Nicotiana tabacum]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/363 (51%), Positives = 252/363 (69%), Gaps = 12/363 (3%)

Query: 2   ASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIP 61
           + +  Q EE  N +YAM+L  + VLP  +H+ ++L+VFEI++K+    KLS ++IV+QIP
Sbjct: 7   SQIPTQSEEERNCTYAMQLLSSSVLPFVLHSTIQLEVFEILAKSN-DTKLSASQIVSQIP 65

Query: 62  LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD------GQ-RLYSLASVAKYFVRNNQNG 114
               NP+AA M LDR+L +L SY+   CS V+      GQ R+Y L+ V K+FVR+ ++G
Sbjct: 66  -NCKNPDAATM-LDRMLYVLASYSLFTCSIVEDEENNGGQKRVYGLSQVGKFFVRD-EDG 122

Query: 115 ASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGM-SIYDYMGVDSRFNDVFNTGM 173
           AS+ P +AL  DKV ++ WF LKD +LEGG  F++ HG+   ++Y   D +FNDVFN  M
Sbjct: 123 ASMGPLLALLQDKVFINSWFELKDAVLEGGVPFDRVHGVVHAFEYPKSDPKFNDVFNKAM 182

Query: 174 LGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAP 233
           + HT VVM+K+LE+YKGFE++K LVDVGGGLG  L MI SKYP IKG N+DLP+V+++AP
Sbjct: 183 INHTTVVMKKILENYKGFENLKTLVDVGGGLGVNLKMITSKYPTIKGTNFDLPHVVQHAP 242

Query: 234 SYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293
           SY G+EHVGGD FESVPE D I MKW+L  + D  +LKLLKNCYKALPD GK++ V   +
Sbjct: 243 SYPGVEHVGGDMFESVPEGDAIFMKWILHDWSDSHNLKLLKNCYKALPDNGKVIVVEAIL 302

Query: 294 PEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVME 353
           P  P+       +S  D I + Q P G+ER+++E+  LA +AGFKGVN     CN +VME
Sbjct: 303 PVKPDIDTAVVGVSQCDLIMMAQNPGGKERSEEEFRALATEAGFKGVNLICCVCNFWVME 362

Query: 354 FLK 356
           F K
Sbjct: 363 FCK 365

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.941	0.922	0.468	5.2e-81
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.974	0.942	0.421	6.1e-71
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.977	0.966	0.426	6.1e-71
TAIR|locus:2038026	352	AT1G33030 [Arabidopsis thalian	0.966	0.977	0.382	3e-62
TAIR|locus:2199582	373	IGMT4 "indole glucosinolate O-	0.946	0.903	0.379	1.3e-61
TAIR|locus:2030081	367	IGMT5 "indole glucosinolate O-	0.971	0.942	0.370	3.4e-61
TAIR|locus:2199607	373	IGMT1 "indole glucosinolate O-	0.946	0.903	0.376	7.1e-61
TAIR|locus:2204680	381	AT1G77520 [Arabidopsis thalian	0.983	0.918	0.372	1.2e-60
TAIR|locus:2199587	373	IGMT2 "indole glucosinolate O-	0.946	0.903	0.376	3.1e-60
TAIR|locus:2034016	363	AT1G51990 [Arabidopsis thalian	0.966	0.947	0.377	5e-60

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 162/346 (46%), Positives = 230/346 (66%)

Query:    16 YAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLD 75
             +AM+LA A VLP A+ + +ELD+ EI++K G+   +S  EI +++P K  NPEA  +MLD
Sbjct:    22 FAMQLASASVLPMALKSALELDLLEIMAKNGS--PMSPTEIASKLPTK--NPEAP-VMLD 76

Query:    76 RVLRLLVSYNALHCS----FVDG-QRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPM 130
             R+LRLL SY+ L CS      DG +R+Y L  V KY  +N ++G S+     +  DKV M
Sbjct:    77 RILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCKYLTKN-EDGVSIAALCLMNQDKVLM 135

Query:   131 DYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKG 190
             + W+ LKD IL+GG  FNKA+GMS ++Y G D RFN VFN GM  H+ + M+K+LE+YKG
Sbjct:   136 ESWYHLKDAILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKG 195

Query:   191 FEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVP 250
             FE             ATL MI+SKYP +KGIN+DLP+VI++APS+ GIEHVGGD F SVP
Sbjct:   196 FEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVP 255

Query:   251 EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILD 310
             + D I MKW+   + DE  +K LKNCY++LP+ GK++     +PE P++S +++++  +D
Sbjct:   256 KGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPETPDSSLSTKQVVHVD 315

Query:   311 TICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
              I L   P G+ERT++E+  LA  +GFKG+     A  + ++E LK
Sbjct:   316 CIMLAHNPGGKERTEKEFEALAKASGFKGIKVVCDAFGVNLIELLK 361

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 156/370 (42%), Positives = 222/370 (60%)

Query:     1 MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKA---GAGAK---LSVA 54
             MA+ AD+E       YA++LA + +LP  +   +EL + E +  A   G G K   L+ A
Sbjct:     8 MAAAADEEA----CMYALQLASSSILPMTLKNAIELGLLETLQSAAVAGGGGKAALLTPA 63

Query:    55 EIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-----QRLYSLASVAKYFVR 109
             E+  ++P K N P AAA M+DR+LRLL SYN + C   +G      R Y+ A V K+   
Sbjct:    64 EVADKLPSKAN-P-AAADMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTP 121

Query:   110 NNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVF 169
             N ++G S+     +  DKV M+ W+ LKD +L+GG  FNKA+GM+ ++Y G D+RFN VF
Sbjct:   122 N-EDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDARFNRVF 180

Query:   170 NTGMLGHTCVVMEKVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVI 229
             N GM  H+ ++ +K+L+ Y GF+             AT+  ++S++P I+GINYDLP+VI
Sbjct:   181 NEGMKNHSVIITKKLLDLYTGFDAASTVVDVGGGVGATVAAVVSRHPHIRGINYDLPHVI 240

Query:   230 KNAPSYLGIEHVGGDFFESVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN 288
               AP + G+EHVGGD F SVP   D ILMKW+L  + DE   +LLKNCY ALP+ GK++ 
Sbjct:   241 SEAPPFPGVEHVGGDMFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVV 300

Query:   289 VNVTIPEVPENSATSREISI--LDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGA 346
             V   +PE   + AT+RE  +  +D I L   P G+ER ++E+ ELA  AGF G    Y  
Sbjct:   301 VECVLPE--SSDATAREQGVFHVDMIMLAHNPGGKERYEREFRELARAAGFTGFKATYIY 358

Query:   347 CNLYVMEFLK 356
              N + +EF K
Sbjct:   359 ANAWAIEFTK 368

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 154/361 (42%), Positives = 214/361 (59%)

Query:     1 MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI 60
             MA+ AD+E       YA++L  + +LP  +   +EL + E +  AG G  L+ AE+ A++
Sbjct:     8 MAASADEEA----CMYALQLVSSSILPMTLKNAIELGLLETLVAAG-GKLLTPAEVAAKL 62

Query:    61 PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ-----RLYSLASVAKYFVRNNQNGA 115
             P    NP AAA M+DR+LRLL SYN + C+  +G+     R Y  A V K F+  N++G 
Sbjct:    63 P-STANP-AAADMVDRMLRLLASYNVVSCTMEEGKDGRLSRRYRAAPVCK-FLTPNEDGV 119

Query:   116 SLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLG 175
             S+     +  DKV M+ W+ LKD +L+GG  FNKA+GMS ++Y G D RFN VFN GM  
Sbjct:   120 SMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKN 179

Query:   176 HTCVVMEKVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSY 235
             H+ ++ +K+LE YKGFE             AT+  I + YP IKGIN+DLP+VI  A  +
Sbjct:   180 HSIIITKKLLEVYKGFEGLGTIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISEAQPF 239

Query:   236 LGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295
              G+ HVGGD F+ VP  D ILMKW+L  + DE    LLKNCY ALP  GK++ V   +P 
Sbjct:   240 PGVTHVGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYDALPAHGKVVLVECILPV 299

Query:   296 VPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFL 355
              PE +  ++ +  +D I L   P GRER ++E+  LA  AGFK +   Y   N + +EF 
Sbjct:   300 NPEATPKAQGVFHVDMIMLAHNPGGRERYEREFEALAKGAGFKAIKTTYIYANAFAIEFT 359

Query:   356 K 356
             K
Sbjct:   360 K 360

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 135/353 (38%), Positives = 204/353 (57%)

Query:     9 EETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPE 68
             EE N  SYAM L+ + VLP  +   ++L +F+I++++G  +   +  +++    K ++  
Sbjct:     2 EEQNLSSYAMILSSSSVLPMVLKTAIDLGLFDILAESGPSSASQIFSLLSNETKKHHD-- 59

Query:    69 AAAMMLDRVLRLLVSYNALHCSFVD--GQ--RLYSLASVAKYFVRNNQNGASLRPYMALR 124
               + +++R+LR L SY+ L CS     G+   +Y LA VAKYF +N   G SL P + L 
Sbjct:    60 --SSLVNRILRFLASYSILTCSVSTEHGEPFAIYGLAPVAKYFTKNQNGGGSLAPMVNLF 117

Query:   125 LDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKV 184
              DKV  D W+ LKD +LEGG  FN  HG S  + +G DSRF +VF + M G   V +E+ 
Sbjct:   118 QDKVVTDMWYNLKDSVLEGGLPFNNTHGSSAVELVGSDSRFREVFQSSMKGFNEVFIEEF 177

Query:   185 LESYKGFEHXXXXXXXXXXXXATLNMIISKYPRI-KGINYDLPYVIKNAPSYLGIEHVGG 243
             L++Y GF+             + L+ IISK+  I K IN+DLP VI  +    GIEHV G
Sbjct:   178 LKNYNGFDGVKSLVDVGGGDGSLLSRIISKHTHIIKAINFDLPTVINTSLPSPGIEHVAG 237

Query:   244 DFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATS 303
             D F + P+ + I MKW+L S+DD+  +K+L NCY++LP  GK++ V++ IPE P ++   
Sbjct:   238 DMFTNTPKGEAIFMKWMLHSWDDDHCVKILSNCYQSLPSNGKVIVVDMVIPEFPGDTLLD 297

Query:   304 REISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
             R +   +   +   P G+ERTK+E+  LA  AGF  V   + +    V+EF K
Sbjct:   298 RSLFQFELFMMNMNPSGKERTKKEFEILARLAGFSNVQVPFTSLCFSVLEFHK 350

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

TAIR|locus:2199582 IGMT4 "indole glucosinolate O-methyltransferase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 132/348 (37%), Positives = 208/348 (59%)

Query:    17 AMELAGAIVLPAAMHAVVELDVFEII-SKAG-AGAKLSVAEIVAQIPLKDNNPEAAAMML 74
             A+ LA A   P  + A +EL VF+ + ++A  + + LS +EI +++P    NPEA  ++L
Sbjct:    29 AVRLANAAAFPMVLKAALELGVFDTLYAEASRSDSFLSPSEIASKLPTTPRNPEAP-VLL 87

Query:    75 DRVLRLLVSYNALHCSFVD---GQRLYSLASVAKYFVRNN-QNGASLRPYMALRLDKVPM 130
             DR+LRLL SY+ + C  V    G+R+Y    + ++F+++N Q+  SL   + +  D V +
Sbjct:    88 DRMLRLLASYSVVKCGKVSEGKGERVYRAEPICRFFLKDNIQDIGSLASQVIVNFDSVFL 147

Query:   131 DYWFRLKDQILEGGTAFNKAHG-MSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYK 189
             + W +LKD +LEGG AF +AHG M ++DYMG D RF+ +FN    G T  V++K LE Y+
Sbjct:   148 NTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFN--QTGFTIAVVKKALEVYQ 205

Query:   190 GFEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESV 249
             GF+              TL ++ SKYP IKGIN+DL   +  APSY G+EHV GD F  V
Sbjct:   206 GFKGVNVLVDVGGGVGNTLGVVASKYPNIKGINFDLTCALAQAPSYPGVEHVAGDMFVDV 265

Query:   250 PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI- 308
             P  D +++K +L  + DE  +K+LKNC+K+LP+ GK++ + +  P+  EN   +  I+  
Sbjct:   266 PTGDAMILKRILHDWTDEDCVKILKNCWKSLPESGKVVVIELVTPDEAENGDINANIAFD 325

Query:   309 LDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
             +D +   Q   G+ER++ E+  LA  +GF    +   A + +++EF K
Sbjct:   326 MDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFCK 373

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2030081 IGMT5 "indole glucosinolate O-methyltransferase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 133/359 (37%), Positives = 206/359 (57%)

Query:     8 EEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKA------GAGAKLSVAEIVAQIP 61
             +EET     A+ LA     P    A +EL V + +  A      G+ + L+ +EI  ++P
Sbjct:    10 DEETELGLAAVRLANCAAFPMVFKAAIELGVIDTLYLAARDDVTGSSSFLTPSEIAIRLP 69

Query:    62 LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNN--QNGASLRP 119
              K +NPEA A+ LDR+LRLL SY+ + C  +DG R+Y    + +YF+++N  +   +L  
Sbjct:    70 TKPSNPEAPAL-LDRILRLLASYSMVKCQIIDGNRVYKAEPICRYFLKDNVDEELGTLAS 128

Query:   120 YMALRLDKVPMDYWFRLKDQILEGGTAFNKAHG-MSIYDYMGVDSRFNDVFNTGMLGHTC 178
              + + LD V ++ W  LK+ +LEGG AF +A+G + ++DY+  D R + +FN    G + 
Sbjct:   129 QLIVTLDTVFLNTWGELKNVVLEGGVAFGRANGGLKLFDYISKDERLSKLFNR--TGFSV 186

Query:   179 VVMEKVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLGI 238
              V++K+L+ Y GFE              TL  + SKYP IKGIN+DL   +  APSY  +
Sbjct:   187 AVLKKILQVYSGFEGVNVLVDVGGGVGDTLGFVTSKYPNIKGINFDLTCALTQAPSYPNV 246

Query:   239 EHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPE 298
             EHV GD F  VP+ D IL+K +L  + DE   K+LKNC+KALP+ GK++ + V  P+  +
Sbjct:   247 EHVAGDMFVDVPKGDAILLKRILHDWTDEDCEKILKNCWKALPENGKVIVMEVVTPDEAD 306

Query:   299 NSATSREISI-LDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
             N      I+  +D + L Q+  G+ER++ EY  +A  +GF   N+   A +L+V+E  K
Sbjct:   307 NRDVISNIAFDMDLLMLTQLSGGKERSRAEYVAMAANSGFPRCNFVCSAYHLWVIELTK 365

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 131/348 (37%), Positives = 203/348 (58%)

Query:    17 AMELAGAIVLPAAMHAVVELDVFEIISKAGAGAK--LSVAEIVAQIPLKDNNPEAAAMML 74
             A+ LA A   P  + A +EL VF+ +  A +     LS  EI +++P    NPEA  ++L
Sbjct:    29 AVRLANAAAFPMVLKAALELGVFDTLYAAASRTDSFLSPYEIASKLPTTPRNPEAP-VLL 87

Query:    75 DRVLRLLVSYNALHCSFV---DGQRLYSLASVAKYFVRNN-QNGASLRPYMALRLDKVPM 130
             DR+LRLL SY+ + C       G+R+Y    + ++F+++N Q+  SL   + +  D V +
Sbjct:    88 DRMLRLLASYSMVKCGKALSGKGERVYRAEPICRFFLKDNIQDIGSLASQVIVNFDSVFL 147

Query:   131 DYWFRLKDQILEGGTAFNKAHG-MSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYK 189
             + W +LKD +LEGG AF +AHG M ++DYMG D RF+ +FN    G T  V++K LE Y+
Sbjct:   148 NTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFN--QTGFTIAVVKKALEVYE 205

Query:   190 GFEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESV 249
             GF+              TL ++ SKYP IKGIN+DL   +  APSY G+EHV GD F  V
Sbjct:   206 GFKGVKVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYPGVEHVAGDMFVDV 265

Query:   250 PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI- 308
             P  D +++K +L  + DE  +K+LKNC+K+LP+ GK++ + +  P+  EN   +  I+  
Sbjct:   266 PTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVVVIELVTPDEAENGDINANIAFD 325

Query:   309 LDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
             +D +   Q   G+ER++ E+  LA  +GF    +   A + +++EF K
Sbjct:   326 MDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFCK 373

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA;IDA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042343 "indole glucosinolate metabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 135/362 (37%), Positives = 198/362 (54%)

Query:     6 DQEEETNNFSYAME-LAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKD 64
             +QE +    S   E +   +  P  + A  EL V + I+ AG    LS  EI   +P K 
Sbjct:    21 EQEVDEKMVSLQAESIVNTVAFPMVLKAAFELGVIDTIAAAGNDTWLSPCEIACSLPTKP 80

Query:    65 NNPEAAAMMLDRVLRLLVSYNALHCSFVD-GQ--------RLYSLASVAKYFVRNNQNGA 115
              NPEA  ++LDR+L LLVS++ L C  ++ G+        R+Y+   V KYF+R++    
Sbjct:    81 TNPEAP-VLLDRMLSLLVSHSILKCRMIETGENGRTGKIERVYAAEPVCKYFLRDSDGTG 139

Query:   116 SLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLG 175
             SL P   L   +V    W  LKD ILEG  AFN AHGM I++Y+  D  F ++FN  M  
Sbjct:   140 SLVPLFMLLHTQVFFKTWTNLKDVILEGRDAFNSAHGMKIFEYINSDQPFAELFNRAMSE 199

Query:   176 HTCVVMEKVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSY 235
              + ++M+KVL+ Y+GFE               L ++ SKYP IKG+N+DL  V+  AP Y
Sbjct:   200 PSTMIMKKVLDVYRGFEDVNTLVDVGGGNGTVLGLVTSKYPHIKGVNFDLAQVLTQAPFY 259

Query:   236 LGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295
              G+EHV GD F  VP+ D + MKW+L  + DE  +K+LKNC+K+LP+ GK++ V    P+
Sbjct:   260 PGVEHVSGDMFVEVPKGDAVFMKWILHDWGDEDCIKILKNCWKSLPEKGKIIIVEFVTPK 319

Query:   296 VPENS-ATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEF 354
              P+    +S  +  +D + L Q   G+ER+  ++  LA  +GF        A +  V+EF
Sbjct:   320 EPKGGDLSSNTVFAMDLLMLTQCSGGKERSLSQFENLAFASGFLRCEIICLAYSYSVIEF 379

Query:   355 LK 356
              K
Sbjct:   380 HK 381

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2199587 IGMT2 "indole glucosinolate O-methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 131/348 (37%), Positives = 205/348 (58%)

Query:    17 AMELAGAIVLPAAMHAVVELDVFEII-SKAG-AGAKLSVAEIVAQIPLKDNNPEAAAMML 74
             A+ LA A   P  + A +EL VF+ + ++A    + LS +EI +++P    NP  A ++L
Sbjct:    29 AVRLANAAAFPMVLKASLELGVFDTLYAEASRTDSFLSPSEIASKLPTTPRNP-GAPVLL 87

Query:    75 DRVLRLLVSYNALHCSFVD---GQRLYSLASVAKYFVRNN-QNGASLRPYMALRLDKVPM 130
             DR+LRLL SY+ + C  V    G+R+Y    + ++F++NN Q+  SL   + +  D V +
Sbjct:    88 DRMLRLLASYSMVKCEKVSVGKGERVYRAEPICRFFLKNNIQDIGSLASQVIVNFDSVFL 147

Query:   131 DYWFRLKDQILEGGTAFNKAHG-MSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYK 189
             + W +LKD +LEGG AF +AHG M ++DYMG D RF+ +FN    G T  V++K LE Y+
Sbjct:   148 NTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFN--QTGFTIAVVKKALEVYQ 205

Query:   190 GFEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESV 249
             GF+              TL ++ SKYP IKGIN+DL   +  APSY G+EHV GD F  V
Sbjct:   206 GFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTCALAQAPSYPGVEHVAGDMFVDV 265

Query:   250 PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI- 308
             P  D +++K +L  + DE  +K+LKNC+K+LP+ GK++ + +  P+  EN   +  I+  
Sbjct:   266 PTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVVVIELVTPDEAENGDINANIAFD 325

Query:   309 LDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
             +D +   Q   G+ER++ E+  LA  + F    +   A + +++EF K
Sbjct:   326 MDMLMFTQCSGGKERSRAEFEALAAASCFTHCKFVCQAYHCWIIEFCK 373

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA;IDA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042343 "indole glucosinolate metabolic process" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 136/360 (37%), Positives = 210/360 (58%)

Query:     3 SMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGA-GAKLSVAEIVAQIP 61
             S    EEE  +   A++L G   +P  +    ELD+FEI++KA   G+ LS  ++ +   
Sbjct:     7 SGGSSEEE--DMLLAIQLGGLNFVPYIVKTARELDLFEIMAKARPLGSYLSPVDLASMAA 64

Query:    62 LKDNNPEAAAMMLDRVLRLLVSYNALHCSFV---DGQ--RLYSLASVAKYFVRNNQNGAS 116
              K  NP A  MM+DR+LR LV+Y+   C  V   +G+  R Y L  V K  +++ ++G S
Sbjct:    65 PK--NPHAP-MMIDRLLRFLVAYSVCTCKLVKDEEGRESRAYGLGKVGKKLIKD-EDGFS 120

Query:   117 LRPYMALRLDKVPMDYWFRLKDQILEGG-TAFNKAHGMSIYDYMGVDSRFNDVFNTGMLG 175
             + PY+     K     W  L + I EGG +A+ +A+   I++YM  +     +FN  M  
Sbjct:   121 IAPYVLAGCTKAKGGVWSYLTEAIQEGGASAWERANEALIFEYMKKNENLKKIFNESMTN 180

Query:   176 HTCVVMEKVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSY 235
             HT +VM+K+LE+Y GFE             + L  I+SKYP IKGIN+DLP+++K AP  
Sbjct:   181 HTSIVMKKILENYIGFEGVSDFVDVGGSLGSNLAQILSKYPHIKGINFDLPHIVKEAPQI 240

Query:   236 LGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP- 294
              G+EH+GGD F+ +P  + ILMKW+L  ++DE+ +++LKNC KALP+ G+++ + + +P 
Sbjct:   241 HGVEHIGGDMFDEIPRGEVILMKWILHDWNDEKCVEILKNCKKALPETGRIIVIEMIVPR 300

Query:   295 EVPENS-ATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVME 353
             EV E   AT   +S  D   +     G+ERTK+E+ +LA +AGFK     YGA + +++E
Sbjct:   301 EVSETDLATKNSLSA-DLTMMSLTSGGKERTKKEFEDLAKEAGFKLPKIIYGAYSYWIIE 359

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43609	COMT1_PRUDU	2, ., 1, ., 1, ., 6, 8	0.5069	0.9831	0.9589	N/A	no
Q00763	COMT1_POPTM	2, ., 1, ., 1, ., 6, 8	0.5057	0.9466	0.9232	N/A	no
Q6ZD89	OMT1_ORYSJ	2, ., 1, ., 1, ., 7, 6	0.4277	0.9494	0.9184	yes	no
Q43046	COMT1_POPKI	2, ., 1, ., 1, ., 6, 8	0.5086	0.9466	0.9232	N/A	no
A9X7L0	ANMT_RUTGR	2, ., 1, ., 1, ., 1, 1, 1	0.5404	0.9522	0.9313	N/A	no
O23760	COMT1_CLABR	2, ., 1, ., 1, ., 6, 8	0.5139	0.9662	0.9297	N/A	no
Q9FK25	OMT1_ARATH	2, ., 1, ., 1, ., 7, 6	0.4913	0.9410	0.9228	yes	no
P28002	COMT1_MEDSA	2, ., 1, ., 1, ., 6, 8	0.5141	0.9634	0.9397	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: COMT4 SubName- Full=Putative uncharacterized protein; (358 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	1e-93
pfam08100	50	pfam08100, Dimerisation, Dimerisation domain	2e-10
TIGR02716	306	TIGR02716, C20_methyl_CrtF, C-20 methyltransferase	7e-06
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	1e-04
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	0.001

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  279 bits (715), Expect = 1e-93
 Identities = 107/240 (44%), Positives = 149/240 (62%), Gaps = 3/240 (1%)

Query: 93  DGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHG 152
            G   Y L   +K  V+   +  SL P + +  D   ++ W  LKD + EGG  F +A G
Sbjct: 2   RGGEDYGLTPASKLLVKGE-DSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAFG 60

Query: 153 MSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMII 212
           M  ++Y+G D  FN VFN  M  H+ +VM+K+LE+   F  +  LVDVGGG GA    I+
Sbjct: 61  MPFFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIV 120

Query: 213 SKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKL 272
             YP IKGI +DLP+VI +APS   +E VGGDFFESVPEAD IL+KWVL  + DE  +K+
Sbjct: 121 RAYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKI 180

Query: 273 LKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA 332
           LK CY+ALP GGK++ V + +PE P++   + E+ +LD   L     G+ERT++E+ +L 
Sbjct: 181 LKRCYEALPPGGKVIVVEMVLPEDPDDDLET-EVLLLDLNMLVLNG-GKERTEKEWRKLL 238

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 5/54 (9%)

Query: 29 AMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLV 82
           +   +EL + +II  A  G  LS +E+ +++P    NPE A +MLDR+LRLL 
Sbjct: 2  VLKCAIELGIPDII--AKHGKPLSPSELASKLPTV--NPE-APVMLDRLLRLLA 50

This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50

>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU

 Score = 47.0 bits (111), Expect = 7e-06
 Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 8/110 (7%)

Query: 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLG-------IEHVGGDFF 246
           VKK++DVGGG+G     ++  +P +     +LP  I               +  +  D +
Sbjct: 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIY 209

Query: 247 -ESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295
            ES PEAD +L   +L S +++ S  + K  + A+  GG+LL +++ I +
Sbjct: 210 KESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 259

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 198 VDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLG---------IEHVGGDFFE 247
           +D+G G G  L  ++   P ++    D+ P  ++ A   L          +     D  +
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 248 SVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKL 286
             P + D ++   VL    D +   +L+N  + L  GG L
Sbjct: 61  LDPGSFDVVVASNVLHHLADPR--AVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 29/146 (19%), Positives = 54/146 (36%), Gaps = 15/146 (10%)

Query: 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADT 254
            +++D+G G G  L ++  +   + G++     V+  +        V    +      D 
Sbjct: 24  GRVLDIGCGTGILLRLLRERGFDVTGVDPSPAAVLIFSLFDAPDPAVLAGKY------DL 77

Query: 255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICL 314
           I    VL    D     LL+   + L  GG LL   ++ P   +++        L     
Sbjct: 78  ITAFEVLEHLPD--PPALLQQLRELLKPGGVLL---ISTPLADDDARLFANWHYLR---- 128

Query: 315 FQVPHGRERTKQEYSELAIKAGFKGV 340
            +  H    +++    L  KAGF+ V
Sbjct: 129 PRNTHISFYSEESLKRLLEKAGFELV 154

This family appears to be a methyltransferase domain. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	100.0
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	100.0
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.82
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.78
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.78
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.78
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.76
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.76
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.75
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.74
PLN02244	340	tocopherol O-methyltransferase	99.72
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.71
PLN02490	340	MPBQ/MSBQ methyltransferase	99.69
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.69
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.67
PLN02336	475	phosphoethanolamine N-methyltransferase	99.67
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.67
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.67
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.66
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.65
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.65
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.64
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.64
PRK11207	197	tellurite resistance protein TehB; Provisional	99.64
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.63
PRK08317	241	hypothetical protein; Provisional	99.62
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.62
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.62
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.61
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.58
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.58
PRK06922	677	hypothetical protein; Provisional	99.58
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.58
PRK05785	226	hypothetical protein; Provisional	99.57
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.56
PRK06202	232	hypothetical protein; Provisional	99.55
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.54
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.54
KOG4300	252	consensus Predicted methyltransferase [General fun	99.54
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.54
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.53
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.53
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.51
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.51
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.5
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.49
PLN02336	475	phosphoethanolamine N-methyltransferase	99.49
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.48
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.48
PRK04266	226	fibrillarin; Provisional	99.47
PRK12335	287	tellurite resistance protein TehB; Provisional	99.46
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.46
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.45
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.44
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.44
KOG2361	264	consensus Predicted methyltransferase [General fun	99.42
TIGR03438	301	probable methyltransferase. This model represents	99.42
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.41
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.41
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.38
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.38
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.37
PLN03075	296	nicotianamine synthase; Provisional	99.37
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.35
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.35
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.3
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.29
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.28
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.28
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.27
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.27
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.24
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.24
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.23
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.22
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.22
PTZ00146	293	fibrillarin; Provisional	99.2
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.2
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.19
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.18
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.18
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.16
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.16
PRK14968	188	putative methyltransferase; Provisional	99.14
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.13
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.13
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.13
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.12
COG4123	248	Predicted O-methyltransferase [General function pr	99.12
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.12
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.09
PHA03411	279	putative methyltransferase; Provisional	99.09
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.09
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.07
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.04
PRK07402	196	precorrin-6B methylase; Provisional	99.01
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	99.01
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.01
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.01
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.0
PRK14967	223	putative methyltransferase; Provisional	99.0
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.99
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.97
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.97
PRK04457	262	spermidine synthase; Provisional	98.96
TIGR00438	188	rrmJ cell division protein FtsJ.	98.96
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.95
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.95
KOG1271	227	consensus Methyltransferases [General function pre	98.93
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.92
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.92
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.91
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.88
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.88
KOG2899	288	consensus Predicted methyltransferase [General fun	98.88
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.88
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.87
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.87
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.85
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.84
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.84
PRK00811	283	spermidine synthase; Provisional	98.83
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	98.81
COG2890	280	HemK Methylase of polypeptide chain release factor	98.8
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.79
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.77
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.76
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.74
PRK01581	374	speE spermidine synthase; Validated	98.72
KOG3010	261	consensus Methyltransferase [General function pred	98.72
PLN02366	308	spermidine synthase	98.72
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.72
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.71
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.67
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.65
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.64
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.63
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.61
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.59
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.55
PLN02672	1082	methionine S-methyltransferase	98.55
PRK03612	521	spermidine synthase; Provisional	98.55
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.54
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.53
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.52
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.52
PHA03412	241	putative methyltransferase; Provisional	98.52
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.51
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.48
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.43
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.42
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.42
COG4122	219	Predicted O-methyltransferase [General function pr	98.37
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.36
PLN02476	278	O-methyltransferase	98.35
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.34
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.34
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.34
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.32
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.31
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.29
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.27
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.26
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.24
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.23
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.22
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.22
PLN02823	336	spermine synthase	98.18
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.18
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.15
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.13
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.12
KOG2940	325	consensus Predicted methyltransferase [General fun	98.12
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.12
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.09
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.07
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.05
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.04
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.04
PRK00536	262	speE spermidine synthase; Provisional	98.03
KOG1331	293	consensus Predicted methyltransferase [General fun	98.03
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.98
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.93
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.93
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.93
PRK04148	134	hypothetical protein; Provisional	97.92
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.91
COG2521	287	Predicted archaeal methyltransferase [General func	97.91
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.91
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.87
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.83
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.82
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.81
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.71
KOG2904	328	consensus Predicted methyltransferase [General fun	97.69
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.67
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.65
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.64
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.61
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.61
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.59
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.58
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.56
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.55
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.55
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.52
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.49
COG4798	238	Predicted methyltransferase [General function pred	97.47
PF13679	141	Methyltransf_32: Methyltransferase domain	97.35
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	97.3
COG4076	252	Predicted RNA methylase [General function predicti	97.29
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.29
KOG3115	249	consensus Methyltransferase-like protein [General	97.28
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.28
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.24
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.22
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.2
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.15
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.12
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.1
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.06
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	97.02
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	96.89
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	96.89
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	96.86
KOG3201	201	consensus Uncharacterized conserved protein [Funct	96.82
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.79
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	96.75
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.74
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	96.74
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.73
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	96.71
PRK10141	117	DNA-binding transcriptional repressor ArsR; Provis	96.65
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.61
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	96.58
COG3897	218	Predicted methyltransferase [General function pred	96.47
PF13601	80	HTH_34: Winged helix DNA-binding domain; PDB: 1UB9	96.46
COG3315	297	O-Methyltransferase involved in polyketide biosynt	96.42
PF01022	47	HTH_5: Bacterial regulatory protein, arsR family;	96.42
PF13463	68	HTH_27: Winged helix DNA-binding domain; PDB: 3GFL	96.42
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	96.39
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.39
PF14947	77	HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_	96.31
COG4301	321	Uncharacterized conserved protein [Function unknow	96.3
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.27
PHA00738	108	putative HTH transcription regulator	96.24
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	96.23
PF02082	83	Rrf2: Transcriptional regulator; InterPro: IPR0009	96.23
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	96.21
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	96.18
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.13
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	96.12
COG1414	246	IclR Transcriptional regulator [Transcription]	96.11
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.1
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.05
PRK11050	152	manganese transport regulator MntR; Provisional	96.05
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.04
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	95.99
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.98
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	95.94
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	95.93
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	95.86
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	95.84
cd00092	67	HTH_CRP helix_turn_helix, cAMP Regulatory protein	95.69
COG1041	347	Predicted DNA modification methylase [DNA replicat	95.68
COG2520	341	Predicted methyltransferase [General function pred	95.64
COG2345	218	Predicted transcriptional regulator [Transcription	95.64
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	95.63
PRK11569	274	transcriptional repressor IclR; Provisional	95.62
PRK15090	257	DNA-binding transcriptional regulator KdgR; Provis	95.61
COG1959	150	Predicted transcriptional regulator [Transcription	95.57
PF01638	90	HxlR: HxlR-like helix-turn-helix; InterPro: IPR002	95.54
PRK09834	263	DNA-binding transcriptional activator MhpR; Provis	95.54
TIGR02431	248	pcaR_pcaU beta-ketoadipate pathway transcriptional	95.5
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.46
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	95.45
PRK10163	271	DNA-binding transcriptional repressor AllR; Provis	95.45
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	95.43
PRK11512	144	DNA-binding transcriptional repressor MarR; Provis	95.43
COG3355	126	Predicted transcriptional regulator [Transcription	95.34
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	95.29
TIGR02337	118	HpaR homoprotocatechuate degradation operon regula	95.28
PF01047	59	MarR: MarR family; InterPro: IPR000835 The MarR-ty	95.21
PF12802	62	MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP	95.09
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	95.08
smart00418	66	HTH_ARSR helix_turn_helix, Arsenical Resistance Op	95.07
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.03
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	95.03
smart00419	48	HTH_CRP helix_turn_helix, cAMP Regulatory protein.	95.0
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	94.99
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	94.97
TIGR02010	135	IscR iron-sulfur cluster assembly transcription fa	94.96
PRK03902	142	manganese transport transcriptional regulator; Pro	94.93
COG2265	432	TrmA SAM-dependent methyltransferases related to t	94.93
TIGR02702	203	SufR_cyano iron-sulfur cluster biosynthesis transc	94.92
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	94.83
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.75
PRK06266	178	transcription initiation factor E subunit alpha; V	94.7
COG4742	260	Predicted transcriptional regulator [Transcription	94.63
TIGR00738	132	rrf2_super rrf2 family protein (putative transcrip	94.61
cd00090	78	HTH_ARSR Arsenical Resistance Operon Repressor and	94.6
PRK10857	164	DNA-binding transcriptional regulator IscR; Provis	94.56
KOG3924	419	consensus Putative protein methyltransferase invol	94.56
PF04967	53	HTH_10: HTH DNA binding domain; InterPro: IPR00705	94.54
PF07381	90	DUF1495: Winged helix DNA-binding domain (DUF1495)	94.43
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	94.24
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	94.22
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	94.07
PRK11920	153	rirA iron-responsive transcriptional regulator; Re	93.89
smart00347	101	HTH_MARR helix_turn_helix multiple antibiotic resi	93.85
PRK11014	141	transcriptional repressor NsrR; Provisional	93.76
TIGR01884	203	cas_HTH CRISPR locus-related DNA-binding protein.	93.61
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	93.5
PF08461	66	HTH_12: Ribonuclease R winged-helix domain; InterP	93.49
TIGR02944	130	suf_reg_Xantho FeS assembly SUF system regulator,	93.42
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	93.36
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	93.34
KOG2352	482	consensus Predicted spermine/spermidine synthase [	93.29
COG1321	154	TroR Mn-dependent transcriptional regulator [Trans	93.23
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	93.16
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	93.0
TIGR01889	109	Staph_reg_Sar staphylococcal accessory regulator f	92.91
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	92.89
PRK14165	217	winged helix-turn-helix domain-containing protein/	92.82
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	92.78
PRK03573	144	transcriptional regulator SlyA; Provisional	92.75
PF01325	60	Fe_dep_repress: Iron dependent repressor, N-termin	92.71
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	92.64
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	92.58
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	92.52
smart00420	53	HTH_DEOR helix_turn_helix, Deoxyribose operon repr	92.48
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	92.29
COG0742	187	N6-adenine-specific methylase [DNA replication, re	92.17
PHA02943	165	hypothetical protein; Provisional	92.12
KOG4058	199	consensus Uncharacterized conserved protein [Funct	92.09
TIGR00122	69	birA_repr_reg BirA biotin operon repressor domain.	92.08
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	92.04
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	91.88
COG4189	308	Predicted transcriptional regulator [Transcription	91.67
KOG2730	263	consensus Methylase [General function prediction o	91.66
smart00344	108	HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto	91.65
smart00529	96	HTH_DTXR Helix-turn-helix diphteria tox regulatory	91.63
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	91.41
smart00345	60	HTH_GNTR helix_turn_helix gluconate operon transcr	91.09
PF00325	32	Crp: Bacterial regulatory proteins, crp family; In	90.96
PF07109	97	Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl	90.92
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	90.5
TIGR01610	95	phage_O_Nterm phage replication protein O, N-termi	90.31
PRK10870	176	transcriptional repressor MprA; Provisional	90.14
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	90.08
cd07377	66	WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi	89.97
PRK04172	489	pheS phenylalanyl-tRNA synthetase subunit alpha; P	89.75
COG3432	95	Predicted transcriptional regulator [Transcription	89.63
COG4190	144	Predicted transcriptional regulator [Transcription	89.32
PF00392	64	GntR: Bacterial regulatory proteins, gntR family;	89.25
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	89.05
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	88.96
PF03444	78	HrcA_DNA-bdg: Winged helix-turn-helix transcriptio	88.93
COG2933	358	Predicted SAM-dependent methyltransferase [General	88.79
PRK06474	178	hypothetical protein; Provisional	88.48
PRK15431	78	ferrous iron transport protein FeoC; Provisional	88.39
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	88.03
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	87.89
PF01726	65	LexA_DNA_bind: LexA DNA binding domain; InterPro:	87.7
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	87.67
PLN02853	492	Probable phenylalanyl-tRNA synthetase alpha chain	87.62
COG1846	126	MarR Transcriptional regulators [Transcription]	87.56
cd07153	116	Fur_like Ferric uptake regulator(Fur) and related	87.43
COG1733	120	Predicted transcriptional regulators [Transcriptio	87.07
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	86.82
PF02002	105	TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024	86.79
PRK05638	442	threonine synthase; Validated	86.77
PRK13777	185	transcriptional regulator Hpr; Provisional	86.68
COG2512	258	Predicted membrane-associated trancriptional regul	86.43
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	86.32
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	85.83
PF10007	92	DUF2250: Uncharacterized protein conserved in arch	85.52
PRK11179	153	DNA-binding transcriptional regulator AsnC; Provis	85.44
PRK10742	250	putative methyltransferase; Provisional	85.05
COG4565	224	CitB Response regulator of citrate/malate metaboli	85.02
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	84.9
PF13730	55	HTH_36: Helix-turn-helix domain	84.84
PF08784	102	RPA_C: Replication protein A C terminal; InterPro:	84.75
COG1378	247	Predicted transcriptional regulators [Transcriptio	84.57
COG1497	260	Predicted transcriptional regulator [Transcription	84.49
PF14394	171	DUF4423: Domain of unknown function (DUF4423)	84.34
PTZ00326	494	phenylalanyl-tRNA synthetase alpha chain; Provisio	84.18
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	84.03
PRK11169	164	leucine-responsive transcriptional regulator; Prov	83.61
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	83.52
PF13384	50	HTH_23: Homeodomain-like domain; PDB: 2X48_C.	83.46
TIGR01321	94	TrpR trp operon repressor, proteobacterial. This m	83.28
PF07789	155	DUF1627: Protein of unknown function (DUF1627); In	83.17
PF05732	165	RepL: Firmicute plasmid replication protein (RepL)	82.97
PRK04214	412	rbn ribonuclease BN/unknown domain fusion protein;	82.81
PF12793	115	SgrR_N: Sugar transport-related sRNA regulator N-t	82.69
PF13545	76	HTH_Crp_2: Crp-like helix-turn-helix domain; PDB:	82.64
COG1510	177	Predicted transcriptional regulators [Transcriptio	82.54
COG1522	154	Lrp Transcriptional regulators [Transcription]	82.53
PF08221	62	HTH_9: RNA polymerase III subunit RPC82 helix-turn	82.46
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	82.4
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	82.39
COG3413	215	Predicted DNA binding protein [General function pr	81.89
PRK13699	227	putative methylase; Provisional	80.89
PF13518	52	HTH_28: Helix-turn-helix domain	80.44
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	80.38
PRK09775	442	putative DNA-binding transcriptional regulator; Pr	80.06

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=100.00  E-value=1.5e-45  Score=324.51  Aligned_cols=338  Identities=45%  Similarity=0.760  Sum_probs=297.1

Q ss_pred             HhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           10 ETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +.+..-++++++.++..+++|++|++||+||.|.+.+   +  ..|||..+.. +-+|+.|. .+.|+||.|++.++++.
T Consensus         3 e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~---~--p~~ia~~l~~-~~~~~~p~-ll~r~lr~L~s~~i~k~   75 (342)
T KOG3178|consen    3 ENEASLRAMRLANGFALPMVLKAACELGVFDILANAG---S--PSEIASLLPT-PKNPEAPV-LLDRILRLLVSYSILKC   75 (342)
T ss_pred             hhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC---C--HHHHHHhccC-CCCCCChh-HHHHHHHHHHHhhhcee
Confidence            3455678899999999999999999999999999953   2  8888888775 22566688 99999999999999997


Q ss_pred             eeeCCCcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHH
Q 018405           90 SFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVF  169 (356)
Q Consensus        90 ~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  169 (356)
                      .....+ .|++++.++++..++ +..++..++...+.++..+.|..+.++++.++.++..++|...++|...+......+
T Consensus        76 ~~~~~~-~Y~~~~~~~~~l~~~-~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~  153 (342)
T KOG3178|consen   76 RLVGGE-VYSATPVCKYFLKDS-GGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDF  153 (342)
T ss_pred             eeecce-eeeccchhhhheecC-CCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHH
Confidence            543333 899999999666444 246888888888889999999999999999999998899988899988888888899


Q ss_pred             HHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-CCceEEEccCCCC
Q 018405          170 NTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-LGIEHVGGDFFES  248 (356)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~v~~~~~D~~~~  248 (356)
                      +++|...+......+++.+.+|+.....+|||+|.|..+..++..||+++++.+|+|.+++.+... ++|+.+.+|++.+
T Consensus       154 ~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~  233 (342)
T KOG3178|consen  154 NGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD  233 (342)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccccc
Confidence            999999998888888888887888999999999999999999999999999999999999999888 8899999999999


Q ss_pred             CCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC-CCCCchhhhhhhhhhhhhhhhcCCCccCCHHH
Q 018405          249 VPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE-VPENSATSREISILDTICLFQVPHGRERTKQE  327 (356)
Q Consensus       249 ~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e  327 (356)
                      .|.+|+|++.++||||+|++|.++|++|++.|+|||+++++|.+.++ .............+|+.|+.++.+|+.|+.+|
T Consensus       234 ~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e  313 (342)
T KOG3178|consen  234 TPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKE  313 (342)
T ss_pred             CCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHH
Confidence            99999999999999999999999999999999999999999998875 22222223445667888888876799999999


Q ss_pred             HHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          328 YSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       328 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      ++.++.++||.+..+...+..+++||++|
T Consensus       314 ~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k  342 (342)
T KOG3178|consen  314 FQALLPEEGFPVCMVALTAYSYSVIEFHK  342 (342)
T ss_pred             HHhcchhhcCceeEEEeccCccchheeCC
Confidence            99999999999999999999999999987

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=100.00  E-value=3.2e-38  Score=287.39  Aligned_cols=290  Identities=21%  Similarity=0.335  Sum_probs=209.3

Q ss_pred             HHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405           26 LPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK  105 (356)
Q Consensus        26 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~  105 (356)
                      ...+|++|++|||||.|.+    ||.|++|||+++|++      ++ .++|||++|++.|+++   ++ +++|++|+.+.
T Consensus         3 ~~~~l~aa~~Lglfd~L~~----gp~t~~eLA~~~~~~------~~-~~~~lL~~L~~lgll~---~~-~~~y~~t~~~~   67 (306)
T TIGR02716         3 EFSCMKAAIELDLFSHMAE----GPKDLATLAADTGSV------PP-RLEMLLETLRQMRVIN---LE-DGKWSLTEFAD   67 (306)
T ss_pred             hHHHHHHHHHcCcHHHHhc----CCCCHHHHHHHcCCC------hH-HHHHHHHHHHhCCCeE---ec-CCcEecchhHH
Confidence            4578999999999999987    599999999999997      88 9999999999999999   34 48999999998


Q ss_pred             HhhhCCCCCC---ChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHHHHh-hhhHHHH
Q 018405          106 YFVRNNQNGA---SLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGML-GHTCVVM  181 (356)
Q Consensus       106 ~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  181 (356)
                      .+..++ ++.   ++.++..+.. ......|.+|.+.+++ +++|...++     +....+.. ..|...|. .......
T Consensus        68 ~~l~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~r~-~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~  138 (306)
T TIGR02716        68 YMFSPT-PKEPNLHQTPVAKAMA-FLADDFYMGLSQAVRG-QKNFKGQVP-----YPPVTRED-NLYFEEIHRSNAKFAI  138 (306)
T ss_pred             hhccCC-ccchhhhcCchHHHHH-HHHHHHHHhHHHHhcC-CcccccccC-----CCCCCHHH-HHhHHHHHHhcchhHH
Confidence            555444 121   1122222221 1223568899999884 444432221     11111222 23333343 3333445


Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCCCCc
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVPEAD  253 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~D  253 (356)
                      +.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++       +|++++.+|+++ ++|.+|
T Consensus       139 ~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D  217 (306)
T TIGR02716       139 QLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEAD  217 (306)
T ss_pred             HHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCC
Confidence            56677666 888899999999999999999999999999999998888776532       579999999997 667679


Q ss_pred             EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh-hhhhhhhhcCCCccCCHHHHHHHH
Q 018405          254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI-LDTICLFQVPHGRERTKQEYSELA  332 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~t~~e~~~ll  332 (356)
                      +|++++++|+|+++++.++|++++++|+|||+++|.|.+.++.... ........ ....+.. . -...++.++|.++|
T Consensus       218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~e~~~ll  294 (306)
T TIGR02716       218 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENP-NFDYLSHYILGAGMPF-S-VLGFKEQARYKEIL  294 (306)
T ss_pred             EEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-hhhHHHHHHHHccccc-c-cccCCCHHHHHHHH
Confidence            9999999999999889999999999999999999999887654322 11111111 1111111 0 11234689999999


Q ss_pred             HHcCCcceeEE
Q 018405          333 IKAGFKGVNYE  343 (356)
Q Consensus       333 ~~aGf~~~~~~  343 (356)
                      +++||+.++++
T Consensus       295 ~~aGf~~v~~~  305 (306)
T TIGR02716       295 ESLGYKDVTMV  305 (306)
T ss_pred             HHcCCCeeEec
Confidence            99999988754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=100.00  E-value=7.3e-39  Score=282.04  Aligned_cols=236  Identities=30%  Similarity=0.563  Sum_probs=203.2

Q ss_pred             CcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHHHHh
Q 018405           95 QRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGML  174 (356)
Q Consensus        95 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  174 (356)
                      +++|++|+.++.|..++ ++.++..++.+...+.++..|.+|.+++++|.++|+..+|.++|+++.++++..+.|+.+|.
T Consensus         3 ~~~y~~t~~s~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~   81 (241)
T PF00891_consen    3 GDRYSLTPLSELLLSDH-SSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMA   81 (241)
T ss_dssp             TEEEEE-HHHHGGSTTT-TTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred             CCEEeChHHHHHHhCCC-CcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence            48999999999777666 23467777777667888999999999999999999999998899999999999999999999


Q ss_pred             hhhHHHH-HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCCCCCc
Q 018405          175 GHTCVVM-EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEAD  253 (356)
Q Consensus       175 ~~~~~~~-~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~~D  253 (356)
                      ..+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+||+++.||+++++|.+|
T Consensus        82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D  160 (241)
T PF00891_consen   82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD  160 (241)
T ss_dssp             HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred             hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence            8888777 77777777 999999999999999999999999999999999999999988888999999999999888899


Q ss_pred             EEEecccccCCChHHHHHHHHHHHHhCCCC--CEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405          254 TILMKWVLSSFDDEQSLKLLKNCYKALPDG--GKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL  331 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pg--G~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  331 (356)
                      +|+++++||+|+|+++.++|++++++|+||  |+|+|+|.+.++.............+|+.|+..+ +|+.||.+||.+|
T Consensus       161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~l  239 (241)
T PF00891_consen  161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEAL  239 (241)
T ss_dssp             EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHH
T ss_pred             ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHH
Confidence            999999999999999999999999999999  9999999999887655433323357899999887 6999999999999


Q ss_pred             HH
Q 018405          332 AI  333 (356)
Q Consensus       332 l~  333 (356)
                      |+
T Consensus       240 l~  241 (241)
T PF00891_consen  240 LK  241 (241)
T ss_dssp             HH
T ss_pred             hC
Confidence            85

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.82  E-value=4.9e-19  Score=151.92  Aligned_cols=160  Identities=23%  Similarity=0.303  Sum_probs=123.0

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC--cEEEeccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA--DTILMKWV  260 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~v  260 (356)
                      ..++.+|||||||||..+..+++..+..+++++|. +.|++.++++      ..++|+.+|..+ |+|++  |+|++++.
T Consensus        49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg  128 (238)
T COG2226          49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG  128 (238)
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence            44789999999999999999999999999999996 9999998765      238999999999 99986  99999999


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhh-hhhhc---CC-------------CccC
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTI-CLFQV---PH-------------GRER  323 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~-------------~~~~  323 (356)
                      |++++|  ..++|++++|+|||||+++++|...+......   .....+... .+...   ..             -..+
T Consensus       129 lrnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p  203 (238)
T COG2226         129 LRNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP  203 (238)
T ss_pred             hhcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence            999975  89999999999999999999999887653221   111112111 11111   00             1234


Q ss_pred             CHHHHHHHHHHcCCcceeEEEccCc-eeEEEEe
Q 018405          324 TKQEYSELAIKAGFKGVNYEYGACN-LYVMEFL  355 (356)
Q Consensus       324 t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~  355 (356)
                      +.+++.++++++||+.+.......+ ..+..++
T Consensus       204 ~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~  236 (238)
T COG2226         204 DQEELKQMIEKAGFEEVRYENLTFGIVALHRGY  236 (238)
T ss_pred             CHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEe
Confidence            7899999999999999886555443 3344443

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.78  E-value=1.3e-17  Score=147.95  Aligned_cols=160  Identities=20%  Similarity=0.225  Sum_probs=117.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC---------CCceEEEccCCC-CCCCC--cEEE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY---------LGIEHVGGDFFE-SVPEA--DTIL  256 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~~~~--D~i~  256 (356)
                      ..+..+|||||||+|.++..+++.+ |+.+++++|. +.+++.|+++         ++++++.+|+.+ |++++  |+|+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            5677899999999999999998875 6679999996 8888877532         478999999988 77764  9999


Q ss_pred             ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh-hhh--hhhhh-cCC-----------Cc
Q 018405          257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI-LDT--ICLFQ-VPH-----------GR  321 (356)
Q Consensus       257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~~~-----------~~  321 (356)
                      +..++|++++  ..++|++++++|||||++++.|...++..-   ......+ +..  ..... ...           ..
T Consensus       151 ~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~  225 (261)
T PLN02233        151 MGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPF---TTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE  225 (261)
T ss_pred             EecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHH---HHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence            9999999965  789999999999999999999987654311   0111000 000  00000 000           22


Q ss_pred             cCCHHHHHHHHHHcCCcceeEEEccCc-eeEEEEe
Q 018405          322 ERTKQEYSELAIKAGFKGVNYEYGACN-LYVMEFL  355 (356)
Q Consensus       322 ~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~  355 (356)
                      .++++++.++++++||+.++......+ ..+..++
T Consensus       226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~  260 (261)
T PLN02233        226 YLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT  260 (261)
T ss_pred             cCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence            468999999999999999987776544 3354443

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.78  E-value=9.5e-20  Score=158.09  Aligned_cols=161  Identities=24%  Similarity=0.335  Sum_probs=81.9

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC--cEEEecc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA--DTILMKW  259 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~  259 (356)
                      ..++.+|||+|||||..+..+++.. |+.+++++|. +.+++.++++      .+|+++++|..+ |++++  |+|++++
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f  124 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF  124 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence            5677899999999999999999875 6789999996 9999888753      589999999999 88875  9999999


Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhh----cCC------------CccC
Q 018405          260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQ----VPH------------GRER  323 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------------~~~~  323 (356)
                      .+|+++|  ..+.|++++++|||||+++|+|...+..+   ........+-...+..    ..+            ....
T Consensus       125 glrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~---~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~  199 (233)
T PF01209_consen  125 GLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNP---LLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFP  199 (233)
T ss_dssp             -GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSH---HHHHHHHH-------------------------------
T ss_pred             hHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCc---hhhceeeeeeccccccccccccccccccccccccccccc
Confidence            9999976  68899999999999999999999887642   1111111100000000    000            1123


Q ss_pred             CHHHHHHHHHHcCCcceeEEEccC-ceeEEEEeC
Q 018405          324 TKQEYSELAIKAGFKGVNYEYGAC-NLYVMEFLK  356 (356)
Q Consensus       324 t~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~~  356 (356)
                      +.+++.++++++||+.++..+... ..+++.++|
T Consensus       200 ~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K  233 (233)
T PF01209_consen  200 SPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK  233 (233)
T ss_dssp             ----------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccCC
Confidence            789999999999999988877654 444655554

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR00740 methyltransferase, putative

Probab=99.78  E-value=1e-18  Score=153.67  Aligned_cols=162  Identities=16%  Similarity=0.160  Sum_probs=118.6

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhC--CCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCCcEEEeccc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKY--PRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEADTILMKWV  260 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~D~i~~~~v  260 (356)
                      .+..+|||||||+|..+..+++.+  |+.+++++|. +.+++.++++       .+++++.+|+.+ +.+..|+|++..+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~  131 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT  131 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence            466799999999999999999864  7899999997 8888877543       368999999988 6666799999999


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhh--------------hhcCCCccCCHH
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICL--------------FQVPHGRERTKQ  326 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~t~~  326 (356)
                      +||+++++...+|++++++|+|||.+++.|.+..++.....  ........+..              .........|.+
T Consensus       132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~  209 (239)
T TIGR00740       132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH--LLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIE  209 (239)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHH
Confidence            99999888899999999999999999999987655422110  00000000000              000012346899


Q ss_pred             HHHHHHHHcCCcceeEEEccCceeEEEEe
Q 018405          327 EYSELAIKAGFKGVNYEYGACNLYVMEFL  355 (356)
Q Consensus       327 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~  355 (356)
                      ++.+++++|||+.+++......+.++.++
T Consensus       210 ~~~~~l~~aGF~~~~~~~~~~~~~~~~~~  238 (239)
T TIGR00740       210 THKARLKNVGFSHVELWFQCFNFGSLVAV  238 (239)
T ss_pred             HHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence            99999999999987765544444444333

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.76  E-value=2.3e-17  Score=146.56  Aligned_cols=156  Identities=22%  Similarity=0.282  Sum_probs=119.2

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC--
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA--  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~--  252 (356)
                      ...+++.+. +.+..+|||||||+|..+..+++.+ +.+++++|. +.+++.++++    +++.++.+|+.+ ++++.  
T Consensus        41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F  118 (263)
T PTZ00098         41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF  118 (263)
T ss_pred             HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence            356677676 7788999999999999999998765 678999996 7777766542    579999999987 67654  


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA  332 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll  332 (356)
                      |+|++..+++|++.++...+|++++++|+|||++++.+.........  .....   .  +.. .......+.+++.+++
T Consensus       119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~--~~~~~---~--~~~-~~~~~~~~~~~~~~~l  190 (263)
T PTZ00098        119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENW--DEEFK---A--YIK-KRKYTLIPIQEYGDLI  190 (263)
T ss_pred             EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCc--HHHHH---H--HHH-hcCCCCCCHHHHHHHH
Confidence            99999999999987678999999999999999999998866542111  11110   0  011 0122346899999999


Q ss_pred             HHcCCcceeEEEcc
Q 018405          333 IKAGFKGVNYEYGA  346 (356)
Q Consensus       333 ~~aGf~~~~~~~~~  346 (356)
                      +++||+++......
T Consensus       191 ~~aGF~~v~~~d~~  204 (263)
T PTZ00098        191 KSCNFQNVVAKDIS  204 (263)
T ss_pred             HHCCCCeeeEEeCc
Confidence            99999999887653

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.76  E-value=2.9e-18  Score=151.27  Aligned_cols=153  Identities=18%  Similarity=0.189  Sum_probs=113.2

Q ss_pred             CCCceEEEEcCCccHHHHHHHH--hCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCCcEEEeccc
Q 018405          192 EHVKKLVDVGGGLGATLNMIIS--KYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEADTILMKWV  260 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~D~i~~~~v  260 (356)
                      .+..+|||||||+|..+..+++  ..|+.+++++|. +.+++.++++       .+++++.+|+.+ +.+..|+|++..+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~  134 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT  134 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence            4668999999999999999888  458999999996 8898888653       379999999987 6666699999999


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhh--------hh----hcCC-CccCCHHH
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTIC--------LF----QVPH-GRERTKQE  327 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~~-~~~~t~~e  327 (356)
                      +|++++++...++++++++|+|||.+++.|.+..++...... ..........        ..    ...+ -...|.++
T Consensus       135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~  213 (247)
T PRK15451        135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET  213 (247)
T ss_pred             HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence            999988888999999999999999999999776544322110 0000000000        00    0000 11248999


Q ss_pred             HHHHHHHcCCcceeEEEc
Q 018405          328 YSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       328 ~~~ll~~aGf~~~~~~~~  345 (356)
                      ..++|++|||+.+.+..-
T Consensus       214 ~~~~L~~aGF~~v~~~~~  231 (247)
T PRK15451        214 HKARLHKAGFEHSELWFQ  231 (247)
T ss_pred             HHHHHHHcCchhHHHHHH
Confidence            999999999998765443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.75  E-value=3.2e-17  Score=143.51  Aligned_cols=167  Identities=17%  Similarity=0.226  Sum_probs=122.2

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC-
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA-  252 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~-  252 (356)
                      .++..+. +.+..+|||+|||+|..+..+++.+ |..+++++|. +.+++.+++.      ++++++.+|..+ +++.. 
T Consensus        36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  114 (231)
T TIGR02752        36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS  114 (231)
T ss_pred             HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence            4455555 6677899999999999999999886 6789999996 7877666532      578999999987 65543 


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh-hhh--h--------------hh
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI-LDT--I--------------CL  314 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~-~~~--~--------------~~  314 (356)
                       |+|++..++|++++  ..++|+++.+.|+|||++++.+...+...   ........ +..  .              .+
T Consensus       115 fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  189 (231)
T TIGR02752       115 FDYVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWL  189 (231)
T ss_pred             ccEEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHHHHHHH
Confidence             99999999999865  67999999999999999999887654321   00000000 000  0              00


Q ss_pred             hhcCCCccCCHHHHHHHHHHcCCcceeEEEcc-CceeEEEEeC
Q 018405          315 FQVPHGRERTKQEYSELAIKAGFKGVNYEYGA-CNLYVMEFLK  356 (356)
Q Consensus       315 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~  356 (356)
                      ... ....++.+++.++++++||+++++.+.. +..+++.++|
T Consensus       190 ~~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~  231 (231)
T TIGR02752       190 QES-TRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK  231 (231)
T ss_pred             HHH-HHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence            000 1123578999999999999999988876 6677887776

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.74  E-value=7.3e-17  Score=143.23  Aligned_cols=157  Identities=19%  Similarity=0.200  Sum_probs=111.4

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCC--CcEEEe
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPE--ADTILM  257 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~--~D~i~~  257 (356)
                      ...+++.++ ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. +++++.+|+.+..+.  .|+|++
T Consensus        18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v~~   95 (255)
T PRK14103         18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVVVS   95 (255)
T ss_pred             HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEEEE
Confidence            356677776 66789999999999999999999999999999997 8888888654 689999998763232  399999


Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhh---hhhhh-hhhhhcCCCccCCHHHHHHHHH
Q 018405          258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREI---SILDT-ICLFQVPHGRERTKQEYSELAI  333 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~t~~e~~~ll~  333 (356)
                      ..++||+++  ..++|++++++|+|||++++..+...............   .+... ............+.+++.++|+
T Consensus        96 ~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~  173 (255)
T PRK14103         96 NAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT  173 (255)
T ss_pred             ehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence            999999975  68999999999999999998643211110000000000   00000 0000001223468999999999


Q ss_pred             HcCCccee
Q 018405          334 KAGFKGVN  341 (356)
Q Consensus       334 ~aGf~~~~  341 (356)
                      ++||++..
T Consensus       174 ~aGf~v~~  181 (255)
T PRK14103        174 DAGCKVDA  181 (255)
T ss_pred             hCCCeEEE
Confidence            99998543

>PLN02244 tocopherol O-methyltransferase

Probab=99.72  E-value=2.4e-16  Score=145.22  Aligned_cols=161  Identities=20%  Similarity=0.263  Sum_probs=114.4

Q ss_pred             HHHHHHHhcCC-----CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC
Q 018405          181 MEKVLESYKGF-----EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE  247 (356)
Q Consensus       181 ~~~~~~~~~~~-----~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~  247 (356)
                      ...+++.+. +     .+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++.       ++++++.+|+.+
T Consensus       102 ~~~~l~~~~-~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~  179 (340)
T PLN02244        102 IEESLAWAG-VPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN  179 (340)
T ss_pred             HHHHHHhcC-CCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence            344555444 3     567899999999999999999987 679999996 7777665432       479999999988


Q ss_pred             -CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCC--chhhhhhhhhhhhhhhhcCCCcc
Q 018405          248 -SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN--SATSREISILDTICLFQVPHGRE  322 (356)
Q Consensus       248 -~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  322 (356)
                       +++++  |+|++..++||+++  ..++|++++++|+|||+++|.+.........  .........+........ .-..
T Consensus       180 ~~~~~~~FD~V~s~~~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~  256 (340)
T PLN02244        180 QPFEDGQFDLVWSMESGEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAW  256 (340)
T ss_pred             CCCCCCCccEEEECCchhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCC
Confidence             76654  99999999999976  6899999999999999999988654321110  000000111111111000 0122


Q ss_pred             CCHHHHHHHHHHcCCcceeEEEcc
Q 018405          323 RTKQEYSELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       323 ~t~~e~~~ll~~aGf~~~~~~~~~  346 (356)
                      .+.++|.++++++||.++++....
T Consensus       257 ~s~~~~~~~l~~aGf~~v~~~d~s  280 (340)
T PLN02244        257 CSTSDYVKLAESLGLQDIKTEDWS  280 (340)
T ss_pred             CCHHHHHHHHHHCCCCeeEeeeCc
Confidence            489999999999999999877653

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.71  E-value=2.7e-16  Score=132.51  Aligned_cols=151  Identities=20%  Similarity=0.249  Sum_probs=114.7

Q ss_pred             HHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC------CeEEEccc-hHHHHhCCCC---------CCceEEEccCCC-
Q 018405          185 LESYKGFEHVKKLVDVGGGLGATLNMIISKYPR------IKGINYDL-PYVIKNAPSY---------LGIEHVGGDFFE-  247 (356)
Q Consensus       185 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-  247 (356)
                      +..+. .....++||++||||..+..+++..+.      .+++++|+ |++++.++++         .++.++++|..+ 
T Consensus        93 v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L  171 (296)
T KOG1540|consen   93 VSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL  171 (296)
T ss_pred             hhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence            33443 445689999999999999999998877      78999996 9998877553         459999999999 


Q ss_pred             CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc---CC---
Q 018405          248 SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV---PH---  319 (356)
Q Consensus       248 ~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---  319 (356)
                      |+|++  |.+++.+.+.++++  ..+.|++++|+|||||++.+.|+.--+..   +..+++..+.+..+...   ..   
T Consensus       172 pFdd~s~D~yTiafGIRN~th--~~k~l~EAYRVLKpGGrf~cLeFskv~~~---~l~~fy~~ysf~VlpvlG~~iagd~  246 (296)
T KOG1540|consen  172 PFDDDSFDAYTIAFGIRNVTH--IQKALREAYRVLKPGGRFSCLEFSKVENE---PLKWFYDQYSFDVLPVLGEIIAGDR  246 (296)
T ss_pred             CCCCCcceeEEEecceecCCC--HHHHHHHHHHhcCCCcEEEEEEccccccH---HHHHHHHhhhhhhhchhhHhhhhhH
Confidence            99976  99999999999977  89999999999999999999997654321   12222222221111110   00   


Q ss_pred             ----------CccCCHHHHHHHHHHcCCccee
Q 018405          320 ----------GRERTKQEYSELAIKAGFKGVN  341 (356)
Q Consensus       320 ----------~~~~t~~e~~~ll~~aGf~~~~  341 (356)
                                .+.++.+++..+.++|||+.+.
T Consensus       247 ~sYqYLveSI~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  247 KSYQYLVESIRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             hhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence                      1234889999999999999886

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.69  E-value=1e-15  Score=139.10  Aligned_cols=140  Identities=26%  Similarity=0.286  Sum_probs=109.4

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCCC--cEEEecccccCC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPEA--DTILMKWVLSSF  264 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~  264 (356)
                      .+..+|||||||+|..+..+++.++..+++++|. +.+++.+++.   .+++++.+|+.+ +++.+  |+|++..++|++
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~  191 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW  191 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence            3567999999999999999999888889999996 7887777653   578999999987 66543  999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405          265 DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       265 ~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  344 (356)
                      ++  ...+|++++++|+|||++++.+...+..    +..+  ...+.+       ....+.+++.++++++||+.+++..
T Consensus       192 ~d--~~~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r--~~~~~~-------~~~~t~eEl~~lL~~aGF~~V~i~~  256 (340)
T PLN02490        192 PD--PQRGIKEAYRVLKIGGKACLIGPVHPTF----WLSR--FFADVW-------MLFPKEEEYIEWFTKAGFKDVKLKR  256 (340)
T ss_pred             CC--HHHHHHHHHHhcCCCcEEEEEEecCcch----hHHH--Hhhhhh-------ccCCCHHHHHHHHHHCCCeEEEEEE
Confidence            76  4689999999999999999987654321    0000  011111       1125789999999999999998877


Q ss_pred             cc
Q 018405          345 GA  346 (356)
Q Consensus       345 ~~  346 (356)
                      ..
T Consensus       257 i~  258 (340)
T PLN02490        257 IG  258 (340)
T ss_pred             cC
Confidence            54

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.69  E-value=2e-15  Score=132.79  Aligned_cols=169  Identities=18%  Similarity=0.231  Sum_probs=121.4

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPE  251 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~  251 (356)
                      ..+++.+. ..+..+|||||||+|.++..++..+| ..+++++|. +.+++.+++.       .++.++.+|+.+ +.+.
T Consensus        41 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  119 (239)
T PRK00216         41 RKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD  119 (239)
T ss_pred             HHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence            34455554 44678999999999999999999987 789999996 7776666442       468899999887 4443


Q ss_pred             C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhh----hhcCC------
Q 018405          252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICL----FQVPH------  319 (356)
Q Consensus       252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------  319 (356)
                      +  |+|++.+++|++++  ...+|+++.++|+|||++++++...+....   .......+....+    ....+      
T Consensus       120 ~~~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (239)
T PRK00216        120 NSFDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYS  194 (239)
T ss_pred             CCccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHH
Confidence            3  99999999999965  789999999999999999999876654311   0000000000000    00000      


Q ss_pred             ------CccCCHHHHHHHHHHcCCcceeEEEcc-CceeEEEEeC
Q 018405          320 ------GRERTKQEYSELAIKAGFKGVNYEYGA-CNLYVMEFLK  356 (356)
Q Consensus       320 ------~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~  356 (356)
                            ...++.++|.++++++||+.+++.... +...++.++|
T Consensus       195 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  238 (239)
T PRK00216        195 YLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK  238 (239)
T ss_pred             HHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence                  123578999999999999999998865 5567888775

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.67  E-value=2.7e-15  Score=130.50  Aligned_cols=168  Identities=20%  Similarity=0.228  Sum_probs=120.0

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC--c
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA--D  253 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~--D  253 (356)
                      .+++.+. ..+..+|||+|||+|..+..+++.+|. .+++++|. +.+++.++++    .+++++.+|+.+ +.+.+  |
T Consensus        30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D  108 (223)
T TIGR01934        30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD  108 (223)
T ss_pred             HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence            4444444 446789999999999999999999987 78999996 6776665442    478999999987 55443  9


Q ss_pred             EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC-----C---------
Q 018405          254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP-----H---------  319 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---------  319 (356)
                      +|++..++|+.++  ...+|+++++.|+|||++++++...+....  .......... .++....     .         
T Consensus       109 ~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  183 (223)
T TIGR01934       109 AVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANAL--LKKFYKFYLK-NVLPSIGGLISKNAEAYTYLPE  183 (223)
T ss_pred             EEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchh--hHHHHHHHHH-HhhhhhhhhhcCCchhhHHHHH
Confidence            9999999999865  789999999999999999999876543210  0000000000 0000000     0         


Q ss_pred             --CccCCHHHHHHHHHHcCCcceeEEEccCce-eEEEEeC
Q 018405          320 --GRERTKQEYSELAIKAGFKGVNYEYGACNL-YVMEFLK  356 (356)
Q Consensus       320 --~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-~vi~~~~  356 (356)
                        ....+.++|.++++++||+.+.+.+..... .+++++|
T Consensus       184 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  223 (223)
T TIGR01934       184 SIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK  223 (223)
T ss_pred             HHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence              123478999999999999999999887664 4666654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.67  E-value=1.2e-15  Score=147.53  Aligned_cols=152  Identities=20%  Similarity=0.265  Sum_probs=116.6

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-  252 (356)
                      ...+++.+. +++..+|||||||+|..+..+++.+ +.+++++|+ +.+++.|+++     .++++..+|+.+ ++|+. 
T Consensus       255 te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~  332 (475)
T PLN02336        255 TKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS  332 (475)
T ss_pred             HHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence            445666666 6677899999999999999998876 779999997 7777776432     478999999988 66653 


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL  331 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  331 (356)
                       |+|++..+++|+++  ...+|++++++|+|||++++.+.........   ......     ... .+...++.+++.++
T Consensus       333 fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~---~~~~~~-----~~~-~g~~~~~~~~~~~~  401 (475)
T PLN02336        333 FDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPS---PEFAEY-----IKQ-RGYDLHDVQAYGQM  401 (475)
T ss_pred             EEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCc---HHHHHH-----HHh-cCCCCCCHHHHHHH
Confidence             99999999999965  6899999999999999999998766432211   111111     111 13456789999999


Q ss_pred             HHHcCCcceeEEEc
Q 018405          332 AIKAGFKGVNYEYG  345 (356)
Q Consensus       332 l~~aGf~~~~~~~~  345 (356)
                      ++++||+++.+...
T Consensus       402 l~~aGF~~i~~~d~  415 (475)
T PLN02336        402 LKDAGFDDVIAEDR  415 (475)
T ss_pred             HHHCCCeeeeeecc
Confidence            99999999876543

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.67  E-value=8.6e-16  Score=134.23  Aligned_cols=158  Identities=22%  Similarity=0.254  Sum_probs=128.0

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~  251 (356)
                      ....+++.+. ++++.+|||||||.|.++...++++ +++++++++ ++..+.++++       .++++...|..+..+.
T Consensus        60 k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~  137 (283)
T COG2230          60 KLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP  137 (283)
T ss_pred             HHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence            3567777787 9999999999999999999999999 899999996 6666665542       4789999998874444


Q ss_pred             CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405          252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL  331 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  331 (356)
                      .|-|++..+++|+..+.....++++++.|+|||++++.....+.....       ...++..--.+|+|..++..++.+.
T Consensus       138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~  210 (283)
T COG2230         138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILEL  210 (283)
T ss_pred             cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHH
Confidence            799999999999999999999999999999999999998887664321       1112222222579999999999999


Q ss_pred             HHHcCCcceeEEEcc
Q 018405          332 AIKAGFKGVNYEYGA  346 (356)
Q Consensus       332 l~~aGf~~~~~~~~~  346 (356)
                      .+++||.+.+.....
T Consensus       211 ~~~~~~~v~~~~~~~  225 (283)
T COG2230         211 ASEAGFVVLDVESLR  225 (283)
T ss_pred             HHhcCcEEehHhhhc
Confidence            999999998766553

>TIGR00452 methyltransferase, putative

Probab=99.67  E-value=2.7e-15  Score=135.33  Aligned_cols=154  Identities=15%  Similarity=0.021  Sum_probs=107.8

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhC-------CCCCCceEEEccCCC-CCCCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNA-------PSYLGIEHVGGDFFE-SVPEA  252 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~~v~~~~~D~~~-~~~~~  252 (356)
                      ..++..+. ..+..+|||||||+|.++..++...+. .++++|. +.++.++       ....++.+..+|+.+ +....
T Consensus       111 ~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~  188 (314)
T TIGR00452       111 DRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA  188 (314)
T ss_pred             HHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence            34555554 445689999999999999999887664 7899995 5555432       122567888888776 43334


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL  331 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  331 (356)
                       |+|++..+|||+++  ...+|++++++|+|||.|++.+...+..........   ...-.+..   ....++.+++..+
T Consensus       189 FD~V~s~gvL~H~~d--p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~---~ry~k~~n---v~flpS~~~L~~~  260 (314)
T TIGR00452       189 FDTVFSMGVLYHRKS--PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK---DRYAKMKN---VYFIPSVSALKNW  260 (314)
T ss_pred             cCEEEEcchhhccCC--HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch---HHHHhccc---cccCCCHHHHHHH
Confidence             99999999999965  689999999999999999998766543321110000   00101110   1124689999999


Q ss_pred             HHHcCCcceeEEEc
Q 018405          332 AIKAGFKGVNYEYG  345 (356)
Q Consensus       332 l~~aGf~~~~~~~~  345 (356)
                      ++++||+.+++...
T Consensus       261 L~~aGF~~V~i~~~  274 (314)
T TIGR00452       261 LEKVGFENFRILDV  274 (314)
T ss_pred             HHHCCCeEEEEEec
Confidence            99999999987654

Known examples to date are restricted to the proteobacteria.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.66  E-value=1.9e-15  Score=137.83  Aligned_cols=153  Identities=17%  Similarity=0.072  Sum_probs=108.1

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC-------CCCCceEEEccCCC-CCCCC-
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP-------SYLGIEHVGGDFFE-SVPEA-  252 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~D~~~-~~~~~-  252 (356)
                      .+...++ .-...+|||||||+|.++..++...+. .++++|. +.++.+++       ...+++++.+|+.+ +.+.. 
T Consensus       113 ~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F  190 (322)
T PRK15068        113 RVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF  190 (322)
T ss_pred             HHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence            3444454 234589999999999999999998765 5999996 54443221       12479999999887 65444 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA  332 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll  332 (356)
                      |+|++..++||..+  ...+|+++++.|+|||.+++.+.+.+.+........   ..+..+..   .-..+|.+++.+++
T Consensus       191 D~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~---~~y~~~~~---~~~lps~~~l~~~L  262 (322)
T PRK15068        191 DTVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG---DRYAKMRN---VYFIPSVPALKNWL  262 (322)
T ss_pred             CEEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch---hHHhcCcc---ceeCCCHHHHHHHH
Confidence            99999999999865  689999999999999999987666554322111000   00000100   11246899999999


Q ss_pred             HHcCCcceeEEEc
Q 018405          333 IKAGFKGVNYEYG  345 (356)
Q Consensus       333 ~~aGf~~~~~~~~  345 (356)
                      +++||+.+++...
T Consensus       263 ~~aGF~~i~~~~~  275 (322)
T PRK15068        263 ERAGFKDVRIVDV  275 (322)
T ss_pred             HHcCCceEEEEeC
Confidence            9999999988754

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.65  E-value=9.6e-16  Score=126.23  Aligned_cols=137  Identities=21%  Similarity=0.257  Sum_probs=97.6

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCC-C-cEEEecccccCCCh
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPE-A-DTILMKWVLSSFDD  266 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~-~-D~i~~~~vlh~~~~  266 (356)
                      ..+..+|||||||+|.++..+.+...  +++++|. +.+++.    ..+.....+... +.++ . |+|++..+|||+++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d   93 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD   93 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence            45788999999999999999976533  8999996 777766    234444433333 2333 3 99999999999975


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405          267 EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVN  341 (356)
Q Consensus       267 ~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~  341 (356)
                        ...+|+++++.|+|||++++.++.....    ....+..+ ...... ......+++++|.++++++||++++
T Consensus        94 --~~~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen   94 --PEEFLKELSRLLKPGGYLVISDPNRDDP----SPRSFLKW-RYDRPY-GGHVHFFSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             --HHHHHHHHHHCEEEEEEEEEEEEBTTSH----HHHHHHHC-CGTCHH-TTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred             --HHHHHHHHHHhcCCCCEEEEEEcCCcch----hhhHHHhc-CCcCcc-CceeccCCHHHHHHHHHHCCCEEEE
Confidence              8999999999999999999998876421    00011111 111100 0134567999999999999999875

...

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.65  E-value=1.1e-15  Score=135.57  Aligned_cols=162  Identities=17%  Similarity=0.170  Sum_probs=111.1

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-------CCCceEEEccCCCCCCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-------YLGIEHVGGDFFESVPE  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~~~  251 (356)
                      .+..+++++. ++++.+|||||||.|.++..+++++ +++++++.+ +...+.+++       .+++++...|+.+..+.
T Consensus        50 k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~  127 (273)
T PF02353_consen   50 KLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK  127 (273)
T ss_dssp             HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred             HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence            3567778777 8899999999999999999999998 789999986 555554432       25799999998763234


Q ss_pred             CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405          252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL  331 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  331 (356)
                      .|.|++..++.|+..+....+++++.++|+|||++++...+.......   .......++...-.+|+|..++.+++...
T Consensus       128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~---~~~~~~~~~i~kyiFPgg~lps~~~~~~~  204 (273)
T PF02353_consen  128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYH---AERRSSSDFIRKYIFPGGYLPSLSEILRA  204 (273)
T ss_dssp             -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHH---HCTTCCCHHHHHHTSTTS---BHHHHHHH
T ss_pred             CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccch---hhcCCCceEEEEeeCCCCCCCCHHHHHHH
Confidence            499999999999998889999999999999999999987776542100   00000012222222478899999999999


Q ss_pred             HHHcCCcceeEEEcc
Q 018405          332 AIKAGFKGVNYEYGA  346 (356)
Q Consensus       332 l~~aGf~~~~~~~~~  346 (356)
                      ++++||++..+....
T Consensus       205 ~~~~~l~v~~~~~~~  219 (273)
T PF02353_consen  205 AEDAGLEVEDVENLG  219 (273)
T ss_dssp             HHHTT-EEEEEEE-H
T ss_pred             HhcCCEEEEEEEEcC
Confidence            999999998877654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.64  E-value=2.4e-15  Score=131.03  Aligned_cols=136  Identities=20%  Similarity=0.272  Sum_probs=106.6

Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccccCC
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVLSSF  264 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~  264 (356)
                      .+|||||||+|..+..+++.+|+.+++++|+ +.+++.++.+       ++++++..|+.. +.++. |+|++..++||+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            3799999999999999999999999999996 7776666542       578999999876 55544 999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405          265 DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       265 ~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  344 (356)
                      ++  ...+|++++++|+|||++++.+...+.....        ...      .......+.++|.++++++||++++...
T Consensus        81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------~~~------~~~~~~~s~~~~~~~l~~~Gf~~~~~~~  144 (224)
T smart00828       81 KD--KMDLFSNISRHLKDGGHLVLADFIANLLSAI--------EHE------ETTSYLVTREEWAELLARNNLRVVEGVD  144 (224)
T ss_pred             CC--HHHHHHHHHHHcCCCCEEEEEEcccccCccc--------ccc------ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence            65  6899999999999999999998754321100        000      0012246889999999999999998876


Q ss_pred             cc
Q 018405          345 GA  346 (356)
Q Consensus       345 ~~  346 (356)
                      ..
T Consensus       145 ~~  146 (224)
T smart00828      145 AS  146 (224)
T ss_pred             Cc
Confidence            53

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.64  E-value=8.4e-16  Score=139.22  Aligned_cols=142  Identities=15%  Similarity=0.047  Sum_probs=103.7

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCC--CcEEEecccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPE--ADTILMKWVL  261 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~--~D~i~~~~vl  261 (356)
                      +..+|||||||+|.++..+++  ++.+++++|. +.+++.++.+       .+++++.+|+.+ +.+.  .|+|++..++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            456999999999999998886  5778999996 8888877642       368899999876 5443  3999999999


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhh-hhhhhhcC-----CCccCCHHHHHHHHHHc
Q 018405          262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILD-TICLFQVP-----HGRERTKQEYSELAIKA  335 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~t~~e~~~ll~~a  335 (356)
                      ||+++  ...+|++++++|+|||.+++........      ........ .....+.+     ..+.++++++.++++++
T Consensus       209 eHv~d--~~~~L~~l~r~LkPGG~liist~nr~~~------~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a  280 (322)
T PLN02396        209 EHVAN--PAEFCKSLSALTIPNGATVLSTINRTMR------AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA  280 (322)
T ss_pred             HhcCC--HHHHHHHHHHHcCCCcEEEEEECCcCHH------HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc
Confidence            99976  6899999999999999999976543210      00000000 00000001     12357999999999999


Q ss_pred             CCcceeEEE
Q 018405          336 GFKGVNYEY  344 (356)
Q Consensus       336 Gf~~~~~~~  344 (356)
                      ||+++++.-
T Consensus       281 Gf~i~~~~G  289 (322)
T PLN02396        281 SVDVKEMAG  289 (322)
T ss_pred             CCeEEEEee
Confidence            999988744

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.64  E-value=5e-15  Score=126.02  Aligned_cols=140  Identities=21%  Similarity=0.191  Sum_probs=105.2

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC-
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA-  252 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~-  252 (356)
                      +.+++.++ ..+..+|||+|||+|..+..++++  +.+++++|. +.+++.+++.      .++++...|+.+ +++.. 
T Consensus        20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f   96 (197)
T PRK11207         20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY   96 (197)
T ss_pred             HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence            34555555 456689999999999999999985  568999996 7777766532      458888899877 55544 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA  332 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll  332 (356)
                      |+|++..++|++++++...++++++++|+|||++++++....++....        ..        .....+.+|+.+++
T Consensus        97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~--------~~--------~~~~~~~~el~~~~  160 (197)
T PRK11207         97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT--------VG--------FPFAFKEGELRRYY  160 (197)
T ss_pred             CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC--------CC--------CCCccCHHHHHHHh
Confidence            999999999999888899999999999999999887765543321000        00        01225788999988


Q ss_pred             HHcCCcceeE
Q 018405          333 IKAGFKGVNY  342 (356)
Q Consensus       333 ~~aGf~~~~~  342 (356)
                      +  ||+++..
T Consensus       161 ~--~~~~~~~  168 (197)
T PRK11207        161 E--GWEMVKY  168 (197)
T ss_pred             C--CCeEEEe
Confidence            7  8987765

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.63  E-value=1.2e-14  Score=129.32  Aligned_cols=156  Identities=19%  Similarity=0.225  Sum_probs=109.2

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCCCCC-CC-cEEE
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFESVP-EA-DTIL  256 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~~-~~-D~i~  256 (356)
                      ...++..++ ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ +++.++.+|+.+..+ .. |+|+
T Consensus        20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~   98 (258)
T PRK01683         20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF   98 (258)
T ss_pred             HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence            456677676 67789999999999999999999999999999996 8888888765 679999999876323 33 9999


Q ss_pred             ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh--hhhhhhhh-cCCCccCCHHHHHHHHH
Q 018405          257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI--LDTICLFQ-VPHGRERTKQEYSELAI  333 (356)
Q Consensus       257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~t~~e~~~ll~  333 (356)
                      +..++|++++  ...+|++++++|+|||++++.-+.....+...........  ....+... .......+..++.+++.
T Consensus        99 ~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~  176 (258)
T PRK01683         99 ANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA  176 (258)
T ss_pred             EccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence            9999999865  6799999999999999998853211110000000000000  00000000 00123457889999999


Q ss_pred             HcCCcc
Q 018405          334 KAGFKG  339 (356)
Q Consensus       334 ~aGf~~  339 (356)
                      ++|+.+
T Consensus       177 ~~g~~v  182 (258)
T PRK01683        177 PAACRV  182 (258)
T ss_pred             hCCCce
Confidence            999875

>PRK08317 hypothetical protein; Provisional

Probab=99.62  E-value=1.6e-14  Score=127.03  Aligned_cols=157  Identities=18%  Similarity=0.247  Sum_probs=111.9

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC--
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA--  252 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~--  252 (356)
                      .+++.+. +.+..+|||+|||+|.++..++..+ |..+++++|. +..++.+++.     .+++++..|+.. +++..  
T Consensus        10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~   88 (241)
T PRK08317         10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF   88 (241)
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence            3445555 7788999999999999999999988 7889999996 7766666442     568899999876 55543  


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCc-hhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENS-ATSREISILDTICLFQVPHGRERTKQEYSEL  331 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  331 (356)
                      |+|++.++++|+++  ...++++++++|+|||++++.++......... ...........+.  .. .....+..+|.++
T Consensus        89 D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~  163 (241)
T PRK08317         89 DAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWS--DH-FADPWLGRRLPGL  163 (241)
T ss_pred             eEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHH--hc-CCCCcHHHHHHHH
Confidence            99999999999976  68899999999999999999886432211000 0001111111111  01 2233466789999


Q ss_pred             HHHcCCcceeEEEc
Q 018405          332 AIKAGFKGVNYEYG  345 (356)
Q Consensus       332 l~~aGf~~~~~~~~  345 (356)
                      ++++||..+.+...
T Consensus       164 l~~aGf~~~~~~~~  177 (241)
T PRK08317        164 FREAGLTDIEVEPY  177 (241)
T ss_pred             HHHcCCCceeEEEE
Confidence            99999998876543

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.62  E-value=3.2e-14  Score=118.50  Aligned_cols=161  Identities=16%  Similarity=0.101  Sum_probs=120.9

Q ss_pred             CCc-eEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC------CCCCc-eEEEccCCCC-CC---------CC-
Q 018405          193 HVK-KLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP------SYLGI-EHVGGDFFES-VP---------EA-  252 (356)
Q Consensus       193 ~~~-~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v-~~~~~D~~~~-~~---------~~-  252 (356)
                      ... +|||||+|||.++..+++.+|+++..--|. +.......      ..+++ .-+..|+.++ ++         .. 
T Consensus        24 ~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~  103 (204)
T PF06080_consen   24 DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESF  103 (204)
T ss_pred             ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCc
Confidence            444 599999999999999999999999877774 22211111      11333 2345666652 22         13 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA  332 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll  332 (356)
                      |+|++.+++|..+.+.+..+++.+.++|+|||.|+++.++..+..-..   .-...||-......+....|..+++.++.
T Consensus       104 D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v~~lA  180 (204)
T PF06080_consen  104 DAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDVEALA  180 (204)
T ss_pred             ceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHHHHHH
Confidence            999999999999999999999999999999999999999887653222   12234554444333456789999999999


Q ss_pred             HHcCCcceeEEEccCceeEEEEeC
Q 018405          333 IKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       333 ~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      +++||+..+.+.++.++-+++++|
T Consensus       181 ~~~GL~l~~~~~MPANN~~Lvfrk  204 (204)
T PF06080_consen  181 AAHGLELEEDIDMPANNLLLVFRK  204 (204)
T ss_pred             HHCCCccCcccccCCCCeEEEEeC
Confidence            999999999999998888777765

The function of this family is unknown.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.62  E-value=1.1e-14  Score=130.67  Aligned_cols=145  Identities=19%  Similarity=0.286  Sum_probs=109.5

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC--cEEEecc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA--DTILMKW  259 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~  259 (356)
                      +++..+|||||||+|..+..+++.. +..+++++|. +.+++.++++      ++++++.+|+.+ ++++.  |+|++..
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            5678899999999999888777654 5668999996 8888877642      578999999887 66553  9999999


Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcc
Q 018405          260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKG  339 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~  339 (356)
                      ++|++++  ..++|++++++|+|||++++.+....... .   ...  ..+..+...+ .+...+.++|.++++++||..
T Consensus       155 v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~---~~~--~~~~~~~~~~-~~~~~~~~e~~~~l~~aGf~~  225 (272)
T PRK11873        155 VINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGEL-P---EEI--RNDAELYAGC-VAGALQEEEYLAMLAEAGFVD  225 (272)
T ss_pred             cccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCC-C---HHH--HHhHHHHhcc-ccCCCCHHHHHHHHHHCCCCc
Confidence            9999865  67899999999999999999987754321 1   111  1111121111 234568899999999999999


Q ss_pred             eeEEE
Q 018405          340 VNYEY  344 (356)
Q Consensus       340 ~~~~~  344 (356)
                      +++..
T Consensus       226 v~i~~  230 (272)
T PRK11873        226 ITIQP  230 (272)
T ss_pred             eEEEe
Confidence            87644

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.61  E-value=1.8e-15  Score=116.90  Aligned_cols=98  Identities=21%  Similarity=0.339  Sum_probs=82.3

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccC-CC-CCCCC-cEEEecc-c
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDF-FE-SVPEA-DTILMKW-V  260 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~-~~-~~~~~-D~i~~~~-v  260 (356)
                      +..+|||||||+|.++..+++.+|+.+++++|. |.+++.++++       ++++++.+|+ .. ..++. |+|++.. +
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~   80 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT   80 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence            467999999999999999999999999999996 8887776542       7899999999 33 33334 9999999 6


Q ss_pred             ccCCCh-HHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          261 LSSFDD-EQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       261 lh~~~~-~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +|++.+ ++..++|+++++.|+|||+++|.+
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            775543 578899999999999999999864

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.58  E-value=1.2e-14  Score=128.93  Aligned_cols=157  Identities=17%  Similarity=0.123  Sum_probs=106.3

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--CCCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--SVPE  251 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~~~  251 (356)
                      ..+++.++  .++.+|||||||+|.++..+++.  +.+++++|. +.+++.++++       ++++++.+|+.+  +.+.
T Consensus        35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~  110 (255)
T PRK11036         35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE  110 (255)
T ss_pred             HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence            34555554  45679999999999999999986  468999996 8888877643       468899998865  2333


Q ss_pred             -C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCch-hhhhhhh-hhhhh---hhhcCCCccCC
Q 018405          252 -A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSA-TSREISI-LDTIC---LFQVPHGRERT  324 (356)
Q Consensus       252 -~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~-~~~~~~~-~~~~~---~~~~~~~~~~t  324 (356)
                       . |+|++..++||+++  ...+|++++++|+|||++++............. ...+... ..+..   .... .....+
T Consensus       111 ~~fD~V~~~~vl~~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~  187 (255)
T PRK11036        111 TPVDLILFHAVLEWVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLD  187 (255)
T ss_pred             CCCCEEEehhHHHhhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCC
Confidence             3 99999999999965  579999999999999999987543321000000 0000000 00000   0000 122357


Q ss_pred             HHHHHHHHHHcCCcceeEEEc
Q 018405          325 KQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       325 ~~e~~~ll~~aGf~~~~~~~~  345 (356)
                      ++++.++++++||+++...-.
T Consensus       188 ~~~l~~~l~~aGf~~~~~~gi  208 (255)
T PRK11036        188 PEQVYQWLEEAGWQIMGKTGV  208 (255)
T ss_pred             HHHHHHHHHHCCCeEeeeeeE
Confidence            899999999999999865544

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.58  E-value=1.9e-14  Score=118.48  Aligned_cols=172  Identities=17%  Similarity=0.181  Sum_probs=122.7

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCCCCCC--CcEEE
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFESVPE--ADTIL  256 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~~~--~D~i~  256 (356)
                      +..++..++ .....+|+|+|||+|..+..|++++|...++++|. +.|++.|+++ ++++|..+|+.+..|+  .|+++
T Consensus        19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf   97 (257)
T COG4106          19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF   97 (257)
T ss_pred             HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence            457777787 88899999999999999999999999999999995 9999998765 8999999999985553  49999


Q ss_pred             ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc---CCCccCCHHHHHHHHH
Q 018405          257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV---PHGRERTKQEYSELAI  333 (356)
Q Consensus       257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~e~~~ll~  333 (356)
                      .+.+||.++|  -.++|.++...|.|||.|.+.=+-.-+.+............-+......   ......+...+-++|.
T Consensus        98 aNAvlqWlpd--H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa  175 (257)
T COG4106          98 ANAVLQWLPD--HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLA  175 (257)
T ss_pred             hhhhhhhccc--cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhC
Confidence            9999999976  6899999999999999999954332222111000000000000000000   1234458899999999


Q ss_pred             HcCCcceeEEE------ccCceeEEEEeC
Q 018405          334 KAGFKGVNYEY------GACNLYVMEFLK  356 (356)
Q Consensus       334 ~aGf~~~~~~~------~~~~~~vi~~~~  356 (356)
                      ..+-++ .++.      +.+...++|.+|
T Consensus       176 ~~~~rv-DiW~T~Y~h~l~~a~aIvdWvk  203 (257)
T COG4106         176 PLACRV-DIWHTTYYHQLPGADAIVDWVK  203 (257)
T ss_pred             ccccee-eeeeeeccccCCCccchhhhee
Confidence            887654 3332      235566776654

>PRK06922 hypothetical protein; Provisional

Probab=99.58  E-value=1.7e-14  Score=138.95  Aligned_cols=142  Identities=22%  Similarity=0.322  Sum_probs=105.3

Q ss_pred             CChhhhhccCchHHHHHHHHHhhhhHH--HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHH
Q 018405          153 MSIYDYMGVDSRFNDVFNTGMLGHTCV--VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVI  229 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~  229 (356)
                      ..+|+++...++..+.|...|......  ........++ +.+..+|||||||+|..+..+++.+|+.+++++|+ +.++
T Consensus       377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML  455 (677)
T PRK06922        377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI  455 (677)
T ss_pred             hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            356777777766666665544332111  1111122233 55778999999999999999999999999999997 7778


Q ss_pred             HhCCCC-----CCceEEEccCCC-C--CCCC--cEEEecccccCC-----------ChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          230 KNAPSY-----LGIEHVGGDFFE-S--VPEA--DTILMKWVLSSF-----------DDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       230 ~~a~~~-----~~v~~~~~D~~~-~--~~~~--D~i~~~~vlh~~-----------~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      +.++++     .+++++.+|..+ +  +++.  |+|+++.++|+|           ++++..++|++++++|||||++++
T Consensus       456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII  535 (677)
T PRK06922        456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII  535 (677)
T ss_pred             HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence            777543     357788899876 4  4433  999999999986           346789999999999999999999


Q ss_pred             EecccCC
Q 018405          289 VNVTIPE  295 (356)
Q Consensus       289 ~e~~~~~  295 (356)
                      .|.+.++
T Consensus       536 ~D~v~~E  542 (677)
T PRK06922        536 RDGIMTE  542 (677)
T ss_pred             EeCccCC
Confidence            9976554

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.58  E-value=2.2e-15  Score=123.07  Aligned_cols=139  Identities=27%  Similarity=0.334  Sum_probs=100.4

Q ss_pred             CCCceEEEEcCCccHHHHHHH-HhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCCC-cEEEecc
Q 018405          192 EHVKKLVDVGGGLGATLNMII-SKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPEA-DTILMKW  259 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~-D~i~~~~  259 (356)
                      ++..+|||+|||+|.++..++ ...|+.+++++|. +.+++.++..      +++++..+|+.+ +  ++.. |+|++..
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~   81 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG   81 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence            356899999999999999999 5678999999996 8888888752      689999999999 5  3334 9999999


Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018405          260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAG  336 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG  336 (356)
                      ++|++++  ...+|+++.++|+|+|.+++.+........ ........ +..........+.  ..++|..++++||
T Consensus        82 ~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ag  152 (152)
T PF13847_consen   82 VLHHFPD--PEKVLKNIIRLLKPGGILIISDPNHNDELP-EQLEELMN-LYSEVWSMIYIGN--DKEEWKYILEEAG  152 (152)
T ss_dssp             TGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEEHSHHHH-HHHHHHHH-HHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred             chhhccC--HHHHHHHHHHHcCCCcEEEEEECChHHHHH-HHHHHHHH-HHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence            9999966  679999999999999999998887322100 00000000 0111111111111  7889999999998

...

>PRK05785 hypothetical protein; Provisional

Probab=99.57  E-value=9.8e-14  Score=120.47  Aligned_cols=156  Identities=15%  Similarity=0.096  Sum_probs=106.6

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChHH
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQ  268 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~  268 (356)
                      +..+|||||||+|..+..+++.+ +.+++++|. +.+++.++..  ..++.+|+.+ |+++.  |+|++..++||++|  
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d--  125 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDN--  125 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCC--
Confidence            46899999999999999999887 578999996 9999988754  3567889888 77765  99999999999965  


Q ss_pred             HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCC-------------ccCCHHHHHHHHHHc
Q 018405          269 SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHG-------------RERTKQEYSELAIKA  335 (356)
Q Consensus       269 ~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~t~~e~~~ll~~a  335 (356)
                      ..++|++++++|+|  .+.++|...++..-......++...-+..+...-.+             ...+.+++.++++++
T Consensus       126 ~~~~l~e~~RvLkp--~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~  203 (226)
T PRK05785        126 IEKVIAEFTRVSRK--QVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKY  203 (226)
T ss_pred             HHHHHHHHHHHhcC--ceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            78999999999999  344556554432100000001110011111110011             124889999999998


Q ss_pred             CCcceeEEEccCc-eeEEEEeC
Q 018405          336 GFKGVNYEYGACN-LYVMEFLK  356 (356)
Q Consensus       336 Gf~~~~~~~~~~~-~~vi~~~~  356 (356)
                      | ..++......+ ..++.++|
T Consensus       204 ~-~~~~~~~~~~G~~~~~~~~k  224 (226)
T PRK05785        204 A-DIKVYEERGLGLVYFVVGSS  224 (226)
T ss_pred             h-CceEEEEccccEEEEEEEee
Confidence            4 66777776544 44666654

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.56  E-value=8.2e-14  Score=118.36  Aligned_cols=140  Identities=17%  Similarity=0.125  Sum_probs=101.7

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---C--CceEEEccCCC-CCCCC-cE
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---L--GIEHVGGDFFE-SVPEA-DT  254 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--~v~~~~~D~~~-~~~~~-D~  254 (356)
                      .+++.+. ..++.+|||+|||+|..+..++++  +.+++++|. +.+++.+++.   .  .+.+...|+.. +.+.. |+
T Consensus        21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~   97 (195)
T TIGR00477        21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF   97 (195)
T ss_pred             HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence            4444454 445689999999999999999984  568999996 7777765432   1  36677778765 44444 99


Q ss_pred             EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHH
Q 018405          255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIK  334 (356)
Q Consensus       255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~  334 (356)
                      |++..++|+++.++...++++++++|+|||++++++....+....        ..        +.....+++++.++|+ 
T Consensus        98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~--------~~--------~~~~~~~~~el~~~f~-  160 (195)
T TIGR00477        98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC--------HM--------PFSFTFKEDELRQYYA-  160 (195)
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC--------CC--------CcCccCCHHHHHHHhC-
Confidence            999999999988888999999999999999988877654322100        00        0122367899999886 


Q ss_pred             cCCcceeEE
Q 018405          335 AGFKGVNYE  343 (356)
Q Consensus       335 aGf~~~~~~  343 (356)
                       +|+++...
T Consensus       161 -~~~~~~~~  168 (195)
T TIGR00477       161 -DWELLKYN  168 (195)
T ss_pred             -CCeEEEee
Confidence             58777655

Part of a tellurite-reducing operon tehA and tehB

>PRK06202 hypothetical protein; Provisional

Probab=99.55  E-value=2.2e-13  Score=119.26  Aligned_cols=147  Identities=16%  Similarity=0.088  Sum_probs=102.0

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHh----CCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCC-C-cEEEecc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISK----YPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPE-A-DTILMKW  259 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~-~-D~i~~~~  259 (356)
                      ..+..+|||||||+|.++..+++.    .|+.+++++|. +.+++.+++.   .++++...+... +.++ . |+|+++.
T Consensus        58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~  137 (232)
T PRK06202         58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH  137 (232)
T ss_pred             CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence            356789999999999998888764    45679999996 8888887654   457777665544 3333 3 9999999


Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhh-h-h-cCC-----CccCCHHHHHHH
Q 018405          260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICL-F-Q-VPH-----GRERTKQEYSEL  331 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~-----~~~~t~~e~~~l  331 (356)
                      ++||+++++...+|++++++++  |.+++.+...+..     ............. . . ..+     ...+|++|+.++
T Consensus       138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~l  210 (232)
T PRK06202        138 FLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-----AYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAAL  210 (232)
T ss_pred             eeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-----HHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHH
Confidence            9999998888899999999998  6677766554321     0000000000000 0 0 001     134689999999


Q ss_pred             HHHcCCcceeEEEc
Q 018405          332 AIKAGFKGVNYEYG  345 (356)
Q Consensus       332 l~~aGf~~~~~~~~  345 (356)
                      +++ ||++....+.
T Consensus       211 l~~-Gf~~~~~~~~  223 (232)
T PRK06202        211 APQ-GWRVERQWPF  223 (232)
T ss_pred             hhC-CCeEEeccce
Confidence            999 9998776665

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.54  E-value=1.7e-13  Score=120.40  Aligned_cols=136  Identities=19%  Similarity=0.254  Sum_probs=103.9

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCC-CCCCC--cEEEecccccCCCh
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDD  266 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~  266 (356)
                      .+.+|||||||+|.++..+++.+|..+++++|. +.+++.++..  ++++++.+|+.+ ++++.  |+|++.+++|+.++
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~  113 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD  113 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence            457999999999999999999999999999996 7777666543  478999999987 55543  99999999999855


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405          267 EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE  343 (356)
Q Consensus       267 ~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  343 (356)
                        ...+|++++++|+|||++++.++.....      ..   .....  .. ......+.++|.+++.++ |+.+...
T Consensus       114 --~~~~l~~~~~~L~~~G~l~~~~~~~~~~------~~---~~~~~--~~-~~~~~~~~~~~~~~l~~~-f~~~~~~  175 (240)
T TIGR02072       114 --LSQALSELARVLKPGGLLAFSTFGPGTL------HE---LRQSF--GQ-HGLRYLSLDELKALLKNS-FELLTLE  175 (240)
T ss_pred             --HHHHHHHHHHHcCCCcEEEEEeCCccCH------HH---HHHHH--HH-hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence              6899999999999999999986544321      00   11110  00 134456889999999988 8876543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.54  E-value=2.2e-13  Score=120.93  Aligned_cols=109  Identities=21%  Similarity=0.290  Sum_probs=86.0

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccH----HHHHHHHhCC-----CCeEEEccc-hHHHHhCCCC---------------
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGA----TLNMIISKYP-----RIKGINYDL-PYVIKNAPSY---------------  235 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~---------------  235 (356)
                      .+.+++... ..+..+|+|+|||+|.    ++..+.+.++     +.++++.|+ +.+++.|++.               
T Consensus        88 lp~l~~~~~-~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~  166 (264)
T smart00138       88 LPLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALL  166 (264)
T ss_pred             hHHHHHhcC-CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHH
Confidence            344444332 3456899999999996    4555666554     578999996 8888877652               


Q ss_pred             ------------------CCceEEEccCCC-CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          236 ------------------LGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       236 ------------------~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                                        .+|+|..+|+.+ +.+..  |+|+|.++|||+++++..+++++++++|+|||++++-.
T Consensus       167 ~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      167 ARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             hhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                              268999999998 44333  99999999999998888999999999999999999954

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.54  E-value=1e-13  Score=113.37  Aligned_cols=177  Identities=18%  Similarity=0.165  Sum_probs=120.6

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCc
Q 018405          166 NDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGI  238 (356)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v  238 (356)
                      ...|++.|..+.+.....+-. +-..+....||+||||||..-... .--|..+++.+|. +.+-+.+.+.      .++
T Consensus        50 t~~yne~~~~ykrelFs~i~~-~~gk~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~  127 (252)
T KOG4300|consen   50 TSIYNEIADSYKRELFSGIYY-FLGKSGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV  127 (252)
T ss_pred             HHHHHHHHHHHHHHHHhhhHH-HhcccCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence            456677776665544444332 222455678999999999876532 3337889999995 7776555332      456


Q ss_pred             e-EEEccCCC-C-CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhh
Q 018405          239 E-HVGGDFFE-S-VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTIC  313 (356)
Q Consensus       239 ~-~~~~D~~~-~-~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~  313 (356)
                      . |+.++..+ + .+++  |+|++..+|+-.  ++.++.|++++++|+|||+++++|.+..+...-  ........+...
T Consensus       128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~--n~i~q~v~ep~~  203 (252)
T KOG4300|consen  128 ERFVVADGENLPQLADGSYDTVVCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW--NRILQQVAEPLW  203 (252)
T ss_pred             EEEEeechhcCcccccCCeeeEEEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchHH--HHHHHHHhchhh
Confidence            6 88888887 4 4555  999999999977  568999999999999999999999987654211  111122222211


Q ss_pred             hhhcCCCccCCHHHHHHHHHHcCCcceeEEEccCcee
Q 018405          314 LFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLY  350 (356)
Q Consensus       314 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~  350 (356)
                      ... ..|...|++.| +.|++|-|+..+......+..
T Consensus       204 ~~~-~dGC~ltrd~~-e~Leda~f~~~~~kr~~~~tt  238 (252)
T KOG4300|consen  204 HLE-SDGCVLTRDTG-ELLEDAEFSIDSCKRFNFGTT  238 (252)
T ss_pred             hee-ccceEEehhHH-HHhhhcccccchhhcccCCce
Confidence            111 25666788777 566899999998877665543

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.54  E-value=1.2e-14  Score=108.48  Aligned_cols=88  Identities=23%  Similarity=0.400  Sum_probs=76.1

Q ss_pred             EEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCCC--cEEEecccccCCChHHHH
Q 018405          198 VDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQSL  270 (356)
Q Consensus       198 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~~~  270 (356)
                      ||+|||+|..+..+++. +..+++++|. +.+++.+++.   .++.++.+|+.+ ++++.  |+|++.+++||+  ++..
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~   77 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE   77 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence            89999999999999998 8899999996 7777777653   457799999998 77765  999999999999  5589


Q ss_pred             HHHHHHHHhCCCCCEEEE
Q 018405          271 KLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       271 ~~L~~~~~~L~pgG~lii  288 (356)
                      +++++++++|||||+++|
T Consensus        78 ~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   78 AALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHcCcCeEEeC
Confidence            999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.53  E-value=3.5e-13  Score=119.45  Aligned_cols=150  Identities=13%  Similarity=0.110  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--
Q 018405          178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA--  252 (356)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--  252 (356)
                      +.....+++.++ ..+..+|||+|||+|.++..+.+.  +.+++++|+ +.+++.++.+ ..+.++.+|+.+ ++++.  
T Consensus        28 ~~~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~f  104 (251)
T PRK10258         28 RQSADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATF  104 (251)
T ss_pred             HHHHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcE
Confidence            334556666666 445789999999999999888763  578999997 8888888765 346789999987 66654  


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA  332 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll  332 (356)
                      |+|+++.++|+.++  ...+|++++++|+|||.+++.........      .........-.. .......+.++|.+++
T Consensus       105 D~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~------el~~~~~~~~~~-~~~~~~~~~~~l~~~l  175 (251)
T PRK10258        105 DLAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSLP------ELHQAWQAVDER-PHANRFLPPDAIEQAL  175 (251)
T ss_pred             EEEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCchH------HHHHHHHHhccC-CccccCCCHHHHHHHH
Confidence            99999999998755  78999999999999999999776543211      110010000000 0123456899999999


Q ss_pred             HHcCCcc
Q 018405          333 IKAGFKG  339 (356)
Q Consensus       333 ~~aGf~~  339 (356)
                      .+.|+..
T Consensus       176 ~~~~~~~  182 (251)
T PRK10258        176 NGWRYQH  182 (251)
T ss_pred             HhCCcee
Confidence            9988764

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.53  E-value=2.4e-13  Score=117.90  Aligned_cols=147  Identities=12%  Similarity=0.036  Sum_probs=102.1

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCCCcEEEeccccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPEADTILMKWVLS  262 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~D~i~~~~vlh  262 (356)
                      ..+..+|||||||+|.++..+++.  +.+++++|. +.++..++++       .++.+..+|+.+.....|+|++..+++
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~  130 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLI  130 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHH
Confidence            346789999999999999999875  458899996 8888777543       378999999877333349999999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhh--cCCCccCCHHHHHHHHHHcCCcce
Q 018405          263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQ--VPHGRERTKQEYSELAIKAGFKGV  340 (356)
Q Consensus       263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~  340 (356)
                      |+++++...+++++.+.+++++.+.+..    ...   . ......+...+...  ...-..++.+++.++++++||+++
T Consensus       131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~~----~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~  202 (219)
T TIGR02021       131 HYPASDMAKALGHLASLTKERVIFTFAP----KTA---W-LAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIV  202 (219)
T ss_pred             hCCHHHHHHHHHHHHHHhCCCEEEEECC----Cch---H-HHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceee
Confidence            9988788899999999988664444321    110   0 00010111000000  011234589999999999999999


Q ss_pred             eEEEccC
Q 018405          341 NYEYGAC  347 (356)
Q Consensus       341 ~~~~~~~  347 (356)
                      .......
T Consensus       203 ~~~~~~~  209 (219)
T TIGR02021       203 REGLVST  209 (219)
T ss_pred             eeecccc
Confidence            8876543

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.51  E-value=4e-13  Score=125.33  Aligned_cols=155  Identities=12%  Similarity=0.144  Sum_probs=114.4

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCCCCCCCcEEE
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFESVPEADTIL  256 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~~~~~~D~i~  256 (356)
                      ...+++.+. +++..+|||||||+|.++..+++.+ +.+++++|+ +.+++.++++   ..+++...|+.+.....|+|+
T Consensus       156 ~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv  233 (383)
T PRK11705        156 LDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV  233 (383)
T ss_pred             HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence            455666666 7788999999999999999998875 678999996 8888777643   247777788765322339999


Q ss_pred             ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018405          257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAG  336 (356)
Q Consensus       257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG  336 (356)
                      +..+++|+++++...++++++++|+|||++++.+...+......     ..+..-.   .+|++..++.+++.+.++ .|
T Consensus       234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~y---ifp~g~lps~~~i~~~~~-~~  304 (383)
T PRK11705        234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINKY---IFPNGCLPSVRQIAQASE-GL  304 (383)
T ss_pred             EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCceee---ecCCCcCCCHHHHHHHHH-CC
Confidence            99999999877788999999999999999999876554321110     0111111   135777889999888766 58


Q ss_pred             CcceeEEEcc
Q 018405          337 FKGVNYEYGA  346 (356)
Q Consensus       337 f~~~~~~~~~  346 (356)
                      |.+.++....
T Consensus       305 ~~v~d~~~~~  314 (383)
T PRK11705        305 FVMEDWHNFG  314 (383)
T ss_pred             cEEEEEecCh
Confidence            9887766543

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.51  E-value=2.4e-13  Score=115.98  Aligned_cols=103  Identities=17%  Similarity=0.364  Sum_probs=88.9

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCCCCCCC--cEEEecccccCCCh
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFESVPEA--DTILMKWVLSSFDD  266 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~~~~--D~i~~~~vlh~~~~  266 (356)
                      ..+..+|||||||+|..+..+++..|+.+++++|. +.+++.|++. +++.+..+|+.+++++.  |+|++..+|||+++
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p  120 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP  120 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence            34678999999999999999999889999999996 8899998764 67889999988866554  99999999999988


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405          267 EQSLKLLKNCYKALPDGGKLLNVNVTIPE  295 (356)
Q Consensus       267 ~~~~~~L~~~~~~L~pgG~lii~e~~~~~  295 (356)
                      ++..++++++++++  ++.++|.|...+.
T Consensus       121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~  147 (204)
T TIGR03587       121 DNLPTAYRELYRCS--NRYILIAEYYNPS  147 (204)
T ss_pred             HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence            88899999999997  4788888886554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.50  E-value=5.6e-14  Score=119.41  Aligned_cols=141  Identities=17%  Similarity=0.126  Sum_probs=102.6

Q ss_pred             CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------C----CceEEEccCCCCCCCCcEEEeccc
Q 018405          194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------L----GIEHVGGDFFESVPEADTILMKWV  260 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----~v~~~~~D~~~~~~~~D~i~~~~v  260 (356)
                      +++|||||||+|.++..|++.  +..++++|. +.+++.|+..        .    ++++...|.+...+..|+|+|..+
T Consensus        90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev  167 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV  167 (282)
T ss_pred             CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence            378999999999999999985  478999996 8888888654        2    366667777665555799999999


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC-----CccCCHHHHHHHHHHc
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH-----GRERTKQEYSELAIKA  335 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~e~~~ll~~a  335 (356)
                      +||.  ++...+++.+.+.|+|||+++|......-..     ......++-..+...|.     .+..+++++.+++..+
T Consensus       168 leHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS-----~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~  240 (282)
T KOG1270|consen  168 LEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILS-----FAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNAN  240 (282)
T ss_pred             HHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHH-----hhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhc
Confidence            9999  4589999999999999999999765433210     00011111111111122     3456899999999999


Q ss_pred             CCcceeEE
Q 018405          336 GFKGVNYE  343 (356)
Q Consensus       336 Gf~~~~~~  343 (356)
                      |+++..+.
T Consensus       241 ~~~v~~v~  248 (282)
T KOG1270|consen  241 GAQVNDVV  248 (282)
T ss_pred             Ccchhhhh
Confidence            99887654

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.49  E-value=7.2e-15  Score=110.85  Aligned_cols=87  Identities=28%  Similarity=0.466  Sum_probs=59.4

Q ss_pred             EEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CC---ceEEEccCCCCCC-CC-cEEEecccccCCC
Q 018405          198 VDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LG---IEHVGGDFFESVP-EA-DTILMKWVLSSFD  265 (356)
Q Consensus       198 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~---v~~~~~D~~~~~~-~~-D~i~~~~vlh~~~  265 (356)
                      ||||||+|.++..+++.+|..+++++|. +.+++.++++      ..   +++...|.....+ +. |+|++.+++||+ 
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l-   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL-   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence            7999999999999999999999999996 8888777765      12   3333344433222 23 999999999999 


Q ss_pred             hHHHHHHHHHHHHhCCCCCEE
Q 018405          266 DEQSLKLLKNCYKALPDGGKL  286 (356)
Q Consensus       266 ~~~~~~~L~~~~~~L~pgG~l  286 (356)
                       ++...+|+++++.|+|||+|
T Consensus        80 -~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 -EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -S-HHHHHHHHTTT-TSS-EE
T ss_pred             -hhHHHHHHHHHHHcCCCCCC
Confidence             45889999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.49  E-value=3.9e-13  Score=130.06  Aligned_cols=144  Identities=18%  Similarity=0.257  Sum_probs=109.4

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCceEEEccCCC---CCCCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIEHVGGDFFE---SVPEA  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~---~~~~~  252 (356)
                      ...+++.++ ..+..+|||||||+|.++..+++..  .+++++|. +.+++.++.    .++++++.+|+..   +++..
T Consensus        26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~  102 (475)
T PLN02336         26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG  102 (475)
T ss_pred             hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence            355666665 4566799999999999999999875  37899996 777776542    2578999999864   44543


Q ss_pred             --cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018405          253 --DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSE  330 (356)
Q Consensus       253 --D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~  330 (356)
                        |+|++..++||+++++..++|+++++.|+|||++++.|.........      ....+        ....++...|.+
T Consensus       103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~------~~~~~--------~~~~~~~~~~~~  168 (475)
T PLN02336        103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS------KRKNN--------PTHYREPRFYTK  168 (475)
T ss_pred             CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc------cccCC--------CCeecChHHHHH
Confidence              99999999999998888999999999999999999998765432110      00000        122356889999


Q ss_pred             HHHHcCCccee
Q 018405          331 LAIKAGFKGVN  341 (356)
Q Consensus       331 ll~~aGf~~~~  341 (356)
                      ++.++||....
T Consensus       169 ~f~~~~~~~~~  179 (475)
T PLN02336        169 VFKECHTRDED  179 (475)
T ss_pred             HHHHheeccCC
Confidence            99999998764

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.48  E-value=3.8e-14  Score=119.70  Aligned_cols=143  Identities=19%  Similarity=0.165  Sum_probs=103.1

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CC--ceEEEccCCC-CCC--CCcEEEecccccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LG--IEHVGGDFFE-SVP--EADTILMKWVLSS  263 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~--v~~~~~D~~~-~~~--~~D~i~~~~vlh~  263 (356)
                      ...+|||||||.|.++..+++.  +..++++|. ++.++.|+.+   +.  +++.+...++ ...  ..|+|+|..||+|
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH  136 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH  136 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence            5689999999999999999995  488999996 8889988754   33  3466655554 222  3499999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh-hhhhhcCC-----CccCCHHHHHHHHHHcCC
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT-ICLFQVPH-----GRERTKQEYSELAIKAGF  337 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~t~~e~~~ll~~aGf  337 (356)
                      .++  ...+++.|.+.+||||.+++.......      .......+.. ..+.+.|.     .+...++|+..++.++|+
T Consensus       137 v~d--p~~~~~~c~~lvkP~G~lf~STinrt~------ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~  208 (243)
T COG2227         137 VPD--PESFLRACAKLVKPGGILFLSTINRTL------KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL  208 (243)
T ss_pred             cCC--HHHHHHHHHHHcCCCcEEEEeccccCH------HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence            977  577999999999999999997665322      1222222211 11111223     234578999999999999


Q ss_pred             cceeEEEc
Q 018405          338 KGVNYEYG  345 (356)
Q Consensus       338 ~~~~~~~~  345 (356)
                      .+.....+
T Consensus       209 ~~~~~~g~  216 (243)
T COG2227         209 KIIDRKGL  216 (243)
T ss_pred             eEEeecce
Confidence            98876554

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.48  E-value=8.5e-13  Score=111.57  Aligned_cols=125  Identities=17%  Similarity=0.244  Sum_probs=95.9

Q ss_pred             HHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCCC-cEEE
Q 018405          185 LESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPEA-DTIL  256 (356)
Q Consensus       185 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~~-D~i~  256 (356)
                      +..+. ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++      ++++++.+|...+.++. |+|+
T Consensus        24 ~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~  102 (187)
T PRK08287         24 LSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIF  102 (187)
T ss_pred             HHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEE
Confidence            34454 66788999999999999999999999999999996 7777776542      46888888876544443 9999


Q ss_pred             ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018405          257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAG  336 (356)
Q Consensus       257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG  336 (356)
                      +....++     ...+++.+++.|+|||++++.....                             .+.+++.+++++.|
T Consensus       103 ~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g  148 (187)
T PRK08287        103 IGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALAHLEKCG  148 (187)
T ss_pred             ECCCccC-----HHHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHHHHHHCC
Confidence            9876554     3568999999999999998843211                             12467778999999


Q ss_pred             CcceeEEE
Q 018405          337 FKGVNYEY  344 (356)
Q Consensus       337 f~~~~~~~  344 (356)
                      |+.+++..
T Consensus       149 ~~~~~~~~  156 (187)
T PRK08287        149 VSELDCVQ  156 (187)
T ss_pred             CCcceEEE
Confidence            98776543

>PRK04266 fibrillarin; Provisional

Probab=99.47  E-value=3.2e-12  Score=110.44  Aligned_cols=142  Identities=17%  Similarity=0.112  Sum_probs=97.2

Q ss_pred             HhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHH----hCCCCCCceEEEccCCCC-----CCCC-cEE
Q 018405          187 SYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIK----NAPSYLGIEHVGGDFFES-----VPEA-DTI  255 (356)
Q Consensus       187 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~D~~~~-----~~~~-D~i  255 (356)
                      .++ +++..+|||+|||+|.++..+++..+.-+++++|. +.+++    .++..+++.++.+|...+     .++. |+|
T Consensus        67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i  145 (226)
T PRK04266         67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI  145 (226)
T ss_pred             hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence            355 77889999999999999999999887668999996 75554    444457899999998653     1233 888


Q ss_pred             EecccccCCChH-HHHHHHHHHHHhCCCCCEEEEE-ecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018405          256 LMKWVLSSFDDE-QSLKLLKNCYKALPDGGKLLNV-NVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAI  333 (356)
Q Consensus       256 ~~~~vlh~~~~~-~~~~~L~~~~~~L~pgG~lii~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~  333 (356)
                      ++     +.+++ ....+|+++++.|||||+++|. ... +-              ++..     ... +..++..++++
T Consensus       146 ~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~-~~--------------d~~~-----~~~-~~~~~~~~~l~  199 (226)
T PRK04266        146 YQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKAR-SI--------------DVTK-----DPK-EIFKEEIRKLE  199 (226)
T ss_pred             EE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEecc-cc--------------cCcC-----CHH-HHHHHHHHHHH
Confidence            74     34333 3456789999999999999994 321 00              0000     000 11234459999


Q ss_pred             HcCCcceeEEEccC---ceeEEEEe
Q 018405          334 KAGFKGVNYEYGAC---NLYVMEFL  355 (356)
Q Consensus       334 ~aGf~~~~~~~~~~---~~~vi~~~  355 (356)
                      ++||+.++......   ++..+.++
T Consensus       200 ~aGF~~i~~~~l~p~~~~h~~~v~~  224 (226)
T PRK04266        200 EGGFEILEVVDLEPYHKDHAAVVAR  224 (226)
T ss_pred             HcCCeEEEEEcCCCCcCCeEEEEEE
Confidence            99999998877643   25555443

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.46  E-value=9.7e-13  Score=118.68  Aligned_cols=132  Identities=22%  Similarity=0.181  Sum_probs=99.3

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEEEecccccC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTILMKWVLSS  263 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~  263 (356)
                      .++.+|||||||+|..+..+++.  +.+++++|. +.+++.+++.     -++++...|+.. +.++. |+|++..++|+
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~  196 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF  196 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence            34569999999999999999884  578999996 7777765432     257788888877 44444 99999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE  343 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  343 (356)
                      +++++...+++++++.|+|||++++++....+....          .      .+....++++|+.++++.  |++++..
T Consensus       197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~----------~------~p~~~~~~~~el~~~~~~--~~i~~~~  258 (287)
T PRK12335        197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPC----------P------MPFSFTFKEGELKDYYQD--WEIVKYN  258 (287)
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCC----------C------CCCCcccCHHHHHHHhCC--CEEEEEe
Confidence            988889999999999999999988876554332110          0      011223678899999864  8877653

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.46  E-value=2e-12  Score=113.01  Aligned_cols=149  Identities=17%  Similarity=0.112  Sum_probs=99.5

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCCCcEEEeccccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPEADTILMKWVLS  262 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~D~i~~~~vlh  262 (356)
                      ..+..+|||||||+|.++..+++..  .+++++|. +.+++.++++       +++.+..+|+.......|+|++..++|
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~  138 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI  138 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence            3466899999999999999999865  45899996 7777777543       378999999433322349999999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhh-hhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405          263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTIC-LFQVPHGRERTKQEYSELAIKAGFKGVN  341 (356)
Q Consensus       263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~ll~~aGf~~~~  341 (356)
                      |+++++...+++++.+.+++++ ++.....   ..   ...........+. ..........+.++|.++++++||++.+
T Consensus       139 ~~~~~~~~~~l~~l~~~~~~~~-~i~~~~~---~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  211 (230)
T PRK07580        139 HYPQEDAARMLAHLASLTRGSL-IFTFAPY---TP---LLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVR  211 (230)
T ss_pred             cCCHHHHHHHHHHHHhhcCCeE-EEEECCc---cH---HHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEe
Confidence            9998889999999999775433 3332211   10   0000000000000 0000122345789999999999999999


Q ss_pred             EEEccCc
Q 018405          342 YEYGACN  348 (356)
Q Consensus       342 ~~~~~~~  348 (356)
                      +.+...+
T Consensus       212 ~~~~~~~  218 (230)
T PRK07580        212 TERISSG  218 (230)
T ss_pred             eeeccch
Confidence            8776543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.45  E-value=1e-12  Score=115.08  Aligned_cols=153  Identities=17%  Similarity=0.106  Sum_probs=102.5

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHh------CCCCC-CceEEEccCCC-CCCCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKN------APSYL-GIEHVGGDFFE-SVPEA  252 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~------a~~~~-~v~~~~~D~~~-~~~~~  252 (356)
                      ..+...++.+ .+++|||||||.|.++.+++.+.|. .++++|. +....+      ....+ .+.+...-+.+ +....
T Consensus       105 ~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~  182 (315)
T PF08003_consen  105 DRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA  182 (315)
T ss_pred             HHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence            3444445423 5689999999999999999997654 5889993 332222      11112 23333223333 33333


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC-CccCCHHHHHH
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH-GRERTKQEYSE  330 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~e~~~  330 (356)
                       |+|+|..||+|..+  ....|+.+++.|+|||.+++-..+.+.+......+.   ..+-.|    +| -..+|...+..
T Consensus       183 FDtVF~MGVLYHrr~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~---~rYa~m----~nv~FiPs~~~L~~  253 (315)
T PF08003_consen  183 FDTVFSMGVLYHRRS--PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE---DRYAKM----RNVWFIPSVAALKN  253 (315)
T ss_pred             cCEEEEeeehhccCC--HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC---CcccCC----CceEEeCCHHHHHH
Confidence             99999999999966  799999999999999999997777765433221110   011111    11 23468999999


Q ss_pred             HHHHcCCcceeEEEc
Q 018405          331 LAIKAGFKGVNYEYG  345 (356)
Q Consensus       331 ll~~aGf~~~~~~~~  345 (356)
                      |++++||+.++++..
T Consensus       254 wl~r~gF~~v~~v~~  268 (315)
T PF08003_consen  254 WLERAGFKDVRCVDV  268 (315)
T ss_pred             HHHHcCCceEEEecC
Confidence            999999999998765

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.44  E-value=3.5e-12  Score=107.01  Aligned_cols=133  Identities=17%  Similarity=0.258  Sum_probs=103.2

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCC-CCcEEEecccccCCC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVP-EADTILMKWVLSSFD  265 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~-~~D~i~~~~vlh~~~  265 (356)
                      +..+|||+|||+|.++..+++..+  +++++|. +.+++.++++     .+++++.+|..+..+ ..|+|+++...|+.+
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~   96 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE   96 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence            457899999999999999999876  8999996 8887776543     357888899877333 349999998887765


Q ss_pred             hH-------------------HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHH
Q 018405          266 DE-------------------QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQ  326 (356)
Q Consensus       266 ~~-------------------~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  326 (356)
                      ++                   -...+|+++.+.|+|||++++++....                             ...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~  147 (179)
T TIGR00537        97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEP  147 (179)
T ss_pred             chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChH
Confidence            32                   135789999999999999999763221                             246


Q ss_pred             HHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          327 EYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       327 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      ++.+.+++.||+...+.....++-.+.++|
T Consensus       148 ~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~  177 (179)
T TIGR00537       148 DTFDKLDERGFRYEIVAERGLFFEELFAIK  177 (179)
T ss_pred             HHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence            788999999999998888777766666654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.44  E-value=1e-13  Score=104.89  Aligned_cols=88  Identities=22%  Similarity=0.392  Sum_probs=72.9

Q ss_pred             EEEEcCCccHHHHHHHHhC---CCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC--cEEEec-ccccC
Q 018405          197 LVDVGGGLGATLNMIISKY---PRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA--DTILMK-WVLSS  263 (356)
Q Consensus       197 vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~--D~i~~~-~vlh~  263 (356)
                      |||+|||+|..+..+.+.+   |..+++++|+ +.+++.++++     .++++++.|+.+ ++...  |+|++. .++||
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            7999999999999999987   5689999996 8888877653     478999999988 54443  999995 55999


Q ss_pred             CChHHHHHHHHHHHHhCCCCC
Q 018405          264 FDDEQSLKLLKNCYKALPDGG  284 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG  284 (356)
                      +++++..++|+++.+.|+|||
T Consensus        81 ~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   81 LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999997

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.42  E-value=1e-12  Score=110.30  Aligned_cols=145  Identities=25%  Similarity=0.319  Sum_probs=105.7

Q ss_pred             ceEEEEcCCccHHHHHHHHhCCC--CeEEEccc-hHHHHhCCCC-----CCceEEEccCCCC-----CCCC--cEEEecc
Q 018405          195 KKLVDVGGGLGATLNMIISKYPR--IKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFES-----VPEA--DTILMKW  259 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~-----~~~~--D~i~~~~  259 (356)
                      .+||+||||.|....-+++..|+  +++..+|. |..++..++.     .++..-+.|+..+     .+.+  |+|++.+
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF  152 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF  152 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence            48999999999999999999988  89999996 8888777654     3555555666542     2233  9999999


Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCC---ccCCHHHHHHHHHHcC
Q 018405          260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHG---RERTKQEYSELAIKAG  336 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~~e~~~ll~~aG  336 (356)
                      +|..++.+....++++++++|||||.|++.|....+-....  ......++-..... ..|   ...+.+++.+++++||
T Consensus       153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR--F~~~~~i~~nfYVR-gDGT~~YfF~~eeL~~~f~~ag  229 (264)
T KOG2361|consen  153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR--FKKGQCISENFYVR-GDGTRAYFFTEEELDELFTKAG  229 (264)
T ss_pred             EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh--ccCCceeecceEEc-cCCceeeeccHHHHHHHHHhcc
Confidence            99999999999999999999999999999987654321000  00011111111111 122   3458999999999999


Q ss_pred             CcceeE
Q 018405          337 FKGVNY  342 (356)
Q Consensus       337 f~~~~~  342 (356)
                      |..++.
T Consensus       230 f~~~~~  235 (264)
T KOG2361|consen  230 FEEVQL  235 (264)
T ss_pred             cchhcc
Confidence            988764

>TIGR03438 probable methyltransferase

Probab=99.42  E-value=1.7e-12  Score=117.74  Aligned_cols=104  Identities=16%  Similarity=0.302  Sum_probs=81.4

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-----CC--ceEEEccCCCC--CC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-----LG--IEHVGGDFFES--VP  250 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-----~~--v~~~~~D~~~~--~~  250 (356)
                      ..+++.++   +..+|||+|||+|..+..|+++.+ ..+++++|+ +.+++.+.++     ++  +.++.+|+.+.  .+
T Consensus        55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~  131 (301)
T TIGR03438        55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP  131 (301)
T ss_pred             HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence            34444443   567899999999999999999987 688999996 7777666432     33  56688999762  22


Q ss_pred             C-----C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          251 E-----A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       251 ~-----~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      .     . .++++..+++++++++...+|+++++.|+|||.+++
T Consensus       132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            1     2 355666889999999999999999999999999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.41  E-value=3.2e-12  Score=112.02  Aligned_cols=147  Identities=17%  Similarity=0.072  Sum_probs=98.8

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-C--CCCC-cEEEeccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-S--VPEA-DTILMKWV  260 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~--~~~~-D~i~~~~v  260 (356)
                      ..+..+|||||||+|.++..+++.  ..+++++|. +..++.++++     .+++++..|+.+ +  .+.. |+|++.++
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~  123 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM  123 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence            446789999999999999988875  467899996 6766666532     346777777665 2  2223 99999999


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhh-hhhhhhhhhhc--CCCccCCHHHHHHHHHHcCC
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREI-SILDTICLFQV--PHGRERTKQEYSELAIKAGF  337 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~t~~e~~~ll~~aGf  337 (356)
                      +++.++  ...+|+++.+.|+|||++++........   ....... ...........  ......+.++|.++++++||
T Consensus       124 l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  198 (233)
T PRK05134        124 LEHVPD--PASFVRACAKLVKPGGLVFFSTLNRNLK---SYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL  198 (233)
T ss_pred             hhccCC--HHHHHHHHHHHcCCCcEEEEEecCCChH---HHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence            999865  6789999999999999999875432110   0000000 00000000000  01234588999999999999


Q ss_pred             cceeEEE
Q 018405          338 KGVNYEY  344 (356)
Q Consensus       338 ~~~~~~~  344 (356)
                      +++....
T Consensus       199 ~~v~~~~  205 (233)
T PRK05134        199 EVQDITG  205 (233)
T ss_pred             eEeeeee
Confidence            9987754

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.41  E-value=2.7e-12  Score=116.04  Aligned_cols=146  Identities=12%  Similarity=0.059  Sum_probs=94.7

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----------CCceEEEccCCCCCCCCcEEEeccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----------LGIEHVGGDFFESVPEADTILMKWV  260 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~~~~~~D~i~~~~v  260 (356)
                      +..+|||||||+|.++..+++.  +.+++++|+ +.+++.++++           .++++...|+.+.....|+|+|..+
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v  221 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV  221 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence            4579999999999999999985  568999996 8888776543           2467888887543222399999999


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhh--cCCCccCCHHHHHHHHHHcCCc
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQ--VPHGRERTKQEYSELAIKAGFK  338 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aGf~  338 (356)
                      +||++++....+++.+.+. .+||. +|..  .+..    ..........-.+...  .......+++++.++++++||+
T Consensus       222 L~H~p~~~~~~ll~~l~~l-~~g~l-iIs~--~p~~----~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~  293 (315)
T PLN02585        222 LIHYPQDKADGMIAHLASL-AEKRL-IISF--APKT----LYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWK  293 (315)
T ss_pred             EEecCHHHHHHHHHHHHhh-cCCEE-EEEe--CCcc----hHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCE
Confidence            9999987777888888864 55544 4422  1111    0000000000000000  0012234799999999999999


Q ss_pred             ceeEEEccCc
Q 018405          339 GVNYEYGACN  348 (356)
Q Consensus       339 ~~~~~~~~~~  348 (356)
                      +....-....
T Consensus       294 v~~~~~~~~~  303 (315)
T PLN02585        294 VARREMTATQ  303 (315)
T ss_pred             EEEEEEeecc
Confidence            8865544433

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.38  E-value=9.6e-12  Score=104.10  Aligned_cols=91  Identities=24%  Similarity=0.205  Sum_probs=72.2

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------CCCceEEEccCCC-CCCC-CcEEEecccccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------YLGIEHVGGDFFE-SVPE-ADTILMKWVLSS  263 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~~~-~D~i~~~~vlh~  263 (356)
                      +..+|||||||+|..+..++...|+.+++++|. +.+++.+++      .++++++.+|+.+ .... .|+|++.. +++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~  120 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS  120 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence            368999999999999999998889999999996 666654432      2569999999887 3222 39998866 544


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                           ...+++.+++.|+|||++++.
T Consensus       121 -----~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       121 -----LNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             -----HHHHHHHHHHhcCCCCEEEEE
Confidence                 356788899999999999985

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.38  E-value=1.8e-12  Score=108.54  Aligned_cols=137  Identities=20%  Similarity=0.280  Sum_probs=94.7

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-----CCCc-eEEEccCCCCCCC--C-cEEEeccccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-----YLGI-EHVGGDFFESVPE--A-DTILMKWVLS  262 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v-~~~~~D~~~~~~~--~-D~i~~~~vlh  262 (356)
                      +..+.||+|+|.|..+..++..+ --++-.+|. +..++.|++     .+++ ++.+..+.+-.|+  . |+|++.+++-
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg  133 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG  133 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence            46799999999999999887633 124555563 777777763     2343 4444444442232  3 9999999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeE
Q 018405          263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNY  342 (356)
Q Consensus       263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~  342 (356)
                      |++|++..++|++|+++|+|+|.++|-|.+...+.         ..+|-.     .+.-.|+.+.|.++|++||+++++.
T Consensus       134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~~-----DsSvTRs~~~~~~lF~~AGl~~v~~  199 (218)
T PF05891_consen  134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDEE-----DSSVTRSDEHFRELFKQAGLRLVKE  199 (218)
T ss_dssp             GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEETT-----TTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred             cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCCc-----cCeeecCHHHHHHHHHHcCCEEEEe
Confidence            99999999999999999999999999998876431         123321     2455689999999999999999975


Q ss_pred             EE
Q 018405          343 EY  344 (356)
Q Consensus       343 ~~  344 (356)
                      ..
T Consensus       200 ~~  201 (218)
T PF05891_consen  200 EK  201 (218)
T ss_dssp             EE
T ss_pred             cc
Confidence            44

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.37  E-value=3.5e-11  Score=100.90  Aligned_cols=117  Identities=22%  Similarity=0.177  Sum_probs=90.7

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC-cEEEecccccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA-DTILMKWVLSS  263 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~  263 (356)
                      +..+|||||||+|..+..++...|+.+++++|. +.+++.++++      ++++++.+|+.+ +..+. |+|++...   
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~---  121 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV---  121 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence            478999999999999999999999999999996 7777766542      458999999877 33323 99998652   


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE  343 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  343 (356)
                         .....+++.+++.|+|||++++++...                              ...++.++.++.|+++.+++
T Consensus       122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------------------~~~~l~~~~~~~~~~~~~~~  168 (187)
T PRK00107        122 ---ASLSDLVELCLPLLKPGGRFLALKGRD------------------------------PEEEIAELPKALGGKVEEVI  168 (187)
T ss_pred             ---cCHHHHHHHHHHhcCCCeEEEEEeCCC------------------------------hHHHHHHHHHhcCceEeeeE
Confidence               235789999999999999999864221                              13456677777798877765


Q ss_pred             Ec
Q 018405          344 YG  345 (356)
Q Consensus       344 ~~  345 (356)
                      -.
T Consensus       169 ~~  170 (187)
T PRK00107        169 EL  170 (187)
T ss_pred             EE
Confidence            54

>PLN03075 nicotianamine synthase; Provisional

Probab=99.37  E-value=3.7e-12  Score=112.93  Aligned_cols=99  Identities=18%  Similarity=0.234  Sum_probs=80.2

Q ss_pred             CCCCceEEEEcCCccHHHHH--HHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCCCC--CC-cEEE
Q 018405          191 FEHVKKLVDVGGGLGATLNM--IISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFESVP--EA-DTIL  256 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~~--~~-D~i~  256 (356)
                      ..++.+|+|||||.|.++..  ++..+|+.+++++|. +.+++.|++.        ++++|+.+|..+..+  .. |+|+
T Consensus       121 ~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        121 NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence            34789999999998854333  335689999999996 8777766542        579999999987332  23 9999


Q ss_pred             ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +. ++|+|+.++..++|+++++.|+|||.+++--
T Consensus       201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             Ee-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            99 9999987779999999999999999999943

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.35  E-value=2.5e-12  Score=105.86  Aligned_cols=135  Identities=20%  Similarity=0.233  Sum_probs=95.4

Q ss_pred             HhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCCCCCCC--cEEEecc
Q 018405          187 SYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFESVPEA--DTILMKW  259 (356)
Q Consensus       187 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~~~~~~--D~i~~~~  259 (356)
                      .++ -....+++|+|||.|.++..|+.+..  +.+++|. +..++.|+++    ++|+++..|+-..+|++  |+|+++.
T Consensus        38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE  114 (201)
T PF05401_consen   38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE  114 (201)
T ss_dssp             HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred             hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence            466 55678999999999999999998763  6888886 8888877653    78999999998866655  9999999


Q ss_pred             cccCCCh-HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405          260 VLSSFDD-EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK  338 (356)
Q Consensus       260 vlh~~~~-~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  338 (356)
                      ++|++++ ++...+++++.++|+|||.+++.....            .....     +   |.....+.+.++|.+. |.
T Consensus       115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd------------~~c~~-----w---gh~~ga~tv~~~~~~~-~~  173 (201)
T PF05401_consen  115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD------------ANCRR-----W---GHAAGAETVLEMLQEH-LT  173 (201)
T ss_dssp             -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H------------HHHHH-----T---T-S--HHHHHHHHHHH-SE
T ss_pred             HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC------------Ccccc-----c---CcccchHHHHHHHHHH-hh
Confidence            9999985 678899999999999999999977521            01111     1   2223577888888764 44


Q ss_pred             ceeEEEc
Q 018405          339 GVNYEYG  345 (356)
Q Consensus       339 ~~~~~~~  345 (356)
                      .++.+..
T Consensus       174 ~~~~~~~  180 (201)
T PF05401_consen  174 EVERVEC  180 (201)
T ss_dssp             EEEEEEE
T ss_pred             heeEEEE
Confidence            4444443

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.35  E-value=4.5e-11  Score=102.52  Aligned_cols=132  Identities=15%  Similarity=0.132  Sum_probs=98.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------------------CCCceEEEccCCC-CC--
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------------------YLGIEHVGGDFFE-SV--  249 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~-~~--  249 (356)
                      .+..+|||+|||.|..+..|++  .+..++++|+ +..++.+.+                  ..+|++.++|+++ +.  
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            4567999999999999999998  4778999996 776766311                  2468999999998 32  


Q ss_pred             -CCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405          250 -PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY  328 (356)
Q Consensus       250 -~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~  328 (356)
                       +..|.|+-..++||++.+.....++++.++|+|||+++++....++....                 .+ -...+++++
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------gp-p~~~~~~eL  172 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------GP-PFSVSPAEV  172 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------Cc-CCCCCHHHH
Confidence             22399999999999999889999999999999999988876554321100                 00 123578899


Q ss_pred             HHHHHHcCCcceeEEE
Q 018405          329 SELAIKAGFKGVNYEY  344 (356)
Q Consensus       329 ~~ll~~aGf~~~~~~~  344 (356)
                      .++|.. +|.+..+..
T Consensus       173 ~~~f~~-~~~i~~~~~  187 (213)
T TIGR03840       173 EALYGG-HYEIELLES  187 (213)
T ss_pred             HHHhcC-CceEEEEee
Confidence            998863 455554433

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.30  E-value=1.8e-11  Score=113.08  Aligned_cols=107  Identities=17%  Similarity=0.220  Sum_probs=84.8

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---------CCceEEEccCCCCCCC-
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---------LGIEHVGGDFFESVPE-  251 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~~~~~-  251 (356)
                      -+++.++ .....+|||+|||+|..+..+++++|+.+++++|. +.+++.++.+         .++++...|..+..+. 
T Consensus       219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~  297 (378)
T PRK15001        219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF  297 (378)
T ss_pred             HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence            4555565 33346999999999999999999999999999996 7777776542         2678899998875433 


Q ss_pred             C-cEEEecccccC---CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          252 A-DTILMKWVLSS---FDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       252 ~-D~i~~~~vlh~---~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      . |+|+++-.+|.   ++++...++++.+++.|+|||.++++-
T Consensus       298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            3 99999755553   455567899999999999999999974

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.29  E-value=1.8e-11  Score=106.59  Aligned_cols=142  Identities=20%  Similarity=0.167  Sum_probs=97.9

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----C-CceEEEccCCC-CCC--CC-cEEEecccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----L-GIEHVGGDFFE-SVP--EA-DTILMKWVL  261 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~-~v~~~~~D~~~-~~~--~~-D~i~~~~vl  261 (356)
                      +..+|||+|||+|.++..+++..  .+++++|. +.+++.++.+     . ++++...|+.+ +.+  .. |+|++.+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            46799999999999999988854  45888996 6666665442     2 57888888765 322  33 999999999


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh-hhhhhcC-----CCccCCHHHHHHHHHHc
Q 018405          262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT-ICLFQVP-----HGRERTKQEYSELAIKA  335 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~t~~e~~~ll~~a  335 (356)
                      |+..+  ...+|+++++.|+|||.+++.....+..      ......... ......+     .....+.++|.++++++
T Consensus       123 ~~~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  194 (224)
T TIGR01983       123 EHVPD--PQAFIRACAQLLKPGGILFFSTINRTPK------SYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA  194 (224)
T ss_pred             HhCCC--HHHHHHHHHHhcCCCcEEEEEecCCCch------HHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence            99965  6789999999999999998876432110      000000000 0000000     12235789999999999


Q ss_pred             CCcceeEEE
Q 018405          336 GFKGVNYEY  344 (356)
Q Consensus       336 Gf~~~~~~~  344 (356)
                      ||+++++..
T Consensus       195 G~~i~~~~~  203 (224)
T TIGR01983       195 GLRVKDVKG  203 (224)
T ss_pred             CCeeeeeee
Confidence            999987653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.28  E-value=5.9e-11  Score=105.14  Aligned_cols=134  Identities=23%  Similarity=0.283  Sum_probs=97.8

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCCC--
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPEA--  252 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~~--  252 (356)
                      ..+++.++  ....+|||+|||+|.++..+++.+|+.+++++|. +.+++.++..      ++++++.+|+.++.+..  
T Consensus        78 ~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~f  155 (251)
T TIGR03534        78 EAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKF  155 (251)
T ss_pred             HHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCce
Confidence            34444443  2456999999999999999999999999999996 7777766542      46899999998855433  


Q ss_pred             cEEEecccc------cCCChH------------------HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh
Q 018405          253 DTILMKWVL------SSFDDE------------------QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI  308 (356)
Q Consensus       253 D~i~~~~vl------h~~~~~------------------~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~  308 (356)
                      |+|++.-..      +.+..+                  ....+++++.+.|+|||++++...                 
T Consensus       156 D~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-----------------  218 (251)
T TIGR03534       156 DLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-----------------  218 (251)
T ss_pred             eEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-----------------
Confidence            999984332      222211                  124789999999999999887210                 


Q ss_pred             hhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEccC
Q 018405          309 LDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGAC  347 (356)
Q Consensus       309 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~  347 (356)
                                   ....+++.++++++||+.+++.....
T Consensus       219 -------------~~~~~~~~~~l~~~gf~~v~~~~d~~  244 (251)
T TIGR03534       219 -------------YDQGEAVRALFEAAGFADVETRKDLA  244 (251)
T ss_pred             -------------ccHHHHHHHHHHhCCCCceEEEeCCC
Confidence                         02346789999999999988877643

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.28  E-value=5.4e-11  Score=101.12  Aligned_cols=140  Identities=14%  Similarity=0.178  Sum_probs=92.9

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC---CCCC--CcEEEecccccCCCh
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE---SVPE--ADTILMKWVLSSFDD  266 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~--~D~i~~~~vlh~~~~  266 (356)
                      +..+|||||||+|.++..+++. ....++++|. +.+++.++. .+++++.+|+.+   +.++  .|+|++.+++||+++
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d   90 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN   90 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence            5679999999999999888765 3567889996 777777654 368888888865   2333  299999999999965


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh----------hhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018405          267 EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI----------LDTICLFQVPHGRERTKQEYSELAIKAG  336 (356)
Q Consensus       267 ~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~t~~e~~~ll~~aG  336 (356)
                        ..++|+++.+.++   .+++.-+....     ........          +...... .+....++.+++.++++++|
T Consensus        91 --~~~~l~e~~r~~~---~~ii~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ll~~~G  159 (194)
T TIGR02081        91 --PEEILDEMLRVGR---HAIVSFPNFGY-----WRVRWSILTKGRMPVTGELPYDWYN-TPNIHFCTIADFEDLCGELN  159 (194)
T ss_pred             --HHHHHHHHHHhCC---eEEEEcCChhH-----HHHHHHHHhCCccccCCCCCccccC-CCCcccCcHHHHHHHHHHCC
Confidence              6788999888655   33332111000     00000000          0000000 01234578999999999999


Q ss_pred             CcceeEEEc
Q 018405          337 FKGVNYEYG  345 (356)
Q Consensus       337 f~~~~~~~~  345 (356)
                      |++++....
T Consensus       160 f~v~~~~~~  168 (194)
T TIGR02081       160 LRILDRAAF  168 (194)
T ss_pred             CEEEEEEEe
Confidence            999887665

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.27  E-value=5e-11  Score=93.47  Aligned_cols=100  Identities=18%  Similarity=0.199  Sum_probs=77.7

Q ss_pred             HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCC-C
Q 018405          184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPE-A  252 (356)
Q Consensus       184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~-~  252 (356)
                      ++..+. ..+..+|||+|||+|..+..+++++|+.+++++|. +.+++.+++.      .+++++.+|... .  .++ .
T Consensus        11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (124)
T TIGR02469        11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP   89 (124)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence            444454 55667999999999999999999999999999996 7777665432      568888888664 1  222 3


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      |+|++....+     ...++++++++.|+|||++++.
T Consensus        90 D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        90 DRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             CEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence            9999876543     2468999999999999999873

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.27  E-value=2.1e-11  Score=101.66  Aligned_cols=108  Identities=24%  Similarity=0.290  Sum_probs=81.6

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cE
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DT  254 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~  254 (356)
                      .+++.++ .-++.++||+|||.|..+..|++  -+..++++|. +..++.+.+.     -.|+....|+.+ .+++. |+
T Consensus        21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~--~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~   97 (192)
T PF03848_consen   21 EVLEAVP-LLKPGKALDLGCGEGRNALYLAS--QGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF   97 (192)
T ss_dssp             HHHHHCT-TS-SSEEEEES-TTSHHHHHHHH--TT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred             HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence            4555555 44678999999999999999999  4678999995 5555544321     248888999988 66655 99


Q ss_pred             EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      |++..++++++.+...++++++.+.++|||.+++...+.
T Consensus        98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~  136 (192)
T PF03848_consen   98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME  136 (192)
T ss_dssp             EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred             EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence            999999999999999999999999999999999876653

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.24  E-value=3.4e-10  Score=97.47  Aligned_cols=133  Identities=16%  Similarity=0.138  Sum_probs=97.3

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------------------CCCceEEEccCCCCCC-
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------------------YLGIEHVGGDFFESVP-  250 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~~~~-  250 (356)
                      ..+..+|||+|||.|..+..|++  .+..++++|+ +..++.+..                  ..+|++.++|+++..+ 
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            34568999999999999999998  5778999996 776665411                  1468899999998322 


Q ss_pred             --CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHH
Q 018405          251 --EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQE  327 (356)
Q Consensus       251 --~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e  327 (356)
                        .. |+|+-..++|+++.+...+.++.+.++|+|||.++++....++....                 .+ -...+.++
T Consensus       113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~-----------------gP-p~~~~~~e  174 (218)
T PRK13255        113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA-----------------GP-PFSVSDEE  174 (218)
T ss_pred             cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC-----------------CC-CCCCCHHH
Confidence              12 99999999999999999999999999999999766654443322100                 00 11358899


Q ss_pred             HHHHHHHcCCcceeEEE
Q 018405          328 YSELAIKAGFKGVNYEY  344 (356)
Q Consensus       328 ~~~ll~~aGf~~~~~~~  344 (356)
                      +.+++.. +|.+..+..
T Consensus       175 l~~~~~~-~~~i~~~~~  190 (218)
T PRK13255        175 VEALYAG-CFEIELLER  190 (218)
T ss_pred             HHHHhcC-CceEEEeee
Confidence            9999863 366555443

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.24  E-value=3.7e-11  Score=99.79  Aligned_cols=98  Identities=23%  Similarity=0.337  Sum_probs=78.9

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC-CC-cEEEecccccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP-EA-DTILMKWVLSS  263 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~-D~i~~~~vlh~  263 (356)
                      +..+|||+|||+|..+..+++..|+.+++++|. +.+++.++.+      ++++++..|.++..+ .. |+|+++--+|.
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~  110 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA  110 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence            568999999999999999999999999999996 7777777542      338899999998655 33 99999988776


Q ss_pred             CCh---HHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          264 FDD---EQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       264 ~~~---~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      -.+   +-..++++.+.+.|+|||.++++-
T Consensus       111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~  140 (170)
T PF05175_consen  111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVI  140 (170)
T ss_dssp             TSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence            543   346799999999999999997744

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.23  E-value=8.5e-11  Score=107.92  Aligned_cols=108  Identities=19%  Similarity=0.266  Sum_probs=84.0

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCCC-cEE
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPEA-DTI  255 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~-D~i  255 (356)
                      .+++.++ .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.++..     -..+++..|..+..++. |+|
T Consensus       187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI  265 (342)
T PRK09489        187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI  265 (342)
T ss_pred             HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence            3444454 33456899999999999999999999999999996 7777777542     23467778887754444 999


Q ss_pred             EecccccCC---ChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          256 LMKWVLSSF---DDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       256 ~~~~vlh~~---~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      +++..+|+.   ..+...++++++.+.|+|||.++|+-.
T Consensus       266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            999998863   234578999999999999999998653

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.22  E-value=3.3e-11  Score=102.97  Aligned_cols=98  Identities=17%  Similarity=0.175  Sum_probs=76.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccC-CC-C--CCCC--cEEEecc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDF-FE-S--VPEA--DTILMKW  259 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~-~~-~--~~~~--D~i~~~~  259 (356)
                      +..+|||||||+|..+..+++.+|+.+++++|. +.+++.+++.      ++++++.+|+ .. +  .+.+  |+|++..
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            568999999999999999999999999999996 8787776532      5799999998 43 3  4433  9998865


Q ss_pred             cccCCC------hHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          260 VLSSFD------DEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       260 vlh~~~------~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      ......      ......+|++++++|+|||.+++..
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence            442211      1124689999999999999999854

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.22  E-value=5.4e-11  Score=97.74  Aligned_cols=126  Identities=17%  Similarity=0.191  Sum_probs=85.1

Q ss_pred             EEccc-hHHHHhCCCC---------CCceEEEccCCC-CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEE
Q 018405          221 INYDL-PYVIKNAPSY---------LGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLL  287 (356)
Q Consensus       221 ~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~li  287 (356)
                      +++|. +.+++.|+++         .+++++.+|+.+ ++++.  |+|++..++|+++|  ..++|++++++|||||+++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~   78 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSRVS   78 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC--HHHHHHHHHHHcCcCeEEE
Confidence            36785 8888776432         368999999988 77654  99999999999965  7899999999999999999


Q ss_pred             EEecccCCCCCCchhhhhhhh-hhhhhhhhcCC-----------CccCCHHHHHHHHHHcCCcceeEEEccCc
Q 018405          288 NVNVTIPEVPENSATSREISI-LDTICLFQVPH-----------GRERTKQEYSELAIKAGFKGVNYEYGACN  348 (356)
Q Consensus       288 i~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~  348 (356)
                      +.|...++..-.......... .-.........           ...++++++.++|+++||+.++......+
T Consensus        79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g  151 (160)
T PLN02232         79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG  151 (160)
T ss_pred             EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence            999876542100000000000 00000000000           12358999999999999999987776543

>PTZ00146 fibrillarin; Provisional

Probab=99.20  E-value=9e-10  Score=97.41  Aligned_cols=132  Identities=14%  Similarity=0.034  Sum_probs=91.3

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hH----HHHhCCCCCCceEEEccCCCCC-----CC-CcEEEec
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PY----VIKNAPSYLGIEHVGGDFFESV-----PE-ADTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~----~~~~a~~~~~v~~~~~D~~~~~-----~~-~D~i~~~  258 (356)
                      +++..+|||+|||+|.++..+++... .-+++++|+ +.    +++.+..+++|.++.+|...+.     .+ .|+|++.
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D  209 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD  209 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence            56778999999999999999999863 457899996 43    5666666688999999987532     22 3999886


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK  338 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  338 (356)
                      .. +  + ++...++.++++.|||||+++|.......              +.     .+.-..+-.+|. ++|+++||+
T Consensus       210 va-~--p-dq~~il~~na~r~LKpGG~~vI~ika~~i--------------d~-----g~~pe~~f~~ev-~~L~~~GF~  265 (293)
T PTZ00146        210 VA-Q--P-DQARIVALNAQYFLKNGGHFIISIKANCI--------------DS-----TAKPEVVFASEV-QKLKKEGLK  265 (293)
T ss_pred             CC-C--c-chHHHHHHHHHHhccCCCEEEEEEecccc--------------cc-----CCCHHHHHHHHH-HHHHHcCCc
Confidence            63 1  2 34567777899999999999993211110              10     000000111344 889999999


Q ss_pred             ceeEEEcc
Q 018405          339 GVNYEYGA  346 (356)
Q Consensus       339 ~~~~~~~~  346 (356)
                      .++.+...
T Consensus       266 ~~e~v~L~  273 (293)
T PTZ00146        266 PKEQLTLE  273 (293)
T ss_pred             eEEEEecC
Confidence            88877764

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.20  E-value=3.7e-10  Score=92.97  Aligned_cols=143  Identities=15%  Similarity=0.267  Sum_probs=98.2

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC---CCCCC--cEEEecccccCCC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE---SVPEA--DTILMKWVLSSFD  265 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~~--D~i~~~~vlh~~~  265 (356)
                      ++..||||+|||.|.++..|.+. .++++.++++ ++.+..+.+ .++.++++|+.+   .+|+.  |.|+++.+|.++.
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~   89 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR   89 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence            37799999999999999888875 6888999986 554544433 378999999987   36654  9999999999994


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEEEecccCC----------CCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018405          266 DEQSLKLLKNCYKALPDGGKLLNVNVTIPE----------VPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKA  335 (356)
Q Consensus       266 ~~~~~~~L~~~~~~L~pgG~lii~e~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a  335 (356)
                        .+.++|+++.+.   |.+.+|.=+-...          ..-+.....-+.+++      +||-...|..++++++++.
T Consensus        90 --~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd------TPNih~~Ti~DFe~lc~~~  158 (193)
T PF07021_consen   90 --RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD------TPNIHLCTIKDFEDLCREL  158 (193)
T ss_pred             --HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC------CCCcccccHHHHHHHHHHC
Confidence              478889888765   4455552211100          000000000011111      3455566999999999999


Q ss_pred             CCcceeEEEccC
Q 018405          336 GFKGVNYEYGAC  347 (356)
Q Consensus       336 Gf~~~~~~~~~~  347 (356)
                      |+++.+......
T Consensus       159 ~i~I~~~~~~~~  170 (193)
T PF07021_consen  159 GIRIEERVFLDG  170 (193)
T ss_pred             CCEEEEEEEEcC
Confidence            999999887654

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.19  E-value=4.8e-10  Score=93.05  Aligned_cols=158  Identities=16%  Similarity=0.198  Sum_probs=100.8

Q ss_pred             hhccCchHHHHHHHHHh----hhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCC
Q 018405          158 YMGVDSRFNDVFNTGML----GHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAP  233 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~  233 (356)
                      .+.++|+....|.++..    .+....+..+++.+...++...|.|+|||.+.++..+..   ..++.-+|+-.      
T Consensus        33 lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva------  103 (219)
T PF05148_consen   33 LFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA------  103 (219)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-------
T ss_pred             HHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccC------
Confidence            34456666565555544    333455677777776444567999999999999976542   34688888622      


Q ss_pred             CCCCceEEEccCCC-CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhh
Q 018405          234 SYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILD  310 (356)
Q Consensus       234 ~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~  310 (356)
                        .+-.++..|+.. |.++.  |+++++..|---   +....|+++.|.|||||.|.|.|....-               
T Consensus       104 --~n~~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~SRf---------------  163 (219)
T PF05148_consen  104 --PNPRVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKSRF---------------  163 (219)
T ss_dssp             --SSTTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG----------------
T ss_pred             --CCCCEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEecccC---------------
Confidence              133578899987 87766  999998888652   3799999999999999999999865321               


Q ss_pred             hhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          311 TICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       311 ~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                                  -..+++.+.+++.||+..........+.+.+++|
T Consensus       164 ------------~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K  197 (219)
T PF05148_consen  164 ------------ENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK  197 (219)
T ss_dssp             ------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred             ------------cCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence                        1357888999999999988766667777887765

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.18  E-value=5.8e-10  Score=100.22  Aligned_cols=135  Identities=21%  Similarity=0.266  Sum_probs=96.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC-CC-cEEEecccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP-EA-DTILMKWVL  261 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~-D~i~~~~vl  261 (356)
                      ..+..+|||+|||+|..+..++..+|..+++++|. +.+++.++++      .++.++.+|++++.+ .. |+|++.--.
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy  185 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY  185 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence            45678999999999999999999999999999996 7776666532      579999999987554 23 999884221


Q ss_pred             ------cCCCh------------------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc
Q 018405          262 ------SSFDD------------------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV  317 (356)
Q Consensus       262 ------h~~~~------------------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (356)
                            +.+..                  +...++++++.+.|+|||++++ +..                         
T Consensus       186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~-e~g-------------------------  239 (275)
T PRK09328        186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL-EIG-------------------------  239 (275)
T ss_pred             CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE-EEC-------------------------
Confidence                  11111                  2246789999999999999988 110                         


Q ss_pred             CCCccCCHHHHHHHHHHcCCcceeEEEcc-CceeEEEEe
Q 018405          318 PHGRERTKQEYSELAIKAGFKGVNYEYGA-CNLYVMEFL  355 (356)
Q Consensus       318 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~  355 (356)
                        .  ...+++.+++++.||+.+.+.... +...++.++
T Consensus       240 --~--~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~  274 (275)
T PRK09328        240 --Y--DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR  274 (275)
T ss_pred             --c--hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence              0  124568899999999977775532 333344443

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.18  E-value=5.7e-10  Score=95.67  Aligned_cols=106  Identities=18%  Similarity=0.285  Sum_probs=78.7

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccchHHHHhCCCCCCceEEEccCCCC---------CCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDLPYVIKNAPSYLGIEHVGGDFFES---------VPE  251 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~~~  251 (356)
                      ..+.+.+.-+++..+|||||||+|.++..+++.. +..+++++|+.++    ...++++++.+|+.++         .+.
T Consensus        40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~  115 (209)
T PRK11188         40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGD  115 (209)
T ss_pred             HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCC
Confidence            3444445434677899999999999999999986 4568999997442    2235799999999873         333


Q ss_pred             -C-cEEEecccccCCChHH---------HHHHHHHHHHhCCCCCEEEEEec
Q 018405          252 -A-DTILMKWVLSSFDDEQ---------SLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       252 -~-D~i~~~~vlh~~~~~~---------~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                       . |+|++....|...+..         ...+|+.+++.|+|||.+++..+
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~  166 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF  166 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence             2 9999977666543321         25689999999999999999654

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.16  E-value=2e-10  Score=102.93  Aligned_cols=91  Identities=18%  Similarity=0.260  Sum_probs=73.6

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCC---eEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--cEEEecccccCC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRI---KGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA--DTILMKWVLSSF  264 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~  264 (356)
                      +..+|||||||+|.++..+++.+|..   .++++|. +.+++.|.++ +++.+..+|..+ |++++  |+|++...-   
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~---  161 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP---  161 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence            45789999999999999999888753   6899996 8888887654 789999999888 77654  999875431   


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          265 DDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       265 ~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                            ..+++++++|+|||+++++.+.
T Consensus       162 ------~~~~e~~rvLkpgG~li~~~p~  183 (272)
T PRK11088        162 ------CKAEELARVVKPGGIVITVTPG  183 (272)
T ss_pred             ------CCHHHHHhhccCCCEEEEEeCC
Confidence                  2357899999999999997643

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.16  E-value=2.6e-10  Score=97.73  Aligned_cols=100  Identities=20%  Similarity=0.168  Sum_probs=77.0

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCC-
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVP-  250 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~-  250 (356)
                      ...+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.++++       ++++++.+|..+..+ 
T Consensus        61 ~~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~  139 (205)
T PRK13944         61 VAMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK  139 (205)
T ss_pred             HHHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence            345555555 66778999999999999999988764 558999996 7777766542       358899999987333 


Q ss_pred             C--CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          251 E--ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       251 ~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      .  .|+|++..+++++++        ++.+.|+|||++++.
T Consensus       140 ~~~fD~Ii~~~~~~~~~~--------~l~~~L~~gG~lvi~  172 (205)
T PRK13944        140 HAPFDAIIVTAAASTIPS--------ALVRQLKDGGVLVIP  172 (205)
T ss_pred             CCCccEEEEccCcchhhH--------HHHHhcCcCcEEEEE
Confidence            2  299999999887653        577889999999884

>PRK14968 putative methyltransferase; Provisional

Probab=99.14  E-value=2e-09  Score=90.86  Aligned_cols=123  Identities=22%  Similarity=0.319  Sum_probs=90.3

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CC-ceEEEccCCCCCCC-C-cEEEeccc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LG-IEHVGGDFFESVPE-A-DTILMKWV  260 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~D~~~~~~~-~-D~i~~~~v  260 (356)
                      .+..+|||+|||+|.++..++..  +.+++++|. +.+++.+++.       ++ +.++.+|+.++.++ . |+|++...
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p   99 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP   99 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence            45679999999999999999987  578999996 7777766432       22 88899998885544 3 99998655


Q ss_pred             ccCCC-------------------hHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCc
Q 018405          261 LSSFD-------------------DEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGR  321 (356)
Q Consensus       261 lh~~~-------------------~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (356)
                      .....                   ......+++++.+.|+|||.++++....                            
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------------------------  151 (188)
T PRK14968        100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------------------------  151 (188)
T ss_pred             cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence            43211                   1234678999999999999988753210                            


Q ss_pred             cCCHHHHHHHHHHcCCcceeEEEc
Q 018405          322 ERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       322 ~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                       ...+++.++++++||++..+...
T Consensus       152 -~~~~~l~~~~~~~g~~~~~~~~~  174 (188)
T PRK14968        152 -TGEDEVLEYLEKLGFEAEVVAEE  174 (188)
T ss_pred             -CCHHHHHHHHHHCCCeeeeeeec
Confidence             12457888999999998876554

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.13  E-value=1.7e-09  Score=97.49  Aligned_cols=94  Identities=19%  Similarity=0.270  Sum_probs=75.2

Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC--CcEEEec------
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE--ADTILMK------  258 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~------  258 (356)
                      .+|||+|||+|.++..++..+|+.+++++|. +.+++.++++       .+++++.+|++++.+.  .|+|+++      
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence            6999999999999999999999999999996 7777776543       3599999999886554  3999885      


Q ss_pred             -------ccccCCCh----------HHHHHHHHHHHHhCCCCCEEEE
Q 018405          259 -------WVLSSFDD----------EQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       259 -------~vlh~~~~----------~~~~~~L~~~~~~L~pgG~lii  288 (356)
                             .+.+|-|.          +....+++++.+.|+|||++++
T Consensus       196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~  242 (284)
T TIGR00536       196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC  242 (284)
T ss_pred             chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence                   23343331          1466899999999999998876

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.13  E-value=1.2e-10  Score=98.86  Aligned_cols=97  Identities=15%  Similarity=0.265  Sum_probs=75.2

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C---CCCC--cEEEecc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S---VPEA--DTILMKW  259 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~---~~~~--D~i~~~~  259 (356)
                      ...++||||||+|.++..+++++|+..++++|. +.+++.+.+.      .+++++.+|+.+ +   .+.+  |.|++..
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            456999999999999999999999999999996 7777766432      579999999875 2   3442  8887765


Q ss_pred             cccCCChHH-------HHHHHHHHHHhCCCCCEEEEEe
Q 018405          260 VLSSFDDEQ-------SLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       260 vlh~~~~~~-------~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      ..+ |+...       ...+++.++++|+|||.+++..
T Consensus        96 pdp-w~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t  132 (194)
T TIGR00091        96 PDP-WPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT  132 (194)
T ss_pred             CCc-CCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence            433 22111       1579999999999999998865

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.13  E-value=4.9e-10  Score=96.40  Aligned_cols=101  Identities=19%  Similarity=0.194  Sum_probs=77.9

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCC-CC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESV-PE  251 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~-~~  251 (356)
                      ...+++.+. +.+..+|||||||+|..+..+++.. ++.+++++|. +.+++.++++      ++++++.+|..... +.
T Consensus        65 ~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~  143 (212)
T PRK13942         65 VAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN  143 (212)
T ss_pred             HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence            455666666 7788999999999999999888875 4468999996 8888777543      57999999988733 33


Q ss_pred             C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +  |+|++....++.+        +.+.+.|+|||++++..
T Consensus       144 ~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        144 APYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence            3  9999987776553        34667899999998853

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.12  E-value=4.1e-09  Score=91.65  Aligned_cols=156  Identities=19%  Similarity=0.232  Sum_probs=111.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCC--CeEEEccc-hHHHHhCCCC------CCc-eEEEccCCCC------CCCCcE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPR--IKGINYDL-PYVIKNAPSY------LGI-EHVGGDFFES------VPEADT  254 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~------~~v-~~~~~D~~~~------~~~~D~  254 (356)
                      -..+.+||||.||+|.+....+..+|.  .++...|. +..++..++.      ..+ +|..+|.++.      .|..++
T Consensus       133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l  212 (311)
T PF12147_consen  133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL  212 (311)
T ss_pred             cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence            347789999999999999999999998  67888886 6656655432      444 9999999983      233499


Q ss_pred             EEecccccCCChHH-HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCC-----ccCCHHHH
Q 018405          255 ILMKWVLSSFDDEQ-SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHG-----RERTKQEY  328 (356)
Q Consensus       255 i~~~~vlh~~~~~~-~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~t~~e~  328 (356)
                      ++.+.....++|.+ +...|+.+++++.|||.+|.-..-..+..     ........    . +.+|     +.||..|+
T Consensus       213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl-----e~IAr~Lt----s-Hr~g~~WvMRrRsq~Em  282 (311)
T PF12147_consen  213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL-----EMIARVLT----S-HRDGKAWVMRRRSQAEM  282 (311)
T ss_pred             EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch-----HHHHHHHh----c-ccCCCceEEEecCHHHH
Confidence            99999999999877 44689999999999999988543222210     00111111    0 1122     35799999


Q ss_pred             HHHHHHcCCcceeEEE-ccCceeEEEEeC
Q 018405          329 SELAIKAGFKGVNYEY-GACNLYVMEFLK  356 (356)
Q Consensus       329 ~~ll~~aGf~~~~~~~-~~~~~~vi~~~~  356 (356)
                      .+++++|||+-++..- ..+-++|..++|
T Consensus       283 D~Lv~~aGF~K~~q~ID~~GIFTVSlA~r  311 (311)
T PF12147_consen  283 DQLVEAAGFEKIDQRIDEWGIFTVSLARR  311 (311)
T ss_pred             HHHHHHcCCchhhheeccCCceEEEeecC
Confidence            9999999998776443 345677776654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.12  E-value=1.2e-09  Score=94.26  Aligned_cols=136  Identities=18%  Similarity=0.171  Sum_probs=102.9

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-C--CCC--CcEEEe
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-S--VPE--ADTILM  257 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~--~~~--~D~i~~  257 (356)
                      .....+|||+|||+|..+..++++.++++++++++ +.+.+.|++.       +||++++.|+.+ .  .+.  .|+|+|
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~  121 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC  121 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence            44589999999999999999999999999999997 7777777653       789999999987 2  222  399998


Q ss_pred             cccccCCChH----------------HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCc
Q 018405          258 KWVLSSFDDE----------------QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGR  321 (356)
Q Consensus       258 ~~vlh~~~~~----------------~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (356)
                      +--.+.-.+.                ....+++.+.+.|||||.+.++-..-                            
T Consensus       122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e----------------------------  173 (248)
T COG4123         122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE----------------------------  173 (248)
T ss_pred             CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH----------------------------
Confidence            7655543322                25789999999999999999854210                            


Q ss_pred             cCCHHHHHHHHHHcCCcceeEEEcc------CceeEEEEeC
Q 018405          322 ERTKQEYSELAIKAGFKGVNYEYGA------CNLYVMEFLK  356 (356)
Q Consensus       322 ~~t~~e~~~ll~~aGf~~~~~~~~~------~~~~vi~~~~  356 (356)
                        ...+|.+++++.+|...++....      ...-++++.|
T Consensus       174 --rl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k  212 (248)
T COG4123         174 --RLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIK  212 (248)
T ss_pred             --HHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEec
Confidence              13578888888888888776653      3444666554

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.12  E-value=8.7e-10  Score=97.47  Aligned_cols=115  Identities=23%  Similarity=0.238  Sum_probs=82.1

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCc----eEEEccCCCCCCCCcEEEecccccC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGI----EHVGGDFFESVPEADTILMKWVLSS  263 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v----~~~~~D~~~~~~~~D~i~~~~vlh~  263 (356)
                      .+..+|||||||+|.++..+++..+ .+++++|. +.+++.++++   .++    .+..+|.     ..|+|+++...  
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~--  189 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA--  189 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence            4678999999999999988776544 36999996 8888777653   222    2222221     34999875332  


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE  343 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  343 (356)
                         +....+++++.+.|+|||++++.+...                             ...+++.+.+++.||++++..
T Consensus       190 ---~~~~~l~~~~~~~LkpgG~lilsgi~~-----------------------------~~~~~v~~~l~~~Gf~~~~~~  237 (250)
T PRK00517        190 ---NPLLELAPDLARLLKPGGRLILSGILE-----------------------------EQADEVLEAYEEAGFTLDEVL  237 (250)
T ss_pred             ---HHHHHHHHHHHHhcCCCcEEEEEECcH-----------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence               335788999999999999999854321                             124678889999999988876


Q ss_pred             Ecc
Q 018405          344 YGA  346 (356)
Q Consensus       344 ~~~  346 (356)
                      ...
T Consensus       238 ~~~  240 (250)
T PRK00517        238 ERG  240 (250)
T ss_pred             EeC
Confidence            653

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.09  E-value=9.2e-10  Score=90.03  Aligned_cols=99  Identities=21%  Similarity=0.245  Sum_probs=81.6

Q ss_pred             HHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC---CCCCCcE
Q 018405          185 LESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE---SVPEADT  254 (356)
Q Consensus       185 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~~~~D~  254 (356)
                      +..+. +.+..+++|||||+|..+.+++...|..+++.+|. ++.++..+++      ++++++.+|.-+   +.+..|.
T Consensus        27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da  105 (187)
T COG2242          27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA  105 (187)
T ss_pred             HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence            45565 77889999999999999999999999999999995 7766665543      789999999766   2334599


Q ss_pred             EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      |++...-.      ...+|+.+...|+|||++++.-
T Consensus       106 iFIGGg~~------i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242         106 IFIGGGGN------IEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             EEECCCCC------HHHHHHHHHHHcCcCCeEEEEe
Confidence            99987722      5899999999999999999943

>PHA03411 putative methyltransferase; Provisional

Probab=99.09  E-value=1.4e-09  Score=95.22  Aligned_cols=124  Identities=14%  Similarity=0.166  Sum_probs=92.4

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC-cEEEecccccCCChHH
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA-DTILMKWVLSSFDDEQ  268 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~~~~  268 (356)
                      ...+|||+|||+|.++..++.+.+..+++++|. +.+++.+++. ++++++.+|+.+ ..+.. |+|+++-.+++.+.++
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d  143 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD  143 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence            457999999999999999988887789999996 8888887654 679999999988 33333 9999988888765432


Q ss_pred             H------------------HHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018405          269 S------------------LKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSE  330 (356)
Q Consensus       269 ~------------------~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~  330 (356)
                      .                  .+.++.....|+|+|.++++   ....+          .          .....+++++++
T Consensus       144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss~~----------~----------y~~sl~~~~y~~  200 (279)
T PHA03411        144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSGRP----------Y----------YDGTMKSNKYLK  200 (279)
T ss_pred             hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---Eeccc----------c----------ccccCCHHHHHH
Confidence            2                  35667777888888877665   11110          0          011246889999


Q ss_pred             HHHHcCCcc
Q 018405          331 LAIKAGFKG  339 (356)
Q Consensus       331 ll~~aGf~~  339 (356)
                      +++++||..
T Consensus       201 ~l~~~g~~~  209 (279)
T PHA03411        201 WSKQTGLVT  209 (279)
T ss_pred             HHHhcCcEe
Confidence            999999864

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.09  E-value=9.1e-10  Score=95.13  Aligned_cols=100  Identities=15%  Similarity=0.145  Sum_probs=76.8

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC--
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP--  250 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~--  250 (356)
                      ...+++.+. ..+..+|||||||+|..+..+++..+ +.+++++|. +.+++.++++      ++++++.+|..+..+  
T Consensus        66 ~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~  144 (215)
T TIGR00080        66 VAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL  144 (215)
T ss_pred             HHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence            345566665 67889999999999999999998865 467899995 8887776543      579999999887322  


Q ss_pred             C-CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          251 E-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       251 ~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      . .|+|++.....+.+        +.+.+.|+|||++++.
T Consensus       145 ~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       145 APYDRIYVTAAGPKIP--------EALIDQLKEGGILVMP  176 (215)
T ss_pred             CCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence            2 39999887665543        4577889999999884

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.07  E-value=3.3e-09  Score=98.34  Aligned_cols=126  Identities=21%  Similarity=0.261  Sum_probs=91.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCC-C--CcEEEeccccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVP-E--ADTILMKWVLS  262 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~-~--~D~i~~~~vlh  262 (356)
                      +..+|||+|||+|.++..++...|+.+++++|. +.+++.++++     .+++++.+|+++ ..+ .  .|+|+++---.
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI  330 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI  330 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence            456999999999999999999999999999996 8888877653     368999999976 333 2  29999854211


Q ss_pred             CCCh-----------------------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC
Q 018405          263 SFDD-----------------------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH  319 (356)
Q Consensus       263 ~~~~-----------------------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (356)
                      .-.+                       +-...+++.+.+.|+|||++++ |.-.                          
T Consensus       331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~--------------------------  383 (423)
T PRK14966        331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF--------------------------  383 (423)
T ss_pred             CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc--------------------------
Confidence            0000                       1134677777889999998765 2211                          


Q ss_pred             CccCCHHHHHHHHHHcCCcceeEEEccCc
Q 018405          320 GRERTKQEYSELAIKAGFKGVNYEYGACN  348 (356)
Q Consensus       320 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~  348 (356)
                         ...+.+.+++++.||+.+++.+...+
T Consensus       384 ---~Q~e~V~~ll~~~Gf~~v~v~kDl~G  409 (423)
T PRK14966        384 ---DQGAAVRGVLAENGFSGVETLPDLAG  409 (423)
T ss_pred             ---cHHHHHHHHHHHCCCcEEEEEEcCCC
Confidence               12467888999999998888776443

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.04  E-value=1.8e-09  Score=97.09  Aligned_cols=96  Identities=19%  Similarity=0.260  Sum_probs=75.1

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC--CcEEEecc---
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE--ADTILMKW---  259 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~---  259 (356)
                      +..+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++       ++++++.+|++++.+.  .|+|++.-   
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~  200 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV  200 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence            457999999999999999999999999999996 8887777543       4689999999875554  39999851   


Q ss_pred             ----------cccCCCh----------HHHHHHHHHHHHhCCCCCEEEE
Q 018405          260 ----------VLSSFDD----------EQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       260 ----------vlh~~~~----------~~~~~~L~~~~~~L~pgG~lii  288 (356)
                                .+++.|.          +....+++.+.+.|+|||++++
T Consensus       201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~  249 (284)
T TIGR03533       201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV  249 (284)
T ss_pred             CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence                      1122211          1246889999999999999886

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.01  E-value=3e-09  Score=90.56  Aligned_cols=101  Identities=18%  Similarity=0.252  Sum_probs=76.9

Q ss_pred             HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC---CC-CC
Q 018405          184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES---VP-EA  252 (356)
Q Consensus       184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~~-~~  252 (356)
                      ++..+. ..+..+|||+|||+|.++..+++..|+.+++++|. +.+++.++++      ++++++.+|..+.   .. ..
T Consensus        32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~  110 (196)
T PRK07402         32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP  110 (196)
T ss_pred             HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence            444454 66778999999999999999998888899999996 8887776542      4688999987541   22 23


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      |.+++..     . .....+++++.+.|+|||++++...
T Consensus       111 d~v~~~~-----~-~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        111 DRVCIEG-----G-RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             CEEEEEC-----C-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence            6654421     1 2367899999999999999999754

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=99.01  E-value=9.5e-09  Score=87.33  Aligned_cols=158  Identities=17%  Similarity=0.227  Sum_probs=111.1

Q ss_pred             hhhhccCchHHHHHHHHHhhhhH----HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHh
Q 018405          156 YDYMGVDSRFNDVFNTGMLGHTC----VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKN  231 (356)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~  231 (356)
                      +..+..+|+....|..+......    ..+..+++.+...+....|-|+|||.+.++..     ..-.+.-+|+-.    
T Consensus       139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a----  209 (325)
T KOG3045|consen  139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVA----  209 (325)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc-----cccceeeeeeec----
Confidence            33455677777777776654322    34556666665345678999999999998862     122466677532    


Q ss_pred             CCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh
Q 018405          232 APSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI  308 (356)
Q Consensus       232 a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~  308 (356)
                          .+-+++..|+.. |.++.  |+++++..|--   .+...+++++++.|+|||.++|.|....-             
T Consensus       210 ----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~SRf-------------  269 (325)
T KOG3045|consen  210 ----VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKSRF-------------  269 (325)
T ss_pred             ----CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhhhc-------------
Confidence                255678899988 76654  99988877754   34789999999999999999998864321             


Q ss_pred             hhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          309 LDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       309 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                                    .+..++.+.+...||.+....-....+.+.++.|
T Consensus       270 --------------~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK  303 (325)
T KOG3045|consen  270 --------------SDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK  303 (325)
T ss_pred             --------------ccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence                          1234578889999999887766666777777654

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=3.8e-09  Score=92.99  Aligned_cols=109  Identities=20%  Similarity=0.234  Sum_probs=85.3

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCC-Cc
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPE-AD  253 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~-~D  253 (356)
                      +-+++.++ .....+|||+|||.|.++..+++.+|+.+++.+|. ...++.++++      .+.++...|..++..+ .|
T Consensus       148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd  226 (300)
T COG2813         148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD  226 (300)
T ss_pred             HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence            45566676 45556999999999999999999999999999996 6677777654      2335677788775444 49


Q ss_pred             EEEecccccCCC---hHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          254 TILMKWVLSSFD---DEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       254 ~i~~~~vlh~~~---~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      +|+++--+|.=-   +.-..++++.+.+.|++||.|.|+-.
T Consensus       227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            999999998632   22244899999999999999998654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.01  E-value=5e-09  Score=89.29  Aligned_cols=97  Identities=15%  Similarity=0.186  Sum_probs=74.6

Q ss_pred             HHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--C-C-CCC
Q 018405          186 ESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--S-V-PEA  252 (356)
Q Consensus       186 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~-~~~  252 (356)
                      ..+. ..+..+|||+|||+|.++..++... +..+++++|. +.+++.++++       +++.++.+|..+  + . +..
T Consensus        34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~  112 (198)
T PRK00377         34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF  112 (198)
T ss_pred             HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence            4444 6678899999999999999998764 5678999996 7777765432       468888898865  2 2 223


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      |+|++...     ..+...+|+.+.+.|+|||++++
T Consensus       113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence            99988542     13467899999999999999987

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.00  E-value=2.5e-09  Score=98.48  Aligned_cols=106  Identities=19%  Similarity=0.251  Sum_probs=78.4

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------CCCceEEEccCCC---CCCCC
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------YLGIEHVGGDFFE---SVPEA  252 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~~~~  252 (356)
                      .+++.+. ......+||||||+|.++..+++++|+..++++|. +.+++.+.+      .+++.++.+|...   .++++
T Consensus       113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~  191 (390)
T PRK14121        113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN  191 (390)
T ss_pred             HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence            3444444 23456899999999999999999999999999996 666655533      2579999999753   45544


Q ss_pred             --cEEEecccccCCChHH-----HHHHHHHHHHhCCCCCEEEEEe
Q 018405          253 --DTILMKWVLSSFDDEQ-----SLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       253 --D~i~~~~vlh~~~~~~-----~~~~L~~~~~~L~pgG~lii~e  290 (356)
                        |.|++.+... |+...     ...+|+.++++|+|||.+.+..
T Consensus       192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T  235 (390)
T PRK14121        192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRT  235 (390)
T ss_pred             ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence              9988754322 32211     2589999999999999999954

>PRK14967 putative methyltransferase; Provisional

Probab=99.00  E-value=1.2e-08  Score=88.62  Aligned_cols=102  Identities=17%  Similarity=0.163  Sum_probs=73.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCC-C-cEEEeccccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPE-A-DTILMKWVLS  262 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~-~-D~i~~~~vlh  262 (356)
                      ..+..+|||+|||+|.++..+++. +..+++++|. +.+++.++.+     .+++++.+|+.+..+. . |+|++.--.+
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~  112 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV  112 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence            456689999999999999988875 3348899996 7777655442     2477888998774443 3 9999864322


Q ss_pred             CCCh-------------------HHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          263 SFDD-------------------EQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       263 ~~~~-------------------~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      .-+.                   .....+++++.+.|+|||+++++....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~  162 (223)
T PRK14967        113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL  162 (223)
T ss_pred             CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            1110                   124578899999999999999875443

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.99  E-value=3.3e-09  Score=96.19  Aligned_cols=95  Identities=18%  Similarity=0.248  Sum_probs=74.9

Q ss_pred             CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC--CcEEEecc----
Q 018405          194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE--ADTILMKW----  259 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~----  259 (356)
                      ..+|||+|||+|.++..++..+|+.+++++|. +.+++.++++       ++++++.+|+++..+.  .|+|+++-    
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence            36899999999999999999999999999996 8888777543       4699999999875543  39999851    


Q ss_pred             ---------cccCCCh----------HHHHHHHHHHHHhCCCCCEEEE
Q 018405          260 ---------VLSSFDD----------EQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       260 ---------vlh~~~~----------~~~~~~L~~~~~~L~pgG~lii  288 (356)
                               .+++.|.          +....+++++.+.|+|||++++
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~  261 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV  261 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence                     1122221          2246889999999999999887

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.97  E-value=7.5e-09  Score=100.18  Aligned_cols=126  Identities=15%  Similarity=0.247  Sum_probs=92.4

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC--CcEEEecc---
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE--ADTILMKW---  259 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~---  259 (356)
                      +..+|||+|||+|.++..++..+|+.+++++|. +.+++.++.+       ++++++.+|+++..+.  .|+|+++-   
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi  217 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI  217 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence            346899999999999999999999999999996 7787777643       4789999998875443  39999832   


Q ss_pred             -----------cccCCCh----------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC
Q 018405          260 -----------VLSSFDD----------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP  318 (356)
Q Consensus       260 -----------vlh~~~~----------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (356)
                                 +..+.|.          +....+++.+.+.|+|||++++ |...                         
T Consensus       218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~-------------------------  271 (506)
T PRK01544        218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF-------------------------  271 (506)
T ss_pred             CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC-------------------------
Confidence                       1111111          1235678899999999999876 3110                         


Q ss_pred             CCccCCHHHHHHHHHHcCCcceeEEEccCc
Q 018405          319 HGRERTKQEYSELAIKAGFKGVNYEYGACN  348 (356)
Q Consensus       319 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~  348 (356)
                          ...+.+.+++.+.||..+.+.....+
T Consensus       272 ----~q~~~v~~~~~~~g~~~~~~~~D~~g  297 (506)
T PRK01544        272 ----KQEEAVTQIFLDHGYNIESVYKDLQG  297 (506)
T ss_pred             ----chHHHHHHHHHhcCCCceEEEecCCC
Confidence                12457788888999998887775433

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.97  E-value=5.1e-09  Score=94.45  Aligned_cols=93  Identities=19%  Similarity=0.216  Sum_probs=68.2

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC-CcEEEecccccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE-ADTILMKWVLSS  263 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~-~D~i~~~~vlh~  263 (356)
                      +..+|||||||+|.++..+++. +..+++++|. +.+++.++++       .++.+...|.....+. .|+|+++...  
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~--  235 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA--  235 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence            5689999999999999887764 4458999996 7777777543       3455555553332222 3999986543  


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                         +....+++++++.|+|||++++...
T Consensus       236 ---~~l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       236 ---EVIKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             ---HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence               3357899999999999999998654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK04457 spermidine synthase; Provisional

Probab=98.96  E-value=1.8e-09  Score=95.79  Aligned_cols=97  Identities=21%  Similarity=0.302  Sum_probs=76.3

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC---CCCCC-cEEEecc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE---SVPEA-DTILMKW  259 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~~~-D~i~~~~  259 (356)
                      +++.+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++.       ++++++.+|..+   ..++. |+|++-.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            3568999999999999999999999999999997 8888877542       679999999865   23333 9998742


Q ss_pred             ccc--CCChH-HHHHHHHHHHHhCCCCCEEEEE
Q 018405          260 VLS--SFDDE-QSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       260 vlh--~~~~~-~~~~~L~~~~~~L~pgG~lii~  289 (356)
                       .+  ..+.. ....+++++++.|+|||++++.
T Consensus       145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence             22  12211 1379999999999999999985

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.96  E-value=4.9e-09  Score=88.63  Aligned_cols=102  Identities=16%  Similarity=0.225  Sum_probs=73.9

Q ss_pred             HHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccchHHHHhCCCCCCceEEEccCCCC---------CCC-C
Q 018405          184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDLPYVIKNAPSYLGIEHVGGDFFES---------VPE-A  252 (356)
Q Consensus       184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~~~-~  252 (356)
                      +.+.+....+..+|||+|||+|.++..+++.+ +..+++++|..+..    ..++++++.+|+.++         .+. .
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDK   98 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence            44445446678999999999999999999887 56789999974322    235788999998762         233 3


Q ss_pred             -cEEEeccccc---CCC------hHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          253 -DTILMKWVLS---SFD------DEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       253 -D~i~~~~vlh---~~~------~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                       |+|++....|   .|.      .+....+|+.+++.|+|||++++.
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence             9999854322   111      112468999999999999999985

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.95  E-value=2.5e-08  Score=87.96  Aligned_cols=125  Identities=20%  Similarity=0.187  Sum_probs=89.0

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCCCCC----CC-cEEEecccc--
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFESVP----EA-DTILMKWVL--  261 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~~~~----~~-D~i~~~~vl--  261 (356)
                      +..+|||+|||+|.++..+++..|+.+++++|. +.+++.++++   .+++++.+|+++..+    .. |+|++.--.  
T Consensus        86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~  165 (251)
T TIGR03704        86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP  165 (251)
T ss_pred             CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence            346899999999999999999999999999996 8888877654   347889999876332    23 999875321  


Q ss_pred             ----cCCChH------------------HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC
Q 018405          262 ----SSFDDE------------------QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH  319 (356)
Q Consensus       262 ----h~~~~~------------------~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (356)
                          +..+++                  -...+++.+.+.|+|||++++.-.   .                        
T Consensus       166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~---~------------------------  218 (251)
T TIGR03704       166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS---E------------------------  218 (251)
T ss_pred             chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---c------------------------
Confidence                111111                  134888888999999999987321   0                        


Q ss_pred             CccCCHHHHHHHHHHcCCcceeEEEccC
Q 018405          320 GRERTKQEYSELAIKAGFKGVNYEYGAC  347 (356)
Q Consensus       320 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~  347 (356)
                         ...+++.+++++.||+..-...-..
T Consensus       219 ---~~~~~v~~~l~~~g~~~~~~~~~~~  243 (251)
T TIGR03704       219 ---RQAPLAVEAFARAGLIARVASSEEL  243 (251)
T ss_pred             ---chHHHHHHHHHHCCCCceeeEcccc
Confidence               0134677888889988765544433

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.95  E-value=6.4e-09  Score=78.00  Aligned_cols=92  Identities=26%  Similarity=0.321  Sum_probs=74.4

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC------CCCCceEEEccCCCCC---CCC-cEEEecccccCC
Q 018405          196 KLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP------SYLGIEHVGGDFFESV---PEA-DTILMKWVLSSF  264 (356)
Q Consensus       196 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~D~~~~~---~~~-D~i~~~~vlh~~  264 (356)
                      +|+|+|||.|..+..+++ .+..+++++|. +.....++      ...++++..+|+.+..   +.. |+|++..+++++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            589999999999999988 67789999996 55555443      1257889999988832   233 999999999984


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          265 DDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       265 ~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                       .+....+++.+.+.|+|||.+++.
T Consensus        80 -~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 -VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence             356899999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.93  E-value=7.3e-09  Score=83.46  Aligned_cols=122  Identities=20%  Similarity=0.150  Sum_probs=89.1

Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC-CCC-C-cEEEecccccC
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES-VPE-A-DTILMKWVLSS  263 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~-~~~-~-D~i~~~~vlh~  263 (356)
                      .||||+|||.|.++..|++.--....+++|. +..++.|+..       +.|+|.+.|+.+| +-. . |+|+=..++..
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA  148 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA  148 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence            3999999999999999998543345788885 6666665432       3499999999984 322 2 77754444332


Q ss_pred             C------ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCC
Q 018405          264 F------DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGF  337 (356)
Q Consensus       264 ~------~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf  337 (356)
                      +      ++......+..+.+.|+|||+++|..                          |    -.|.+|+.+.++.-||
T Consensus       149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS--------------------------C----N~T~dELv~~f~~~~f  198 (227)
T KOG1271|consen  149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS--------------------------C----NFTKDELVEEFENFNF  198 (227)
T ss_pred             eecCCCCcccceeeehhhHhhccCCCcEEEEEe--------------------------c----CccHHHHHHHHhcCCe
Confidence            2      22334567888999999999999821                          1    2578999999999999


Q ss_pred             cceeEEEcc
Q 018405          338 KGVNYEYGA  346 (356)
Q Consensus       338 ~~~~~~~~~  346 (356)
                      .....+|.+
T Consensus       199 ~~~~tvp~p  207 (227)
T KOG1271|consen  199 EYLSTVPTP  207 (227)
T ss_pred             EEEEeeccc
Confidence            998888876

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.92  E-value=2.8e-08  Score=85.38  Aligned_cols=101  Identities=13%  Similarity=0.047  Sum_probs=83.6

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------------------CCCceEEEccCCC-CCC
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------------------YLGIEHVGGDFFE-SVP  250 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~-~~~  250 (356)
                      ..+..|||+.|||.|.-+..|+.  -+.+++++|+ +..++.+.+                  ..+|++.++|+++ +.+
T Consensus        41 ~~~~~rvLvPgCGkg~D~~~LA~--~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~  118 (226)
T PRK13256         41 INDSSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI  118 (226)
T ss_pred             CCCCCeEEEeCCCChHHHHHHHh--CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence            34568999999999999999998  4667999997 666766421                  1478999999999 422


Q ss_pred             -----CCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          251 -----EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       251 -----~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                           ..|+|+=..+|++++.+...+..+.+.++|+|||.++++....
T Consensus       119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~  166 (226)
T PRK13256        119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH  166 (226)
T ss_pred             ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence                 1299999999999999999999999999999999999987543

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.92  E-value=1.3e-08  Score=93.67  Aligned_cols=130  Identities=15%  Similarity=0.006  Sum_probs=90.7

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCC-
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPE-  251 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~-  251 (356)
                      ...+++... +++..+|||+|||+|.++...+.  .+.+++++|. +.+++.++.+      +++.+..+|+.+ +.+. 
T Consensus       171 a~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~  247 (329)
T TIGR01177       171 ARAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSE  247 (329)
T ss_pred             HHHHHHHhC-CCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccC
Confidence            344444444 66788999999999999887655  4678999996 7777765432      347889999988 5543 


Q ss_pred             C-cEEEecccc-------cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccC
Q 018405          252 A-DTILMKWVL-------SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRER  323 (356)
Q Consensus       252 ~-D~i~~~~vl-------h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (356)
                      . |+|++.--.       .+...+-..++|+++++.|+|||+++++-+.                               
T Consensus       248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~-------------------------------  296 (329)
T TIGR01177       248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT-------------------------------  296 (329)
T ss_pred             CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC-------------------------------
Confidence            3 999985221       1111133579999999999999999885321                               


Q ss_pred             CHHHHHHHHHHcCCcceeEEEcc
Q 018405          324 TKQEYSELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       324 t~~e~~~ll~~aGf~~~~~~~~~  346 (356)
                       ..+|.++++++|| ++......
T Consensus       297 -~~~~~~~~~~~g~-i~~~~~~~  317 (329)
T TIGR01177       297 -RIDLESLAEDAFR-VVKRFEVR  317 (329)
T ss_pred             -CCCHHHHHhhcCc-chheeeee
Confidence             1245567888999 77666643

This family is found exclusively in the Archaea.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.91  E-value=1.1e-08  Score=88.26  Aligned_cols=99  Identities=15%  Similarity=0.208  Sum_probs=73.5

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCC---
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPE---  251 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~---  251 (356)
                      ..++..+. ..+..+|||||||+|..+..+++...  +++++|. +.+++.++++      .+++++.+|..+..+.   
T Consensus        68 ~~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  144 (212)
T PRK00312         68 ARMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP  144 (212)
T ss_pred             HHHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence            34455555 67789999999999999987777653  6888885 7777666542      4689999998774332   


Q ss_pred             CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      .|+|++...++++        .+.+.+.|+|||++++.-.
T Consensus       145 fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        145 FDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             cCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence            3999998776654        3457789999999998543

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.88  E-value=2.2e-09  Score=83.29  Aligned_cols=95  Identities=20%  Similarity=0.286  Sum_probs=74.2

Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-C--CCCC--cEEEecccc
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-S--VPEA--DTILMKWVL  261 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~--~~~~--D~i~~~~vl  261 (356)
                      .+|||+|||+|.++..+++.. ..+++++|+ |..++.++..       ++++++.+|+.+ .  .+..  |+|+++-..
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            589999999999999999998 788999996 7777666542       579999999987 3  4433  999997666


Q ss_pred             cCCC------hHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          262 SSFD------DEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       262 h~~~------~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +...      .+....+++++.+.|+|||.++++-
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            6432      1134689999999999999998864

...

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.88  E-value=7.1e-09  Score=87.42  Aligned_cols=98  Identities=18%  Similarity=0.253  Sum_probs=68.5

Q ss_pred             CCCceEEEEcCCccH--HHHH--HHHh----CC-CCeEEEccc-hHHHHhCCCC--------------------------
Q 018405          192 EHVKKLVDVGGGLGA--TLNM--IISK----YP-RIKGINYDL-PYVIKNAPSY--------------------------  235 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~--~~~~--l~~~----~p-~~~~~~~D~-~~~~~~a~~~--------------------------  235 (356)
                      .+..||+-.||++|.  ++.+  +.+.    .+ .+++++.|+ +.+++.|++-                          
T Consensus        30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~  109 (196)
T PF01739_consen   30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG  109 (196)
T ss_dssp             -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred             CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence            367899999999995  3333  3331    12 467899996 7788777531                          


Q ss_pred             --------CCceEEEccCCC-CCCC-C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          236 --------LGIEHVGGDFFE-SVPE-A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       236 --------~~v~~~~~D~~~-~~~~-~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                              .+|.|..+|+.+ +.+. . |+|+|.+||-+++++...++++++++.|+|||.|++-
T Consensus       110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                    468999999998 3333 3 9999999999999999999999999999999999995

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.88  E-value=9.7e-09  Score=86.53  Aligned_cols=98  Identities=21%  Similarity=0.297  Sum_probs=74.1

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----------C----------------------
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----------L----------------------  236 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~----------------------  236 (356)
                      +..+..+|||||.+|.++..+++.|....++++|+ +..++.|++.           .                      
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~  135 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR  135 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence            55778999999999999999999999889999997 7778877653           0                      


Q ss_pred             --------Cce-------EEEccCCC-CCCCCcEEEecc----cccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          237 --------GIE-------HVGGDFFE-SVPEADTILMKW----VLSSFDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       237 --------~v~-------~~~~D~~~-~~~~~D~i~~~~----vlh~~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                              ++.       +..-|+.+ ..++.|+|+|-.    +=-+|.|+-...+|+++++.|.|||+|++
T Consensus       136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv  207 (288)
T KOG2899|consen  136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV  207 (288)
T ss_pred             cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence                    111       11122332 234458987743    33357889999999999999999999888

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.88  E-value=2.3e-08  Score=85.98  Aligned_cols=141  Identities=19%  Similarity=0.201  Sum_probs=88.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCCCC-CcEEEecccccCCChHHHHH
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPE-ADTILMKWVLSSFDDEQSLK  271 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~-~D~i~~~~vlh~~~~~~~~~  271 (356)
                      +..++||||+|.|..+..++..+.++.++-.. +.|....+++ +++++..|-....+. .|+|.|.|+|...  +++..
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-~~Mr~rL~~k-g~~vl~~~~w~~~~~~fDvIscLNvLDRc--~~P~~  169 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEAS-PPMRWRLSKK-GFTVLDIDDWQQTDFKFDVISCLNVLDRC--DRPLT  169 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCC-HHHHHHHHhC-CCeEEehhhhhccCCceEEEeehhhhhcc--CCHHH
Confidence            45789999999999999999988874443333 5555554433 455444332222222 3999999999877  44799


Q ss_pred             HHHHHHHhCCCCCEEEEEecc-----cCCCC--CCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405          272 LLKNCYKALPDGGKLLNVNVT-----IPEVP--ENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       272 ~L~~~~~~L~pgG~lii~e~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  344 (356)
                      +|+.++++|+|+|++++.=..     .+...  ...+..    ..+     ..+...+-....+.+.|+.+||++.+...
T Consensus       170 LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e----~l~-----~~g~~~E~~v~~l~~v~~p~GF~v~~~tr  240 (265)
T PF05219_consen  170 LLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE----LLP-----VKGATFEEQVSSLVNVFEPAGFEVERWTR  240 (265)
T ss_pred             HHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh----hcC-----CCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence            999999999999999884321     11111  001111    111     01011111223345899999999999877


Q ss_pred             cc
Q 018405          345 GA  346 (356)
Q Consensus       345 ~~  346 (356)
                      .+
T Consensus       241 ~P  242 (265)
T PF05219_consen  241 LP  242 (265)
T ss_pred             cC
Confidence            65

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.87  E-value=1.4e-08  Score=88.30  Aligned_cols=155  Identities=19%  Similarity=0.265  Sum_probs=89.0

Q ss_pred             HHHHHHHHHhcCCCCCceEEEEcCCcc--HHHHHHHH-hCCCCeEEEccc-hHHHHhCCCC----CC--ceEEEccCCCC
Q 018405          179 VVMEKVLESYKGFEHVKKLVDVGGGLG--ATLNMIIS-KYPRIKGINYDL-PYVIKNAPSY----LG--IEHVGGDFFES  248 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G--~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~----~~--v~~~~~D~~~~  248 (356)
                      .+....++.+..-.+...+||||||--  ...-++++ ..|+.+++.+|. |-++..++..    ++  ..++.+|+.++
T Consensus        54 ~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p  133 (267)
T PF04672_consen   54 AFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP  133 (267)
T ss_dssp             HHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred             HHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence            334445555442237789999999933  34445544 579999999996 8778777542    44  88999999874


Q ss_pred             -----CCC---------CcEEEecccccCCCh-HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhh
Q 018405          249 -----VPE---------ADTILMKWVLSSFDD-EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTIC  313 (356)
Q Consensus       249 -----~~~---------~D~i~~~~vlh~~~~-~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~  313 (356)
                           .|+         -=.+++..+||+++| ++...+++.++++|.||+.|+|.....+..+  ..   .......+.
T Consensus       134 ~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p--~~---~~~~~~~~~  208 (267)
T PF04672_consen  134 EAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP--ER---AEALEAVYA  208 (267)
T ss_dssp             HHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH--HH---HHHHHHHHH
T ss_pred             HHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH--HH---HHHHHHHHH
Confidence                 111         147889999999987 6899999999999999999999888764321  11   111222222


Q ss_pred             hhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405          314 LFQVPHGRERTKQEYSELAIKAGFKGVN  341 (356)
Q Consensus       314 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~  341 (356)
                      .. ......||.+|+.++|.  ||+.++
T Consensus       209 ~~-~~~~~~Rs~~ei~~~f~--g~elve  233 (267)
T PF04672_consen  209 QA-GSPGRPRSREEIAAFFD--GLELVE  233 (267)
T ss_dssp             HC-CS----B-HHHHHHCCT--TSEE-T
T ss_pred             cC-CCCceecCHHHHHHHcC--CCccCC
Confidence            21 12467899999999998  887664

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.87  E-value=1.3e-07  Score=84.24  Aligned_cols=97  Identities=16%  Similarity=0.166  Sum_probs=75.5

Q ss_pred             CCceEEEEcCCccH--HH--HHHHHhCC----CCeEEEccc-hHHHHhCCCC----------------------------
Q 018405          193 HVKKLVDVGGGLGA--TL--NMIISKYP----RIKGINYDL-PYVIKNAPSY----------------------------  235 (356)
Q Consensus       193 ~~~~vLDiG~G~G~--~~--~~l~~~~p----~~~~~~~D~-~~~~~~a~~~----------------------------  235 (356)
                      +..||.-.||+||.  ++  +.+.+..+    ++++++.|+ +.+++.|+.-                            
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            45899999999995  33  33334332    467899996 7777666421                            


Q ss_pred             ---------CCceEEEccCCC-CCC--CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          236 ---------LGIEHVGGDFFE-SVP--EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       236 ---------~~v~~~~~D~~~-~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                               .+|.|..+|+.+ ++|  .. |+|+|.++|.|++++...+++++++++|+|||+|++-
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                     347888999988 444  33 9999999999999999999999999999999998884

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=2.6e-08  Score=83.46  Aligned_cols=101  Identities=16%  Similarity=0.242  Sum_probs=81.2

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCC-
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPE-  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~-  251 (356)
                      ....+++.+. +++..+|||||||+|+.+.-+++...  +++.+++ +...+.|+++      .+|.++.+|-..-+|+ 
T Consensus        60 ~vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~  136 (209)
T COG2518          60 MVARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE  136 (209)
T ss_pred             HHHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence            3456777777 88999999999999999998888655  7888885 7777777653      5799999999985554 


Q ss_pred             C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      +  |.|+.....-..|+        .+.+-|+|||++++...
T Consensus       137 aPyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         137 APYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence            4  99999888777765        46667899999999765

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.84  E-value=4.3e-08  Score=84.33  Aligned_cols=139  Identities=24%  Similarity=0.269  Sum_probs=100.6

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC---C---------------CCCceEEE
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP---S---------------YLGIEHVG  242 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---------------~~~v~~~~  242 (356)
                      ..+++.+. ..+..+||..|||.|.-+..|+++  +.+++++|+ +..++.+.   .               ..+|++.+
T Consensus        27 ~~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~  103 (218)
T PF05724_consen   27 VEYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC  103 (218)
T ss_dssp             HHHHHHHT-TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred             HHHHHhcC-CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence            33444444 567789999999999999999985  678999997 77777651   1               14688999


Q ss_pred             ccCCC-CCCC---CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC
Q 018405          243 GDFFE-SVPE---ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP  318 (356)
Q Consensus       243 ~D~~~-~~~~---~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (356)
                      +|+++ +...   .|+|+=...|+.++.+...+..+.+.++|+|||.++++....+....                    
T Consensus       104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~--------------------  163 (218)
T PF05724_consen  104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM--------------------  163 (218)
T ss_dssp             S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS--------------------
T ss_pred             cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC--------------------
Confidence            99999 3222   29999999999999999999999999999999996555444332110                    


Q ss_pred             CCc--cCCHHHHHHHHHHcCCcceeEEE
Q 018405          319 HGR--ERTKQEYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       319 ~~~--~~t~~e~~~ll~~aGf~~~~~~~  344 (356)
                      .|.  ..+.+++.+++. .+|++..+..
T Consensus       164 ~GPPf~v~~~ev~~l~~-~~f~i~~l~~  190 (218)
T PF05724_consen  164 EGPPFSVTEEEVRELFG-PGFEIEELEE  190 (218)
T ss_dssp             SSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred             CCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence            111  136889999998 8888776654

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=4.2e-08  Score=87.01  Aligned_cols=139  Identities=24%  Similarity=0.283  Sum_probs=92.0

Q ss_pred             HHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCce----E
Q 018405          169 FNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIE----H  240 (356)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~----~  240 (356)
                      |..+.+..+...+ .+++.+.  .++.+|||+|||+|.+++..++-. -.+++++|+ |..++.++.+   +++.    .
T Consensus       141 FGTG~HpTT~lcL-~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~  216 (300)
T COG2264         141 FGTGTHPTTSLCL-EALEKLL--KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQA  216 (300)
T ss_pred             cCCCCChhHHHHH-HHHHHhh--cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhc
Confidence            4344443444444 3344443  478999999999999999887743 346888886 7777777653   4444    2


Q ss_pred             EEccCCC-CCC-CCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC
Q 018405          241 VGGDFFE-SVP-EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP  318 (356)
Q Consensus       241 ~~~D~~~-~~~-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (356)
                      ...+..+ +.. ..|+|+++= |-    +-...+...+++.++|||++++.....                         
T Consensus       217 ~~~~~~~~~~~~~~DvIVANI-LA----~vl~~La~~~~~~lkpgg~lIlSGIl~-------------------------  266 (300)
T COG2264         217 KGFLLLEVPENGPFDVIVANI-LA----EVLVELAPDIKRLLKPGGRLILSGILE-------------------------  266 (300)
T ss_pred             ccccchhhcccCcccEEEehh-hH----HHHHHHHHHHHHHcCCCceEEEEeehH-------------------------
Confidence            2223222 222 239988754 43    236799999999999999999844221                         


Q ss_pred             CCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405          319 HGRERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       319 ~~~~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                          ...+...+.+.++||.++++..-
T Consensus       267 ----~q~~~V~~a~~~~gf~v~~~~~~  289 (300)
T COG2264         267 ----DQAESVAEAYEQAGFEVVEVLER  289 (300)
T ss_pred             ----hHHHHHHHHHHhCCCeEeEEEec
Confidence                12567788889999999887665

>PRK00811 spermidine synthase; Provisional

Probab=98.83  E-value=1.3e-08  Score=91.45  Aligned_cols=98  Identities=22%  Similarity=0.287  Sum_probs=73.8

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-----------CCCceEEEccCCC--CCCC-C-cEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-----------YLGIEHVGGDFFE--SVPE-A-DTI  255 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~--~~~~-~-D~i  255 (356)
                      +++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++           .+|++++.+|...  ..+. . |+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            3578999999999999999997655568999996 888777754           2579999999876  2222 2 999


Q ss_pred             EecccccCCChHH--HHHHHHHHHHhCCCCCEEEEE
Q 018405          256 LMKWVLSSFDDEQ--SLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       256 ~~~~vlh~~~~~~--~~~~L~~~~~~L~pgG~lii~  289 (356)
                      ++-..-+..+...  ...+++.+++.|+|||.+++.
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9865433322221  367899999999999998874

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=98.81  E-value=1.1e-08  Score=65.66  Aligned_cols=51  Identities=51%  Similarity=0.830  Sum_probs=42.4

Q ss_pred             HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHh
Q 018405           28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLV   82 (356)
Q Consensus        28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~   82 (356)
                      ++|++|++|||||.|.+.| +++.|++||+.++...  ||..+. .+.|+||+|+
T Consensus         1 MaLk~aveLgI~dii~~~g-~~~ls~~eia~~l~~~--~p~~~~-~L~RimR~L~   51 (51)
T PF08100_consen    1 MALKCAVELGIPDIIHNAG-GGPLSLSEIAARLPTS--NPSAPP-MLDRIMRLLV   51 (51)
T ss_dssp             HHHHHHHHTTHHHHHHHHT-TS-BEHHHHHHTSTCT---TTHHH-HHHHHHHHHH
T ss_pred             CcHHHHHHcCcHHHHHHcC-CCCCCHHHHHHHcCCC--CcchHH-HHHHHHHHhC
Confidence            4799999999999999875 3699999999999932  566677 9999999985

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.80  E-value=1.5e-07  Score=84.23  Aligned_cols=122  Identities=21%  Similarity=0.266  Sum_probs=87.2

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCCC-cEEEeccc--cc---
Q 018405          196 KLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPEA-DTILMKWV--LS---  262 (356)
Q Consensus       196 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~~-D~i~~~~v--lh---  262 (356)
                      +|||+|||+|..+..++.+.|+++++++|+ +..++.|+.+      .++.++.+|.+++.+.. |+|+++--  -.   
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~  192 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP  192 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence            899999999999999999999999999996 8888777643      34566777988865544 88887311  00   


Q ss_pred             CC-C-----------------hHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCC
Q 018405          263 SF-D-----------------DEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERT  324 (356)
Q Consensus       263 ~~-~-----------------~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  324 (356)
                      +. +                 -+-...+++.+.+.|+|||.+++ |...                             -.
T Consensus       193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~-----------------------------~q  242 (280)
T COG2890         193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGL-----------------------------TQ  242 (280)
T ss_pred             ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECC-----------------------------Cc
Confidence            01 0                 02356788888889999777776 2110                             12


Q ss_pred             HHHHHHHHHHcC-CcceeEEEccC
Q 018405          325 KQEYSELAIKAG-FKGVNYEYGAC  347 (356)
Q Consensus       325 ~~e~~~ll~~aG-f~~~~~~~~~~  347 (356)
                      .+...+++.+.| |..+...+...
T Consensus       243 ~~~v~~~~~~~~~~~~v~~~~d~~  266 (280)
T COG2890         243 GEAVKALFEDTGFFEIVETLKDLF  266 (280)
T ss_pred             HHHHHHHHHhcCCceEEEEEecCC
Confidence            567889999999 66666666543

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.79  E-value=3.9e-07  Score=80.26  Aligned_cols=97  Identities=20%  Similarity=0.262  Sum_probs=79.9

Q ss_pred             CCceEEEEcCCccH----HHHHHHHhCC-----CCeEEEccc-hHHHHhCCCC---------------------------
Q 018405          193 HVKKLVDVGGGLGA----TLNMIISKYP-----RIKGINYDL-PYVIKNAPSY---------------------------  235 (356)
Q Consensus       193 ~~~~vLDiG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~---------------------------  235 (356)
                      +..||.-+||+||.    ++..+.+.+|     .+++++.|+ ..+++.|+.-                           
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            57899999999995    5555666675     477888896 7788777531                           


Q ss_pred             --------CCceEEEccCCC-C-CCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          236 --------LGIEHVGGDFFE-S-VPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       236 --------~~v~~~~~D~~~-~-~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                              ..|.|..+|+.+ + .+.. |+|+|.+||-+++.+...+++++.+..|+|||.|++-
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                    248899999998 4 3444 9999999999999999999999999999999999994

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.77  E-value=3.7e-08  Score=89.51  Aligned_cols=100  Identities=16%  Similarity=0.257  Sum_probs=74.1

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCC------CCCceEEEccCCCCCC--C
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPS------YLGIEHVGGDFFESVP--E  251 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~~--~  251 (356)
                      ..+++.++ .++..+|||||||+|..+..+++..+. ..++++|. +.+++.+++      .+++.++.+|..+..+  .
T Consensus        70 a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~  148 (322)
T PRK13943         70 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA  148 (322)
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence            44555555 667789999999999999999988764 46888996 777766653      2578899999876322  2


Q ss_pred             -CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          252 -ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       252 -~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                       .|+|++...+++.+        ..+.+.|+|||++++..
T Consensus       149 ~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        149 PYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             CccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence             39999986665443        24667899999988853

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.76  E-value=2.1e-08  Score=83.83  Aligned_cols=146  Identities=17%  Similarity=0.186  Sum_probs=99.8

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCce-EEEc---cCCC--CCCCCc
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIE-HVGG---DFFE--SVPEAD  253 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~-~~~~---D~~~--~~~~~D  253 (356)
                      .++++...+ ..+..++||+|||||-....|.....  +.+++|+ ..|++.|..++-.+ ..+.   +|..  .....|
T Consensus       114 l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D  190 (287)
T COG4976         114 LAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD  190 (287)
T ss_pred             HHHHHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence            445555555 55689999999999999988877554  3677896 78899887653221 1111   2333  222349


Q ss_pred             EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCc-cCCHHHHHHHH
Q 018405          254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGR-ERTKQEYSELA  332 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~e~~~ll  332 (356)
                      +|+...||-++.+  ...++--+...|+|||.+.+.--..+....        ..     +  .+..+ ..++.-...++
T Consensus       191 Li~AaDVl~YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~--------f~-----l--~ps~RyAH~~~YVr~~l  253 (287)
T COG4976         191 LIVAADVLPYLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDDGG--------FV-----L--GPSQRYAHSESYVRALL  253 (287)
T ss_pred             chhhhhHHHhhcc--hhhHHHHHHHhcCCCceEEEEecccCCCCC--------ee-----c--chhhhhccchHHHHHHH
Confidence            9999999999965  889999999999999999886433333210        00     0  11111 12566778999


Q ss_pred             HHcCCcceeEEEcc
Q 018405          333 IKAGFKGVNYEYGA  346 (356)
Q Consensus       333 ~~aGf~~~~~~~~~  346 (356)
                      +..||+++.+.++.
T Consensus       254 ~~~Gl~~i~~~~tt  267 (287)
T COG4976         254 AASGLEVIAIEDTT  267 (287)
T ss_pred             HhcCceEEEeeccc
Confidence            99999999987763

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.74  E-value=1.5e-08  Score=86.47  Aligned_cols=102  Identities=21%  Similarity=0.320  Sum_probs=75.1

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPE  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~  251 (356)
                      ....+++.+. +++..+|||||||+|+.+.-++.... .-+++.+|. +...+.|+++      .+|.++.+|.....++
T Consensus        60 ~~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~  138 (209)
T PF01135_consen   60 MVARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE  138 (209)
T ss_dssp             HHHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred             HHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence            4567777787 88999999999999999999888653 446888885 8888877653      5799999998875443


Q ss_pred             -C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          252 -A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       252 -~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                       +  |.|++.......|.        .+.+.|++||++++.-
T Consensus       139 ~apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi  172 (209)
T PF01135_consen  139 EAPFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPI  172 (209)
T ss_dssp             G-SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEE
T ss_pred             CCCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEE
Confidence             3  99999888876654        3666789999999943

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK01581 speE spermidine synthase; Validated

Probab=98.72  E-value=8.8e-08  Score=87.20  Aligned_cols=98  Identities=18%  Similarity=0.156  Sum_probs=73.1

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-------------CCCceEEEccCCC--CC-CCC-c
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-------------YLGIEHVGGDFFE--SV-PEA-D  253 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~--~~-~~~-D  253 (356)
                      .++.+||+||||+|..+..+++..+..+++.+|+ +.+++.|+.             .+|++++.+|..+  .. ++. |
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            4678999999999999999987655568999996 888887763             2689999999876  22 222 9


Q ss_pred             EEEeccccc---CCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          254 TILMKWVLS---SFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       254 ~i~~~~vlh---~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      +|++-..-.   ....--...+++.|++.|+|||.+++.
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            999863210   011112367999999999999998885

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.72  E-value=6.6e-08  Score=81.73  Aligned_cols=95  Identities=23%  Similarity=0.254  Sum_probs=69.0

Q ss_pred             CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEE-------ccCCC-C-CCCC-cEEEeccccc
Q 018405          194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVG-------GDFFE-S-VPEA-DTILMKWVLS  262 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-------~D~~~-~-~~~~-D~i~~~~vlh  262 (356)
                      ...++|||||+|..++.++..+.  ++++.|. +.+++.+++.+++.+..       -++.+ . .++. |+|++...+|
T Consensus        34 h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H  111 (261)
T KOG3010|consen   34 HRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH  111 (261)
T ss_pred             cceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence            34899999999988887777655  4888995 99999998876554432       22222 1 1233 9999999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      .++   ...+.+.++++|||.|.++.+-...
T Consensus       112 WFd---le~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  112 WFD---LERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             hhc---hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence            774   5899999999999877444444333

>PLN02366 spermidine synthase

Probab=98.72  E-value=1.1e-07  Score=86.10  Aligned_cols=97  Identities=23%  Similarity=0.248  Sum_probs=71.6

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC----------CCceEEEccCCC---CCCC--CcE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFE---SVPE--ADT  254 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~~--~D~  254 (356)
                      +++.+||+||||.|..+..+++. |. .+++.+|+ +.+++.+++.          +|++++.+|...   ..++  .|+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            46789999999999999999865 54 57888886 7677766542          589999999754   2322  399


Q ss_pred             EEecccccCCChH--HHHHHHHHHHHhCCCCCEEEEE
Q 018405          255 ILMKWVLSSFDDE--QSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       255 i~~~~vlh~~~~~--~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      |++-..-++.+..  -...+++.+++.|+|||.+++.
T Consensus       169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            9985443322211  1357899999999999998774

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.72  E-value=7.1e-08  Score=86.34  Aligned_cols=144  Identities=23%  Similarity=0.241  Sum_probs=90.5

Q ss_pred             HHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceE
Q 018405          169 FNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEH  240 (356)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~  240 (356)
                      |..+.+..++..+..+ ..+.  .+..+|||||||||.+++..++... .+++++|. |..++.++.+       +++.+
T Consensus       140 FGTG~H~TT~lcl~~l-~~~~--~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v  215 (295)
T PF06325_consen  140 FGTGHHPTTRLCLELL-EKYV--KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEV  215 (295)
T ss_dssp             S-SSHCHHHHHHHHHH-HHHS--STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred             ccCCCCHHHHHHHHHH-HHhc--cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence            4444555555555443 3343  4567999999999999998777533 47889996 7777777653       33333


Q ss_pred             EEccCCCCCC--CCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC
Q 018405          241 VGGDFFESVP--EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP  318 (356)
Q Consensus       241 ~~~D~~~~~~--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (356)
                        .. ..+.+  ..|+|+++-..     +-...+...+.+.|+|||++++......                        
T Consensus       216 --~~-~~~~~~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~~------------------------  263 (295)
T PF06325_consen  216 --SL-SEDLVEGKFDLVVANILA-----DVLLELAPDIASLLKPGGYLILSGILEE------------------------  263 (295)
T ss_dssp             --SC-TSCTCCS-EEEEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEEEGG------------------------
T ss_pred             --EE-ecccccccCCEEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEccccHH------------------------
Confidence              21 12222  23998865332     3467889999999999999999443321                        


Q ss_pred             CCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEe
Q 018405          319 HGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFL  355 (356)
Q Consensus       319 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~  355 (356)
                           ..+++.+.+++ ||+..+.... +....+.++
T Consensus       264 -----~~~~v~~a~~~-g~~~~~~~~~-~~W~~l~~~  293 (295)
T PF06325_consen  264 -----QEDEVIEAYKQ-GFELVEEREE-GEWVALVFK  293 (295)
T ss_dssp             -----GHHHHHHHHHT-TEEEEEEEEE-TTEEEEEEE
T ss_pred             -----HHHHHHHHHHC-CCEEEEEEEE-CCEEEEEEE
Confidence                 24577788876 9998877665 333344333

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=1.1e-07  Score=81.54  Aligned_cols=106  Identities=19%  Similarity=0.253  Sum_probs=87.2

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHH-hCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIIS-KYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP  250 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~  250 (356)
                      +..|+..+. .++..+|+|.|.|+|.++..|+. ..|.-+++.+|. ++..+.|+++       +++++..+|+.+ ..+
T Consensus        83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~  161 (256)
T COG2519          83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE  161 (256)
T ss_pred             HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence            446666666 88999999999999999999996 557789999995 8888887654       569999999988 334


Q ss_pred             CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          251 EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       251 ~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                      +. |+|++     ++++  +-++|.+++++|+|||.+++.-++.+
T Consensus       162 ~~vDav~L-----Dmp~--PW~~le~~~~~Lkpgg~~~~y~P~ve  199 (256)
T COG2519         162 EDVDAVFL-----DLPD--PWNVLEHVSDALKPGGVVVVYSPTVE  199 (256)
T ss_pred             cccCEEEE-----cCCC--hHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence            44 98887     6755  68999999999999999999877664

>TIGR00417 speE spermidine synthase

Probab=98.67  E-value=7.2e-08  Score=86.21  Aligned_cols=98  Identities=19%  Similarity=0.239  Sum_probs=72.7

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCC--C-CCCC-cEEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFE--S-VPEA-DTIL  256 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~--~-~~~~-D~i~  256 (356)
                      +++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++.          ++++++.+|..+  . .++. |+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            3456999999999999999988766667888886 7776666542          578888888765  1 1233 9999


Q ss_pred             ecccccCCChHH--HHHHHHHHHHhCCCCCEEEEE
Q 018405          257 MKWVLSSFDDEQ--SLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       257 ~~~vlh~~~~~~--~~~~L~~~~~~L~pgG~lii~  289 (356)
                      +...-..-+...  ...+++.+++.|+|||.+++.
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            865533222222  468899999999999999985

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.65  E-value=3e-07  Score=80.29  Aligned_cols=98  Identities=15%  Similarity=0.143  Sum_probs=74.8

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC------C--C-CC
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES------V--P-EA  252 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~------~--~-~~  252 (356)
                      ..+..+|||||||+|..+..++...+ +.+++.+|. +..++.|+++       ++++++.+|..+.      .  . ..
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            44688999999999999999998765 678999996 7777766543       5799999998762      1  1 23


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      |+|++-     ...+.....+..+.+.|+|||.+++-+...
T Consensus       146 D~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn~l~  181 (234)
T PLN02781        146 DFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDNTLW  181 (234)
T ss_pred             CEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence            999873     223456788999999999999877755443

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.64  E-value=1.1e-07  Score=78.90  Aligned_cols=102  Identities=13%  Similarity=0.225  Sum_probs=68.9

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC--c
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA--D  253 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~--D  253 (356)
                      ..+++.+. ..+..+|||||||+|.++..++++  ..+++++|. +.+++.++++    ++++++.+|+.+ +.+..  |
T Consensus         3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d   79 (169)
T smart00650        3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY   79 (169)
T ss_pred             HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence            45566665 667789999999999999999987  457888885 6666665432    579999999988 55543  8


Q ss_pred             EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      .|+++ .-++.+.+...++++...  +.++|.+++.
T Consensus        80 ~vi~n-~Py~~~~~~i~~~l~~~~--~~~~~~l~~q  112 (169)
T smart00650       80 KVVGN-LPYNISTPILFKLLEEPP--AFRDAVLMVQ  112 (169)
T ss_pred             EEEEC-CCcccHHHHHHHHHhcCC--CcceEEEEEE
Confidence            77665 444454333444443211  3356666553

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.63  E-value=2.7e-07  Score=87.92  Aligned_cols=111  Identities=18%  Similarity=0.248  Sum_probs=79.4

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCC---CC-C
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFES---VP-E  251 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~---~~-~  251 (356)
                      ..++..++ ..+..+|||+|||+|..+..+++..++.+++++|. +.+++.++++     .+++++.+|..+.   .+ .
T Consensus       234 ~~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~  312 (427)
T PRK10901        234 QLAATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQ  312 (427)
T ss_pred             HHHHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccC
Confidence            34444454 56778999999999999999999988789999996 7777766543     2467889998762   22 2


Q ss_pred             -CcEEEe----cc--cccC-------CChHH-------HHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          252 -ADTILM----KW--VLSS-------FDDEQ-------SLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       252 -~D~i~~----~~--vlh~-------~~~~~-------~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                       .|.|++    +.  ++.+       ...++       ..++|+++.+.|+|||++++.....
T Consensus       313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  375 (427)
T PRK10901        313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI  375 (427)
T ss_pred             CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence             399984    22  1111       12121       2479999999999999999877544

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.61  E-value=2.1e-07  Score=88.76  Aligned_cols=112  Identities=20%  Similarity=0.237  Sum_probs=80.1

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------C-CceEEEccCCC-CC--C
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------L-GIEHVGGDFFE-SV--P  250 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~-~~--~  250 (356)
                      ..++..++ ..+..+|||+|||+|..+..+++..+..+++++|. +..++.++++      . ++.+..+|... +.  +
T Consensus       228 ~~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~  306 (426)
T TIGR00563       228 QWVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE  306 (426)
T ss_pred             HHHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence            34444455 66778999999999999999999888788999996 7777666432      1 23335667654 22  2


Q ss_pred             -C-CcEEEe------cccccCCCh-------HH-------HHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          251 -E-ADTILM------KWVLSSFDD-------EQ-------SLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       251 -~-~D~i~~------~~vlh~~~~-------~~-------~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                       . .|.|++      ..++++.|+       ++       ..++|+++.+.|+|||+++..+....
T Consensus       307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL  372 (426)
T ss_pred             ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence             2 399985      345665443       11       36899999999999999999877664

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.59  E-value=1.9e-07  Score=85.26  Aligned_cols=98  Identities=20%  Similarity=0.267  Sum_probs=70.9

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------------C----CceEEEccCCCC------C
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------------L----GIEHVGGDFFES------V  249 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~----~v~~~~~D~~~~------~  249 (356)
                      +..+|||+|||-|+=+........ ..++++|+ +..+++|+.+            .    ...++.+|.+..      .
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            678999999999987777766432 36899997 6667766542            1    245678887752      2


Q ss_pred             CC--C-cEEEecccccCC--ChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          250 PE--A-DTILMKWVLSSF--DDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       250 ~~--~-D~i~~~~vlh~~--~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      +.  . |+|.|.+.||+.  +.+.+..+|+++.+.|+|||.+|..-+
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~  187 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP  187 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            22  2 999999999994  566788899999999999999998543

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.55  E-value=5.3e-07  Score=86.45  Aligned_cols=104  Identities=24%  Similarity=0.271  Sum_probs=75.5

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC-C-CcEEEec--
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP-E-ADTILMK--  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~-~D~i~~~--  258 (356)
                      ..+..+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++      .+|+++.+|..+..+ . .|+|++-  
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P  327 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP  327 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence            45678999999999999998888654 458999996 7777666543      468899999877323 2 3999851  


Q ss_pred             ----ccc-------cCCChHH-------HHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          259 ----WVL-------SSFDDEQ-------SLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       259 ----~vl-------h~~~~~~-------~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                          .++       .+++.++       ..++|+++.+.|+|||+++.......
T Consensus       328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence                111       1223222       24689999999999999999876554

>PLN02672 methionine S-methyltransferase

Probab=98.55  E-value=7.5e-07  Score=92.06  Aligned_cols=122  Identities=20%  Similarity=0.163  Sum_probs=85.0

Q ss_pred             CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------------------CCceEEEccCCCCCC
Q 018405          194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------------------LGIEHVGGDFFESVP  250 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------~~v~~~~~D~~~~~~  250 (356)
                      ..+|||+|||+|..+..+++.+|..+++++|+ +.+++.|+.+                      +|++++.+|+++..+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            46899999999999999999999999999996 7777666321                      369999999988543


Q ss_pred             C----CcEEEeccc--------------c--------cCC-------C---hH----HHHHHHHHHHHhCCCCCEEEEEe
Q 018405          251 E----ADTILMKWV--------------L--------SSF-------D---DE----QSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       251 ~----~D~i~~~~v--------------l--------h~~-------~---~~----~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      .    .|+|+++--              .        |.+       .   ++    -..+++..+.+.|+|||++++ |
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-E  277 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-N  277 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-E
Confidence            2    388886421              1        100       0   01    125677788888999987775 3


Q ss_pred             cccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHH-HHHHHcCCcceeEEEc
Q 018405          291 VTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYS-ELAIKAGFKGVNYEYG  345 (356)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~-~ll~~aGf~~~~~~~~  345 (356)
                      .-.                             ...+.+. +++++.||+.++++..
T Consensus       278 iG~-----------------------------~q~~~v~~~l~~~~gf~~~~~~~~  304 (1082)
T PLN02672        278 MGG-----------------------------RPGQAVCERLFERRGFRITKLWQT  304 (1082)
T ss_pred             ECc-----------------------------cHHHHHHHHHHHHCCCCeeEEeee
Confidence            211                             1234566 5888888888776654

>PRK03612 spermidine synthase; Provisional

Probab=98.55  E-value=3e-07  Score=89.59  Aligned_cols=97  Identities=23%  Similarity=0.315  Sum_probs=73.5

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC-------------CCceEEEccCCC---CCCCC-
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY-------------LGIEHVGGDFFE---SVPEA-  252 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~---~~~~~-  252 (356)
                      +++.+|||||||+|..+..+++ +|. .+++.+|+ +++++.++++             +|++++.+|..+   ..++. 
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            4678999999999999999987 455 68999996 8888887651             589999999876   12333 


Q ss_pred             cEEEecccccCCChH---HHHHHHHHHHHhCCCCCEEEEE
Q 018405          253 DTILMKWVLSSFDDE---QSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       253 D~i~~~~vlh~~~~~---~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      |+|++...-...+..   -..++++++++.|+|||.+++.
T Consensus       375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~  414 (521)
T PRK03612        375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ  414 (521)
T ss_pred             CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence            999986443221111   1246899999999999998884

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.54  E-value=4.8e-07  Score=86.75  Aligned_cols=109  Identities=22%  Similarity=0.202  Sum_probs=77.4

Q ss_pred             HHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC---CCC-
Q 018405          184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES---VPE-  251 (356)
Q Consensus       184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~~~-  251 (356)
                      +...+. ..+..+|||+|||+|..+..+++.. +..+++++|. +..++.++++      .+++++.+|+.+.   .+. 
T Consensus       242 v~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~  320 (444)
T PRK14902        242 VAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEK  320 (444)
T ss_pred             HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhccc
Confidence            333444 5667899999999999999999876 6779999996 7776665432      4588999998762   333 


Q ss_pred             CcEEEecc------cccCCC-------hHH-------HHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          252 ADTILMKW------VLSSFD-------DEQ-------SLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       252 ~D~i~~~~------vlh~~~-------~~~-------~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      .|+|++.-      ++.+.|       .++       ...+|+.+.+.|+|||+++......
T Consensus       321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            39998732      121111       112       2468999999999999998765443

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.53  E-value=1.1e-06  Score=73.82  Aligned_cols=120  Identities=25%  Similarity=0.280  Sum_probs=90.2

Q ss_pred             CceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCC-CCCC---C--cEEEecccccCCChH
Q 018405          194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFE-SVPE---A--DTILMKWVLSSFDDE  267 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~---~--D~i~~~~vlh~~~~~  267 (356)
                      ..++|||||=+....+.-   ++-..++.+|+..        ..-.+.+.||++ |.|.   .  |+|+++.||.+.|++
T Consensus        52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns--------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p  120 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNS--------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP  120 (219)
T ss_pred             cceEEeecccCCCCcccc---cCceeeEEeecCC--------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence            379999999766544432   3555688888632        123467889999 7763   1  999999999999966


Q ss_pred             -HHHHHHHHHHHhCCCCCE-----EEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405          268 -QSLKLLKNCYKALPDGGK-----LLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVN  341 (356)
Q Consensus       268 -~~~~~L~~~~~~L~pgG~-----lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~  341 (356)
                       +.-++|+++++.|+|+|.     |+|+-+..                   .   ..|.+..+.+.|.++++.-||..++
T Consensus       121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~-------------------C---v~NSRy~~~~~l~~im~~LGf~~~~  178 (219)
T PF11968_consen  121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP-------------------C---VTNSRYMTEERLREIMESLGFTRVK  178 (219)
T ss_pred             HHHHHHHHHHHHHhCCCCccCcceEEEEeCch-------------------H---hhcccccCHHHHHHHHHhCCcEEEE
Confidence             455999999999999999     77753321                   0   1266777899999999999999998


Q ss_pred             EEEcc
Q 018405          342 YEYGA  346 (356)
Q Consensus       342 ~~~~~  346 (356)
                      .....
T Consensus       179 ~~~~~  183 (219)
T PF11968_consen  179 YKKSK  183 (219)
T ss_pred             EEecC
Confidence            76653

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.52  E-value=6.7e-07  Score=85.45  Aligned_cols=109  Identities=19%  Similarity=0.143  Sum_probs=79.4

Q ss_pred             HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C----CC
Q 018405          184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S----VP  250 (356)
Q Consensus       184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~----~~  250 (356)
                      +...+. ..+..+|||+|||+|..+..+++... ..+++++|. +..++.++++      .+|+++.+|... +    ..
T Consensus       244 ~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~  322 (434)
T PRK14901        244 VAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQW  322 (434)
T ss_pred             HHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccc
Confidence            334444 56778999999999999999998764 468999996 7777666442      468899999876 3    22


Q ss_pred             C--CcEEEec------ccccCCCh-------HH-------HHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          251 E--ADTILMK------WVLSSFDD-------EQ-------SLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       251 ~--~D~i~~~------~vlh~~~~-------~~-------~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      .  .|.|++-      .++++.++       ++       ..++|+++.+.|+|||+|+..+...
T Consensus       323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            2  3999862      35554443       11       3688999999999999999876554

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.52  E-value=4.7e-07  Score=75.44  Aligned_cols=103  Identities=17%  Similarity=0.243  Sum_probs=74.3

Q ss_pred             HHHHHhcCCCC--CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCC-CceEEEccCCC--CCCCC--cE
Q 018405          183 KVLESYKGFEH--VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYL-GIEHVGGDFFE--SVPEA--DT  254 (356)
Q Consensus       183 ~~~~~~~~~~~--~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~v~~~~~D~~~--~~~~~--D~  254 (356)
                      .-++.+. +.+  ..-|||||||+|..+..+..  ++-..+++|. |.|++.|.+.. .-.++.+|+-+  |++.+  |.
T Consensus        39 RaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg  115 (270)
T KOG1541|consen   39 RALELLA-LPGPKSGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDG  115 (270)
T ss_pred             HHHHHhh-CCCCCCcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccce
Confidence            3344444 444  78899999999999988877  5677999996 99999987531 13577788877  55554  87


Q ss_pred             EEeccccc---------CCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          255 ILMKWVLS---------SFDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       255 i~~~~vlh---------~~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      +++...+.         |.|......++..++..|++|++.++
T Consensus       116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~  158 (270)
T KOG1541|consen  116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL  158 (270)
T ss_pred             EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence            76654442         22333455778889999999998877

>PHA03412 putative methyltransferase; Provisional

Probab=98.52  E-value=5.7e-07  Score=77.11  Aligned_cols=94  Identities=12%  Similarity=0.130  Sum_probs=70.3

Q ss_pred             CceEEEEcCCccHHHHHHHHhC---CCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC-cEEEecccccCCCh
Q 018405          194 VKKLVDVGGGLGATLNMIISKY---PRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA-DTILMKWVLSSFDD  266 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~~  266 (356)
                      ..+|||+|||+|.++..++++.   +..+++++|+ +.+++.+++. .++.++.+|+.. +.+.. |+|+++--.+....
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~  129 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT  129 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence            5799999999999999998864   4568999996 8888888765 678999999987 44333 99998765553221


Q ss_pred             ----------HHHHHHHHHHHHhCCCCCEEEE
Q 018405          267 ----------EQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       267 ----------~~~~~~L~~~~~~L~pgG~lii  288 (356)
                                .-...+++++.++++||+ +|+
T Consensus       130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL  160 (241)
T PHA03412        130 SDFKGKYTGAEFEYKVIERASQIARQGT-FII  160 (241)
T ss_pred             cccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence                      124568899998666665 444

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.51  E-value=1.8e-07  Score=79.11  Aligned_cols=91  Identities=23%  Similarity=0.358  Sum_probs=67.0

Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------CCCceEEEccCCCC----CCCC--cEEEecccc
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------YLGIEHVGGDFFES----VPEA--DTILMKWVL  261 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~----~~~~--D~i~~~~vl  261 (356)
                      ..+||||||.|.++..++..+|+..++|+|. ...+..+.+      .+++.++.+|...-    ++++  |-|.+.   
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~---   95 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN---   95 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE---
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe---
Confidence            3899999999999999999999999999995 555554432      37899999998761    3333  655553   


Q ss_pred             cCCChHH-----------HHHHHHHHHHhCCCCCEEEEEe
Q 018405          262 SSFDDEQ-----------SLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       262 h~~~~~~-----------~~~~L~~~~~~L~pgG~lii~e  290 (356)
                        +||+.           ...+|+.+.+.|+|||.|.+..
T Consensus        96 --FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T  133 (195)
T PF02390_consen   96 --FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT  133 (195)
T ss_dssp             --S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence              23331           3589999999999999998865

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.48  E-value=5.3e-07  Score=76.61  Aligned_cols=112  Identities=18%  Similarity=0.276  Sum_probs=71.0

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC---------------CCCceEEEcc
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS---------------YLGIEHVGGD  244 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~D  244 (356)
                      ...+++.+. +.+...++|+|||.|......+..++--+++|+++ +...+.|..               ..++++..+|
T Consensus        31 ~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd  109 (205)
T PF08123_consen   31 VSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD  109 (205)
T ss_dssp             HHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred             HHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence            345666676 77889999999999999998887776666999985 654443321               1467889999


Q ss_pred             CCC-C-----CCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCC
Q 018405          245 FFE-S-----VPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV  296 (356)
Q Consensus       245 ~~~-~-----~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~  296 (356)
                      +.+ +     +.++|+|++++.+.  + ++...-|.+....||||.+++-...+.+..
T Consensus       110 fl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~  164 (205)
T PF08123_consen  110 FLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIISTKPFCPRR  164 (205)
T ss_dssp             TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred             ccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence            987 3     24579999998864  3 456667788888999999988776666543

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.43  E-value=1.6e-06  Score=82.58  Aligned_cols=104  Identities=21%  Similarity=0.218  Sum_probs=75.5

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C-C-CC-CcEEEe-
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S-V-PE-ADTILM-  257 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~-~-~~-~D~i~~-  257 (356)
                      ..+..+|||+|||+|..+..++... ++.+++++|. +..++.++++      .+++++.+|... + . ++ .|.|++ 
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D  314 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD  314 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence            5677899999999999999999876 4578999996 7777666543      457888999876 3 2 22 399986 


Q ss_pred             -----cccccC-------CChH-------HHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          258 -----KWVLSS-------FDDE-------QSLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       258 -----~~vlh~-------~~~~-------~~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                           ..++..       ++.+       ...++|.++.+.|+|||.++.......
T Consensus       315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  370 (431)
T PRK14903        315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT  370 (431)
T ss_pred             CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence                 222222       1211       126789999999999999888766554

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.42  E-value=9.5e-07  Score=77.76  Aligned_cols=103  Identities=21%  Similarity=0.315  Sum_probs=77.4

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------C----CceEEEccCCCC-
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------L----GIEHVGGDFFES-  248 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----~v~~~~~D~~~~-  248 (356)
                      .+++.+.  ++...++|+|||-|+=+...-++-- -.++++|+ ...+++|+++        .    .+.|+.+|.+.. 
T Consensus       109 ~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~  185 (389)
T KOG1975|consen  109 VLINLYT--KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER  185 (389)
T ss_pred             HHHHHHh--ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence            4555553  5678899999999987777665321 25899998 5558888654        1    267888888751 


Q ss_pred             ----C----CCCcEEEecccccC-C-ChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          249 ----V----PEADTILMKWVLSS-F-DDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       249 ----~----~~~D~i~~~~vlh~-~-~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                          .    |..|+|.|.+++|+ | +.+.+.-+|+++.+.|+|||.+|-
T Consensus       186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg  235 (389)
T KOG1975|consen  186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG  235 (389)
T ss_pred             HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence                1    22499999999998 3 566788999999999999999887

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.42  E-value=1.9e-06  Score=76.83  Aligned_cols=104  Identities=17%  Similarity=0.238  Sum_probs=73.7

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CC--CCCcEEEec-
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SV--PEADTILMK-  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~--~~~D~i~~~-  258 (356)
                      ..+..+|||+|||+|..+..+++... ...++++|. +..++.++++      .+++++..|... +.  +..|.|++- 
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~  148 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA  148 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence            55678999999999999999988775 358999996 7776655432      467888888755 22  234999862 


Q ss_pred             -----ccccC-------CChHH-------HHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          259 -----WVLSS-------FDDEQ-------SLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       259 -----~vlh~-------~~~~~-------~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                           .++..       ++.++       ..++|+++.+.|+|||+|+.......
T Consensus       149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~  203 (264)
T TIGR00446       149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE  203 (264)
T ss_pred             CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence                 12221       22222       24699999999999999987765543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.37  E-value=1.3e-06  Score=74.48  Aligned_cols=100  Identities=17%  Similarity=0.220  Sum_probs=79.1

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEE-ccCCCCC----CCC-cEE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVG-GDFFESV----PEA-DTI  255 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~-~D~~~~~----~~~-D~i  255 (356)
                      .+++++|||||.+.|..+..++...| +.+.+.+|. ++..+.|+++       ++|+.+. +|..+..    .+. |+|
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            56889999999999999999999999 788999996 8888888764       5688888 5776521    222 999


Q ss_pred             EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405          256 LMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE  295 (356)
Q Consensus       256 ~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~  295 (356)
                      ++-     ....+-.+.|..+.++|+|||.+++-+...+.
T Consensus       137 FID-----adK~~yp~~le~~~~lLr~GGliv~DNvl~~G  171 (219)
T COG4122         137 FID-----ADKADYPEYLERALPLLRPGGLIVADNVLFGG  171 (219)
T ss_pred             EEe-----CChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence            873     33345689999999999999988886655543

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.36  E-value=4.8e-06  Score=66.52  Aligned_cols=112  Identities=20%  Similarity=0.314  Sum_probs=87.4

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhC-CCCCCceEEEccCCC-C-----CC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNA-PSYLGIEHVGGDFFE-S-----VP  250 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a-~~~~~v~~~~~D~~~-~-----~~  250 (356)
                      .++.+.+.++ +....-|||+|.|||.++.+++++- +....+.++. ++..... +..+.++++.||.++ .     .+
T Consensus        36 lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~  114 (194)
T COG3963          36 LARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK  114 (194)
T ss_pred             HHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence            3455566666 7788899999999999999998854 5555666664 5544443 445889999999886 3     22


Q ss_pred             C--CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          251 E--ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       251 ~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      .  .|.|++..-+-.+|-....++|+++...|++||.++.....
T Consensus       115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            2  29999999999999888999999999999999999887654

>PLN02476 O-methyltransferase

Probab=98.35  E-value=2.5e-06  Score=75.65  Aligned_cols=98  Identities=15%  Similarity=0.097  Sum_probs=75.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC--------C-CC
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV--------P-EA  252 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~--------~-~~  252 (356)
                      ..+..+|||||+++|..+..++...| +-+++.+|. ++..+.|++.       ++|+++.+|..+..        . ..
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            55789999999999999999999875 557888886 7666666542       68999999986621        1 23


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      |+|++-     -+..+-...++.+.+.|+|||.+++-+...
T Consensus       196 D~VFID-----a~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~  231 (278)
T PLN02476        196 DFAFVD-----ADKRMYQDYFELLLQLVRVGGVIVMDNVLW  231 (278)
T ss_pred             CEEEEC-----CCHHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence            998874     234567899999999999999988755444

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.34  E-value=4.1e-06  Score=75.95  Aligned_cols=145  Identities=16%  Similarity=0.077  Sum_probs=92.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEE----ccCCCC--CCC--CcEE
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVG----GDFFES--VPE--ADTI  255 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~----~D~~~~--~~~--~D~i  255 (356)
                      ...++||||||+|.....++.+.++++++++|+ +..++.|+..        ++|++..    .+++..  .+.  .|+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            457999999999998888888889999999996 7777777642        3566653    233332  122  2999


Q ss_pred             EecccccCCChHH---HHHHHHHH----------------HHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhh
Q 018405          256 LMKWVLSSFDDEQ---SLKLLKNC----------------YKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQ  316 (356)
Q Consensus       256 ~~~~vlh~~~~~~---~~~~L~~~----------------~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (356)
                      +|+--+|.-..+.   ...-.+++                .+++.+||.+-++..+..+.      ..+.....+ +..+
T Consensus       194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS------~~~~~~~gw-ftsm  266 (321)
T PRK11727        194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES------KAFAKQVLW-FTSL  266 (321)
T ss_pred             EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH------HHHHhhCcE-EEEE
Confidence            9998888644332   11222222                23445777776666655432      111111111 1111


Q ss_pred             cCCCccCCHHHHHHHHHHcCCcceeEEEcc
Q 018405          317 VPHGRERTKQEYSELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       317 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~  346 (356)
                        =++.-+.+.+.+.|++.|.+.++++.+.
T Consensus       267 --v~kk~~l~~l~~~L~~~~~~~~~~~e~~  294 (321)
T PRK11727        267 --VSKKENLPPLYRALKKVGAVEVKTIEMA  294 (321)
T ss_pred             --eeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence              1455589999999999999888888764

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.34  E-value=3.9e-06  Score=80.48  Aligned_cols=100  Identities=12%  Similarity=0.097  Sum_probs=69.5

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC----
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES----  248 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~----  248 (356)
                      ....+++.+. ..+..+|||+|||+|.++..+++..  .+++++|. +.+++.|+++      ++++++.+|+.+.    
T Consensus       285 l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~  361 (443)
T PRK13168        285 MVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ  361 (443)
T ss_pred             HHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh
Confidence            3445555554 5566899999999999999999875  57999996 8888777643      4689999998652    


Q ss_pred             -CCC--CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          249 -VPE--ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       249 -~~~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                       ++.  .|+|++.     -|.......++.+.+ ++|++.+++
T Consensus       362 ~~~~~~fD~Vi~d-----PPr~g~~~~~~~l~~-~~~~~ivyv  398 (443)
T PRK13168        362 PWALGGFDKVLLD-----PPRAGAAEVMQALAK-LGPKRIVYV  398 (443)
T ss_pred             hhhcCCCCEEEEC-----cCCcChHHHHHHHHh-cCCCeEEEE
Confidence             222  2998773     222223455555555 588887777

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.34  E-value=2e-06  Score=75.04  Aligned_cols=105  Identities=15%  Similarity=0.255  Sum_probs=75.9

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHH-hCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIIS-KYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP  250 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~  250 (356)
                      +..|+..++ +.++.+|||.|.|+|.++..|+. -.|.-++..+|. ++..+.|++.       ++|++...|+.+ .++
T Consensus        29 ~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~  107 (247)
T PF08704_consen   29 ISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD  107 (247)
T ss_dssp             HHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred             HHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence            345666676 88999999999999999999997 458889999995 7777666542       579999999865 342


Q ss_pred             ----CC-cEEEecccccCCChHHHHHHHHHHHHhC-CCCCEEEEEeccc
Q 018405          251 ----EA-DTILMKWVLSSFDDEQSLKLLKNCYKAL-PDGGKLLNVNVTI  293 (356)
Q Consensus       251 ----~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L-~pgG~lii~e~~~  293 (356)
                          .. |.|++     ++|+  +-..+..+.++| +|||++.+.-+..
T Consensus       108 ~~~~~~~DavfL-----Dlp~--Pw~~i~~~~~~L~~~gG~i~~fsP~i  149 (247)
T PF08704_consen  108 EELESDFDAVFL-----DLPD--PWEAIPHAKRALKKPGGRICCFSPCI  149 (247)
T ss_dssp             TT-TTSEEEEEE-----ESSS--GGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred             ccccCcccEEEE-----eCCC--HHHHHHHHHHHHhcCCceEEEECCCH
Confidence                22 88887     5655  578899999999 8999999966544

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.32  E-value=3e-06  Score=75.09  Aligned_cols=92  Identities=16%  Similarity=0.308  Sum_probs=63.0

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCceEEEccCCC-CCCCCc
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIEHVGGDFFE-SVPEAD  253 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~D  253 (356)
                      ....+++.++ ..+..+|||||||+|.++..++++.+.  ++++|. +.+++.++.    .++++++.+|+.+ +.+..|
T Consensus        17 i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d   93 (253)
T TIGR00755        17 VIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP   93 (253)
T ss_pred             HHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence            3456666665 667889999999999999999998875  677774 666655543    3679999999988 555334


Q ss_pred             --EEEecccccCCChHHHHHHHHHHHH
Q 018405          254 --TILMKWVLSSFDDEQSLKLLKNCYK  278 (356)
Q Consensus       254 --~i~~~~vlh~~~~~~~~~~L~~~~~  278 (356)
                        .+++++.-++++    ..++.++..
T Consensus        94 ~~~~vvsNlPy~i~----~~il~~ll~  116 (253)
T TIGR00755        94 KQLKVVSNLPYNIS----SPLIFKLLE  116 (253)
T ss_pred             CcceEEEcCChhhH----HHHHHHHhc
Confidence              344445545554    344444443

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.31  E-value=3.9e-07  Score=77.51  Aligned_cols=97  Identities=21%  Similarity=0.257  Sum_probs=73.9

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC-------CC--CCc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES-------VP--EAD  253 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~-------~~--~~D  253 (356)
                      .++.+|||||+++|..+..+++..| +.+++.+|. +...+.|++.       ++|+++.+|..+.       .+  ..|
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            3689999999999999999999887 589999996 7766666542       6899999998651       11  229


Q ss_pred             EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      +|++-.     ...+....+..+.+.|+|||.+++-+...
T Consensus       124 ~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~  158 (205)
T PF01596_consen  124 FVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW  158 (205)
T ss_dssp             EEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred             EEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence            998843     33457888999999999999888855544

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.29  E-value=4.1e-06  Score=74.36  Aligned_cols=82  Identities=17%  Similarity=0.288  Sum_probs=61.4

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCceEEEccCCC-CCCCCc
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIEHVGGDFFE-SVPEAD  253 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~D  253 (356)
                      ....+++.+. ..+..+|||||||+|.++..++++.  .+++++|. +.+++.+++    .++++++.+|+.+ +++..|
T Consensus        17 ~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d   93 (258)
T PRK14896         17 VVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN   93 (258)
T ss_pred             HHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence            3456666665 6677899999999999999999984  46888885 666666543    3679999999988 666568


Q ss_pred             EEEecccccCCC
Q 018405          254 TILMKWVLSSFD  265 (356)
Q Consensus       254 ~i~~~~vlh~~~  265 (356)
                      .|+++.. ++.+
T Consensus        94 ~Vv~NlP-y~i~  104 (258)
T PRK14896         94 KVVSNLP-YQIS  104 (258)
T ss_pred             EEEEcCC-cccC
Confidence            8777544 4444

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.27  E-value=2.5e-06  Score=70.96  Aligned_cols=101  Identities=19%  Similarity=0.119  Sum_probs=65.6

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC---------CCCceEEEccCCCC------CCC-CcE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS---------YLGIEHVGGDFFES------VPE-ADT  254 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~------~~~-~D~  254 (356)
                      ..+..+|||+|||+|..+..++..++..+++..|.+++++..+.         ..++.+...|..++      .+. .|+
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            34678999999999999999988877778888897555543322         25678888776552      122 399


Q ss_pred             EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      |+.+.++|+-  +....+++-+.++|+|+|.+++....+
T Consensus       123 IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  123 ILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             EEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             EEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            9999999964  668999999999999999877766554

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.26  E-value=2.1e-06  Score=73.99  Aligned_cols=95  Identities=20%  Similarity=0.315  Sum_probs=68.4

Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----C--CCceEEEccCCC---C-CCCC--cEEEecccc
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----Y--LGIEHVGGDFFE---S-VPEA--DTILMKWVL  261 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~v~~~~~D~~~---~-~~~~--D~i~~~~vl  261 (356)
                      ..+||||||.|.++..+++++|+..++|++. ...+..+.+    .  .++.++++|...   . .+++  |-|.+.+.=
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            5899999999999999999999999999995 444443322    1  488999998765   1 3342  655553221


Q ss_pred             cCCChHH-------HHHHHHHHHHhCCCCCEEEEEe
Q 018405          262 SSFDDEQ-------SLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       262 h~~~~~~-------~~~~L~~~~~~L~pgG~lii~e  290 (356)
                       -|+...       ...+|+.+.+.|+|||.|.+..
T Consensus       130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT  164 (227)
T COG0220         130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT  164 (227)
T ss_pred             -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence             122111       3479999999999999999854

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.24  E-value=2.1e-06  Score=81.65  Aligned_cols=126  Identities=21%  Similarity=0.244  Sum_probs=77.2

Q ss_pred             hhhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCC---CCceEEEEcCCccHHHHHHHHhC----CCCeEEEccc-h
Q 018405          155 IYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFE---HVKKLVDVGGGLGATLNMIISKY----PRIKGINYDL-P  226 (356)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vLDiG~G~G~~~~~l~~~~----p~~~~~~~D~-~  226 (356)
                      .|+-+++|+..-..|.+++.       ..+.+.....+   +...|+|||||+|.++...+++.    ...++.+++- +
T Consensus       152 tYe~fE~D~vKY~~Ye~AI~-------~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~  224 (448)
T PF05185_consen  152 TYEVFEKDPVKYDQYERAIE-------EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP  224 (448)
T ss_dssp             HHHHHCC-HHHHHHHHHHHH-------HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred             cHhhHhcCHHHHHHHHHHHH-------HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence            35666777665555555442       23333333111   25689999999999987776654    3468888883 4


Q ss_pred             HHHHhC----C--C-CCCceEEEccCCC-CCCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEE
Q 018405          227 YVIKNA----P--S-YLGIEHVGGDFFE-SVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLL  287 (356)
Q Consensus       227 ~~~~~a----~--~-~~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~li  287 (356)
                      ......    .  . .++|+++.+|+.+ ..|+- |+|++-..-.....|-....|..+.+.|+|||.++
T Consensus       225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            433221    1  1 1789999999999 66654 99988655444444556677888899999998654

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.23  E-value=3.7e-06  Score=74.82  Aligned_cols=97  Identities=25%  Similarity=0.350  Sum_probs=75.7

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCC---CCCC-CcEEEe
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFE---SVPE-ADTILM  257 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~~-~D~i~~  257 (356)
                      .+++||-||+|.|..++++++..+--+++.+|+ +.+++.+++.          +|++++..|..+   ..+. .|+|++
T Consensus        76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~  155 (282)
T COG0421          76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV  155 (282)
T ss_pred             CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence            347999999999999999999888788999996 8898888653          789999999876   2333 399988


Q ss_pred             cccccCCChH--HHHHHHHHHHHhCCCCCEEEEE
Q 018405          258 KWVLSSFDDE--QSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       258 ~~vlh~~~~~--~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      -..=..-+-+  -...+++.|+++|+|+|.++..
T Consensus       156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            4432210000  1378999999999999999997

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.22  E-value=1.2e-05  Score=72.01  Aligned_cols=113  Identities=15%  Similarity=0.252  Sum_probs=78.6

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC----CCceE--EEccCC---CCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY----LGIEH--VGGDFF---ESV  249 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~~v~~--~~~D~~---~~~  249 (356)
                      +.++...+++ -.+.+|||+|+|.|..+-+..+.++.. +++.+|. +.+.+.++..    .....  ...++.   .+.
T Consensus        22 l~El~~r~p~-f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  100 (274)
T PF09243_consen   22 LSELRKRLPD-FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF  100 (274)
T ss_pred             HHHHHHhCcC-CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC
Confidence            3444445553 356799999999999888888888754 5788895 7776655431    11111  011111   123


Q ss_pred             CCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCC
Q 018405          250 PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV  296 (356)
Q Consensus       250 ~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~  296 (356)
                      +..|+|+++++|-.++++....+++++.+.+.+  .|+|+|+-.+..
T Consensus       101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G  145 (274)
T PF09243_consen  101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG  145 (274)
T ss_pred             CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence            344999999999999988888999999888775  999999876543

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.22  E-value=4.6e-06  Score=74.62  Aligned_cols=81  Identities=12%  Similarity=0.237  Sum_probs=59.0

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCCC--c
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPEA--D  253 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D  253 (356)
                      ...+++.+. ..+..+|||||||+|.++..++++.+  +++++|. +.+++.+++.   ++++++.+|+.+ +.++-  |
T Consensus        31 ~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~  107 (272)
T PRK00274         31 LDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL  107 (272)
T ss_pred             HHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence            345566565 66778999999999999999999876  6778885 7777766543   589999999988 55442  5


Q ss_pred             EEEecccccCCC
Q 018405          254 TILMKWVLSSFD  265 (356)
Q Consensus       254 ~i~~~~vlh~~~  265 (356)
                      .|+++ .-++.+
T Consensus       108 ~vv~N-lPY~is  118 (272)
T PRK00274        108 KVVAN-LPYNIT  118 (272)
T ss_pred             eEEEe-CCccch
Confidence            55544 444443

>PLN02823 spermine synthase

Probab=98.18  E-value=6.1e-06  Score=75.54  Aligned_cols=96  Identities=18%  Similarity=0.185  Sum_probs=70.6

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCCC--C-CCC-cEEEe
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFES--V-PEA-DTILM  257 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~--~-~~~-D~i~~  257 (356)
                      .+.+||.||+|.|..+..+++..+..+++.+|+ +.+++.+++          .+|++++.+|...-  . ++. |+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            568999999999999999998666667888996 888877764          26899999998762  2 223 99998


Q ss_pred             cccccCCCh--H---HHHHHHH-HHHHhCCCCCEEEEE
Q 018405          258 KWVLSSFDD--E---QSLKLLK-NCYKALPDGGKLLNV  289 (356)
Q Consensus       258 ~~vlh~~~~--~---~~~~~L~-~~~~~L~pgG~lii~  289 (356)
                      -.. ..+..  .   -...+++ .+++.|+|||.+++.
T Consensus       183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            521 11100  0   0346787 899999999998764

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.18  E-value=9.7e-06  Score=71.79  Aligned_cols=95  Identities=21%  Similarity=0.196  Sum_probs=71.8

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVLSS  263 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~  263 (356)
                      ..+-|||||||+|.++...+.+. -.++..++-..+.+.|++.       +||.++.|.+.+ ..|+- |+|++--.-+-
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m  255 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM  255 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence            45789999999999988766643 3367777777777776542       789999999999 78876 99988665555


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      +-+|.....--.+++.|+|.|+++=
T Consensus       256 L~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  256 LVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             hhhHHHHHHHHHHHhhcCCCCcccC
Confidence            5556555555668899999998653

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.15  E-value=1e-05  Score=68.53  Aligned_cols=94  Identities=12%  Similarity=0.050  Sum_probs=63.3

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCC--C-C-CcEEEecccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESV--P-E-ADTILMKWVL  261 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~--~-~-~D~i~~~~vl  261 (356)
                      +..+|||+|||+|.++..++.+.. .+++++|. +..++.++++      .+++++.+|+++..  . . .|+|++.--.
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy  131 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF  131 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence            457999999999999987665543 57888885 7766655432      46889999987622  2 2 3999986553


Q ss_pred             cCCChHHHHHHHHHHHH--hCCCCCEEEEEe
Q 018405          262 SSFDDEQSLKLLKNCYK--ALPDGGKLLNVN  290 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~--~L~pgG~lii~e  290 (356)
                      +.   .-...+++.+.+  .|+|++.+++-.
T Consensus       132 ~~---g~~~~~l~~l~~~~~l~~~~iv~ve~  159 (199)
T PRK10909        132 RK---GLLEETINLLEDNGWLADEALIYVES  159 (199)
T ss_pred             CC---ChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence            32   123445555544  378888766643

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=7.5e-06  Score=67.94  Aligned_cols=90  Identities=20%  Similarity=0.204  Sum_probs=67.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC--CCCeEEEccc-hHHHHhCCCC----------------CCceEEEccCCCCCC-
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY--PRIKGINYDL-PYVIKNAPSY----------------LGIEHVGGDFFESVP-  250 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~----------------~~v~~~~~D~~~~~~-  250 (356)
                      +.+..+.||||+|+|.++..++.-.  ++...+++|. |+.++.+.+.                .++.+++||...-++ 
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e  159 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE  159 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence            5688999999999999988777432  4444488885 8887766542                568899999988333 


Q ss_pred             CC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          251 EA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       251 ~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      .+  |.|.+-..        ..++.+++-.-|+|||+++|
T Consensus       160 ~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrlli  191 (237)
T KOG1661|consen  160 QAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLI  191 (237)
T ss_pred             cCCcceEEEccC--------ccccHHHHHHhhccCCeEEE
Confidence            33  99887632        45666777788999999998

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.12  E-value=1.9e-05  Score=71.72  Aligned_cols=104  Identities=13%  Similarity=0.236  Sum_probs=76.5

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC----CCeEEEccc-hHHHHhCCC------CCCceE--EEccCCCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP----RIKGINYDL-PYVIKNAPS------YLGIEH--VGGDFFES  248 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~------~~~v~~--~~~D~~~~  248 (356)
                      ..|+..++   +...|+|+|||+|.-+..|++.+.    ..+++.+|+ ...++.+..      .+.+++  +.+|+.+.
T Consensus        68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            45555554   556899999999998887777663    467999996 455554422      255665  78888652


Q ss_pred             ---CC-----C-CcEE-EecccccCCChHHHHHHHHHHHH-hCCCCCEEEE
Q 018405          249 ---VP-----E-ADTI-LMKWVLSSFDDEQSLKLLKNCYK-ALPDGGKLLN  288 (356)
Q Consensus       249 ---~~-----~-~D~i-~~~~vlh~~~~~~~~~~L~~~~~-~L~pgG~lii  288 (356)
                         .+     . ..++ ++-+++.+++++++..+|+++++ .|+|||.++|
T Consensus       145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence               11     1 2555 55679999999999999999999 9999998888

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.12  E-value=6.8e-06  Score=68.98  Aligned_cols=142  Identities=20%  Similarity=0.149  Sum_probs=94.2

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCc--eEEEccCCC-CCCCC--cEEEecccccC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGI--EHVGGDFFE-SVPEA--DTILMKWVLSS  263 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v--~~~~~D~~~-~~~~~--D~i~~~~vlh~  263 (356)
                      +....++|||||.|.....+..+.- -+.+..|. ..+++.++..  +.+  .+..+|-.. ++.+.  |+|+.+..+|.
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW  149 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW  149 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence            3557899999999999999998652 25778885 7788888765  444  455677655 66665  99999999996


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccC------CHHHHHHHHHHcCC
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRER------TKQEYSELAIKAGF  337 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------t~~e~~~ll~~aGf  337 (356)
                      .+|  ...-+.+|..+|||+|.++-. .+..+.    . .+.....-+..+-. .+|...      ...++-.+|..|||
T Consensus       150 ~Nd--LPg~m~~ck~~lKPDg~Fias-mlggdT----L-yELR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rAGF  220 (325)
T KOG2940|consen  150 TND--LPGSMIQCKLALKPDGLFIAS-MLGGDT----L-YELRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRAGF  220 (325)
T ss_pred             hcc--CchHHHHHHHhcCCCccchhH-Hhcccc----H-HHHHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhcCc
Confidence            643  889999999999999977652 222111    0 11111111111111 122211      24578889999999


Q ss_pred             cceeEE
Q 018405          338 KGVNYE  343 (356)
Q Consensus       338 ~~~~~~  343 (356)
                      ....+-
T Consensus       221 ~m~tvD  226 (325)
T KOG2940|consen  221 SMLTVD  226 (325)
T ss_pred             ccceec
Confidence            987653

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.12  E-value=8.5e-06  Score=71.29  Aligned_cols=98  Identities=16%  Similarity=0.115  Sum_probs=73.7

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCC-------CCCceEEEccCCCC--C-------CCC
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPS-------YLGIEHVGGDFFES--V-------PEA  252 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~--~-------~~~  252 (356)
                      ..+..+|||||.++|..+..++...| +.+++.+|. +...+.|++       .++|+++.||..+.  .       ...
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~  156 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT  156 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence            34678999999999999999998874 678999985 766666543       27899999988662  1       123


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                       |+|++-.     ........++.+.+.|+|||.+++-+...
T Consensus       157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~DNvl~  193 (247)
T PLN02589        157 FDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_pred             ccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence             9998842     23456788999999999999977744433

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.09  E-value=1.3e-05  Score=81.00  Aligned_cols=96  Identities=16%  Similarity=0.117  Sum_probs=70.0

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCC---CCC-CcEEEecc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFES---VPE-ADTILMKW  259 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~---~~~-~D~i~~~~  259 (356)
                      +..+|||+|||+|.++..++.. ...+++++|. +.+++.++++        ++++++.+|+++.   .+. .|+|++.-
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            5689999999999999999985 2336999996 7777777643        3689999998762   222 39999831


Q ss_pred             cc-------cC-C-ChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          260 VL-------SS-F-DDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       260 vl-------h~-~-~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      --       .. + ...+...+++.+.+.|+|||.+++.
T Consensus       617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~  655 (702)
T PRK11783        617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS  655 (702)
T ss_pred             CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            10       00 0 0123567899999999999988774

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.07  E-value=8.1e-05  Score=64.37  Aligned_cols=145  Identities=12%  Similarity=0.109  Sum_probs=82.2

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHH-hCCCCCCce-EEEccCCC-C---C-CC-
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIK-NAPSYLGIE-HVGGDFFE-S---V-PE-  251 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~v~-~~~~D~~~-~---~-~~-  251 (356)
                      ...+++.++...+..++||+|||+|.++..+++. +-.+++++|. +.++. ..+..+++. +...|+.. .   . ++ 
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~  141 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF  141 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence            4455555542235679999999999999999986 3457999996 53444 455556654 33334442 1   1 11 


Q ss_pred             --CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE-EecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405          252 --ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN-VNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY  328 (356)
Q Consensus       252 --~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~  328 (356)
                        .|+++++..          .+|..+.++|+| |.+++ +.+-.+-.+..  ........+-.       ....-.+++
T Consensus       142 ~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~--~~~~giv~~~~-------~~~~~~~~~  201 (228)
T TIGR00478       142 ATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREK--KNKKGVVRDKE-------AIALALHKV  201 (228)
T ss_pred             eeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhh--cCcCCeecCHH-------HHHHHHHHH
Confidence              165555433          357789999999 65544 33322211100  00000011100       011234567


Q ss_pred             HHHHHHcCCcceeEEEcc
Q 018405          329 SELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       329 ~~ll~~aGf~~~~~~~~~  346 (356)
                      ...+.+.||++..+.+++
T Consensus       202 ~~~~~~~~~~~~~~~~s~  219 (228)
T TIGR00478       202 IDKGESPDFQEKKIIFSL  219 (228)
T ss_pred             HHHHHcCCCeEeeEEECC
Confidence            778888999999888875

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.05  E-value=8.8e-05  Score=65.38  Aligned_cols=134  Identities=19%  Similarity=0.252  Sum_probs=91.4

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchH-H-------HHhCC---C---------------------------
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPY-V-------IKNAP---S---------------------------  234 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~-~-------~~~a~---~---------------------------  234 (356)
                      ...+||-=|||.|.++..++..  +..+.+.+... |       +....   +                           
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            4579999999999999999997  34444444321 1       11100   0                           


Q ss_pred             ---------CCCceEEEccCCC-CCCC----C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCC
Q 018405          235 ---------YLGIEHVGGDFFE-SVPE----A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN  299 (356)
Q Consensus       235 ---------~~~v~~~~~D~~~-~~~~----~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~  299 (356)
                               .+++....|||.+ ..++    . |+|+.++.+.--  ++....|+.|+++|||||..|=+.+..-.....
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~  211 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM  211 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence                     0357788899988 3223    2 999888777654  458999999999999999887777665432100


Q ss_pred             chhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405          300 SATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  344 (356)
                                +   .. ....-+.+.+|+..+.++.||++++-..
T Consensus       212 ----------~---~~-~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  212 ----------S---IP-NEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             ----------C---CC-CCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence                      0   00 0123457899999999999999986544

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.04  E-value=2.3e-05  Score=70.68  Aligned_cols=90  Identities=20%  Similarity=0.336  Sum_probs=64.1

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-------CCCceEEEccCCC-CCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-------YLGIEHVGGDFFE-SVP  250 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~~  250 (356)
                      .+..+++... ..+..+|||||||+|.++..+++...  +++++|+ +.+++.+++       .++++++.+|+.+ +.+
T Consensus        24 i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~  100 (294)
T PTZ00338         24 VLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP  100 (294)
T ss_pred             HHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence            3456666665 66778999999999999999998754  5777775 666665543       3579999999987 555


Q ss_pred             CCcEEEecccccCCChHHHHHHH
Q 018405          251 EADTILMKWVLSSFDDEQSLKLL  273 (356)
Q Consensus       251 ~~D~i~~~~vlh~~~~~~~~~~L  273 (356)
                      ..|+|++ +.-++++.+-..++|
T Consensus       101 ~~d~Vva-NlPY~Istpil~~ll  122 (294)
T PTZ00338        101 YFDVCVA-NVPYQISSPLVFKLL  122 (294)
T ss_pred             ccCEEEe-cCCcccCcHHHHHHH
Confidence            5587665 555556555444555

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.04  E-value=3.1e-05  Score=72.70  Aligned_cols=98  Identities=16%  Similarity=0.084  Sum_probs=68.2

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCCC------C-CCcEEE
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFESV------P-EADTIL  256 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~------~-~~D~i~  256 (356)
                      +..+|||+|||+|.++...+.. ...+++.+|. +.+++.++++        ++++++.+|+++..      . ..|+|+
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            5689999999999998775542 3448999996 7777766542        26889999988721      1 239999


Q ss_pred             ecccccCCCh-------HHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          257 MKWVLSSFDD-------EQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       257 ~~~vlh~~~~-------~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      +.---..-+.       .....+++.+.+.|+|||.++.+..
T Consensus       299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            8533211111       1244566778999999999998653

>PRK00536 speE spermidine synthase; Provisional

Probab=98.03  E-value=1.8e-05  Score=69.62  Aligned_cols=89  Identities=11%  Similarity=0.099  Sum_probs=67.4

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCCCCCC-CcEEEecc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFESVPE-ADTILMKW  259 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~~~~-~D~i~~~~  259 (356)
                      ..+.+||-||||.|..++++++. |. +++.+|+ +.+++.+++.          +|++++.. +.+...+ .|+|++-.
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs  147 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ  147 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence            46799999999999999999986 54 8888886 8888777662          78887762 2222222 39999754


Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      .    .   .....+.++++|+|||.++..-
T Consensus       148 ~----~---~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        148 E----P---DIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             C----C---ChHHHHHHHHhcCCCcEEEECC
Confidence            3    1   2677899999999999999853

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.03  E-value=9.8e-06  Score=70.58  Aligned_cols=95  Identities=23%  Similarity=0.206  Sum_probs=74.8

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChH-
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDE-  267 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~-  267 (356)
                      ....++|+|||.|-++.    ..|.+-.++.|+ ...+.-+++.+.......|+.. |.++.  |..+...++||++.. 
T Consensus        45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~  120 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE  120 (293)
T ss_pred             CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence            56789999999998764    238888999997 5566666554444678889888 66543  999999999999754 


Q ss_pred             HHHHHHHHHHHhCCCCCEEEEEec
Q 018405          268 QSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       268 ~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      ....+++++.+.++|||..+|.-+
T Consensus       121 RR~~~l~e~~r~lrpgg~~lvyvw  144 (293)
T KOG1331|consen  121 RRERALEELLRVLRPGGNALVYVW  144 (293)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEe
Confidence            566999999999999998777544

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.98  E-value=2.9e-05  Score=74.34  Aligned_cols=99  Identities=14%  Similarity=0.234  Sum_probs=66.9

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC-----
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES-----  248 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~-----  248 (356)
                      ...+.+.+. ..+..+|||+|||+|.++..+++..  .+++++|. +.+++.++++      .+++++.+|+.+.     
T Consensus       281 ~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~  357 (431)
T TIGR00479       281 VDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP  357 (431)
T ss_pred             HHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH
Confidence            334444444 5567899999999999999999864  37899996 8888777653      5789999998651     


Q ss_pred             CC-C-CcEEEecccccCCChHH-HHHHHHHHHHhCCCCCEEEE
Q 018405          249 VP-E-ADTILMKWVLSSFDDEQ-SLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       249 ~~-~-~D~i~~~~vlh~~~~~~-~~~~L~~~~~~L~pgG~lii  288 (356)
                      .. . .|+|++.-     |... ...+++.+.+ ++|++.+++
T Consensus       358 ~~~~~~D~vi~dP-----Pr~G~~~~~l~~l~~-l~~~~ivyv  394 (431)
T TIGR00479       358 WAGQIPDVLLLDP-----PRKGCAAEVLRTIIE-LKPERIVYV  394 (431)
T ss_pred             hcCCCCCEEEECc-----CCCCCCHHHHHHHHh-cCCCEEEEE
Confidence            11 2 28888632     1111 2455555543 788876666

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.93  E-value=1.6e-05  Score=77.26  Aligned_cols=97  Identities=16%  Similarity=0.171  Sum_probs=68.4

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC-C-----CCCceEEEccCCC---CCCCC--cEEEeccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP-S-----YLGIEHVGGDFFE---SVPEA--DTILMKWV  260 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~-----~~~v~~~~~D~~~---~~~~~--D~i~~~~v  260 (356)
                      ....+||||||.|.++..+++.+|+..++++|. ...+..+. +     ..++.++.+|+..   .++.+  |-|++.+-
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            356899999999999999999999999999995 44333321 1     2577788777642   34544  66665432


Q ss_pred             ccCCChHH-------HHHHHHHHHHhCCCCCEEEEEe
Q 018405          261 LSSFDDEQ-------SLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       261 lh~~~~~~-------~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      == |+...       ...+|+.+.+.|+|||.+.+..
T Consensus       427 DP-WpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T  462 (506)
T PRK01544        427 DP-WIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS  462 (506)
T ss_pred             CC-CCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence            11 21110       3589999999999999998854

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.93  E-value=2e-05  Score=70.80  Aligned_cols=95  Identities=22%  Similarity=0.183  Sum_probs=69.7

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCC-CC-cEEEecccc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVP-EA-DTILMKWVL  261 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~~-D~i~~~~vl  261 (356)
                      -+.+.|||||||+|.++..-+++. -.++.++|...+++.+.+.       +.|+++.+.+.+ ..| +- |+|++-+.-
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG  137 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG  137 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence            367899999999999999877766 4578899977777666542       458888888887 666 33 999987776


Q ss_pred             cCCChH-HHHHHHHHHHHhCCCCCEEE
Q 018405          262 SSFDDE-QSLKLLKNCYKALPDGGKLL  287 (356)
Q Consensus       262 h~~~~~-~~~~~L~~~~~~L~pgG~li  287 (356)
                      +.+--+ -...+|-.=-+.|+|||.++
T Consensus       138 y~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  138 YFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            654322 24455555557899999765

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=0.00033  Score=57.03  Aligned_cols=133  Identities=18%  Similarity=0.245  Sum_probs=82.4

Q ss_pred             CceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCC----C-CCceEEEccCCCC-CCCC-cEEEecccccCC
Q 018405          194 VKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPS----Y-LGIEHVGGDFFES-VPEA-DTILMKWVLSSF  264 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~-~~v~~~~~D~~~~-~~~~-D~i~~~~vlh~~  264 (356)
                      +.-++|||||+|..+..+.+.. |+..+...|+ |..++...+    + -++..+..|+.+. .++. |+++++------
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt  123 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT  123 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence            6889999999999998888754 7888899996 776655332    1 3567888888873 2333 887765332111


Q ss_pred             ChHH-------------------HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCH
Q 018405          265 DDEQ-------------------SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTK  325 (356)
Q Consensus       265 ~~~~-------------------~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  325 (356)
                      +++.                   ..++|..+-..|.|.|.++++-..                             .-.+
T Consensus       124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~-----------------------------~N~p  174 (209)
T KOG3191|consen  124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR-----------------------------ANKP  174 (209)
T ss_pred             CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh-----------------------------hcCH
Confidence            1111                   234555555556666665553211                             1136


Q ss_pred             HHHHHHHHHcCCcceeEEEc---cCceeEEEEe
Q 018405          326 QEYSELAIKAGFKGVNYEYG---ACNLYVMEFL  355 (356)
Q Consensus       326 ~e~~~ll~~aGf~~~~~~~~---~~~~~vi~~~  355 (356)
                      +|+..+++.-||.+.....-   ....+++.++
T Consensus       175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~  207 (209)
T KOG3191|consen  175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFT  207 (209)
T ss_pred             HHHHHHHhhcccceeEEEEEecCCceEEEEEEE
Confidence            78888899999877654332   2345555444

>PRK04148 hypothetical protein; Provisional

Probab=97.92  E-value=0.00024  Score=55.69  Aligned_cols=99  Identities=17%  Similarity=0.186  Sum_probs=68.5

Q ss_pred             HHHHhcCCCCCceEEEEcCCccH-HHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCC----CCcEEEe
Q 018405          184 VLESYKGFEHVKKLVDVGGGLGA-TLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVP----EADTILM  257 (356)
Q Consensus       184 ~~~~~~~~~~~~~vLDiG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~----~~D~i~~  257 (356)
                      +.+.++ ..+..+++|||||+|. .+..|.+  .+..++++|. +..++.++.. .++++..|++++.+    .+|+|.+
T Consensus         8 l~~~~~-~~~~~kileIG~GfG~~vA~~L~~--~G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~liys   83 (134)
T PRK04148          8 IAENYE-KGKNKKIVELGIGFYFKVAKKLKE--SGFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLIYS   83 (134)
T ss_pred             HHHhcc-cccCCEEEEEEecCCHHHHHHHHH--CCCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEEEE
Confidence            444454 3345899999999996 7777775  3578999996 7777777543 67999999999543    2499988


Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      .+.     ..+....+.++.+...  .-++|.-...
T Consensus        84 irp-----p~el~~~~~~la~~~~--~~~~i~~l~~  112 (134)
T PRK04148         84 IRP-----PRDLQPFILELAKKIN--VPLIIKPLSG  112 (134)
T ss_pred             eCC-----CHHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence            654     3456666666776554  5666654443

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.91  E-value=2.8e-05  Score=71.18  Aligned_cols=64  Identities=16%  Similarity=0.151  Sum_probs=50.1

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCC-CcEEEec
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPE-ADTILMK  258 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~-~D~i~~~  258 (356)
                      ++.+|||+|||+|.++..+++  +..+++++|. +.+++.+++.      ++++++.+|+.+ .  ... .|+|++.
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            458999999999999999998  4468999996 8888777543      478999999876 2  112 3998875

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.91  E-value=0.00014  Score=61.52  Aligned_cols=130  Identities=22%  Similarity=0.272  Sum_probs=89.8

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEcc-chHHHHhCCCC--------CCceEEEccCCC---CCCCC--cEEE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYD-LPYVIKNAPSY--------LGIEHVGGDFFE---SVPEA--DTIL  256 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D-~~~~~~~a~~~--------~~v~~~~~D~~~---~~~~~--D~i~  256 (356)
                      .++..+|||.+.|-|..++.-+++.. ..++.++ .|.+++.|..+        .+|+++.||..+   .+++.  |+|+
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi  210 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII  210 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence            45678999999999999999888543 2566666 48888887654        358999999876   45543  8875


Q ss_pred             e-----cccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405          257 M-----KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL  331 (356)
Q Consensus       257 ~-----~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  331 (356)
                      -     +..-+    =-...+-+++++.|+|||+++-.-......         +            .|.. -+....+.
T Consensus       211 HDPPRfS~Age----LYseefY~El~RiLkrgGrlFHYvG~Pg~r---------y------------rG~d-~~~gVa~R  264 (287)
T COG2521         211 HDPPRFSLAGE----LYSEEFYRELYRILKRGGRLFHYVGNPGKR---------Y------------RGLD-LPKGVAER  264 (287)
T ss_pred             eCCCccchhhh----HhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------c------------ccCC-hhHHHHHH
Confidence            3     11111    125688999999999999998754322110         1            1111 25678889


Q ss_pred             HHHcCCcceeEEEccC
Q 018405          332 AIKAGFKGVNYEYGAC  347 (356)
Q Consensus       332 l~~aGf~~~~~~~~~~  347 (356)
                      |+++||.+++......
T Consensus       265 Lr~vGF~~v~~~~~~~  280 (287)
T COG2521         265 LRRVGFEVVKKVREAL  280 (287)
T ss_pred             HHhcCceeeeeehhcc
Confidence            9999999887665533

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.91  E-value=1.2e-05  Score=70.65  Aligned_cols=99  Identities=20%  Similarity=0.276  Sum_probs=72.9

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCC---CCCC-C-cEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFE---SVPE-A-DTI  255 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~~-~-D~i  255 (356)
                      +++.+||-||+|.|..+..+++..+-.+++.+|+ |.+++.+++.          +|++++.+|...   ..++ . |+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            3689999999999999999987665678888886 8888777542          689999999865   3334 4 999


Q ss_pred             EecccccCCChHH--HHHHHHHHHHhCCCCCEEEEEe
Q 018405          256 LMKWVLSSFDDEQ--SLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       256 ~~~~vlh~~~~~~--~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +.-..--..+...  ....++.+++.|+|||.+++..
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            8733321111111  3689999999999999999855

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=0.00013  Score=63.77  Aligned_cols=96  Identities=22%  Similarity=0.406  Sum_probs=66.6

Q ss_pred             HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEcc--chHHHHhC-CCCCCceEEEccCCC-CCCC--C
Q 018405          179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYD--LPYVIKNA-PSYLGIEHVGGDFFE-SVPE--A  252 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D--~~~~~~~a-~~~~~v~~~~~D~~~-~~~~--~  252 (356)
                      ..+..+++... ..+...|||||+|.|.++..|+++...+.++-+|  +...++.. ...++++++.+|+.+ ++++  .
T Consensus        17 ~v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~   95 (259)
T COG0030          17 NVIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ   95 (259)
T ss_pred             HHHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence            34567777776 6678899999999999999999998877777777  23333332 335789999999998 7775  3


Q ss_pred             cEEEecccccCCChHHHHHHHHH
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKN  275 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~  275 (356)
                      -..+.+|.=++++.+-..++|+.
T Consensus        96 ~~~vVaNlPY~Isspii~kll~~  118 (259)
T COG0030          96 PYKVVANLPYNISSPILFKLLEE  118 (259)
T ss_pred             CCEEEEcCCCcccHHHHHHHHhc
Confidence            23344555566655444444443

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.83  E-value=3.4e-05  Score=64.44  Aligned_cols=89  Identities=24%  Similarity=0.263  Sum_probs=68.0

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH---HHhCCC---CCCceEEEccCCC-CCCCC-cEEEecccccCCCh
Q 018405          196 KLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV---IKNAPS---YLGIEHVGGDFFE-SVPEA-DTILMKWVLSSFDD  266 (356)
Q Consensus       196 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~---~~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~~  266 (356)
                      +++|||+|.|..+.-++-.+|+.+++.+|. ..-   ++.+..   .++++++.+...+ ..+.. |+|++..+-     
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~-----  125 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA-----  125 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS-----
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc-----
Confidence            899999999999999999999999999994 432   222221   2679999888877 33333 999998874     


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          267 EQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       267 ~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                       ....+++-+...++|||+++..-
T Consensus       126 -~l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  126 -PLDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             -SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             -CHHHHHHHHHHhcCCCCEEEEEc
Confidence             26789999999999999998854

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.82  E-value=2e-05  Score=69.01  Aligned_cols=91  Identities=20%  Similarity=0.172  Sum_probs=60.4

Q ss_pred             EEEccCCC--CC------CC-CcEEEecccccCCC--hHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh
Q 018405          240 HVGGDFFE--SV------PE-ADTILMKWVLSSFD--DEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI  308 (356)
Q Consensus       240 ~~~~D~~~--~~------~~-~D~i~~~~vlh~~~--~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~  308 (356)
                      ++..|+..  |.      |+ +|+|++..+|....  .+.-.+.++++.++|||||.|++........          ..
T Consensus       138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----------Y~  207 (256)
T PF01234_consen  138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY----------YM  207 (256)
T ss_dssp             EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE----------EE
T ss_pred             EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee----------EE
Confidence            66788876  22      23 49999999998753  4467899999999999999999987754321          01


Q ss_pred             hhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405          309 LDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       309 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  344 (356)
                      .+-..+    ..-..+++.+++.++++||.+.+...
T Consensus       208 vG~~~F----~~l~l~ee~v~~al~~aG~~i~~~~~  239 (256)
T PF01234_consen  208 VGGHKF----PCLPLNEEFVREALEEAGFDIEDLEK  239 (256)
T ss_dssp             ETTEEE----E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred             ECCEec----ccccCCHHHHHHHHHHcCCEEEeccc
Confidence            010000    11234799999999999999988764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.81  E-value=1.6e-05  Score=74.62  Aligned_cols=98  Identities=16%  Similarity=0.239  Sum_probs=68.4

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEc---cc-hHHHHhCCCCCCceEEEccC---CCCCCCC--cEEEecccccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINY---DL-PYVIKNAPSYLGIEHVGGDF---FESVPEA--DTILMKWVLSS  263 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~v~~~~~D~---~~~~~~~--D~i~~~~vlh~  263 (356)
                      ....+||||||+|.++..++++.  +..+.+   |. +..++.|.++ +|-...+-+   .-|+|..  |+|-|+.++-.
T Consensus       117 ~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~  193 (506)
T PF03141_consen  117 GIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP  193 (506)
T ss_pred             ceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhccccccc
Confidence            45789999999999999999854  332222   32 3344454433 233333322   2277865  99999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                      |...+ ..+|-++.|+|+|||.+++..+-..
T Consensus       194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             chhcc-cceeehhhhhhccCceEEecCCccc
Confidence            97654 5688899999999999998665443

; GO: 0008168 methyltransferase activity

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.71  E-value=0.00012  Score=60.12  Aligned_cols=116  Identities=16%  Similarity=0.129  Sum_probs=75.2

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCCCcEEEecccccCCCh
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPEADTILMKWVLSSFDD  266 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~  266 (356)
                      ...+|+|+|||||.+++..+-..|. +++++|. |+.++.++++     .++++++.|+.+-....|.++++--+--+-.
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r  123 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR  123 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence            4578999999999999987765554 6788885 8888877664     4799999998874444477776544333211


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeE
Q 018405          267 EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNY  342 (356)
Q Consensus       267 ~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~  342 (356)
                      -.-..+|.++.+.-+   .                      .+++        ++.-+.+-+.+..+++|+++...
T Consensus       124 haDr~Fl~~Ale~s~---v----------------------VYsi--------H~a~~~~f~~~~~~~~G~~v~~~  166 (198)
T COG2263         124 HADRPFLLKALEISD---V----------------------VYSI--------HKAGSRDFVEKFAADLGGTVTHI  166 (198)
T ss_pred             cCCHHHHHHHHHhhh---e----------------------EEEe--------eccccHHHHHHHHHhcCCeEEEE
Confidence            111344444444321   0                      1111        11126788888999999888765

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.69  E-value=0.00013  Score=63.19  Aligned_cols=96  Identities=18%  Similarity=0.138  Sum_probs=64.0

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccC----CCCC--CCC--cEEE
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDF----FESV--PEA--DTIL  256 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~----~~~~--~~~--D~i~  256 (356)
                      ....|||+|||+|..+..++...|..+++++|. +..+..|.++       +++.++..++    +.+.  +.+  |+++
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv  227 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV  227 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence            445899999999999999999999999999996 6666655443       6777774444    3332  233  7777


Q ss_pred             ecc--cccCC----------------------ChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          257 MKW--VLSSF----------------------DDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       257 ~~~--vlh~~----------------------~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      ++-  +.+.=                      ..+....++.-+.+.|+|||.+.+
T Consensus       228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l  283 (328)
T KOG2904|consen  228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL  283 (328)
T ss_pred             cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence            642  11100                      001234556667788888887766

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.67  E-value=0.00067  Score=57.07  Aligned_cols=112  Identities=17%  Similarity=0.150  Sum_probs=77.7

Q ss_pred             hHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccchHHHHhCCCCCCceEEEccCCCC-------
Q 018405          177 TCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDLPYVIKNAPSYLGIEHVGGDFFES-------  248 (356)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~-------  248 (356)
                      +.....++.+.+.-+++..+|+|+|+-.|.++..+++... +.+++++|+.++-.    .++|.++++|+..+       
T Consensus        29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~  104 (205)
T COG0293          29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTLEKLL  104 (205)
T ss_pred             HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHHHHHH
Confidence            3344556667665477889999999999999998888664 45689999643322    25699999999873       


Q ss_pred             --CCC--CcEEEe---cccccCCCh------HHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          249 --VPE--ADTILM---KWVLSSFDD------EQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       249 --~~~--~D~i~~---~~vlh~~~~------~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                        .+.  .|+|++   .++--++.-      +-+..++.-+...|+|||.+++-..-
T Consensus       105 ~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq  161 (205)
T COG0293         105 EALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ  161 (205)
T ss_pred             HHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence              222  288874   222222221      22567788888999999999985543

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.65  E-value=0.00013  Score=63.12  Aligned_cols=76  Identities=17%  Similarity=0.370  Sum_probs=57.9

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP  250 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~  250 (356)
                      ++..|++.-+ .++...|||||.|||.++..+++...  +++.++. |.++....++       ...++..||++. +.|
T Consensus        46 v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P  122 (315)
T KOG0820|consen   46 VIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP  122 (315)
T ss_pred             HHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence            4567777666 88899999999999999999999654  5666654 6655544332       468999999999 778


Q ss_pred             CCcEEEec
Q 018405          251 EADTILMK  258 (356)
Q Consensus       251 ~~D~i~~~  258 (356)
                      ..|.++.+
T Consensus       123 ~fd~cVsN  130 (315)
T KOG0820|consen  123 RFDGCVSN  130 (315)
T ss_pred             ccceeecc
Confidence            77877763

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.64  E-value=0.0016  Score=59.01  Aligned_cols=97  Identities=18%  Similarity=0.197  Sum_probs=73.1

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCCC--CC-cEEEecccccCCChH
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVP--EA-DTILMKWVLSSFDDE  267 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~--~~-D~i~~~~vlh~~~~~  267 (356)
                      +.+..++|||||++|.++..++++  +.+++++|...+.......++|.+..+|.+...|  .. |.++|--+      +
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv------e  280 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV------E  280 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc------c
Confidence            357789999999999999999996  5589999976666666667899999999887333  33 99988655      3


Q ss_pred             HHHHHHHHHHHhCCCC-CEEEEEecccCC
Q 018405          268 QSLKLLKNCYKALPDG-GKLLNVNVTIPE  295 (356)
Q Consensus       268 ~~~~~L~~~~~~L~pg-G~lii~e~~~~~  295 (356)
                      ....+++-+.++|..| .+-.|...-.+.
T Consensus       281 ~P~rva~lm~~Wl~~g~cr~aIfnLKlpm  309 (357)
T PRK11760        281 KPARVAELMAQWLVNGWCREAIFNLKLPM  309 (357)
T ss_pred             CHHHHHHHHHHHHhcCcccEEEEEEEcCC
Confidence            3567778888888776 445555554443

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.61  E-value=0.00019  Score=61.11  Aligned_cols=120  Identities=19%  Similarity=0.194  Sum_probs=85.6

Q ss_pred             CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH---HHhCCC---CCCceEEEccCCC-C-CCC-CcEEEecccccC
Q 018405          194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV---IKNAPS---YLGIEHVGGDFFE-S-VPE-ADTILMKWVLSS  263 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~---~~~v~~~~~D~~~-~-~~~-~D~i~~~~vlh~  263 (356)
                      ..+++|||.|.|-.+.-++-.+|+.+++.+|. ..-   ++.+..   .++++++.+...+ . .+. .|+|++..+-  
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva--  145 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA--  145 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence            68999999999999999998999999999994 332   333322   2679999888877 2 234 6999998773  


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE  343 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  343 (356)
                          ....++.-+...+++||.++..-...                          ++. -..+.+.....-|+.+..+.
T Consensus       146 ----~L~~l~e~~~pllk~~g~~~~~k~~~--------------------------~~~-e~~e~~~a~~~~~~~~~~~~  194 (215)
T COG0357         146 ----SLNVLLELCLPLLKVGGGFLAYKGLA--------------------------GKD-ELPEAEKAILPLGGQVEKVF  194 (215)
T ss_pred             ----chHHHHHHHHHhcccCCcchhhhHHh--------------------------hhh-hHHHHHHHHHhhcCcEEEEE
Confidence                36778888889999998766521110                          100 13456667777788888877


Q ss_pred             Ecc
Q 018405          344 YGA  346 (356)
Q Consensus       344 ~~~  346 (356)
                      ...
T Consensus       195 ~~~  197 (215)
T COG0357         195 SLT  197 (215)
T ss_pred             Eee
Confidence            654

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.61  E-value=0.00018  Score=67.46  Aligned_cols=89  Identities=11%  Similarity=0.013  Sum_probs=60.7

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--C-CCCcEEEecccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--V-PEADTILMKWVL  261 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~-~~~D~i~~~~vl  261 (356)
                      +..+|||+|||+|.++..++..  ..+++++|. +..++.++.+      ++++++.+|+.+ .  . ...|+|++.--=
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr  310 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR  310 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence            4579999999999999999864  467999995 7777766543      478999999865 2  1 123988874221


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          262 SSFDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      -..    ..++++.+. .++|++.+++
T Consensus       311 ~G~----~~~~l~~l~-~~~p~~ivyv  332 (374)
T TIGR02085       311 RGI----GKELCDYLS-QMAPKFILYS  332 (374)
T ss_pred             CCC----cHHHHHHHH-hcCCCeEEEE
Confidence            111    234445554 3688877776

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.59  E-value=0.0013  Score=58.24  Aligned_cols=135  Identities=16%  Similarity=0.291  Sum_probs=88.9

Q ss_pred             CceEEEEcCCccHHHHHHHHhCCCCeEEEccc------hHHHHhCC----------------------------------
Q 018405          194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL------PYVIKNAP----------------------------------  233 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~~~a~----------------------------------  233 (356)
                      ..+||-=|||.|.++..|+...+.+++--+..      .-+++..+                                  
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p  230 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP  230 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence            46899999999999999998877666521110      00110000                                  


Q ss_pred             --C---CCCceEEEccCCC--CCCC---C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchh
Q 018405          234 --S---YLGIEHVGGDFFE--SVPE---A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSAT  302 (356)
Q Consensus       234 --~---~~~v~~~~~D~~~--~~~~---~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~  302 (356)
                        .   .+..+.-.|||.+  ..+.   . |+|+.++.+.--  ......|..+++.|+|||.++-+.+.........  
T Consensus       231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~--  306 (369)
T KOG2798|consen  231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH--  306 (369)
T ss_pred             cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEeccceeeeccCCC--
Confidence              0   0223445688887  3333   2 999887766543  4588999999999999999998887664321110  


Q ss_pred             hhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405          303 SREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE  343 (356)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  343 (356)
                             +.    ....+-+.+.+++..+.+.-||++++-.
T Consensus       307 -------g~----~~~~siEls~edl~~v~~~~GF~~~ke~  336 (369)
T KOG2798|consen  307 -------GV----ENEMSIELSLEDLKRVASHRGFEVEKER  336 (369)
T ss_pred             -------CC----cccccccccHHHHHHHHHhcCcEEEEee
Confidence                   00    0012445789999999999999988654

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.58  E-value=0.00036  Score=59.40  Aligned_cols=113  Identities=22%  Similarity=0.268  Sum_probs=79.7

Q ss_pred             EEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCC--C-CcEEEecccccCCC
Q 018405          197 LVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVP--E-ADTILMKWVLSSFD  265 (356)
Q Consensus       197 vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~--~-~D~i~~~~vlh~~~  265 (356)
                      |.||||.+|.+...|+++..--+++..|. +.-++.|+..       ++|++..+|-++..+  + .|+|+++.+--   
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG---   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG---   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence            68999999999999999888778999996 7766666542       689999999887443  3 48888887754   


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405          266 DEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       266 ~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  344 (356)
                       .-..++|.+....+++..++++.                            |+   .....++++|.+.||.+++=..
T Consensus        78 -~lI~~ILe~~~~~~~~~~~lILq----------------------------P~---~~~~~LR~~L~~~gf~I~~E~l  124 (205)
T PF04816_consen   78 -ELIIEILEAGPEKLSSAKRLILQ----------------------------PN---THAYELRRWLYENGFEIIDEDL  124 (205)
T ss_dssp             -HHHHHHHHHTGGGGTT--EEEEE----------------------------ES---S-HHHHHHHHHHTTEEEEEEEE
T ss_pred             -HHHHHHHHhhHHHhccCCeEEEe----------------------------CC---CChHHHHHHHHHCCCEEEEeEE
Confidence             55788888887776655555551                            11   1357889999999999886433

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=7.9e-05  Score=66.58  Aligned_cols=112  Identities=22%  Similarity=0.337  Sum_probs=70.4

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCe-EEEccc-hHHHHhC---CCC---CCceEEEccCCC---CCCC
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIK-GINYDL-PYVIKNA---PSY---LGIEHVGGDFFE---SVPE  251 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a---~~~---~~v~~~~~D~~~---~~~~  251 (356)
                      .+-...+++ .+.+|||||.|.|.-+-++-.-+|+++ ++.++. |..-+..   ...   ........|+..   ++|.
T Consensus       104 ~L~~~~~df-apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~  182 (484)
T COG5459         104 ELQKRVPDF-APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA  182 (484)
T ss_pred             HHHHhCCCc-CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence            333344434 346799999999999888888889986 555554 3322111   111   111222233322   4566


Q ss_pred             CcEEEecccccCCChHH----HHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405          252 ADTILMKWVLSSFDDEQ----SLKLLKNCYKALPDGGKLLNVNVTIPE  295 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~~~----~~~~L~~~~~~L~pgG~lii~e~~~~~  295 (356)
                      +|.|.+.-++|.+-.+.    ....++++...+.|||.|+|+|...+.
T Consensus       183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~  230 (484)
T COG5459         183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA  230 (484)
T ss_pred             cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence            67777776666543222    334899999999999999999976554

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.55  E-value=0.00058  Score=57.55  Aligned_cols=94  Identities=15%  Similarity=0.049  Sum_probs=59.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--C-C--C-CC-cEEEe
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--S-V--P-EA-DTILM  257 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~--~-~~-D~i~~  257 (356)
                      ...+|||++||+|.++.+++.+... +++.+|. +..++.++++       ++++++.+|.++  . .  . .. |+|++
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            4579999999999999999998653 6888885 6666555432       468899999855  1 1  1 22 66666


Q ss_pred             cccccCCChHHHHHHHHHHH--HhCCCCCEEEEEec
Q 018405          258 KWVLSSFDDEQSLKLLKNCY--KALPDGGKLLNVNV  291 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~~--~~L~pgG~lii~e~  291 (356)
                      ---...   .....++..+.  .+|+++|.+++ |.
T Consensus       128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~-E~  159 (189)
T TIGR00095       128 DPPFFN---GALQALLELCENNWILEDTVLIVV-EE  159 (189)
T ss_pred             CcCCCC---CcHHHHHHHHHHCCCCCCCeEEEE-Ee
Confidence            333221   11334444443  35777775554 54

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.55  E-value=0.00018  Score=64.55  Aligned_cols=66  Identities=21%  Similarity=0.222  Sum_probs=54.6

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC----CCceEEEccCCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE  247 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~  247 (356)
                      ...+++.+. ..+...+||++||.|.++..+++.+| +.+++++|. +.+++.+++.    ++++++.+|+.+
T Consensus         8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~   79 (296)
T PRK00050          8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN   79 (296)
T ss_pred             HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence            456777776 56778999999999999999999986 789999996 8888877643    478888888875

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.52  E-value=0.00014  Score=60.93  Aligned_cols=106  Identities=19%  Similarity=0.279  Sum_probs=64.0

Q ss_pred             HHHHHHHhcCCC--CCceEEEEcCCccHHHHHHHHhC-CCCeEEEccchHHHHhCCCCCCceEEEccCCCC---------
Q 018405          181 MEKVLESYKGFE--HVKKLVDVGGGLGATLNMIISKY-PRIKGINYDLPYVIKNAPSYLGIEHVGGDFFES---------  248 (356)
Q Consensus       181 ~~~~~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------  248 (356)
                      ..++.+.++-++  +..++||+||++|.++..++++. +..+++++|+...    ....++.++.+|+.++         
T Consensus         9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----~~~~~~~~i~~d~~~~~~~~~i~~~   84 (181)
T PF01728_consen    9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----DPLQNVSFIQGDITNPENIKDIRKL   84 (181)
T ss_dssp             HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----GS-TTEEBTTGGGEEEEHSHHGGGS
T ss_pred             HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----ccccceeeeecccchhhHHHhhhhh
Confidence            445666665233  45899999999999999999987 6788999996433    1113455555555431         


Q ss_pred             CC---CC-cEEEeccc---ccC------CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          249 VP---EA-DTILMKWV---LSS------FDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       249 ~~---~~-D~i~~~~v---lh~------~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      .+   .. |+|++-..   -.+      ..-+-+...|.-+.+.|+|||.+++--
T Consensus        85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~  139 (181)
T PF01728_consen   85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV  139 (181)
T ss_dssp             HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence            11   23 88877441   111      011224455666667799999888733

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.49  E-value=5.4e-05  Score=62.68  Aligned_cols=139  Identities=17%  Similarity=0.150  Sum_probs=80.6

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC-CCC--CcEEEecccccCCChHH
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES-VPE--ADTILMKWVLSSFDDEQ  268 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~-~~~--~D~i~~~~vlh~~~~~~  268 (356)
                      .+.++||+|+|.|..+..++..+.+  +...++ ..|..+.++. +..+  ....+. +.+  -|+|.|.++|.-.-  +
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk-~ynV--l~~~ew~~t~~k~dli~clNlLDRc~--~  184 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKK-NYNV--LTEIEWLQTDVKLDLILCLNLLDRCF--D  184 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhc-CCce--eeehhhhhcCceeehHHHHHHHHhhc--C
Confidence            4689999999999999998876654  222333 3444444322 1221  111221 112  29999999997653  4


Q ss_pred             HHHHHHHHHHhCCC-CCEEEEEecc-----cCCCCCCchhhhhhhhhhhhhhhhcCCCccC--CHHHHHHHHHHcCCcce
Q 018405          269 SLKLLKNCYKALPD-GGKLLNVNVT-----IPEVPENSATSREISILDTICLFQVPHGRER--TKQEYSELAIKAGFKGV  340 (356)
Q Consensus       269 ~~~~L~~~~~~L~p-gG~lii~e~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~~  340 (356)
                      .-++|+.++.+|+| +|++++.=..     .+.+....+.     .-| ..+ .. +|+.+  ....+.++|+.+||.+.
T Consensus       185 p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~-----rPd-n~L-e~-~Gr~~ee~v~~~~e~lr~~g~~ve  256 (288)
T KOG3987|consen  185 PFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPL-----RPD-NLL-EN-NGRSFEEEVARFMELLRNCGYRVE  256 (288)
T ss_pred             hHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcC-----Cch-HHH-Hh-cCccHHHHHHHHHHHHHhcCchhh
Confidence            78999999999999 7888773211     1111100000     000 011 11 34332  22346789999999988


Q ss_pred             eEEEcc
Q 018405          341 NYEYGA  346 (356)
Q Consensus       341 ~~~~~~  346 (356)
                      ..+..+
T Consensus       257 awTrlP  262 (288)
T KOG3987|consen  257 AWTRLP  262 (288)
T ss_pred             hhhcCC
Confidence            766553

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.47  E-value=0.0012  Score=54.28  Aligned_cols=138  Identities=21%  Similarity=0.188  Sum_probs=84.0

Q ss_pred             CCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccchHHHHhC-----------CC--CCCceEEEccCCC-CCCCC-c
Q 018405          190 GFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDLPYVIKNA-----------PS--YLGIEHVGGDFFE-SVPEA-D  253 (356)
Q Consensus       190 ~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a-----------~~--~~~v~~~~~D~~~-~~~~~-D  253 (356)
                      ++++...|+|+=.|.|.++.-++... |.-.+..+--.+....+           ++  ..+++.+..+... ..|+. |
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d  124 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD  124 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence            47889999999999999999888754 33333333211111111           11  1345555555444 33343 6


Q ss_pred             EEEecccccCC-----ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405          254 TILMKWVLSSF-----DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY  328 (356)
Q Consensus       254 ~i~~~~vlh~~-----~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~  328 (356)
                      +++....-|++     ......++.+.++++|||||.++|.|..........         +-.    . -+ .....-.
T Consensus       125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------dt~----~-~~-ri~~a~V  189 (238)
T COG4798         125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------DTI----T-LH-RIDPAVV  189 (238)
T ss_pred             ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------hhh----h-hc-ccChHHH
Confidence            66553333322     234578999999999999999999998765532211         100    0 11 1356778


Q ss_pred             HHHHHHcCCcceeE
Q 018405          329 SELAIKAGFKGVNY  342 (356)
Q Consensus       329 ~~ll~~aGf~~~~~  342 (356)
                      .+..+++||+...-
T Consensus       190 ~a~veaaGFkl~ae  203 (238)
T COG4798         190 IAEVEAAGFKLEAE  203 (238)
T ss_pred             HHHHHhhcceeeee
Confidence            88889999987643

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.35  E-value=0.0012  Score=52.78  Aligned_cols=92  Identities=15%  Similarity=0.269  Sum_probs=61.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHh----CCCCeEEEccc-hHHHHhCCCC---------CCceEEEccCCC-CCCCC-cE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISK----YPRIKGINYDL-PYVIKNAPSY---------LGIEHVGGDFFE-SVPEA-DT  254 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~~~~-D~  254 (356)
                      ..+..+|+|+|||.|.++..++..    .++++++++|. +...+.+..+         .++++..++... ..... ++
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI  102 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence            357789999999999999999982    28899999995 6665555432         345666665554 22333 78


Q ss_pred             EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      ++.-|..-+++    ..+|+...+   |+-..++.
T Consensus       103 ~vgLHaCG~Ls----~~~l~~~~~---~~~~~l~~  130 (141)
T PF13679_consen  103 LVGLHACGDLS----DRALRLFIR---PNARFLVL  130 (141)
T ss_pred             EEEeecccchH----HHHHHHHHH---cCCCEEEE
Confidence            88877766654    355555444   55555543

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=97.30  E-value=0.0045  Score=54.92  Aligned_cols=147  Identities=14%  Similarity=0.086  Sum_probs=95.4

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC---------CCCceEEEccCCCCC----------CCC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS---------YLGIEHVGGDFFESV----------PEA  252 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~----------~~~  252 (356)
                      .+...|+.+|||-=....++.. .+++++.-+|+|++++.-++         .++..++..|+...+          +..
T Consensus        80 ~g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~  158 (260)
T TIGR00027        80 AGIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA  158 (260)
T ss_pred             cCCcEEEEeCCccccHHHhcCC-CCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence            3456899999998888777743 23688999999987653321         257888999987321          112


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhh-hhhhhhhhh-hhhcCCCccCCHHHHH
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSR-EISILDTIC-LFQVPHGRERTKQEYS  329 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~t~~e~~  329 (356)
                       -++++-.++.+++.++..++|+.+.+...||+.+++ |.+.+-..  ..... ......... ....+-....+++++.
T Consensus       159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (260)
T TIGR00027       159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDG--EWRAGMRAPVYHAARGVDGSGLVFGIDRADVA  235 (260)
T ss_pred             CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-Eeccccch--hHHHHHHHHHHHhhhcccccccccCCChhhHH
Confidence             688889999999999999999999999888877765 55443111  00000 000000000 0000001124689999


Q ss_pred             HHHHHcCCcceeE
Q 018405          330 ELAIKAGFKGVNY  342 (356)
Q Consensus       330 ~ll~~aGf~~~~~  342 (356)
                      ++|++.||+....
T Consensus       236 ~~l~~~Gw~~~~~  248 (260)
T TIGR00027       236 EWLAERGWRASEH  248 (260)
T ss_pred             HHHHHCCCeeecC
Confidence            9999999998765

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.29  E-value=0.0004  Score=56.78  Aligned_cols=97  Identities=18%  Similarity=0.239  Sum_probs=73.4

Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCCcEEEecccccCCCh
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEADTILMKWVLSSFDD  266 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~D~i~~~~vlh~~~~  266 (356)
                      ..+.|+|.|+|.++.-.++.  --+++.++. |...+.+.++      .+++++.+|..+ .+..+|+|+|-..=-.+-+
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~  111 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE  111 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence            67999999999998866655  235777774 7776666654      679999999999 7866799988544333445


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          267 EQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       267 ~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      +..+.+++.+.+-|+-++.++=.+...
T Consensus       112 E~qVpV~n~vleFLr~d~tiiPq~v~~  138 (252)
T COG4076         112 EKQVPVINAVLEFLRYDPTIIPQEVRI  138 (252)
T ss_pred             ccccHHHHHHHHHhhcCCccccHHHhh
Confidence            667899999999999999887655443

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.29  E-value=0.0004  Score=54.92  Aligned_cols=79  Identities=23%  Similarity=0.229  Sum_probs=54.7

Q ss_pred             EEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChHHHHHHH
Q 018405          197 LVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQSLKLL  273 (356)
Q Consensus       197 vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L  273 (356)
                      .+-||||.=.       -+|++..+-...         ++.+.+++--.++ .+.+.  |+|.+.+++.|+.-++-...+
T Consensus         6 kv~ig~G~~r-------~npgWi~~d~ed---------~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~al   69 (185)
T COG4627           6 KVKIGAGGKR-------VNPGWIITDVED---------RPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSAL   69 (185)
T ss_pred             EEEEeccccc-------cCCCceeeehhc---------ccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHH
Confidence            5667887533       236655544321         1234444433333 45443  999999999999988999999


Q ss_pred             HHHHHhCCCCCEEEEEec
Q 018405          274 KNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       274 ~~~~~~L~pgG~lii~e~  291 (356)
                      +.|++.|||||+|-+.-+
T Consensus        70 kechr~Lrp~G~LriAvP   87 (185)
T COG4627          70 KECHRFLRPGGKLRIAVP   87 (185)
T ss_pred             HHHHHHhCcCcEEEEEcC
Confidence            999999999999988543

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.28  E-value=0.00036  Score=57.75  Aligned_cols=99  Identities=17%  Similarity=0.250  Sum_probs=62.6

Q ss_pred             CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC-------C------CCCceEEEccCCCCCCC----C---
Q 018405          194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP-------S------YLGIEHVGGDFFESVPE----A---  252 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~------~~~v~~~~~D~~~~~~~----~---  252 (356)
                      .--+.|||||-|.++..|+..||+.-+.|.++ -.+.+..+       .      ..++.+...+.+.-.|.    +   
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            35699999999999999999999999988885 44433221       1      14455555554442221    1   


Q ss_pred             cEEEecccccCCChHH-----HHHHHHHHHHhCCCCCEEEEEecc
Q 018405          253 DTILMKWVLSSFDDEQ-----SLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~-----~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      -..++.--=|.+....     ...++.+..-+|++||.++.+.-+
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv  185 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV  185 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence            2222222223321111     346788888899999999987644

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.28  E-value=0.0037  Score=52.40  Aligned_cols=102  Identities=19%  Similarity=0.236  Sum_probs=76.7

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-----CCceEEEc---cCCCCCCCC--cEEEecccc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-----LGIEHVGG---DFFESVPEA--DTILMKWVL  261 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-----~~v~~~~~---D~~~~~~~~--D~i~~~~vl  261 (356)
                      .+.+|||.||-|-|.....+.++-|..+.++---|.+.+..+..     .+|....|   |.....|+.  |-|+.--.-
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~  179 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS  179 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence            57899999999999999999888888777665568888776543     56777666   333345543  877764443


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405          262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE  295 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~  295 (356)
                      .+.  ++...+.+.+.++|||+|.+-.+....-+
T Consensus       180 e~y--Edl~~~hqh~~rLLkP~gv~SyfNg~~~~  211 (271)
T KOG1709|consen  180 ELY--EDLRHFHQHVVRLLKPEGVFSYFNGLGAD  211 (271)
T ss_pred             hHH--HHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence            434  77999999999999999999887765543

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.24  E-value=0.00088  Score=62.75  Aligned_cols=90  Identities=12%  Similarity=0.021  Sum_probs=67.6

Q ss_pred             CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC---CCCCcEEEecccccC
Q 018405          194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES---VPEADTILMKWVLSS  263 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~~~~D~i~~~~vlh~  263 (356)
                      ..+|||++||+|..+..++...+..+++++|. +..++.++++      +++++..+|....   ....|+|++--.   
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~---  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF---  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence            46899999999999999998877567999996 7777766543      3466888887652   123499988431   


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                       .  ....+|..+.+.++|||.+++.
T Consensus       135 -G--s~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 -G--SPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             -C--CcHHHHHHHHHHhcCCCEEEEE
Confidence             1  1357788877888999999997

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.22  E-value=0.00042  Score=64.00  Aligned_cols=101  Identities=21%  Similarity=0.249  Sum_probs=78.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC--cEEEecccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA--DTILMKWVL  261 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~--D~i~~~~vl  261 (356)
                      +...++|+|||.|.....+.. +.....++++. +..+.++...       ..-.++.+|+.. ++++.  |.+.+..+.
T Consensus       110 ~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~  188 (364)
T KOG1269|consen  110 PGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV  188 (364)
T ss_pred             ccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence            455899999999999987654 55667788885 4433333221       344558889988 77765  999999999


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCC
Q 018405          262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV  296 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~  296 (356)
                      .|.++  ..+++++++++++|||.++..|.+....
T Consensus       189 ~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~~~~  221 (364)
T KOG1269|consen  189 CHAPD--LEKVYAEIYRVLKPGGLFIVKEWIKTAK  221 (364)
T ss_pred             ccCCc--HHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence            99966  7999999999999999999999876543

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.20  E-value=0.0019  Score=57.55  Aligned_cols=98  Identities=15%  Similarity=0.297  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhC----CCCCCceEEEccCCC-CCCC
Q 018405          178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNA----PSYLGIEHVGGDFFE-SVPE  251 (356)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~-~~~~  251 (356)
                      ...+..+++.+. ..+...|||||+|.|.++..|++..  .++++++. +..++..    ...++++++.+|+.+ +.+.
T Consensus        16 ~~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~   92 (262)
T PF00398_consen   16 PNIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYD   92 (262)
T ss_dssp             HHHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGG
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHH
Confidence            344567788776 7788999999999999999999988  45555553 4443333    235789999999998 5544


Q ss_pred             ----CcEEEecccccCCChHHHHHHHHHHHHhCCC
Q 018405          252 ----ADTILMKWVLSSFDDEQSLKLLKNCYKALPD  282 (356)
Q Consensus       252 ----~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~p  282 (356)
                          ..+.+..+.=++.    ...++.++...-+.
T Consensus        93 ~~~~~~~~vv~NlPy~i----s~~il~~ll~~~~~  123 (262)
T PF00398_consen   93 LLKNQPLLVVGNLPYNI----SSPILRKLLELYRF  123 (262)
T ss_dssp             HCSSSEEEEEEEETGTG----HHHHHHHHHHHGGG
T ss_pred             hhcCCceEEEEEecccc----hHHHHHHHhhcccc
Confidence                3344444444444    35666666664444

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.15  E-value=0.012  Score=49.78  Aligned_cols=116  Identities=15%  Similarity=0.133  Sum_probs=83.0

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-------CCCceEEEccCCCCC-CC-C-cEEEecccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-------YLGIEHVGGDFFESV-PE-A-DTILMKWVL  261 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~-~~-~-D~i~~~~vl  261 (356)
                      ...++.||||-+|.+.+.+++.++...++..|. +.-.+.|.+       .++++...+|.+.+. ++ . |+|+.+.+-
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG   95 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG   95 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence            445699999999999999999999999999995 555544432       268888999988743 33 2 999887765


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405          262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVN  341 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~  341 (356)
                      -    .-...+|.+-.+-|+.=-++++.                            |+.   ...+++++|.+.+|.+..
T Consensus        96 G----~lI~~ILee~~~~l~~~~rlILQ----------------------------Pn~---~~~~LR~~L~~~~~~I~~  140 (226)
T COG2384          96 G----TLIREILEEGKEKLKGVERLILQ----------------------------PNI---HTYELREWLSANSYEIKA  140 (226)
T ss_pred             H----HHHHHHHHHhhhhhcCcceEEEC----------------------------CCC---CHHHHHHHHHhCCceeee
Confidence            4    44778888877777633344441                            122   256778888888888765


Q ss_pred             EE
Q 018405          342 YE  343 (356)
Q Consensus       342 ~~  343 (356)
                      =.
T Consensus       141 E~  142 (226)
T COG2384         141 ET  142 (226)
T ss_pred             ee
Confidence            33

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.12  E-value=0.0022  Score=57.98  Aligned_cols=94  Identities=21%  Similarity=0.378  Sum_probs=70.7

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC-------------CCceEEEccCCCC-CC--CC-
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY-------------LGIEHVGGDFFES-VP--EA-  252 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~~-~~--~~-  252 (356)
                      ++..++|-+|||.|-.++++++ +|+. +++.+|+ |.+++.++..             +|++++..|.++. ..  +. 
T Consensus       288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f  366 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF  366 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence            4668999999999999999886 6854 6888886 9999988732             7899999998873 22  22 


Q ss_pred             cEEEecccccCCChHH--------HHHHHHHHHHhCCCCCEEEEEec
Q 018405          253 DTILMKWVLSSFDDEQ--------SLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~--------~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      |+|+.     +++|++        ...+-.-+++.|+++|.+++.-.
T Consensus       367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag  408 (508)
T COG4262         367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG  408 (508)
T ss_pred             cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence            77765     333332        34667778899999999998543

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.10  E-value=0.0045  Score=59.48  Aligned_cols=102  Identities=18%  Similarity=0.222  Sum_probs=69.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC------CCceEEEccCCC---CCCCC-cEEE--
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE---SVPEA-DTIL--  256 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~~~~-D~i~--  256 (356)
                      ..++.+|||+++|.|.=+..++....+ -.++..|. +.-++..+++      .++.+...|...   ..+.. |.|+  
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD  190 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD  190 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence            467789999999999999999998754 46788885 5444433321      456777777654   23333 8887  


Q ss_pred             --ecc--cc-------cCCChHHH-------HHHHHHHHHhCCCCCEEEEEecc
Q 018405          257 --MKW--VL-------SSFDDEQS-------LKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       257 --~~~--vl-------h~~~~~~~-------~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                        |+.  ++       ..|+.++.       .++|.++.+.|+|||+|+-....
T Consensus       191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence              332  22       23333332       68999999999999998665443

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.06  E-value=0.0053  Score=49.40  Aligned_cols=95  Identities=20%  Similarity=0.329  Sum_probs=63.6

Q ss_pred             EEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC---CC---ceEEEccCCC---CCCC--C-cEEEeccccc
Q 018405          197 LVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY---LG---IEHVGGDFFE---SVPE--A-DTILMKWVLS  262 (356)
Q Consensus       197 vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~~---v~~~~~D~~~---~~~~--~-D~i~~~~vlh  262 (356)
                      ++|+|||+|... .+....+. ..++++|. +.++..+...   ..   +.+..+|...   ++..  . |++ +....+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~  129 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL  129 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence            999999999976 33333333 46777885 5555543221   11   5777777654   4443  3 999 555554


Q ss_pred             CCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405          263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE  295 (356)
Q Consensus       263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~  295 (356)
                      ++.+  ....++++.+.++|+|.+++.......
T Consensus       130 ~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         130 HLLP--PAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             hcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            4433  689999999999999999998776543

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=97.02  E-value=0.00036  Score=45.36  Aligned_cols=45  Identities=24%  Similarity=0.448  Sum_probs=37.6

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +.|++.|.+.+  ++.|+.|||+++|++      .. -+.|+|..|+..|++.+
T Consensus         6 l~iL~~l~~~~--~~~t~~eia~~~gl~------~s-tv~r~L~tL~~~g~v~~   50 (52)
T PF09339_consen    6 LRILEALAESG--GPLTLSEIARALGLP------KS-TVHRLLQTLVEEGYVER   50 (52)
T ss_dssp             HHHHHCHHCTB--SCEEHHHHHHHHTS-------HH-HHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHcCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCcCeec
Confidence            45677887764  578999999999997      66 89999999999999994

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=96.89  E-value=0.0021  Score=44.27  Aligned_cols=60  Identities=17%  Similarity=0.229  Sum_probs=46.9

Q ss_pred             HHhcCchhHHHhCCCCC-CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           33 VVELDVFEIISKAGAGA-KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        33 a~~lglf~~L~~~~~~~-~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      ..+-.|++.|.+.|  + +.|+.|||+++|++      .. .++|.|..|...|+|..+.. .++.|+++.
T Consensus         6 ~~~~~IL~~L~~~g--~~~~ta~eLa~~lgl~------~~-~v~r~L~~L~~~G~V~~~~~-~~~~W~i~~   66 (68)
T smart00550        6 SLEEKILEFLENSG--DETSTALQLAKNLGLP------KK-EVNRVLYSLEKKGKVCKQGG-TPPLWKLTD   66 (68)
T ss_pred             HHHHHHHHHHHHCC--CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEecCC-CCCceEeec
Confidence            34556788888863  2 29999999999997      67 89999999999999996432 237787754

Helix-turn-helix-containing domain. Also known as Zab.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=96.89  E-value=0.00055  Score=57.95  Aligned_cols=90  Identities=26%  Similarity=0.327  Sum_probs=62.3

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC--CcEEEeccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE--ADTILMKWV  260 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~v  260 (356)
                      ..+...|+|.-||.|.++..+++..+...++.+|+ |..++..++.       +++....+|..+-.+.  +|-|++...
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp  178 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP  178 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence            34778999999999999999999777788999996 7766554432       6688999998873223  288877543


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEE
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKL  286 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~l  286 (356)
                            +....+|..+.+.+++||.+
T Consensus       179 ------~~~~~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  179 ------ESSLEFLDAALSLLKEGGII  198 (200)
T ss_dssp             ------SSGGGGHHHHHHHEEEEEEE
T ss_pred             ------HHHHHHHHHHHHHhcCCcEE
Confidence                  22457888888999988865

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=96.86  E-value=0.0022  Score=53.54  Aligned_cols=101  Identities=18%  Similarity=0.174  Sum_probs=64.8

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCe---------EEEccc-hHHHHhCCCC-------CCceEEEc
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIK---------GINYDL-PYVIKNAPSY-------LGIEHVGG  243 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~~-------~~v~~~~~  243 (356)
                      +..++.... +++...|+|-=||+|.+.++-+...++..         +++.|. +.+++.++.+       ..+.+...
T Consensus        17 A~~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~   95 (179)
T PF01170_consen   17 AAALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW   95 (179)
T ss_dssp             HHHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE-
T ss_pred             HHHHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec
Confidence            344555444 77888999999999999998877666666         889995 7777766543       45789999


Q ss_pred             cCCC-CCCC-C-cEEEecccccC-CCh-HH----HHHHHHHHHHhCCC
Q 018405          244 DFFE-SVPE-A-DTILMKWVLSS-FDD-EQ----SLKLLKNCYKALPD  282 (356)
Q Consensus       244 D~~~-~~~~-~-D~i~~~~vlh~-~~~-~~----~~~~L~~~~~~L~p  282 (356)
                      |+.+ +.+. . |+|++.--.-. ... .+    -.++++.+.+.++|
T Consensus        96 D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen   96 DARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             -GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred             chhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence            9998 6443 3 99988543332 121 11    24667888888988

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.82  E-value=0.00068  Score=54.08  Aligned_cols=97  Identities=21%  Similarity=0.180  Sum_probs=66.2

Q ss_pred             CCceEEEEcCC-ccHHHHHHHHhCCCCeEEEcc-chHHHHhCCCC---------CCceEEEccCCCC---CCC--CcEEE
Q 018405          193 HVKKLVDVGGG-LGATLNMIISKYPRIKGINYD-LPYVIKNAPSY---------LGIEHVGGDFFES---VPE--ADTIL  256 (356)
Q Consensus       193 ~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D-~~~~~~~a~~~---------~~v~~~~~D~~~~---~~~--~D~i~  256 (356)
                      ...+||++|+| +|..+..++...|...+...| ....++..++.         .++.....+....   ..+  .|+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            34789999999 566666677777888888888 45555443321         2343444343331   122  29999


Q ss_pred             ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      ++..+..  ++....+.+.+...|+|.|+-++..+
T Consensus       109 aADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsP  141 (201)
T KOG3201|consen  109 AADCLFF--DEHHESLVDTIKSLLRPSGRALLFSP  141 (201)
T ss_pred             eccchhH--HHHHHHHHHHHHHHhCcccceeEecC
Confidence            9998864  36678899999999999998666444

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.79  E-value=0.029  Score=48.09  Aligned_cols=151  Identities=17%  Similarity=0.168  Sum_probs=91.5

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc--hHHHHhCCCCCCceEEEc-cCCC----CCCCC-
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL--PYVIKNAPSYLGIEHVGG-DFFE----SVPEA-  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~-D~~~----~~~~~-  252 (356)
                      ....++.+.-..++..+||||+.||.++.-++++-. .++.++|.  .+.....+..+||...+. |+..    .+.+. 
T Consensus        67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~  145 (245)
T COG1189          67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP  145 (245)
T ss_pred             HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence            345555565234678999999999999999988633 25666773  444445555577665543 4443    12222 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE-EecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN-VNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL  331 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  331 (356)
                      |++++--.+-     ....+|-.+...++|++.++. +-+-....+..  ...-....+       +.....-..++.++
T Consensus       146 d~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~--v~kkGvv~d-------~~~~~~v~~~i~~~  211 (245)
T COG1189         146 DLIVIDVSFI-----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQ--VGKKGVVRD-------PKLHAEVLSKIENF  211 (245)
T ss_pred             CeEEEEeehh-----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhh--cCcCceecC-------cchHHHHHHHHHHH
Confidence            8888754432     258999999999999986655 33322221100  000000111       11222346788899


Q ss_pred             HHHcCCcceeEEEcc
Q 018405          332 AIKAGFKGVNYEYGA  346 (356)
Q Consensus       332 l~~aGf~~~~~~~~~  346 (356)
                      +++.||++..+.+.+
T Consensus       212 ~~~~g~~~~gl~~Sp  226 (245)
T COG1189         212 AKELGFQVKGLIKSP  226 (245)
T ss_pred             HhhcCcEEeeeEccC
Confidence            999999999988765

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=96.75  E-value=0.0059  Score=51.88  Aligned_cols=140  Identities=16%  Similarity=0.084  Sum_probs=88.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-h----HHHHhCCCCCCceEEEccCCCCCC-----CC-cEEEec
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-P----YVIKNAPSYLGIEHVGGDFFESVP-----EA-DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~----~~~~~a~~~~~v~~~~~D~~~~~~-----~~-D~i~~~  258 (356)
                      +++..+||-+|..+|....+++.-.. +-.+.+++. |    +.+..|++++||--+..|...|..     +. |+|++-
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D  150 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD  150 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence            77889999999999999999998554 666767764 4    457777888999999999987521     23 887763


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK  338 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  338 (356)
                      -. +  + ++..-+..++...||+||.+++.=-..              ..|.     + ....-.-.+-.+-|++.||+
T Consensus       151 Va-Q--p-~Qa~I~~~Na~~fLk~gG~~~i~iKa~--------------siD~-----t-~~p~~vf~~e~~~L~~~~~~  206 (229)
T PF01269_consen  151 VA-Q--P-DQARIAALNARHFLKPGGHLIISIKAR--------------SIDS-----T-ADPEEVFAEEVKKLKEEGFK  206 (229)
T ss_dssp             -S-S--T-THHHHHHHHHHHHEEEEEEEEEEEEHH--------------HH-S-----S-SSHHHHHHHHHHHHHCTTCE
T ss_pred             CC-C--h-HHHHHHHHHHHhhccCCcEEEEEEecC--------------cccC-----c-CCHHHHHHHHHHHHHHcCCC
Confidence            22 2  2 457888889999999999988842110              1110     0 00000112234566888999


Q ss_pred             ceeEEEccC---ceeEEEE
Q 018405          339 GVNYEYGAC---NLYVMEF  354 (356)
Q Consensus       339 ~~~~~~~~~---~~~vi~~  354 (356)
                      +.+.+.+.+   .+.++.+
T Consensus       207 ~~e~i~LePy~~dH~~vv~  225 (229)
T PF01269_consen  207 PLEQITLEPYERDHAMVVG  225 (229)
T ss_dssp             EEEEEE-TTTSTTEEEEEE
T ss_pred             hheEeccCCCCCCcEEEEE
Confidence            998877643   3444443

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.74  E-value=0.0093  Score=50.35  Aligned_cols=99  Identities=17%  Similarity=0.173  Sum_probs=57.6

Q ss_pred             CCceEEEEcCCccHHHHHHH---HhC-CCCeEEEccc--hHHHHhCCCC----CCceEEEccCCCC----C------CCC
Q 018405          193 HVKKLVDVGGGLGATLNMII---SKY-PRIKGINYDL--PYVIKNAPSY----LGIEHVGGDFFES----V------PEA  252 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~---~~~-p~~~~~~~D~--~~~~~~a~~~----~~v~~~~~D~~~~----~------~~~  252 (356)
                      ++..|+|+|.-.|+.+..++   +.+ ++.+++++|+  ...-..+.+.    +||++++||..++    .      +..
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~  111 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH  111 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence            47899999998887776554   444 7788999985  3333333333    7999999998763    1      111


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      -++++-..-|.+  +.+.+.|+.....++||++++|-|...
T Consensus       112 ~vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~  150 (206)
T PF04989_consen  112 PVLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTII  150 (206)
T ss_dssp             SEEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred             ceEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEeccc
Confidence            345555555555  448999999999999999999977654

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=96.74  E-value=0.0028  Score=46.36  Aligned_cols=58  Identities=19%  Similarity=0.271  Sum_probs=46.1

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      +.|++.|...+  ++.|+.|||+.+|++      .. -+.|.|+.|+..|++..+.  .++.|++++..
T Consensus         8 ~~Il~~l~~~~--~~~t~~~ia~~l~i~------~~-tv~r~l~~L~~~g~l~~~~--~~~~y~l~~~~   65 (91)
T smart00346        8 LAVLRALAEEP--GGLTLAELAERLGLS------KS-TAHRLLNTLQELGYVEQDG--QNGRYRLGPKV   65 (91)
T ss_pred             HHHHHHHHhCC--CCcCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCeeecC--CCCceeecHHH
Confidence            45677777642  489999999999997      66 8999999999999999532  24788887643

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.73  E-value=0.089  Score=49.08  Aligned_cols=102  Identities=21%  Similarity=0.277  Sum_probs=64.3

Q ss_pred             CCceEEEEcCCccHHHHHHH--------Hh-------CCCCeEEEccchH-----HHHhC---CC------------CCC
Q 018405          193 HVKKLVDVGGGLGATLNMII--------SK-------YPRIKGINYDLPY-----VIKNA---PS------------YLG  237 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~-----~~~~a---~~------------~~~  237 (356)
                      +..+|+|+|||+|..+..+.        ++       .|+..+..-|+|.     .....   ++            ..+
T Consensus        63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~  142 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR  142 (386)
T ss_pred             cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence            46799999999997664432        22       2567787778763     11111   00            011


Q ss_pred             ---ceEEEccCCC-CCCCC--cEEEecccccCCCh--H----------------------------------HHHHHHHH
Q 018405          238 ---IEHVGGDFFE-SVPEA--DTILMKWVLSSFDD--E----------------------------------QSLKLLKN  275 (356)
Q Consensus       238 ---v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~--~----------------------------------~~~~~L~~  275 (356)
                         +.-+.|.|.. -+|..  ++++++..||.++.  +                                  |...+|+.
T Consensus       143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~  222 (386)
T PLN02668        143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA  222 (386)
T ss_pred             ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence               2234577777 67876  99999999997652  0                                  12234444


Q ss_pred             HHHhCCCCCEEEEEecccC
Q 018405          276 CYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       276 ~~~~L~pgG~lii~e~~~~  294 (356)
                      =.+=|.|||++++.-...+
T Consensus       223 Ra~ELvpGG~mvl~~~Gr~  241 (386)
T PLN02668        223 RAQEMKRGGAMFLVCLGRT  241 (386)
T ss_pred             HHHHhccCcEEEEEEecCC
Confidence            5567899999999766554

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.71  E-value=0.013  Score=49.82  Aligned_cols=100  Identities=16%  Similarity=0.186  Sum_probs=72.5

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhC-------CCCCCceEEEccCCCCC--------CCC-
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNA-------PSYLGIEHVGGDFFESV--------PEA-  252 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a-------~~~~~v~~~~~D~~~~~--------~~~-  252 (356)
                      +-+++++||||.=||..+..++.+.|. -+++.+|. +...+.+       .-...|++++++..+..        ++. 
T Consensus        71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf  150 (237)
T KOG1663|consen   71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF  150 (237)
T ss_pred             HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence            346899999999999999999999986 46788885 4444333       33367899998876521        122 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE  295 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~  295 (356)
                      |.++.    .+|.+ .....+.++.+++++||.|++-....+.
T Consensus       151 DfaFv----DadK~-nY~~y~e~~l~Llr~GGvi~~DNvl~~G  188 (237)
T KOG1663|consen  151 DFAFV----DADKD-NYSNYYERLLRLLRVGGVIVVDNVLWPG  188 (237)
T ss_pred             eEEEE----ccchH-HHHHHHHHHHhhcccccEEEEeccccCC
Confidence            88775    34543 3569999999999999998886555543

>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional

Probab=96.65  E-value=0.0034  Score=48.16  Aligned_cols=67  Identities=16%  Similarity=0.197  Sum_probs=52.4

Q ss_pred             HHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           26 LPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        26 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      ...+|.--.++.|+..|.+.   ++.++.||++.++++      +. .+.+.|+.|...|+++.+.+...-.|++++
T Consensus         9 ~fkaLadptRl~IL~~L~~~---~~~~v~ela~~l~ls------qs-tvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~   75 (117)
T PRK10141          9 LFKILSDETRLGIVLLLRES---GELCVCDLCTALDQS------QP-KISRHLALLRESGLLLDRKQGKWVHYRLSP   75 (117)
T ss_pred             HHHHhCCHHHHHHHHHHHHc---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEEEEEcCEEEEEECc
Confidence            34566666888899999764   589999999999997      77 899999999999999976432223466654

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.61  E-value=0.016  Score=47.57  Aligned_cols=104  Identities=16%  Similarity=0.203  Sum_probs=64.4

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccchHHHHhCCCCCCceEEEc-cCCCC---------CCC
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDLPYVIKNAPSYLGIEHVGG-DFFES---------VPE  251 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~-D~~~~---------~~~  251 (356)
                      ++-+++.-+++..+|||+||..|.++.-..++. |+-.+.++|+-.+..    ..++.++.+ |+.+|         .|.
T Consensus        59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCC
Confidence            334444446788999999999999998887766 998999999643221    134555555 55543         232


Q ss_pred             C--cEEEecccccCC----------ChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          252 A--DTILMKWVLSSF----------DDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       252 ~--D~i~~~~vlh~~----------~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      -  |+|++- +.++-          .-+-|..+|.-....+.|+|.++.--+
T Consensus       135 r~VdvVlSD-MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w  185 (232)
T KOG4589|consen  135 RPVDVVLSD-MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW  185 (232)
T ss_pred             CcccEEEec-cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence            2  666542 22211          122355566666667788888777433

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.58  E-value=0.0054  Score=48.15  Aligned_cols=67  Identities=21%  Similarity=0.288  Sum_probs=48.0

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCC-C--cEEEecccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPE-A--DTILMKWVL  261 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~-~--D~i~~~~vl  261 (356)
                      .+..++|+|||.|-+...  -..|+. .++|+|+ |..++.+.++     -++++.+.|+.++.+. +  |..++.--+
T Consensus        48 Egkkl~DLgcgcGmLs~a--~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF  124 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIA--FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF  124 (185)
T ss_pred             cCcchhhhcCchhhhHHH--hhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence            568999999999999843  334544 5899997 9999988765     2467788888774443 2  766665443

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.47  E-value=0.024  Score=46.98  Aligned_cols=104  Identities=16%  Similarity=0.178  Sum_probs=65.6

Q ss_pred             hcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCCCcEEEecccc
Q 018405          188 YKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPEADTILMKWVL  261 (356)
Q Consensus       188 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~D~i~~~~vl  261 (356)
                      -++.-..++|||+|.|+|..++.-++... ..++..|. |......+-+     -.|.++..|..-+.+..|+|+...++
T Consensus        74 ~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlf  152 (218)
T COG3897          74 HPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLF  152 (218)
T ss_pred             CccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeecee
Confidence            34355679999999999998887665432 23444554 4444433322     23566677766533344999999999


Q ss_pred             cCCChHHHHHHHHHHHHhCC-CCCEEEEEecccCC
Q 018405          262 SSFDDEQSLKLLKNCYKALP-DGGKLLNVNVTIPE  295 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~-pgG~lii~e~~~~~  295 (356)
                      ++.+  ...+++. +...++ .|-.+++-++-.+.
T Consensus       153 y~~~--~a~~l~~-~~~~l~~~g~~vlvgdp~R~~  184 (218)
T COG3897         153 YNHT--EADRLIP-WKDRLAEAGAAVLVGDPGRAY  184 (218)
T ss_pred             cCch--HHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence            9864  3667777 555555 45566665655443

>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A

Probab=96.46  E-value=0.0044  Score=44.21  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=47.2

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC----cceecchhch
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ----RLYSLASVAK  105 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~----~~y~~t~~~~  105 (356)
                      ++++|...|...   +..+..+|.+.+|++      .. .+.+.|+.|...|+++......+    -.|++|+.|+
T Consensus         1 vRl~Il~~L~~~---~~~~f~~L~~~l~lt------~g-~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr   66 (80)
T PF13601_consen    1 VRLAILALLYAN---EEATFSELKEELGLT------DG-NLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR   66 (80)
T ss_dssp             HHHHHHHHHHHH---SEEEHHHHHHHTT--------HH-HHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred             CHHHHHHHHhhc---CCCCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence            356777788774   489999999999997      77 99999999999999997533221    2599999987

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.42  E-value=0.02  Score=51.69  Aligned_cols=146  Identities=16%  Similarity=0.099  Sum_probs=96.3

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCC-CCeEEEccchHHHHhCCCC---------CCceEEEccCCC-CCCC----------
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYP-RIKGINYDLPYVIKNAPSY---------LGIEHVGGDFFE-SVPE----------  251 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~---------~~v~~~~~D~~~-~~~~----------  251 (356)
                      +...|+-+|||-=.-+.++-.  | ++++.-+|.|++++.-++.         .+++++..|+++ ++++          
T Consensus        92 g~~qvViLgaGLDTRayRl~~--~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          92 GIRQVVILGAGLDTRAYRLDW--PKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             cccEEEEeccccccceeecCC--CCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            368999999997766655543  4 5888999999987754332         278999999995 5432          


Q ss_pred             C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCC---chhhhhhhhhhhhhhhhcCCCccCCHHH
Q 018405          252 A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN---SATSREISILDTICLFQVPHGRERTKQE  327 (356)
Q Consensus       252 ~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~e  327 (356)
                      . -++++-.++-+++.+...++|+.|...+.||..++............   ..........+....-  .........+
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~e  247 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGE--LVYFGDDPAE  247 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccccccc--ceeccCCHHH
Confidence            1 68899999999999999999999999999998887754311111000   0000000000000000  0011235789


Q ss_pred             HHHHHHHcCCcceeE
Q 018405          328 YSELAIKAGFKGVNY  342 (356)
Q Consensus       328 ~~~ll~~aGf~~~~~  342 (356)
                      +..++.+.||.....
T Consensus       248 ~~~~l~~~g~~~~~~  262 (297)
T COG3315         248 IETWLAERGWRSTLN  262 (297)
T ss_pred             HHHHHHhcCEEEEec
Confidence            999999999988766

>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities

Probab=96.42  E-value=0.0027  Score=40.19  Aligned_cols=43  Identities=19%  Similarity=0.389  Sum_probs=37.2

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      ++.|...|.+    |+.++.||++.+|++      +. .+.+.|+.|...|+++
T Consensus         4 R~~Il~~L~~----~~~~~~el~~~l~~s------~~-~vs~hL~~L~~~glV~   46 (47)
T PF01022_consen    4 RLRILKLLSE----GPLTVSELAEELGLS------QS-TVSHHLKKLREAGLVE   46 (47)
T ss_dssp             HHHHHHHHTT----SSEEHHHHHHHHTS-------HH-HHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHh----CCCchhhHHHhcccc------ch-HHHHHHHHHHHCcCee
Confidence            4567778877    599999999999997      77 8999999999999987

One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....

>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A

Probab=96.42  E-value=0.0063  Score=41.75  Aligned_cols=49  Identities=8%  Similarity=0.233  Sum_probs=36.3

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhc
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVA  104 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~  104 (356)
                      ++.|..+|++.++++      .. .+.+.++.|...|+|+......+   ..|++|+.|
T Consensus        17 ~~~t~~~l~~~~~~~------~~-~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G   68 (68)
T PF13463_consen   17 GPMTQSDLAERLGIS------KS-TVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG   68 (68)
T ss_dssp             S-BEHHHHHHHTT--------HH-HHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred             CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence            599999999999997      67 89999999999999976433222   358888764

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=96.39  E-value=0.0052  Score=57.14  Aligned_cols=51  Identities=10%  Similarity=0.078  Sum_probs=41.2

Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE  247 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~  247 (356)
                      .+|||++||+|.++..+++...  +++++|. +.+++.++++      ++++++.+|..+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            4799999999999999888763  7999995 7787777653      468888888765

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.39  E-value=0.013  Score=52.10  Aligned_cols=96  Identities=17%  Similarity=0.267  Sum_probs=57.1

Q ss_pred             CCceEEEEcCCccHHHHH-HHHh-CCCCeEEEccc-hHHHHhCCC--------CCCceEEEccCCC-CC--CCCcEEEec
Q 018405          193 HVKKLVDVGGGLGATLNM-IISK-YPRIKGINYDL-PYVIKNAPS--------YLGIEHVGGDFFE-SV--PEADTILMK  258 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~-l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~~--~~~D~i~~~  258 (356)
                      .+.+|+=||||.=-++.- +++. .++..++++|. |...+.+++        ..+++|+.+|..+ ..  .+.|+|++.
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence            357999999997665544 4443 46788999996 777666643        2679999999876 32  233988887


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      .... ++.++..++|.++.+.|+||.++++-
T Consensus       200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence            6654 33456899999999999999988884

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A

Probab=96.31  E-value=0.0065  Score=43.00  Aligned_cols=49  Identities=20%  Similarity=0.243  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      ++.+..+|+..++++      .. .+.+.|+.|...|++.   . +++.|.+|+.|..+.
T Consensus        18 ~~~~~t~i~~~~~L~------~~-~~~~yL~~L~~~gLI~---~-~~~~Y~lTekG~~~l   66 (77)
T PF14947_consen   18 GGAKKTEIMYKANLN------YS-TLKKYLKELEEKGLIK---K-KDGKYRLTEKGKEFL   66 (77)
T ss_dssp             T-B-HHHHHTTST--------HH-HHHHHHHHHHHTTSEE---E-ETTEEEE-HHHHHHH
T ss_pred             CCCCHHHHHHHhCcC------HH-HHHHHHHHHHHCcCee---C-CCCEEEECccHHHHH
Confidence            589999999999997      77 9999999999999997   3 359999999998443

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.30  E-value=0.032  Score=47.95  Aligned_cols=96  Identities=18%  Similarity=0.338  Sum_probs=73.7

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCC----CeEEEccc-hHHHHhC-----CCCCCceE--EEccCCC---CCCCC---cE
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPR----IKGINYDL-PYVIKNA-----PSYLGIEH--VGGDFFE---SVPEA---DT  254 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a-----~~~~~v~~--~~~D~~~---~~~~~---D~  254 (356)
                      +...++|+|+|+..=+..++..+.+    ++++-+|. ..+++..     +.++.+++  +++|+..   ..|..   =.
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~  157 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF  157 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence            5789999999999988888888866    78999996 4444322     23465544  5678765   23433   34


Q ss_pred             EEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      ++...+|-+++.++|..+|.+++.+|+||-.+++
T Consensus       158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll  191 (321)
T COG4301         158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL  191 (321)
T ss_pred             EEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence            5678899999999999999999999999988777

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.27  E-value=0.01  Score=54.22  Aligned_cols=100  Identities=18%  Similarity=0.235  Sum_probs=63.7

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHh-------CCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCC-C-CC--
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISK-------YPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFE-S-VP--  250 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~-~~--  250 (356)
                      ..+..+|+|-+||+|.++.++.+.       .+...+.++|. +..+..++.+        ....+..+|.+. + ..  
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~  123 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN  123 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred             ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence            556779999999999999988874       37788999996 6655544321        234588888876 3 22  


Q ss_pred             CC-cEEEecccccC--CCh-----------------HHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          251 EA-DTILMKWVLSS--FDD-----------------EQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       251 ~~-D~i~~~~vlh~--~~~-----------------~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      .. |+|++.--+-.  |.+                 ..-..++..+.+.|++||++.++-
T Consensus       124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il  183 (311)
T PF02384_consen  124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL  183 (311)
T ss_dssp             --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence            22 99987422211  111                 112358889999999999987754

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PHA00738 putative HTH transcription regulator

Probab=96.24  E-value=0.0087  Score=44.47  Aligned_cols=60  Identities=15%  Similarity=0.119  Sum_probs=47.0

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV  103 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~  103 (356)
                      .++.|++.|...   ++.++.+|++.++++      .. .+.+.|+.|...|+|..+.+...-.|++++.
T Consensus        13 tRr~IL~lL~~~---e~~~V~eLae~l~lS------Qp-tVS~HLKvLreAGLV~srK~Gr~vyY~Ln~~   72 (108)
T PHA00738         13 LRRKILELIAEN---YILSASLISHTLLLS------YT-TVLRHLKILNEQGYIELYKEGRTLYAKIREN   72 (108)
T ss_pred             HHHHHHHHHHHc---CCccHHHHHHhhCCC------HH-HHHHHHHHHHHCCceEEEEECCEEEEEECCC
Confidence            567788888874   379999999999997      66 8999999999999999764322345665543

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.088  Score=46.93  Aligned_cols=147  Identities=18%  Similarity=0.172  Sum_probs=98.6

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC--CCCeEEEccchHHHHhCCC---C-------------------------CCceE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY--PRIKGINYDLPYVIKNAPS---Y-------------------------LGIEH  240 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~---~-------------------------~~v~~  240 (356)
                      ..+...|+.+|||.-.+...+...+  +.++++-+|.|.++..--.   .                         ++...
T Consensus        85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~  164 (335)
T KOG2918|consen   85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL  164 (335)
T ss_pred             cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence            3477899999999999999999987  8889999998776443211   0                         23344


Q ss_pred             EEccCCC--CC-----C----CC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhh
Q 018405          241 VGGDFFE--SV-----P----EA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREIS  307 (356)
Q Consensus       241 ~~~D~~~--~~-----~----~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~  307 (356)
                      ...|..+  ..     +    ..  -++++--+|-+++.+....+++-+.+... .+.+++.|.+.+.++       +..
T Consensus       165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~-------Fg~  236 (335)
T KOG2918|consen  165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDR-------FGK  236 (335)
T ss_pred             eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCCh-------HHH
Confidence            4445542  00     0    11  46677778889999999999999888764 678888899986542       222


Q ss_pred             hhhhhhhhh---cCC-CccCCHHHHHHHHHHcCCcceeEEEc
Q 018405          308 ILDTICLFQ---VPH-GRERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       308 ~~~~~~~~~---~~~-~~~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                      .+--+....   .++ -...|.+..++-+.++||+.+.+..+
T Consensus       237 vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm  278 (335)
T KOG2918|consen  237 VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM  278 (335)
T ss_pred             HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence            222111110   000 12347888899999999998887664

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp

Probab=96.23  E-value=0.0071  Score=43.49  Aligned_cols=47  Identities=21%  Similarity=0.253  Sum_probs=37.4

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV  103 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~  103 (356)
                      ++.|..+||+.++++      +. .+++++..|...|+++... ..+|.|.++..
T Consensus        24 ~~~s~~eiA~~~~i~------~~-~l~kil~~L~~~Gli~s~~-G~~GGy~L~~~   70 (83)
T PF02082_consen   24 KPVSSKEIAERLGIS------PS-YLRKILQKLKKAGLIESSR-GRGGGYRLARP   70 (83)
T ss_dssp             C-BEHHHHHHHHTS-------HH-HHHHHHHHHHHTTSEEEET-STTSEEEESS-
T ss_pred             CCCCHHHHHHHHCcC------HH-HHHHHHHHHhhCCeeEecC-CCCCceeecCC
Confidence            469999999999997      88 9999999999999999642 22488888643

(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=96.21  E-value=0.0046  Score=41.56  Aligned_cols=53  Identities=11%  Similarity=0.289  Sum_probs=42.8

Q ss_pred             HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      .+|.--.++.|++.|...   +|.|+.|||+.+|++      +. .+.+.|+.|...|+|+.+
T Consensus         5 ~aL~~p~R~~Il~~L~~~---~~~t~~ela~~l~~~------~~-t~s~hL~~L~~aGli~~~   57 (61)
T PF12840_consen    5 KALSDPTRLRILRLLASN---GPMTVSELAEELGIS------QS-TVSYHLKKLEEAGLIEVE   57 (61)
T ss_dssp             HHHTSHHHHHHHHHHHHC---STBEHHHHHHHHTS-------HH-HHHHHHHHHHHTTSEEEE
T ss_pred             HHhCCHHHHHHHHHHhcC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeEEe
Confidence            344445677888888443   599999999999997      77 899999999999999954

...

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=96.18  E-value=0.0043  Score=42.72  Aligned_cols=57  Identities=16%  Similarity=0.198  Sum_probs=43.4

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      .+..++..|-..   |+.|+.|||+.+|++      .. .+.+.|+-|...|++..... ....|+..
T Consensus         9 ~E~~vy~~Ll~~---~~~t~~eIa~~l~i~------~~-~v~~~L~~L~~~GlV~~~~~-~~~~Y~a~   65 (68)
T PF01978_consen    9 NEAKVYLALLKN---GPATAEEIAEELGIS------RS-TVYRALKSLEEKGLVEREEG-RPKVYRAV   65 (68)
T ss_dssp             HHHHHHHHHHHH---CHEEHHHHHHHHTSS------HH-HHHHHHHHHHHTTSEEEEEE-CCEEEEEE
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEcC-ceEEEEEe
Confidence            344566666543   699999999999997      77 89999999999999997542 23455543

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.13  E-value=0.0034  Score=54.37  Aligned_cols=99  Identities=16%  Similarity=0.215  Sum_probs=63.4

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCCC--cEEEecccccC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPEA--DTILMKWVLSS  263 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~--D~i~~~~vlh~  263 (356)
                      +.+.+|+|||||.--++.-.....|+.+++++|+ ...++.....     .+.++...|.....|..  |+.++.-++|.
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~  183 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC  183 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence            4589999999999999998888889999999997 6665554332     56778888999854443  99999999998


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      +..+.. ..--++-+.++. -.++|..+.
T Consensus       184 le~q~~-g~g~~ll~~~~~-~~~vVSfPt  210 (251)
T PF07091_consen  184 LERQRR-GAGLELLDALRS-PHVVVSFPT  210 (251)
T ss_dssp             HHHHST-THHHHHHHHSCE-SEEEEEEES
T ss_pred             HHHHhc-chHHHHHHHhCC-CeEEEeccc
Confidence            754333 222334444442 255554443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=96.12  E-value=0.006  Score=56.93  Aligned_cols=51  Identities=10%  Similarity=0.073  Sum_probs=40.6

Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE  247 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~  247 (356)
                      .+|||++||+|.++..+++...  +++++|. +.+++.++++      ++++++.+|..+
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            5799999999999999988754  7888885 7777766543      468888888754

>COG1414 IclR Transcriptional regulator [Transcription]

Probab=96.11  E-value=0.0096  Score=52.39  Aligned_cols=58  Identities=21%  Similarity=0.359  Sum_probs=46.5

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      +.|++.|.+.+  ++.++.|||+++|++      +. -+.|+|..|+..|++..+.  .+++|++++..
T Consensus         7 l~iL~~l~~~~--~~l~l~ela~~~glp------ks-T~~RlL~tL~~~G~v~~d~--~~g~Y~Lg~~~   64 (246)
T COG1414           7 LAILDLLAEGP--GGLSLAELAERLGLP------KS-TVHRLLQTLVELGYVEQDP--EDGRYRLGPRL   64 (246)
T ss_pred             HHHHHHHHhCC--CCCCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCEEEcC--CCCcEeehHHH
Confidence            45778888743  346799999999997      66 8999999999999999542  24789998754

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.10  E-value=0.0015  Score=49.35  Aligned_cols=90  Identities=22%  Similarity=0.242  Sum_probs=39.3

Q ss_pred             EEEcCCccHHHHHHHHhCCCC---eEEEccc-h---HHHHhCCC---CCCceEEEccCCCC---CC-CC-cEEEeccccc
Q 018405          198 VDVGGGLGATLNMIISKYPRI---KGINYDL-P---YVIKNAPS---YLGIEHVGGDFFES---VP-EA-DTILMKWVLS  262 (356)
Q Consensus       198 LDiG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~~v~~~~~D~~~~---~~-~~-D~i~~~~vlh  262 (356)
                      ||||+..|..+..+++..+..   +++.+|. +   ...+..++   .++++++.+|..+.   .+ .. |++++=. -|
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH   79 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence            689999999999999877655   5788885 5   23333322   26799999998652   23 23 8887743 33


Q ss_pred             CCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          263 SFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      ..  +....-|+.+.+.|+|||.+++-|
T Consensus        80 ~~--~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   80 SY--EAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             -H--HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CH--HHHHHHHHHHHHHcCCCeEEEEeC
Confidence            33  567889999999999999888754

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.05  E-value=0.045  Score=45.69  Aligned_cols=132  Identities=17%  Similarity=0.091  Sum_probs=88.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-h----HHHHhCCCCCCceEEEccCCCCCC-----CC-cEEEecc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-P----YVIKNAPSYLGIEHVGGDFFESVP-----EA-DTILMKW  259 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~D~~~~~~-----~~-D~i~~~~  259 (356)
                      +++..+||-+|+.+|....+++.-.++-.+.+++. |    +.+..+.+++|+--+.+|...|+.     +. |+|+.- 
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D-  152 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD-  152 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe-
Confidence            77899999999999999999999887555555553 3    456777888999999999988642     23 887652 


Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcc
Q 018405          260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKG  339 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~  339 (356)
                      +-   ..++..-+..++..-|++||.+++.=-...-+...+                   -.. -..+-.+-|++.||++
T Consensus       153 VA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~d-------------------p~~-vf~~ev~kL~~~~f~i  209 (231)
T COG1889         153 VA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTAD-------------------PEE-VFKDEVEKLEEGGFEI  209 (231)
T ss_pred             cC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCC-------------------HHH-HHHHHHHHHHhcCcee
Confidence            21   224567778889999999997766422111110000                   000 1122335668889999


Q ss_pred             eeEEEcc
Q 018405          340 VNYEYGA  346 (356)
Q Consensus       340 ~~~~~~~  346 (356)
                      .+...+.
T Consensus       210 ~e~~~Le  216 (231)
T COG1889         210 LEVVDLE  216 (231)
T ss_pred             eEEeccC
Confidence            9887764

>PRK11050 manganese transport regulator MntR; Provisional

Probab=96.05  E-value=0.062  Score=43.49  Aligned_cols=87  Identities=14%  Similarity=0.193  Sum_probs=62.8

Q ss_pred             cccchHHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhh
Q 018405            4 MADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVS   83 (356)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~   83 (356)
                      .+|-..+++.+..+...-.....-..+.     -|...+...   ++.+..+||+.++++      +. .+.++++.|..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~e~~l~-----~I~~~l~~~---~~~t~~eLA~~l~is------~s-tVsr~l~~Le~   77 (152)
T PRK11050         13 LVDVEEHVEGFRQVREAHRRELIEDYVE-----LIADLIAEV---GEARQVDIAARLGVS------QP-TVAKMLKRLAR   77 (152)
T ss_pred             CCCcchhHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHhc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHH
Confidence            4566667777777766665544444443     255566654   589999999999997      77 89999999999


Q ss_pred             CCcccceeeCCCcceecchhchHhh
Q 018405           84 YNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        84 ~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      .|++...   ..+.+.+|+.|..+.
T Consensus        78 ~GlI~r~---~~~~v~LT~~G~~l~   99 (152)
T PRK11050         78 DGLVEMR---PYRGVFLTPEGEKLA   99 (152)
T ss_pred             CCCEEEe---cCCceEECchHHHHH
Confidence            9999842   235678888776544

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.04  E-value=0.008  Score=47.99  Aligned_cols=52  Identities=15%  Similarity=0.170  Sum_probs=40.3

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC
Q 018405          196 KLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE  247 (356)
Q Consensus       196 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~  247 (356)
                      .++|||||.|.++..+++.+|+.+++++|. |...+.+++.      +++.++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            389999999999999999999999999995 7776655432      346666655544

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=95.99  E-value=0.089  Score=48.49  Aligned_cols=105  Identities=20%  Similarity=0.312  Sum_probs=60.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHh--------C--------CCCeEEEccchH-----HHHhCC-------CCCC--ceE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISK--------Y--------PRIKGINYDLPY-----VIKNAP-------SYLG--IEH  240 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~--------~--------p~~~~~~~D~~~-----~~~~a~-------~~~~--v~~  240 (356)
                      .++..+|+|+||.+|..+..+...        +        |.+.++.-|+|.     ..+...       ....  +.-
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g   93 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG   93 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence            456789999999999987765432        1        345667777763     111110       0122  344


Q ss_pred             EEccCCC-CCCCC--cEEEecccccCCCh-------------------------------------HHHHHHHHHHHHhC
Q 018405          241 VGGDFFE-SVPEA--DTILMKWVLSSFDD-------------------------------------EQSLKLLKNCYKAL  280 (356)
Q Consensus       241 ~~~D~~~-~~~~~--D~i~~~~vlh~~~~-------------------------------------~~~~~~L~~~~~~L  280 (356)
                      +.+.|.. -+|..  |+++++..||.++.                                     .|...+|+.=.+=|
T Consensus        94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL  173 (334)
T PF03492_consen   94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL  173 (334)
T ss_dssp             EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            6788888 67876  99999999997652                                     11223444444568


Q ss_pred             CCCCEEEEEecccCC
Q 018405          281 PDGGKLLNVNVTIPE  295 (356)
Q Consensus       281 ~pgG~lii~e~~~~~  295 (356)
                      +|||++++.-...++
T Consensus       174 v~GG~mvl~~~gr~~  188 (334)
T PF03492_consen  174 VPGGRMVLTFLGRDE  188 (334)
T ss_dssp             EEEEEEEEEEEE-ST
T ss_pred             ccCcEEEEEEeeccc
Confidence            999999998766655

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.98  E-value=0.027  Score=55.40  Aligned_cols=66  Identities=15%  Similarity=0.168  Sum_probs=43.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCC--------CeEEEccc-hHHHHhCCCC----C--CceEEEccCCCC-------C-
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPR--------IKGINYDL-PYVIKNAPSY----L--GIEHVGGDFFES-------V-  249 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~~----~--~v~~~~~D~~~~-------~-  249 (356)
                      ...+|||.|||+|.++..++...+.        ..+.++|. +..+..++..    .  .+.+...|+...       . 
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            4579999999999999999887752        45788886 6666555321    2  345555554431       1 


Q ss_pred             CCCcEEEec
Q 018405          250 PEADTILMK  258 (356)
Q Consensus       250 ~~~D~i~~~  258 (356)
                      +..|+|+.+
T Consensus       111 ~~fD~IIgN  119 (524)
T TIGR02987       111 DLFDIVITN  119 (524)
T ss_pred             CcccEEEeC
Confidence            123998873

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=95.94  E-value=0.003  Score=51.45  Aligned_cols=61  Identities=25%  Similarity=0.425  Sum_probs=41.6

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC---CC--C-CcEEEec
Q 018405          196 KLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES---VP--E-ADTILMK  258 (356)
Q Consensus       196 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~~--~-~D~i~~~  258 (356)
                      .|+|+.||.|..+..+++.+..  ++.+|. |..++.++.+       ++|+++.+|+++.   ..  . .|+|+++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~--Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDR--VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-E--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhCCe--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            6999999999999999998764  666664 6655555432       5899999999872   11  2 3888764

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=95.93  E-value=0.057  Score=55.05  Aligned_cols=114  Identities=17%  Similarity=0.092  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHhcCC-CCCceEEEEcCCccHHHHHHHHhC----C-----------------------------------
Q 018405          177 TCVVMEKVLESYKGF-EHVKKLVDVGGGLGATLNMIISKY----P-----------------------------------  216 (356)
Q Consensus       177 ~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~----p-----------------------------------  216 (356)
                      ....+..++.... + ++...++|-.||+|.++++.+...    |                                   
T Consensus       174 ~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~  252 (702)
T PRK11783        174 KENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL  252 (702)
T ss_pred             cHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            3445666666444 6 567899999999999998876521    1                                   


Q ss_pred             ---CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC-C---CcEEEecccccC-CC-hHHHHHHHHHHHH
Q 018405          217 ---RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP-E---ADTILMKWVLSS-FD-DEQSLKLLKNCYK  278 (356)
Q Consensus       217 ---~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~---~D~i~~~~vlh~-~~-~~~~~~~L~~~~~  278 (356)
                         ..+++++|. +.+++.|+.+       +++++..+|+.+ +.+ .   .|+|+++--.-. +. .++...+.+.+-+
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~  332 (702)
T PRK11783        253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGR  332 (702)
T ss_pred             cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHH
Confidence               236899996 8888777653       458899999987 333 1   399988633211 22 2334445444444


Q ss_pred             hC---CCCCEEEEEec
Q 018405          279 AL---PDGGKLLNVNV  291 (356)
Q Consensus       279 ~L---~pgG~lii~e~  291 (356)
                      .+   .||++++++..
T Consensus       333 ~lk~~~~g~~~~llt~  348 (702)
T PRK11783        333 RLKQQFGGWNAALFSS  348 (702)
T ss_pred             HHHHhCCCCeEEEEeC
Confidence            44   38888877654

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=95.86  E-value=0.012  Score=52.52  Aligned_cols=98  Identities=21%  Similarity=0.350  Sum_probs=69.8

Q ss_pred             CceEEEEcCCccHHHHHHHHhC--------------------CCCeEEEccc---hHHHHhCCC----C-----------
Q 018405          194 VKKLVDVGGGLGATLNMIISKY--------------------PRIKGINYDL---PYVIKNAPS----Y-----------  235 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~----~-----------  235 (356)
                      ..+||-||||.|.=..+++..+                    +.+.++.+|+   ..++.....    .           
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            3699999999998776666655                    2357788886   333332210    0           


Q ss_pred             --------CCceEEEccCCC-CCC---------CCcEEEecccccCC---ChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          236 --------LGIEHVGGDFFE-SVP---------EADTILMKWVLSSF---DDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       236 --------~~v~~~~~D~~~-~~~---------~~D~i~~~~vlh~~---~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                              -+++|...|+.+ ..+         ..++|.+.++++.+   +..+..++|.++-+.++||..|+|+|.
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS  243 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS  243 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence                    147889999987 321         23888887777653   345678999999999999999999985

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=95.84  E-value=0.013  Score=37.24  Aligned_cols=44  Identities=9%  Similarity=0.312  Sum_probs=36.5

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      +..|+..|.+.   ++.|..|||+.+|++      .. .+.+.++-|...|+++
T Consensus         5 ~~~Il~~l~~~---~~~t~~ela~~~~is------~~-tv~~~l~~L~~~g~I~   48 (48)
T PF13412_consen    5 QRKILNYLREN---PRITQKELAEKLGIS------RS-TVNRYLKKLEEKGLIE   48 (48)
T ss_dssp             HHHHHHHHHHC---TTS-HHHHHHHHTS-------HH-HHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCcCcC
Confidence            45678888886   479999999999997      67 8999999999999974

...

>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family

Probab=95.69  E-value=0.042  Score=37.39  Aligned_cols=44  Identities=20%  Similarity=0.272  Sum_probs=37.2

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      ++.|..+||+.+|++      +. .+.+.|+.|...|++...   ..+.|.+++
T Consensus        24 ~~~s~~ela~~~g~s------~~-tv~r~l~~L~~~g~i~~~---~~~~~~l~~   67 (67)
T cd00092          24 LPLTRQEIADYLGLT------RE-TVSRTLKELEEEGLISRR---GRGKYRVNP   67 (67)
T ss_pred             CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEec---CCCeEEeCC
Confidence            489999999999997      77 899999999999999953   236787753

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=95.68  E-value=0.19  Score=45.82  Aligned_cols=102  Identities=16%  Similarity=0.117  Sum_probs=72.6

Q ss_pred             hcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEc-cCCC-CCCCC--cEEE
Q 018405          188 YKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGG-DFFE-SVPEA--DTIL  256 (356)
Q Consensus       188 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~-D~~~-~~~~~--D~i~  256 (356)
                      +.+..++.+|||==||||.++.+..-  -+++++|.|. ..+++-++.+      ....+... |+.. |+++.  |.|+
T Consensus       192 La~v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIa  269 (347)
T COG1041         192 LARVKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIA  269 (347)
T ss_pred             HhccccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEE
Confidence            44466788999999999999987654  6788999996 7788877654      23333444 8777 77764  8877


Q ss_pred             ec-----cc-ccCCC-hHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          257 MK-----WV-LSSFD-DEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       257 ~~-----~v-lh~~~-~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      +-     .. ..-.. ++-..++|+.+.+.|++||++++.-+
T Consensus       270 tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         270 TDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             ecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            51     11 11111 34467999999999999999998544

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=95.64  E-value=0.096  Score=47.98  Aligned_cols=96  Identities=22%  Similarity=0.197  Sum_probs=73.6

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--CC-CCCcEEEecccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--SV-PEADTILMKWVL  261 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~-~~~D~i~~~~vl  261 (356)
                      .+.+|||.=+|.|.++..+++... .+++.+|+ |..++..+++       ++++.+.||..+  +. +.+|-|++...-
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~  266 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK  266 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence            588999999999999999888543 33899996 8876665442       458899999988  33 346999987653


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405          262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE  295 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~  295 (356)
                            ...+++..+.+.+++||.+-..+...++
T Consensus       267 ------~a~~fl~~A~~~~k~~g~iHyy~~~~e~  294 (341)
T COG2520         267 ------SAHEFLPLALELLKDGGIIHYYEFVPED  294 (341)
T ss_pred             ------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence                  2467777888888899999988877654

>COG2345 Predicted transcriptional regulator [Transcription]

Probab=95.64  E-value=0.031  Score=47.60  Aligned_cols=60  Identities=18%  Similarity=0.334  Sum_probs=47.2

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-----CcceecchhchH
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-----QRLYSLASVAKY  106 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-----~~~y~~t~~~~~  106 (356)
                      .|...|.++   ||.|+.|||+++|++      +. .+++.|+.|++.|+++.....+     .-.|++|..+..
T Consensus        15 ~il~lL~~~---g~~sa~elA~~Lgis------~~-avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~   79 (218)
T COG2345          15 RILELLKKS---GPVSADELAEELGIS------PM-AVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE   79 (218)
T ss_pred             HHHHHHhcc---CCccHHHHHHHhCCC------HH-HHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence            355566665   699999999999997      77 9999999999999999763221     135888887764

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=95.63  E-value=0.064  Score=50.20  Aligned_cols=99  Identities=16%  Similarity=0.130  Sum_probs=72.1

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC--------CCceEEEccCCCCC----CC---CcEE
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY--------LGIEHVGGDFFESV----PE---ADTI  255 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~----~~---~D~i  255 (356)
                      ...+|||+=|=||.++...+.  .++ +++.+|. ...++-|+++        .++.++++|+++..    ..   .|+|
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI  294 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI  294 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence            488999999999999988777  455 7999996 6677776653        46889999998731    22   2999


Q ss_pred             Eecc------cccCCC-hHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          256 LMKW------VLSSFD-DEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       256 ~~~~------vlh~~~-~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      ++--      -=.-|+ ..+-..++..+.+.|+|||.++++....
T Consensus       295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            8611      000021 2346789999999999999999976543

>PRK11569 transcriptional repressor IclR; Provisional

Probab=95.62  E-value=0.019  Score=51.48  Aligned_cols=58  Identities=16%  Similarity=0.253  Sum_probs=45.7

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      +.|++.|.+.+  ++.|+.|||+.+|++      .. -+.|+|..|+..|++..+  ...++|++.+..
T Consensus        31 l~IL~~l~~~~--~~~~lseia~~lglp------ks-Tv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l   88 (274)
T PRK11569         31 LKLLEWIAESN--GSVALTELAQQAGLP------NS-TTHRLLTTMQQQGFVRQV--GELGHWAIGAHA   88 (274)
T ss_pred             HHHHHHHHhCC--CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEc--CCCCeEecCHHH
Confidence            45666676542  589999999999997      66 899999999999999853  224889987654

>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional

Probab=95.61  E-value=0.018  Score=51.12  Aligned_cols=58  Identities=10%  Similarity=0.244  Sum_probs=45.5

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK  105 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~  105 (356)
                      +.|++.|...   ++.|+.|||+++|++      +. -+.|+|+.|+..|++..+  ..+++|++.+...
T Consensus        17 l~IL~~l~~~---~~l~l~eia~~lgl~------ks-tv~Rll~tL~~~G~l~~~--~~~~~Y~lG~~~~   74 (257)
T PRK15090         17 FGILQALGEE---REIGITELSQRVMMS------KS-TVYRFLQTMKTLGYVAQE--GESEKYSLTLKLF   74 (257)
T ss_pred             HHHHHHhhcC---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEc--CCCCcEEecHHHH
Confidence            3455666554   479999999999997      66 899999999999999953  2348899986543

>COG1959 Predicted transcriptional regulator [Transcription]

Probab=95.57  E-value=0.021  Score=46.07  Aligned_cols=48  Identities=21%  Similarity=0.221  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      ++.|+++||+..|++      |. .|+++|..|...|+|+... ..+|.|+|....
T Consensus        24 ~~~s~~~IA~~~~is------~~-~L~kil~~L~kaGlV~S~r-G~~GGy~Lar~~   71 (150)
T COG1959          24 GPVSSAEIAERQGIS------PS-YLEKILSKLRKAGLVKSVR-GKGGGYRLARPP   71 (150)
T ss_pred             CcccHHHHHHHhCcC------HH-HHHHHHHHHHHcCCEEeec-CCCCCccCCCCh
Confidence            488999999999998      88 9999999999999999753 335889887543

>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure

Probab=95.54  E-value=0.032  Score=40.77  Aligned_cols=60  Identities=13%  Similarity=0.210  Sum_probs=45.6

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      |+..|..    |+....||.+.+ |++      +. .|.+-|+.|.+.|++++......   -.|++|+.|..+.
T Consensus        10 IL~~l~~----g~~rf~el~~~l~~is------~~-~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~   73 (90)
T PF01638_consen   10 ILRALFQ----GPMRFSELQRRLPGIS------PK-VLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL   73 (90)
T ss_dssp             HHHHHTT----SSEEHHHHHHHSTTS-------HH-HHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred             HHHHHHh----CCCcHHHHHHhcchhH------HH-HHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence            4455555    599999999999 897      77 89999999999999997533221   3599999997655

The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.

>PRK09834 DNA-binding transcriptional activator MhpR; Provisional

Probab=95.54  E-value=0.022  Score=50.67  Aligned_cols=63  Identities=14%  Similarity=0.163  Sum_probs=48.6

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      -+.|++.|...+  ++.|+.|||+.+|++      +. -+.|+|+.|+..|++.++.  .++.|++++....+.
T Consensus        13 al~iL~~l~~~~--~~ls~~eia~~lgl~------ks-tv~RlL~tL~~~g~v~~~~--~~~~Y~Lg~~~~~l~   75 (263)
T PRK09834         13 GLMVLRALNRLD--GGATVGLLAELTGLH------RT-TVRRLLETLQEEGYVRRSA--SDDSFRLTLKVRQLS   75 (263)
T ss_pred             HHHHHHHHHhcC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEec--CCCcEEEcHHHHHHH
Confidence            345667776543  469999999999997      66 8999999999999999642  247899987664433

>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family

Probab=95.50  E-value=0.021  Score=50.42  Aligned_cols=57  Identities=25%  Similarity=0.334  Sum_probs=46.0

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK  105 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~  105 (356)
                      +.|++.|...+  ++.|+.|||+.+|++      +. -+.|+|..|+..|++..   + +++|++.+...
T Consensus        12 l~IL~~l~~~~--~~~~l~eia~~lglp------ks-T~~RlL~tL~~~G~l~~---~-~~~Y~lG~~~~   68 (248)
T TIGR02431        12 LAVIEAFGAER--PRLTLTDVAEATGLT------RA-AARRFLLTLVELGYVTS---D-GRLFWLTPRVL   68 (248)
T ss_pred             HHHHHHHhcCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEe---C-CCEEEecHHHH
Confidence            45677776542  589999999999997      66 89999999999999993   3 47899987543

Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.46  E-value=0.059  Score=51.35  Aligned_cols=127  Identities=18%  Similarity=0.238  Sum_probs=81.7

Q ss_pred             hhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCC--CCceEEEEcCCccHHHHHHHHh----CCCCeEEEcc-chHH
Q 018405          156 YDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFE--HVKKLVDVGGGLGATLNMIISK----YPRIKGINYD-LPYV  228 (356)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D-~~~~  228 (356)
                      |+-+++|+-.-..|++       .....+.+..++-+  ....|.-+|+|-|-+..+.+++    ...++..+++ .|..
T Consensus       335 YetFEkD~VKY~~Yq~-------Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNA  407 (649)
T KOG0822|consen  335 YETFEKDPVKYDQYQQ-------AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNA  407 (649)
T ss_pred             hhhhhccchHHHHHHH-------HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcch
Confidence            4455666554444443       33566777666422  2568899999999887776553    2456677887 4665


Q ss_pred             HHhCCCC------CCceEEEccCCC-CCC--CCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          229 IKNAPSY------LGIEHVGGDFFE-SVP--EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       229 ~~~a~~~------~~v~~~~~D~~~-~~~--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      +-..+..      .+|+++..||.+ ..|  ++|++++-..-..-++|-..+-|.-+.+.|||+|..|=.
T Consensus       408 ivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~  477 (649)
T KOG0822|consen  408 IVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS  477 (649)
T ss_pred             hhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence            5444332      689999999998 443  349887643333223344557788888999999876543

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=95.45  E-value=0.039  Score=49.78  Aligned_cols=66  Identities=18%  Similarity=0.225  Sum_probs=52.6

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE  247 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~  247 (356)
                      ..++++.+. ..+...++|.-+|.|..+..+++.+|+.+++++|. +.+++.+++.     +|++++.+++.+
T Consensus         9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~   80 (305)
T TIGR00006         9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN   80 (305)
T ss_pred             HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            456777776 56778999999999999999999988889999996 8887776542     467777776654

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK10163 DNA-binding transcriptional repressor AllR; Provisional

Probab=95.45  E-value=0.024  Score=50.69  Aligned_cols=58  Identities=16%  Similarity=0.236  Sum_probs=45.7

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      +.|++.|.+.+  .+.|+.|||+.+|++      .. -+.|+|..|+..|+|..+.  ..++|++.+..
T Consensus        28 l~IL~~~~~~~--~~~tl~eIa~~lglp------kS-tv~RlL~tL~~~G~l~~~~--~~~~Y~lG~~l   85 (271)
T PRK10163         28 IAILQYLEKSG--GSSSVSDISLNLDLP------LS-TTFRLLKVLQAADFVYQDS--QLGWWHIGLGV   85 (271)
T ss_pred             HHHHHHHHhCC--CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEcC--CCCeEEecHHH
Confidence            45666776543  479999999999997      66 8999999999999998542  24889987644

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=95.43  E-value=0.043  Score=51.25  Aligned_cols=90  Identities=13%  Similarity=0.108  Sum_probs=67.5

Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC------CCceEEEccCCCC--C--CCCcEEEeccccc
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY------LGIEHVGGDFFES--V--PEADTILMKWVLS  262 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~--~--~~~D~i~~~~vlh  262 (356)
                      .+|||.-||+|..+.+++.+.++. +++..|. +..++.++++      .++++..+|...-  .  ...|+|.+-- . 
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f-  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F-  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence            689999999999999999986554 6888896 7777666543      3477888887752  1  1239888743 2 


Q ss_pred             CCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          263 SFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      ..    ...++..+.+.+++||.|.+.-
T Consensus       124 Gs----~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       124 GT----PAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             CC----cHHHHHHHHHhcccCCEEEEEe
Confidence            22    3578888999999999999973

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK11512 DNA-binding transcriptional repressor MarR; Provisional

Probab=95.43  E-value=0.14  Score=40.90  Aligned_cols=62  Identities=19%  Similarity=0.162  Sum_probs=46.1

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++..|...   ++.|..+||+.++++      +. .+.+.++-|+..|+|.+...++++   ...+|+.|..+.
T Consensus        44 ~vL~~l~~~---~~~t~~eLa~~l~i~------~~-tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~  108 (144)
T PRK11512         44 KVLCSIRCA---ACITPVELKKVLSVD------LG-ALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAIC  108 (144)
T ss_pred             HHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHH
Confidence            446666654   589999999999998      77 899999999999999975333332   345666665443

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=95.34  E-value=0.034  Score=42.85  Aligned_cols=48  Identities=17%  Similarity=0.272  Sum_probs=39.1

Q ss_pred             hcCchhHHH-hCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceee
Q 018405           35 ELDVFEIIS-KAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV   92 (356)
Q Consensus        35 ~lglf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~   92 (356)
                      +..+|..|- ..   ||.|+++||+.++.+      .. -+.|-|+-|...|++.++..
T Consensus        29 Dv~v~~~LL~~~---~~~tvdelae~lnr~------rS-tv~rsl~~L~~~GlV~Rek~   77 (126)
T COG3355          29 DVEVYKALLEEN---GPLTVDELAEILNRS------RS-TVYRSLQNLLEAGLVEREKV   77 (126)
T ss_pred             HHHHHHHHHhhc---CCcCHHHHHHHHCcc------HH-HHHHHHHHHHHcCCeeeeee
Confidence            345555565 44   699999999999997      66 89999999999999997654

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=95.29  E-value=0.095  Score=43.87  Aligned_cols=84  Identities=23%  Similarity=0.285  Sum_probs=61.2

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC---------CCceEEEccCCC-C---------C-CCC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY---------LGIEHVGGDFFE-S---------V-PEA  252 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------~~v~~~~~D~~~-~---------~-~~~  252 (356)
                      +...|+.+|||-=....++....++++++-+|+|.+++.-++.         .+.+++..|+.+ .         + ++.
T Consensus        78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~  157 (183)
T PF04072_consen   78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR  157 (183)
T ss_dssp             TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred             CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence            3459999999999999999988889999999999887654432         236789999986 2         1 122


Q ss_pred             -cEEEecccccCCChHHHHHHHHHH
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNC  276 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~  276 (356)
                       -++++-.++.+++.++...+|+.+
T Consensus       158 ptl~i~Egvl~Yl~~~~~~~ll~~i  182 (183)
T PF04072_consen  158 PTLFIAEGVLMYLSPEQVDALLRAI  182 (183)
T ss_dssp             EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred             CeEEEEcchhhcCCHHHHHHHHHHh
Confidence             688889999999999999998876

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR

Probab=95.28  E-value=0.036  Score=42.70  Aligned_cols=65  Identities=11%  Similarity=0.130  Sum_probs=50.4

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .+..++..|...   ++.|..+||+.++++      +. .+.+.++-|...|+|.+...+.+   -.+.+|+.|..+.
T Consensus        29 ~q~~iL~~l~~~---~~~t~~ela~~~~~~------~~-tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~   96 (118)
T TIGR02337        29 QQWRILRILAEQ---GSMEFTQLANQACIL------RP-SLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALY   96 (118)
T ss_pred             HHHHHHHHHHHc---CCcCHHHHHHHhCCC------ch-hHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHH
Confidence            444577777775   589999999999997      66 89999999999999997532222   2688898887544

This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.

>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance

Probab=95.21  E-value=0.019  Score=38.17  Aligned_cols=47  Identities=9%  Similarity=0.254  Sum_probs=38.0

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceee
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV   92 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~   92 (356)
                      +.++..|.+.   ++.|..+||+.++++      +. .+.++++-|...|++++...
T Consensus         6 ~~iL~~l~~~---~~~~~~~la~~~~~~------~~-~~t~~i~~L~~~g~I~r~~~   52 (59)
T PF01047_consen    6 FRILRILYEN---GGITQSELAEKLGIS------RS-TVTRIIKRLEKKGLIERERD   52 (59)
T ss_dssp             HHHHHHHHHH---SSEEHHHHHHHHTS-------HH-HHHHHHHHHHHTTSEEEEEE
T ss_pred             HHHHHHHHHc---CCCCHHHHHHHHCCC------hh-HHHHHHHHHHHCCCEEeccC
Confidence            3445556665   489999999999997      77 99999999999999997643

This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....

>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B

Probab=95.09  E-value=0.03  Score=37.49  Aligned_cols=49  Identities=10%  Similarity=0.259  Sum_probs=37.9

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      +..++..|...+. ...|+.|||+.++++      +. .+.+.++.|...|+|+.+.
T Consensus         7 q~~vL~~l~~~~~-~~~t~~~la~~l~~~------~~-~vs~~v~~L~~~Glv~r~~   55 (62)
T PF12802_consen    7 QFRVLMALARHPG-EELTQSELAERLGIS------KS-TVSRIVKRLEKKGLVERER   55 (62)
T ss_dssp             HHHHHHHHHHSTT-SGEEHHHHHHHHTS-------HH-HHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHCCC-CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEeC
Confidence            3445666666531 128999999999997      77 9999999999999999753

...

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=95.08  E-value=0.022  Score=47.64  Aligned_cols=96  Identities=19%  Similarity=0.111  Sum_probs=60.3

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC------CCCC-cEEEe
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES------VPEA-DTILM  257 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~------~~~~-D~i~~  257 (356)
                      ...++||+=||+|.++.+.+.+... +++.+|. +..++..+++       +++.++..|.+..      .... |+|++
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            4689999999999999998886533 6777785 5555554432       4578888886541      1233 99988


Q ss_pred             cccccCCChHHHHHHHHHHH--HhCCCCCEEEEEecc
Q 018405          258 KWVLSSFDDEQSLKLLKNCY--KALPDGGKLLNVNVT  292 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~~--~~L~pgG~lii~e~~  292 (356)
                      ----... . ...++|..+.  .+|+++|.+++ |..
T Consensus       121 DPPY~~~-~-~~~~~l~~l~~~~~l~~~~~ii~-E~~  154 (183)
T PF03602_consen  121 DPPYAKG-L-YYEELLELLAENNLLNEDGLIII-EHS  154 (183)
T ss_dssp             --STTSC-H-HHHHHHHHHHHTTSEEEEEEEEE-EEE
T ss_pred             CCCcccc-h-HHHHHHHHHHHCCCCCCCEEEEE-Eec
Confidence            5433321 1 1366777776  68888876666 443

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor

Probab=95.07  E-value=0.055  Score=36.19  Aligned_cols=47  Identities=19%  Similarity=0.251  Sum_probs=37.0

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      ++.|..+|++.++++      +. .+.+.|+.|...|++..........|.++.
T Consensus         9 ~~~~~~~i~~~l~is------~~-~v~~~l~~L~~~g~i~~~~~~~~~~~~~~~   55 (66)
T smart00418        9 GELCVCELAEILGLS------QS-TVSHHLKKLREAGLVESRREGKRVYYSLTD   55 (66)
T ss_pred             CCccHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeeeeecCCEEEEEEch
Confidence            589999999999997      66 899999999999999965322224555554

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.03  E-value=0.05  Score=49.11  Aligned_cols=65  Identities=25%  Similarity=0.269  Sum_probs=46.9

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFF  246 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~  246 (356)
                      ..++++.+. ..+...++|.--|.|+++..+++++|+.+++++|. |.+++.++++     +|+.++..+|.
T Consensus         9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~   79 (310)
T PF01795_consen    9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS   79 (310)
T ss_dssp             HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred             HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence            456777776 67888999999999999999999999999999996 8888776543     56666666554

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=95.03  E-value=0.033  Score=38.43  Aligned_cols=43  Identities=12%  Similarity=0.288  Sum_probs=35.4

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      |.+.|.+.   +..|+.|||.+++++      +. .++.+|+.|+..|.|.+.
T Consensus         5 i~~~l~~~---~~~S~~eLa~~~~~s------~~-~ve~mL~~l~~kG~I~~~   47 (69)
T PF09012_consen    5 IRDYLRER---GRVSLAELAREFGIS------PE-AVEAMLEQLIRKGYIRKV   47 (69)
T ss_dssp             HHHHHHHS----SEEHHHHHHHTT--------HH-HHHHHHHHHHCCTSCEEE
T ss_pred             HHHHHHHc---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEEe
Confidence            45667775   689999999999997      88 999999999999999954

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein

Probab=95.00  E-value=0.041  Score=34.56  Aligned_cols=40  Identities=18%  Similarity=0.194  Sum_probs=34.3

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL  100 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~  100 (356)
                      +.|..+||+.+|++      +. .+.+.|+.|...|++..   . .+.|.+
T Consensus         8 ~~s~~~la~~l~~s------~~-tv~~~l~~L~~~g~l~~---~-~~~~~i   47 (48)
T smart00419        8 PLTRQEIAELLGLT------RE-TVSRTLKRLEKEGLISR---E-GGRIVI   47 (48)
T ss_pred             ccCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE---e-CCEEEE
Confidence            68999999999997      77 89999999999999994   3 366764

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=94.99  E-value=0.14  Score=44.87  Aligned_cols=76  Identities=13%  Similarity=0.175  Sum_probs=53.9

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhC----CCC---CCceEEEccCCC-CCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNA----PSY---LGIEHVGGDFFE-SVP  250 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~---~~v~~~~~D~~~-~~~  250 (356)
                      +.-|+..+. ..+..+|++-|.|+|.++.++++.. |.-+..-+|. ..-.+.|    +..   +++++...|+-. -++
T Consensus        94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~  172 (314)
T KOG2915|consen   94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL  172 (314)
T ss_pred             HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence            456777777 8899999999999999999999866 6667777775 3333333    332   678888877765 333


Q ss_pred             C----CcEEEe
Q 018405          251 E----ADTILM  257 (356)
Q Consensus       251 ~----~D~i~~  257 (356)
                      .    +|.|++
T Consensus       173 ~ks~~aDaVFL  183 (314)
T KOG2915|consen  173 IKSLKADAVFL  183 (314)
T ss_pred             ccccccceEEE
Confidence            2    377766

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=94.97  E-value=0.15  Score=44.55  Aligned_cols=100  Identities=19%  Similarity=0.132  Sum_probs=64.2

Q ss_pred             CC-CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC------------CCceEEEccCCCC------CCC
Q 018405          191 FE-HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY------------LGIEHVGGDFFES------VPE  251 (356)
Q Consensus       191 ~~-~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------~~v~~~~~D~~~~------~~~  251 (356)
                      ++ ...+||++|+|+|..++ ++.......++.-|.+.........            ..+.....+-..+      .|.
T Consensus        83 ~~~~~~~vlELGsGtglvG~-~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~  161 (248)
T KOG2793|consen   83 FKTKYINVLELGSGTGLVGI-LAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN  161 (248)
T ss_pred             ccccceeEEEecCCccHHHH-HHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence            44 46789999999995554 4444467788888876554433211            1344443333221      233


Q ss_pred             -CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          252 -ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       252 -~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                       .|+|+.+.++++-  +....++.-++..|..++.+++.-...
T Consensus       162 ~~DlilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~lr  202 (248)
T KOG2793|consen  162 PFDLILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYPLR  202 (248)
T ss_pred             cccEEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEecc
Confidence             5999999999875  446788888888888888555544443

>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR

Probab=94.96  E-value=0.048  Score=43.22  Aligned_cols=46  Identities=13%  Similarity=0.190  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      ++.|.++||+.++++      +. .++++|+.|...|++... +...|.|+++.
T Consensus        24 ~~~s~~~ia~~~~ip------~~-~l~kil~~L~~~glv~s~-~G~~Ggy~l~~   69 (135)
T TIGR02010        24 GPVTLADISERQGIS------LS-YLEQLFAKLRKAGLVKSV-RGPGGGYQLGR   69 (135)
T ss_pred             CcCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEEE-eCCCCCEeccC
Confidence            489999999999997      77 999999999999999863 23346788764

This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.

>PRK03902 manganese transport transcriptional regulator; Provisional

Probab=94.93  E-value=0.058  Score=43.11  Aligned_cols=50  Identities=14%  Similarity=0.127  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      |+.++.+||+.++++      +. .+.+.++.|...|+|.+.   ..+.|++|+.|..+.
T Consensus        21 ~~~~~~ela~~l~vs------~~-svs~~l~~L~~~Gli~~~---~~~~i~LT~~G~~~a   70 (142)
T PRK03902         21 GYARVSDIAEALSVH------PS-SVTKMVQKLDKDEYLIYE---KYRGLVLTPKGKKIG   70 (142)
T ss_pred             CCcCHHHHHHHhCCC------hh-HHHHHHHHHHHCCCEEEe---cCceEEECHHHHHHH
Confidence            588999999999997      67 899999999999999853   236799999986443

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.93  E-value=0.074  Score=50.67  Aligned_cols=101  Identities=17%  Similarity=0.163  Sum_probs=67.5

Q ss_pred             HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC--C-
Q 018405          179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE--S-  248 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~-  248 (356)
                      ..+....+.+. ..+..+++|+=||.|.++..++++  ..++++++. +..++.|+.+      .+++|+.+|.++  + 
T Consensus       280 kl~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~  356 (432)
T COG2265         280 KLYETALEWLE-LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA  356 (432)
T ss_pred             HHHHHHHHHHh-hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence            33445555554 567789999999999999999964  446888885 7777776543      568999999876  2 


Q ss_pred             CC---CCcEEEecccccCCChHHHH-HHHHHHHHhCCCCCEEEE
Q 018405          249 VP---EADTILMKWVLSSFDDEQSL-KLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       249 ~~---~~D~i~~~~vlh~~~~~~~~-~~L~~~~~~L~pgG~lii  288 (356)
                      +.   ..|+|+.     +-|..-+. .+++.+. .++|...++|
T Consensus       357 ~~~~~~~d~Vvv-----DPPR~G~~~~~lk~l~-~~~p~~IvYV  394 (432)
T COG2265         357 WWEGYKPDVVVV-----DPPRAGADREVLKQLA-KLKPKRIVYV  394 (432)
T ss_pred             ccccCCCCEEEE-----CCCCCCCCHHHHHHHH-hcCCCcEEEE
Confidence            21   1288877     33333334 4555444 4566666766

>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR

Probab=94.92  E-value=0.054  Score=46.19  Aligned_cols=63  Identities=16%  Similarity=0.251  Sum_probs=47.8

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceee-CCCc----ceecchhchHhh
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV-DGQR----LYSLASVAKYFV  108 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~-~~~~----~y~~t~~~~~l~  108 (356)
                      ..|+..|...   ++.|..+||+.+|++      +. .+++.|+.|...|+|++... .+.|    .|++|+.+..+.
T Consensus         4 ~~IL~~L~~~---~~~t~~eLA~~lgis------~~-tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~   71 (203)
T TIGR02702         4 EDILSYLLKQ---GQATAAALAEALAIS------PQ-AVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF   71 (203)
T ss_pred             HHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence            3466677664   589999999999998      77 99999999999999986521 1123    378888776443

All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=94.83  E-value=0.035  Score=49.70  Aligned_cols=98  Identities=21%  Similarity=0.258  Sum_probs=66.6

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCCC------CCCcEEEe
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFESV------PEADTILM  257 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~------~~~D~i~~  257 (356)
                      ...+|||+=|=||.++...+.. .-.+++.+|. ...++.++++        .+++++..|+++..      ...|+|++
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            5689999999999999976652 2336899996 6667666542        57899999998621      12299986


Q ss_pred             ---cccccCCC-hHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          258 ---KWVLSSFD-DEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       258 ---~~vlh~~~-~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                         ++.=..+. ..+-.++++++.++|+|||.|+.+..
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence               11111111 13467899999999999999887654

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.75  E-value=0.05  Score=40.54  Aligned_cols=31  Identities=26%  Similarity=0.415  Sum_probs=26.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEcc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYD  224 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D  224 (356)
                      .+....+|||||+|.+.--|..  .+.++.++|
T Consensus        57 ~~~~~FVDlGCGNGLLV~IL~~--EGy~G~GiD   87 (112)
T PF07757_consen   57 QKFQGFVDLGCGNGLLVYILNS--EGYPGWGID   87 (112)
T ss_pred             CCCCceEEccCCchHHHHHHHh--CCCCccccc
Confidence            4567899999999999888777  566788888

; GO: 0008168 methyltransferase activity

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=94.70  E-value=0.14  Score=42.45  Aligned_cols=46  Identities=17%  Similarity=0.232  Sum_probs=40.2

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      ..|+++|..+   |++|.++||..+|++      .. .+++.|..|...|++.+..
T Consensus        25 ~~Vl~~L~~~---g~~tdeeLA~~Lgi~------~~-~VRk~L~~L~e~gLv~~~r   70 (178)
T PRK06266         25 FEVLKALIKK---GEVTDEEIAEQTGIK------LN-TVRKILYKLYDARLADYKR   70 (178)
T ss_pred             hHHHHHHHHc---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeEEee
Confidence            3488888876   599999999999997      77 9999999999999999643

>COG4742 Predicted transcriptional regulator [Transcription]

Probab=94.63  E-value=0.06  Score=47.09  Aligned_cols=67  Identities=15%  Similarity=0.235  Sum_probs=56.1

Q ss_pred             HHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           29 AMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        29 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      ++....+..|+-.|.+    ||+|++||-..++++      +. .+..-++-|...|++.   ++ ++.|++|..|..+.
T Consensus         9 if~SekRk~lLllL~e----gPkti~EI~~~l~vs------~~-ai~pqiKkL~~~~LV~---~~-~~~Y~LS~~G~iiv   73 (260)
T COG4742           9 LFLSEKRKDLLLLLKE----GPKTIEEIKNELNVS------SS-AILPQIKKLKDKGLVV---QE-GDRYSLSSLGKIIV   73 (260)
T ss_pred             HHccHHHHHHHHHHHh----CCCCHHHHHHHhCCC------cH-HHHHHHHHHhhCCCEE---ec-CCEEEecchHHHHH
Confidence            3455577888888988    699999999999997      66 7888899999999999   44 59999999998766


Q ss_pred             hC
Q 018405          109 RN  110 (356)
Q Consensus       109 ~~  110 (356)
                      ..
T Consensus        74 ~k   75 (260)
T COG4742          74 EK   75 (260)
T ss_pred             HH
Confidence            43

>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator)

Probab=94.61  E-value=0.054  Score=42.62  Aligned_cols=47  Identities=23%  Similarity=0.262  Sum_probs=38.1

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV  103 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~  103 (356)
                      ++.|..+||+.++++      +. .++++|+.|...|++.... ...|.|.++.-
T Consensus        24 ~~~s~~eia~~~~i~------~~-~v~~il~~L~~~gli~~~~-g~~ggy~l~~~   70 (132)
T TIGR00738        24 GPVSVKEIAERQGIS------RS-YLEKILRTLRRAGLVESVR-GPGGGYRLARP   70 (132)
T ss_pred             CcCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEecc-CCCCCccCCCC
Confidence            489999999999997      77 9999999999999998531 22367877543

This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.

>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors

Probab=94.60  E-value=0.092  Score=36.31  Aligned_cols=55  Identities=18%  Similarity=0.323  Sum_probs=42.0

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      .++..+...    +.+..||++.++++      .. .+.+.|+.|...|++..........|++++
T Consensus        11 ~il~~l~~~----~~~~~ei~~~~~i~------~~-~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~   65 (78)
T cd00090          11 RILRLLLEG----PLTVSELAERLGLS------QS-TVSRHLKKLEEAGLVESRREGRRVYYSLTD   65 (78)
T ss_pred             HHHHHHHHC----CcCHHHHHHHHCcC------Hh-HHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence            455666653    58999999999997      66 899999999999999964322236677775

ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.

>PRK10857 DNA-binding transcriptional regulator IscR; Provisional

Probab=94.56  E-value=0.054  Score=44.38  Aligned_cols=46  Identities=13%  Similarity=0.170  Sum_probs=38.7

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      ++.|+++||+.++++      +. .+.++|..|...|+|... +..+|.|.+..
T Consensus        24 ~~vs~~eIA~~~~ip------~~-~l~kIl~~L~~aGLv~s~-rG~~GGy~Lar   69 (164)
T PRK10857         24 GPVPLADISERQGIS------LS-YLEQLFSRLRKNGLVSSV-RGPGGGYLLGK   69 (164)
T ss_pred             CcCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEeC-CCCCCCeeccC
Confidence            489999999999997      77 999999999999999963 23347788753

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.56  E-value=0.09  Score=48.40  Aligned_cols=110  Identities=17%  Similarity=0.322  Sum_probs=77.1

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc---hHHHHh------------CCC-CCCceEEEcc
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL---PYVIKN------------APS-YLGIEHVGGD  244 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~------------a~~-~~~v~~~~~D  244 (356)
                      ...+++.+. ..+.....|+|+|.|.....++.....-.-+|+.+   |.-+..            +.+ ...++++.++
T Consensus       181 l~si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gs  259 (419)
T KOG3924|consen  181 LRSIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGS  259 (419)
T ss_pred             HHHHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccc
Confidence            345566666 77889999999999999998877655545555552   222111            111 2457888899


Q ss_pred             CCCC------CCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          245 FFES------VPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       245 ~~~~------~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                      +..+      .+++++|++.++..+   ++...=++++..-+++|-+++-.++..+
T Consensus       260 f~~~~~v~eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~~~L~~  312 (419)
T KOG3924|consen  260 FLDPKRVTEIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISSKPLVP  312 (419)
T ss_pred             cCCHHHHHHHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEeccccccc
Confidence            8874      356799999998764   3344445588888999999999888876

>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=94.54  E-value=0.069  Score=34.55  Aligned_cols=40  Identities=18%  Similarity=0.469  Sum_probs=31.8

Q ss_pred             HHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHH
Q 018405           27 PAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLR   79 (356)
Q Consensus        27 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~   79 (356)
                      -.+|.+|.+.|-|+. ..     ..|+.|||+.+|++      +. .+...||
T Consensus         6 ~e~L~~A~~~GYfd~-PR-----~~tl~elA~~lgis------~s-t~~~~LR   45 (53)
T PF04967_consen    6 REILKAAYELGYFDV-PR-----RITLEELAEELGIS------KS-TVSEHLR   45 (53)
T ss_pred             HHHHHHHHHcCCCCC-CC-----cCCHHHHHHHhCCC------HH-HHHHHHH
Confidence            468999999999998 33     68999999999997      44 4444444

This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.

>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length

Probab=94.43  E-value=0.098  Score=37.90  Aligned_cols=69  Identities=19%  Similarity=0.160  Sum_probs=49.6

Q ss_pred             HHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHH----------HHhhCCcc-cceeeCCCcceec
Q 018405           32 AVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLR----------LLVSYNAL-HCSFVDGQRLYSL  100 (356)
Q Consensus        32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~----------~l~~~g~l-~~~~~~~~~~y~~  100 (356)
                      .=++..++..|.+..| .+.++.|||..++++      +. .+..-|+          .|+.+|++ .+....+...|++
T Consensus         8 S~~R~~vl~~L~~~yp-~~~~~~eIar~v~~~------~s-nV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~l   79 (90)
T PF07381_consen    8 SKVRKKVLEYLCSIYP-EPAYPSEIARSVGSD------YS-NVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRL   79 (90)
T ss_pred             HHHHHHHHHHHHHcCC-CcCCHHHHHHHHCCC------HH-HHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEe
Confidence            3456778888888633 589999999999997      66 5555553          68899999 4332233357999


Q ss_pred             chhchHhh
Q 018405          101 ASVAKYFV  108 (356)
Q Consensus       101 t~~~~~l~  108 (356)
                      |+.|..+.
T Consensus        80 T~~G~~~~   87 (90)
T PF07381_consen   80 TEKGKRIA   87 (90)
T ss_pred             ChhhhhHH
Confidence            99887543

The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=94.24  E-value=0.062  Score=36.03  Aligned_cols=44  Identities=20%  Similarity=0.191  Sum_probs=35.2

Q ss_pred             CchhHHHh-CCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           37 DVFEIISK-AGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        37 glf~~L~~-~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      .|.+.|.. .   +|.|..|||+++|++      .. -.+++|..|...|.+...
T Consensus         4 ~Il~~i~~~~---~p~~T~eiA~~~gls------~~-~aR~yL~~Le~eG~V~~~   48 (62)
T PF04703_consen    4 KILEYIKEQN---GPLKTREIADALGLS------IY-QARYYLEKLEKEGKVERS   48 (62)
T ss_dssp             CHHHHHHHHT---S-EEHHHHHHHHTS-------HH-HHHHHHHHHHHCTSEEEE
T ss_pred             HHHHHHHHcC---CCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEEe
Confidence            35556655 3   599999999999997      77 899999999999999853

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=94.22  E-value=0.3  Score=45.80  Aligned_cols=110  Identities=17%  Similarity=0.263  Sum_probs=62.5

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-------CCCeEEEccchH-----HHHhCCCC-------CCce--E
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-------PRIKGINYDLPY-----VIKNAPSY-------LGIE--H  240 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------p~~~~~~~D~~~-----~~~~a~~~-------~~v~--~  240 (356)
                      ..|++.+. -.+...|+|+|.|.|.--..|.+.+       |.+++|+++.|.     .++.+.++       -+|.  |
T Consensus       100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef  178 (374)
T PF03514_consen  100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF  178 (374)
T ss_pred             HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence            46777776 4466799999999997554444433       778899998622     23332221       2333  3


Q ss_pred             EEc--cCCCC-------CCCCc--EEEecccccCCChH------HHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          241 VGG--DFFES-------VPEAD--TILMKWVLSSFDDE------QSLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       241 ~~~--D~~~~-------~~~~D--~i~~~~vlh~~~~~------~~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                      ...  +-.+.       ...++  +|-+...||++.++      ....+|+.++ .|+|. .++++|.-.+
T Consensus       179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~-vvv~~E~ea~  247 (374)
T PF03514_consen  179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPK-VVVLVEQEAD  247 (374)
T ss_pred             EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCC-EEEEEeecCC
Confidence            331  11111       11122  33467778998633      2345777666 67886 5666666544

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=94.07  E-value=0.19  Score=47.87  Aligned_cols=99  Identities=18%  Similarity=0.300  Sum_probs=63.1

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCe--EEEccchHHHHhCCCCCCceEEEccCCC---CCCCC-cEEEecccccCC
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIK--GINYDLPYVIKNAPSYLGIEHVGGDFFE---SVPEA-DTILMKWVLSSF  264 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~--~~~~D~~~~~~~a~~~~~v~~~~~D~~~---~~~~~-D~i~~~~vlh~~  264 (356)
                      ......|+|..+|.|.++.+|.+. |=+.  ++-.+-+..+...-.+ ++-=+-+|.-+   .+|.. |+|-..+++..+
T Consensus       363 ~~~iRNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~~~~ntL~vIydR-GLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~  440 (506)
T PF03141_consen  363 WGRIRNVMDMNAGYGGFAAALIDD-PVWVMNVVPVSGPNTLPVIYDR-GLIGVYHDWCEAFSTYPRTYDLLHADGLFSLY  440 (506)
T ss_pred             ccceeeeeeecccccHHHHHhccC-CceEEEecccCCCCcchhhhhc-ccchhccchhhccCCCCcchhheehhhhhhhh
Confidence            446689999999999999999763 3211  1111112222222111 12223344434   34555 999988888776


Q ss_pred             ChH-HHHHHHHHHHHhCCCCCEEEEEec
Q 018405          265 DDE-QSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       265 ~~~-~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      .+. +...+|-++-|.|+|||.++|-|.
T Consensus       441 ~~rC~~~~illEmDRILRP~G~~iiRD~  468 (506)
T PF03141_consen  441 KDRCEMEDILLEMDRILRPGGWVIIRDT  468 (506)
T ss_pred             cccccHHHHHHHhHhhcCCCceEEEecc
Confidence            433 567999999999999999999653

; GO: 0008168 methyltransferase activity

>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed

Probab=93.89  E-value=0.089  Score=42.63  Aligned_cols=47  Identities=15%  Similarity=0.085  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV  103 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~  103 (356)
                      ++.|+.+||+..+++      +. .|+++|..|...|++.+.. ...|.|+++..
T Consensus        23 ~~~s~~eIA~~~~is------~~-~L~kIl~~L~~aGlv~S~r-G~~GGy~La~~   69 (153)
T PRK11920         23 KLSRIPEIARAYGVS------EL-FLFKILQPLVEAGLVETVR-GRNGGVRLGRP   69 (153)
T ss_pred             CcCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEeec-CCCCCeeecCC
Confidence            478999999999997      78 9999999999999999753 33588887643

>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein

Probab=93.85  E-value=0.13  Score=37.90  Aligned_cols=64  Identities=20%  Similarity=0.257  Sum_probs=46.9

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC---CcceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG---QRLYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~---~~~y~~t~~~~~l~  108 (356)
                      ++.++..|...   ++.|..+|++.++++      +. .+.+.++-|+..|++......+   ...|.+|+.|..+.
T Consensus        12 ~~~il~~l~~~---~~~~~~~la~~~~~s------~~-~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~   78 (101)
T smart00347       12 QFLVLRILYEE---GPLSVSELAKRLGVS------PS-TVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI   78 (101)
T ss_pred             HHHHHHHHHHc---CCcCHHHHHHHHCCC------ch-hHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence            45567777664   479999999999997      66 8999999999999998542111   13567777765433

>PRK11014 transcriptional repressor NsrR; Provisional

Probab=93.76  E-value=0.12  Score=41.22  Aligned_cols=46  Identities=9%  Similarity=0.032  Sum_probs=38.0

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      .+.|..+||+.+|++      +. .+++.|..|...|++..... ..|.|.+..
T Consensus        24 ~~~s~~~ia~~~~is------~~-~vrk~l~~L~~~Glv~s~~G-~~GG~~l~~   69 (141)
T PRK11014         24 RMTSISEVTEVYGVS------RN-HMVKIINQLSRAGYVTAVRG-KNGGIRLGK   69 (141)
T ss_pred             CccCHHHHHHHHCcC------HH-HHHHHHHHHHhCCEEEEecC-CCCCeeecC
Confidence            478999999999997      77 99999999999999997532 236787753

>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein

Probab=93.61  E-value=0.11  Score=44.41  Aligned_cols=60  Identities=23%  Similarity=0.277  Sum_probs=46.9

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      .+..++..|.+.   ++.+..+||+.++++      +. .+.+.|+.|...|++.+... ....|.+|+.|
T Consensus       144 ~~~~IL~~l~~~---g~~s~~eia~~l~is------~s-tv~r~L~~Le~~GlI~r~~~-r~~~~~lT~~G  203 (203)
T TIGR01884       144 EELKVLEVLKAE---GEKSVKNIAKKLGKS------LS-TISRHLRELEKKGLVEQKGR-KGKRYSLTKLG  203 (203)
T ss_pred             HHHHHHHHHHHc---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEcC-CccEEEeCCCC
Confidence            345677777765   478999999999997      67 89999999999999996531 23568887654

Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.50  E-value=0.18  Score=43.00  Aligned_cols=94  Identities=26%  Similarity=0.334  Sum_probs=65.7

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC----CC-----CeEEEccchHHHHhCCCCCCceEEEccCCCC---------CC--
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY----PR-----IKGINYDLPYVIKNAPSYLGIEHVGGDFFES---------VP--  250 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~----p~-----~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~~--  250 (356)
                      +.+..|++|+.+-.|.++.-+.+++    |.     -+++.+|+..|..    .++|.-+++|+.++         +.  
T Consensus        39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgge  114 (294)
T KOG1099|consen   39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGGE  114 (294)
T ss_pred             HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCCC
Confidence            5577899999999999988887765    21     1278888754433    25788889998873         22  


Q ss_pred             CCcEEEec-----ccccCCChHH----HHHHHHHHHHhCCCCCEEEE
Q 018405          251 EADTILMK-----WVLSSFDDEQ----SLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       251 ~~D~i~~~-----~vlh~~~~~~----~~~~L~~~~~~L~pgG~lii  288 (356)
                      .+|+|+|-     --+|+++.--    ....|.-...+|+|||.++-
T Consensus       115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa  161 (294)
T KOG1099|consen  115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA  161 (294)
T ss_pred             CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence            24999984     3578774321    33456666778999998875

>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea

Probab=93.49  E-value=0.18  Score=34.41  Aligned_cols=61  Identities=11%  Similarity=0.198  Sum_probs=43.1

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK  105 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~  105 (356)
                      |++.|.+.+  +|++..+|++.+.....+ ..+. .++|.|++|...|++..   .+.+.+.+|+.|.
T Consensus         3 IL~~L~~~~--~P~g~~~l~~~L~~~g~~-~se~-avRrrLr~me~~Glt~~---~g~~G~~iT~~G~   63 (66)
T PF08461_consen    3 ILRILAESD--KPLGRKQLAEELKLRGEE-LSEE-AVRRRLRAMERDGLTRK---VGRQGRIITEKGL   63 (66)
T ss_pred             HHHHHHHcC--CCCCHHHHHHHHHhcChh-hhHH-HHHHHHHHHHHCCCccc---cCCcccccCHHHH
Confidence            456676653  699999999998764111 1145 89999999999997773   3334457887764

>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial

Probab=93.42  E-value=0.098  Score=41.09  Aligned_cols=45  Identities=27%  Similarity=0.282  Sum_probs=36.6

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      ++.|+.|||++++++      +. .+.+.|+.|...|++.... ..+|.|.+.
T Consensus        24 ~~~s~~eia~~l~is------~~-~v~~~l~~L~~~Gli~~~~-g~~ggy~l~   68 (130)
T TIGR02944        24 QPYSAAEIAEQTGLN------AP-TVSKILKQLSLAGIVTSKR-GVEGGYTLA   68 (130)
T ss_pred             CCccHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEecC-CCCCChhhc
Confidence            589999999999997      77 9999999999999998531 223567664

The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=93.36  E-value=1.1  Score=41.81  Aligned_cols=104  Identities=18%  Similarity=0.215  Sum_probs=68.7

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCC--CeEEEccc-hHHHHhCCC----C--CCceEEEccCCC---CCCC---CcEE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPR--IKGINYDL-PYVIKNAPS----Y--LGIEHVGGDFFE---SVPE---ADTI  255 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~----~--~~v~~~~~D~~~---~~~~---~D~i  255 (356)
                      ..++.+|||..++.|.=+.++++..++  ..++.+|. +.-++....    .  .++..+..|...   ..+.   .|.|
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i  233 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI  233 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence            667899999999999999999998876  45688885 443333222    1  345667766542   1221   3666


Q ss_pred             Ee------cccc-------cCCChHH-------HHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          256 LM------KWVL-------SSFDDEQ-------SLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       256 ~~------~~vl-------h~~~~~~-------~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                      ++      ..++       ..++.++       -.++|..+.+.|||||.|+-......
T Consensus       234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~  292 (355)
T COG0144         234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT  292 (355)
T ss_pred             EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence            53      2233       3333332       34789999999999999998766554

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=93.34  E-value=0.16  Score=33.50  Aligned_cols=42  Identities=19%  Similarity=0.331  Sum_probs=37.1

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      |.+.|...   +..|++|||+.+|++      +. -++|=|..|...|++.+
T Consensus         5 Il~~l~~~---~~~s~~ela~~~~VS------~~-TiRRDl~~L~~~g~i~r   46 (57)
T PF08220_consen    5 ILELLKEK---GKVSVKELAEEFGVS------EM-TIRRDLNKLEKQGLIKR   46 (57)
T ss_pred             HHHHHHHc---CCEEHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence            56677775   699999999999998      77 89999999999999984

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=93.29  E-value=0.47  Score=45.12  Aligned_cols=100  Identities=20%  Similarity=0.324  Sum_probs=71.9

Q ss_pred             ceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhC-----CCCCCceEEEccCCC-CCCCC--cEEEecccccCC
Q 018405          195 KKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNA-----PSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSF  264 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a-----~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~  264 (356)
                      -+++-+|||.-.+...+-+. +++  ++.+|. +.+++..     +.++...+...|+.. .+++.  |+|+....++++
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~d--I~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal  127 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFED--ITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL  127 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCC--ceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccc
Confidence            39999999999988888773 343  455554 3333322     334668889999888 77754  999999999985


Q ss_pred             -ChHH-------HHHHHHHHHHhCCCCCEEEEEecc--cCCC
Q 018405          265 -DDEQ-------SLKLLKNCYKALPDGGKLLNVNVT--IPEV  296 (356)
Q Consensus       265 -~~~~-------~~~~L~~~~~~L~pgG~lii~e~~--~~~~  296 (356)
                       .+++       ....+..+.++++|||+++.+...  .+..
T Consensus       128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~  169 (482)
T KOG2352|consen  128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQG  169 (482)
T ss_pred             cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCC
Confidence             2322       335789999999999999998774  4444

>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]

Probab=93.23  E-value=0.19  Score=40.69  Aligned_cols=51  Identities=8%  Similarity=0.088  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhhh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVR  109 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~~  109 (356)
                      |+....+||+.++++      |. -+...++-|...|+++++   ..+.+.+|+.|.....
T Consensus        23 ~~~~~~diA~~L~Vs------p~-sVt~ml~rL~~~GlV~~~---~y~gi~LT~~G~~~a~   73 (154)
T COG1321          23 GFARTKDIAERLKVS------PP-SVTEMLKRLERLGLVEYE---PYGGVTLTEKGREKAK   73 (154)
T ss_pred             CcccHHHHHHHhCCC------cH-HHHHHHHHHHHCCCeEEe---cCCCeEEChhhHHHHH
Confidence            689999999999998      77 888999999999999974   2478999999875554

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=93.16  E-value=0.13  Score=49.04  Aligned_cols=54  Identities=20%  Similarity=0.257  Sum_probs=42.6

Q ss_pred             CCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccC
Q 018405          190 GFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDF  245 (356)
Q Consensus       190 ~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~  245 (356)
                      +++....++|+-||||.+...+++..  .+++++++ |+.++.|+..      .+.+|++|-.
T Consensus       380 ~l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa  440 (534)
T KOG2187|consen  380 GLPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA  440 (534)
T ss_pred             CCCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecch
Confidence            37788999999999999999998844  46788875 7777777653      5788998833

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=93.00  E-value=0.23  Score=44.07  Aligned_cols=99  Identities=21%  Similarity=0.241  Sum_probs=65.6

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCe-EEEccc-hHHHHhCCCC----------CCceEEEccCCC---CCCCC--c
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIK-GINYDL-PYVIKNAPSY----------LGIEHVGGDFFE---SVPEA--D  253 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~~~--D  253 (356)
                      ...+.++|-||+|-|...+..++. +.+. +..+|. ..+++..+++          ++|.++.||-+.   ..+++  |
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d  197 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD  197 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence            447899999999999999988876 6654 455564 5555554432          689999999765   33333  8


Q ss_pred             EEEecccccCCChH--HHHHHHHHHHHhCCCCCEEEEEe
Q 018405          254 TILMKWVLSSFDDE--QSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       254 ~i~~~~vlh~~~~~--~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +|+.-..=-..|-.  -....++-+.++|||||.+++..
T Consensus       198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            88763221111110  02355667788999999998865

>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family

Probab=92.91  E-value=0.24  Score=37.54  Aligned_cols=66  Identities=18%  Similarity=0.257  Sum_probs=46.0

Q ss_pred             HhcCchhHHH--hCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHh
Q 018405           34 VELDVFEIIS--KAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYF  107 (356)
Q Consensus        34 ~~lglf~~L~--~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l  107 (356)
                      .+..++..|.  ..+ +++.|..+||..++++      +. .+.+.++.|+..|+|.+...+.+.   ...+|+.|..+
T Consensus        26 ~q~~vL~~l~~~~~~-~~~~t~~eL~~~l~~~------~s-tvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~   96 (109)
T TIGR01889        26 EELLILYYLGKLENN-EGKLTLKEIIKEILIK------QS-ALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSK   96 (109)
T ss_pred             HHHHHHHHHHhhhcc-CCcCcHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHH
Confidence            3444555555  111 1589999999999997      77 899999999999999975333232   24566666533

This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=92.89  E-value=0.039  Score=41.39  Aligned_cols=84  Identities=18%  Similarity=0.228  Sum_probs=42.3

Q ss_pred             cEEEeccccc----CCChHHHHHHHHHHHHhCCCCCEEEEEeccc-CCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHH
Q 018405          253 DTILMKWVLS----SFDDEQSLKLLKNCYKALPDGGKLLNVNVTI-PEVPENSATSREISILDTICLFQVPHGRERTKQE  327 (356)
Q Consensus       253 D~i~~~~vlh----~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e  327 (356)
                      |+|+|..|.-    ++.|+-...+++++++.|+|||.+++ |+-. ......   ........-.+     ..-...+++
T Consensus         3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~---~~~~~~~~~n~-----~~i~lrP~~   73 (110)
T PF06859_consen    3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKA---KRLSEEIRENY-----KSIKLRPDQ   73 (110)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTT---TTS-HHHHHHH-----HH----GGG
T ss_pred             cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHH---hhhhHHHHhHH-----hceEEChHH
Confidence            7777765532    35788899999999999999999888 3211 000000   00000000011     111134567


Q ss_pred             HHHHHHH--cCCcceeEEEc
Q 018405          328 YSELAIK--AGFKGVNYEYG  345 (356)
Q Consensus       328 ~~~ll~~--aGf~~~~~~~~  345 (356)
                      +.+.|.+  .||+..+....
T Consensus        74 F~~~L~~~evGF~~~e~~~~   93 (110)
T PF06859_consen   74 FEDYLLEPEVGFSSVEELGV   93 (110)
T ss_dssp             HHHHHTSTTT---EEEEE--
T ss_pred             HHHHHHhcccceEEEEEccc
Confidence            8888877  69998875544

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional

Probab=92.82  E-value=0.22  Score=42.72  Aligned_cols=53  Identities=15%  Similarity=0.187  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      ...|..|||+.++++      +. .+.|.|+.|...|++++........+++|+.|..+.
T Consensus        20 ~~IS~~eLA~~L~iS------~~-Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~~ll   72 (217)
T PRK14165         20 VKISSSEFANHTGTS------SK-TAARILKQLEDEGYITRTIVPRGQLITITEKGLDVL   72 (217)
T ss_pred             CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEEcCCceEEEECHHHHHHH
Confidence            368999999999998      77 899999999999999975333346788888887444

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=92.78  E-value=0.26  Score=37.74  Aligned_cols=56  Identities=18%  Similarity=0.378  Sum_probs=45.7

Q ss_pred             HHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC-ccee
Q 018405           31 HAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ-RLYS   99 (356)
Q Consensus        31 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~-~~y~   99 (356)
                      +..++..|.+.+.++   |..|+.+++..+|++      .. -+++.++.|++.|-|..   .+. |.|.
T Consensus        10 r~eLk~rIvElVRe~---GRiTi~ql~~~TGas------R~-Tvk~~lreLVa~G~l~~---~G~~GvF~   66 (127)
T PF06163_consen   10 REELKARIVELVREH---GRITIKQLVAKTGAS------RN-TVKRYLRELVARGDLYR---HGRSGVFP   66 (127)
T ss_pred             HHHHHHHHHHHHHHc---CCccHHHHHHHHCCC------HH-HHHHHHHHHHHcCCeEe---CCCccccc
Confidence            345667788888887   699999999999997      66 89999999999999994   333 5553

>PRK03573 transcriptional regulator SlyA; Provisional

Probab=92.75  E-value=1.2  Score=35.46  Aligned_cols=62  Identities=15%  Similarity=0.143  Sum_probs=45.0

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      ++..|...+  ++.|..+||+.++++      +. .+.+.++-|+..|+|++...+.+   -...+|+.|..+.
T Consensus        36 vL~~l~~~~--~~~t~~eLa~~l~~~------~~-tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~  100 (144)
T PRK03573         36 TLHNIHQLP--PEQSQIQLAKAIGIE------QP-SLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLI  100 (144)
T ss_pred             HHHHHHHcC--CCCCHHHHHHHhCCC------hh-hHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHH
Confidence            455555432  368999999999998      67 89999999999999997532222   2456777776444

>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family

Probab=92.71  E-value=0.16  Score=33.90  Aligned_cols=35  Identities=9%  Similarity=0.231  Sum_probs=31.5

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      ++.+..+||+.+|++      +. -+...++-|...|+++++
T Consensus        21 ~~v~~~~iA~~L~vs------~~-tvt~ml~~L~~~GlV~~~   55 (60)
T PF01325_consen   21 GPVRTKDIAERLGVS------PP-TVTEMLKRLAEKGLVEYE   55 (60)
T ss_dssp             SSBBHHHHHHHHTS-------HH-HHHHHHHHHHHTTSEEEE
T ss_pred             CCccHHHHHHHHCCC------hH-HHHHHHHHHHHCCCEEec
Confidence            699999999999997      77 899999999999999964

The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=92.64  E-value=0.14  Score=47.67  Aligned_cols=64  Identities=20%  Similarity=0.241  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccC
Q 018405          178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDF  245 (356)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~  245 (356)
                      ...+..+++.++ .++. +|||+=||.|.++..+++...  ++++++. +.+++.|+.+      .+++|+.++.
T Consensus       183 ~~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~  253 (352)
T PF05958_consen  183 EKLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA  253 (352)
T ss_dssp             HHHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred             HHHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence            344555666565 4444 899999999999999998654  6888885 7777777543      6788887654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=92.58  E-value=0.21  Score=40.64  Aligned_cols=46  Identities=13%  Similarity=0.049  Sum_probs=39.2

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      ..|+++|-.+   |.+|-+|||+.+|++      .. .+++.|..|...|++.+..
T Consensus        17 v~Vl~aL~~~---~~~tdEeLa~~Lgi~------~~-~VRk~L~~L~e~~Lv~~~r   62 (158)
T TIGR00373        17 GLVLFSLGIK---GEFTDEEISLELGIK------LN-EVRKALYALYDAGLADYKR   62 (158)
T ss_pred             HHHHHHHhcc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCceeee
Confidence            4467777755   589999999999997      77 8999999999999998543

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=92.52  E-value=0.32  Score=43.43  Aligned_cols=66  Identities=24%  Similarity=0.260  Sum_probs=53.1

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCe-EEEccc-hHHHHhCCCC-----CCceEEEccCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIK-GINYDL-PYVIKNAPSY-----LGIEHVGGDFF  246 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~  246 (356)
                      .....++.+. ..+.+..+|.--|.|+++..+++.+|... .+++|. |.+++.|++.     +|+.++..+|.
T Consensus        11 Ll~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~   83 (314)
T COG0275          11 LLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA   83 (314)
T ss_pred             HHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence            3466777777 77889999999999999999999998765 999996 8888888653     46777666543

>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor

Probab=92.48  E-value=0.27  Score=31.27  Aligned_cols=42  Identities=21%  Similarity=0.337  Sum_probs=35.2

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +++.|.+.   ++.|+.+|++.++++      +. .+.+.|..|...|++..
T Consensus         5 il~~l~~~---~~~s~~~l~~~l~~s------~~-tv~~~l~~L~~~g~i~~   46 (53)
T smart00420        5 ILELLAQQ---GKVSVEELAELLGVS------EM-TIRRDLNKLEEQGLLTR   46 (53)
T ss_pred             HHHHHHHc---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE
Confidence            44555554   479999999999997      77 89999999999999994

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=92.29  E-value=1.2  Score=40.77  Aligned_cols=93  Identities=24%  Similarity=0.172  Sum_probs=64.3

Q ss_pred             CCCCceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEcc---CCCCCCC-CcEEEecccccCC
Q 018405          191 FEHVKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGD---FFESVPE-ADTILMKWVLSSF  264 (356)
Q Consensus       191 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D---~~~~~~~-~D~i~~~~vlh~~  264 (356)
                      .++..+|+-+|+| .|.++.+++++.- .+++++|. ++-.+.|++...-.++...   ..+...+ .|+|+..-.    
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----  238 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----  238 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC----
Confidence            5577888888876 6679999999876 99999996 6667777665444555432   2222222 488776544    


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          265 DDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       265 ~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                           ...+....++|++||+++++-...
T Consensus       239 -----~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         239 -----PATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             -----hhhHHHHHHHHhcCCEEEEECCCC
Confidence                 234556677889999999987663

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=92.17  E-value=0.63  Score=38.76  Aligned_cols=95  Identities=12%  Similarity=-0.022  Sum_probs=59.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-------CCCceEEEccCCC--CC--CC--CcEEEec
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-------YLGIEHVGGDFFE--SV--PE--ADTILMK  258 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~--~~--~~--~D~i~~~  258 (356)
                      ...++||+=+|+|.++.+-+.+... +++.+|. .......++       ..++.+...|...  ..  ..  .|+|++-
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRGA~-~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD  121 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRGAA-RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD  121 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCCCc-eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence            4689999999999999998887543 5666664 444433332       2567777777763  11  12  4999985


Q ss_pred             ccccCCChHHHHHHHHH--HHHhCCCCCEEEEE
Q 018405          259 WVLSSFDDEQSLKLLKN--CYKALPDGGKLLNV  289 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~--~~~~L~pgG~lii~  289 (356)
                      --.+. .--+....+..  -..+|+|+|.+++-
T Consensus       122 PPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E  153 (187)
T COG0742         122 PPYAK-GLLDKELALLLLEENGWLKPGALIVVE  153 (187)
T ss_pred             CCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence            55551 11111222322  45679999887773

>PHA02943 hypothetical protein; Provisional

Probab=92.12  E-value=0.33  Score=38.44  Aligned_cols=44  Identities=9%  Similarity=0.113  Sum_probs=36.5

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      .+++.|..    |..|..|||+++|++      .. ..+-.|..|...|.+.+..
T Consensus        15 eILE~Lk~----G~~TtseIAkaLGlS------~~-qa~~~LyvLErEG~VkrV~   58 (165)
T PHA02943         15 KTLRLLAD----GCKTTSRIANKLGVS------HS-MARNALYQLAKEGMVLKVE   58 (165)
T ss_pred             HHHHHHhc----CCccHHHHHHHHCCC------HH-HHHHHHHHHHHcCceEEEe
Confidence            45666633    689999999999997      66 7888999999999999753

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.09  E-value=0.58  Score=37.11  Aligned_cols=106  Identities=16%  Similarity=0.233  Sum_probs=66.6

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA  252 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~  252 (356)
                      .++++.++ -.+.++.+|+|+|.|....+.++.. -...+++++ |..+..++-+       .+..|...|+++ +..+.
T Consensus        62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy  139 (199)
T KOG4058|consen   62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY  139 (199)
T ss_pred             HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence            45566555 4456899999999999887766543 345677886 6655544321       467888888887 55544


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE  295 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~  295 (356)
                       .++++ .+=     .-...+-.+++.-|+.+.+++-+-+-.|+
T Consensus       140 ~~vviF-gae-----s~m~dLe~KL~~E~p~nt~vvacRFPLP~  177 (199)
T KOG4058|consen  140 RNVVIF-GAE-----SVMPDLEDKLRTELPANTRVVACRFPLPT  177 (199)
T ss_pred             ceEEEe-ehH-----HHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence             33322 111     11233445677778888888887665543

>TIGR00122 birA_repr_reg BirA biotin operon repressor domain

Probab=92.08  E-value=0.27  Score=33.73  Aligned_cols=53  Identities=9%  Similarity=0.214  Sum_probs=40.7

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      +.++..|.+    ++.|..+||+.+|++      .. .+++-++.|.+.|+....  . +..|++.+
T Consensus         3 ~~il~~L~~----~~~~~~eLa~~l~vS------~~-tv~~~l~~L~~~g~~i~~--~-~~g~~l~~   55 (69)
T TIGR00122         3 LRLLALLAD----NPFSGEKLGEALGMS------RT-AVNKHIQTLREWGVDVLT--V-GKGYRLPP   55 (69)
T ss_pred             HHHHHHHHc----CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeEEe--c-CCceEecC
Confidence            456777776    488999999999998      77 899999999999996532  2 35566543

This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=92.04  E-value=0.81  Score=38.02  Aligned_cols=103  Identities=16%  Similarity=0.162  Sum_probs=74.3

Q ss_pred             CCceEEEEcCCccHHHHHHHH----hCCCCeEEEccch--HHHHhCCCCCCceEEEccCCCC-C-------CCC--cEEE
Q 018405          193 HVKKLVDVGGGLGATLNMIIS----KYPRIKGINYDLP--YVIKNAPSYLGIEHVGGDFFES-V-------PEA--DTIL  256 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~----~~p~~~~~~~D~~--~~~~~a~~~~~v~~~~~D~~~~-~-------~~~--D~i~  256 (356)
                      ++..|+++|.-.|..+..++.    .....+++++|+.  ..-..|.+.++|.|++++-.+| .       ...  -+.+
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv  148 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV  148 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence            578999999988877666554    2234677777742  2223334458999999997764 1       111  6778


Q ss_pred             ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCC
Q 018405          257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVP  297 (356)
Q Consensus       257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~  297 (356)
                      |-..-|++  +...+.|+-...+|..|-++++-|...++-+
T Consensus       149 ilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp  187 (237)
T COG3510         149 ILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLP  187 (237)
T ss_pred             EecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence            88888877  6688999999999999999999888776543

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=91.88  E-value=0.44  Score=44.17  Aligned_cols=111  Identities=17%  Similarity=0.123  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCC---------------------------------------
Q 018405          178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRI---------------------------------------  218 (356)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~---------------------------------------  218 (356)
                      ...+..++.. .++.+...++|==||+|.++++.+-..+++                                       
T Consensus       177 etLAaAil~l-agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~  255 (381)
T COG0116         177 ETLAAAILLL-AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP  255 (381)
T ss_pred             HHHHHHHHHH-cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence            3445556553 448888899999999999999988766532                                       


Q ss_pred             eEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC-CC-cEEEecccccC-CChH-HHH----HHHHHHHHhCC
Q 018405          219 KGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP-EA-DTILMKWVLSS-FDDE-QSL----KLLKNCYKALP  281 (356)
Q Consensus       219 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~~-D~i~~~~vlh~-~~~~-~~~----~~L~~~~~~L~  281 (356)
                      .++++|. +.+++.|+.+       +.|+|.++|+.. ..| +. |+|+++--=-. +.++ ...    .+.+.+++.++
T Consensus       256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~  335 (381)
T COG0116         256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA  335 (381)
T ss_pred             eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence            2668996 8888887654       569999999887 333 33 88888532111 1222 122    34445555555


Q ss_pred             CCCEEEEE
Q 018405          282 DGGKLLNV  289 (356)
Q Consensus       282 pgG~lii~  289 (356)
                      .-++.++.
T Consensus       336 ~ws~~v~t  343 (381)
T COG0116         336 GWSRYVFT  343 (381)
T ss_pred             CCceEEEE
Confidence            55566664

>COG4189 Predicted transcriptional regulator [Transcription]

Probab=91.67  E-value=0.35  Score=41.15  Aligned_cols=55  Identities=15%  Similarity=0.323  Sum_probs=47.7

Q ss_pred             HHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           26 LPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        26 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      +-++|...++..|++.|...   ||+.+.|||+++|++      .. -+..-+..|+..|++..+
T Consensus        16 v~kalaS~vRv~Il~lL~~k---~plNvneiAe~lgLp------qs-t~s~~ik~Le~aGlirT~   70 (308)
T COG4189          16 VLKALASKVRVAILQLLHRK---GPLNVNEIAEALGLP------QS-TMSANIKVLEKAGLIRTE   70 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHhCCc------hh-hhhhhHHHHHhcCceeee
Confidence            45778888999999999987   699999999999996      44 677789999999999864

>KOG2730 consensus Methylase [General function prediction only]

Probab=91.66  E-value=0.19  Score=42.67  Aligned_cols=90  Identities=18%  Similarity=0.159  Sum_probs=56.2

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCC--C-C-cEEEeccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVP--E-A-DTILMKWV  260 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~--~-~-D~i~~~~v  260 (356)
                      ....|+|.-||.|+.+..++..+|.  ++.+|. |.-+..|+.+       +||+|++||+++...  + + |.+.+...
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~  171 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL  171 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence            5678999999999999999998875  555554 5556555543       799999999987211  2 2 44433333


Q ss_pred             ccCCCh-HHHHHHHHHHHHhCCCCC
Q 018405          261 LSSFDD-EQSLKLLKNCYKALPDGG  284 (356)
Q Consensus       261 lh~~~~-~~~~~~L~~~~~~L~pgG  284 (356)
                      ---|.- .....-+-.+...++|.|
T Consensus       172 sppwggp~y~~~~~~DL~~~~~p~~  196 (263)
T KOG2730|consen  172 SPPWGGPSYLRADVYDLETHLKPMG  196 (263)
T ss_pred             CCCCCCcchhhhhhhhhhhhcchhH
Confidence            333321 223444444555555553

>smart00344 HTH_ASNC helix_turn_helix ASNC type

Probab=91.65  E-value=0.27  Score=37.04  Aligned_cols=45  Identities=18%  Similarity=0.376  Sum_probs=39.2

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      .+..|+..|...   ++.|..+||+.+|++      +. .+.+.++.|...|++.
T Consensus         4 ~D~~il~~L~~~---~~~~~~~la~~l~~s------~~-tv~~~l~~L~~~g~i~   48 (108)
T smart00344        4 IDRKILEELQKD---ARISLAELAKKVGLS------PS-TVHNRVKRLEEEGVIK   48 (108)
T ss_pred             HHHHHHHHHHHh---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCee
Confidence            356677888775   489999999999997      77 8999999999999998

AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli

>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element

Probab=91.63  E-value=0.35  Score=35.53  Aligned_cols=46  Identities=13%  Similarity=0.226  Sum_probs=37.8

Q ss_pred             HHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           53 VAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        53 ~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      +.+||+.++++      +. .+.+.++.|...|++..   ..+..|.+|+.+..+.
T Consensus         2 ~~ela~~l~is------~s-tvs~~l~~L~~~glI~r---~~~~~~~lT~~g~~~~   47 (96)
T smart00529        2 TSEIAERLNVS------PP-TVTQMLKKLEKDGLVEY---EPYRGITLTEKGRRLA   47 (96)
T ss_pred             HHHHHHHhCCC------hH-HHHHHHHHHHHCCCEEE---cCCCceEechhHHHHH
Confidence            46899999997      67 89999999999999995   3335789998886544

iron dependent repressor

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=91.41  E-value=1.2  Score=38.43  Aligned_cols=95  Identities=19%  Similarity=0.146  Sum_probs=67.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-----hHHHHhCCCCCCceEEEccCCCCCCC----C--cEEEec
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-----PYVIKNAPSYLGIEHVGGDFFESVPE----A--DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~D~~~~~~~----~--D~i~~~  258 (356)
                      +++..+||-+|+++|....++..-. |+--+..++.     -+.+..|+++++|--+..|...|..-    +  |+|+. 
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa-  232 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA-  232 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence            6688999999999999988887743 5544445543     24678888889999999998886431    2  76655 


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      .+-+  || +..-+--++..-|++||.++|.
T Consensus       233 Dvaq--pd-q~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  233 DVAQ--PD-QARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             cCCC--ch-hhhhhhhhhhhhhccCCeEEEE
Confidence            2222  33 3444455688899999988884

>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor

Probab=91.09  E-value=0.55  Score=30.73  Aligned_cols=33  Identities=24%  Similarity=0.255  Sum_probs=30.0

Q ss_pred             CC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           50 KL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        50 ~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      .. |..+||+.++++      +. .+++.|+.|...|++..
T Consensus        19 ~l~s~~~la~~~~vs------~~-tv~~~l~~L~~~g~i~~   52 (60)
T smart00345       19 KLPSERELAAQLGVS------RT-TVREALSRLEAEGLVQR   52 (60)
T ss_pred             cCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE
Confidence            45 899999999997      77 89999999999999985

>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=90.96  E-value=0.32  Score=27.81  Aligned_cols=31  Identities=16%  Similarity=0.295  Sum_probs=25.4

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcc
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNAL   87 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l   87 (356)
                      |+|-.|||..+|+.      +. -+.|.|..|...|++
T Consensus         2 ~mtr~diA~~lG~t------~E-TVSR~l~~l~~~glI   32 (32)
T PF00325_consen    2 PMTRQDIADYLGLT------RE-TVSRILKKLERQGLI   32 (32)
T ss_dssp             E--HHHHHHHHTS-------HH-HHHHHHHHHHHTTSE
T ss_pred             CcCHHHHHHHhCCc------HH-HHHHHHHHHHHcCCC
Confidence            57889999999997      77 899999999999875

These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....

>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2

Probab=90.92  E-value=1.3  Score=32.53  Aligned_cols=86  Identities=15%  Similarity=0.186  Sum_probs=51.9

Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCc------cCCHHHHHHH
Q 018405          258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGR------ERTKQEYSEL  331 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~t~~e~~~l  331 (356)
                      ..+|=|++.++..++|+.+...-+  |.+++  .+.|..      ..+ ..+- ...-.+|++.      .-.++++.+.
T Consensus         2 mDvLIHYp~~d~~~~l~~La~~t~--~~~if--TfAP~T------~~L-~~m~-~iG~lFP~~dRsp~i~~~~e~~l~~~   69 (97)
T PF07109_consen    2 MDVLIHYPAEDAAQMLAHLASRTR--GSLIF--TFAPRT------PLL-ALMH-AIGKLFPRPDRSPRIYPHREEDLRRA   69 (97)
T ss_pred             cceEeccCHHHHHHHHHHHHHhcc--CcEEE--EECCCC------HHH-HHHH-HHhccCCCCCCCCcEEEeCHHHHHHH
Confidence            345667888999999999998755  67666  222221      011 1110 0111123332      1257899999


Q ss_pred             HHHcCCcceeEEEccCcee---EEEEe
Q 018405          332 AIKAGFKGVNYEYGACNLY---VMEFL  355 (356)
Q Consensus       332 l~~aGf~~~~~~~~~~~~~---vi~~~  355 (356)
                      ++++||++.+......+++   ++|++
T Consensus        70 l~~~g~~~~r~~ris~gFY~S~llE~~   96 (97)
T PF07109_consen   70 LAAAGWRIGRTERISSGFYISQLLEAV   96 (97)
T ss_pred             HHhCCCeeeecccccCcChHHHHhhcc
Confidence            9999999998877765544   45544

1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=90.50  E-value=0.34  Score=42.48  Aligned_cols=96  Identities=21%  Similarity=0.286  Sum_probs=53.6

Q ss_pred             CCceEEEEcCCccHHHHHH---HHhC--CCCeEEEccc-h---HHH---------------------------HhCCCC-
Q 018405          193 HVKKLVDVGGGLGATLNMI---ISKY--PRIKGINYDL-P---YVI---------------------------KNAPSY-  235 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l---~~~~--p~~~~~~~D~-~---~~~---------------------------~~a~~~-  235 (356)
                      -++.|+|+||=.|..+..+   ++.+  ++.++.++|. .   ..-                           +...+. 
T Consensus        74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g  153 (248)
T PF05711_consen   74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG  153 (248)
T ss_dssp             S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred             CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence            4589999999998766543   3333  4566777772 2   211                           111111 


Q ss_pred             ---CCceEEEccCCCCCCCC---cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          236 ---LGIEHVGGDFFESVPEA---DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       236 ---~~v~~~~~D~~~~~~~~---D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                         +++.++.|.+.+..|..   .+.++.-=. ++= +.....|+.++..|.|||.+++-|
T Consensus       154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~-DlY-esT~~aLe~lyprl~~GGiIi~DD  212 (248)
T PF05711_consen  154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDC-DLY-ESTKDALEFLYPRLSPGGIIIFDD  212 (248)
T ss_dssp             TSSTTEEEEES-HHHHCCC-TT--EEEEEE----SH-HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             CCcccEEEECCcchhhhccCCCccEEEEEEec-cch-HHHHHHHHHHHhhcCCCeEEEEeC
Confidence               47899999987744432   332322211 221 447899999999999999999844

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain

Probab=90.31  E-value=1.1  Score=32.92  Aligned_cols=44  Identities=7%  Similarity=0.105  Sum_probs=36.8

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      .+.|..|||+.+|++      +. -+.|.|+.|...|+|...  .+.+.|..+
T Consensus        46 ~~is~~eLa~~~g~s------r~-tVsr~L~~Le~~GlI~r~--~~~~~~~~n   89 (95)
T TIGR01610        46 DRVTATVIAELTGLS------RT-HVSDAIKSLARRRIIFRQ--GMMGIVGVN   89 (95)
T ss_pred             CccCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeeee--cCCceeecC
Confidence            389999999999997      77 899999999999999953  223677665

This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.

>PRK10870 transcriptional repressor MprA; Provisional

Probab=90.14  E-value=0.61  Score=38.73  Aligned_cols=65  Identities=11%  Similarity=0.101  Sum_probs=46.7

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      ..++-.|...+ +++.|..|||+.++++      +. .+.++++-|+..|+|++...+.++   ...+|+.|..+.
T Consensus        58 ~~iL~~L~~~~-~~~it~~eLa~~l~l~------~~-tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~  125 (176)
T PRK10870         58 FMALITLESQE-NHSIQPSELSCALGSS------RT-NATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFL  125 (176)
T ss_pred             HHHHHHHhcCC-CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            34455554321 1478999999999997      67 899999999999999975433332   456787776544

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=90.08  E-value=0.26  Score=38.98  Aligned_cols=103  Identities=19%  Similarity=0.266  Sum_probs=61.4

Q ss_pred             eEEEccc-hHHHHhCCCC-------CCceEEEccCCC---CCCC-C-cEEEecccccCCCh---------HHHHHHHHHH
Q 018405          219 KGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE---SVPE-A-DTILMKWVLSSFDD---------EQSLKLLKNC  276 (356)
Q Consensus       219 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~~-~-D~i~~~~vlh~~~~---------~~~~~~L~~~  276 (356)
                      ++.+||+ +..++.++++       +|++++..+-..   ..++ . |+++++.  -++|.         +.....|+++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a   78 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA   78 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence            4678886 7777766543       578888765544   2444 3 7777653  23332         3467899999


Q ss_pred             HHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCcc--CCHHHHHHHHHHcCCcceeEEEcc
Q 018405          277 YKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRE--RTKQEYSELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       277 ~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~t~~e~~~ll~~aGf~~~~~~~~~  346 (356)
                      .++|+|||.+.|+-....+                       +|..  ....+|.+-|.+..|.+.+..+..
T Consensus        79 l~lL~~gG~i~iv~Y~GH~-----------------------gG~eE~~av~~~~~~L~~~~~~V~~~~~~N  127 (140)
T PF06962_consen   79 LELLKPGGIITIVVYPGHP-----------------------GGKEESEAVEEFLASLDQKEFNVLKYQFIN  127 (140)
T ss_dssp             HHHEEEEEEEEEEE--STC-----------------------HHHHHHHHHHHHHHTS-TTTEEEEEEEESS
T ss_pred             HHhhccCCEEEEEEeCCCC-----------------------CCHHHHHHHHHHHHhCCcceEEEEEEEccC
Confidence            9999999999996543322                       1211  113455555566778887777664

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators

Probab=89.97  E-value=0.6  Score=31.24  Aligned_cols=32  Identities=16%  Similarity=0.166  Sum_probs=29.0

Q ss_pred             CCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           51 LSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        51 ~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      .|..+||+.++++      +. .+++.|..|...|+++.
T Consensus        26 ~~~~~la~~~~is------~~-~v~~~l~~L~~~G~i~~   57 (66)
T cd07377          26 PSERELAEELGVS------RT-TVREALRELEAEGLVER   57 (66)
T ss_pred             CCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEe
Confidence            4599999999997      77 89999999999999984

This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is

>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional

Probab=89.75  E-value=0.49  Score=46.17  Aligned_cols=67  Identities=13%  Similarity=0.206  Sum_probs=52.9

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhhhCC
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNN  111 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~  111 (356)
                      .+..++..|...   ++.|..+||+.++++      +. .+.+.++.|.+.|+++.+... ...|.+|+.|+.+..+.
T Consensus         7 ~e~~vL~~L~~~---~~~s~~eLA~~l~l~------~~-tVt~~i~~Le~kGlV~~~~~~-~~~i~LTeeG~~~~~~g   73 (489)
T PRK04172          7 NEKKVLKALKEL---KEATLEELAEKLGLP------PE-AVMRAAEWLEEKGLVKVEERV-EEVYVLTEEGKKYAEEG   73 (489)
T ss_pred             HHHHHHHHHHhC---CCCCHHHHHHHhCcC------HH-HHHHHHHHHHhCCCEEEEeee-EEEEEECHHHHHHHHhc
Confidence            345566677664   589999999999997      77 899999999999999975322 36799999999665544

>COG3432 Predicted transcriptional regulator [Transcription]

Probab=89.63  E-value=0.39  Score=35.06  Aligned_cols=53  Identities=15%  Similarity=0.251  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      ++....-|.-.++++      .. ..+..++.|+..|++..........|.+|+.|.-|.
T Consensus        30 ~~~~~Tri~y~aNln------y~-~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fl   82 (95)
T COG3432          30 GGIGITRIIYGANLN------YK-RAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFL   82 (95)
T ss_pred             CCCCceeeeeecCcC------HH-HHHHHHHHHHhCCCEEeccCCccceEEEChhHHHHH
Confidence            578888899999997      77 899999999999976642111123799999998443

>COG4190 Predicted transcriptional regulator [Transcription]

Probab=89.32  E-value=0.56  Score=36.17  Aligned_cols=47  Identities=17%  Similarity=0.307  Sum_probs=40.8

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      -.+.|.+.|...   +|.|+.|+|+..|-+      .. .+.|-|+.|...|++..+
T Consensus        65 ~nleLl~~Ia~~---~P~Si~ElAe~vgRd------v~-nvhr~Ls~l~~~GlI~fe  111 (144)
T COG4190          65 RNLELLELIAQE---EPASINELAELVGRD------VK-NVHRTLSTLADLGLIFFE  111 (144)
T ss_pred             hHHHHHHHHHhc---CcccHHHHHHHhCcc------hH-HHHHHHHHHHhcCeEEEe
Confidence            456677888876   699999999999997      67 899999999999999964

>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities

Probab=89.25  E-value=0.62  Score=31.38  Aligned_cols=35  Identities=17%  Similarity=0.212  Sum_probs=29.7

Q ss_pred             CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      ..+ |..+||+.++++      .. -+++-|+.|.+.|+++..
T Consensus        22 ~~lps~~~la~~~~vs------r~-tvr~al~~L~~~g~i~~~   57 (64)
T PF00392_consen   22 DRLPSERELAERYGVS------RT-TVREALRRLEAEGLIERR   57 (64)
T ss_dssp             SBE--HHHHHHHHTS-------HH-HHHHHHHHHHHTTSEEEE
T ss_pred             CEeCCHHHHHHHhccC------Cc-HHHHHHHHHHHCCcEEEE
Confidence            467 999999999997      77 899999999999999963

The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=89.05  E-value=3  Score=39.25  Aligned_cols=100  Identities=21%  Similarity=0.189  Sum_probs=62.4

Q ss_pred             CCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEE---cc-CCC---CC-CC-C-cEEEec
Q 018405          191 FEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVG---GD-FFE---SV-PE-A-DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~---~D-~~~---~~-~~-~-D~i~~~  258 (356)
                      ..+..+||.+|||. |..+..+++...-.++++++. +...+.+++.....++.   .+ +..   .. +. + |+|+-.
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~  261 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA  261 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence            55678999999988 889999999876445777774 66666655442223221   11 111   11 11 3 777653


Q ss_pred             c---------------cccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          259 W---------------VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       259 ~---------------vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      -               +|+-.++  ....++.+.+.++|+|+++++...
T Consensus       262 vg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~G~iv~~g~~  308 (386)
T cd08283         262 VGMEAHGSPLHKAEQALLKLETD--RPDALREAIQAVRKGGTVSIIGVY  308 (386)
T ss_pred             CCCcccccccccccccccccccC--chHHHHHHHHHhccCCEEEEEcCC
Confidence            2               1121122  356788899999999999998643

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=88.96  E-value=0.8  Score=42.91  Aligned_cols=60  Identities=15%  Similarity=0.184  Sum_probs=51.7

Q ss_pred             CCceEEEccCCC---CCCC-C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405          236 LGIEHVGGDFFE---SVPE-A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE  295 (356)
Q Consensus       236 ~~v~~~~~D~~~---~~~~-~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~  295 (356)
                      ++|+++.+++.+   ..|. . |.+++...+..+++++..+.++++.+.++|||+++.-....+.
T Consensus       275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~  339 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP  339 (380)
T ss_pred             CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence            789999998876   2333 3 9999999999999999999999999999999999997766543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress

Probab=88.93  E-value=1.1  Score=31.43  Aligned_cols=49  Identities=8%  Similarity=-0.050  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK  105 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~  105 (356)
                      .|+...+||+.++.+      +. -++.-+..|.++|+|+...-+ .+.|..|..+.
T Consensus        22 ~PVgSk~ia~~l~~s------~a-TIRN~M~~Le~lGlve~~p~~-s~GriPT~~aY   70 (78)
T PF03444_consen   22 EPVGSKTIAEELGRS------PA-TIRNEMADLEELGLVESQPHP-SGGRIPTDKAY   70 (78)
T ss_pred             CCcCHHHHHHHHCCC------hH-HHHHHHHHHHHCCCccCCCCC-CCCCCcCHHHH
Confidence            599999999999997      77 899999999999999842112 36678887776

Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=88.79  E-value=1.3  Score=38.77  Aligned_cols=85  Identities=18%  Similarity=0.149  Sum_probs=65.7

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCCC--CC-cEEEecccccCCChH
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVP--EA-DTILMKWVLSSFDDE  267 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~--~~-D~i~~~~vlh~~~~~  267 (356)
                      +.+.+.-+|+|+-.|+.+-.|.+  .++.++.+|...+.+.....++|+....|-+.-.|  .. |-.+|-.|      +
T Consensus       209 L~~~M~avDLGAcPGGWTyqLVk--r~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV------E  280 (358)
T COG2933         209 LAPGMWAVDLGACPGGWTYQLVK--RNMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV------E  280 (358)
T ss_pred             hcCCceeeecccCCCccchhhhh--cceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh------c
Confidence            44789999999999999999998  57889999987777777777899999999998444  33 76666544      4


Q ss_pred             HHHHHHHHHHHhCCCC
Q 018405          268 QSLKLLKNCYKALPDG  283 (356)
Q Consensus       268 ~~~~~L~~~~~~L~pg  283 (356)
                      +..++-..+...|..|
T Consensus       281 kP~rv~~li~~Wl~nG  296 (358)
T COG2933         281 KPARVAALIAKWLVNG  296 (358)
T ss_pred             CcHHHHHHHHHHHHcc
Confidence            4566666677777654

>PRK06474 hypothetical protein; Provisional

Probab=88.48  E-value=0.82  Score=38.03  Aligned_cols=69  Identities=17%  Similarity=0.282  Sum_probs=50.7

Q ss_pred             HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCcccceeeC--C---Ccceecc
Q 018405           28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD--G---QRLYSLA  101 (356)
Q Consensus        28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~--~---~~~y~~t  101 (356)
                      .+|.--.++.|++.|...+  ++.|+.+|++.+ +++      .. -+.|.|+.|...|+|......  +   +..|+++
T Consensus         6 ~~La~p~R~~Il~~L~~~~--~~~ta~el~~~l~~is------~a-TvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~   76 (178)
T PRK06474          6 EILMHPVRMKICQVLMRNK--EGLTPLELVKILKDVP------QA-TLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAIN   76 (178)
T ss_pred             HhhCCHHHHHHHHHHHhCC--CCCCHHHHHHHhcCCC------HH-HHHHHHHHHHHCCCEEEeecccccCceeEEEEec
Confidence            4556667888899997753  249999999998 575      45 789999999999999964321  1   2357777


Q ss_pred             hhch
Q 018405          102 SVAK  105 (356)
Q Consensus       102 ~~~~  105 (356)
                      +.+.
T Consensus        77 ~~~~   80 (178)
T PRK06474         77 EEDA   80 (178)
T ss_pred             ccee
Confidence            6553

>PRK15431 ferrous iron transport protein FeoC; Provisional

Probab=88.39  E-value=1  Score=31.55  Aligned_cols=42  Identities=14%  Similarity=0.223  Sum_probs=36.6

Q ss_pred             hhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           39 FEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        39 f~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      =|.|...   |-.++.+||.+++++      +. .++-+|..|+..|-+++.
T Consensus         8 Rd~l~~~---gr~s~~~Ls~~~~~p------~~-~VeaMLe~l~~kGkverv   49 (78)
T PRK15431          8 RDLLALR---GRMEAAQISQTLNTP------QP-MINAMLQQLESMGKAVRI   49 (78)
T ss_pred             HHHHHHc---CcccHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEee
Confidence            3566665   589999999999997      77 999999999999999964

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=88.03  E-value=1.1  Score=29.00  Aligned_cols=40  Identities=8%  Similarity=0.322  Sum_probs=31.7

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCC
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYN   85 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g   85 (356)
                      .|+..|.+..  ++.|.++||+.++++      .+ -+++-+..|...|
T Consensus         4 ~il~~L~~~~--~~it~~eLa~~l~vS------~r-Ti~~~i~~L~~~~   43 (55)
T PF08279_consen    4 QILKLLLESK--EPITAKELAEELGVS------RR-TIRRDIKELREWG   43 (55)
T ss_dssp             HHHHHHHHTT--TSBEHHHHHHHCTS-------HH-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHcC--CCcCHHHHHHHhCCC------HH-HHHHHHHHHHHCC
Confidence            3556663332  579999999999998      77 8999999999999

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=87.89  E-value=10  Score=31.15  Aligned_cols=121  Identities=19%  Similarity=0.179  Sum_probs=72.8

Q ss_pred             EEcCCccHHHHHHHHhCC---CCeEEEccc-hHHHHhCCC---------CCCceEE-EccCCC--C-C--CCC--cEEEe
Q 018405          199 DVGGGLGATLNMIISKYP---RIKGINYDL-PYVIKNAPS---------YLGIEHV-GGDFFE--S-V--PEA--DTILM  257 (356)
Q Consensus       199 DiG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~~v~~~-~~D~~~--~-~--~~~--D~i~~  257 (356)
                      =||=|.=.++..|++.++   ++.++.+|. ..+.+.-..         ..++.+. ..|..+  . .  ...  |.|++
T Consensus         2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence            367777788888999887   445677775 433333321         1334433 335444  1 2  112  98888


Q ss_pred             cccccCCC----h-------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHH
Q 018405          258 KWVLSSFD----D-------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQ  326 (356)
Q Consensus       258 ~~vlh~~~----~-------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  326 (356)
                      ++----..    .       +=...+|+.+.+.|+++|.+.|.-..                           +..++.=
T Consensus        82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~---------------------------~~py~~W  134 (166)
T PF10354_consen   82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD---------------------------GQPYDSW  134 (166)
T ss_pred             eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC---------------------------CCCCccc
Confidence            65432200    1       12457889999999999999883221                           1112222


Q ss_pred             HHHHHHHHcCCcceeEEEcc
Q 018405          327 EYSELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       327 e~~~ll~~aGf~~~~~~~~~  346 (356)
                      ++.++.+++||...+..+..
T Consensus       135 ~i~~lA~~~gl~l~~~~~F~  154 (166)
T PF10354_consen  135 NIEELAAEAGLVLVRKVPFD  154 (166)
T ss_pred             cHHHHHHhcCCEEEEEecCC
Confidence            45678888999999887764

>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria

Probab=87.70  E-value=0.8  Score=31.07  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=28.1

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      |-|+.|||+.+|++  +   +. .+.+.|+.|...|+|..
T Consensus        25 ~Pt~rEIa~~~g~~--S---~~-tv~~~L~~Le~kG~I~r   58 (65)
T PF01726_consen   25 PPTVREIAEALGLK--S---TS-TVQRHLKALERKGYIRR   58 (65)
T ss_dssp             ---HHHHHHHHTSS--S---HH-HHHHHHHHHHHTTSEEE
T ss_pred             CCCHHHHHHHhCCC--C---hH-HHHHHHHHHHHCcCccC
Confidence            66999999999995  2   66 89999999999999995

The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=87.67  E-value=1.1  Score=40.43  Aligned_cols=103  Identities=17%  Similarity=0.230  Sum_probs=66.6

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCC----C--CCceEEEccCCCC----CCC-CcEEEe
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPS----Y--LGIEHVGGDFFES----VPE-ADTILM  257 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~--~~v~~~~~D~~~~----~~~-~D~i~~  257 (356)
                      ..+..+|||..++.|.=+..+++... ...++..|. +.-+...+.    .  .++.....|....    .+. .|.|++
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv  162 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV  162 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence            55778999999999999999999877 567888885 443333322    1  4566665665442    122 266654


Q ss_pred             ------cccccCCCh-------HH-------HHHHHHHHHHhC----CCCCEEEEEeccc
Q 018405          258 ------KWVLSSFDD-------EQ-------SLKLLKNCYKAL----PDGGKLLNVNVTI  293 (356)
Q Consensus       258 ------~~vlh~~~~-------~~-------~~~~L~~~~~~L----~pgG~lii~e~~~  293 (356)
                            ..++..-++       ++       -.++|+++.+.+    +|||+++-.....
T Consensus       163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~  222 (283)
T PF01189_consen  163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL  222 (283)
T ss_dssp             ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred             CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence                  122222221       11       347899999999    9999988866543

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain

Probab=87.62  E-value=1  Score=43.28  Aligned_cols=68  Identities=12%  Similarity=0.190  Sum_probs=54.3

Q ss_pred             HHhcCchhHHHhCCCCCC-CCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhhhCC
Q 018405           33 VVELDVFEIISKAGAGAK-LSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNN  111 (356)
Q Consensus        33 a~~lglf~~L~~~~~~~~-~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~  111 (356)
                      +.+..|+..|.+.   ++ .+.++||+.+|++      +. .+.+.+..|.+.|+++.+.+. ...|.+|+.|+....+.
T Consensus         3 ~~e~~iL~~l~~~---~~~~~~~~la~~~g~~------~~-~v~~~~~~L~~kg~v~~~~~~-~~~~~LT~eG~~~l~~G   71 (492)
T PLN02853          3 MAEEALLGALSNN---EEISDSGQFAASHGLD------HN-EVVGVIKSLHGFRYVDAQDIK-RETWVLTEEGKKYAAEG   71 (492)
T ss_pred             hHHHHHHHHHHhc---CCCCCHHHHHHHcCCC------HH-HHHHHHHHHHhCCCEEEEEEE-EEEEEECHHHHHHHHcC
Confidence            4566677888764   34 7999999999997      77 899999999999999976543 48999999999544444

>COG1846 MarR Transcriptional regulators [Transcription]

Probab=87.56  E-value=1.1  Score=34.27  Aligned_cols=68  Identities=16%  Similarity=0.225  Sum_probs=49.4

Q ss_pred             HHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           32 AVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      ...+..++..|...+   +.+..+||+.++++      +. .+.++++-|...|++.+...+.+   -.+.+|+.|..+.
T Consensus        21 t~~q~~~L~~l~~~~---~~~~~~la~~l~i~------~~-~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~   90 (126)
T COG1846          21 TPPQYQVLLALYEAG---GITVKELAERLGLD------RS-TVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELL   90 (126)
T ss_pred             CHHHHHHHHHHHHhC---CCcHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHH
Confidence            445666677777752   44449999999997      77 89999999999999997543322   2467787777444


Q ss_pred             h
Q 018405          109 R  109 (356)
Q Consensus       109 ~  109 (356)
                      .
T Consensus        91 ~   91 (126)
T COG1846          91 E   91 (126)
T ss_pred             H
Confidence            3

>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators

Probab=87.43  E-value=1.4  Score=33.64  Aligned_cols=47  Identities=21%  Similarity=0.352  Sum_probs=37.2

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhC-----CCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      +.-|++.|.+.+  ++.|++||.+++     +++      .. -+-|.|+.|+..|++.+.
T Consensus         3 R~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i~------~~-TVYR~L~~L~~~Gli~~~   54 (116)
T cd07153           3 RLAILEVLLESD--GHLTAEEIYERLRKKGPSIS------LA-TVYRTLELLEEAGLVREI   54 (116)
T ss_pred             HHHHHHHHHhCC--CCCCHHHHHHHHHhcCCCCC------HH-HHHHHHHHHHhCCCEEEE
Confidence            345777887643  589999999998     344      55 789999999999999964

Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.

>COG1733 Predicted transcriptional regulators [Transcription]

Probab=87.07  E-value=1.7  Score=33.53  Aligned_cols=76  Identities=16%  Similarity=0.163  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCC-CCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           13 NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIP-LKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      +++...+.+.+=|..-+|+...         .    |+.-..||...++ ++      +. .|.+-|+.|+..|++.+..
T Consensus        12 ~~~~~l~~ig~kW~~lIl~~L~---------~----g~~RF~eL~r~i~~Is------~k-~Ls~~Lk~Le~~Glv~R~~   71 (120)
T COG1733          12 PVEEALEVIGGKWTLLILRDLF---------D----GPKRFNELRRSIGGIS------PK-MLSRRLKELEEDGLVERVV   71 (120)
T ss_pred             CHHHHHHHHcCccHHHHHHHHh---------c----CCCcHHHHHHHccccC------HH-HHHHHHHHHHHCCCEEeee
Confidence            4677777787777777665443         3    3889999999998 87      77 9999999999999999753


Q ss_pred             eC---CCcceecchhchHhh
Q 018405           92 VD---GQRLYSLASVAKYFV  108 (356)
Q Consensus        92 ~~---~~~~y~~t~~~~~l~  108 (356)
                      ..   ..-.|++|+.|.-|.
T Consensus        72 ~~~~PprveY~LT~~G~~L~   91 (120)
T COG1733          72 YPEEPPRVEYRLTEKGRDLL   91 (120)
T ss_pred             cCCCCceeEEEEhhhHHHHH
Confidence            21   125699998886444

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=86.82  E-value=0.84  Score=41.11  Aligned_cols=72  Identities=18%  Similarity=0.184  Sum_probs=38.3

Q ss_pred             CceEEEEcCCccHH-HHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEc----cCCCCC--C-CC-cEE
Q 018405          194 VKKLVDVGGGLGAT-LNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGG----DFFESV--P-EA-DTI  255 (356)
Q Consensus       194 ~~~vLDiG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~----D~~~~~--~-~~-D~i  255 (356)
                      ..++||||+|.... ..--++. .++++++.|. +..++.|++.        ++|+++..    +++...  + +. |+.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence            56899999998743 3333344 4899999996 7777777542        56877644    344421  1 22 999


Q ss_pred             EecccccCCCh
Q 018405          256 LMKWVLSSFDD  266 (356)
Q Consensus       256 ~~~~vlh~~~~  266 (356)
                      +|+--+|.-.+
T Consensus       182 mCNPPFy~s~~  192 (299)
T PF05971_consen  182 MCNPPFYSSQE  192 (299)
T ss_dssp             EE-----SS--
T ss_pred             ecCCccccChh
Confidence            99888887544

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors

Probab=86.79  E-value=0.72  Score=34.64  Aligned_cols=44  Identities=11%  Similarity=0.265  Sum_probs=33.0

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      -|++.|...   |.++-++||+.+|++      +. -++++|..|...|++...
T Consensus        17 ~Il~~L~~~---~~l~de~la~~~~l~------~~-~vRkiL~~L~~~~lv~~~   60 (105)
T PF02002_consen   17 RILDALLRK---GELTDEDLAKKLGLK------PK-EVRKILYKLYEDGLVSYR   60 (105)
T ss_dssp             HHHHHHHHH-----B-HHHHHHTT-S-------HH-HHHHHHHHHHHHSS-EEE
T ss_pred             HHHHHHHHc---CCcCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCeEEE
Confidence            357778755   589999999999997      77 999999999999999864

Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.

>PRK05638 threonine synthase; Validated

Probab=86.77  E-value=0.96  Score=43.53  Aligned_cols=62  Identities=18%  Similarity=0.314  Sum_probs=47.1

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCC--CCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-CcceecchhchHh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIP--LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-QRLYSLASVAKYF  107 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~--~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-~~~y~~t~~~~~l  107 (356)
                      ++.|+..|.+    ++.+..||++.++  ++      +. .+.+.|+.|...|+++...+.+ .-.|++|+.+..+
T Consensus       373 r~~IL~~L~~----~~~~~~el~~~l~~~~s------~~-~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~~~  437 (442)
T PRK05638        373 KLEILKILSE----REMYGYEIWKALGKPLK------YQ-AVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGRRL  437 (442)
T ss_pred             HHHHHHHHhh----CCccHHHHHHHHcccCC------cc-hHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHHHH
Confidence            4456667776    5899999999998  65      66 8999999999999998532222 2459999888743

>PRK13777 transcriptional regulator Hpr; Provisional

Probab=86.68  E-value=1.5  Score=36.62  Aligned_cols=62  Identities=13%  Similarity=0.066  Sum_probs=46.4

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++..|...   ++.|..+||+.++++      +. -+.++++-|...|+|.+...+++.   ...+|+.|..+.
T Consensus        49 ~iL~~L~~~---~~itq~eLa~~l~l~------~s-Tvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~  113 (185)
T PRK13777         49 HILWIAYHL---KGASISEIAKFGVMH------VS-TAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELL  113 (185)
T ss_pred             HHHHHHHhC---CCcCHHHHHHHHCCC------Hh-hHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            456666665   489999999999997      66 789999999999999975323232   355777776554

>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]

Probab=86.43  E-value=0.95  Score=39.96  Aligned_cols=49  Identities=20%  Similarity=0.372  Sum_probs=40.9

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceee
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV   92 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~   92 (356)
                      +..+.++|.+.|  |-.+-+||.+++|++      .. -+.|.|+-|...|++++..+
T Consensus       197 e~~il~~i~~~G--Gri~Q~eL~r~lgls------kt-TvsR~L~~LEk~GlIe~~K~  245 (258)
T COG2512         197 EKEILDLIRERG--GRITQAELRRALGLS------KT-TVSRILRRLEKRGLIEKEKK  245 (258)
T ss_pred             HHHHHHHHHHhC--CEEeHHHHHHhhCCC------hH-HHHHHHHHHHhCCceEEEEe
Confidence            445677787764  679999999999997      56 89999999999999997643

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=86.32  E-value=6.2  Score=36.66  Aligned_cols=94  Identities=24%  Similarity=0.155  Sum_probs=64.8

Q ss_pred             CceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCC--------C-CCCC-CcEEEecccc
Q 018405          194 VKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFF--------E-SVPE-ADTILMKWVL  261 (356)
Q Consensus       194 ~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~--------~-~~~~-~D~i~~~~vl  261 (356)
                      ..+|+=+||| .|.++..+++.+.-.++++.|. +.-++.|++......+.-.-.        + .... .|+++=..- 
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-  247 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-  247 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence            3499999999 5777788888888889999996 888888876422222211111        1 1122 388765544 


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405          262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE  295 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~  295 (356)
                             ....+..+.++++|||.++++-.....
T Consensus       248 -------~~~~~~~ai~~~r~gG~v~~vGv~~~~  274 (350)
T COG1063         248 -------SPPALDQALEALRPGGTVVVVGVYGGE  274 (350)
T ss_pred             -------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence                   244788899999999999998876554

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=85.83  E-value=23  Score=30.87  Aligned_cols=123  Identities=16%  Similarity=0.083  Sum_probs=63.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----C-CCceEEEccCCCCCCCC-----cEEEecccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----Y-LGIEHVGGDFFESVPEA-----DTILMKWVL  261 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~v~~~~~D~~~~~~~~-----D~i~~~~vl  261 (356)
                      .+++||=||-+--. +.+++-..+..+++++|+ +..++...+    . -.|+.+..|+..+.|+.     |+++.--. 
T Consensus        44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP-  121 (243)
T PF01861_consen   44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP-  121 (243)
T ss_dssp             TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred             cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence            46899999965543 333333445568888886 555444332    1 24889999999987752     99887432 


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCH---HHHHHHHHHcCCc
Q 018405          262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTK---QEYSELAIKAGFK  338 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~---~e~~~ll~~aGf~  338 (356)
                        ++.+-..-++.+..++||..|.........                           +..+.   -++++.+.+.||-
T Consensus       122 --yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~---------------------------~~~s~~~~~~~Q~~l~~~gl~  172 (243)
T PF01861_consen  122 --YTPEGLKLFLSRGIEALKGEGCAGYFGFTH---------------------------KEASPDKWLEVQRFLLEMGLV  172 (243)
T ss_dssp             --SSHHHHHHHHHHHHHTB-STT-EEEEEE-T---------------------------TT--HHHHHHHHHHHHTS--E
T ss_pred             --CCHHHHHHHHHHHHHHhCCCCceEEEEEec---------------------------CcCcHHHHHHHHHHHHHCCcC
Confidence              334667899999999998666333322111                           11122   2556777788888


Q ss_pred             ceeEEEcc
Q 018405          339 GVNYEYGA  346 (356)
Q Consensus       339 ~~~~~~~~  346 (356)
                      +.+++|..
T Consensus       173 i~dii~~F  180 (243)
T PF01861_consen  173 ITDIIPDF  180 (243)
T ss_dssp             EEEEEEEE
T ss_pred             HHHHHhhh
Confidence            88887753

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function

Probab=85.52  E-value=2.2  Score=31.13  Aligned_cols=46  Identities=15%  Similarity=0.199  Sum_probs=38.4

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      .+.|+..|.+.   ||=.+.-||..++++      .. .++..|+-|...|+|++.
T Consensus         9 ~~~IL~hl~~~---~~Dy~k~ia~~l~~~------~~-~v~~~l~~Le~~GLler~   54 (92)
T PF10007_consen    9 DLKILQHLKKA---GPDYAKSIARRLKIP------LE-EVREALEKLEEMGLLERV   54 (92)
T ss_pred             HHHHHHHHHHH---CCCcHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeEEe
Confidence            45567777776   578889999999997      67 899999999999999953

>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional

Probab=85.44  E-value=1.3  Score=35.83  Aligned_cols=45  Identities=11%  Similarity=0.216  Sum_probs=39.7

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      .+..|.+.|...   +..|..+||+++|++      +. .+++=++.|...|++.
T Consensus        10 ~D~~Il~~Lq~d---~R~s~~eiA~~lglS------~~-tV~~Ri~rL~~~GvI~   54 (153)
T PRK11179         10 LDRGILEALMEN---ARTPYAELAKQFGVS------PG-TIHVRVEKMKQAGIIT   54 (153)
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCee
Confidence            567788889886   589999999999998      77 8888899999999998

>PRK10742 putative methyltransferase; Provisional

Probab=85.05  E-value=1.9  Score=37.70  Aligned_cols=44  Identities=23%  Similarity=0.234  Sum_probs=34.1

Q ss_pred             HHHHHHhcCCCCCc--eEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH
Q 018405          182 EKVLESYKGFEHVK--KLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV  228 (356)
Q Consensus       182 ~~~~~~~~~~~~~~--~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~  228 (356)
                      ..+++.+. +++..  +|||.=+|+|..+..++.+  +++++.++. |.+
T Consensus        76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~v  122 (250)
T PRK10742         76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVV  122 (250)
T ss_pred             cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHH
Confidence            35566665 66655  9999999999999999986  667888885 543

>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Probab=85.02  E-value=1.2  Score=37.79  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=32.4

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      .+.|++|+|+++|++      .. -.+|.|.+|++.|++..+
T Consensus       172 ~~~Taeela~~~giS------Rv-TaRRYLeyl~~~~~l~a~  206 (224)
T COG4565         172 QELTAEELAQALGIS------RV-TARRYLEYLVSNGILEAE  206 (224)
T ss_pred             CccCHHHHHHHhCcc------HH-HHHHHHHHHHhcCeeeEE
Confidence            589999999999997      77 899999999999999965

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=84.90  E-value=1.9  Score=38.15  Aligned_cols=77  Identities=19%  Similarity=0.217  Sum_probs=49.7

Q ss_pred             HHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCE
Q 018405          207 TLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGK  285 (356)
Q Consensus       207 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~  285 (356)
                      ++..|.++.++.+++++|. +..++.+.+.+-+.-...+ .+...++|+|+++-     |-.....+|+++...+++|+.
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~i   74 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGAI   74 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTSE
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCcE
Confidence            3567888889999999996 7777777554444433333 22334459988863     445678999999998888876


Q ss_pred             EEEE
Q 018405          286 LLNV  289 (356)
Q Consensus       286 lii~  289 (356)
                      +.=+
T Consensus        75 v~Dv   78 (258)
T PF02153_consen   75 VTDV   78 (258)
T ss_dssp             EEE-
T ss_pred             EEEe
Confidence            5543

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF13730 HTH_36: Helix-turn-helix domain

Probab=84.84  E-value=1.4  Score=28.51  Aligned_cols=29  Identities=10%  Similarity=0.205  Sum_probs=27.0

Q ss_pred             CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcc
Q 018405           52 SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNAL   87 (356)
Q Consensus        52 t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l   87 (356)
                      |.+.||+.+|++      .. -+.+.++.|+..|++
T Consensus        27 S~~~la~~~g~s------~~-Tv~~~i~~L~~~G~I   55 (55)
T PF13730_consen   27 SQETLAKDLGVS------RR-TVQRAIKELEEKGLI   55 (55)
T ss_pred             CHHHHHHHHCcC------HH-HHHHHHHHHHHCcCC
Confidence            899999999997      77 899999999999986

>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A)

Probab=84.75  E-value=1.1  Score=33.39  Aligned_cols=47  Identities=17%  Similarity=0.279  Sum_probs=35.2

Q ss_pred             hcCchhHHHh-CCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405           35 ELDVFEIISK-AGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus        35 ~lglf~~L~~-~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      +-.|++.|.. ...+.++++++|+++++++      .. .++..++.|...|+|-
T Consensus        49 ~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~~------~~-~v~~al~~L~~eG~IY   96 (102)
T PF08784_consen   49 QDKVLNFIKQQPNSEEGVHVDEIAQQLGMS------EN-EVRKALDFLSNEGHIY   96 (102)
T ss_dssp             HHHHHHHHHC----TTTEEHHHHHHHSTS-------HH-HHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHHhCcC------HH-HHHHHHHHHHhCCeEe
Confidence            4445555554 1113579999999999997      66 8999999999999997

RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.

>COG1378 Predicted transcriptional regulators [Transcription]

Probab=84.57  E-value=1.7  Score=38.13  Aligned_cols=63  Identities=14%  Similarity=0.098  Sum_probs=47.2

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      +..++-+|-..   |+.|+.||++.+|++      .. .+-.+|+.|...|++...+ ..+..|+.-+....+.
T Consensus        18 Ea~vY~aLl~~---g~~tA~eis~~sgvP------~~-kvY~vl~sLe~kG~v~~~~-g~P~~y~av~p~~~i~   80 (247)
T COG1378          18 EAKVYLALLCL---GEATAKEISEASGVP------RP-KVYDVLRSLEKKGLVEVIE-GRPKKYRAVPPEELIE   80 (247)
T ss_pred             HHHHHHHHHHh---CCccHHHHHHHcCCC------ch-hHHHHHHHHHHCCCEEeeC-CCCceEEeCCHHHHHH
Confidence            44455666665   699999999999997      55 7899999999999999642 3357888765554333

>COG1497 Predicted transcriptional regulator [Transcription]

Probab=84.49  E-value=2.2  Score=36.77  Aligned_cols=46  Identities=13%  Similarity=0.278  Sum_probs=41.3

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK  105 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~  105 (356)
                      .....|||..+|+.      +. .+...++-|+..|++.+   .+.++|..|..|.
T Consensus        25 ~v~q~eIA~~lgiT------~Q-aVsehiK~Lv~eG~i~~---~gR~~Y~iTkkG~   70 (260)
T COG1497          25 RVKQKEIAKKLGIT------LQ-AVSEHIKELVKEGLIEK---EGRGEYEITKKGA   70 (260)
T ss_pred             CCCHHHHHHHcCCC------HH-HHHHHHHHHHhccceee---cCCeeEEEehhHH
Confidence            68899999999998      88 99999999999999995   3447999999987

>PF14394 DUF4423: Domain of unknown function (DUF4423)

Probab=84.34  E-value=1.9  Score=35.55  Aligned_cols=44  Identities=16%  Similarity=0.209  Sum_probs=37.9

Q ss_pred             CCHHHHHHhC--CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           51 LSVAEIVAQI--PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        51 ~t~~ela~~~--~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      .+.++||+.+  +++      .. -++.-|+.|...|+++   ++++|.|..|..+
T Consensus        40 ~d~~~iak~l~p~is------~~-ev~~sL~~L~~~gli~---k~~~g~y~~t~~~   85 (171)
T PF14394_consen   40 PDPEWIAKRLRPKIS------AE-EVRDSLEFLEKLGLIK---KDGDGKYVQTDKS   85 (171)
T ss_pred             CCHHHHHHHhcCCCC------HH-HHHHHHHHHHHCCCeE---ECCCCcEEEecce
Confidence            3899999999  997      66 8999999999999999   4556899988654

>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional

Probab=84.18  E-value=2.1  Score=41.32  Aligned_cols=68  Identities=9%  Similarity=0.187  Sum_probs=53.0

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhhhCC
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNN  111 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~  111 (356)
                      .+..|+..|.+..  +..+..+||+.+|++      +. .+.+.+..|.+.|+++.+... ...|.+|+.|+....+.
T Consensus         7 ~e~~iL~~l~~~~--~~~~~~~la~~~~~~------~~-~v~~~~~~L~~kg~v~~~~~~-~~~~~LT~eG~~~~~~G   74 (494)
T PTZ00326          7 EENTILSKLESEN--EIVNSLALAESLNID------HQ-KVVGAIKSLESANYITTEMKK-SNTWTLTEEGEDYLKNG   74 (494)
T ss_pred             HHHHHHHHHHhcC--CCCCHHHHHHHcCCC------HH-HHHHHHHHHHhCCCEEEEEEE-EEEEEECHHHHHHHHcC
Confidence            4455667776521  378999999999997      77 899999999999999976543 48999999999544444

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=84.03  E-value=6.4  Score=35.31  Aligned_cols=86  Identities=22%  Similarity=0.138  Sum_probs=55.3

Q ss_pred             ceEEEEcCC--ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEE-ccC-CCCCCCCcEEEecccccCCChHHH
Q 018405          195 KKLVDVGGG--LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVG-GDF-FESVPEADTILMKWVLSSFDDEQS  269 (356)
Q Consensus       195 ~~vLDiG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-~D~-~~~~~~~D~i~~~~vlh~~~~~~~  269 (356)
                      .+|+=+|.|  -|.++..+.++.+...+++.|. ....+.+... ++.... .+. ......+|+|+.+-     |-...
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~d~~~~~~~~~~~~~aD~Vivav-----Pi~~~   77 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVIDELTVAGLAEAAAEADLVIVAV-----PIEAT   77 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-CcccccccchhhhhcccCCEEEEec-----cHHHH
Confidence            567778877  4667777777778888899986 5555555433 222221 222 22344459998864     33557


Q ss_pred             HHHHHHHHHhCCCCCEE
Q 018405          270 LKLLKNCYKALPDGGKL  286 (356)
Q Consensus       270 ~~~L~~~~~~L~pgG~l  286 (356)
                      ..+++++...|+||..+
T Consensus        78 ~~~l~~l~~~l~~g~iv   94 (279)
T COG0287          78 EEVLKELAPHLKKGAIV   94 (279)
T ss_pred             HHHHHHhcccCCCCCEE
Confidence            88999988888887544

>PRK11169 leucine-responsive transcriptional regulator; Provisional

Probab=83.61  E-value=1.4  Score=36.01  Aligned_cols=46  Identities=13%  Similarity=0.213  Sum_probs=40.2

Q ss_pred             HHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405           33 VVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus        33 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      ..+..|+..|.+.   +..|..+||+++|++      +. .+.+=++-|...|++.
T Consensus        14 ~~D~~IL~~Lq~d---~R~s~~eiA~~lglS------~~-tv~~Ri~rL~~~GvI~   59 (164)
T PRK11169         14 RIDRNILNELQKD---GRISNVELSKRVGLS------PT-PCLERVRRLERQGFIQ   59 (164)
T ss_pred             HHHHHHHHHhccC---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeE
Confidence            3677888889886   689999999999998      77 8888899999999998

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=83.52  E-value=8.6  Score=37.64  Aligned_cols=94  Identities=20%  Similarity=0.280  Sum_probs=60.5

Q ss_pred             CCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC--------------C--------
Q 018405          193 HVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE--------------S--------  248 (356)
Q Consensus       193 ~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~--------------~--------  248 (356)
                      ++.+|+=+|||. |..+...++... .+++++|. +...+.++.. +.+++..|..+              +        
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            578999999995 556666777664 58999995 7777777654 33332211110              1        


Q ss_pred             ----CCCCcEEEecccccCCChHHHHHH-HHHHHHhCCCCCEEEEEec
Q 018405          249 ----VPEADTILMKWVLSSFDDEQSLKL-LKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       249 ----~~~~D~i~~~~vlh~~~~~~~~~~-L~~~~~~L~pgG~lii~e~  291 (356)
                          ..+.|+|+..-..-.   .....+ .+.+.+.++|||.++.+-.
T Consensus       242 ~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        242 FAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                022498887654322   112344 5999999999999888754

>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C

Probab=83.46  E-value=1.1  Score=28.23  Aligned_cols=41  Identities=10%  Similarity=0.189  Sum_probs=22.8

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCc
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNA   86 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~   86 (356)
                      .++.+...+.+     +.|..+||+.+|++      +. -+.+|++.....|+
T Consensus         6 ~R~~ii~l~~~-----G~s~~~ia~~lgvs------~~-Tv~~w~kr~~~~G~   46 (50)
T PF13384_consen    6 RRAQIIRLLRE-----GWSIREIAKRLGVS------RS-TVYRWIKRYREEGL   46 (50)
T ss_dssp             ----HHHHHHH-----T--HHHHHHHHTS-------HH-HHHHHHT-------
T ss_pred             HHHHHHHHHHC-----CCCHHHHHHHHCcC------HH-HHHHHHHHcccccc
Confidence            34455666665     68999999999997      77 89999987766663

>TIGR01321 TrpR trp operon repressor, proteobacterial

Probab=83.28  E-value=4.6  Score=29.53  Aligned_cols=43  Identities=14%  Similarity=0.130  Sum_probs=33.3

Q ss_pred             HHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHh
Q 018405           29 AMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLV   82 (356)
Q Consensus        29 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~   82 (356)
                      .-..+.+.||+..|.+    ++.|-.|||+.+|++      .. .+.|+=+.|.
T Consensus        38 ~~~l~~R~~i~~~Ll~----~~~tQrEIa~~lGiS------~a-tIsR~sn~lk   80 (94)
T TIGR01321        38 REDLGDRIRIVNELLN----GNMSQREIASKLGVS------IA-TITRGSNNLK   80 (94)
T ss_pred             HHHHHHHHHHHHHHHh----CCCCHHHHHHHhCCC------hh-hhhHHHhhcc
Confidence            3445678999998877    489999999999997      55 6677666554

This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.

>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species

Probab=83.17  E-value=1.9  Score=33.98  Aligned_cols=46  Identities=11%  Similarity=0.192  Sum_probs=37.0

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      |++|.+|||-+.|++      .+ .+-.-|.++++-|-|.+...++.=+|+++
T Consensus         5 Ga~T~eELA~~FGvt------tR-kvaStLa~~ta~Grl~Rv~q~gkfRy~iP   50 (155)
T PF07789_consen    5 GAKTAEELAGKFGVT------TR-KVASTLAMVTATGRLIRVNQNGKFRYCIP   50 (155)
T ss_pred             CcccHHHHHHHhCcc------hh-hhHHHHHHHHhcceeEEecCCCceEEeCC
Confidence            799999999999997      77 88899999999999997543333345553

The region in question is approximately 150 amino acid residues long.

>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication

Probab=82.97  E-value=1.7  Score=35.67  Aligned_cols=45  Identities=13%  Similarity=0.161  Sum_probs=38.2

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      -.|..+||+.+|++      .. -+.|.+..|...+++.+   ...|.|.++|.-
T Consensus        75 ~~t~~~ia~~l~iS------~~-Tv~r~ik~L~e~~iI~k---~~~G~Y~iNP~~  119 (165)
T PF05732_consen   75 VATQKEIAEKLGIS------KP-TVSRAIKELEEKNIIKK---IRNGAYMINPNF  119 (165)
T ss_pred             EeeHHHHHHHhCCC------HH-HHHHHHHHHHhCCcEEE---ccCCeEEECcHH
Confidence            35899999999997      66 79999999999999994   345899998754

; GO: 0006260 DNA replication, 0006276 plasmid maintenance

>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed

Probab=82.81  E-value=1.9  Score=41.14  Aligned_cols=43  Identities=26%  Similarity=0.237  Sum_probs=36.5

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      .|.|.++|+++++++      +. .++++|+.|...|++.   +.+++.|.+.
T Consensus       309 ~~~t~~~La~~l~~~------~~-~v~~iL~~L~~agLI~---~~~~g~~~l~  351 (412)
T PRK04214        309 KALDVDEIRRLEPMG------YD-ELGELLCELARIGLLR---RGERGQWVLA  351 (412)
T ss_pred             CCCCHHHHHHHhCCC------HH-HHHHHHHHHHhCCCeE---ecCCCceEec
Confidence            589999999999997      77 9999999999999998   3434667654

>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term

Probab=82.69  E-value=2  Score=32.87  Aligned_cols=35  Identities=6%  Similarity=0.071  Sum_probs=32.3

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      .+.|++|||+.+.++      ++ .++.+|+.|...|+|+-.
T Consensus        18 ~~vtl~elA~~l~cS------~R-n~r~lLkkm~~~gWi~W~   52 (115)
T PF12793_consen   18 VEVTLDELAELLFCS------RR-NARTLLKKMQEEGWITWQ   52 (115)
T ss_pred             cceeHHHHHHHhCCC------HH-HHHHHHHHHHHCCCeeee
Confidence            478999999999998      88 999999999999999964

>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A

Probab=82.64  E-value=1.6  Score=30.25  Aligned_cols=41  Identities=15%  Similarity=0.223  Sum_probs=34.6

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      +.|-++||..+|++      +. .+.+.|+.|...|++..   . .+.+...
T Consensus        28 ~lt~~~iA~~~g~s------r~-tv~r~l~~l~~~g~I~~---~-~~~i~I~   68 (76)
T PF13545_consen   28 PLTQEEIADMLGVS------RE-TVSRILKRLKDEGIIEV---K-RGKIIIL   68 (76)
T ss_dssp             ESSHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEE---E-TTEEEES
T ss_pred             cCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE---c-CCEEEEC
Confidence            78999999999998      77 89999999999999994   3 2555543

...

>COG1510 Predicted transcriptional regulators [Transcription]

Probab=82.54  E-value=1.5  Score=35.69  Aligned_cols=39  Identities=21%  Similarity=0.331  Sum_probs=33.4

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG   94 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~   94 (356)
                      .|+|++||++++|++      .. .+..-++-|...|++.+..++|
T Consensus        40 ~Pmtl~Ei~E~lg~S------ks-~vS~~lkkL~~~~lV~~~~~~G   78 (177)
T COG1510          40 KPLTLDEIAEALGMS------KS-NVSMGLKKLQDWNLVKKVFEKG   78 (177)
T ss_pred             CCccHHHHHHHHCCC------cc-hHHHHHHHHHhcchHHhhhccC
Confidence            599999999999998      55 7888899999999999765444

>COG1522 Lrp Transcriptional regulators [Transcription]

Probab=82.53  E-value=1.9  Score=34.64  Aligned_cols=45  Identities=16%  Similarity=0.353  Sum_probs=39.3

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      .+..|.+.|.+.   +..|..+||+++|++      +. .+.+-++-|...|++.
T Consensus         9 ~D~~IL~~L~~d---~r~~~~eia~~lglS------~~-~v~~Ri~~L~~~GiI~   53 (154)
T COG1522           9 IDRRILRLLQED---ARISNAELAERVGLS------PS-TVLRRIKRLEEEGVIK   53 (154)
T ss_pred             HHHHHHHHHHHh---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCcee
Confidence            456678888886   589999999999998      77 8889999999999999

>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2

Probab=82.46  E-value=2  Score=28.80  Aligned_cols=42  Identities=24%  Similarity=0.373  Sum_probs=33.6

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +++.|-..   |..|+.+|++.++++      +. .++.-|-.|.-.|++.+
T Consensus        18 V~~~Ll~~---G~ltl~~i~~~t~l~------~~-~Vk~~L~~LiQh~~v~y   59 (62)
T PF08221_consen   18 VGEVLLSR---GRLTLREIVRRTGLS------PK-QVKKALVVLIQHNLVQY   59 (62)
T ss_dssp             HHHHHHHC----SEEHHHHHHHHT--------HH-HHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHc---CCcCHHHHHHHhCCC------HH-HHHHHHHHHHHcCCeee
Confidence            45666665   689999999999997      77 89999999999999985

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=82.40  E-value=7.1  Score=35.48  Aligned_cols=90  Identities=17%  Similarity=0.034  Sum_probs=49.2

Q ss_pred             CceEEEEcCCc-c-HHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCChHHHH
Q 018405          194 VKKLVDVGGGL-G-ATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSL  270 (356)
Q Consensus       194 ~~~vLDiG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~  270 (356)
                      ..+|.=||+|. | .++..+.+.....+++++|. +...+.+....-......+..+...++|+|+++--     .....
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~   80 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG   80 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence            35788899885 3 34444444322246788885 55555544322111111121112234588877643     33456


Q ss_pred             HHHHHHHHhCCCCCEEEE
Q 018405          271 KLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       271 ~~L~~~~~~L~pgG~lii  288 (356)
                      .+++.+...++||..++.
T Consensus        81 ~v~~~l~~~l~~~~iv~d   98 (307)
T PRK07502         81 AVAAEIAPHLKPGAIVTD   98 (307)
T ss_pred             HHHHHHHhhCCCCCEEEe
Confidence            777888888888875544

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=82.39  E-value=3.7  Score=36.36  Aligned_cols=36  Identities=14%  Similarity=0.179  Sum_probs=31.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-----CCCeEEEccch
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-----PRIKGINYDLP  226 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~~  226 (356)
                      +.+...++|+|||.|.++..+....     +...++.+|..
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~   56 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA   56 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence            5677899999999999999999988     56789999963

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>COG3413 Predicted DNA binding protein [General function prediction only]

Probab=81.89  E-value=2.2  Score=36.69  Aligned_cols=33  Identities=6%  Similarity=0.300  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCC
Q 018405           25 VLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLK   63 (356)
Q Consensus        25 ~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~   63 (356)
                      ..-.+|+.|.+.|-||. .+     ..++.|||+.+|++
T Consensus       159 rQ~~vL~~A~~~GYFd~-PR-----~~~l~dLA~~lGIS  191 (215)
T COG3413         159 RQLEVLRLAYKMGYFDY-PR-----RVSLKDLAKELGIS  191 (215)
T ss_pred             HHHHHHHHHHHcCCCCC-Cc-----cCCHHHHHHHhCCC
Confidence            34578999999999999 44     68999999999998

>PRK13699 putative methylase; Provisional

Probab=80.89  E-value=6.9  Score=33.91  Aligned_cols=76  Identities=17%  Similarity=0.189  Sum_probs=0.0

Q ss_pred             ceEEEccCCC---CCCCC--cEEEec-------------ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCC
Q 018405          238 IEHVGGDFFE---SVPEA--DTILMK-------------WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN  299 (356)
Q Consensus       238 v~~~~~D~~~---~~~~~--D~i~~~-------------~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~  299 (356)
                      +++..+|..+   ..|+.  |+|+..             ..-.....+-....+++++++|||||.+++           
T Consensus         2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i-----------   70 (227)
T PRK13699          2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS-----------   70 (227)
T ss_pred             CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE-----------


Q ss_pred             chhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405          300 SATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE  343 (356)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  343 (356)
                                         .........+...++++||.+...+
T Consensus        71 -------------------f~~~~~~~~~~~al~~~GF~l~~~I   95 (227)
T PRK13699         71 -------------------FYGWNRVDRFMAAWKNAGFSVVGHL   95 (227)
T ss_pred             -------------------EeccccHHHHHHHHHHCCCEEeeEE

>PF13518 HTH_28: Helix-turn-helix domain

Probab=80.44  E-value=2.7  Score=26.60  Aligned_cols=30  Identities=17%  Similarity=0.098  Sum_probs=26.5

Q ss_pred             CCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcc
Q 018405           51 LSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNAL   87 (356)
Q Consensus        51 ~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l   87 (356)
                      .|+.++|+.+|++      +. -+.+|++.....|+-
T Consensus        13 ~s~~~~a~~~gis------~~-tv~~w~~~y~~~G~~   42 (52)
T PF13518_consen   13 ESVREIAREFGIS------RS-TVYRWIKRYREGGIE   42 (52)
T ss_pred             CCHHHHHHHHCCC------Hh-HHHHHHHHHHhcCHH
Confidence            4999999999997      77 899999999888853

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=80.38  E-value=9.5  Score=34.11  Aligned_cols=122  Identities=11%  Similarity=0.076  Sum_probs=70.4

Q ss_pred             eEEEEcCCccHHHHHHHHhCCCCe-EEEccc-hHHHHhCCCC-CCceEEEccCCC-C----CCCCcEEEecccccCCChH
Q 018405          196 KLVDVGGGLGATLNMIISKYPRIK-GINYDL-PYVIKNAPSY-LGIEHVGGDFFE-S----VPEADTILMKWVLSSFDDE  267 (356)
Q Consensus       196 ~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~----~~~~D~i~~~~vlh~~~~~  267 (356)
                      +++|+-||.|.+...+....  .+ +..+|. +..++..+.+ +.. +..+|+.+ .    .+..|+++...-...++..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a   78 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA   78 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence            69999999999998888753  44 456775 6655554433 222 56677766 2    1223999876655544321


Q ss_pred             --------HHHHHHHHHHH---hCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018405          268 --------QSLKLLKNCYK---ALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAG  336 (356)
Q Consensus       268 --------~~~~~L~~~~~---~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG  336 (356)
                              ....++..+.+   .++|  +++++|.+..-.             .        ........+|.+.|++.|
T Consensus        79 g~~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~g~~-------------~--------~~~~~~~~~i~~~l~~~G  135 (275)
T cd00315          79 GKRKGFEDTRGTLFFEIIRILKEKKP--KYFLLENVKGLL-------------T--------HDNGNTLKVILNTLEELG  135 (275)
T ss_pred             hhcCCCCCchHHHHHHHHHHHHhcCC--CEEEEEcCcchh-------------c--------cCchHHHHHHHHHHHhCC
Confidence                    11223333333   3344  566777664311             0        011124678888899999


Q ss_pred             CcceeEE
Q 018405          337 FKGVNYE  343 (356)
Q Consensus       337 f~~~~~~  343 (356)
                      |.+...+
T Consensus       136 Y~~~~~~  142 (275)
T cd00315         136 YNVYWKL  142 (275)
T ss_pred             cEEEEEE
Confidence            9875443

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PRK09775 putative DNA-binding transcriptional regulator; Provisional

Probab=80.06  E-value=2.3  Score=40.78  Aligned_cols=54  Identities=22%  Similarity=0.223  Sum_probs=40.6

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      |...|..    ||.|+.||++.+|++      .. .+.+.|+.|  .|+|...++...-+|+++...
T Consensus         5 ~~~~L~~----g~~~~~eL~~~l~~s------q~-~~s~~L~~L--~~~V~~~~~gr~~~Y~l~~~~   58 (442)
T PRK09775          5 LTTLLLQ----GPLSAAELAARLGVS------QA-TLSRLLAAL--GDQVVRFGKARATRYALLRPL   58 (442)
T ss_pred             HHHHHhc----CCCCHHHHHHHhCCC------HH-HHHHHHHHh--hcceeEeccCceEEEEecccc
Confidence            4456665    699999999999998      66 899999999  888886543333567776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		2e-94
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		9e-87
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		1e-77
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		7e-60
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		6e-50
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		4e-22
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		7e-22
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		9e-22
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		9e-22
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		1e-20
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		1e-19
3lst_A	348	Crystal Structure Of Calo1, Methyltransferase In Ca		2e-10
3gwz_A	369	Structure Of The Mitomycin 7-O-Methyltransferase Mm		1e-09
2ip2_A	334	Structure Of The Pyocyanin Biosynthetic Protein Phz		5e-09
1qzz_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		9e-09
1xds_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		2e-08
4a6d_A	353	Crystal Structure Of Human N-Acetylserotonin Methyl		3e-06
1tw2_A	360	Crystal Structure Of Carminomycin-4-O-Methyltransfe		3e-06
3i53_A	332	Crystal Structure Of An O-Methyltransferase (Ncsb1)		5e-05

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  342 bits (876), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 173/354 (48%), Positives = 235/354 (66%), Gaps = 11/354 (3%)
Query: 8   EEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNP 67
           +EE N F  AM+LA A VLP  + + +ELD+ EII+KAG GA++S  EI +Q+P    NP
Sbjct: 16  DEEANLF--AMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPT--TNP 71
Query: 68  EAAAMMLDRVLRLLVSYNALHCSF---VDG--QRLYSLASVAKYFVRNNQNGASLRPYMA 122
           +A  +MLDR+LRLL  Y  L CS     DG  QRLY LA+VAKY V+N ++G S+     
Sbjct: 72  DAP-VMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKN-EDGVSISALNL 129
Query: 123 LRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVME 182
           +  DKV M+ W+ LKD +L+GG  FNKA+GM+ ++Y G D RFN VFN GM  H+ + M+
Sbjct: 130 MNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMK 189
Query: 183 KVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVG 242
           K+LE+Y GFE             A +N I+SKYP IKGIN+DLP+VI++APSY G+EHVG
Sbjct: 190 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVG 249
Query: 243 GDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSAT 302
           GD F S+P+AD + MKW+   + DE  LK LKNCY+ALPD GK++     +P  P++S  
Sbjct: 250 GDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLA 309
Query: 303 SREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
           ++ +  +D I L   P G+ERT++E+ +LA  AGF+G      A N Y+MEFLK
Sbjct: 310 TKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLK 363

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  317 bits (811), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 166/356 (46%), Positives = 227/356 (63%), Gaps = 12/356 (3%)
Query: 7   QEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKA-GAGAKLSVAEIVAQIPLKDN 65
            +EE N F  AM+LA A VLP A+ A +ELDV EI++K+      +S AEI AQ+P    
Sbjct: 17  SDEEANLF--AMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLP--TT 72
Query: 66  NPEAAAMMLDRVLRLLVSYNALHCSFVD-----GQRLYSLASVAKYFVRNNQNGASLRPY 120
           NPEA  +MLDRVLRLL SY+ +  +  +      +RLY LA V K F+  N++G SL P+
Sbjct: 73  NPEAP-VMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCK-FLTKNEDGVSLAPF 130
Query: 121 MALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVV 180
           + L  DKV ++ WF LKD ILEGG  FNKA+GM+I+DY G D R N VFN GM  ++ + 
Sbjct: 131 LLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTIT 190
Query: 181 MEKVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEH 240
           M+K+LE Y GFE             A  +MI++KYP I  IN+DLP+VI++AP++ G+EH
Sbjct: 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEH 250
Query: 241 VGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENS 300
           +GGD F+ VP+ D I +KW+   + DE  LKLLKNCY ALPD GK++     +P  P+ S
Sbjct: 251 LGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPS 310
Query: 301 ATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356
             ++ +   D + L   P G+ERT++E+  LA+ +GF+G      A N YVMEFLK
Sbjct: 311 IATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  286 bits (731), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 154/361 (42%), Positives = 215/361 (59%), Gaps = 13/361 (3%)
Query: 1   MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI 60
           MA+ AD++       +A++LA + VLP  +   +EL + EI+  AG G  L+  E+ A++
Sbjct: 12  MAASADEDA----CMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKL 66
Query: 61  PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ-----RLYSLASVAKYFVRNNQNGA 115
           P    NPEA  M +DR+LRLL SYN + C   +G+     R Y  A V K F+  N++G 
Sbjct: 67  P-SAANPEAPDM-VDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCK-FLTPNEDGV 123
Query: 116 SLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLG 175
           S+     +  DKV M+ W+ LKD +L+GG  FNKA+GMS ++Y G D RFN VFN GM  
Sbjct: 124 SMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKN 183
Query: 176 HTCVVMEKVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSY 235
           H+ ++ +K+LE Y GFE             AT+  I + YP IKG+N+DLP+VI  AP +
Sbjct: 184 HSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQF 243
Query: 236 LGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295
            G+ HVGGD F+ VP  DTILMKW+L  + D+    LLKNCY ALP  GK++ V   +P 
Sbjct: 244 PGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV 303
Query: 296 VPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFL 355
            PE + +S+ +  +D I L   P GRER ++E+  LA  AGF GV   Y   N + +EF 
Sbjct: 304 NPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFT 363
Query: 356 K 356
           K
Sbjct: 364 K 364

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score =  227 bits (579), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 207/364 (56%), Gaps = 12/364 (3%)
Query: 1   MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGA-GAKLSVAEIVAQ 59
           +++ ++Q E++   S AM L   +V PA ++A ++L++FEII+KA   GA +S +EI ++
Sbjct: 13  ISATSEQTEDSACLS-AMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASK 71
Query: 60  IPLKDNNPEAAAMMLDRVLRLLVSYNALHCS---FVDG--QRLYSLASVAKYFVRNNQNG 114
           +P    + +     LDR+LRLL SY+ L  +     DG  +R+Y L+ V KY V +   G
Sbjct: 72  LPASTQHSDLPNR-LDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRG 130
Query: 115 ASLRPYMALRLDKVPMDYWFRLKDQIL-EGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGM 173
             L  +         +  W   K+ ++ E    F   HG++ Y++MG D + N +FN  M
Sbjct: 131 Y-LASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSM 189
Query: 174 LGHTCVVMEKVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAP 233
           +      M+++LE Y GFE               L +IISKYP IKGIN+DLP VI+NAP
Sbjct: 190 VDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 249
Query: 234 SYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293
              GIEHVGGD F SVP+ D +++K V  ++ DE+ ++ L NC+KAL   GK++ V   +
Sbjct: 250 PLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL 309
Query: 294 PEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACN-LYVM 352
           PE P  S  S+ +S LD + +F    GRERT+++Y +L+  +GF        A N L VM
Sbjct: 310 PEEPNTSEESKLVSTLDNL-MFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVM 368
Query: 353 EFLK 356
           EF K
Sbjct: 369 EFYK 372

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score =  194 bits (493), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 130/364 (35%), Positives = 196/364 (53%), Gaps = 12/364 (3%)
Query: 1   MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGA-GAKLSVAEIVAQ 59
           +++ ++Q E++   S A  L   +V PA ++A ++L++FEII+KA   GA  S +EI ++
Sbjct: 13  ISATSEQTEDSACLS-AXVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFXSPSEIASK 71
Query: 60  IPLKDNNPEAAAMMLDRVLRLLVSYNALHCS---FVDG--QRLYSLASVAKYFVRNNQNG 114
           +P    + +    +  R LRLL SY+ L  +     DG  +R+Y L+ V KY V +   G
Sbjct: 72  LPASTQHSDLPNRLD-RXLRLLASYSVLTSTTRTIEDGGAERVYGLSXVGKYLVPDESRG 130
Query: 115 ASLRPYMALRLDKVPMDYWFRLKDQIL-EGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGM 173
             L  +         +  W   K+ ++ E    F   HG++ Y++ G D + N +FN   
Sbjct: 131 Y-LASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSX 189
Query: 174 LGHTCVVMEKVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAP 233
           +       ++ LE Y GFE               L +IISKYP IKGIN+DLP VI+NAP
Sbjct: 190 VDVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 249
Query: 234 SYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293
              GIEHVGGD F SVP+ D  ++K V  ++ DE+ ++ L NC+KAL   GK++ V   +
Sbjct: 250 PLSGIEHVGGDXFASVPQGDAXILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL 309
Query: 294 PEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACN-LYVM 352
           PE P  S  S+ +S LD +    V  GRERT+++Y +L+  +GF        A N L V 
Sbjct: 310 PEEPNTSEESKLVSTLDNLXFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVX 368
Query: 353 EFLK 356
           EF K
Sbjct: 369 EFYK 372

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score =  102 bits (253), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 148/322 (45%), Gaps = 19/322 (5%)
Query: 23  AIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLV 82
           A +   ++   VE+++  II   G    LS    + Q+P       +    + R++R L 
Sbjct: 26  AFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVP------SSKIGNVRRLMRYL- 78
Query: 83  SYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILE 142
           ++N         +  Y+L   ++  VR +     L P +   LD      +  LK  I E
Sbjct: 79  AHNGFFEIITKEEESYALTVASELLVRGSD--LCLAPMVECVLDPTLSGSYHELKKWIYE 136
Query: 143 GG-TAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHXXXXXXXX 201
              T F    G   +D++  +  +N  FN  M   + ++   + +    F+         
Sbjct: 137 EDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVG 196
Query: 202 XXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVL 261
                T  +I   +P++K I +D P V++N      + +VGGD F S+P AD +L+K++L
Sbjct: 197 GGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYIL 256
Query: 262 SSFDDEQSLKLLKNCYKALPDGGKLLNVN----VTIPEVPENSATSREISI-LDTICLFQ 316
            ++ D+  L++LK C +A+ + GK   V     V   +  EN  T  ++ + ++  CL  
Sbjct: 257 HNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACL-- 314
Query: 317 VPHGRERTKQEYSELAIKAGFK 338
             +G+ER ++E+ +L I+AGF+
Sbjct: 315 --NGKERNEEEWKKLFIEAGFQ 334

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 149/323 (46%), Gaps = 23/323 (7%)
Query: 29  AMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88
           A+ + +EL + + I     G  ++++E+ + + L   +P +   +L R LRLL       
Sbjct: 25  ALKSAMELGIADAIH--NHGKPMTLSELASSLKL---HP-SKVNILHRFLRLLTHNGFFA 78
Query: 89  CSFVDGQRL-------YSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQIL 141
            + V G+         YSL   +K  +        L   +   L    +D W   K    
Sbjct: 79  KTIVKGKEGDEEEEIAYSLTPPSKLLISGKP--TCLSSIVKGALHPSSLDMWSSSKKWFN 136
Query: 142 EGG--TAFNKAHGMSIYDYMGVDSRFN--DVFNTGMLGHTCVVMEKVLESYKGFEHXXXX 197
           E    T F  A G S +D++  DS  +   +F   M   + +    + E+ + FE     
Sbjct: 137 EDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESL 196
Query: 198 XXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILM 257
                       +I   +P +K   +D P V+ N      +  VGGD F+S+P AD +L+
Sbjct: 197 VDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLL 256
Query: 258 KWVLSSFDDEQSLKLLKNCYKALP---DGGKLLNVNVTIPEVPENSATSREISILDTICL 314
           KWVL  ++DEQSLK+LKN  +A+      GK++ ++++I E  ++   + E+ +   + +
Sbjct: 257 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLT-ELQLDYDLVM 315
Query: 315 FQVPHGRERTKQEYSELAIKAGF 337
             +  G+ERTKQE+ +L   AGF
Sbjct: 316 LTMFLGKERTKQEWEKLIYDAGF 338

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score =  100 bits (250), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 149/323 (46%), Gaps = 23/323 (7%)
Query: 29  AMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88
           A+ + +EL + + I     G  ++++E+ + + L   +P +   +L R LRLL       
Sbjct: 26  ALKSAMELGIADAIH--NHGKPMTLSELASSLKL---HP-SKVNILHRFLRLLTHNGFFA 79
Query: 89  CSFVDGQRL-------YSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQIL 141
            + V G+         YSL   +K  +        L   +   L    +D W   K    
Sbjct: 80  KTIVKGKEGDEEEEIAYSLTPPSKLLISGKP--TCLSSIVKGALHPSSLDMWSSSKKWFN 137
Query: 142 EGG--TAFNKAHGMSIYDYMGVDSRFN--DVFNTGMLGHTCVVMEKVLESYKGFEHXXXX 197
           E    T F  A G S +D++  DS  +   +F   M   + +    + E+ + FE     
Sbjct: 138 EDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESL 197
Query: 198 XXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILM 257
                       +I   +P +K   +D P V+ N      +  VGGD F+S+P AD +L+
Sbjct: 198 VDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLL 257
Query: 258 KWVLSSFDDEQSLKLLKNCYKALP---DGGKLLNVNVTIPEVPENSATSREISILDTICL 314
           KWVL  ++DEQSLK+LKN  +A+      GK++ ++++I E  ++   + E+ +   + +
Sbjct: 258 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLT-ELQLDYDLVM 316
Query: 315 FQVPHGRERTKQEYSELAIKAGF 337
             +  G+ERTKQE+ +L   AGF
Sbjct: 317 LTMFLGKERTKQEWEKLIYDAGF 339

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score =  100 bits (250), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 149/323 (46%), Gaps = 23/323 (7%)
Query: 29  AMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88
           A+ + +EL + + I     G  ++++E+ + + L   +P +   +L R LRLL       
Sbjct: 22  ALKSAMELGIADAIH--NHGKPMTLSELASSLKL---HP-SKVNILHRFLRLLTHNGFFA 75
Query: 89  CSFVDGQRL-------YSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQIL 141
            + V G+         YSL   +K  +        L   +   L    +D W   K    
Sbjct: 76  KTIVKGKEGDEEEEIAYSLTPPSKLLISGKP--TCLSSIVKGALHPSSLDMWSSSKKWFN 133
Query: 142 EGG--TAFNKAHGMSIYDYMGVDSRFN--DVFNTGMLGHTCVVMEKVLESYKGFEHXXXX 197
           E    T F  A G S +D++  DS  +   +F   M   + +    + E+ + FE     
Sbjct: 134 EDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESL 193
Query: 198 XXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILM 257
                       +I   +P +K   +D P V+ N      +  VGGD F+S+P AD +L+
Sbjct: 194 VDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLL 253
Query: 258 KWVLSSFDDEQSLKLLKNCYKALP---DGGKLLNVNVTIPEVPENSATSREISILDTICL 314
           KWVL  ++DEQSLK+LKN  +A+      GK++ ++++I E  ++   + E+ +   + +
Sbjct: 254 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLT-ELQLDYDLVM 312
Query: 315 FQVPHGRERTKQEYSELAIKAGF 337
             +  G+ERTKQE+ +L   AGF
Sbjct: 313 LTMFLGKERTKQEWEKLIYDAGF 335

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 145/322 (45%), Gaps = 19/322 (5%)
Query: 23  AIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLV 82
           A +   ++   VE ++  II   G    LS    + Q+P       ++ +   R L   +
Sbjct: 26  AFIDSXSLKWAVEXNIPNIIQNHGKPISLSNLVSILQVP-------SSKIGNVRRLXRYL 78
Query: 83  SYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILE 142
           ++N         +  Y+L   ++  VR +     L P +   LD      +  LK  I E
Sbjct: 79  AHNGFFEIITKEEESYALTVASELLVRGSD--LCLAPXVECVLDPTLSGSYHELKKWIYE 136
Query: 143 GG-TAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHXXXXXXXX 201
              T F    G   +D++  +  +N  FN      + ++   + +    F+         
Sbjct: 137 EDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLINLALRDCDFVFDGLESIVDVG 196
Query: 202 XXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVL 261
                T  +I   +P++K I +D P V++N      + +VGGD F S+P AD +L+K++L
Sbjct: 197 GGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIPNADAVLLKYIL 256
Query: 262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNV--TIPEVPENSATSREISILDTI---CLFQ 316
            ++ D+  L++LK C +A+ + GK   V +   + +  ++     +I +L  +   CL  
Sbjct: 257 HNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDVNXACL-- 314
Query: 317 VPHGRERTKQEYSELAIKAGFK 338
             +G+ER ++E+ +L I+AGF+
Sbjct: 315 --NGKERNEEEWKKLFIEAGFQ 334

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 156/329 (47%), Gaps = 28/329 (8%)
Query: 23  AIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLL- 81
           A V   ++   +E+++  II   G    LS    + QIP         +  +D V RL+ 
Sbjct: 26  AFVDSMSLKWSIEMNIPNIIHNHGKPITLSNLVSILQIP---------STKVDNVQRLMR 76
Query: 82  -VSYNALHCSFVDGQRL------YSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWF 134
            +++N      +  Q L      Y+L   ++  V+  +    L P +   LD      + 
Sbjct: 77  YLAHNGFF-EIITNQELENEEEAYALTVASELLVKGTE--LCLAPMVECVLDPTLSTSFH 133
Query: 135 RLKDQILEGG-TAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEH 193
            LK  + E   T F    G  +++++  +  +N ++N  +   + ++   + +    FE 
Sbjct: 134 NLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEG 193
Query: 194 XXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEAD 253
                        T  +I   +P++  + +D P V++N      + +VGGD F SVP+AD
Sbjct: 194 LESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFISVPKAD 253
Query: 254 TILMKWVLSSFDDEQSLKLLKNCYKALP-DG--GKLLNVNVTIPEVP-ENSATSREISIL 309
            +L+K VL  + D+  +K+LK C +A+  DG  GK++ +++ I E   EN  T  +I +L
Sbjct: 254 AVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLT--QIKLL 311
Query: 310 DTICLFQVPHGRERTKQEYSELAIKAGFK 338
             + +  V +G+ER ++E+ +L I+AGF+
Sbjct: 312 MNVTISCV-NGKERNEEEWKKLFIEAGFQ 339

>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 115/279 (41%), Gaps = 35/279 (12%)
Query: 74  LDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLR-----PYMALRLDKV 128
           L RVLRLL   + +  S  DG+  ++L             GA+LR     P  A  L   
Sbjct: 72  LRRVLRLLAVRDVVRES--DGR--FAL----------TDKGAALRSDSPVPARAGILXFT 117
Query: 129 PMDYW---FRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVL 185
              +W    R+   +     AF    G S+  Y   D+    ++  G    T    E ++
Sbjct: 118 DTXFWTXSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGX--ETVSAAEHLI 175
Query: 186 ESYKG-FEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIK----NAPSYLG-IE 239
            +  G F                L  ++ ++P ++G+  D   V+     +AP   G  +
Sbjct: 176 LARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWK 235
Query: 240 HVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN 299
            V GDF   VP AD  ++K +L ++ DE S+++L NC +  P  G++L ++  +PE   +
Sbjct: 236 VVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPE-GND 294
Query: 300 SATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK 338
           +  S+E              G+ERT  E   L   AG +
Sbjct: 295 AHQSKEXD----FXXLAARTGQERTAAELEPLFTAAGLR 329

>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 97/225 (43%), Gaps = 17/225 (7%)
Query: 124 RLDKVPMDY--WFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVM 181
           R    P  +  W +L   +  G  +F+ A+G S +     D +  ++FN      +    
Sbjct: 132 RFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAXGSVSLTEA 191
Query: 182 EKVLESYKGFEHXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLG---- 237
            +V  +Y  F              +    ++  +P ++G   + P V + A   L     
Sbjct: 192 GQVAAAYD-FSGAATAVDIGGGRGSLXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGL 250
Query: 238 ---IEHVGGDFFESVPE-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293
               E + GDFFE++P+ AD  L+K VL  +DD+  +++L+    A     +LL ++  I
Sbjct: 251 ADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAXKPDSRLLVIDNLI 310
Query: 294 PEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK 338
            E P  S    ++ +L  +       G ER++ E++ L  K+G +
Sbjct: 311 DERPAASTLFVDLLLLVLVG------GAERSESEFAALLEKSGLR 349

>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 211 IISKYPRIKGINYD----LPYVIKNAPSYLGIEHV---GGDFFESVPE-ADTILMKWVLS 262
           I+   P  +G+  D    L     N  S L  E V   GGD  + VP   D  L+  ++ 
Sbjct: 185 ILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIG 244
Query: 263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRE 322
             D+  SL+LL NC +A+   G+++ +  TI     +++    +S+L  + LF    GR 
Sbjct: 245 DLDEAASLRLLGNCREAMAGDGRVVVIERTI-----SASEPSPMSVLWDVHLFMACAGRH 299
Query: 323 RTKQEYSELAIKAGF 337
           RT +E  +L  + GF
Sbjct: 300 RTTEEVVDLLGRGGF 314

>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 12/210 (5%)
Query: 136 LKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHXX 195
           L D +  G  A+   +G   ++ +  D    D F+  M     +  E   ++Y  +    
Sbjct: 126 LLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVR 184
Query: 196 XXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLG-------IEHVGGDFFES 248
                       L  I  + P ++G   +L    + A            +    GDFF+ 
Sbjct: 185 HVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKP 244
Query: 249 VP-EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREIS 307
           +P  AD +L+ +VL ++ DE +L +L+ C +AL  GG+LL ++    +V E     R  S
Sbjct: 245 LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA--DV-EGDGADRFFS 301
Query: 308 ILDTICLFQVPHGRERTKQEYSELAIKAGF 337
            L  + +     GR RT+ E  +LA  AG 
Sbjct: 302 TLLDLRMLTFMGGRVRTRDEVVDLAGSAGL 331

>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 243 GDFFESVP-EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSA 301
           GDFF+ +P  AD +L+ +VL ++ DE +L +L+ C +AL  GG+LL ++    +V E   
Sbjct: 239 GDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA--DV-EGDG 295
Query: 302 TSREISILDTICLFQVPHGRERTKQEYSELAIKAGF 337
             R  S L  +       GR RT+ E  +LA  AG 
Sbjct: 296 ADRFFSTLLDLRXLTFXGGRVRTRDEVVDLAGSAGL 331

>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 11/139 (7%)
Query: 212 ISKYPRIKGINYDLPYVIKNAPSYLG------IEHVGGDFF-ESVPEADTILMKWVLSSF 264
           +S YP  K   +D+P V+  A  +        I+   GDFF + +PEAD  ++  VL  +
Sbjct: 198 MSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDW 257
Query: 265 DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERT 324
            D +   LL+  Y     GG +L +   + E       ++    L ++ +     G+ERT
Sbjct: 258 ADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQ----LYSLNMLVQTEGQERT 313
Query: 325 KQEYSELAIKAGFKGVNYE 343
              Y  L   AGF+   ++
Sbjct: 314 PTHYHMLLSSAGFRDFQFK 332

>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 13/211 (6%)
Query: 135 RLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHX 194
           RL D I  G   +   +G   Y+ +         F++ +     V  +    +Y  + + 
Sbjct: 126 RLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNV 184
Query: 195 XXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYLG-------IEHVGGDFFE 247
                           I  + P +     ++   +  A SYL        ++ V GDFFE
Sbjct: 185 RHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE 244
Query: 248 SVP-EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREI 306
            +P +AD I++ +VL ++ D  ++++L  C +AL  GG++L       ++ ENS  + + 
Sbjct: 245 PLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD--DLHENS-FNEQF 301
Query: 307 SILDTICLFQVPHGRERTKQEYSELAIKAGF 337
           + LD   L  +  G  RT++++  LA  AG 
Sbjct: 302 TELDLRMLVFL-GGALRTREKWDGLAASAGL 331

>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) Length = 332

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 112/273 (41%), Gaps = 23/273 (8%)
Query: 74  LDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYW 133
           LDR+LR LV   A+     DGQ +Y L    +     + + A  R ++ +       D  
Sbjct: 55  LDRLLRHLV---AVGLFTRDGQGVYGLTEFGEQL--RDDHAAGKRKWLDMNSAVGRGDLG 109
Query: 134 F-RLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFE 192
           F  L   I  G  A+   +G S ++ +G D   +  F+T M  H  +    +   Y  + 
Sbjct: 110 FVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WA 168
Query: 193 HXXXXXXXXXXXXATLNMIISKYPRIKGINYDLPYVIKNAPSYL---GI----EHVGGDF 245
                          L+ +++ +  + G   DL      A       G+    + V G F
Sbjct: 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSF 228
Query: 246 FESVPE-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSR 304
           F+ +P  A   ++  VL  +DD  ++ +L+ C +A   GG +L +     +  E++ T  
Sbjct: 229 FDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD--EHAGTGM 286
Query: 305 EISILDTICLFQVPHGRERTKQEYSELAIKAGF 337
           ++ +L          G+ER+  E  ELA +AG 
Sbjct: 287 DLRMLTYFG------GKERSLAELGELAAQAGL 313

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	1e-128
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	1e-126
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	1e-121
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	1e-113
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	1e-108
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	1e-108
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	1e-108
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	1e-106
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	1e-103
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	1e-103
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	1e-101
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	1e-85
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	8e-84
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	9e-78
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	1e-76
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	1e-07
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-07
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	5e-06
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	3e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	4e-04

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  370 bits (952), Expect = e-128
 Identities = 165/362 (45%), Positives = 232/362 (64%), Gaps = 10/362 (2%)

Query: 1   MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGA-GAKLSVAEIVAQ 59
           +  +     +     +AM+LA A VLP A+ A +ELDV EI++K+      +S AEI AQ
Sbjct: 9   IQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQ 68

Query: 60  IPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD-----GQRLYSLASVAKYFVRNNQNG 114
           +P        A +MLDRVLRLL SY+ +  +  +      +RLY LA V K+  +N ++G
Sbjct: 69  LPT---TNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKN-EDG 124

Query: 115 ASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGML 174
            SL P++ L  DKV ++ WF LKD ILEGG  FNKA+GM+I+DY G D R N VFN GM 
Sbjct: 125 VSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMS 184

Query: 175 GHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS 234
            ++ + M+K+LE Y GFE +  +VDVGGG GA  +MI++KYP I  IN+DLP+VI++AP+
Sbjct: 185 SNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA 244

Query: 235 YLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP 294
           + G+EH+GGD F+ VP+ D I +KW+   + DE  LKLLKNCY ALPD GK++     +P
Sbjct: 245 FSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILP 304

Query: 295 EVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEF 354
             P+ S  ++ +   D + L   P G+ERT++E+  LA+ +GF+G      A N YVMEF
Sbjct: 305 PSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEF 364

Query: 355 LK 356
           LK
Sbjct: 365 LK 366

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  366 bits (941), Expect = e-126
 Identities = 158/364 (43%), Positives = 219/364 (60%), Gaps = 12/364 (3%)

Query: 1   MASMADQ---EEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIV 57
           M S A       + +   +A++LA + VLP  +   +EL + EI+  AG G  L+  E+ 
Sbjct: 5   MGSTAADMAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVA 63

Query: 58  AQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ-----RLYSLASVAKYFVRNNQ 112
           A++P   N    A  M+DR+LRLL SYN + C   +G+     R Y  A V K+   N  
Sbjct: 64  AKLPSAAN--PEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNE- 120

Query: 113 NGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTG 172
           +G S+     +  DKV M+ W+ LKD +L+GG  FNKA+GMS ++Y G D RFN VFN G
Sbjct: 121 DGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEG 180

Query: 173 MLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNA 232
           M  H+ ++ +K+LE Y GFE +  LVDVGGG+GAT+  I + YP IKG+N+DLP+VI  A
Sbjct: 181 MKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEA 240

Query: 233 PSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292
           P + G+ HVGGD F+ VP  DTILMKW+L  + D+    LLKNCY ALP  GK++ V   
Sbjct: 241 PQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI 300

Query: 293 IPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVM 352
           +P  PE + +S+ +  +D I L   P GRER ++E+  LA  AGF GV   Y   N + +
Sbjct: 301 LPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAI 360

Query: 353 EFLK 356
           EF K
Sbjct: 361 EFTK 364

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  353 bits (908), Expect = e-121
 Identities = 139/362 (38%), Positives = 207/362 (57%), Gaps = 11/362 (3%)

Query: 3   SMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAG-AGAKLSVAEIVAQIP 61
           S   ++ E +    AM L   +V PA ++A ++L++FEII+KA   GA +S +EI +++P
Sbjct: 14  SATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLP 73

Query: 62  LKDNNPEAAAMMLDRVLRLLVSYNALHCSFV-----DGQRLYSLASVAKYFVRNNQNGAS 116
               + +     LDR+LRLL SY+ L  +         +R+Y L+ V KY V +  +   
Sbjct: 74  ASTQHSDLPNR-LDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE-SRGY 131

Query: 117 LRPYMALRLDKVPMDYWFRLKDQILEGG-TAFNKAHGMSIYDYMGVDSRFNDVFNTGMLG 175
           L  +         +  W   K+ +++     F   HG++ Y++MG D + N +FN  M+ 
Sbjct: 132 LASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVD 191

Query: 176 HTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY 235
                M+++LE Y GFE +  LVDVGGG G  L +IISKYP IKGIN+DLP VI+NAP  
Sbjct: 192 VCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL 251

Query: 236 LGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295
            GIEHVGGD F SVP+ D +++K V  ++ DE+ ++ L NC+KAL   GK++ V   +PE
Sbjct: 252 SGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE 311

Query: 296 VPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLY-VMEF 354
            P  S  S+ +S LD   +F    GRERT+++Y +L+  +GF        A N   VMEF
Sbjct: 312 EPNTSEESKLVSTLD-NLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEF 370

Query: 355 LK 356
            K
Sbjct: 371 YK 372

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  333 bits (856), Expect = e-113
 Identities = 87/361 (24%), Positives = 170/361 (47%), Gaps = 18/361 (4%)

Query: 1   MASMADQEEETNNF---SYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIV 57
           MAS  +  + +  F   +   +   A +   ++   VE+++  II   G    LS   +V
Sbjct: 1   MASSINGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLS--NLV 58

Query: 58  AQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASL 117
           + + +    P +    + R++R L             +  Y+L   ++  VR +     L
Sbjct: 59  SILQV----PSSKIGNVRRLMRYLAHNGFFEII-TKEEESYALTVASELLVRGS--DLCL 111

Query: 118 RPYMALRLDKVPMDYWFRLKDQILEGG-TAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGH 176
            P +   LD      +  LK  I E   T F    G   +D++  +  +N  FN  M   
Sbjct: 112 APMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASD 171

Query: 177 TCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYL 236
           + ++   + +    F+ ++ +VDVGGG G T  +I   +P++K I +D P V++N     
Sbjct: 172 SKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSN 231

Query: 237 GIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPD---GGKLLNVNVTI 293
            + +VGGD F S+P AD +L+K++L ++ D+  L++LK C +A+ +    GK+  +++ I
Sbjct: 232 NLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 291

Query: 294 PEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVME 353
            +  + +  ++   ++D        +G+ER ++E+ +L I+AGF+          L ++E
Sbjct: 292 DKKKDENQVTQIKLLMDVNMA--CLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIE 349

Query: 354 F 354
            
Sbjct: 350 I 350

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  320 bits (822), Expect = e-108
 Identities = 96/363 (26%), Positives = 165/363 (45%), Gaps = 23/363 (6%)

Query: 6   DQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDN 65
           ++ E  +   +  +     V   A+ + +EL + + I   G     +++E+ + + L   
Sbjct: 3   EESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPM--TLSELASSLKL--- 57

Query: 66  NPEAAAMMLDRVLRLLVSYNALHCSFVDG-------QRLYSLASVAKYFVRNNQNGASLR 118
              +   +L R LRLL        + V G       +  YSL   +K  +        L 
Sbjct: 58  -HPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPT--CLS 114

Query: 119 PYMALRLDKVPMDYWFRLKDQILEGG--TAFNKAHGMSIYDYMGVDSRFN--DVFNTGML 174
             +   L    +D W   K    E    T F  A G S +D++  DS  +   +F   M 
Sbjct: 115 SIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMA 174

Query: 175 GHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS 234
             + +    + E+ + FE ++ LVDVGGG G    +I   +P +K   +D P V+ N   
Sbjct: 175 SDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG 234

Query: 235 YLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALP---DGGKLLNVNV 291
              +  VGGD F+S+P AD +L+KWVL  ++DEQSLK+LKN  +A+      GK++ +++
Sbjct: 235 NENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDI 294

Query: 292 TIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYV 351
           +I E  ++   +      D + +  +  G+ERTKQE+ +L   AGF        +    +
Sbjct: 295 SIDETSDDRGLTELQLDYD-LVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSL 353

Query: 352 MEF 354
           +E 
Sbjct: 354 IEV 356

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  319 bits (820), Expect = e-108
 Identities = 75/349 (21%), Positives = 144/349 (41%), Gaps = 31/349 (8%)

Query: 17  AMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDR 76
             ++        A+H  VEL V E++         +   +                 L R
Sbjct: 42  VNDILQGAWKARAIHVAVELGVPELL----QEGPRTATALAEATGAH-------EQTLRR 90

Query: 77  VLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRL 136
           +LRLL +        +    L++  +++   + +    + +      +        W +L
Sbjct: 91  LLRLLATVGVFDD--LGHDDLFAQNALSAVLLPDP--ASPVATDARFQAAPWHWRAWEQL 146

Query: 137 KDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKK 196
              +  G  +F+ A+G S +     D +  ++FN  M   +     +V  +Y  F     
Sbjct: 147 THSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAAT 205

Query: 197 LVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYL-------GIEHVGGDFFESV 249
            VD+GGG G+ +  ++  +P ++G   + P V + A   L         E + GDFFE++
Sbjct: 206 AVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETI 265

Query: 250 P-EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI 308
           P  AD  L+K VL  +DD+  +++L+    A+    +LL ++  I E P  S        
Sbjct: 266 PDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLF----- 320

Query: 309 LDTICLFQVPHGRERTKQEYSELAIKAGFKGVN-YEYGACNLYVMEFLK 356
           +D + L  +  G ER++ E++ L  K+G +       GA  + ++E  +
Sbjct: 321 VD-LLLLVLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  318 bits (817), Expect = e-108
 Identities = 75/357 (21%), Positives = 137/357 (38%), Gaps = 28/357 (7%)

Query: 2   ASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIP 61
           +      +   +     E A      AA+ A   + V + +         + AE+ A   
Sbjct: 11  SRAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHL----VDGPRTPAELAAATG 66

Query: 62  LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYM 121
                    A  L RVLRLL   + +  S       ++L         ++      R  +
Sbjct: 67  TD-------ADALRRVLRLLAVRDVVRES----DGRFALTDKGAALRSDS--PVPARAGI 113

Query: 122 ALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVM 181
            +  D +      R+   +     AF    G S+  Y   D+    ++  GM   +    
Sbjct: 114 LMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEH 173

Query: 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKN----APSYLG 237
             +  +   F     + DVGGG G  L  ++ ++P ++G+  D   V+      AP   G
Sbjct: 174 LILARAG-DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAG 232

Query: 238 -IEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV 296
             + V GDF   VP AD  ++K +L ++ DE S+++L NC + +P  G++L ++  +PE 
Sbjct: 233 RWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEG 292

Query: 297 PENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVME 353
            +    + +   +D   +     G+ERT  E   L   AG +       +  + +  
Sbjct: 293 ND----AHQSKEMD-FMMLAARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAV 344

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  316 bits (811), Expect = e-106
 Identities = 78/373 (20%), Positives = 143/373 (38%), Gaps = 35/373 (9%)

Query: 1   MASMADQE---EETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIV 57
           M+S +  E       +    ++  G +V P A+     L + + +         ++A + 
Sbjct: 1   MSSSSPGEPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHL----LAGADTLAGLA 56

Query: 58  AQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASL 117
            +              L R++R L     L        R      +       +   A  
Sbjct: 57  DRTDT-------HPQALSRLVRHLTVVGVLEGG-EKQGRPLRPTRLGMLLADGH--PAQQ 106

Query: 118 RPYMALRLD-KVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGH 176
           R ++ L          +  L D +  G  A+   +G   ++ +  D    D F+  M   
Sbjct: 107 RAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCD 166

Query: 177 TCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYL 236
             +  E   ++Y  +  V+ ++DVGGG G  L  I  + P ++G   +L    + A    
Sbjct: 167 EDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRF 225

Query: 237 -------GIEHVGGDFFESVP-EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN 288
                   +    GDFF+ +P  AD +L+ +VL ++ DE +L +L+ C +AL  GG+LL 
Sbjct: 226 ADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLV 285

Query: 289 VNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV-----NYE 343
           ++    E   + A     ++LD + +     GR RT+ E  +LA  AG            
Sbjct: 286 LDRADVE--GDGADRFFSTLLD-LRMLTFMGGRVRTRDEVVDLAGSAGLALASERTSGST 342

Query: 344 YGACNLYVMEFLK 356
               +  ++EF  
Sbjct: 343 TLPFDFSILEFTA 355

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  306 bits (786), Expect = e-103
 Identities = 74/335 (22%), Positives = 132/335 (39%), Gaps = 34/335 (10%)

Query: 16  YAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLD 75
             +     +  P A+     L V + I    A    + AEI +       + ++    LD
Sbjct: 8   IGLRALADLATPMAVRVAATLRVADHI----AAGHRTAAEIASAAGA---HADS----LD 56

Query: 76  RVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLD-KVPMDYWF 134
           R+LR LV+         DGQ +Y L    +    ++   A  R ++ +          + 
Sbjct: 57  RLLRHLVAVGLFTR---DGQGVYGLTEFGEQLRDDH--AAGKRKWLDMNSAVGRGDLGFV 111

Query: 135 RLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHV 194
            L   I  G  A+   +G S ++ +G D   +  F+T M  H  +    +   Y  +  +
Sbjct: 112 ELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAAL 170

Query: 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYL-------GIEHVGGDFFE 247
             +VDVGGG G  L+ +++ +  + G   DL      A             + V G FF+
Sbjct: 171 GHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFD 230

Query: 248 SVPE-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREI 306
            +P  A   ++  VL  +DD  ++ +L+ C +A   GG +L +     +           
Sbjct: 231 PLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD-------EHAG 283

Query: 307 SILDTICLFQVPHGRERTKQEYSELAIKAGFKGVN 341
           + +D + +     G+ER+  E  ELA +AG     
Sbjct: 284 TGMD-LRMLTYFGGKERSLAELGELAAQAGLAVRA 317

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  306 bits (785), Expect = e-103
 Identities = 71/334 (21%), Positives = 133/334 (39%), Gaps = 30/334 (8%)

Query: 17  AMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDR 76
            +   G++  P  +     L + + I         +V  + A+       PEA    L R
Sbjct: 23  TLIRLGSLHTPMVVRTAATLRLVDHI----LAGARTVKALAARTDT---RPEA----LLR 71

Query: 77  VLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRL-DKVPMDYWFR 135
           ++R LV+   L     D    +    V +    ++   A+ R +  L          + R
Sbjct: 72  LIRHLVAIGLLEE---DAPGEFVPTEVGELLADDH--PAAQRAWHDLTQAVARADISFTR 126

Query: 136 LKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVK 195
           L D I  G   +   +G   Y+ +         F++ +     V  +    +Y  + +V+
Sbjct: 127 LPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAY-DWTNVR 185

Query: 196 KLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYL-------GIEHVGGDFFES 248
            ++DVGGG G     I  + P +     ++   +  A SYL        ++ V GDFFE 
Sbjct: 186 HVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP 245

Query: 249 VP-EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREIS 307
           +P +AD I++ +VL ++ D  ++++L  C +AL  GG++L            +    E+ 
Sbjct: 246 LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELD 305

Query: 308 ILDTICLFQVPHGRERTKQEYSELAIKAGFKGVN 341
           +     +     G  RT++++  LA  AG     
Sbjct: 306 LR----MLVFLGGALRTREKWDGLAASAGLVVEE 335

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  300 bits (771), Expect = e-101
 Identities = 71/361 (19%), Positives = 125/361 (34%), Gaps = 36/361 (9%)

Query: 4   MADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLK 63
           M +           +++         ++    L + ++I         S   + A +   
Sbjct: 1   MNNSNLAA--ARNLIQVVTGEWKSRCVYVATRLGLADLI----ESGIDSDETLAAAVGSD 54

Query: 64  DNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMAL 123
                  A  + R++RLLV++        D +  Y+    +           S R  M L
Sbjct: 55  -------AERIHRLMRLLVAFEIFQG---DTRDGYANTPTSHLLRDVEG---SFRD-MVL 100

Query: 124 RLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEK 183
              +     W    + +L G   F  A G   Y Y+         F   M     +   +
Sbjct: 101 FYGEEFHAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAMKASN-LAFHE 159

Query: 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYL------- 236
           +      F   +  VDVGGG G     I+   P  +G+  D    +  A   L       
Sbjct: 160 IPRLL-DFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGE 217

Query: 237 GIEHVGGDFFESVP-EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295
            +  VGGD  + VP   D  L+  ++   D+  SL+LL NC +A+   G+++ +  TI  
Sbjct: 218 RVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISA 277

Query: 296 VPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFL 355
              +  +     + D + LF    GR RT +E  +L  + GF             ++   
Sbjct: 278 SEPSPMS----VLWD-VHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAA 332

Query: 356 K 356
           +
Sbjct: 333 R 333

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  261 bits (668), Expect = 1e-85
 Identities = 60/332 (18%), Positives = 109/332 (32%), Gaps = 33/332 (9%)

Query: 18  MELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRV 77
                A    AA+ A VEL+VF  IS+       S   +  +      +       +  +
Sbjct: 11  FNTVNAYQRSAAIKAAVELNVFTAISQGI----ESSQSLAQKCQT---SERG----MRML 59

Query: 78  LRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLK 137
              LV    +       +  Y L S +  F+    +   +   +   L  +  + +  L 
Sbjct: 60  CDYLVIIGFMTK---QAEG-YRLTSDSAMFLDRQ-SKFYVGDAIEFLLSPMITNGFNDLT 114

Query: 138 DQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKL 197
             +L+GGTA +    +       V  +F    +  M     ++ + V E+        K+
Sbjct: 115 AAVLKGGTAISSEGTL--SPEHPVWVQFAKAMSPMMANPAQLIAQLVNEN---KIEPLKV 169

Query: 198 VDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLG-------IEHVGGDFFESV- 249
           +D+    G     +    P  +    D   V++ A               + G  FE   
Sbjct: 170 LDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDY 229

Query: 250 -PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI 308
             + D +L+   L  FD     +LL+    AL   GK++  +            +   + 
Sbjct: 230 GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDA---AA 286

Query: 309 LDTICLFQVPHGRERTKQEYSELAIKAGFKGV 340
              + L   P+G   T  EY  +   AGF   
Sbjct: 287 FSLVMLATTPNGDAYTFAEYESMFSNAGFSHS 318

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  257 bits (659), Expect = 8e-84
 Identities = 75/348 (21%), Positives = 131/348 (37%), Gaps = 32/348 (9%)

Query: 2   ASMADQEEETNNFSYAMELA-GAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI 60
           + M    +  N +  A EL    ++  + M A +ELD+F  +    A     +A + A  
Sbjct: 19  SHMMSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHM----AEGPKDLATLAADT 74

Query: 61  PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPY 120
                        L+ +L  L     ++    DG+  +SL   A Y         +L   
Sbjct: 75  GS-------VPPRLEMLLETLRQMRVINLE--DGK--WSLTEFADYMFSPTPKEPNLHQT 123

Query: 121 MALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVV 180
              +      D ++    Q + G   F          Y  V    N  F      +    
Sbjct: 124 PVAKAMAFLADDFYMGLSQAVRGQKNFK-----GQVPYPPVTREDNLYFEEIHRSNAKFA 178

Query: 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLG--- 237
           ++ +LE  K  + VKK++DVGGG+G     ++  +P +     +LP  I           
Sbjct: 179 IQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKG 237

Query: 238 ----IEHVGGDFF-ESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292
               +  +  D + ES PEAD +L   +L S +++ S  + K  + A+  GG+LL +++ 
Sbjct: 238 VADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV 297

Query: 293 IPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV 340
           I +    +       IL     F V     + +  Y E+    G+K V
Sbjct: 298 IDDPENPNFDYLSHYILGAGMPFSV--LGFKEQARYKEILESLGYKDV 343

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  241 bits (618), Expect = 9e-78
 Identities = 55/351 (15%), Positives = 123/351 (35%), Gaps = 39/351 (11%)

Query: 1   MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI 60
           +    + +    +    ++L+      A +H  V   +F++          + AE+ A  
Sbjct: 12  IYESTEDKAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQTG-----RTPAEVAASF 66

Query: 61  PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPY 120
            +              +L  L +   L     +G   +   ++ + ++        + P 
Sbjct: 67  GM---VEGK----AAILLHALAALGLLTK---EGDA-FRNTALTERYLTTTSAD-YIGPI 114

Query: 121 MALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVV 180
             +    +  D W RL + +        K            D+R  D FN  M+  +  +
Sbjct: 115 --VEHQYLQWDNWPRLGEILRSE-----KPLAFQQESRFAHDTRARDAFNDAMVRLSQPM 167

Query: 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLG--- 237
           ++ V E    F   + ++D+ GG G  L  ++ ++P++ G  +DLP     A   +    
Sbjct: 168 VDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHD 226

Query: 238 ----IEHVGGDFFESVP----EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV 289
               +E    +  ++       AD +++   L  FD  ++ +++ +    +  GG LL +
Sbjct: 227 LGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLIL 286

Query: 290 NVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV 340
            +T+ +     A S   +      +    HG        + +   AG    
Sbjct: 287 TMTMNDDRVTPALS---ADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVG 334

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score =  239 bits (611), Expect = 1e-76
 Identities = 52/338 (15%), Positives = 107/338 (31%), Gaps = 33/338 (9%)

Query: 17  AMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDR 76
           A E+A   V+      +++  +F+++S    G   ++ EI  +  L      A       
Sbjct: 19  AQEIAFGPVVFQVSRLMLKFGIFQLLSGKREG--YTLQEISGRTGL---TRYA----AQV 69

Query: 77  VLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRL 136
           +L   ++   +     +  R Y LA    + + +      +          V     F L
Sbjct: 70  LLEASLTIGTILL---EEDR-YVLAKAGWFLLND-----KMARVNMEFNHDVNYQGLFHL 120

Query: 137 KDQILEGGTAFNKAHGMSIYDYMGV---DSRFNDVFNTGMLGHTCVVMEKVLESYKGFEH 193
           ++ +L G     K  G     Y G+     +    +      ++     K LE      H
Sbjct: 121 EEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIV-FSHH 179

Query: 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLG-------IEHVGGDFF 246
            K+L+D+GG  G      +     ++    DLP  ++              I   G +  
Sbjct: 180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLL 239

Query: 247 E---SVPE-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSAT 302
           +     P   D + M   L  F +E+ + +L    +++    K+  +          +A+
Sbjct: 240 DRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETAS 299

Query: 303 SREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV 340
                I          + +     +       AG +  
Sbjct: 300 YCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVE 337

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 27/154 (17%), Positives = 61/154 (39%), Gaps = 17/154 (11%)

Query: 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGG-DFFESVPEA- 252
           ++++D+G G G  L +   +     G++ +   +IK       +      ++ +S+P+  
Sbjct: 43  RRVLDIGCGRGEFLELCKEEGIESIGVDIN-EDMIKFCEGKFNVVKSDAIEYLKSLPDKY 101

Query: 253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT 311
            D +++   +   D E+  +LL  CY  +     ++   +  P    N       S+   
Sbjct: 102 LDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIV---IESP----NPT-----SLYSL 149

Query: 312 ICLFQVP-HGRERTKQEYSELAIKAGFKGVNYEY 344
           I  +  P H +    +    +    GF+ V  E+
Sbjct: 150 INFYIDPTHKKPVHPETLKFILEYLGFRDVKIEF 183

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 29/208 (13%), Positives = 70/208 (33%), Gaps = 24/208 (11%)

Query: 161 VDSRFN------DVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK 214
           +  +F+      D      +          +           ++D+G G G     ++ K
Sbjct: 6   IKRKFDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEK 65

Query: 215 YPRIKGINYDL-PYVIKNA----PSYLGIEHVGGDFFESVPE--ADTILMKWVLSSFDDE 267
           YP       D+   +++ A       L ++++  D+ +   E   D ++    +   +DE
Sbjct: 66  YPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDE 125

Query: 268 QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSRE----------ISILDTICLFQV 317
              +L K  Y  L + G  +N ++   E       ++           ++  +    ++ 
Sbjct: 126 DKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYER 185

Query: 318 PHGRER-TKQEYSELAIKAGFKGVNYEY 344
               +     +      +AGF+ V+  Y
Sbjct: 186 SKLDKDIEMNQQLNWLKEAGFRDVSCIY 213

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 46.2 bits (109), Expect = 5e-06
 Identities = 30/174 (17%), Positives = 58/174 (33%), Gaps = 26/174 (14%)

Query: 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLG-- 237
           +++ L            +D G G+G     ++    R +    D+    +  A +YLG  
Sbjct: 67  LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEE 125

Query: 238 ----IEHVGGDFFESVPEA---DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN 290
                 +      +  PE    D I ++WV+    D+   + L+ C  +L   G ++   
Sbjct: 126 GKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIV--- 182

Query: 291 VTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY 344
                + +N A        + + L  V     R       +   AG   +  E 
Sbjct: 183 -----IKDNMAQ-------EGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 224

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 27/180 (15%)

Query: 172 GMLGH------TCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL 225
           G+LG         +   +   +        + +D G G+G     +++K      +   +
Sbjct: 66  GVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPV 125

Query: 226 PYVIKNAPSYLGIEHVG----GDFFESVPEA---DTILMKWVLSSFDDEQSLKLLKNCYK 278
            ++++ A   L    VG         +       D I+++W      D   +K  K+C +
Sbjct: 126 KHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQ 185

Query: 279 ALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK 338
           AL   G +           EN +T       D   + +      R+   Y  L  ++G +
Sbjct: 186 ALTPNGYIF--------FKENCSTG------DRFLVDKEDSSLTRSDIHYKRLFNESGVR 231

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 56/404 (13%), Positives = 112/404 (27%), Gaps = 125/404 (30%)

Query: 25  VLPAAMHAVVE-LDVFEI-------ISKAGAGAKLSVAEIVAQIP-----------LKDN 65
           +L     A V+  D  ++       +SK        +  I+               L   
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKE------EIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 66  NPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNN--QNGASLRPYMAL 123
             E     ++ VLR+  +Y  L       QR  S+ +      R+    +      Y   
Sbjct: 75  QEEMVQKFVEEVLRI--NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132

Query: 124 RLDKVPMDYWFRLKDQILEGGTAFNKA-HGM----------SIYDYMGVDSRFND-VF-- 169
           RL         +L+  +LE   A N    G+           +     V  + +  +F  
Sbjct: 133 RLQPY-----LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 170 NTG----------MLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIIS--KYPR 217
           N            ML      ++    S    +H   +      + A L  ++    Y  
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRS--DHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 218 -------------IKGINY--------------DLPYVIKNAPSYLGIEHVGGDFFESVP 250
                            N               D  ++     +++ ++H          
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHSMTLTP--D 301

Query: 251 EADTILMKWVLSSFDD--EQSLK----LLKNCYKALPDG----GKLLNVNVTIPEVPENS 300
           E  ++L+K++     D   + L      L    +++ DG        +VN       +  
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC------DKL 355

Query: 301 ATSREISI--LDTICLFQVPHGRERTKQEYSELAIKAGF-KGVN 341
            T  E S+  L+              ++ +  L++   F    +
Sbjct: 356 TTIIESSLNVLEP----------AEYRKMFDRLSV---FPPSAH 386

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 3/30 (10%)

Query: 266 DEQSLKLLKNCYK--ALPDGGKLLNVNVTI 293
           ++Q+LK L+   K  A  D    L +  T+
Sbjct: 18  EKQALKKLQASLKLYA-DDSAPALAIKATM 46

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 17/157 (10%)

Query: 195 KKLVDVGGGLGATLNMIISKYP-RIKGINYDLPYVIKNAPSYLG----IEHVGGDFFE-S 248
            K++D+G GLG     I  KY     GI+     ++  A   +     I     D     
Sbjct: 57  SKVLDIGSGLGGGCMYINEKYGAHTHGIDIC-SNIVNMANERVSGNNKIIFEANDILTKE 115

Query: 249 VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREI 306
            PE   D I  +  + +   E   KL + CYK L   G LL  +    E         E 
Sbjct: 116 FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDD---EF 172

Query: 307 SILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE 343
                   + +      T +EY+++     FK V  +
Sbjct: 173 KEYVKQRKYTLI-----TVEEYADILTACNFKNVVSK 204

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 33/171 (19%), Positives = 57/171 (33%), Gaps = 23/171 (13%)

Query: 196 KLVDVGGGLGA-TLNMIISKYP--RIKGINYDLPYV------IKNAPSYLGIEHVGGDFF 246
            +  V  G  +  L +  S  P  ++ GI+YD   +               I     D  
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDA- 179

Query: 247 ESVPEA---DTILMKWVLS-SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV--PENS 300
             +      D +    +     DD +  +L +  ++AL  GG L+   +T P    P++ 
Sbjct: 180 WKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSP 239

Query: 301 ATSREISILDTIC-------LFQVPHGRERTKQEYSELAIKAGFKGVNYEY 344
              + I   D          L Q      RT  +      +AGF  + +E 
Sbjct: 240 WDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFED 290

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	100.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	100.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	100.0
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	100.0
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	100.0
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	100.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	100.0
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	100.0
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	100.0
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	100.0
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	100.0
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	100.0
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	100.0
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	100.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	100.0
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.87
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.84
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.8
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.78
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.78
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.76
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.76
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.76
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.76
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.75
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.75
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.74
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.74
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.74
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.74
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.73
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.73
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.73
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.72
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.72
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.72
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.72
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.72
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.72
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.71
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.71
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.7
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.7
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.7
3ocj_A	305	Putative exported protein; structural genomics, PS	99.7
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.7
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.7
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.7
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.69
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.69
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.69
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.68
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.68
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.67
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.67
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.67
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.67
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.66
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.66
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.66
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.66
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.65
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.65
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.65
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.65
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.64
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.64
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.64
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.64
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.64
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.62
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.62
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.62
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.61
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.59
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.59
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.58
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.58
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.58
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.54
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.54
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.54
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.53
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.52
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.52
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.52
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.52
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.52
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.52
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.51
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.5
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.49
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.49
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.48
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.48
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.48
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.48
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.46
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.45
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.44
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.43
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.43
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.42
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.42
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.41
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.39
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.39
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.39
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.38
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.37
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.36
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.36
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.35
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.34
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.34
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.33
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.33
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.33
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.33
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.32
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.31
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.31
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.31
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.3
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.3
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.3
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.29
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.28
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.27
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.27
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.27
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.27
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.26
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.26
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.26
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.26
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.25
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.25
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.25
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.24
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.24
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.23
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.23
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.22
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.22
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.21
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.21
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.21
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.2
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.2
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.2
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.19
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.19
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.19
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.19
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.18
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.18
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.18
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.18
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.18
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.17
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.17
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.17
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.16
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.14
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.14
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.14
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.14
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.13
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.12
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.12
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.12
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.11
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.11
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.11
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.11
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.1
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.09
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.09
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.08
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.07
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.07
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.07
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.07
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.06
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.05
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.05
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.04
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.03
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.02
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.02
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.01
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.01
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.0
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.0
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.0
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.0
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.99
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.99
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.97
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.97
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.97
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.97
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.95
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.95
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.94
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.94
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.94
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.93
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.93
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.93
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.92
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.92
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.92
2o07_A	304	Spermidine synthase; structural genomics, structur	98.91
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.91
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.9
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.89
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.89
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.88
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.88
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.87
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.85
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.84
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.84
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.81
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.8
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.79
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.78
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.76
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.76
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.74
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.73
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.71
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.7
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.69
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.69
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.67
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.66
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.65
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.62
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.49
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	98.48
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.47
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.47
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.45
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.45
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.45
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.43
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.43
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.41
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.41
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.4
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.4
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.4
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.37
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.36
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.36
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.34
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.29
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.29
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.28
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.27
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.27
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.26
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.25
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.23
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.22
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.2
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.99
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.92
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.9
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	97.9
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.89
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.88
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.87
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.84
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.79
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.73
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.67
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.67
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.65
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.55
3khk_A	544	Type I restriction-modification system methylation	97.48
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.42
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.4
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.38
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.34
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.34
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.33
3lkd_A	542	Type I restriction-modification system methyltrans	97.31
3b73_A	111	PHIH1 repressor-like protein; winged-helix-turn-he	97.28
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.25
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.24
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.23
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.23
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	97.05
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.02
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	96.99
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	96.93
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	96.92
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.88
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	96.88
1y0u_A	96	Arsenical resistance operon repressor, putative; s	96.87
2zkz_A	99	Transcriptional repressor PAGR; protein-DNA, HTH m	96.79
2kko_A	108	Possible transcriptional regulatory protein (possi	96.76
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	96.75
1r1u_A	106	CZRA, repressor protein; zinc, DNA binding, transc	96.71
3pqk_A	102	Biofilm growth-associated repressor; helix-turn-he	96.66
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	96.6
3jth_A	98	Transcription activator HLYU; transcription factor	96.56
3df8_A	111	Possible HXLR family transcriptional factor; APC89	96.56
1ub9_A	100	Hypothetical protein PH1061; helix-turn-helix moti	96.48
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	96.46
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	96.34
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	96.31
3f6v_A	151	Possible transcriptional regulator, ARSR family pr	96.27
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.27
1tbx_A	99	ORF F-93, hypothetical 11.0 kDa protein; sulfolobu	96.23
2jsc_A	118	Transcriptional regulator RV1994C/MT2050; cadmium,	96.16
2hzt_A	107	Putative HTH-type transcriptional regulator YTCD;	96.11
4a5n_A	131	Uncharacterized HTH-type transcriptional regulato;	96.07
1z7u_A	112	Hypothetical protein EF0647; winged-helix-turn-hel	96.05
2gxg_A	146	146AA long hypothetical transcriptional regulator;	96.05
3mq0_A	275	Transcriptional repressor of the blcabc operon; he	96.04
1oyi_A	82	Double-stranded RNA-binding protein; (alpha+beta)	95.93
2y75_A	129	HTH-type transcriptional regulator CYMR; DNA bindi	95.91
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	95.91
3f3x_A	144	Transcriptional regulator, MARR family, putative;	95.89
1r1t_A	122	Transcriptional repressor SMTB; zinc, transcriptio	95.85
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	95.83
2fsw_A	107	PG_0823 protein; alpha-beta structure, helix-turn-	95.8
3k0l_A	162	Repressor protein; helix-turn-helix, structural ge	95.73
1yyv_A	131	Putative transcriptional regulator; reductive meth	95.69
3ech_A	142	MEXR, multidrug resistance operon repressor; winge	95.68
3bdd_A	142	Regulatory protein MARR; putative multiple antibio	95.67
1on2_A	142	Transcriptional regulator MNTR; helix-turn-helix,	95.64
3cdh_A	155	Transcriptional regulator, MARR family; helix-turn	95.62
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	95.62
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.57
1r7j_A	95	Conserved hypothetical protein SSO10A; winged heli	95.54
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	95.52
2qww_A	154	Transcriptional regulator, MARR family; YP_013417.	95.5
1mkm_A	249	ICLR transcriptional regulator; structural genomic	95.49
2nnn_A	140	Probable transcriptional regulator; structural gen	95.48
2hr3_A	147	Probable transcriptional regulator; MCSG, structur	95.46
2nyx_A	168	Probable transcriptional regulatory protein, RV14;	95.46
1jgs_A	138	Multiple antibiotic resistance protein MARR; trans	95.42
3fm5_A	150	Transcriptional regulator; MCSG, PF04017, PSI, MAR	95.4
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	95.39
3bpv_A	138	Transcriptional regulator; MARR, DNA binding, tran	95.38
3bja_A	139	Transcriptional regulator, MARR family, putative;	95.37
3g3z_A	145	NMB1585, transcriptional regulator, MARR family; t	95.35
2xrn_A	241	HTH-type transcriptional regulator TTGV; DNA-bindi	95.35
2rdp_A	150	Putative transcriptional regulator MARR; PFAM PF01	95.34
3lwf_A	159	LIN1550 protein, putative transcriptional regulato	95.32
3t8r_A	143	Staphylococcus aureus CYMR; transcriptional regula	95.31
3boq_A	160	Transcriptional regulator, MARR family; MARR famil	95.24
3ufb_A	530	Type I restriction-modification system methyltran	95.23
3r4k_A	260	Transcriptional regulator, ICLR family; DNA/RNA-bi	95.22
1s3j_A	155	YUSO protein; structural genomics, MARR transcript	95.16
2fbi_A	142	Probable transcriptional regulator; MARR, APC5816,	95.11
2wte_A	244	CSA3; antiviral protein, viral resistance, winged	95.09
3oop_A	143	LIN2960 protein; protein structure initiative, PSI	95.05
1lj9_A	144	Transcriptional regulator SLYA; HTH DNA binding pr	95.02
2f2e_A	146	PA1607; transcription factor, helix-TRUN-helix, AP	95.01
2fbh_A	146	Transcriptional regulator PA3341; MARR, transcript	94.99
2eth_A	154	Transcriptional regulator, putative, MAR family; M	94.95
2a61_A	145	Transcriptional regulator TM0710; APC4350, MCSG, m	94.95
3kp7_A	151	Transcriptional regulator TCAR; multiple drug resi	94.9
2o0y_A	260	Transcriptional regulator; ICLR-family, structural	94.87
3nrv_A	148	Putative transcriptional regulator (MARR/EMRR FAM;	94.83
2pg4_A	95	Uncharacterized protein; structural genomics, join	94.72
3s2w_A	159	Transcriptional regulator, MARR family; structural	94.7
4hbl_A	149	Transcriptional regulator, MARR family; HTH, trans	94.68
3e6m_A	161	MARR family transcriptional regulator; APC88769, s	94.67
3cjn_A	162	Transcriptional regulator, MARR family; silicibact	94.65
2fa5_A	162	Transcriptional regulator MARR/EMRR family; multip	94.57
3hsr_A	140	HTH-type transcriptional regulator SARZ; helix-tur	94.53
2qvo_A	95	Uncharacterized protein AF_1382; PSI, structural g	94.49
2lkp_A	119	Transcriptional regulator, ARSR family; symmetric	94.48
3bj6_A	152	Transcriptional regulator, MARR family; helix-turn	94.47
1ylf_A	149	RRF2 family protein; structural genomics, transcri	94.45
3eco_A	139	MEPR; mutlidrug efflux pump regulator winged helix	94.43
1z91_A	147	Organic hydroperoxide resistance transcriptional;	94.41
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.38
2g7u_A	257	Transcriptional regulator; ICLR family, structural	94.37
3bro_A	141	Transcriptional regulator; helix_TURN_helix, multi	94.3
3k69_A	162	Putative transcription regulator; putative transcr	94.25
3tgn_A	146	ADC operon repressor ADCR; helix-turn-helix, trans	94.25
2frh_A	127	SARA, staphylococcal accessory regulator A; winged	94.24
2obp_A	96	Putative DNA-binding protein; structural genomics,	94.14
2pex_A	153	Transcriptional regulator OHRR; transcription regu	94.13
2bv6_A	142	MGRA, HTH-type transcriptional regulator MGRA; mul	94.1
1sfx_A	109	Conserved hypothetical protein AF2008; structural	94.05
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	93.97
4aik_A	151	Transcriptional regulator SLYA; transcription, tra	93.93
2ia2_A	265	Putative transcriptional regulator; SAD, PSI-2, st	93.91
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	93.89
2x4h_A	139	Hypothetical protein SSO2273; transcription; 2.30A	93.85
2h09_A	155	Transcriptional regulator MNTR; transcription regu	93.73
2p4w_A	202	Transcriptional regulatory protein ARSR family; ar	93.64
3r0a_A	123	Putative transcriptional regulator; structural gen	93.58
3deu_A	166	Transcriptional regulator SLYA; MARR, WING-helix,	93.5
1bja_A	95	Transcription regulatory protein MOTA; activation	93.47
3u1d_A	151	Uncharacterized protein; GNTR-superfamily, structu	93.47
3nqo_A	189	MARR-family transcriptional regulator; structural	93.35
3jw4_A	148	Transcriptional regulator, MARR/EMRR family; DNA-b	93.35
1q1h_A	110	TFE, transcription factor E, TFE; TFIIE, transcrip	93.22
4b8x_A	147	SCO5413, possible MARR-transcriptional regulator;	93.04
1p6r_A	82	Penicillinase repressor; transcription regulation,	92.87
3hrs_A	214	Metalloregulator SCAR; DTXR/MNTR family member, tr	92.8
1xd7_A	145	YWNA; structural genomics, protein structure initi	92.49
2fxa_A	207	Protease production regulatory protein HPR; protea	92.14
2qlz_A	232	Transcription factor PF0095; 2.50A {Pyrococcus fur	92.12
3u2r_A	168	Regulatory protein MARR; structural genomics, PSI-	92.12
2lnb_A	80	Z-DNA-binding protein 1; structural genomics, nort	92.03
1okr_A	123	MECI, methicillin resistance regulatory protein ME	91.94
1sfu_A	75	34L protein; protein/Z-DNA complex, DNA binding pr	91.92
2vn2_A	128	DNAD, chromosome replication initiation protein; D	91.62
4esf_A	117	PADR-like transcriptional regulator; PADR family,	91.6
2fbk_A	181	Transcriptional regulator, MARR family; winged-hel	91.37
4g6q_A	182	Putative uncharacterized protein; structural genom	91.35
2esh_A	118	Conserved hypothetical protein TM0937; APC5794, st	91.09
2pn6_A	150	ST1022, 150AA long hypothetical transcriptional re	91.03
2cfx_A	144	HTH-type transcriptional regulator LRPC; transcrip	90.86
2k4b_A	99	Transcriptional regulator; DNA binding protein, wi	90.73
3l7w_A	108	Putative uncharacterized protein SMU.1704; PADR, t	90.61
2w25_A	150	Probable transcriptional regulatory protein; trans	90.57
2p5v_A	162	Transcriptional regulator, LRP/ASNC family; NMB057	90.32
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	90.12
1ku9_A	152	Hypothetical protein MJ223; putative transcription	90.08
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	90.05
1jhg_A	101	Trp operon repressor; complex (regulatory protein-	89.97
2cyy_A	151	Putative HTH-type transcriptional regulator PH151;	89.93
2xvc_A	59	ESCRT-III, SSO0910; cell cycle, cell division, cyt	89.72
2dbb_A	151	Putative HTH-type transcriptional regulator PH006;	89.68
4fx0_A	148	Probable transcriptional repressor protein; helix-	89.55
2e1c_A	171	Putative HTH-type transcriptional regulator PH151;	89.54
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	89.54
2cg4_A	152	Regulatory protein ASNC; DNA binding, FFRP, LRP fa	89.5
3i4p_A	162	Transcriptional regulator, ASNC family; PSI, struc	89.49
1uly_A	192	Hypothetical protein PH1932; helix-turn-helix, str	89.46
1i1g_A	141	Transcriptional regulator LRPA; helix-turn-helix,	89.4
2d1h_A	109	ST1889, 109AA long hypothetical transcriptional re	89.36
3f8b_A	116	Transcriptional regulator, PADR-like family; winge	89.13
1p4x_A	250	Staphylococcal accessory regulator A homologue; wi	89.12
2ia0_A	171	Putative HTH-type transcriptional regulator PF086;	88.93
3hhh_A	116	Transcriptional regulator, PADR family; PF03551, s	88.82
3cta_A	230	Riboflavin kinase; structural genomics, transferas	88.19
2v79_A	135	DNA replication protein DNAD; primosome, DNA-bindi	87.98
3elk_A	117	Putative transcriptional regulator TA0346; structu	87.8
1yg2_A	179	Gene activator APHA; virulence factor, winged heli	87.67
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	87.24
1xma_A	145	Predicted transcriptional regulator; southea colla	86.77
2dk5_A	91	DNA-directed RNA polymerase III 39 kDa polypeptide	86.67
1fx7_A	230	Iron-dependent repressor IDER; DTXR, iron-dependen	86.65
1v4r_A	102	Transcriptional repressor; helix-turn-helix, winge	86.1
2o03_A	131	Probable zinc uptake regulation protein FURB; DNA-	85.48
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	85.09
2vxz_A	165	Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Py	85.02
2fe3_A	145	Peroxide operon regulator; oxidative stress regula	84.98
1cf7_A	76	Protein (transcription factor E2F-4); E2F, winged-	84.92
2ek5_A	129	Predicted transcriptional regulators; helix-turn-h	84.74
2g9w_A	138	Conserved hypothetical protein; DNA-binding domain	84.71
3tqn_A	113	Transcriptional regulator, GNTR family; regulatory	84.43
1j5y_A	187	Transcriptional regulator, biotin repressor famil;	84.42
4esb_A	115	Transcriptional regulator, PADR family; DNA bindin	84.37
3mwm_A	139	ZUR, putative metal uptake regulation protein; FUR	84.08
2qq9_A	226	Diphtheria toxin repressor; regulator, DTXR, helix	84.01
1hsj_A	487	Fusion protein consisting of staphylococcus access	83.75
1sd4_A	126	Penicillinase repressor; BLAI, MECI, methicillin,	83.65
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	83.58
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	83.53
3eyi_A	72	Z-DNA-binding protein 1; alternative splicing, DNA	82.95
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	82.9
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	82.86
3i71_A	68	Ethanolamine utilization protein EUTK; helix-turn-	82.71
2p8t_A	200	Hypothetical protein PH0730; pyrococcus horikoshii	82.63
3by6_A	126	Predicted transcriptional regulator; structural ge	82.43
3neu_A	125	LIN1836 protein; structural genomics, PSI-2, prote	82.41
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	81.56
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	81.54
3ri2_A	123	Transcriptional regulator, PADR-like family; PSI-b	81.44
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	80.92
2b0l_A	102	GTP-sensing transcriptional pleiotropic repressor;	80.74
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	80.62
2pjp_A	121	Selenocysteine-specific elongation factor; SELB, p	80.55
4ham_A	134	LMO2241 protein; structural genomics, PSI-biology,	80.39

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=100.00  E-value=2e-55  Score=407.20  Aligned_cols=330  Identities=23%  Similarity=0.350  Sum_probs=292.4

Q ss_pred             HhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           10 ETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +.+++..+++++.||+.+++|++|++|||||.|.+.+  +|.|++|||+++|++      +. .++||||+|++.|++..
T Consensus         5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~~------~~-~l~rlLr~L~~~gll~~   75 (353)
T 4a6d_A            5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRAS------AH-GTELLLDICVSLKLLKV   75 (353)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCcC------HH-HHHHHHHHHHHCCCEEE
Confidence            4478889999999999999999999999999998754  699999999999997      88 99999999999999986


Q ss_pred             eeeCCCcceecchhch-HhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhC---CChhhhhccCchH
Q 018405           90 SFVDGQRLYSLASVAK-YFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHG---MSIYDYMGVDSRF  165 (356)
Q Consensus        90 ~~~~~~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g---~~~~~~~~~~~~~  165 (356)
                      +.+.+++.|++|+.+. ++..++  +.+++.++.+.. +..+..|.+|.+.++++++++...+|   .++|+++..+++.
T Consensus        76 ~~~~~~~~y~~t~~s~~~l~~~~--~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~  152 (353)
T 4a6d_A           76 ETRGGKAFYRNTELSSDYLTTVS--PTSQCSMLKYMG-RTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGE  152 (353)
T ss_dssp             EEETTEEEEEECHHHHHHHSTTS--TTCCHHHHHHHH-HTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHH
T ss_pred             eccCccceeeCCHHHHHHhhcCC--chHHHHHHHHhC-HHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHH
Confidence            5545557899999998 555555  668888887653 45678999999999999999988887   4678888999999


Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC------CCce
Q 018405          166 NDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY------LGIE  239 (356)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~~v~  239 (356)
                      ...|+++|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.      +||+
T Consensus       153 ~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~  231 (353)
T 4a6d_A          153 RLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQID  231 (353)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCcee
Confidence            999999999988888889999887 889999999999999999999999999999999999998877542      7899


Q ss_pred             EEEccCCC-CCCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC
Q 018405          240 HVGGDFFE-SVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP  318 (356)
Q Consensus       240 ~~~~D~~~-~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (356)
                      ++.+|+++ +.|++|+|++.++||+|+|+++.++|++++++|+|||+++|+|.+.+++...+   .....+++.|+..+ 
T Consensus       232 ~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~-  307 (353)
T 4a6d_A          232 FQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT-  307 (353)
T ss_dssp             EEESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS-
T ss_pred             eecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC-
Confidence            99999998 56667999999999999999999999999999999999999999987654332   34456788888765 


Q ss_pred             CCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          319 HGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       319 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      +|++||.+||.++|++|||+.+++.+..+..++|+++|
T Consensus       308 ~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK  345 (353)
T 4a6d_A          308 EGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK  345 (353)
T ss_dssp             SCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred             CCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence            89999999999999999999999999999999999998

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=100.00  E-value=4e-54  Score=400.19  Aligned_cols=345  Identities=46%  Similarity=0.830  Sum_probs=301.9

Q ss_pred             chHHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCC-CCCCchhHhhhHHHHHHHHhhCC
Q 018405            7 QEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPL-KDNNPEAAAMMLDRVLRLLVSYN   85 (356)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~-~~~~~~~~~~~l~r~L~~l~~~g   85 (356)
                      ..++.+++..+++++.+++.+++|++|++||||+.|.+.| ++|+|++|||+++|+ .  +|..+. .++||||+|++.|
T Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~--~~~~~~-~l~rlLr~L~~~g   89 (364)
T 3p9c_A           14 ASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAA--NPEAPD-MVDRILRLLASYN   89 (364)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTT--CTTHHH-HHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCC--Cccchh-hHHHHHHHHHhCC
Confidence            3456789999999999999999999999999999998842 248999999999997 2  233355 8999999999999


Q ss_pred             cccceee---CC--CcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhc
Q 018405           86 ALHCSFV---DG--QRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMG  160 (356)
Q Consensus        86 ~l~~~~~---~~--~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~  160 (356)
                      +++++..   ++  +++|++|+.++.|..++ .+.++++++.+...+.++..|.+|.+++++|.++|+..+|.++|+|+.
T Consensus        90 ~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~  168 (364)
T 3p9c_A           90 VVTCLVEEGKDGRLSRSYGAAPVCKFLTPNE-DGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHG  168 (364)
T ss_dssp             SEEEEEEECSSSCEEEEEEECGGGGGSSCCT-TSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHT
T ss_pred             CEEEeccccCCCCcCCEEecCHHHHHHcCCC-CCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHH
Confidence            9996421   11  37899999999887665 356899988776667788899999999999999999999999999999


Q ss_pred             cCchHHHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceE
Q 018405          161 VDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEH  240 (356)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~  240 (356)
                      .+++..+.|+..|...+......+++.++++++..+|||||||+|.++..+++++|+++++++|+|.+++.++..+++++
T Consensus       169 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~  248 (364)
T 3p9c_A          169 TDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTH  248 (364)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEE
T ss_pred             hCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEE
Confidence            99999999999999888888888998887677889999999999999999999999999999999999999998899999


Q ss_pred             EEccCCCCCCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCC
Q 018405          241 VGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHG  320 (356)
Q Consensus       241 ~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (356)
                      +.+|+++++|++|+|++.++||+|+++++.++|++++++|+|||+++|+|.+.++.............+++.|+....++
T Consensus       249 ~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g  328 (364)
T 3p9c_A          249 VGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGG  328 (364)
T ss_dssp             EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred             EeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCC
Confidence            99999988777799999999999999999999999999999999999999998765443333334456777777443489


Q ss_pred             ccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          321 RERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       321 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      +.||.++|.+++++|||+.+++.+..++.++||++|
T Consensus       329 ~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k  364 (364)
T 3p9c_A          329 RERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK  364 (364)
T ss_dssp             CCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             ccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence            999999999999999999999999999999999997

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=100.00  E-value=1.2e-53  Score=397.71  Aligned_cols=344  Identities=49%  Similarity=0.876  Sum_probs=301.6

Q ss_pred             HHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhC-CCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcc
Q 018405            9 EETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKA-GAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNAL   87 (356)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~-~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l   87 (356)
                      ++.+++..+++++.+++.+++|++|++||||+.|.+. |+++|.|++|||+++|..  +|..+. .++||||+|++.|++
T Consensus        17 ~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~--~~~~~~-~l~rlLr~L~~~gll   93 (368)
T 3reo_A           17 SDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTT--NPEAPV-MLDRVLRLLASYSVV   93 (368)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCC--CTTHHH-HHHHHHHHHHHTTSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcC--CCcchh-hHHHHHHHHHhCCCe
Confidence            5778999999999999999999999999999999884 444689999999999842  344456 899999999999999


Q ss_pred             cceee---CC--CcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccC
Q 018405           88 HCSFV---DG--QRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVD  162 (356)
Q Consensus        88 ~~~~~---~~--~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~  162 (356)
                      +++..   ++  +++|++|+.++.|..++ ++.++++++.+...+.++..|.+|.+++++|.++|+..+|.++|+|+..+
T Consensus        94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~  172 (368)
T 3reo_A           94 TYTLRELPSGKVERLYGLAPVCKFLTKNE-DGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTD  172 (368)
T ss_dssp             EEEEEECTTSCEEEEEEECTTHHHHSCCT-TSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTC
T ss_pred             EEecccCCCCcccceeCcCHHHHHHhCCC-CCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhC
Confidence            96421   11  37899999999877665 35689998877766778889999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEE
Q 018405          163 SRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVG  242 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~  242 (356)
                      ++..+.|+++|...+......+++.++++++..+|||||||+|.++..+++++|+++++++|+|.+++.++..++++++.
T Consensus       173 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~  252 (368)
T 3reo_A          173 HRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLG  252 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEE
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEe
Confidence            99999999999988888888888888667788999999999999999999999999999999999999999889999999


Q ss_pred             ccCCCCCCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCcc
Q 018405          243 GDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRE  322 (356)
Q Consensus       243 ~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (356)
                      +|+++++|++|+|++.++||+|+++++.++|++++++|+|||+++|+|.+.++.............+++.|+....+++.
T Consensus       253 ~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~  332 (368)
T 3reo_A          253 GDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKE  332 (368)
T ss_dssp             CCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCC
T ss_pred             cCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCcc
Confidence            99998877779999999999999999999999999999999999999999876544433334455678777754347899


Q ss_pred             CCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          323 RTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       323 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      ||.++|.++|++|||+.+++.+..++.++||++|
T Consensus       333 rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k  366 (368)
T 3reo_A          333 RTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK  366 (368)
T ss_dssp             CCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             CCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence            9999999999999999999999999999999987

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=100.00  E-value=4.9e-50  Score=371.11  Aligned_cols=325  Identities=22%  Similarity=0.305  Sum_probs=285.8

Q ss_pred             HHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405            9 EETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      ...++...+++++.+++.+++|++++++|||+.|.+    ||.|++|||+++|++      +. .++||||+|++.|+++
T Consensus        18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~~------~~-~l~rlLr~l~~~g~l~   86 (348)
T 3lst_A           18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGTD------AD-ALRRVLRLLAVRDVVR   86 (348)
T ss_dssp             CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCcC------HH-HHHHHHHHHHhCCCEE
Confidence            344788899999999999999999999999999986    599999999999997      88 9999999999999999


Q ss_pred             ceeeCCCcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHH
Q 018405           89 CSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDV  168 (356)
Q Consensus        89 ~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (356)
                      +    ++++|++|+.+..|..++  +.++.+++.+...+.++..|.+|++.+++|+++++..+|.++|+++.++++....
T Consensus        87 ~----~~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~  160 (348)
T 3lst_A           87 E----SDGRFALTDKGAALRSDS--PVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEAL  160 (348)
T ss_dssp             E----ETTEEEECTTTGGGSTTS--SSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHH
T ss_pred             e----cCCEEecCHHHHHHhcCC--CccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHH
Confidence            3    358999999999887665  5578888877655667789999999999999999999998999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC-----CCCceEEEc
Q 018405          169 FNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS-----YLGIEHVGG  243 (356)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~  243 (356)
                      |.+.|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|++.++...+.     .++++++.+
T Consensus       161 f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~  239 (348)
T 3lst_A          161 YYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEG  239 (348)
T ss_dssp             HHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEEC
T ss_pred             HHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEec
Confidence            999999888877888898887 88899999999999999999999999999999999887773321     157999999


Q ss_pred             cCCCCCCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccC
Q 018405          244 DFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRER  323 (356)
Q Consensus       244 D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (356)
                      |+++++|..|+|++.+++|||+++++.++|++++++|+|||+++|.|.+.++....    .....+++.++.. .+++.+
T Consensus       240 d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~-~~~~~~  314 (348)
T 3lst_A          240 DFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAA-RTGQER  314 (348)
T ss_dssp             CTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHT-TSCCCC
T ss_pred             CCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhhc-CCCcCC
Confidence            99987775599999999999999999999999999999999999999988765322    2234566766665 478899


Q ss_pred             CHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          324 TKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       324 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      |.++|.++++++||+++++.+..+..++||++|
T Consensus       315 t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p  347 (348)
T 3lst_A          315 TAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP  347 (348)
T ss_dssp             BHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred             CHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence            999999999999999999999778899999985

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=100.00  E-value=4.2e-50  Score=374.23  Aligned_cols=333  Identities=22%  Similarity=0.376  Sum_probs=292.0

Q ss_pred             CCccccchHHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHH
Q 018405            1 MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRL   80 (356)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~   80 (356)
                      |++++.+..+.....++++++.+++.+++|++++++|||+.|.+    ||.|++|||+++|++      +. .++|||++
T Consensus        26 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~~------~~-~l~rlLr~   94 (369)
T 3gwz_A           26 TPENPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGAH------EQ-TLRRLLRL   94 (369)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTCC------HH-HHHHHHHH
T ss_pred             CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCcC------HH-HHHHHHHH
Confidence            35667777778899999999999999999999999999999986    599999999999997      88 99999999


Q ss_pred             HhhCCcccceeeCCCcc-eecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhh
Q 018405           81 LVSYNALHCSFVDGQRL-YSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYM  159 (356)
Q Consensus        81 l~~~g~l~~~~~~~~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~  159 (356)
                      |++.|+++   ++++++ |++|+.++.|..+.  +.++.+++.+...+..+..|.+|.+.+++++++|...+|.++|+|+
T Consensus        95 L~~~g~l~---~~~~~~~y~~t~~s~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~  169 (369)
T 3gwz_A           95 LATVGVFD---DLGHDDLFAQNALSAVLLPDP--ASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLT  169 (369)
T ss_dssp             HHHTTSSE---ECSSTTEEECCHHHHTTSCCT--TCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHH
T ss_pred             HHhCCCEE---EeCCCceEecCHHHHHHhcCC--chhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHH
Confidence            99999999   444688 99999999886655  4578888877655557789999999999999999999998899999


Q ss_pred             ccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC-----
Q 018405          160 GVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS-----  234 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----  234 (356)
                      .++++....|+..|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++     
T Consensus       170 ~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~  248 (369)
T 3gwz_A          170 HEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGR  248 (369)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHT
T ss_pred             HhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhc
Confidence            999999999999999888888888999887 88889999999999999999999999999999999888887764     


Q ss_pred             --CCCceEEEccCCCCCCC-CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh
Q 018405          235 --YLGIEHVGGDFFESVPE-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT  311 (356)
Q Consensus       235 --~~~v~~~~~D~~~~~~~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~  311 (356)
                        .++|+++.+|+++++|. .|+|++.+++|+|+++++.++|++++++|+|||+++|+|.+.++....    . ...+++
T Consensus       249 ~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~  323 (369)
T 3gwz_A          249 GLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDL  323 (369)
T ss_dssp             TCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHH
T ss_pred             CcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhH
Confidence              26899999999987774 499999999999999999999999999999999999999988765321    1 346677


Q ss_pred             hhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE-ccCceeEEEEeC
Q 018405          312 ICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY-GACNLYVMEFLK  356 (356)
Q Consensus       312 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~  356 (356)
                      .|+... +++.+|.++|.++++++||+++++.+ ..+..++||++|
T Consensus       324 ~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~  368 (369)
T 3gwz_A          324 LLLVLV-GGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR  368 (369)
T ss_dssp             HHHHHH-SCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred             HHHhhc-CCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence            776654 88999999999999999999999999 678899999986

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=100.00  E-value=5.7e-48  Score=357.88  Aligned_cols=337  Identities=25%  Similarity=0.445  Sum_probs=288.3

Q ss_pred             hHHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcc
Q 018405            8 EEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNAL   87 (356)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l   87 (356)
                      .+..++..++++++.+++.+++|++++++|||+.|.+.+  ||.|++|||+++|++   |..+. .++|||++|++.|++
T Consensus        11 ~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~~---~~~~~-~l~rlLr~L~~~gll   84 (352)
T 1fp2_A           11 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQVP---SSKIG-NVRRLMRYLAHNGFF   84 (352)
T ss_dssp             THHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTCC---GGGHH-HHHHHHHHHHHTTSE
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCcC---CCChH-HHHHHHHHHHhCCeE
Confidence            345577889999999999999999999999999998742  489999999999994   33377 999999999999999


Q ss_pred             cceeeCCCcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHh-hCCchhHHhhCCChhhhhccCchHH
Q 018405           88 HCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQIL-EGGTAFNKAHGMSIYDYMGVDSRFN  166 (356)
Q Consensus        88 ~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~g~~~~~~~~~~~~~~  166 (356)
                      +++. ++++.|++|+.+++|..++  +.++++++.+...+.++..|.+|++.++ +|+++|+..+|.++|+++..+++..
T Consensus        85 ~~~~-~~~~~y~~t~~s~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~  161 (352)
T 1fp2_A           85 EIIT-KEEESYALTVASELLVRGS--DLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYN  161 (352)
T ss_dssp             EEEE-SSSEEEEECHHHHTTSTTS--SSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHH
T ss_pred             EEec-CCCCeEeCCHHHHHHhCCC--CccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHH
Confidence            9531 1358999999999888666  5689998887666667889999999999 8889999889999999999999999


Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhc-CCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccC
Q 018405          167 DVFNTGMLGHTCVVMEKVLESYK-GFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDF  245 (356)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~  245 (356)
                      ..|+..|........+. ++.++ .+++..+|||||||+|.++..+++++|+.+++++|++.+++.+++.++++++.+|+
T Consensus       162 ~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~  240 (352)
T 1fp2_A          162 TSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDM  240 (352)
T ss_dssp             HHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCT
T ss_pred             HHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccc
Confidence            99999999887766666 66661 26778999999999999999999999999999999999999998877899999999


Q ss_pred             CCCCCCCcEEEecccccCCChHHHHHHHHHHHHhCCC---CCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCcc
Q 018405          246 FESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPD---GGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRE  322 (356)
Q Consensus       246 ~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~p---gG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (356)
                      ++++|..|+|++.++||||+++++.++|++++++|+|   ||+++|.|...++....+........+++.|+. . +++.
T Consensus       241 ~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~  318 (352)
T 1fp2_A          241 FTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKE  318 (352)
T ss_dssp             TTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCC
T ss_pred             cCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCC
Confidence            8877767999999999999998889999999999999   999999999887543221111234456666665 3 5888


Q ss_pred             CCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          323 RTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       323 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      +|.++|.++++++||+++++.+..+..++||++|
T Consensus       319 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  352 (352)
T 1fp2_A          319 RNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP  352 (352)
T ss_dssp             EEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred             CCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence            9999999999999999999999888889999986

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=100.00  E-value=3.8e-48  Score=359.83  Aligned_cols=337  Identities=29%  Similarity=0.467  Sum_probs=287.0

Q ss_pred             HhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           10 ETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      ..++...+++++.+++.+++|++++++|||+.|.+.+  +|.|++|||+++|++   |..+. .++||||+|++.|+|++
T Consensus         7 ~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~~---~~~~~-~l~rlLr~L~~~gll~~   80 (358)
T 1zg3_A            7 LYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKLH---PSKVN-ILHRFLRLLTHNGFFAK   80 (358)
T ss_dssp             CTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTCC---TTTHH-HHHHHHHHHHHTTSEEE
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCCC---CcchH-HHHHHHHHHhhCCcEEE
Confidence            3466778899999999999999999999999998742  489999999999993   22277 99999999999999995


Q ss_pred             eee---C-C---CcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhC--CchhHHhhCCChhhhhc
Q 018405           90 SFV---D-G---QRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEG--GTAFNKAHGMSIYDYMG  160 (356)
Q Consensus        90 ~~~---~-~---~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~~~  160 (356)
                      +..   . +   ++.|++|+.+++|..++  +.++++++.+..++.++..|.+|++.++++  .++|+..+|.++|+++.
T Consensus        81 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~  158 (358)
T 1zg3_A           81 TIVKGKEGDEEEEIAYSLTPPSKLLISGK--PTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLN  158 (358)
T ss_dssp             EEECCSSSSCCCEEEEEECHHHHTTCTTS--TTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHT
T ss_pred             ecccccccCCCCCCEEeCCHHHHHHhCCC--CccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHh
Confidence            310   1 1   47999999999888766  568999888776666788999999999998  78898888989999999


Q ss_pred             cCchHHH--HHHHHHhhhhHHHHHHHHHHhc-CCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCC
Q 018405          161 VDSRFND--VFNTGMLGHTCVVMEKVLESYK-GFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLG  237 (356)
Q Consensus       161 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~  237 (356)
                      .+++...  .|+..|...+.... .+++.++ .+++..+|||||||+|.++..+++++|+++++++|++.+++.+++.++
T Consensus       159 ~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~  237 (358)
T 1zg3_A          159 KDSESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNEN  237 (358)
T ss_dssp             SGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSS
T ss_pred             cChhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCC
Confidence            9999988  99999988776655 7777772 266789999999999999999999999999999999999999887778


Q ss_pred             ceEEEccCCCCCCCCcEEEecccccCCChHHHHHHHHHHHHhCCC---CCEEEEEecccCCCCCCchhhhhhhhhhhhhh
Q 018405          238 IEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPD---GGKLLNVNVTIPEVPENSATSREISILDTICL  314 (356)
Q Consensus       238 v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~p---gG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~  314 (356)
                      ++++.+|+++++|.+|+|++.++||+|+++++.++|++++++|+|   ||+++|.|...++....+........+++.|+
T Consensus       238 v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~  317 (358)
T 1zg3_A          238 LNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVML  317 (358)
T ss_dssp             EEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHH
T ss_pred             cEEEeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHh
Confidence            999999999877767999999999999999899999999999999   99999999988764322111234456677666


Q ss_pred             hhcCCCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          315 FQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       315 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      ... +++.||.++|.++++++||+++++.+..+..++||++|
T Consensus       318 ~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~  358 (358)
T 1zg3_A          318 TMF-LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP  358 (358)
T ss_dssp             HHH-SCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred             ccC-CCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence            543 78899999999999999999999999878889999986

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=100.00  E-value=2.8e-48  Score=362.49  Aligned_cols=339  Identities=41%  Similarity=0.723  Sum_probs=273.9

Q ss_pred             hHHHHHHH--HHHhhhHHHHHHHHHHhcCchhHHHhCC-CCCCCCHHHHHHhCCC---CCCCchhHhhhHHHHHHHHhhC
Q 018405           11 TNNFSYAM--ELAGAIVLPAAMHAVVELDVFEIISKAG-AGAKLSVAEIVAQIPL---KDNNPEAAAMMLDRVLRLLVSY   84 (356)
Q Consensus        11 ~~~~~~~~--~~~~~~~~~~~l~~a~~lglf~~L~~~~-~~~~~t~~ela~~~~~---~~~~~~~~~~~l~r~L~~l~~~   84 (356)
                      .++.+.++  +++.+++.+++|++++++|||+.|.+.+ ++++.|++|||+++|+   +   |..+. .++||||+|++.
T Consensus        20 ~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~---~~~~~-~l~rlLr~L~~~   95 (372)
T 1fp1_D           20 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQH---SDLPN-RLDRMLRLLASY   95 (372)
T ss_dssp             CHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCC---TTHHH-HHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCC---CcChH-HHHHHHHHHhhC
Confidence            36677788  9999999999999999999999999742 1112999999999999   3   22277 999999999999


Q ss_pred             Cccccee---eCC--CcceecchhchHhhhCCCCC-CChHHHHHHhcCcchhhhhhhHHHHHhhC-CchhHHhhCCChhh
Q 018405           85 NALHCSF---VDG--QRLYSLASVAKYFVRNNQNG-ASLRPYMALRLDKVPMDYWFRLKDQILEG-GTAFNKAHGMSIYD  157 (356)
Q Consensus        85 g~l~~~~---~~~--~~~y~~t~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~  157 (356)
                      |+|+++.   +++  ++.|++|+.+++|..++  + .++++++.+..++.++..|.+|++.++++ +++|+..+|.++|+
T Consensus        96 gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~  173 (372)
T 1fp1_D           96 SVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE--SRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYE  173 (372)
T ss_dssp             TSEEEEEEECTTSCEEEEEEECTTGGGGSTTC--TTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------
T ss_pred             CceEecccccCCCCcCCeEecCHHHHHHhCCC--CCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHH
Confidence            9999541   111  36999999999888765  4 57888888766666788999999999998 88898888989999


Q ss_pred             hhccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCC
Q 018405          158 YMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLG  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~  237 (356)
                      ++..+++....|+..|..........+++.++.+++..+|||||||+|.++..+++++|+++++++|++.+++.+++.++
T Consensus       174 ~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~  253 (372)
T 1fp1_D          174 FMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSG  253 (372)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTT
T ss_pred             HHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCC
Confidence            99999999999999999888877888888886577889999999999999999999999999999999999999988788


Q ss_pred             ceEEEccCCCCCCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc
Q 018405          238 IEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV  317 (356)
Q Consensus       238 v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (356)
                      ++++.+|+++++|.+|+|++.++||||+++++.++|++++++|+|||+++|.|...++.............+++.|+.. 
T Consensus       254 v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~-  332 (372)
T 1fp1_D          254 IEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT-  332 (372)
T ss_dssp             EEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHH-
T ss_pred             CEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhc-
Confidence            9999999998777679999999999999998899999999999999999999998776532221111344566666543 


Q ss_pred             CCCccCCHHHHHHHHHHcCCcceeEEEccCc-eeEEEEeC
Q 018405          318 PHGRERTKQEYSELAIKAGFKGVNYEYGACN-LYVMEFLK  356 (356)
Q Consensus       318 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~~  356 (356)
                      .+++.+|.++|.++++++||+++++.+...+ .++||++|
T Consensus       333 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~  372 (372)
T 1fp1_D          333 VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK  372 (372)
T ss_dssp             HSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred             cCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence            3688899999999999999999999985433 69999987

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=100.00  E-value=7.2e-49  Score=361.19  Aligned_cols=316  Identities=24%  Similarity=0.343  Sum_probs=276.0

Q ss_pred             HHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC
Q 018405           15 SYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG   94 (356)
Q Consensus        15 ~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~   94 (356)
                      +.+++++.+++.+++|++++++|||+.|.+    ||.|++|||+++|++      +. .++|||++|++.|++.   +++
T Consensus         7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~~------~~-~l~rlLr~l~~~gl~~---~~~   72 (332)
T 3i53_A            7 HIGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGAH------AD-SLDRLLRHLVAVGLFT---RDG   72 (332)
T ss_dssp             SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEE---ECT
T ss_pred             HHHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHhCCcEE---ecC
Confidence            457889999999999999999999999986    599999999999997      88 9999999999999999   444


Q ss_pred             CcceecchhchHhhhCCCCCCChHHHHHHhcCcchh-hhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHHHH
Q 018405           95 QRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPM-DYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGM  173 (356)
Q Consensus        95 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  173 (356)
                      ++.|++|+.++.+..++  +.++.+++.+......+ ..|.+|.+.+++++++|+..+|.++|+++.++++....|...|
T Consensus        73 ~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m  150 (332)
T 3i53_A           73 QGVYGLTEFGEQLRDDH--AAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLM  150 (332)
T ss_dssp             TSBEEECTTGGGGSTTC--TTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred             CCeEEcCHhHHHHhcCC--chhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHH
Confidence            68999999999886655  45788888665333344 7899999999999999999999889999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCC
Q 018405          174 LGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFF  246 (356)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~  246 (356)
                      ........+.+++.++ +++..+|||||||+|.++..+++++|+.+++++|+|.+++.++++       ++|+++.+|++
T Consensus       151 ~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  229 (332)
T 3i53_A          151 SHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF  229 (332)
T ss_dssp             HHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             HHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC
Confidence            9887777777777776 778899999999999999999999999999999998888877642       68999999999


Q ss_pred             CCCCC-CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCH
Q 018405          247 ESVPE-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTK  325 (356)
Q Consensus       247 ~~~~~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  325 (356)
                      +++|. .|+|++.+++|||+++++.++|++++++|+|||+++|.|.+.++. .+      ...+++.|+... +++.+|.
T Consensus       230 ~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~------~~~~d~~~~~~~-~~~~~t~  301 (332)
T 3i53_A          230 DPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA------GTGMDLRMLTYF-GGKERSL  301 (332)
T ss_dssp             SCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C------CHHHHHHHHHHH-SCCCCCH
T ss_pred             CCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc------cHHHHHHHHhhC-CCCCCCH
Confidence            87774 599999999999999999999999999999999999999988764 11      235666666554 7889999


Q ss_pred             HHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          326 QEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       326 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      ++|.++++++||+++++.+... .++||+++
T Consensus       302 ~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~  331 (332)
T 3i53_A          302 AELGELAAQAGLAVRAAHPISY-VSIVEMTA  331 (332)
T ss_dssp             HHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred             HHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence            9999999999999999999888 99999975

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.5e-47  Score=352.77  Aligned_cols=319  Identities=20%  Similarity=0.326  Sum_probs=279.7

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           12 NNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      .+.+.+++++.+++.+++|++++++|||+.|.+    ||.|++|||+++|++      +. .++|||++|++.|++++  
T Consensus         7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~~------~~-~l~r~Lr~L~~~g~l~~--   73 (334)
T 2ip2_A            7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGSD------AE-RIHRLMRLLVAFEIFQG--   73 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE--
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCcC------HH-HHHHHHHHHHhCCceEe--
Confidence            566889999999999999999999999999976    599999999999997      88 99999999999999994  


Q ss_pred             eCCCcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHH
Q 018405           92 VDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNT  171 (356)
Q Consensus        92 ~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  171 (356)
                       .+++.|++|+.++.|. ++  +.++++++.+.....+ ..|.+|.+.+++++++|+..+|.++|+++.++++....|+.
T Consensus        74 -~~~~~y~~t~~s~~l~-~~--~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~  148 (334)
T 2ip2_A           74 -DTRDGYANTPTSHLLR-DV--EGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLL  148 (334)
T ss_dssp             -ETTTEEEECHHHHTTS-SS--TTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred             -cCCCeEecCHHHHHHh-CC--CccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHH
Confidence             4458999999999777 54  5578888877654444 88999999999999999888898999999999999999999


Q ss_pred             HHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEcc
Q 018405          172 GMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGD  244 (356)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D  244 (356)
                      .| ..+......+++.++ +++ .+|||||||+|..+..+++++|+.+++++|++.+++.+++.       ++++++.+|
T Consensus       149 ~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d  225 (334)
T 2ip2_A          149 AM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGD  225 (334)
T ss_dssp             HH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESC
T ss_pred             HH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCC
Confidence            99 888888888888887 777 99999999999999999999999999999997777666542       589999999


Q ss_pred             CCCCCCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccC
Q 018405          245 FFESVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRER  323 (356)
Q Consensus       245 ~~~~~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (356)
                      +++++|.. |+|++.+++|||+++++.++|++++++|+|||+++|.|...++....    .....+++.|+... +++.+
T Consensus       226 ~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~  300 (334)
T 2ip2_A          226 MLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS----PMSVLWDVHLFMAC-AGRHR  300 (334)
T ss_dssp             TTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC----HHHHHHHHHHHHHH-SCCCC
T ss_pred             CCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhHHhhhHhHhhC-CCcCC
Confidence            99877764 99999999999999999999999999999999999999987654321    23445666666554 68889


Q ss_pred             CHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          324 TKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       324 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      |.++|.++++++||+++++.+..++.++|+++|
T Consensus       301 t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~  333 (334)
T 2ip2_A          301 TTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR  333 (334)
T ss_dssp             BHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred             CHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence            999999999999999999999888899999986

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=100.00  E-value=6.5e-45  Score=338.43  Aligned_cols=324  Identities=16%  Similarity=0.206  Sum_probs=259.6

Q ss_pred             HhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           10 ETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      ..++..++++++.+++.+++|++++++|||+.|.+.+  ||.|++|||+++|++      +. .++|||++|++.|++++
T Consensus        12 ~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~~------~~-~l~rlLr~l~~~g~l~~   82 (363)
T 3dp7_A           12 AAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGLT------RY-AAQVLLEASLTIGTILL   82 (363)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCcC------HH-HHHHHHHHHhhCCCeEe
Confidence            3467888999999999999999999999999998732  599999999999997      88 99999999999999984


Q ss_pred             eeeCCCcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhC--CChhhhhccCchHHH
Q 018405           90 SFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHG--MSIYDYMGVDSRFND  167 (356)
Q Consensus        90 ~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g--~~~~~~~~~~~~~~~  167 (356)
                         + +++|++|+.+.+|..++    ....++.+. .+..+..|.+|++++++|++++...+|  .++|+++..+++...
T Consensus        83 ---~-~~~y~~t~~s~~L~~~~----~~~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~  153 (363)
T 3dp7_A           83 ---E-EDRYVLAKAGWFLLNDK----MARVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQ  153 (363)
T ss_dssp             ---E-TTEEEECHHHHHHHHCH----HHHHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHH
T ss_pred             ---c-CCEEecccchHHhhCCC----cccchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHH
Confidence               3 58999999999888765    222233222 355788999999999999988888888  689999998887665


Q ss_pred             ----HHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------C
Q 018405          168 ----VFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------L  236 (356)
Q Consensus       168 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~  236 (356)
                          .|+..|.....   ..++..+. ..+..+|||||||+|.++..+++++|+.+++++|+|.+++.++++       +
T Consensus       154 ~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~  229 (363)
T 3dp7_A          154 KSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSE  229 (363)
T ss_dssp             HHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGG
T ss_pred             HHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCccc
Confidence                35565554332   23444443 356789999999999999999999999999999998888877643       4


Q ss_pred             CceEEEccCCCC---CCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCch-hhhhhhhhhh
Q 018405          237 GIEHVGGDFFES---VPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSA-TSREISILDT  311 (356)
Q Consensus       237 ~v~~~~~D~~~~---~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~-~~~~~~~~~~  311 (356)
                      +++++.+|++++   .|+. |+|++.++||+|+++++.++|++++++|+|||+++|+|.+.++...... ........++
T Consensus       230 ~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~  309 (363)
T 3dp7_A          230 RIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYF  309 (363)
T ss_dssp             GEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHH
T ss_pred             ceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhH
Confidence            799999999984   5644 9999999999999999999999999999999999999998876432110 0011112233


Q ss_pred             hhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEcc-CceeEEEEeC
Q 018405          312 ICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGA-CNLYVMEFLK  356 (356)
Q Consensus       312 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~  356 (356)
                      .++.. .+++.||.++|.++|+++||+++++.+.. .+.++|+++|
T Consensus       310 ~~~~~-~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~  354 (363)
T 3dp7_A          310 TAMAN-GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL  354 (363)
T ss_dssp             HHSSC-SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred             HhhhC-CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence            33332 35778999999999999999999998765 4589999875

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=100.00  E-value=4.9e-45  Score=341.08  Aligned_cols=324  Identities=22%  Similarity=0.352  Sum_probs=274.6

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           11 TNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      ......+++++.+++.+++|++++++|||+.|..    ||.|++|||+++|++      +. .++|||++|++.|++++ 
T Consensus        14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~~------~~-~l~r~Lr~L~~~Gll~~-   81 (374)
T 1qzz_A           14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDTH------PQ-ALSRLVRHLTVVGVLEG-   81 (374)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEC-
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCcC------HH-HHHHHHHHHhhCCCEEE-
Confidence            3567789999999999999999999999999965    599999999999997      88 99999999999999994 


Q ss_pred             eeCCCc--ceecchhchHhhhCCCCCCChHHHHHHhcCcchh-hhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHH
Q 018405           91 FVDGQR--LYSLASVAKYFVRNNQNGASLRPYMALRLDKVPM-DYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFND  167 (356)
Q Consensus        91 ~~~~~~--~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~  167 (356)
                        .+++  .|++|+.+..|..+.  +.+++.++.+...+..+ ..|.+|.+.+++++++++..+|.++|+++..+++...
T Consensus        82 --~~~~~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~  157 (374)
T 1qzz_A           82 --GEKQGRPLRPTRLGMLLADGH--PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALAD  157 (374)
T ss_dssp             --CCC-CCCCEECTTGGGGSTTC--TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHH
T ss_pred             --eCCCCeEEEEChHHHhhcCCC--cccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHH
Confidence              3346  999999998888766  56788888665433455 7889999999999999988899999999998999999


Q ss_pred             HHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceE
Q 018405          168 VFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEH  240 (356)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~  240 (356)
                      .|+..|..........+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.++++       +++++
T Consensus       158 ~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~  236 (374)
T 1qzz_A          158 SFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTV  236 (374)
T ss_dssp             HHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEE
T ss_pred             HHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEE
Confidence            9999998777766678888777 778899999999999999999999999999999998888777542       48999


Q ss_pred             EEccCCCCCCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec--ccCCCCCCchhhhhhhhhhhhhhhhc
Q 018405          241 VGGDFFESVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV--TIPEVPENSATSREISILDTICLFQV  317 (356)
Q Consensus       241 ~~~D~~~~~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (356)
                      +.+|++++.|.. |+|++.+++|||+++++.++|++++++|+|||+++|.|.  ..++..    .......+++.++...
T Consensus       237 ~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~  312 (374)
T 1qzz_A          237 AEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA----DRFFSTLLDLRMLTFM  312 (374)
T ss_dssp             EECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHHHH
T ss_pred             EeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCC----CcchhhhcchHHHHhC
Confidence            999998877765 999999999999998889999999999999999999998  765432    1223345566665544


Q ss_pred             CCCccCCHHHHHHHHHHcCCcceeEEEccCce-----eEEEEeC
Q 018405          318 PHGRERTKQEYSELAIKAGFKGVNYEYGACNL-----YVMEFLK  356 (356)
Q Consensus       318 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~~  356 (356)
                       ++..++.++|.++++++||+++++.+.....     ++|+++|
T Consensus       313 -~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~  355 (374)
T 1qzz_A          313 -GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA  355 (374)
T ss_dssp             -SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred             -CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence             7888999999999999999999999887777     8999875

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=100.00  E-value=1.4e-44  Score=336.18  Aligned_cols=325  Identities=22%  Similarity=0.355  Sum_probs=277.0

Q ss_pred             HhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           10 ETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      .....+++++++.+++.+++|.+++++|||+.|..    ||.|++|||+++|++      +. .++|||++|++.|++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~~------~~-~l~r~L~~L~~~g~~~~   84 (360)
T 1tw3_A           16 QQIDALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDTR------PE-ALLRLIRHLVAIGLLEE   84 (360)
T ss_dssp             -CHHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred             cccchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCEEe
Confidence            33557888999999999999999999999999975    599999999999997      88 99999999999999994


Q ss_pred             eeeCCCcceecchhchHhhhCCCCCCChHHHHHHhcCcc-hhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHH
Q 018405           90 SFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKV-PMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDV  168 (356)
Q Consensus        90 ~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~  168 (356)
                      +   ++++|++|+.+.+|..+.  +.+++.++.+...+. .+..|.+|.+.+++|+++++..+|.++|+++..+++....
T Consensus        85 ~---~~g~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~  159 (360)
T 1tw3_A           85 D---APGEFVPTEVGELLADDH--PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRAS  159 (360)
T ss_dssp             E---ETTEEEECTTGGGGSTTS--TTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHH
T ss_pred             c---CCCeEEeCHHHHHHhcCC--chhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHH
Confidence            2   358999999998888766  568888776653332 5678899999999999998888898999999888999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEE
Q 018405          169 FNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHV  241 (356)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~  241 (356)
                      |...|..........+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.++++       ++++++
T Consensus       160 f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~  238 (360)
T 1tw3_A          160 FDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVV  238 (360)
T ss_dssp             HHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEE
T ss_pred             HHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEE
Confidence            999998777766778888887 788899999999999999999999999999999987777766542       489999


Q ss_pred             EccCCCCCCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc-cCCCCCCchhhhhhhhhhhhhhhhcCC
Q 018405          242 GGDFFESVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT-IPEVPENSATSREISILDTICLFQVPH  319 (356)
Q Consensus       242 ~~D~~~~~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (356)
                      .+|++++.|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|.. .++....    .....+++.++... +
T Consensus       239 ~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~-~  313 (360)
T 1tw3_A          239 EGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN----EQFTELDLRMLVFL-G  313 (360)
T ss_dssp             ECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHH-S
T ss_pred             eCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc----chhhhccHHHhhhc-C
Confidence            99999877765 9999999999999988899999999999999999999988 5543211    22345566665543 6


Q ss_pred             CccCCHHHHHHHHHHcCCcceeEEEccCc-----eeEEEEeC
Q 018405          320 GRERTKQEYSELAIKAGFKGVNYEYGACN-----LYVMEFLK  356 (356)
Q Consensus       320 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-----~~vi~~~~  356 (356)
                      +..++.++|.++++++||+++++.+..+.     .++|+++|
T Consensus       314 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~  355 (360)
T 1tw3_A          314 GALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP  355 (360)
T ss_dssp             CCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             CcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence            88899999999999999999999888665     78999875

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=100.00  E-value=3.2e-43  Score=323.91  Aligned_cols=315  Identities=18%  Similarity=0.183  Sum_probs=269.5

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeC
Q 018405           14 FSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD   93 (356)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~   93 (356)
                      .+.+++++.+++.+++|++++++|||+.|.+    ||.|++|||+++|++      +. .++|||++|++.|++++   .
T Consensus         7 ~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~~------~~-~l~r~L~~L~~~g~l~~---~   72 (335)
T 2r3s_A            7 PALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQTS------ER-GMRMLCDYLVIIGFMTK---Q   72 (335)
T ss_dssp             SHHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---E
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCCC------ch-HHHHHHHHHHhcCCeEe---c
Confidence            3678999999999999999999999999986    599999999999997      88 99999999999999983   3


Q ss_pred             CCcceecchhc-hHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHHH
Q 018405           94 GQRLYSLASVA-KYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTG  172 (356)
Q Consensus        94 ~~~~y~~t~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  172 (356)
                       ++.|++|+.+ .++..++  +.++++++.+...+.....|.+|.+.+++++++++     + |+++..+++....|...
T Consensus        73 -~~~y~~t~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~  143 (335)
T 2r3s_A           73 -AEGYRLTSDSAMFLDRQS--KFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKA  143 (335)
T ss_dssp             -TTEEEECHHHHHHTCTTS--TTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHH
T ss_pred             -CCEEecCHHHHHHhccCC--cHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHH
Confidence             5899999999 5777665  55788888776544678899999999999887653     3 77788888888999999


Q ss_pred             HhhhhHHHHHHHHHHhcCC--CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEc
Q 018405          173 MLGHTCVVMEKVLESYKGF--EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGG  243 (356)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~  243 (356)
                      |..........+++.++ +  .+..+|||||||+|..+..+++.+|+.+++++|++.+++.+++.       ++++++.+
T Consensus       144 ~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~  222 (335)
T 2r3s_A          144 MSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAG  222 (335)
T ss_dssp             SGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred             HHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEec
Confidence            98888887888888887 6  78899999999999999999999999999999987777777643       47999999


Q ss_pred             cCCC-CCCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCc
Q 018405          244 DFFE-SVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGR  321 (356)
Q Consensus       244 D~~~-~~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (356)
                      |+++ +.++. |+|++.+++|+|+++++.++|++++++|+|||+++++|...++.....   .....+++.++...+++.
T Consensus       223 d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  299 (335)
T 2r3s_A          223 SAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGD  299 (335)
T ss_dssp             CTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCC
T ss_pred             ccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCC
Confidence            9998 66665 999999999999999999999999999999999999999876543221   234455666665544788


Q ss_pred             cCCHHHHHHHHHHcCCcceeEEEccCceeEEEEe
Q 018405          322 ERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFL  355 (356)
Q Consensus       322 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~  355 (356)
                      .++.++|.++++++||+.+++.+..++.++|+++
T Consensus       300 ~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~  333 (335)
T 2r3s_A          300 AYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA  333 (335)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred             cCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence            8999999999999999999999988778877765

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=100.00  E-value=9.9e-43  Score=323.59  Aligned_cols=312  Identities=20%  Similarity=0.308  Sum_probs=261.3

Q ss_pred             HHhHHHHHHHHHHh-hhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcc
Q 018405            9 EETNNFSYAMELAG-AIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNAL   87 (356)
Q Consensus         9 ~~~~~~~~~~~~~~-~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l   87 (356)
                      +..++..++++++. +++.+++|++++++|||+.|.+    ||.|++|||+++|++      +. .++|||++|++.|++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~~------~~-~l~rlLr~L~~~gll   94 (359)
T 1x19_A           26 DLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGSV------PP-RLEMLLETLRQMRVI   94 (359)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSE
T ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCcC------hH-HHHHHHHHHHhCCCe
Confidence            44567788889986 8999999999999999999986    599999999999997      88 999999999999999


Q ss_pred             cceeeCCCcceecchhch-HhhhCCCCC---CChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCc
Q 018405           88 HCSFVDGQRLYSLASVAK-YFVRNNQNG---ASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDS  163 (356)
Q Consensus        88 ~~~~~~~~~~y~~t~~~~-~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~  163 (356)
                      ++   + ++.|++|+.+. ++..++  +   .++++++.+. ...++..|.+|++.++++.+          |+++..++
T Consensus        95 ~~---~-~~~y~~t~~~~~~l~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p  157 (359)
T 1x19_A           95 NL---E-DGKWSLTEFADYMFSPTP--KEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYP  157 (359)
T ss_dssp             EE---E-TTEEEECHHHHHHSSSSC--SBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSS
T ss_pred             Ee---e-CCeEecCHHHHHHhcCCC--CCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCc
Confidence            94   3 37999999755 676654  4   5788887665 34577889999999998654          56677788


Q ss_pred             h---HHHHHHHHHhhhhH-HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC----
Q 018405          164 R---FNDVFNTGMLGHTC-VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY----  235 (356)
Q Consensus       164 ~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~----  235 (356)
                      +   ....|...|..... .....+++.++ +++..+|||||||+|.++..+++++|+.+++++|++.+++.++++    
T Consensus       158 ~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~  236 (359)
T 1x19_A          158 PVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEK  236 (359)
T ss_dssp             CCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhc
Confidence            8   88999999998887 77888898887 888899999999999999999999999999999998887777532    


Q ss_pred             ---CCceEEEccCCC-CCCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh
Q 018405          236 ---LGIEHVGGDFFE-SVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT  311 (356)
Q Consensus       236 ---~~v~~~~~D~~~-~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~  311 (356)
                         ++++++.+|+++ +.+++|+|++.+++|+|+++++.++|++++++|+|||+++|+|...++... ..   ....+  
T Consensus       237 ~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~---~~~~~--  310 (359)
T 1x19_A          237 GVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN-PN---FDYLS--  310 (359)
T ss_dssp             TCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTS-CC---HHHHH--
T ss_pred             CCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCC-ch---HHHHH--
Confidence               469999999998 666669999999999999988999999999999999999999988765421 11   11122  


Q ss_pred             hhhhhcCCCcc----CCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          312 ICLFQVPHGRE----RTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       312 ~~~~~~~~~~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      .++....+++.    ++.++|.++++++||+++++.+.. ..++|+++|
T Consensus       311 ~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k  358 (359)
T 1x19_A          311 HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK  358 (359)
T ss_dssp             HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred             HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence            23222224666    899999999999999999999887 888999987

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=100.00  E-value=9.5e-43  Score=322.96  Aligned_cols=313  Identities=17%  Similarity=0.264  Sum_probs=256.9

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           11 TNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      .+....+++++.+++.+++|++++++|||+.|..     |.|++|||+++|++      +. .++||||+|++.|++++ 
T Consensus        22 l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~-----~~t~~elA~~~~~~------~~-~l~rlLr~L~~~gll~~-   88 (352)
T 3mcz_A           22 LTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT-----GRTPAEVAASFGMV------EG-KAAILLHALAALGLLTK-   88 (352)
T ss_dssp             CCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS-----CBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE-
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC-----CCCHHHHHHHhCcC------hH-HHHHHHHHHHHCCCeEe-
Confidence            3555669999999999999999999999999964     89999999999997      88 99999999999999994 


Q ss_pred             eeCCCcceecchhch-HhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCch-hHHhhCCChhhhhccCchHHHH
Q 018405           91 FVDGQRLYSLASVAK-YFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTA-FNKAHGMSIYDYMGVDSRFNDV  168 (356)
Q Consensus        91 ~~~~~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~~  168 (356)
                        .+ +.|++|+.+. ++.++.  +.+++.++.+.  ...+..|.+|.+.+++|.+. |+..      .++..+++....
T Consensus        89 --~~-~~y~~t~~s~~~l~~~~--~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~  155 (352)
T 3mcz_A           89 --EG-DAFRNTALTERYLTTTS--ADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDA  155 (352)
T ss_dssp             --ET-TEEEECHHHHHHHSTTC--TTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHH
T ss_pred             --cC-CeeecCHHHHhhccCCC--hhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHH
Confidence              43 7899999998 555444  66888877654  34677899999999988653 2221      234567888889


Q ss_pred             HHHHHhhhhHHHHHHHHHHhcCCCC-CceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceE
Q 018405          169 FNTGMLGHTCVVMEKVLESYKGFEH-VKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEH  240 (356)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~  240 (356)
                      |..+|...... +..+++.++ +.+ ..+|||||||+|.++..+++++|+.+++++|++.+++.+++.       +++++
T Consensus       156 f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~  233 (352)
T 3mcz_A          156 FNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEF  233 (352)
T ss_dssp             HHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEE
T ss_pred             HHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEE
Confidence            99988863332 347778777 666 899999999999999999999999999999998777766542       57999


Q ss_pred             EEccCCC-C--CCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhh
Q 018405          241 VGGDFFE-S--VPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQ  316 (356)
Q Consensus       241 ~~~D~~~-~--~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (356)
                      +.+|+++ +  .+.. |+|++.+++|||+++++.++|++++++|+|||+++|.|.+.++.....   .....+++.|+..
T Consensus       234 ~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~  310 (352)
T 3mcz_A          234 FEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSLHMMVN  310 (352)
T ss_dssp             EECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHHHHH
T ss_pred             EeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhHHHHhh
Confidence            9999998 4  5655 999999999999999999999999999999999999999887653322   2345667777655


Q ss_pred             cCCCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          317 VPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       317 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      ..+++.+|.++|.++++++||++++..  .+..++++++|
T Consensus       311 ~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k  348 (352)
T 3mcz_A          311 TNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR  348 (352)
T ss_dssp             STTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred             CCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence            457889999999999999999999843  35688888876

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.87  E-value=1.7e-21  Score=172.11  Aligned_cols=171  Identities=18%  Similarity=0.203  Sum_probs=126.3

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC--CCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY--PRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP  250 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~  250 (356)
                      ..+++.+  .++..+|||||||+|..+..+++.+  |+++++++|. +.+++.|+++       .+|+++++|+.+ +.+
T Consensus        61 ~~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~  138 (261)
T 4gek_A           61 GMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE  138 (261)
T ss_dssp             HHHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC
T ss_pred             HHHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc
Confidence            3444444  4678899999999999999999975  6789999996 8888887642       579999999988 666


Q ss_pred             CCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh-hhhhhhh-hcC----------
Q 018405          251 EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI-LDTICLF-QVP----------  318 (356)
Q Consensus       251 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~----------  318 (356)
                      +.|+|++..+||++++++...+|++++++|+|||++++.|.....+....  ...... .++.... ...          
T Consensus       139 ~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~--~~~~~~~~~~~~~~g~s~~ei~~~~~~l  216 (261)
T 4gek_A          139 NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG--ELLFNMHHDFKRANGYSELEISQKRSML  216 (261)
T ss_dssp             SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH--HHHHHHHHHHHHHTTGGGSTTHHHHHHH
T ss_pred             ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhhh
Confidence            66999999999999988889999999999999999999998776542110  000000 0000000 000          


Q ss_pred             --CCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          319 --HGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       319 --~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                        --...|.+++.++|++|||+.++++.-..++..+.++|
T Consensus       217 ~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K  256 (261)
T 4gek_A          217 ENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALK  256 (261)
T ss_dssp             HHHCCCBCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             cccccCCCHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence              01235889999999999999998876545566666665

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.84  E-value=7.6e-20  Score=159.05  Aligned_cols=174  Identities=17%  Similarity=0.210  Sum_probs=128.7

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC-cE
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA-DT  254 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~-D~  254 (356)
                      ..+++.+....+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++    ++++++.+|+.+ +.+.. |+
T Consensus        33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~  112 (234)
T 3dtn_A           33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM  112 (234)
T ss_dssp             HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred             HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence            44555444345678999999999999999999999999999996 8777766543    489999999988 55544 99


Q ss_pred             EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh--------hh----hhhcCCCcc
Q 018405          255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT--------IC----LFQVPHGRE  322 (356)
Q Consensus       255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~--------~~----~~~~~~~~~  322 (356)
                      |++..++||+++++...+|++++++|+|||++++.+...+....... .....+...        ..    .........
T Consensus       113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (234)
T 3dtn_A          113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIEN-LNKTIWRQYVENSGLTEEEIAAGYERSKLDKD  191 (234)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHH-HHHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhh-HHHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence            99999999999887788999999999999999999987754311000 000000000        00    000012345


Q ss_pred             CCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          323 RTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       323 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      ++.++|.++|++|||+.+++.....+++++..+|
T Consensus       192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~  225 (234)
T 3dtn_A          192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK  225 (234)
T ss_dssp             CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred             cCHHHHHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence            6899999999999999999988877777766554

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.80  E-value=7.6e-20  Score=157.00  Aligned_cols=169  Identities=15%  Similarity=0.185  Sum_probs=121.8

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP  250 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~  250 (356)
                      ....+++.++ .++. +|||||||+|.++..+++. ++.+++++|. +.+++.+++.       ++++++.+|+.+ +++
T Consensus        32 ~~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (219)
T 3dlc_A           32 IAENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence            3455666665 4444 9999999999999999998 8889999996 8887777543       479999999988 666


Q ss_pred             CC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhh-hhhhhhhcCCCccCCHHH
Q 018405          251 EA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISIL-DTICLFQVPHGRERTKQE  327 (356)
Q Consensus       251 ~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~~e  327 (356)
                      ..  |+|++..++||+++  ...+|++++++|+|||++++.+...+............... .+..... .....++.++
T Consensus       109 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  185 (219)
T 3dlc_A          109 DNYADLIVSRGSVFFWED--VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNR-KNISQENVER  185 (219)
T ss_dssp             TTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHH-HHSSHHHHHH
T ss_pred             cccccEEEECchHhhccC--HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhh-hccccCCHHH
Confidence            44  99999999999954  78999999999999999999876544310000000000000 0000000 0233457899


Q ss_pred             HHHHHHHcCCcceeEEEccCceeEEEE
Q 018405          328 YSELAIKAGFKGVNYEYGACNLYVMEF  354 (356)
Q Consensus       328 ~~~ll~~aGf~~~~~~~~~~~~~vi~~  354 (356)
                      |.++|+++||+++++.....+.+++..
T Consensus       186 ~~~~l~~aGf~~v~~~~~~~~~~~~~~  212 (219)
T 3dlc_A          186 FQNVLDEIGISSYEIILGDEGFWIIIS  212 (219)
T ss_dssp             HHHHHHHHTCSSEEEEEETTEEEEEEB
T ss_pred             HHHHHHHcCCCeEEEEecCCceEEEEe
Confidence            999999999999999988777766543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.78  E-value=2e-18  Score=148.42  Aligned_cols=155  Identities=17%  Similarity=0.179  Sum_probs=125.3

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA  252 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~  252 (356)
                      ..+++.+. ..+..+|||||||+|.++..+++.. |..+++++|. +.+++.+++.      ++++++.+|+.+ +.++.
T Consensus        27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~  105 (219)
T 3dh0_A           27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN  105 (219)
T ss_dssp             HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred             HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence            45566665 6778899999999999999999987 8889999996 8888777543      479999999988 65554


Q ss_pred             --cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018405          253 --DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSE  330 (356)
Q Consensus       253 --D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~  330 (356)
                        |+|++..++||+++  ...+|++++++|+|||++++.+..........                 .....++.++|.+
T Consensus       106 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~  166 (219)
T 3dh0_A          106 TVDFIFMAFTFHELSE--PLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGL  166 (219)
T ss_dssp             CEEEEEEESCGGGCSS--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHH
T ss_pred             CeeEEEeehhhhhcCC--HHHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHH
Confidence              99999999999965  68999999999999999999987665431100                 0122368999999


Q ss_pred             HHHHcCCcceeEEEccCceeEEEEeC
Q 018405          331 LAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       331 ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      +++++||++++..........+.++|
T Consensus       167 ~l~~~Gf~~~~~~~~~~~~~~~~~~k  192 (219)
T 3dh0_A          167 ILEDAGIRVGRVVEVGKYCFGVYAMI  192 (219)
T ss_dssp             HHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred             HHHHCCCEEEEEEeeCCceEEEEEEe
Confidence            99999999999988877777776654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.78  E-value=4e-18  Score=146.66  Aligned_cols=166  Identities=16%  Similarity=0.179  Sum_probs=119.8

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCC-CCCCC-cEEEe
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE-SVPEA-DTILM  257 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~~-D~i~~  257 (356)
                      .+++.+. ..+..+|||||||+|.++..+++.  +.+++++|. +.+++.+++.  .+++++.+|+.+ +.+.. |+|++
T Consensus        36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~  112 (220)
T 3hnr_A           36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS  112 (220)
T ss_dssp             HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred             HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence            3444444 456789999999999999999986  678999996 8787777654  489999999988 65533 99999


Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhh---hhh--hhhhcCCCccCCHHHHHHHH
Q 018405          258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISIL---DTI--CLFQVPHGRERTKQEYSELA  332 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~t~~e~~~ll  332 (356)
                      ..++||+++++...+|++++++|+|||++++.++..+....   ........   ...  .... .....++.++|.+++
T Consensus       113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l  188 (220)
T 3hnr_A          113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDA---YDKTVEAAKQRGFHQLANDL-QTEYYTRIPVMQTIF  188 (220)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHH---HHHHHHHHHHTTCHHHHHHH-HHSCCCBHHHHHHHH
T ss_pred             CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHH---HHHHHHHHHhCCCccchhhc-chhhcCCHHHHHHHH
Confidence            99999999877777999999999999999999876543210   00000000   000  0000 012345899999999


Q ss_pred             HHcCCcceeEEEccCceeEEEEeC
Q 018405          333 IKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       333 ~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      +++||+++..... ...|++++.|
T Consensus       189 ~~aGf~v~~~~~~-~~~w~~~~~~  211 (220)
T 3hnr_A          189 ENNGFHVTFTRLN-HFVWVMEATK  211 (220)
T ss_dssp             HHTTEEEEEEECS-SSEEEEEEEE
T ss_pred             HHCCCEEEEeecc-ceEEEEeehh
Confidence            9999987665444 6777776643

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.76  E-value=7.7e-18  Score=144.46  Aligned_cols=160  Identities=16%  Similarity=0.135  Sum_probs=114.3

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCCCCCC-C-cEEE
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFESVPE-A-DTIL  256 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~~~~~-~-D~i~  256 (356)
                      ..+++.+..+.+..+|||||||+|.++..+++.  +.+++++|. +.+++.+++.  ++++++.+|+.+..+. . |+|+
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~  112 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF  112 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence            445555554566789999999999999999998  568999996 8888877653  5799999999885443 3 9999


Q ss_pred             ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC-------CccCCHHHHH
Q 018405          257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH-------GRERTKQEYS  329 (356)
Q Consensus       257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~t~~e~~  329 (356)
                      +.+++||+++++...+|++++++|+|||++++.+...+..........  ........ ..+.       ....+.++|.
T Consensus       113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  189 (218)
T 3ou2_A          113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRR-TLQDGRSFRIVKVFRSPAELT  189 (218)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEE-ECTTSCEEEEECCCCCHHHHH
T ss_pred             EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceee-ecCCcchhhHhhcCCCHHHHH
Confidence            999999999888899999999999999999999876643210000000  00000000 0011       1235999999


Q ss_pred             HHHHHcCCcceeEEEcc
Q 018405          330 ELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       330 ~ll~~aGf~~~~~~~~~  346 (356)
                      ++++++||++.......
T Consensus       190 ~~l~~aGf~v~~~~~~~  206 (218)
T 3ou2_A          190 ERLTALGWSCSVDEVHP  206 (218)
T ss_dssp             HHHHHTTEEEEEEEEET
T ss_pred             HHHHHCCCEEEeeeccc
Confidence            99999999955544443

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.76  E-value=4e-18  Score=150.79  Aligned_cols=156  Identities=23%  Similarity=0.287  Sum_probs=122.2

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC--
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA--  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~--  252 (356)
                      ...+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|. +.+++.+++.    ++++++.+|+.+ +++..  
T Consensus        44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  121 (266)
T 3ujc_A           44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF  121 (266)
T ss_dssp             HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence            455666665 6778899999999999999999987 779999996 7777776554    689999999988 66544  


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA  332 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll  332 (356)
                      |+|++..++||+++++...+|++++++|+|||++++.++..+.....      ...+...... . +...++.++|.+++
T Consensus       122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~------~~~~~~~~~~-~-~~~~~~~~~~~~~l  193 (266)
T 3ujc_A          122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENW------DDEFKEYVKQ-R-KYTLITVEEYADIL  193 (266)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGC------CHHHHHHHHH-H-TCCCCCHHHHHHHH
T ss_pred             EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccc------hHHHHHHHhc-C-CCCCCCHHHHHHHH
Confidence            99999999999988889999999999999999999999876541111      0111111111 1 34467999999999


Q ss_pred             HHcCCcceeEEEcc
Q 018405          333 IKAGFKGVNYEYGA  346 (356)
Q Consensus       333 ~~aGf~~~~~~~~~  346 (356)
                      +++||+++++....
T Consensus       194 ~~~Gf~~~~~~~~~  207 (266)
T 3ujc_A          194 TACNFKNVVSKDLS  207 (266)
T ss_dssp             HHTTCEEEEEEECH
T ss_pred             HHcCCeEEEEEeCC
Confidence            99999999887653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.76  E-value=3.1e-18  Score=151.30  Aligned_cols=154  Identities=21%  Similarity=0.305  Sum_probs=116.8

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~  252 (356)
                      ...+++.++ ..+..+|||||||+|.++..+++..+  +++++|. +.+++.+++.      ++++++.+|+.+ ++++.
T Consensus        26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~  102 (260)
T 1vl5_A           26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE  102 (260)
T ss_dssp             HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred             HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence            455666666 66789999999999999999999875  8999996 8888776542      579999999988 76644


Q ss_pred             --cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc-CCCccCCHHHHH
Q 018405          253 --DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV-PHGRERTKQEYS  329 (356)
Q Consensus       253 --D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~e~~  329 (356)
                        |+|++..++||+++  ...+|++++++|+|||++++.+...+...   .   ............. .....++.++|.
T Consensus       103 ~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (260)
T 1vl5_A          103 RFHIVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPEND---A---FDVFYNYVEKERDYSHHRAWKKSDWL  174 (260)
T ss_dssp             CEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred             CEEEEEEhhhhHhcCC--HHHHHHHHHHHcCCCCEEEEEEcCCCCCH---H---HHHHHHHHHHhcCccccCCCCHHHHH
Confidence              99999999999976  68999999999999999999987765431   1   1111111111111 124557899999


Q ss_pred             HHHHHcCCcceeEEEc
Q 018405          330 ELAIKAGFKGVNYEYG  345 (356)
Q Consensus       330 ~ll~~aGf~~~~~~~~  345 (356)
                      ++|+++||+++.+...
T Consensus       175 ~~l~~aGf~~~~~~~~  190 (260)
T 1vl5_A          175 KMLEEAGFELEELHCF  190 (260)
T ss_dssp             HHHHHHTCEEEEEEEE
T ss_pred             HHHHHCCCeEEEEEEe
Confidence            9999999998877654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.76  E-value=1.2e-18  Score=150.54  Aligned_cols=161  Identities=16%  Similarity=0.164  Sum_probs=114.5

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCC-C-cEEEeccccc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPE-A-DTILMKWVLS  262 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~-~-D~i~~~~vlh  262 (356)
                      .+..+|||||||+|.++..+++..+  +++++|. +.+++.++++     .+++++.+|+.+ +.+. . |+|++..++|
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence            3578999999999999999999877  8899996 8887776543     679999999988 6554 3 9999999977


Q ss_pred             CCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCC---chhhhhhhhhhhhhhh---------hc-CC-------Ccc
Q 018405          263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN---SATSREISILDTICLF---------QV-PH-------GRE  322 (356)
Q Consensus       263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~-~~-------~~~  322 (356)
                      ++..++..++|++++++|+|||++++.++..+.....   ........+... .+.         .. .+       ...
T Consensus       115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (227)
T 1ve3_A          115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISK-VIPDQEERTVVIEFKSEQDSFRVRFNV  193 (227)
T ss_dssp             GCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCE-EEEETTTTEEEEEC-----CCEEEEEC
T ss_pred             hCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecc-cccCccccEEEEEeccchhhheeehhh
Confidence            7777788999999999999999999987653211000   000000000000 000         00 00       111


Q ss_pred             CCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          323 RTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       323 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      ++ .+|.++|+++||+.+++.......++|+.+|
T Consensus       194 w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~  226 (227)
T 1ve3_A          194 WG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP  226 (227)
T ss_dssp             CC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred             hc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence            22 4899999999999999999876778998875

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.75  E-value=2e-17  Score=144.30  Aligned_cols=150  Identities=19%  Similarity=0.332  Sum_probs=114.3

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC---CCCCC--cEE
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE---SVPEA--DTI  255 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~~--D~i  255 (356)
                      ..+...++.+++..+|||||||+|.++..+++.  +.+++++|. +.+++.++++  ++++.+|+.+   ++++.  |+|
T Consensus        30 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i  105 (240)
T 3dli_A           30 ARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGV  105 (240)
T ss_dssp             HHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEE
T ss_pred             HHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEE
Confidence            334444443557789999999999999999987  557899996 8888888754  8999999876   45543  999


Q ss_pred             EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018405          256 LMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKA  335 (356)
Q Consensus       256 ~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a  335 (356)
                      ++..++||+++++...+|++++++|+|||++++..+.....         ....... .. ......++.++|.++++++
T Consensus       106 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~-~~-~~~~~~~~~~~l~~~l~~a  174 (240)
T 3dli_A          106 MISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---------YSLINFY-ID-PTHKKPVHPETLKFILEYL  174 (240)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---------HHHHHHT-TS-TTCCSCCCHHHHHHHHHHH
T ss_pred             EECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---------HHHHHHh-cC-ccccccCCHHHHHHHHHHC
Confidence            99999999998788999999999999999999977643210         0111111 11 1134567899999999999


Q ss_pred             CCcceeEEEcc
Q 018405          336 GFKGVNYEYGA  346 (356)
Q Consensus       336 Gf~~~~~~~~~  346 (356)
                      ||+++++....
T Consensus       175 Gf~~~~~~~~~  185 (240)
T 3dli_A          175 GFRDVKIEFFE  185 (240)
T ss_dssp             TCEEEEEEEEC
T ss_pred             CCeEEEEEEec
Confidence            99999877654

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.75  E-value=1.9e-17  Score=147.16  Aligned_cols=158  Identities=13%  Similarity=0.121  Sum_probs=121.1

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP  250 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~  250 (356)
                      ....+++.++ +.+..+|||||||+|.++..+++.+ +.+++++|. +.+++.++++       ++++++.+|+.+ +++
T Consensus        49 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  126 (273)
T 3bus_A           49 LTDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE  126 (273)
T ss_dssp             HHHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred             HHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence            3456777776 7788999999999999999999887 679999996 7777766542       479999999988 666


Q ss_pred             CC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405          251 EA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY  328 (356)
Q Consensus       251 ~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~  328 (356)
                      ++  |+|++..++||+++  ...+|++++++|+|||++++.+......... .   ........... .+....++.++|
T Consensus       127 ~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-~---~~~~~~~~~~~-~~~~~~~~~~~~  199 (273)
T 3bus_A          127 DASFDAVWALESLHHMPD--RGRALREMARVLRPGGTVAIADFVLLAPVEG-A---KKEAVDAFRAG-GGVLSLGGIDEY  199 (273)
T ss_dssp             TTCEEEEEEESCTTTSSC--HHHHHHHHHTTEEEEEEEEEEEEEESSCCCH-H---HHHHHHHHHHH-HTCCCCCCHHHH
T ss_pred             CCCccEEEEechhhhCCC--HHHHHHHHHHHcCCCeEEEEEEeeccCCCCh-h---HHHHHHHHHhh-cCccCCCCHHHH
Confidence            54  99999999999966  5899999999999999999999876532111 0   01111111111 124567899999


Q ss_pred             HHHHHHcCCcceeEEEcc
Q 018405          329 SELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       329 ~~ll~~aGf~~~~~~~~~  346 (356)
                      .++++++||+++++....
T Consensus       200 ~~~l~~aGf~~~~~~~~~  217 (273)
T 3bus_A          200 ESDVRQAELVVTSTVDIS  217 (273)
T ss_dssp             HHHHHHTTCEEEEEEECH
T ss_pred             HHHHHHcCCeEEEEEECc
Confidence            999999999999877653

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.74  E-value=7.3e-18  Score=149.17  Aligned_cols=163  Identities=14%  Similarity=0.099  Sum_probs=117.1

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC-cEEEecc-cccCCCh
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA-DTILMKW-VLSSFDD  266 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-D~i~~~~-vlh~~~~  266 (356)
                      .+..+|||||||+|.++..+++..  .+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++.. ++||+++
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~  126 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG  126 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence            356899999999999999999875  47899996 8888877653 689999999988 55444 9999998 9999965


Q ss_pred             -HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhh---------h-----------hhhhhhhhhhhcCC------
Q 018405          267 -EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSR---------E-----------ISILDTICLFQVPH------  319 (356)
Q Consensus       267 -~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~------  319 (356)
                       ++...+|++++++|+|||++++.+...+..........         .           ...+.+.+.....+      
T Consensus       127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (263)
T 3pfg_A          127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH  206 (263)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence             46789999999999999999997554433211100000         0           00001111100001      


Q ss_pred             -----CccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          320 -----GRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       320 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                           .+.+|.++|.++|+++||+++++........++.++|
T Consensus       207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K  248 (263)
T 3pfg_A          207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP  248 (263)
T ss_dssp             EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence                 2346899999999999999999877766666777664

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.74  E-value=3.1e-17  Score=146.98  Aligned_cols=163  Identities=19%  Similarity=0.172  Sum_probs=119.9

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPEA  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~  252 (356)
                      ...+++.++ +.+..+|||||||+|.++..+++.++ .+++++|. +.+++.++++       ++++++.+|+.+.....
T Consensus        53 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f  130 (287)
T 1kpg_A           53 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV  130 (287)
T ss_dssp             HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence            455666665 67788999999999999999997765 49999996 7777766542       47999999987621234


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCC-----CchhhhhhhhhhhhhhhhcCCCccCCHHH
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPE-----NSATSREISILDTICLFQVPHGRERTKQE  327 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~t~~e  327 (356)
                      |+|++..++||+++++...+|++++++|+|||++++.+...+....     ...................+++..++.++
T Consensus       131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  210 (287)
T 1kpg_A          131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM  210 (287)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred             eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHH
Confidence            9999999999998777899999999999999999999887653210     00000000111111111134677789999


Q ss_pred             HHHHHHHcCCcceeEEEc
Q 018405          328 YSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       328 ~~~ll~~aGf~~~~~~~~  345 (356)
                      |.++++++||+++++...
T Consensus       211 ~~~~l~~aGf~~~~~~~~  228 (287)
T 1kpg_A          211 VQECASANGFTVTRVQSL  228 (287)
T ss_dssp             HHHHHHTTTCEEEEEEEC
T ss_pred             HHHHHHhCCcEEEEEEeC
Confidence            999999999999988765

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.74  E-value=1.5e-17  Score=149.88  Aligned_cols=156  Identities=19%  Similarity=0.219  Sum_probs=119.6

Q ss_pred             HHHHHHHHHh---cCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC
Q 018405          179 VVMEKVLESY---KGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE  247 (356)
Q Consensus       179 ~~~~~~~~~~---~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~  247 (356)
                      .....+++.+   ..+.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.++++       ++++++.+|+.+
T Consensus        65 ~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  143 (297)
T 2o57_A           65 RTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE  143 (297)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence            3445666666   137788999999999999999999986 468999996 7777776542       579999999988


Q ss_pred             -CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCC
Q 018405          248 -SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERT  324 (356)
Q Consensus       248 -~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  324 (356)
                       +++++  |+|++..++||+++  ...+|++++++|+|||++++.++..+......   .....+.   .. . .....+
T Consensus       144 ~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~~~~---~~-~-~~~~~~  213 (297)
T 2o57_A          144 IPCEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS---SIQPILD---RI-K-LHDMGS  213 (297)
T ss_dssp             CSSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---GGHHHHH---HH-T-CSSCCC
T ss_pred             CCCCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH---HHHHHHH---Hh-c-CCCCCC
Confidence             76654  99999999999976  79999999999999999999998765432111   1111111   11 1 223468


Q ss_pred             HHHHHHHHHHcCCcceeEEEc
Q 018405          325 KQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       325 ~~e~~~ll~~aGf~~~~~~~~  345 (356)
                      .++|.++++++||+++++...
T Consensus       214 ~~~~~~~l~~aGf~~~~~~~~  234 (297)
T 2o57_A          214 LGLYRSLAKECGLVTLRTFSR  234 (297)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHHHHHCCCeEEEEEEC
Confidence            999999999999999988765

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.74  E-value=2.4e-17  Score=143.79  Aligned_cols=155  Identities=18%  Similarity=0.270  Sum_probs=117.7

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPE  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~  251 (356)
                      ....+++.+. ..+..+|||||||+|.++..+++..+  +++++|. +.+++.+++.      ++++++.+|+.+ ++++
T Consensus         9 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A            9 SLGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             HHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred             CcchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence            3455666666 78889999999999999999998875  7899996 7777776542      579999999987 6654


Q ss_pred             C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhh-hhhcCCCccCCHHHH
Q 018405          252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTIC-LFQVPHGRERTKQEY  328 (356)
Q Consensus       252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~  328 (356)
                      .  |+|++..++||+++  ...+|++++++|+|||++++.+...+...   .   ......... .........++.++|
T Consensus        86 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~  157 (239)
T 1xxl_A           86 DSFDIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDP---V---LDEFVNHLNRLRDPSHVRESSLSEW  157 (239)
T ss_dssp             TCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred             CcEEEEEECCchhhccC--HHHHHHHHHHHcCCCcEEEEEEcCCCCCh---h---HHHHHHHHHHhccccccCCCCHHHH
Confidence            3  99999999999975  68999999999999999999988765431   1   111111111 110112455789999


Q ss_pred             HHHHHHcCCcceeEEEc
Q 018405          329 SELAIKAGFKGVNYEYG  345 (356)
Q Consensus       329 ~~ll~~aGf~~~~~~~~  345 (356)
                      .++++++||+++++...
T Consensus       158 ~~ll~~aGf~~~~~~~~  174 (239)
T 1xxl_A          158 QAMFSANQLAYQDIQKW  174 (239)
T ss_dssp             HHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHCCCcEEEEEee
Confidence            99999999998877654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.73  E-value=8.4e-18  Score=147.81  Aligned_cols=150  Identities=16%  Similarity=0.245  Sum_probs=116.7

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC--
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA--  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~--  252 (356)
                      ...+++.++ ..+..+|||||||+|.++..+++.. ..+++++|. +.+++.++++    ++++++.+|+.+ +++..  
T Consensus        82 ~~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T 1xtp_A           82 SRNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence            345566565 5678899999999999999999876 557999996 7777776543    579999999987 55543  


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA  332 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll  332 (356)
                      |+|++.+++||+++++...+|++++++|+|||++++.+.......         ...+.     ......++.++|.+++
T Consensus       160 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~~~~l  225 (254)
T 1xtp_A          160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDK-----EDSSLTRSDIHYKRLF  225 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEET-----TTTEEEBCHHHHHHHH
T ss_pred             EEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------ceecc-----cCCcccCCHHHHHHHH
Confidence            999999999999988899999999999999999999987543321         01110     0123357999999999


Q ss_pred             HHcCCcceeEEEcc
Q 018405          333 IKAGFKGVNYEYGA  346 (356)
Q Consensus       333 ~~aGf~~~~~~~~~  346 (356)
                      +++||+++++....
T Consensus       226 ~~aGf~~~~~~~~~  239 (254)
T 1xtp_A          226 NESGVRVVKEAFQE  239 (254)
T ss_dssp             HHHTCCEEEEEECT
T ss_pred             HHCCCEEEEeeecC
Confidence            99999999887653

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.73  E-value=6.1e-17  Score=146.21  Aligned_cols=163  Identities=23%  Similarity=0.298  Sum_probs=122.2

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPEA  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~  252 (356)
                      ...+++.+. +.+..+|||||||+|.++..+++.++ .+++++|+ +.+++.++++       ++++++.+|+.+. +..
T Consensus        61 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~  137 (302)
T 3hem_A           61 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP  137 (302)
T ss_dssp             HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred             HHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence            456677666 77888999999999999999999877 78999996 8888777543       3799999998765 433


Q ss_pred             -cEEEecccccCCCh-------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhh-----hhhhhhhhhhhhhcCC
Q 018405          253 -DTILMKWVLSSFDD-------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATS-----REISILDTICLFQVPH  319 (356)
Q Consensus       253 -D~i~~~~vlh~~~~-------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  319 (356)
                       |+|++..++||+++       ++...+|++++++|+|||++++.+...+.........     ......++......++
T Consensus       138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  217 (302)
T 3hem_A          138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG  217 (302)
T ss_dssp             CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred             ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCC
Confidence             99999999999944       5678999999999999999999988765421000000     0000011111112356


Q ss_pred             CccCCHHHHHHHHHHcCCcceeEEEcc
Q 018405          320 GRERTKQEYSELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       320 ~~~~t~~e~~~ll~~aGf~~~~~~~~~  346 (356)
                      +..++.+++.++++++||+++++....
T Consensus       218 ~~~~s~~~~~~~l~~aGf~~~~~~~~~  244 (302)
T 3hem_A          218 GRLPRISQVDYYSSNAGWKVERYHRIG  244 (302)
T ss_dssp             CCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             CCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence            778899999999999999999887654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.73  E-value=1.7e-17  Score=146.11  Aligned_cols=153  Identities=13%  Similarity=0.064  Sum_probs=116.9

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPE  251 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~  251 (356)
                      ...+++.+. ..+..+|||||||+|..+..+++.+ +.+++++|. +.+++.++++       ++++++.+|+.+ +.+.
T Consensus        25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  102 (256)
T 1nkv_A           25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE  102 (256)
T ss_dssp             HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence            455666666 7788999999999999999999987 678999996 8887777542       479999999988 4433


Q ss_pred             C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018405          252 A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSE  330 (356)
Q Consensus       252 ~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~  330 (356)
                      . |+|++..++||+++  ..++|++++++|+|||++++.++.........   ..   .... .. ......++.++|.+
T Consensus       103 ~fD~V~~~~~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~---~~---~~~~-~~-~~~~~~~~~~~~~~  172 (256)
T 1nkv_A          103 KCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATE---EI---AQAC-GV-SSTSDFLTLPGLVG  172 (256)
T ss_dssp             CEEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSH---HH---HHTT-TC-SCGGGSCCHHHHHH
T ss_pred             CCCEEEECCChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChH---HH---HHHH-hc-ccccccCCHHHHHH
Confidence            3 99999999999965  78999999999999999999987665432111   00   0000 00 01224578999999


Q ss_pred             HHHHcCCcceeEEEc
Q 018405          331 LAIKAGFKGVNYEYG  345 (356)
Q Consensus       331 ll~~aGf~~~~~~~~  345 (356)
                      +++++||+++++...
T Consensus       173 ~l~~aGf~~~~~~~~  187 (256)
T 1nkv_A          173 AFDDLGYDVVEMVLA  187 (256)
T ss_dssp             HHHTTTBCCCEEEEC
T ss_pred             HHHHCCCeeEEEEeC
Confidence            999999999887653

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.72  E-value=8.6e-17  Score=142.17  Aligned_cols=153  Identities=10%  Similarity=0.086  Sum_probs=116.7

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC--cEE
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTI  255 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i  255 (356)
                      ....+++.++ ..+..+|||||||+|.++..+++  ++.+++++|. +.+++.++...+++++.+|+.+ +++..  |+|
T Consensus        22 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v   98 (261)
T 3ege_A           22 IVNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGV   98 (261)
T ss_dssp             HHHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEE
T ss_pred             HHHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEE
Confidence            3455666665 66789999999999999999998  7889999996 8899999887899999999988 66543  999


Q ss_pred             EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018405          256 LMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKA  335 (356)
Q Consensus       256 ~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a  335 (356)
                      ++.+++||+++  ...+|++++++|+ ||++++.+...+.....    .....+..... .. ....++.+++. +++++
T Consensus        99 ~~~~~l~~~~~--~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~-~~~~~~~~~~~-~l~~a  168 (261)
T 3ege_A           99 ISILAIHHFSH--LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRI----WLYDYFPFLWE-DA-LRFLPLDEQIN-LLQEN  168 (261)
T ss_dssp             EEESCGGGCSS--HHHHHHHHHHHBC-SSCEEEEEECGGGCCCC----GGGGTCHHHHH-HH-HTSCCHHHHHH-HHHHH
T ss_pred             EEcchHhhccC--HHHHHHHHHHHhC-CcEEEEEEcCCchhHHH----HHHHHHHHHhh-hh-hhhCCCHHHHH-HHHHc
Confidence            99999999955  7899999999999 99999988754332111    00011110000 01 23345778899 99999


Q ss_pred             CCcceeEEEc
Q 018405          336 GFKGVNYEYG  345 (356)
Q Consensus       336 Gf~~~~~~~~  345 (356)
                      ||+.+++...
T Consensus       169 GF~~v~~~~~  178 (261)
T 3ege_A          169 TKRRVEAIPF  178 (261)
T ss_dssp             HCSEEEEEEC
T ss_pred             CCCceeEEEe
Confidence            9999887665

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.72  E-value=3.6e-17  Score=142.33  Aligned_cols=163  Identities=15%  Similarity=0.135  Sum_probs=116.4

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC-cEEEe-cccccCCCh
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA-DTILM-KWVLSSFDD  266 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-D~i~~-~~vlh~~~~  266 (356)
                      .+..+|||||||+|.++..+++..+  +++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++ ..++||+++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~  116 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT  116 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence            4678999999999999999999876  7899996 8888877654 679999999988 55444 99995 559999854


Q ss_pred             -HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhh--------------------hhhhhhhhhhhhcCC------
Q 018405          267 -EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSR--------------------EISILDTICLFQVPH------  319 (356)
Q Consensus       267 -~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~------  319 (356)
                       ++...+|++++++|+|||++++.+...++.........                    ......+.++....+      
T Consensus       117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (239)
T 3bxo_A          117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF  196 (239)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence             57889999999999999999997765543211100000                    000000111100001      


Q ss_pred             -----CccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          320 -----GRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       320 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                           .+.+|+++|.++|+++||++..+....+...+++++|
T Consensus       197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K  238 (239)
T 3bxo_A          197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP  238 (239)
T ss_dssp             EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred             EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence                 1346999999999999998777665556777888875

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.72  E-value=1.4e-17  Score=141.44  Aligned_cols=137  Identities=18%  Similarity=0.147  Sum_probs=110.9

Q ss_pred             CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--cEEEecccccCCChHH
Q 018405          194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQ  268 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~  268 (356)
                      ..+|||||||+|.++..+++.  +.+++++|. +.+++.++++ ++++++.+|+.+ +.+..  |+|++.+++||++.++
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~  119 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE  119 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence            689999999999999999987  558999996 8888877653 689999999988 65543  9999999999998778


Q ss_pred             HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEcc
Q 018405          269 SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       269 ~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~  346 (356)
                      ...+|++++++|+|||++++.....+...          .+..   . ......++.++|.++++++||+++++....
T Consensus       120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~----------~~~~---~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  183 (203)
T 3h2b_A          120 LPDALVALRMAVEDGGGLLMSFFSGPSLE----------PMYH---P-VATAYRWPLPELAQALETAGFQVTSSHWDP  183 (203)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEECCSSCE----------EECC---S-SSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEccCCchh----------hhhc---h-hhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence            99999999999999999999876544310          0000   0 012345789999999999999999987764

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.72  E-value=8.1e-17  Score=146.48  Aligned_cols=164  Identities=17%  Similarity=0.209  Sum_probs=120.9

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~  251 (356)
                      ....+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|. +.+++.+++.       ++++++.+|+.+....
T Consensus        78 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  155 (318)
T 2fk8_A           78 KVDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEP  155 (318)
T ss_dssp             HHHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCC
T ss_pred             HHHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCC
Confidence            3456666665 6778899999999999999999886 569999996 8877776543       4699999998763223


Q ss_pred             CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCc----hhh-hhhhhhhhhhhhhcCCCccCCHH
Q 018405          252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENS----ATS-REISILDTICLFQVPHGRERTKQ  326 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~t~~  326 (356)
                      .|+|++..++||+++++...+|++++++|+|||++++.++..+......    +.. ......++......+++..++.+
T Consensus       156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  235 (318)
T 2fk8_A          156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE  235 (318)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred             cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHH
Confidence            4999999999999877899999999999999999999988765421000    000 00001111111112456778999


Q ss_pred             HHHHHHHHcCCcceeEEEc
Q 018405          327 EYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       327 e~~~ll~~aGf~~~~~~~~  345 (356)
                      ++.++++++||+++++...
T Consensus       236 ~~~~~l~~aGf~~~~~~~~  254 (318)
T 2fk8_A          236 MMVEHGEKAGFTVPEPLSL  254 (318)
T ss_dssp             HHHHHHHHTTCBCCCCEEC
T ss_pred             HHHHHHHhCCCEEEEEEec
Confidence            9999999999999987664

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.72  E-value=7.9e-17  Score=146.19  Aligned_cols=162  Identities=10%  Similarity=0.042  Sum_probs=121.6

Q ss_pred             HhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEcc
Q 018405          173 MLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGD  244 (356)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D  244 (356)
                      +..........+++.++.+.+..+|||||||+|.++..+++.+ +.+++++|. +.+++.++++       ++++++.+|
T Consensus        97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  175 (312)
T 3vc1_A           97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN  175 (312)
T ss_dssp             HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence            3344444445666666546678899999999999999999985 578999996 8888777542       479999999


Q ss_pred             CCC-CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCc
Q 018405          245 FFE-SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGR  321 (356)
Q Consensus       245 ~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (356)
                      +.+ +++..  |+|++..++||++   ...+|++++++|+|||++++.+........... .    ..........  ..
T Consensus       176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~----~~~~~~~~~~--~~  245 (312)
T 3vc1_A          176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-K----WVSQINAHFE--CN  245 (312)
T ss_dssp             TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-H----HHHHHHHHHT--CC
T ss_pred             hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-H----HHHHHHhhhc--CC
Confidence            988 66643  9999999999993   799999999999999999999877655321110 1    1111111111  23


Q ss_pred             cCCHHHHHHHHHHcCCcceeEEEc
Q 018405          322 ERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       322 ~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                      .++.++|.++++++||+++++...
T Consensus       246 ~~s~~~~~~~l~~aGf~~~~~~~~  269 (312)
T 3vc1_A          246 IHSRREYLRAMADNRLVPHTIVDL  269 (312)
T ss_dssp             CCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEeC
Confidence            578999999999999999988765

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.72  E-value=3.6e-17  Score=144.02  Aligned_cols=153  Identities=14%  Similarity=0.077  Sum_probs=116.5

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPE  251 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~  251 (356)
                      ...++..+..+.+..+|||||||+|..+..+++..+. +++++|. +.+++.++++       ++++++.+|+.+ +++.
T Consensus        34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  112 (257)
T 3f4k_A           34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN  112 (257)
T ss_dssp             HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCT
T ss_pred             HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCC
Confidence            3445555544667789999999999999999999986 9999996 7777766542       459999999987 6554


Q ss_pred             C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018405          252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYS  329 (356)
Q Consensus       252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~  329 (356)
                      .  |+|++..++||++   ...+|++++++|+|||++++.++.........      .....+...   ....++.++|.
T Consensus       113 ~~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~  180 (257)
T 3f4k_A          113 EELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMDA---YPEISVIPTCI  180 (257)
T ss_dssp             TCEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCCBHHHHH
T ss_pred             CCEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHHh---CCCCCCHHHHH
Confidence            3  9999999999983   57899999999999999999987644332111      111111111   12357899999


Q ss_pred             HHHHHcCCcceeEEEcc
Q 018405          330 ELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       330 ~ll~~aGf~~~~~~~~~  346 (356)
                      ++++++||+++.....+
T Consensus       181 ~~l~~aGf~~v~~~~~~  197 (257)
T 3f4k_A          181 DKMERAGYTPTAHFILP  197 (257)
T ss_dssp             HHHHHTTEEEEEEEECC
T ss_pred             HHHHHCCCeEEEEEECC
Confidence            99999999999887664

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.71  E-value=1.8e-17  Score=147.63  Aligned_cols=153  Identities=18%  Similarity=0.291  Sum_probs=113.8

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC--cEEEeccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA--DTILMKWV  260 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~v  260 (356)
                      +.+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++      ++++++.+|+.+ +++..  |+|++.++
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence            56789999999999999999999999999999996 8887776543      579999999988 55543  99999999


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh-hhhhhcCCCccCCHHHHHHHHHHcCCcc
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT-ICLFQVPHGRERTKQEYSELAIKAGFKG  339 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~~e~~~ll~~aGf~~  339 (356)
                      +||+++  ...+|++++++|+|||++++.+.........+........... .......++..++..+|.++|+++||++
T Consensus       115 l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~  192 (276)
T 3mgg_A          115 LEHLQS--PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK  192 (276)
T ss_dssp             GGGCSC--HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEE
T ss_pred             hhhcCC--HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCe
Confidence            999976  5699999999999999999988643221000000011111111 1111112455567889999999999999


Q ss_pred             eeEEEc
Q 018405          340 VNYEYG  345 (356)
Q Consensus       340 ~~~~~~  345 (356)
                      +++.+.
T Consensus       193 v~~~~~  198 (276)
T 3mgg_A          193 IRVEPR  198 (276)
T ss_dssp             EEEEEE
T ss_pred             EEEeeE
Confidence            987754

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.71  E-value=3e-17  Score=145.55  Aligned_cols=152  Identities=16%  Similarity=0.060  Sum_probs=116.8

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA  252 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~  252 (356)
                      ..++..+..+.+..+|||||||+|.++..+++. +..+++++|+ +.+++.++++       ++++++.+|+.+ +++..
T Consensus        35 ~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (267)
T 3kkz_A           35 LKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNE  113 (267)
T ss_dssp             HHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred             HHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCC
Confidence            344554444567899999999999999999998 8889999996 8877776543       569999999988 65543


Q ss_pred             --cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018405          253 --DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSE  330 (356)
Q Consensus       253 --D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~  330 (356)
                        |+|++..++||+ +  ...+|++++++|+|||++++.+...........      ....+.. .  ....++.+++.+
T Consensus       114 ~fD~i~~~~~~~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~-~--~~~~~~~~~~~~  181 (267)
T 3kkz_A          114 ELDLIWSEGAIYNI-G--FERGLNEWRKYLKKGGYLAVSECSWFTDERPAE------INDFWMD-A--YPEIDTIPNQVA  181 (267)
T ss_dssp             CEEEEEESSCGGGT-C--HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH------HHHHHHH-H--CTTCEEHHHHHH
T ss_pred             CEEEEEEcCCceec-C--HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHH------HHHHHHH-h--CCCCCCHHHHHH
Confidence              999999999999 3  588999999999999999999986543322111      1111111 1  224568999999


Q ss_pred             HHHHcCCcceeEEEcc
Q 018405          331 LAIKAGFKGVNYEYGA  346 (356)
Q Consensus       331 ll~~aGf~~~~~~~~~  346 (356)
                      +++++||+++++...+
T Consensus       182 ~l~~aGf~~v~~~~~~  197 (267)
T 3kkz_A          182 KIHKAGYLPVATFILP  197 (267)
T ss_dssp             HHHHTTEEEEEEEECC
T ss_pred             HHHHCCCEEEEEEECC
Confidence            9999999999887765

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.70  E-value=2e-16  Score=137.86  Aligned_cols=142  Identities=16%  Similarity=0.170  Sum_probs=109.6

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCCC--cEEEecccccCC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPEA--DTILMKWVLSSF  264 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~  264 (356)
                      ++..+|||||||+|.++..+++.  +.+++++|. +.+++.+++.   .+++++.+|+.+ +.+..  |+|++.+++||+
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  129 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT  129 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence            46789999999999999999997  568999996 8888777654   689999999988 66544  999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405          265 DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       265 ~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  344 (356)
                      ++  ...+|++++++|+|||++++.+.........   .    .+...... ......++++++.++++++||++++...
T Consensus       130 ~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~----~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  199 (242)
T 3l8d_A          130 EE--PLRALNEIKRVLKSDGYACIAILGPTAKPRE---N----SYPRLYGK-DVVCNTMMPWEFEQLVKEQGFKVVDGIG  199 (242)
T ss_dssp             SC--HHHHHHHHHHHEEEEEEEEEEEECTTCGGGG---G----GGGGGGTC-CCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             cC--HHHHHHHHHHHhCCCeEEEEEEcCCcchhhh---h----hhhhhccc-cccccCCCHHHHHHHHHHcCCEEEEeec
Confidence            65  6899999999999999999988654332100   0    11111110 1124457899999999999999998775


Q ss_pred             c
Q 018405          345 G  345 (356)
Q Consensus       345 ~  345 (356)
                      .
T Consensus       200 ~  200 (242)
T 3l8d_A          200 V  200 (242)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.70  E-value=3e-17  Score=135.30  Aligned_cols=146  Identities=14%  Similarity=0.173  Sum_probs=115.4

Q ss_pred             HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-CCCceEEEccCCCCCCCC--cEEEecc
Q 018405          184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-YLGIEHVGGDFFESVPEA--DTILMKW  259 (356)
Q Consensus       184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~~~~~--D~i~~~~  259 (356)
                      +++.++ ..+..+|||||||+|.++..+++...  +++++|. +.+++.+++ .+++++..+|  .+.+..  |+|++..
T Consensus         9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~   83 (170)
T 3i9f_A            9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN   83 (170)
T ss_dssp             THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred             HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence            344455 66788999999999999999999874  8999996 777777765 4789999999  444433  9999999


Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcc
Q 018405          260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKG  339 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~  339 (356)
                      ++||+++  ...+|++++++|+|||++++.+..........                 +....++.++|.++++  ||++
T Consensus        84 ~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~  142 (170)
T 3i9f_A           84 SFHDMDD--KQHVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVV  142 (170)
T ss_dssp             CSTTCSC--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEE
T ss_pred             chhcccC--HHHHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEE
Confidence            9999965  68999999999999999999987655421110                 0122368999999999  9999


Q ss_pred             eeEEEccCceeEEEEe
Q 018405          340 VNYEYGACNLYVMEFL  355 (356)
Q Consensus       340 ~~~~~~~~~~~vi~~~  355 (356)
                      ++..........+.+.
T Consensus       143 ~~~~~~~~~~~~l~~~  158 (170)
T 3i9f_A          143 EKRFNPTPYHFGLVLK  158 (170)
T ss_dssp             EEEECSSTTEEEEEEE
T ss_pred             EEccCCCCceEEEEEe
Confidence            9999887776666654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.70  E-value=6.3e-17  Score=138.27  Aligned_cols=138  Identities=17%  Similarity=0.154  Sum_probs=109.7

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC-cEEEecccccCCChH
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA-DTILMKWVLSSFDDE  267 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~~~  267 (356)
                      +.+..+|||||||+|.++..+++.  +.+++++|. +.+++.++++.++.++.+|+.. +.+.. |+|++..++||++++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~  118 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD  118 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence            456789999999999999999986  568999996 8888887765578899999887 53333 999999999999988


Q ss_pred             HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC-CcceeEEEc
Q 018405          268 QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAG-FKGVNYEYG  345 (356)
Q Consensus       268 ~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~~  345 (356)
                      +...+|++++++|+|||++++..........        ....       .....++.++|.++++++| |+++++...
T Consensus       119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--------~~~~-------~~~~~~~~~~~~~~l~~aG~f~~~~~~~~  182 (211)
T 3e23_A          119 ELADVLKLIWRALKPGGLFYASYKSGEGEGR--------DKLA-------RYYNYPSEEWLRARYAEAGTWASVAVESS  182 (211)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEECCSSCEE--------CTTS-------CEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEEcCCCcccc--------cccc-------hhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence            8999999999999999999997654332100        0000       0123468999999999999 999987764

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.70  E-value=4.9e-17  Score=147.06  Aligned_cols=165  Identities=17%  Similarity=0.185  Sum_probs=118.0

Q ss_pred             CCCCceEEEEcCCccHHHHHHH-HhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecc
Q 018405          191 FEHVKKLVDVGGGLGATLNMII-SKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKW  259 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~  259 (356)
                      +.+..+|||||||+|..+..++ ...|+.+++++|. +.+++.++++       ++++++.+|+.+ +++.. |+|++..
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            5678899999999999999986 6789999999996 8887776542       359999999988 65644 9999999


Q ss_pred             cccCCChH-HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhh--------hhhhhhhhhhcCC--CccCCHHHH
Q 018405          260 VLSSFDDE-QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREI--------SILDTICLFQVPH--GRERTKQEY  328 (356)
Q Consensus       260 vlh~~~~~-~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~t~~e~  328 (356)
                      ++||+++. ....+|++++++|+|||++++.+...+....... .+..        ......+......  ...++.+++
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDS-PWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT  274 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTC-CCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccc-cceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence            99999654 3457999999999999999998876543321110 0000        0000000000001  134799999


Q ss_pred             HHHHHHcCCcceeEEEccCc-eeEEEEeC
Q 018405          329 SELAIKAGFKGVNYEYGACN-LYVMEFLK  356 (356)
Q Consensus       329 ~~ll~~aGf~~~~~~~~~~~-~~vi~~~~  356 (356)
                      .++++++||+++++...... ...+.++|
T Consensus       275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~K  303 (305)
T 3ocj_A          275 RAQLEEAGFTDLRFEDDRARLFPTVIARK  303 (305)
T ss_dssp             HHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred             HHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence            99999999999998875433 34555554

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.70  E-value=4.7e-17  Score=145.69  Aligned_cols=162  Identities=14%  Similarity=0.117  Sum_probs=115.2

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-  252 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-  252 (356)
                      ..+++.+..+.+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.++++     .+++++.+|+.+ +.++. 
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f   90 (284)
T 3gu3_A           11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY   90 (284)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred             HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCe
Confidence            444555544667899999999999999999999985 89999996 7777766542     379999999998 55554 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc-----CC--CCCCc-hhhhhhhhhhhhhhhh-cCCCccC
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI-----PE--VPENS-ATSREISILDTICLFQ-VPHGRER  323 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~-----~~--~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~  323 (356)
                      |+|++..++||+++  ...+|++++++|+|||++++.++..     .-  +.... .......+..+..... ..+....
T Consensus        91 D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (284)
T 3gu3_A           91 DIAICHAFLLHMTT--PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN  168 (284)
T ss_dssp             EEEEEESCGGGCSS--HHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTT
T ss_pred             eEEEECChhhcCCC--HHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhccccc
Confidence            99999999999976  5899999999999999999998761     10  00000 0000111111111000 1133445


Q ss_pred             CHHHHHHHHHHcCCcceeEEEc
Q 018405          324 TKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       324 t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                      +.+++.+++++|||+.++....
T Consensus       169 ~~~~l~~~l~~aGF~~v~~~~~  190 (284)
T 3gu3_A          169 IGMKIPIYLSELGVKNIECRVS  190 (284)
T ss_dssp             GGGTHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCeEEEEEc
Confidence            6778999999999999876443

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.70  E-value=7.4e-17  Score=141.04  Aligned_cols=144  Identities=19%  Similarity=0.175  Sum_probs=106.7

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-C-CceEEEccCCCCCCC-C-cEEEecccccCCCh
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-L-GIEHVGGDFFESVPE-A-DTILMKWVLSSFDD  266 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-~v~~~~~D~~~~~~~-~-D~i~~~~vlh~~~~  266 (356)
                      .+..+|||||||+|.++..+++..+  +++++|. +.+++.+++. . +++++.+|+.+..++ . |+|++.+++||+++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  118 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD  118 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence            4667999999999999999999776  6888896 7777777643 2 899999998874333 3 99999999999976


Q ss_pred             HHHHHHHHHHH-HhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh---------hhhhhcCCCccCCHHHHHHHHHHcC
Q 018405          267 EQSLKLLKNCY-KALPDGGKLLNVNVTIPEVPENSATSREISILDT---------ICLFQVPHGRERTKQEYSELAIKAG  336 (356)
Q Consensus       267 ~~~~~~L~~~~-~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~t~~e~~~ll~~aG  336 (356)
                        ...+|++++ ++|+|||++++.++.....     ..........         .... ......++.++|.++++++|
T Consensus       119 --~~~~l~~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~G  190 (250)
T 2p7i_A          119 --PVALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFA-HGHRCTYALDTLERDASRAG  190 (250)
T ss_dssp             --HHHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHH-TTCCCCCCHHHHHHHHHHTT
T ss_pred             --HHHHHHHHHHHhcCCCCEEEEEcCChHHH-----HHHHHHHcCccccchhccccccc-ccccccCCHHHHHHHHHHCC
Confidence              589999999 9999999999987643321     0000000000         0001 11345679999999999999


Q ss_pred             CcceeEEEc
Q 018405          337 FKGVNYEYG  345 (356)
Q Consensus       337 f~~~~~~~~  345 (356)
                      |+++++...
T Consensus       191 f~~~~~~~~  199 (250)
T 2p7i_A          191 LQVTYRSGI  199 (250)
T ss_dssp             CEEEEEEEE
T ss_pred             CeEEEEeee
Confidence            999987653

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.70  E-value=2.9e-16  Score=139.60  Aligned_cols=151  Identities=17%  Similarity=0.206  Sum_probs=112.8

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCc---cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCCC-----
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGL---GATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFES-----  248 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~~-----  248 (356)
                      ..+++.+....+..+|||||||+   |.++..+.+.+|+.+++++|+ |.+++.++++    ++++++.+|+.++     
T Consensus        66 ~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~  145 (274)
T 2qe6_A           66 VRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILN  145 (274)
T ss_dssp             HHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHH
T ss_pred             HHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhc
Confidence            34444443123568999999999   998888888899999999997 8888877643    6899999999762     


Q ss_pred             -------C--CCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC
Q 018405          249 -------V--PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH  319 (356)
Q Consensus       249 -------~--~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (356)
                             +  ...|+|++..+|||+++++...+|++++++|+|||+|++.+...+.   ...   .......+..... .
T Consensus       146 ~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~---~~~~~~~~~~~~~-~  218 (274)
T 2qe6_A          146 HPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPA---QQKLARITRENLG-E  218 (274)
T ss_dssp             SHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHH---HHHHHHHHHHHHS-C
T ss_pred             cchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHH---HHHHHHHHHhcCC-C
Confidence                   2  2349999999999999888999999999999999999999876532   111   1112222221112 3


Q ss_pred             CccCCHHHHHHHHHHcCCccee
Q 018405          320 GRERTKQEYSELAIKAGFKGVN  341 (356)
Q Consensus       320 ~~~~t~~e~~~ll~~aGf~~~~  341 (356)
                      ...++.+++.++|  +||++++
T Consensus       219 ~~~~s~~ei~~~l--~G~~l~~  238 (274)
T 2qe6_A          219 GWARTPEEIERQF--GDFELVE  238 (274)
T ss_dssp             CCCBCHHHHHHTT--TTCEECT
T ss_pred             CccCCHHHHHHHh--CCCeEcc
Confidence            5568999999999  5998775

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.69  E-value=5.5e-17  Score=137.92  Aligned_cols=141  Identities=9%  Similarity=0.065  Sum_probs=107.7

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------------------CCceEEEc
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------------------LGIEHVGG  243 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~v~~~~~  243 (356)
                      .+++.+. +.+..+|||+|||+|..+..+++.  +.+++++|+ +.+++.|+++                  .+++++++
T Consensus        13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   89 (203)
T 1pjz_A           13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   89 (203)
T ss_dssp             HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence            4445554 567789999999999999999986  568999996 8888777532                  47999999


Q ss_pred             cCCC-CCC--CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC
Q 018405          244 DFFE-SVP--EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH  319 (356)
Q Consensus       244 D~~~-~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (356)
                      |+.+ +.+  .. |+|++..++|++++++..+++++++++|+|||+++++....+...          . .      . .
T Consensus        90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~----------~-~------~-~  151 (203)
T 1pjz_A           90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL----------L-E------G-P  151 (203)
T ss_dssp             CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS----------S-S------S-C
T ss_pred             ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc----------c-C------C-C
Confidence            9998 544  23 999999999999988888999999999999999555543332110          0 0      0 1


Q ss_pred             CccCCHHHHHHHHHHcCCcceeEEEc
Q 018405          320 GRERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       320 ~~~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                      ....+.+++.+++++ ||+++.+...
T Consensus       152 ~~~~~~~el~~~~~~-gf~i~~~~~~  176 (203)
T 1pjz_A          152 PFSVPQTWLHRVMSG-NWEVTKVGGQ  176 (203)
T ss_dssp             CCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred             CCCCCHHHHHHHhcC-CcEEEEeccc
Confidence            112578999999998 9998876654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.69  E-value=4.1e-17  Score=142.44  Aligned_cols=138  Identities=18%  Similarity=0.233  Sum_probs=110.4

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC--cEEEeccccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA--DTILMKWVLS  262 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~vlh  262 (356)
                      +..+|||||||+|.++..+++.. ..+++++|. +.+++.++++      .+++++.+|+.+ +.+..  |+|++..++|
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            57899999999999999998876 568999996 8887777543      258899999877 55543  9999999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeE
Q 018405          263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNY  342 (356)
Q Consensus       263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~  342 (356)
                      |+++++...+|++++++|+|||++++.+...+..          ..++.     ......++.++|.++++++||+++++
T Consensus       158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----------~~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~  222 (241)
T 2ex4_A          158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG----------VILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE  222 (241)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS----------EEEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc----------ceecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence            9998878899999999999999999998776531          01110     11233468999999999999999998


Q ss_pred             EEcc
Q 018405          343 EYGA  346 (356)
Q Consensus       343 ~~~~  346 (356)
                      ....
T Consensus       223 ~~~~  226 (241)
T 2ex4_A          223 ERQE  226 (241)
T ss_dssp             EECC
T ss_pred             eecC
Confidence            7653

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.69  E-value=6.2e-17  Score=145.97  Aligned_cols=174  Identities=11%  Similarity=0.091  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---------CCceEEEccCCC
Q 018405          178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---------LGIEHVGGDFFE  247 (356)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~  247 (356)
                      ......+++.++ . +..+|||||||+|.++..+++.  +.+++++|. +.+++.++++         .+++++.+|+.+
T Consensus        69 ~~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  144 (299)
T 3g2m_A           69 TSEAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA  144 (299)
T ss_dssp             HHHHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB
T ss_pred             cHHHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc
Confidence            344556666665 3 3459999999999999999987  568999996 8888877643         579999999998


Q ss_pred             -CCCCC-cEEEe-cccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCC--chhhhh----hhhh---------
Q 018405          248 -SVPEA-DTILM-KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN--SATSRE----ISIL---------  309 (356)
Q Consensus       248 -~~~~~-D~i~~-~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~--~~~~~~----~~~~---------  309 (356)
                       +.++. |+|++ ..++|++++++...+|++++++|+|||+|++.....+.....  .....+    ...+         
T Consensus       145 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  224 (299)
T 3g2m_A          145 FALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA  224 (299)
T ss_dssp             CCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred             CCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence             65554 98886 577888887788999999999999999999976544311000  000000    0000         


Q ss_pred             ----hhhhhh----------hcCCCccCCHHHHHHHHHHcCCcceeEEEccC------ceeEEEEe
Q 018405          310 ----DTICLF----------QVPHGRERTKQEYSELAIKAGFKGVNYEYGAC------NLYVMEFL  355 (356)
Q Consensus       310 ----~~~~~~----------~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~------~~~vi~~~  355 (356)
                          .+.+..          .....+.+|.++|.++|+++||+++++.+...      ...++|+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~  290 (299)
T 3g2m_A          225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV  290 (299)
T ss_dssp             EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred             ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence                000000          00011246999999999999999999988752      24566654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.68  E-value=1.8e-16  Score=147.86  Aligned_cols=144  Identities=22%  Similarity=0.278  Sum_probs=112.1

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC--------------CCceEEEccCCC-------C
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY--------------LGIEHVGGDFFE-------S  248 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~-------~  248 (356)
                      .+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.++++              ++++++.+|+.+       +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            366899999999999999999987 7889999996 8888777653              589999999987       4


Q ss_pred             CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHH
Q 018405          249 VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQ  326 (356)
Q Consensus       249 ~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  326 (356)
                      +++.  |+|++..++|++++  ...+|++++++|+|||++++.+...+.....    ..  ......... ..+..++.+
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~----~~--~~~~~~~~~-~~~~~~~~~  232 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSE----AA--QQDPILYGE-CLGGALYLE  232 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCH----HH--HHCHHHHHT-TCTTCCBHH
T ss_pred             CCCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCH----hH--hhhHHHhhc-ccccCCCHH
Confidence            4443  99999999999976  6899999999999999999998776542111    00  111111111 134557899


Q ss_pred             HHHHHHHHcCCcceeEEE
Q 018405          327 EYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       327 e~~~ll~~aGf~~~~~~~  344 (356)
                      +|.++|+++||+.+++..
T Consensus       233 ~~~~ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          233 DFRRLVAEAGFRDVRLVS  250 (383)
T ss_dssp             HHHHHHHHTTCCCEEEEE
T ss_pred             HHHHHHHHCCCceEEEEe
Confidence            999999999999887654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.68  E-value=1.6e-16  Score=138.04  Aligned_cols=132  Identities=20%  Similarity=0.245  Sum_probs=107.0

Q ss_pred             CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC-C-cEEEecccccC
Q 018405          194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE-A-DTILMKWVLSS  263 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~-~-D~i~~~~vlh~  263 (356)
                      ..+|||||||+|.++..+++  ++.+++++|. +.+++.++++       .+++++.+|+.+..+. . |+|++..++|+
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA  144 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence            36999999999999999876  6778999996 8777776543       3599999999983333 3 99999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE  343 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  343 (356)
                      +++++...+|++++++|+|||++++.+.........                   ....++.++|.++|+++||+++++.
T Consensus       145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~  205 (235)
T 3lcc_A          145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVE  205 (235)
T ss_dssp             SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEE
Confidence            998789999999999999999999987654321100                   1122689999999999999999887


Q ss_pred             Ecc
Q 018405          344 YGA  346 (356)
Q Consensus       344 ~~~  346 (356)
                      ..+
T Consensus       206 ~~~  208 (235)
T 3lcc_A          206 ENP  208 (235)
T ss_dssp             ECT
T ss_pred             ecC
Confidence            764

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.67  E-value=3.4e-16  Score=134.28  Aligned_cols=149  Identities=12%  Similarity=0.094  Sum_probs=106.1

Q ss_pred             HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----------CCceEEEccCCC-CCC
Q 018405          184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----------LGIEHVGGDFFE-SVP  250 (356)
Q Consensus       184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~~  250 (356)
                      +++.+. ..+..+|||||||+|.++..+++..|..+++++|. +.+++.++++           ++++++.+|+.. +.+
T Consensus        21 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~   99 (217)
T 3jwh_A           21 VVAALK-QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR   99 (217)
T ss_dssp             HHHHHH-HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG
T ss_pred             HHHHHH-hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc
Confidence            333343 44678999999999999999999989899999996 8887777543           279999999866 433


Q ss_pred             -C-CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405          251 -E-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY  328 (356)
Q Consensus       251 -~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~  328 (356)
                       . .|+|++..++||+++++..++|++++++|+|||.+++.......       ..+ .......+........++++++
T Consensus       100 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~l  171 (217)
T 3jwh_A          100 FHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYN-------VKF-ANLPAGKLRHKDHRFEWTRSQF  171 (217)
T ss_dssp             GCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHH-------HHT-C-----------CCSCBCHHHH
T ss_pred             CCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccc-------hhh-cccccccccccccccccCHHHH
Confidence             2 39999999999999888899999999999999977765432100       000 0000000000112334689998


Q ss_pred             H----HHHHHcCCccee
Q 018405          329 S----ELAIKAGFKGVN  341 (356)
Q Consensus       329 ~----~ll~~aGf~~~~  341 (356)
                      .    ++++++||++..
T Consensus       172 ~~~~~~~~~~~Gf~v~~  188 (217)
T 3jwh_A          172 QNWANKITERFAYNVQF  188 (217)
T ss_dssp             HHHHHHHHHHSSEEEEE
T ss_pred             HHHHHHHHHHcCceEEE
Confidence            8    899999998754

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.67  E-value=3e-16  Score=134.78  Aligned_cols=151  Identities=16%  Similarity=0.134  Sum_probs=107.2

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----------CCceEEEccCCC-CC
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----------LGIEHVGGDFFE-SV  249 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~  249 (356)
                      .+++.+. ..+..+|||||||+|.++..+++..|..+++++|. +.+++.++++           ++++++.+|+.. +.
T Consensus        20 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~   98 (219)
T 3jwg_A           20 TVVAVLK-SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK   98 (219)
T ss_dssp             HHHHHHH-HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred             HHHHHHh-hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence            3334343 34678999999999999999999999899999996 8888877643           289999999966 43


Q ss_pred             CC--CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHH
Q 018405          250 PE--ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQE  327 (356)
Q Consensus       250 ~~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e  327 (356)
                      +.  .|+|++..++||+++++..++|++++++|+|||.+++.........       +.......+.. ......++.++
T Consensus        99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~  170 (219)
T 3jwg_A           99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFH-------YGNLFEGNLRH-RDHRFEWTRKE  170 (219)
T ss_dssp             GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGC-------CCCT-----GG-GCCTTSBCHHH
T ss_pred             ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhh-------hcccCcccccc-cCceeeecHHH
Confidence            32  3999999999999988889999999999999996665443211100       00000000000 11233468889


Q ss_pred             HH----HHHHHcCCcceeE
Q 018405          328 YS----ELAIKAGFKGVNY  342 (356)
Q Consensus       328 ~~----~ll~~aGf~~~~~  342 (356)
                      +.    ++++++||++...
T Consensus       171 l~~~~~~l~~~~Gf~v~~~  189 (219)
T 3jwg_A          171 FQTWAVKVAEKYGYSVRFL  189 (219)
T ss_dssp             HHHHHHHHHHHHTEEEEEE
T ss_pred             HHHHHHHHHHHCCcEEEEE
Confidence            88    8899999976543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.67  E-value=3.2e-16  Score=136.70  Aligned_cols=159  Identities=18%  Similarity=0.119  Sum_probs=109.5

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCCC--cEE
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPEA--DTI  255 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~i  255 (356)
                      .+...++ ..+..+|||||||+|.++..+++... .+++++|. +.+++.+++.   .+++++.+|+.+ +.+..  |+|
T Consensus        34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  111 (243)
T 3bkw_A           34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA  111 (243)
T ss_dssp             HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred             HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence            3444454 55678999999999999999998732 38999996 7887777654   468999999987 55543  999


Q ss_pred             EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC--CCCCCchhh--------hhhhhh-----hhhhhhhcCCC
Q 018405          256 LMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP--EVPENSATS--------REISIL-----DTICLFQVPHG  320 (356)
Q Consensus       256 ~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~--~~~~~~~~~--------~~~~~~-----~~~~~~~~~~~  320 (356)
                      ++..++||+++  ...+|++++++|+|||++++......  .........        .....+     ....+......
T Consensus       112 ~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (243)
T 3bkw_A          112 YSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK  189 (243)
T ss_dssp             EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCE
T ss_pred             EEeccccccch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEE
Confidence            99999999965  78999999999999999999764211  000000000        000000     00000000122


Q ss_pred             ccCCHHHHHHHHHHcCCcceeEEEc
Q 018405          321 RERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       321 ~~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                      ..+|.++|.++|+++||+++++...
T Consensus       190 ~~~t~~~~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          190 HHRTVGTTLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             EeccHHHHHHHHHHcCCEeeeeccC
Confidence            3368999999999999999988754

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.67  E-value=5.8e-16  Score=138.15  Aligned_cols=156  Identities=15%  Similarity=0.122  Sum_probs=113.0

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC-cEEEec
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA-DTILMK  258 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-D~i~~~  258 (356)
                      .+++.+. ..+..+|||||||+|.++..+++  ++.+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++.
T Consensus        48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  124 (279)
T 3ccf_A           48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN  124 (279)
T ss_dssp             HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred             HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence            4455555 66778999999999999999998  7889999996 8888877654 689999999988 55544 999999


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhh---hhhhcCCCccCCHHHHHHHHHHc
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTI---CLFQVPHGRERTKQEYSELAIKA  335 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~t~~e~~~ll~~a  335 (356)
                      .++|++++  ...+|++++++|+|||++++..+.....  ..............   ..........++.++|.++|+++
T Consensus       125 ~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  200 (279)
T 3ccf_A          125 AMLHWVKE--PEAAIASIHQALKSGGRFVAEFGGKGNI--KYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQ  200 (279)
T ss_dssp             SCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECTTTT--HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHH
T ss_pred             chhhhCcC--HHHHHHHHHHhcCCCcEEEEEecCCcch--HHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHc
Confidence            99999975  6899999999999999999976543221  00000000000000   00000012356899999999999


Q ss_pred             CCcceeEEEc
Q 018405          336 GFKGVNYEYG  345 (356)
Q Consensus       336 Gf~~~~~~~~  345 (356)
                      ||+++.+...
T Consensus       201 Gf~~~~~~~~  210 (279)
T 3ccf_A          201 GFDVTYAALF  210 (279)
T ss_dssp             TEEEEEEEEE
T ss_pred             CCEEEEEEEe
Confidence            9999876544

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.66  E-value=1.8e-15  Score=140.48  Aligned_cols=214  Identities=11%  Similarity=0.008  Sum_probs=137.6

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch-HhhhCCCCCC
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK-YFVRNNQNGA  115 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~-~l~~~~~~~~  115 (356)
                      ++|..| .    +|.|+.|||+.+|++      ++ .+++||+.|++.|+++.   .+ + |++|+.+. ++....  ..
T Consensus        47 ~ll~~L-~----~~~t~~eLa~~~g~~------~~-~v~~~L~~l~~~gll~~---~~-~-~~lt~~~~~~l~~~~--~~  107 (373)
T 2qm3_A           47 NVLSAV-L----ASDDIWRIVDLSEEP------LP-LVVAILESLNELGYVTF---ED-G-VKLTEKGEELVAEYG--IG  107 (373)
T ss_dssp             HHHHHH-H----HCSCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEC---SS-S-SEECHHHHHHHHHHT--CC
T ss_pred             HHHHHh-c----CCCCHHHHHHHhCCC------hH-HHHHHHHHHhhCCcEEE---CC-C-EEECHHHHHHHHhcC--cc
Confidence            779988 5    489999999999997      78 99999999999999994   32 5 99999877 555432  11


Q ss_pred             ChHHHHH-H-hc----CcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhc
Q 018405          116 SLRPYMA-L-RL----DKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYK  189 (356)
Q Consensus       116 ~~~~~~~-~-~~----~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (356)
                      +..+.+. . ..    ...+...|..+.+.++....+.      ..++.....++  ......        . ... ...
T Consensus       108 ~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~--------l-~~~-~~~  169 (373)
T 2qm3_A          108 KRYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL------HEFDQAYVTPE--TTVARV--------I-LMH-TRG  169 (373)
T ss_dssp             CCCC------------CGGGHHHHHHHHHHHTTCCCCC------GGGTCCCBCHH--HHHHHH--------H-HHH-HTT
T ss_pred             ccccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc------hhcCCeecCHH--HHHHHH--------H-HHh-hcC
Confidence            1111110 0 00    0111223344445544321110      01110000111  110000        0 001 111


Q ss_pred             CCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCC----C-cEEEe
Q 018405          190 GFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPE----A-DTILM  257 (356)
Q Consensus       190 ~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~----~-D~i~~  257 (356)
                       ..+..+|||+| |+|.++..++...|..+++++|+ +.+++.++++      .+++++.+|+.++.|.    . |+|++
T Consensus       170 -~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~  247 (373)
T 2qm3_A          170 -DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFIT  247 (373)
T ss_dssp             -CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred             -CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEE
Confidence             23568999999 99999999999888889999997 8888877653      3799999999884432    3 99999


Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      ...++..   ....+|++++++|+|||++++++..
T Consensus       248 ~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~  279 (373)
T 2qm3_A          248 DPPETLE---AIRAFVGRGIATLKGPRCAGYFGIT  279 (373)
T ss_dssp             CCCSSHH---HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred             CCCCchH---HHHHHHHHHHHHcccCCeEEEEEEe
Confidence            8776643   2589999999999999976665543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.66  E-value=8.5e-16  Score=136.64  Aligned_cols=160  Identities=8%  Similarity=0.042  Sum_probs=112.3

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hH------HHHhCCCC-------CCceEEEcc-C
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PY------VIKNAPSY-------LGIEHVGGD-F  245 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~~-------~~v~~~~~D-~  245 (356)
                      ..+++.++ +.+..+|||||||+|.++..+++.+ |+.+++++|. +.      +++.++++       ++++++.+| +
T Consensus        33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  111 (275)
T 3bkx_A           33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL  111 (275)
T ss_dssp             HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred             HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence            45666666 7788999999999999999999986 7789999997 43      55555432       479999998 4


Q ss_pred             CC---CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhh-hhhhhhhhhc--
Q 018405          246 FE---SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREIS-ILDTICLFQV--  317 (356)
Q Consensus       246 ~~---~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~--  317 (356)
                      ..   +++.+  |+|++..++||+++.  ..+++.++++++|||++++.+...+...... ...... .....+....  
T Consensus       112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  188 (275)
T 3bkx_A          112 SDDLGPIADQHFDRVVLAHSLWYFASA--NALALLFKNMAAVCDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYAIAPS  188 (275)
T ss_dssp             TTCCGGGTTCCCSEEEEESCGGGSSCH--HHHHHHHHHHTTTCSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHHHSCC
T ss_pred             hhccCCCCCCCEEEEEEccchhhCCCH--HHHHHHHHHHhCCCCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhhcccc
Confidence            33   33433  999999999999874  4588888888888999999998775432111 000000 0000000000  


Q ss_pred             --C-CCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405          318 --P-HGRERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       318 --~-~~~~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                        . ....++.++|.++++++||++++....
T Consensus       189 ~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          189 DVANIRTLITPDTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             TTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred             ccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence              0 123579999999999999999887655

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.66  E-value=2.6e-16  Score=140.89  Aligned_cols=156  Identities=19%  Similarity=0.166  Sum_probs=111.7

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-C-CCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-S-VPE  251 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~-~~~  251 (356)
                      ..++..++  .++.+|||||||+|.++..+++.  +.+++++|. +.+++.+++.       ++++++.+|+.+ + ++.
T Consensus        59 ~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  134 (285)
T 4htf_A           59 DRVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE  134 (285)
T ss_dssp             HHHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred             HHHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence            44555554  23679999999999999999987  678999996 8888777643       578999999987 4 343


Q ss_pred             C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhh-------hcCCCcc
Q 018405          252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLF-------QVPHGRE  322 (356)
Q Consensus       252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  322 (356)
                      .  |+|++..++||+++  ...+|++++++|+|||++++.++......   ........+......       .......
T Consensus       135 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (285)
T 4htf_A          135 TPVDLILFHAVLEWVAD--PRSVLQTLWSVLRPGGVLSLMFYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLSPDYP  209 (285)
T ss_dssp             SCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEEBHHHHH---HHHHHTTCHHHHHTTCCCC----CCCSCC
T ss_pred             CCceEEEECchhhcccC--HHHHHHHHHHHcCCCeEEEEEEeCCchHH---HHHHHhcCHHHHhhhccccccccCCCCCC
Confidence            3  99999999999976  68999999999999999999876432210   000000000000000       0012345


Q ss_pred             CCHHHHHHHHHHcCCcceeEEEcc
Q 018405          323 RTKQEYSELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       323 ~t~~e~~~ll~~aGf~~~~~~~~~  346 (356)
                      ++.++|.++++++||+++++....
T Consensus       210 ~~~~~l~~~l~~aGf~v~~~~~~~  233 (285)
T 4htf_A          210 RDPTQVYLWLEEAGWQIMGKTGVR  233 (285)
T ss_dssp             BCHHHHHHHHHHTTCEEEEEEEES
T ss_pred             CCHHHHHHHHHHCCCceeeeeeEE
Confidence            689999999999999999887654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.66  E-value=2.1e-16  Score=139.26  Aligned_cols=152  Identities=15%  Similarity=0.101  Sum_probs=111.4

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--cEEE
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA--DTIL  256 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~  256 (356)
                      ..+++.+. ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+ + +..  |+|+
T Consensus        23 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~  100 (259)
T 2p35_A           23 RDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLY  100 (259)
T ss_dssp             HHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEE
T ss_pred             HHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEE
Confidence            45666665 66778999999999999999999999999999996 8888877653 689999999988 5 443  9999


Q ss_pred             ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh--hhhhh----cCCCccCCHHHHHH
Q 018405          257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT--ICLFQ----VPHGRERTKQEYSE  330 (356)
Q Consensus       257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~t~~e~~~  330 (356)
                      +..++||+++  ...+|++++++|+|||++++..+.....   ............  +....    ......++.++|.+
T Consensus       101 ~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (259)
T 2p35_A          101 ANAVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFN  175 (259)
T ss_dssp             EESCGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHH
T ss_pred             EeCchhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHH
Confidence            9999999965  7899999999999999999987533211   000000000000  00000    00234578999999


Q ss_pred             HHHHcCCcce
Q 018405          331 LAIKAGFKGV  340 (356)
Q Consensus       331 ll~~aGf~~~  340 (356)
                      +|+++||++.
T Consensus       176 ~l~~aGf~v~  185 (259)
T 2p35_A          176 ALSPKSSRVD  185 (259)
T ss_dssp             HHGGGEEEEE
T ss_pred             HHHhcCCceE
Confidence            9999999743

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.65  E-value=2.7e-16  Score=138.15  Aligned_cols=160  Identities=14%  Similarity=0.077  Sum_probs=110.3

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCCC--cE
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPEA--DT  254 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~  254 (356)
                      ..+.+.++ ..+..+|||||||+|.++..+++..+. +++++|. +.+++.+++.   .+++++.+|+.+ +.+..  |+
T Consensus        34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~  111 (253)
T 3g5l_A           34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV  111 (253)
T ss_dssp             HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred             HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence            34444444 446789999999999999999998654 8999996 8787777543   689999999987 66543  99


Q ss_pred             EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC--C---------CCCchhhhhhhhhh-----hhhhhhcC
Q 018405          255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE--V---------PENSATSREISILD-----TICLFQVP  318 (356)
Q Consensus       255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~--~---------~~~~~~~~~~~~~~-----~~~~~~~~  318 (356)
                      |++..++||+++  ...+|++++++|+|||++++.......  .         ............+.     ..+.....
T Consensus       112 v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (253)
T 3g5l_A          112 VLSSLALHYIAS--FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDV  189 (253)
T ss_dssp             EEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEE
T ss_pred             EEEchhhhhhhh--HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccC
Confidence            999999999955  799999999999999999996432110  0         00000000000000     00000000


Q ss_pred             CCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405          319 HGRERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       319 ~~~~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                      ....+|.++|.++|+++||+++++...
T Consensus       190 ~~~~~t~~~~~~~l~~aGF~~~~~~e~  216 (253)
T 3g5l_A          190 QKYHRTVTTYIQTLLKNGFQINSVIEP  216 (253)
T ss_dssp             EEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred             ccEecCHHHHHHHHHHcCCeeeeeecC
Confidence            112349999999999999999988754

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.65  E-value=1.2e-15  Score=132.24  Aligned_cols=149  Identities=18%  Similarity=0.133  Sum_probs=108.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----------CCceEEEccCCC-CCCCC--cEEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----------LGIEHVGGDFFE-SVPEA--DTIL  256 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~~~~--D~i~  256 (356)
                      ++..+|||||||+|.++..+++.  +.+++++|. +.+++.+++.           .+++++.+|+.. +++..  |+|+
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~  106 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV  106 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence            46789999999999999999997  668999996 7777766542           257899999988 65543  9999


Q ss_pred             ecccccCCChH-HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc--------------CCCc
Q 018405          257 MKWVLSSFDDE-QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV--------------PHGR  321 (356)
Q Consensus       257 ~~~vlh~~~~~-~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~  321 (356)
                      +..++||+++. ....+|++++++|+|||++++.+.......  . .........+......              ....
T Consensus       107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (235)
T 3sm3_A          107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL--K-LYRKRYLHDFPITKEEGSFLARDPETGETEFIAH  183 (235)
T ss_dssp             EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS--H-HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred             EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH--H-HHHHHhhhhccchhhhcceEecccccCCcceeeE
Confidence            99999999753 456999999999999999999987654321  0 0000000011000000              0013


Q ss_pred             cCCHHHHHHHHHHcCCcceeEEEc
Q 018405          322 ERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       322 ~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                      .++.++|.++++++||+++++...
T Consensus       184 ~~~~~~l~~ll~~aGf~~~~~~~~  207 (235)
T 3sm3_A          184 HFTEKELVFLLTDCRFEIDYFRVK  207 (235)
T ss_dssp             CBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred             eCCHHHHHHHHHHcCCEEEEEEec
Confidence            579999999999999999987643

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.65  E-value=2.6e-15  Score=129.01  Aligned_cols=138  Identities=22%  Similarity=0.203  Sum_probs=103.1

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChHH
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQ  268 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~  268 (356)
                      +..+|||||||+|.++..+++.      +++|. +.+++.+++. +++++.+|+.+ +.+..  |+|++.+++||+++  
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--  117 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD--  117 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC--
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccC--
Confidence            3789999999999999988764      88886 8888877765 79999999887 65543  99999999999965  


Q ss_pred             HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405          269 SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       269 ~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                      ...+|++++++|+|||++++.++....     ............ .........++.++|.++++++||+++++...
T Consensus       118 ~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~  188 (219)
T 1vlm_A          118 PERALKEAYRILKKGGYLIVGIVDRES-----FLGREYEKNKEK-SVFYKNARFFSTEELMDLMRKAGFEEFKVVQT  188 (219)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEECSSS-----HHHHHHHHTTTC--CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEeCCcc-----HHHHHHHHHhcC-cchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence            689999999999999999998764322     111100000000 00011244579999999999999999987664

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.65  E-value=1.5e-15  Score=127.57  Aligned_cols=132  Identities=21%  Similarity=0.238  Sum_probs=107.8

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--cEEEe
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA--DTILM  257 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~  257 (356)
                      .++..+  +++..+|||||||+|.++..+++.  +.+++++|. +.+++.+++. ++++++.+|+.+ +.+..  |+|++
T Consensus        38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~  113 (195)
T 3cgg_A           38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS  113 (195)
T ss_dssp             HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred             HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence            455555  357789999999999999999986  568999996 7777777654 679999999988 55543  99999


Q ss_pred             c-ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018405          258 K-WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAG  336 (356)
Q Consensus       258 ~-~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG  336 (356)
                      . .++|++++++...+|+++++.|+|||++++....                           ...++.+++.++++++|
T Consensus       114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~---------------------------~~~~~~~~~~~~l~~~G  166 (195)
T 3cgg_A          114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA---------------------------GRGWVFGDFLEVAERVG  166 (195)
T ss_dssp             CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET---------------------------TSSCCHHHHHHHHHHHT
T ss_pred             CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC---------------------------CCCcCHHHHHHHHHHcC
Confidence            8 8999998888899999999999999999985421                           11257899999999999


Q ss_pred             CcceeEEEc
Q 018405          337 FKGVNYEYG  345 (356)
Q Consensus       337 f~~~~~~~~  345 (356)
                      |++++....
T Consensus       167 f~~~~~~~~  175 (195)
T 3cgg_A          167 LELENAFES  175 (195)
T ss_dssp             EEEEEEESS
T ss_pred             CEEeeeecc
Confidence            999887554

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.64  E-value=9e-16  Score=135.41  Aligned_cols=146  Identities=16%  Similarity=0.154  Sum_probs=103.8

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC--cEEEecccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA--DTILMKWVL  261 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~--D~i~~~~vl  261 (356)
                      +.+..+|||||||+|.++..+++.  +.+++++|. +.+++.++++     ++++++.+|+.+ +++++  |+|++..++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  114 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW  114 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence            567789999999999999999986  568999996 7777766432     689999999987 65543  999999999


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC---CCccCCHHHHHHHHHHcCCc
Q 018405          262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP---HGRERTKQEYSELAIKAGFK  338 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~t~~e~~~ll~~aGf~  338 (356)
                      |++++  ...+|++++++|+|||++++. ...++  ....................+   ....++.+++.++++++||+
T Consensus       115 ~~~~~--~~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  189 (263)
T 2yqz_A          115 HLVPD--WPKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK  189 (263)
T ss_dssp             GGCTT--HHHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred             hhcCC--HHHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence            99975  789999999999999999987 21111  011000000111111100000   11245789999999999999


Q ss_pred             ceeEE
Q 018405          339 GVNYE  343 (356)
Q Consensus       339 ~~~~~  343 (356)
                      ++.+.
T Consensus       190 ~~~~~  194 (263)
T 2yqz_A          190 PRTRE  194 (263)
T ss_dssp             CEEEE
T ss_pred             cceEE
Confidence            87653

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.64  E-value=9.7e-16  Score=133.69  Aligned_cols=162  Identities=11%  Similarity=0.046  Sum_probs=110.9

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEEEecc-cccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTILMKW-VLSS  263 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~-vlh~  263 (356)
                      +..+|||||||+|.++..+++.  +.+++++|. +.+++.+++.     .+++++.+|+.+ +.+.. |+|++.. ++||
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence            6689999999999999999987  468999996 8888777643     279999999987 55544 9999998 9999


Q ss_pred             CC-hHHHHHHHHHHHHhCCCCCEEEEEecccCCC----CCCchh---hhhh-----------hhhhhhhhhhc-------
Q 018405          264 FD-DEQSLKLLKNCYKALPDGGKLLNVNVTIPEV----PENSAT---SREI-----------SILDTICLFQV-------  317 (356)
Q Consensus       264 ~~-~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~----~~~~~~---~~~~-----------~~~~~~~~~~~-------  317 (356)
                      ++ .++..++|++++++|+|||++++........    ......   ....           ....+.++...       
T Consensus       115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (246)
T 1y8c_A          115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF  194 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEE
T ss_pred             cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccccc
Confidence            94 3678999999999999999999843211000    000000   0000           00000000000       


Q ss_pred             ---CCCccCCHHHHHHHHHHcCCcceeEEEc--------cCceeEEEEeC
Q 018405          318 ---PHGRERTKQEYSELAIKAGFKGVNYEYG--------ACNLYVMEFLK  356 (356)
Q Consensus       318 ---~~~~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~vi~~~~  356 (356)
                         .....++.++|.++|+++||+++++...        .....++.++|
T Consensus       195 ~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK  244 (246)
T 1y8c_A          195 DEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL  244 (246)
T ss_dssp             EEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred             EEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence               0123469999999999999999998754        13445666664

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.64  E-value=1.6e-15  Score=132.12  Aligned_cols=95  Identities=24%  Similarity=0.343  Sum_probs=80.1

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEEEecc-ccc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTILMKW-VLS  262 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~-vlh  262 (356)
                      .+..+|||||||+|.++..+++.   .+++++|. +.+++.+++.     .+++++.+|+.+ +.+.. |+|++.. ++|
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN  108 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence            35689999999999999999886   68999996 8888777543     579999999987 55544 9999986 999


Q ss_pred             CC-ChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          263 SF-DDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       263 ~~-~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      |+ +.++...+|++++++|+|||++++.
T Consensus       109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A          109 YLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             GCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            98 5567889999999999999999873

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.64  E-value=1.8e-15  Score=127.61  Aligned_cols=142  Identities=20%  Similarity=0.140  Sum_probs=109.8

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC-c
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA-D  253 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~-D  253 (356)
                      .+++.++ ..+..+|||||||+|..+..+++.  +.+++++|. +.+++.+++.      ++++++.+|+.+ +.+.. |
T Consensus        23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D   99 (199)
T 2xvm_A           23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD   99 (199)
T ss_dssp             HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred             HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence            3444454 456789999999999999999986  568999996 8777776542      479999999987 55444 9


Q ss_pred             EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018405          254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAI  333 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~  333 (356)
                      +|++..++||+++++...+|++++++|+|||++++++.........          .      ......++.+++.++++
T Consensus       100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~----------~------~~~~~~~~~~~l~~~~~  163 (199)
T 2xvm_A          100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC----------T------VGFPFAFKEGELRRYYE  163 (199)
T ss_dssp             EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC----------C------SCCSCCBCTTHHHHHTT
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC----------C------CCCCCccCHHHHHHHhc
Confidence            9999999999987789999999999999999999988766443110          0      01223468899999998


Q ss_pred             HcCCcceeEEEc
Q 018405          334 KAGFKGVNYEYG  345 (356)
Q Consensus       334 ~aGf~~~~~~~~  345 (356)
                      +  |++++....
T Consensus       164 ~--f~~~~~~~~  173 (199)
T 2xvm_A          164 G--WERVKYNED  173 (199)
T ss_dssp             T--SEEEEEECC
T ss_pred             C--CeEEEeccc
Confidence            6  988876543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.64  E-value=6.7e-16  Score=132.99  Aligned_cols=154  Identities=16%  Similarity=0.097  Sum_probs=110.3

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC-----CCC--Cc
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES-----VPE--AD  253 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~-----~~~--~D  253 (356)
                      ..+++.+. ..++.+|||||||+|.++..+++.  +.+++++|. +.+++.+++..++.+..+|+.+.     .+.  .|
T Consensus        42 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           42 QAILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             HHHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             HHHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence            34555555 445699999999999999999987  668999996 88888888778888998887541     222  29


Q ss_pred             EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc-----CCCccCCHHHH
Q 018405          254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV-----PHGRERTKQEY  328 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~t~~e~  328 (356)
                      +|++.+++| ++  +...+|++++++|+|||++++.++...........   ..+.........     .....++.++|
T Consensus       119 ~v~~~~~l~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (227)
T 3e8s_A          119 LICANFALL-HQ--DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASW  192 (227)
T ss_dssp             EEEEESCCC-SS--CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHH
T ss_pred             EEEECchhh-hh--hHHHHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHH
Confidence            999999999 54  46899999999999999999988755432211000   000000000000     01234699999


Q ss_pred             HHHHHHcCCcceeEEE
Q 018405          329 SELAIKAGFKGVNYEY  344 (356)
Q Consensus       329 ~~ll~~aGf~~~~~~~  344 (356)
                      .++|+++||+++++..
T Consensus       193 ~~~l~~aGf~~~~~~~  208 (227)
T 3e8s_A          193 LNALDMAGLRLVSLQE  208 (227)
T ss_dssp             HHHHHHTTEEEEEEEC
T ss_pred             HHHHHHcCCeEEEEec
Confidence            9999999999998765

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.62  E-value=3e-15  Score=128.17  Aligned_cols=131  Identities=17%  Similarity=0.206  Sum_probs=102.4

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecc
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKW  259 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~  259 (356)
                      .+++.+....+..+|||||||+|.++..+.     .+++++|....        +++++.+|+.+ +.+..  |+|++..
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~  123 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFCL  123 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEES
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEeh
Confidence            455555434567899999999999988773     57888986322        68899999988 66543  9999999


Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcc
Q 018405          260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKG  339 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~  339 (356)
                      ++|+   ++...+|++++++|+|||++++.+....                           ..+.++|.++++++||++
T Consensus       124 ~l~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf~~  173 (215)
T 2zfu_A          124 SLMG---TNIRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGFKI  173 (215)
T ss_dssp             CCCS---SCHHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTEEE
T ss_pred             hccc---cCHHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCCEE
Confidence            9984   3478999999999999999999874320                           127899999999999999


Q ss_pred             eeEEEccCceeEEEEeC
Q 018405          340 VNYEYGACNLYVMEFLK  356 (356)
Q Consensus       340 ~~~~~~~~~~~vi~~~~  356 (356)
                      +........+.+++++|
T Consensus       174 ~~~~~~~~~~~~~~~~k  190 (215)
T 2zfu_A          174 VSKDLTNSHFFLFDFQK  190 (215)
T ss_dssp             EEEECCSTTCEEEEEEE
T ss_pred             EEEecCCCeEEEEEEEe
Confidence            88766666667777654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.62  E-value=3.3e-16  Score=140.69  Aligned_cols=145  Identities=17%  Similarity=0.241  Sum_probs=104.2

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------------------------------------
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------------------------------------  235 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------------------------  235 (356)
                      +..+|||||||+|.++..+++.++..+++++|+ +.+++.|+++                                    
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            568999999999999999999999999999997 7777766542                                    


Q ss_pred             ----------------------------CCceEEEccCCCCC------CC-C-cEEEecccccCC----ChHHHHHHHHH
Q 018405          236 ----------------------------LGIEHVGGDFFESV------PE-A-DTILMKWVLSSF----DDEQSLKLLKN  275 (356)
Q Consensus       236 ----------------------------~~v~~~~~D~~~~~------~~-~-D~i~~~~vlh~~----~~~~~~~~L~~  275 (356)
                                                  .+|+++.+|+....      +. . |+|++..+++++    ++++..++|++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                        37999999998632      33 3 999999999765    66788999999


Q ss_pred             HHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHH--cCCcceeEEEc
Q 018405          276 CYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIK--AGFKGVNYEYG  345 (356)
Q Consensus       276 ~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~  345 (356)
                      ++++|+|||+|++.........      ..........- .. ......++++.++|.+  +||+.++++..
T Consensus       206 ~~~~LkpGG~lil~~~~~~~y~------~~~~~~~~~~~-~~-~~~~~~p~~~~~~L~~~~~GF~~~~~~~~  269 (292)
T 3g07_A          206 IYRHLRPGGILVLEPQPWSSYG------KRKTLTETIYK-NY-YRIQLKPEQFSSYLTSPDVGFSSYELVAT  269 (292)
T ss_dssp             HHHHEEEEEEEEEECCCHHHHH------TTTTSCHHHHH-HH-HHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred             HHHHhCCCcEEEEecCCchhhh------hhhcccHHHHh-hh-hcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence            9999999999998533221100      00000000000 00 1122357899999999  99988887654

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.62  E-value=1.6e-15  Score=133.24  Aligned_cols=97  Identities=14%  Similarity=0.111  Sum_probs=85.2

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChHH
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQ  268 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~  268 (356)
                      ...+|||||||+|.++..|++.+  .+++++|. +.+++.+++.++++++.+|+.+ +++++  |+|++..++|+++   
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~---  113 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFD---  113 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCC---
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhh---
Confidence            45799999999999999999875  47899996 8999999988999999999988 77765  9999999998875   


Q ss_pred             HHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          269 SLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       269 ~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                      ..+++++++++|||||+|+++....+
T Consensus       114 ~~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A          114 LDRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            36799999999999999999876443

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.61  E-value=1e-15  Score=133.73  Aligned_cols=147  Identities=13%  Similarity=0.068  Sum_probs=107.0

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCC-------CcEEEec
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPE-------ADTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~-------~D~i~~~  258 (356)
                      +.+..+|||||||+|.++..+++..+  +++++|. +.+++.++++   .+++++.+|+.+ +.+.       .|+|++.
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~  131 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR  131 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence            45778999999999999999999888  7888896 7777776543   479999999988 3221       4999999


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh-----hhhh-hhhhcCCCccCCHHHHHHHH
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI-----LDTI-CLFQVPHGRERTKQEYSELA  332 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~t~~e~~~ll  332 (356)
                      .++|++++++..++|++++++|+|||++++.+...+...   ........     ..+. .+........++.+++.++|
T Consensus       132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (245)
T 3ggd_A          132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCID---FFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF  208 (245)
T ss_dssp             SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH---HHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred             chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccH---HHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence            999999987899999999999999999999998654310   00000000     0000 00000011236899999999


Q ss_pred             HHcCCcceeEEE
Q 018405          333 IKAGFKGVNYEY  344 (356)
Q Consensus       333 ~~aGf~~~~~~~  344 (356)
                        +||+++....
T Consensus       209 --aGf~~~~~~~  218 (245)
T 3ggd_A          209 --PDFEILSQGE  218 (245)
T ss_dssp             --TTEEEEEEEC
T ss_pred             --CCCEEEeccc
Confidence              9999987544

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.59  E-value=8.9e-16  Score=130.72  Aligned_cols=151  Identities=11%  Similarity=0.018  Sum_probs=106.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC--cEEEecccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA--DTILMKWVL  261 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~--D~i~~~~vl  261 (356)
                      ..+..+|||||||+|..+..++.. ++.+++++|. +.+++.+++.     .+++++.+|+.+ +.+..  |+|++..++
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence            446789999999999985544443 5679999996 8887776543     579999999988 66543  999999999


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405          262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVN  341 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~  341 (356)
                      ||++.++..++|++++++|+|||++++.+...++.............+.............++.+++.++++++||...+
T Consensus       100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~  179 (209)
T 2p8j_A          100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE  179 (209)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred             HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence            99987889999999999999999999988765442110000000000000000000012456899999999999997665


Q ss_pred             E
Q 018405          342 Y  342 (356)
Q Consensus       342 ~  342 (356)
                      .
T Consensus       180 ~  180 (209)
T 2p8j_A          180 D  180 (209)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.59  E-value=3.4e-15  Score=134.10  Aligned_cols=142  Identities=18%  Similarity=0.102  Sum_probs=95.3

Q ss_pred             CCCceEEEEcCCccHHHH----HHHHhCCCCeE--EEccc-hHHHHhCCCC-------CCceEE--EccCCC-C------
Q 018405          192 EHVKKLVDVGGGLGATLN----MIISKYPRIKG--INYDL-PYVIKNAPSY-------LGIEHV--GGDFFE-S------  248 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~~-------~~v~~~--~~D~~~-~------  248 (356)
                      .+..+|||||||+|.++.    .++.++|+.++  +++|. +.+++.++++       +++.+.  .++..+ +      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            356799999999997654    44556688854  99996 8887766432       344443  444432 2      


Q ss_pred             CCC-C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc-CCCccCCH
Q 018405          249 VPE-A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV-PHGRERTK  325 (356)
Q Consensus       249 ~~~-~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~  325 (356)
                      +++ . |+|++.+++||++|  ..++|++++++|||||++++.+...+.    . ....  .......... .....++.
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~----~-~~~~--~~~~~~~~~~~~~~~~~~~  201 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSS----G-WDKL--WKKYGSRFPQDDLCQYITS  201 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTS----H-HHHH--HHHHGGGSCCCTTCCCCCH
T ss_pred             cCCCceeEEEEeeeeeecCC--HHHHHHHHHHHcCCCcEEEEEEecCCc----c-HHHH--HHHHHHhccCCCcccCCCH
Confidence            233 3 99999999999976  789999999999999999998653211    1 1110  1010000000 01245689


Q ss_pred             HHHHHHHHHcCCcceeE
Q 018405          326 QEYSELAIKAGFKGVNY  342 (356)
Q Consensus       326 ~e~~~ll~~aGf~~~~~  342 (356)
                      ++|.++|+++||+++..
T Consensus       202 ~~~~~~l~~aGf~~~~~  218 (292)
T 2aot_A          202 DDLTQMLDNLGLKYECY  218 (292)
T ss_dssp             HHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHCCCceEEE
Confidence            99999999999998763

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.58  E-value=1.8e-15  Score=130.46  Aligned_cols=151  Identities=19%  Similarity=0.185  Sum_probs=108.2

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC---CCCCC--cEEE
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE---SVPEA--DTIL  256 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~~--D~i~  256 (356)
                      .+++.++  .+..+|||||||+|..+..+++. + .+++++|. +.+++.++.. ..+++.+|+.+   +.++.  |+|+
T Consensus        24 ~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~v~   98 (230)
T 3cc8_A           24 NLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDCVI   98 (230)
T ss_dssp             HHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEEEE
T ss_pred             HHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCEEE
Confidence            4444443  46789999999999999999987 4 89999996 7888777654 24788899875   33333  9999


Q ss_pred             ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhh-hhhhh-----hhcCCCccCCHHHHHH
Q 018405          257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISIL-DTICL-----FQVPHGRERTKQEYSE  330 (356)
Q Consensus       257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~t~~e~~~  330 (356)
                      +..++||+++  ...+|+++++.|+|||++++..+.....      ....... ..+..     ........++.++|.+
T Consensus        99 ~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (230)
T 3cc8_A           99 FGDVLEHLFD--PWAVIEKVKPYIKQNGVILASIPNVSHI------SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLR  170 (230)
T ss_dssp             EESCGGGSSC--HHHHHHHTGGGEEEEEEEEEEEECTTSH------HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHH
T ss_pred             ECChhhhcCC--HHHHHHHHHHHcCCCCEEEEEeCCcchH------HHHHHHhcCCceeccCCCCCcceEEEecHHHHHH
Confidence            9999999976  5799999999999999999987543221      0000000 00000     0001124579999999


Q ss_pred             HHHHcCCcceeEEEcc
Q 018405          331 LAIKAGFKGVNYEYGA  346 (356)
Q Consensus       331 ll~~aGf~~~~~~~~~  346 (356)
                      +++++||+++++....
T Consensus       171 ~l~~~Gf~~~~~~~~~  186 (230)
T 3cc8_A          171 MFLKAGYSISKVDRVY  186 (230)
T ss_dssp             HHHHTTEEEEEEEEEE
T ss_pred             HHHHcCCeEEEEEecc
Confidence            9999999999887653

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.58  E-value=7.1e-15  Score=132.41  Aligned_cols=163  Identities=18%  Similarity=0.151  Sum_probs=110.1

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCC--------CCC
Q 018405          168 VFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPS--------YLG  237 (356)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~  237 (356)
                      .|.+....+.......+.. +. ..+..+|||||||+|..+..+++.+ +..+++++|. +.+++.+++        .++
T Consensus        13 ~y~~~rp~y~~~~~~~l~~-~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~   90 (299)
T 3g5t_A           13 RYSSSRPSYPSDFYKMIDE-YH-DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN   90 (299)
T ss_dssp             HHHHHSCCCCHHHHHHHHH-HC-CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTT
T ss_pred             HHhhcCCCCCHHHHHHHHH-Hh-cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCc
Confidence            3443333333334444443 32 3577899999999999999999987 8999999996 888877754        368


Q ss_pred             ceEEEccCCC-CCCC------C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh
Q 018405          238 IEHVGGDFFE-SVPE------A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI  308 (356)
Q Consensus       238 v~~~~~D~~~-~~~~------~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~  308 (356)
                      ++++.+|+.+ +.+.      +  |+|++..++||+ +  ...+|++++++|+|||.+++.+...+......   .....
T Consensus        91 v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---~~~~~  164 (299)
T 3g5t_A           91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYADPIFPDYP---EFDDL  164 (299)
T ss_dssp             EEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEEEEECTTCG---GGTTH
T ss_pred             eEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecCCccccCcH---HHHHH
Confidence            9999999988 5544      3  999999999999 3  78999999999999999999554332111111   01111


Q ss_pred             hhhhhhh---hcCCCccCCHHHHHHHHHHcCCc
Q 018405          309 LDTICLF---QVPHGRERTKQEYSELAIKAGFK  338 (356)
Q Consensus       309 ~~~~~~~---~~~~~~~~t~~e~~~ll~~aGf~  338 (356)
                      +.-....   ..+.......+.+.++++++||.
T Consensus       165 ~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gfp  197 (299)
T 3g5t_A          165 MIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLD  197 (299)
T ss_dssp             HHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCCC
T ss_pred             HHHhccCcccccchhhchhhHHHHHhhhccCCC
Confidence            1111100   00001114566789999999994

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.58  E-value=1.1e-14  Score=127.72  Aligned_cols=132  Identities=9%  Similarity=-0.053  Sum_probs=102.6

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-----------------------CCCceEEEccCCC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-----------------------YLGIEHVGGDFFE  247 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~v~~~~~D~~~  247 (356)
                      .+..+|||+|||+|..+..|++.  +.+++++|+ +.+++.|++                       ..+++++++|+++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            46789999999999999999986  568999996 888776632                       1578999999998


Q ss_pred             -CCC--CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccC
Q 018405          248 -SVP--EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRER  323 (356)
Q Consensus       248 -~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (356)
                       +.+  .. |+|++..++|++++++...++++++++|+|||+++++....+...           ..      . .....
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-----------~~------g-~~~~~  206 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-----------HA------G-PPFYV  206 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-----------CC------C-SSCCC
T ss_pred             CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-----------CC------C-CCCCC
Confidence             543  33 999999999999988888999999999999999987654432210           00      0 01125


Q ss_pred             CHHHHHHHHHHcCCcceeEEE
Q 018405          324 TKQEYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       324 t~~e~~~ll~~aGf~~~~~~~  344 (356)
                      +++++.++++. +|+++....
T Consensus       207 ~~~el~~~l~~-~f~v~~~~~  226 (252)
T 2gb4_A          207 PSAELKRLFGT-KCSMQCLEE  226 (252)
T ss_dssp             CHHHHHHHHTT-TEEEEEEEE
T ss_pred             CHHHHHHHhhC-CeEEEEEec
Confidence            89999999987 599877654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.54  E-value=1.3e-14  Score=136.84  Aligned_cols=153  Identities=15%  Similarity=0.131  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC------CCC
Q 018405          178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE------SVP  250 (356)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~------~~~  250 (356)
                      ......+++.+. ..+..+|||||||+|.++..+++.  +.+++++|. +.+++.+++. ++......+..      +++
T Consensus        93 ~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~  168 (416)
T 4e2x_A           93 AMLARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRT  168 (416)
T ss_dssp             HHHHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccC
Confidence            334556677666 667889999999999999999985  458999996 8888888765 34433322211      222


Q ss_pred             -CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405          251 -EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY  328 (356)
Q Consensus       251 -~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~  328 (356)
                       .. |+|++.+++||+++  ...+|++++++|+|||++++..+.....      .. ...++...   ......++.++|
T Consensus       169 ~~~fD~I~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~------~~-~~~~~~~~---~~~~~~~s~~~l  236 (416)
T 4e2x_A          169 EGPANVIYAANTLCHIPY--VQSVLEGVDALLAPDGVFVFEDPYLGDI------VA-KTSFDQIF---DEHFFLFSATSV  236 (416)
T ss_dssp             HCCEEEEEEESCGGGCTT--HHHHHHHHHHHEEEEEEEEEEEECHHHH------HH-HTCGGGCS---TTCCEECCHHHH
T ss_pred             CCCEEEEEECChHHhcCC--HHHHHHHHHHHcCCCeEEEEEeCChHHh------hh-hcchhhhh---hhhhhcCCHHHH
Confidence             23 99999999999965  8999999999999999999965543210      00 00111110   123456799999


Q ss_pred             HHHHHHcCCcceeEEEcc
Q 018405          329 SELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       329 ~~ll~~aGf~~~~~~~~~  346 (356)
                      .++++++||+++++...+
T Consensus       237 ~~ll~~aGf~~~~~~~~~  254 (416)
T 4e2x_A          237 QGMAQRCGFELVDVQRLP  254 (416)
T ss_dssp             HHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHcCCEEEEEEEcc
Confidence            999999999999887754

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.54  E-value=7.3e-15  Score=132.00  Aligned_cols=154  Identities=14%  Similarity=0.022  Sum_probs=107.6

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CC-CC-C-cEEEec
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SV-PE-A-DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~-~~-~-D~i~~~  258 (356)
                      +.+..+|||||||+|.++..+++. +..+++++|. +.+++.++++       .+++++.+|+.+ +. +. . |+|++.
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  140 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  140 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence            357789999999999999988776 5568999996 7777776543       358999999988 55 33 3 999999


Q ss_pred             ccccC--CChHHHHHHHHHHHHhCCCCCEEEEEecccCCC--------CCCch----------hhh-hhhhhhhhhhhhc
Q 018405          259 WVLSS--FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV--------PENSA----------TSR-EISILDTICLFQV  317 (356)
Q Consensus       259 ~vlh~--~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~--------~~~~~----------~~~-~~~~~~~~~~~~~  317 (356)
                      .++|+  .+.++...+|++++++|+|||++++..+.....        .....          ... ....+.+......
T Consensus       141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~  220 (298)
T 1ri5_A          141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV  220 (298)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred             chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence            99998  566778999999999999999999977542110        00000          000 0000000000000


Q ss_pred             --CCCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405          318 --PHGRERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       318 --~~~~~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                        .....++.++|.++++++||+++++...
T Consensus       221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~  250 (298)
T 1ri5_A          221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGF  250 (298)
T ss_dssp             SSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred             cCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence              0123468999999999999999988765

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.54  E-value=3e-15  Score=134.41  Aligned_cols=105  Identities=16%  Similarity=0.172  Sum_probs=85.7

Q ss_pred             HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCC-C---
Q 018405          184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFE-S---  248 (356)
Q Consensus       184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~-~---  248 (356)
                      +.+.++ ..+..+|||||||+|..+..+++.  +.+++++|. +.+++.++++          .++.+..+|+.+ +   
T Consensus        49 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  125 (293)
T 3thr_A           49 LLGLLR-QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV  125 (293)
T ss_dssp             HHHHHH-HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred             HHHHhc-ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence            333343 446789999999999999999997  448999996 7888777431          468899999887 5   


Q ss_pred             CCCC--cEEEec-ccccCCCh-----HHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          249 VPEA--DTILMK-WVLSSFDD-----EQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       249 ~~~~--D~i~~~-~vlh~~~~-----~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      ++..  |+|++. +++||+++     ++..++|++++++|+|||++++..+
T Consensus       126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            4543  999998 99999987     7789999999999999999998764

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.53  E-value=1.2e-13  Score=120.71  Aligned_cols=152  Identities=18%  Similarity=0.242  Sum_probs=105.8

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCc--cHHHHHHHH-hCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCC--
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGL--GATLNMIIS-KYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESV--  249 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~--G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~--  249 (356)
                      ...++.+..-.+..+|||||||+  +..+..+++ ..|+.+++++|. |.+++.++.+      .+++++.+|+.++.  
T Consensus        67 ~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~  146 (277)
T 3giw_A           67 NRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASI  146 (277)
T ss_dssp             HHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHH
T ss_pred             HHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhh
Confidence            34444443123568999999997  444455544 679999999996 9999988653      36899999998731  


Q ss_pred             ---C---C------CcEEEecccccCCChHH-HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhh
Q 018405          250 ---P---E------ADTILMKWVLSSFDDEQ-SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQ  316 (356)
Q Consensus       250 ---~---~------~D~i~~~~vlh~~~~~~-~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (356)
                         +   .      ...|+++.+|||+++++ ...+|++++++|+|||+|++.+...+..+  .   ........+....
T Consensus       147 l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p--~---~~~~~~~~~~~~g  221 (277)
T 3giw_A          147 LDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP--Q---EVGRVAREYAARN  221 (277)
T ss_dssp             HTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH--H---HHHHHHHHHHHTT
T ss_pred             hcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH--H---HHHHHHHHHHhcC
Confidence               1   1      13689999999999876 68999999999999999999887754321  0   1111122221111


Q ss_pred             cCCCccCCHHHHHHHHHHcCCccee
Q 018405          317 VPHGRERTKQEYSELAIKAGFKGVN  341 (356)
Q Consensus       317 ~~~~~~~t~~e~~~ll~~aGf~~~~  341 (356)
                      . ....||.+|+.++|.  ||+.++
T Consensus       222 ~-p~~~rs~~ei~~~f~--Glelve  243 (277)
T 3giw_A          222 M-PMRLRTHAEAEEFFE--GLELVE  243 (277)
T ss_dssp             C-CCCCCCHHHHHHTTT--TSEECT
T ss_pred             C-CCccCCHHHHHHHhC--CCcccC
Confidence            1 245689999999995  998654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.52  E-value=1.9e-14  Score=127.06  Aligned_cols=141  Identities=16%  Similarity=0.079  Sum_probs=103.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----C-----------------------------
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----L-----------------------------  236 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-----------------------------  236 (356)
                      ..+..+|||||||+|.++..++...+ .+++++|. +.+++.+++.    +                             
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             ccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            34668999999999999998888665 57999996 7777766432    1                             


Q ss_pred             --Cc-eEEEccCCC-CC-CC----C-cEEEecccccCCCh--HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhh
Q 018405          237 --GI-EHVGGDFFE-SV-PE----A-DTILMKWVLSSFDD--EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSR  304 (356)
Q Consensus       237 --~v-~~~~~D~~~-~~-~~----~-D~i~~~~vlh~~~~--~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~  304 (356)
                        ++ .++.+|+.+ +. +.    . |+|++..++|+++.  ++...+|++++++|+|||++++.+......        
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~--------  204 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY--------  204 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------
T ss_pred             hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce--------
Confidence              17 899999987 22 33    3 99999999994432  468899999999999999999988543210        


Q ss_pred             hhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEcc
Q 018405          305 EISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~  346 (356)
                       ....+..    . .....+.++|.++|+++||+++++....
T Consensus       205 -~~~~~~~----~-~~~~~~~~~~~~~l~~aGf~~~~~~~~~  240 (265)
T 2i62_A          205 -YMIGEQK----F-SSLPLGWETVRDAVEEAGYTIEQFEVIS  240 (265)
T ss_dssp             -EEETTEE----E-ECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             -EEcCCcc----c-cccccCHHHHHHHHHHCCCEEEEEEEec
Confidence             0000000    0 1234589999999999999999877643

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.52  E-value=6.2e-15  Score=126.23  Aligned_cols=100  Identities=22%  Similarity=0.243  Sum_probs=83.3

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCceEEEccCCCCCCC-C-cEEEecccccC
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIEHVGGDFFESVPE-A-DTILMKWVLSS  263 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~~~~-~-D~i~~~~vlh~  263 (356)
                      ..+..+|||||||+|.++..+++..  .+++++|. +.+++.+++    .++++++.+|+.+..+. . |+|++..++||
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  126 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY  126 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence            5577899999999999999999875  47899996 777776654    25799999999883343 3 99999999999


Q ss_pred             CCh-HHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          264 FDD-EQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       264 ~~~-~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      +++ +...++|++++++|+|||++++..+.
T Consensus       127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A          127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            986 45679999999999999999996653

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.52  E-value=1e-14  Score=128.91  Aligned_cols=139  Identities=14%  Similarity=0.059  Sum_probs=98.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC---------------------------------
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY---------------------------------  235 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~---------------------------------  235 (356)
                      ..+..+|||||||+|.++..++..  +. +++++|. +.+++.+++.                                 
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  130 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence            346689999999999887655543  33 6999996 8887765431                                 


Q ss_pred             --CCce-EEEccCCCC--CC---C-C-cEEEecccccCC-C-hHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhh
Q 018405          236 --LGIE-HVGGDFFES--VP---E-A-DTILMKWVLSSF-D-DEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATS  303 (356)
Q Consensus       236 --~~v~-~~~~D~~~~--~~---~-~-D~i~~~~vlh~~-~-~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~  303 (356)
                        .++. ++.+|+.+.  .+   . . |+|+++.+|||. + .++..++|++++++|||||++++.+......       
T Consensus       131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-------  203 (263)
T 2a14_A          131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-------  203 (263)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-------
T ss_pred             HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-------
Confidence              0133 889999873  21   2 2 999999999985 2 3567899999999999999999987543211       


Q ss_pred             hhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405          304 REISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                       +  ...-..   . ....++.++|.++|+++||+++++...
T Consensus       204 -~--~~g~~~---~-~~~~~~~~~l~~~l~~aGF~i~~~~~~  238 (263)
T 2a14_A          204 -Y--MVGKRE---F-SCVALEKGEVEQAVLDAGFDIEQLLHS  238 (263)
T ss_dssp             -E--EETTEE---E-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             -c--eeCCeE---e-eccccCHHHHHHHHHHCCCEEEEEeec
Confidence             0  000000   0 122358999999999999999887653

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.52  E-value=5.3e-14  Score=125.80  Aligned_cols=139  Identities=19%  Similarity=0.178  Sum_probs=106.0

Q ss_pred             HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEE
Q 018405          184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTI  255 (356)
Q Consensus       184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i  255 (356)
                      +++.++ ..+..+|||||||+|.++..+++.  +.+++++|. +.+++.+++.     .+++++.+|+.+ +.+.. |+|
T Consensus       112 ~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i  188 (286)
T 3m70_A          112 VVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFI  188 (286)
T ss_dssp             HHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEE
T ss_pred             HHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEE
Confidence            334444 346789999999999999999987  568999996 7777776543     278999999988 44444 999


Q ss_pred             EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018405          256 LMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKA  335 (356)
Q Consensus       256 ~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a  335 (356)
                      ++..++||+++++...+|++++++|+|||.++++.....+.....                ......++.+++.++++. 
T Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~-  251 (286)
T 3m70_A          189 VSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD-  251 (286)
T ss_dssp             EECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT-
T ss_pred             EEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC-
Confidence            999999999988899999999999999999888776554321110                011234578889998865 


Q ss_pred             CCcceeEE
Q 018405          336 GFKGVNYE  343 (356)
Q Consensus       336 Gf~~~~~~  343 (356)
                       |+++...
T Consensus       252 -~~~~~~~  258 (286)
T 3m70_A          252 -WEFLEYN  258 (286)
T ss_dssp             -SEEEEEE
T ss_pred             -CEEEEEE
Confidence             8877654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.52  E-value=9.1e-14  Score=121.83  Aligned_cols=105  Identities=24%  Similarity=0.378  Sum_probs=84.7

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-c
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-D  253 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D  253 (356)
                      ..+++... ..+..+|||||||+|..+..+++.  +.+++++|. +.+++.++++     .+++++.+|+.+ +.+.. |
T Consensus        31 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD  107 (252)
T 1wzn_A           31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD  107 (252)
T ss_dssp             HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred             HHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCcc
Confidence            44455444 456789999999999999999986  568999996 8888777543     369999999987 55544 9


Q ss_pred             EEEec-ccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          254 TILMK-WVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       254 ~i~~~-~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      +|++. ..+++++.++..++|++++++|+|||++++.
T Consensus       108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            99986 5667777778999999999999999999874

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.52  E-value=1.2e-13  Score=116.95  Aligned_cols=133  Identities=11%  Similarity=0.067  Sum_probs=100.6

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC--cEEEecccccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA--DTILMKWVLSS  263 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~  263 (356)
                      +. +|||||||+|.++..+++.  +.+++++|. +.+++.+++.     .+++++.+|+.+ +.+..  |+|++.  +.|
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~  104 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCH  104 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred             CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence            44 9999999999999999886  568999996 7887777653     378999999988 65543  999985  345


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE  343 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  343 (356)
                      ++.++...+|++++++|+|||++++.+.......       .  .....    ......++++++.++++  ||+++.+.
T Consensus       105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~--~~~~~----~~~~~~~~~~~l~~~l~--Gf~v~~~~  169 (202)
T 2kw5_A          105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ-------Y--NTGGP----KDLDLLPKLETLQSELP--SLNWLIAN  169 (202)
T ss_dssp             CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG-------G--TSCCS----SSGGGCCCHHHHHHHCS--SSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc-------C--CCCCC----CcceeecCHHHHHHHhc--CceEEEEE
Confidence            6767889999999999999999999887543210       0  00000    00123579999999999  99999865


Q ss_pred             Ec
Q 018405          344 YG  345 (356)
Q Consensus       344 ~~  345 (356)
                      ..
T Consensus       170 ~~  171 (202)
T 2kw5_A          170 NL  171 (202)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.51  E-value=7.2e-14  Score=119.10  Aligned_cols=138  Identities=15%  Similarity=0.127  Sum_probs=99.2

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--cEEE
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA--DTIL  256 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~  256 (356)
                      .++..+.  .+..+|||||||+|.++..+     +. +++++|. +.+++.+++. ++++++.+|+.+ +.++.  |+|+
T Consensus        28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~  100 (211)
T 2gs9_A           28 RALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL  100 (211)
T ss_dssp             HHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred             HHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence            4444443  36789999999999998877     44 8999996 8888777654 689999999988 66553  9999


Q ss_pred             ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018405          257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAG  336 (356)
Q Consensus       257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG  336 (356)
                      +.+++||+++  ..++|++++++|+|||++++.++.....     ...........-.........+|.+++.++++  |
T Consensus       101 ~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A          101 LFTTLEFVED--VERVLLEARRVLRPGGALVVGVLEALSP-----WAALYRRLGEKGVLPWAQARFLAREDLKALLG--P  171 (211)
T ss_dssp             EESCTTTCSC--HHHHHHHHHHHEEEEEEEEEEEECTTSH-----HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred             EcChhhhcCC--HHHHHHHHHHHcCCCCEEEEEecCCcCc-----HHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence            9999999965  6899999999999999999987654321     01000000000000001244579999999999  7

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.50  E-value=1.1e-14  Score=130.42  Aligned_cols=138  Identities=14%  Similarity=0.119  Sum_probs=96.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----C-------------------------------
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----L-------------------------------  236 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-------------------------------  236 (356)
                      +..+|||||||+|.+. .++...+..+++++|+ +.+++.++++    +                               
T Consensus        71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            5689999999999944 3444445669999996 8887765431    0                               


Q ss_pred             -CceEEEccCCC--C-----CCC--CcEEEecccccCCCh--HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhh
Q 018405          237 -GIEHVGGDFFE--S-----VPE--ADTILMKWVLSSFDD--EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSR  304 (356)
Q Consensus       237 -~v~~~~~D~~~--~-----~~~--~D~i~~~~vlh~~~~--~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~  304 (356)
                       .++++.+|+.+  +     .++  .|+|++..+||++++  ++..++|++++++|||||+|++.+......        
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~--------  221 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW--------  221 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE--------
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce--------
Confidence             03466668876  2     223  299999999999543  368999999999999999999986442210        


Q ss_pred             hhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405          305 EISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                       ....+.    .. ....++.++|.++|+++||+++++...
T Consensus       222 -~~~~~~----~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~  256 (289)
T 2g72_A          222 -YLAGEA----RL-TVVPVSEEEVREALVRSGYKVRDLRTY  256 (289)
T ss_dssp             -EEETTE----EE-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             -EEcCCe----ee-eeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence             000000    00 123468999999999999999887654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.49  E-value=4e-13  Score=110.58  Aligned_cols=118  Identities=14%  Similarity=0.175  Sum_probs=96.2

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCCC--cEEEecccccCCChH--
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPEA--DTILMKWVLSSFDDE--  267 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~--D~i~~~~vlh~~~~~--  267 (356)
                      +..+|||+|||+|.++..+++..   +++++|. +.+++.   .++++++.+|+.++.+..  |+|+++..+|+.++.  
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~   96 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPI   96 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTT
T ss_pred             CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcccc
Confidence            56799999999999999999876   8999996 778877   468999999998865533  999999888865443  


Q ss_pred             -----HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeE
Q 018405          268 -----QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNY  342 (356)
Q Consensus       268 -----~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~  342 (356)
                           +...+++++.+.+ |||++++.+...                             .+.+++.++++++||+...+
T Consensus        97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~~  146 (170)
T 3q87_B           97 IGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRIL  146 (170)
T ss_dssp             TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEEE
T ss_pred             ccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEEE
Confidence                 4578899999999 999999966321                             13678899999999999887


Q ss_pred             EEcc
Q 018405          343 EYGA  346 (356)
Q Consensus       343 ~~~~  346 (356)
                      ....
T Consensus       147 ~~~~  150 (170)
T 3q87_B          147 KVRK  150 (170)
T ss_dssp             EEEE
T ss_pred             Eeec
Confidence            7654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.49  E-value=1.2e-13  Score=126.65  Aligned_cols=114  Identities=15%  Similarity=0.206  Sum_probs=93.0

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC---------------CCCceEEEc
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS---------------YLGIEHVGG  243 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~  243 (356)
                      .+..+++.+. +.+..+|||||||+|..+..++...+..+++++|+ +.+++.|+.               .++|+++.+
T Consensus       161 ~i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G  239 (438)
T 3uwp_A          161 LVAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  239 (438)
T ss_dssp             HHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred             HHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence            3456777776 78889999999999999999998887777999997 666555532               257999999


Q ss_pred             cCCC-CCC----CCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCC
Q 018405          244 DFFE-SVP----EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVP  297 (356)
Q Consensus       244 D~~~-~~~----~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~  297 (356)
                      |+.+ +++    .+|+|+++++++ +  ++..+.|+++++.|||||+|++.|.+.+.+.
T Consensus       240 D~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~  295 (438)
T 3uwp_A          240 DFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF  295 (438)
T ss_dssp             CTTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred             cccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence            9998 553    459999987764 3  5578889999999999999999999887654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.48  E-value=4e-13  Score=119.51  Aligned_cols=144  Identities=21%  Similarity=0.193  Sum_probs=109.0

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC-CC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP-EA  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~  252 (356)
                      ...+++.++  .+..+|||+|||+|..+..+++.+|+.+++++|. +.+++.++++      ++++++.+|+.++.+ ..
T Consensus        99 ~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  176 (276)
T 2b3t_A           99 VEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQ  176 (276)
T ss_dssp             HHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCC
T ss_pred             HHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCC
Confidence            344555443  4567999999999999999999999999999996 8887777543      479999999988543 33


Q ss_pred             -cEEEec-------------ccccCCCh----------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh
Q 018405          253 -DTILMK-------------WVLSSFDD----------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI  308 (356)
Q Consensus       253 -D~i~~~-------------~vlh~~~~----------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~  308 (356)
                       |+|++.             .+++|.|.          +....+++++.+.|+|||++++...                 
T Consensus       177 fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~-----------------  239 (276)
T 2b3t_A          177 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG-----------------  239 (276)
T ss_dssp             EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------------
T ss_pred             ccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------
Confidence             999997             35554432          3468899999999999999998410                 


Q ss_pred             hhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEcc-CceeEEEEeC
Q 018405          309 LDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGA-CNLYVMEFLK  356 (356)
Q Consensus       309 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~  356 (356)
                                   ..+.+++.++++++||+.+++.... +...++.+++
T Consensus       240 -------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~  275 (276)
T 2b3t_A          240 -------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY  275 (276)
T ss_dssp             -------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred             -------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence                         0246789999999999998887754 4444555543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.48  E-value=5.9e-13  Score=112.84  Aligned_cols=121  Identities=13%  Similarity=0.129  Sum_probs=98.0

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC---C
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP---E  251 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~---~  251 (356)
                      ..++..+. ..+..+|||||||+|.++..+++..|..+++++|. +.+++.++++      ++++++.+|+.+..+   .
T Consensus        30 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  108 (204)
T 3e05_A           30 AVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD  108 (204)
T ss_dssp             HHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred             HHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence            34555565 67789999999999999999999999999999996 8888777643      679999999977332   3


Q ss_pred             CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405          252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL  331 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  331 (356)
                      .|+|++..+++     +...+++++.++|+|||++++.....                             .+.+++.++
T Consensus       109 ~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------------~~~~~~~~~  154 (204)
T 3e05_A          109 PDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL-----------------------------DTLTKAVEF  154 (204)
T ss_dssp             CSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH-----------------------------HHHHHHHHH
T ss_pred             CCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc-----------------------------ccHHHHHHH
Confidence            49999988876     36799999999999999999954321                             135678889


Q ss_pred             HHHcCC
Q 018405          332 AIKAGF  337 (356)
Q Consensus       332 l~~aGf  337 (356)
                      ++++||
T Consensus       155 l~~~g~  160 (204)
T 3e05_A          155 LEDHGY  160 (204)
T ss_dssp             HHHTTC
T ss_pred             HHHCCC
Confidence            999998

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.48  E-value=5e-13  Score=115.62  Aligned_cols=141  Identities=18%  Similarity=0.148  Sum_probs=99.9

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhC----CCCCCceEEEccCCCC-----CCCC-cEEEecc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNA----PSYLGIEHVGGDFFES-----VPEA-DTILMKW  259 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~~-----~~~~-D~i~~~~  259 (356)
                      +.+..+|||+|||+|.++..+++.+|..+++++|. +.+++.+    +..+++.++.+|+.++     .+.. |+|+   
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~---  148 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY---  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence            56778999999999999999999988789999996 7766543    3347899999998762     2233 9988   


Q ss_pred             cccCCChH-HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405          260 VLSSFDDE-QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK  338 (356)
Q Consensus       260 vlh~~~~~-~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  338 (356)
                        |++++. ....+|+++++.|+|||++++. ..........         .         ......+++. +++++||+
T Consensus       149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~---------~---------~~~~~~~~l~-~l~~~Gf~  206 (230)
T 1fbn_A          149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTK---------D---------PKEIFKEQKE-ILEAGGFK  206 (230)
T ss_dssp             --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSS---------C---------HHHHHHHHHH-HHHHHTEE
T ss_pred             --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCC---------C---------HHHhhHHHHH-HHHHCCCE
Confidence              455433 3467799999999999999996 2111100000         0         0001246787 89999999


Q ss_pred             ceeEEEccCc---eeEEEEeC
Q 018405          339 GVNYEYGACN---LYVMEFLK  356 (356)
Q Consensus       339 ~~~~~~~~~~---~~vi~~~~  356 (356)
                      .++..+....   ..++.++|
T Consensus       207 ~~~~~~~~~~~~~~~~v~~~k  227 (230)
T 1fbn_A          207 IVDEVDIEPFEKDHVMFVGIW  227 (230)
T ss_dssp             EEEEEECTTTSTTEEEEEEEE
T ss_pred             EEEEEccCCCccceEEEEEEe
Confidence            9998877543   56666553

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.48  E-value=1.1e-13  Score=117.38  Aligned_cols=129  Identities=12%  Similarity=0.053  Sum_probs=102.2

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCCC-cEEEecccccC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPEA-DTILMKWVLSS  263 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~~-D~i~~~~vlh~  263 (356)
                      .+..+|||||||+|.++..+++ .+..+++++|. +.+++.++++      .++++..+|+.+..+.. |+|++..++|+
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~  137 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI  137 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence            4678999999999999999776 56779999996 8887777543      34999999998754444 99999887764


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE  343 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  343 (356)
                           ...++++++++|+|||++++.+...                             .+.+++.++++++||+.+++.
T Consensus       138 -----~~~~l~~~~~~L~~gG~l~~~~~~~-----------------------------~~~~~~~~~~~~~Gf~~~~~~  183 (205)
T 3grz_A          138 -----LLDLIPQLDSHLNEDGQVIFSGIDY-----------------------------LQLPKIEQALAENSFQIDLKM  183 (205)
T ss_dssp             -----HHHHGGGSGGGEEEEEEEEEEEEEG-----------------------------GGHHHHHHHHHHTTEEEEEEE
T ss_pred             -----HHHHHHHHHHhcCCCCEEEEEecCc-----------------------------ccHHHHHHHHHHcCCceEEee
Confidence                 4789999999999999999955332                             136788999999999999888


Q ss_pred             EccCceeEEEEe
Q 018405          344 YGACNLYVMEFL  355 (356)
Q Consensus       344 ~~~~~~~vi~~~  355 (356)
                      ......+++.-.
T Consensus       184 ~~~~w~~~~~~~  195 (205)
T 3grz_A          184 RAGRWIGLAISR  195 (205)
T ss_dssp             EETTEEEEEEEE
T ss_pred             ccCCEEEEEEec
Confidence            775555555443

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.46  E-value=7e-14  Score=119.88  Aligned_cols=142  Identities=13%  Similarity=0.071  Sum_probs=95.6

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHh----CCC------CCCceEEEccCCC-CCCCC-cEEEe
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKN----APS------YLGIEHVGGDFFE-SVPEA-DTILM  257 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~~v~~~~~D~~~-~~~~~-D~i~~  257 (356)
                      ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.    +++      .++++++.+|+.+ +++.. |.|++
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~  104 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV  104 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence            55778999999999999999999999999999996 664443    322      2589999999988 65544 66653


Q ss_pred             cc---cc--cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405          258 KW---VL--SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA  332 (356)
Q Consensus       258 ~~---vl--h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll  332 (356)
                      ..   .+  ||+++  ...+|++++++|+|||++++...........      ......     ......+..+++.+++
T Consensus       105 ~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~~-----~~~~~~~~~~~l~~~l  171 (218)
T 3mq2_A          105 LMPWGSLLRGVLGS--SPEMLRGMAAVCRPGASFLVALNLHAWRPSV------PEVGEH-----PEPTPDSADEWLAPRY  171 (218)
T ss_dssp             ESCCHHHHHHHHTS--SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBC------GGGTTC-----CCCCHHHHHHHHHHHH
T ss_pred             Eccchhhhhhhhcc--HHHHHHHHHHHcCCCcEEEEEeccccccccc------cccccC-----CccchHHHHHHHHHHH
Confidence            22   22  24433  3799999999999999999943221111000      000000     0011112345688899


Q ss_pred             HHcCCcceeEEEc
Q 018405          333 IKAGFKGVNYEYG  345 (356)
Q Consensus       333 ~~aGf~~~~~~~~  345 (356)
                      +++||++.++...
T Consensus       172 ~~aGf~i~~~~~~  184 (218)
T 3mq2_A          172 AEAGWKLADCRYL  184 (218)
T ss_dssp             HHTTEEEEEEEEE
T ss_pred             HHcCCCceeeecc
Confidence            9999999887664

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.45  E-value=6.7e-13  Score=111.09  Aligned_cols=141  Identities=18%  Similarity=0.194  Sum_probs=109.0

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------C--CceEEEccCCCCCCC-
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------L--GIEHVGGDFFESVPE-  251 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~~~-  251 (356)
                      ..+++.+. ..+..+|||+|||+|.++..+++.  ..+++++|. +.+++.++..      +  +++++.+|+.+..+. 
T Consensus        42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  118 (194)
T 1dus_A           42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR  118 (194)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred             HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence            45566665 567789999999999999999987  778999996 7777766542      3  499999999885443 


Q ss_pred             C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018405          252 A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSE  330 (356)
Q Consensus       252 ~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~  330 (356)
                      . |+|++...+|+ ..+....+++++++.|+|||++++......                             ...++.+
T Consensus       119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~  168 (194)
T 1dus_A          119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ-----------------------------GAKSLAK  168 (194)
T ss_dssp             CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH-----------------------------HHHHHHH
T ss_pred             CceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC-----------------------------ChHHHHH
Confidence            3 99999888875 345688999999999999999999764321                             1235677


Q ss_pred             HHHHcCCcceeEEEccCceeEEEEeC
Q 018405          331 LAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       331 ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      .+++. |..++++....++.++.++|
T Consensus       169 ~l~~~-~~~~~~~~~~~~~~~~~~~k  193 (194)
T 1dus_A          169 YMKDV-FGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             HHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred             HHHHH-hcceEEEecCCcEEEEEEee
Confidence            77777 77777777777888887765

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.44  E-value=4.8e-14  Score=122.50  Aligned_cols=133  Identities=16%  Similarity=0.132  Sum_probs=92.6

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC---CCCCC--cEEE----
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE---SVPEA--DTIL----  256 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~---~~~~~--D~i~----  256 (356)
                      .+..+|||||||+|..+..+++..|. +++++|. |.+++.|++.     .++.++.+|...   +.++.  |.|+    
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence            46789999999999999999887764 7899996 8888887653     457888888654   34443  7765    


Q ss_pred             -ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018405          257 -MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKA  335 (356)
Q Consensus       257 -~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a  335 (356)
                       ....++|+  .+...++++++++|||||++++.+......       .....++        .......+.+...|.++
T Consensus       138 ~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~L~ea  200 (236)
T 3orh_A          138 PLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKYS--------DITIMFEETQVPALLEA  200 (236)
T ss_dssp             CCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTCS--------CHHHHHHHHTHHHHHHH
T ss_pred             ecccchhhh--cchhhhhhhhhheeCCCCEEEEEecCCchh-------hhhhhhh--------hhhhhhHHHHHHHHHHc
Confidence             46667777  458999999999999999998865332110       0000000        00112345677888999


Q ss_pred             CCcceeE
Q 018405          336 GFKGVNY  342 (356)
Q Consensus       336 Gf~~~~~  342 (356)
                      ||++..+
T Consensus       201 GF~~~~i  207 (236)
T 3orh_A          201 GFRRENI  207 (236)
T ss_dssp             TCCGGGE
T ss_pred             CCeEEEE
Confidence            9997654

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.43  E-value=6.1e-13  Score=114.60  Aligned_cols=146  Identities=10%  Similarity=-0.016  Sum_probs=93.6

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc--hHHHHhC---CCC------CCceEEEccCCC-CCCCCcEEEecc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL--PYVIKNA---PSY------LGIEHVGGDFFE-SVPEADTILMKW  259 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a---~~~------~~v~~~~~D~~~-~~~~~D~i~~~~  259 (356)
                      .+..+|||||||+|.++..++++.|+.+++++|.  +.+++.|   +++      +++.++.+|+.+ +....|.|.+..
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~  102 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS  102 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence            4678999999999999999999899999999995  4454444   432      578999999877 321126665555


Q ss_pred             cccCCChH------HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018405          260 VLSSFDDE------QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAI  333 (356)
Q Consensus       260 vlh~~~~~------~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~  333 (356)
                      +.+.|+..      +...+|++++++|||||+++++....+... ..  ..  ......    .+.......+++.++++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~--~~--~~~~~~----~~~~~~~~~~el~~~l~  173 (225)
T 3p2e_A          103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYE-EA--EI--KKRGLP----LLSKAYFLSEQYKAELS  173 (225)
T ss_dssp             EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------CCHHHHHSHHHHHHHH
T ss_pred             EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccch-hc--hh--hhcCCC----CCChhhcchHHHHHHHH
Confidence            55444321      124689999999999999999554433210 00  00  000000    00000112235999999


Q ss_pred             HcCCcceeEEEcc
Q 018405          334 KAGFKGVNYEYGA  346 (356)
Q Consensus       334 ~aGf~~~~~~~~~  346 (356)
                      ++||++..+....
T Consensus       174 ~aGf~v~~~~~~~  186 (225)
T 3p2e_A          174 NSGFRIDDVKELD  186 (225)
T ss_dssp             HHTCEEEEEEEEC
T ss_pred             HcCCCeeeeeecC
Confidence            9999988876553

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.43  E-value=5.2e-13  Score=120.13  Aligned_cols=152  Identities=13%  Similarity=0.069  Sum_probs=98.8

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----C--------CceEEEccCCC---------CCC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----L--------GIEHVGGDFFE---------SVP  250 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--------~v~~~~~D~~~---------~~~  250 (356)
                      +..+|||||||+|..+..++.. ...+++++|+ +.+++.|+++    .        +++|.+.|+..         +.+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            4689999999999877766653 3468999996 8888888753    1        15677888732         234


Q ss_pred             CC--cEEEecccccCC-ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCC---C--------Cchh-hhhhhh----hhh
Q 018405          251 EA--DTILMKWVLSSF-DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVP---E--------NSAT-SREISI----LDT  311 (356)
Q Consensus       251 ~~--D~i~~~~vlh~~-~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~---~--------~~~~-~~~~~~----~~~  311 (356)
                      .+  |+|+|..++|+. ++++...+|++++++|+|||++++..+....-.   .        .... ..+...    .+.
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  206 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR  206 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence            33  999999999974 445678999999999999999998765321100   0        0000 000000    000


Q ss_pred             --hhhhh--cCC--CccCCHHHHHHHHHHcCCcceeEEEc
Q 018405          312 --ICLFQ--VPH--GRERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       312 --~~~~~--~~~--~~~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                        .+...  ...  -...+.+++.++++++||+++.....
T Consensus       207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f  246 (302)
T 2vdw_A          207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF  246 (302)
T ss_dssp             EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred             cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence              00000  000  12457899999999999999887654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.42  E-value=1.5e-13  Score=117.17  Aligned_cols=138  Identities=15%  Similarity=0.085  Sum_probs=90.2

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCC----
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVP----  250 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~----  250 (356)
                      ...+++.+....+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++     .+++++.+|+.++.+    
T Consensus        18 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~   97 (215)
T 4dzr_A           18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAE   97 (215)
T ss_dssp             HHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhh
Confidence            345555555236789999999999999999999999999999996 8888888764     157888888877433    


Q ss_pred             --CC-cEEEeccccc------CCChHHH------------------HHHHHHHHHhCCCCCEEEEEecccCCCCCCchhh
Q 018405          251 --EA-DTILMKWVLS------SFDDEQS------------------LKLLKNCYKALPDGGKLLNVNVTIPEVPENSATS  303 (356)
Q Consensus       251 --~~-D~i~~~~vlh------~~~~~~~------------------~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~  303 (356)
                        .. |+|++....+      +++.+..                  ..++++++++|+|||++++++...          
T Consensus        98 ~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------  167 (215)
T 4dzr_A           98 RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH----------  167 (215)
T ss_dssp             TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT----------
T ss_pred             ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC----------
Confidence              23 9999964443      3322221                  789999999999999965544311          


Q ss_pred             hhhhhhhhhhhhhcCCCccCCHHHHHHHHH--HcCCcceeEEEccC
Q 018405          304 REISILDTICLFQVPHGRERTKQEYSELAI--KAGFKGVNYEYGAC  347 (356)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~--~aGf~~~~~~~~~~  347 (356)
                                         ...+++.++++  ++||..+++.+...
T Consensus       168 -------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~  194 (215)
T 4dzr_A          168 -------------------NQADEVARLFAPWRERGFRVRKVKDLR  194 (215)
T ss_dssp             -------------------SCHHHHHHHTGGGGGGTEECCEEECTT
T ss_pred             -------------------ccHHHHHHHHHHhhcCCceEEEEEecC
Confidence                               13567788888  89998888877653

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.42  E-value=1.4e-12  Score=128.37  Aligned_cols=109  Identities=17%  Similarity=0.184  Sum_probs=89.3

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCC------------CCCceEEEccCCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPS------------YLGIEHVGGDFFE  247 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~  247 (356)
                      ..+++.+. ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++            .++++++.+|+.+
T Consensus       711 e~LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d  789 (950)
T 3htx_A          711 EYALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE  789 (950)
T ss_dssp             HHHHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred             HHHHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence            34444444 4467899999999999999999988 5679999996 888877754            2579999999988


Q ss_pred             -CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          248 -SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       248 -~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                       +.+..  |+|++..++||++++....++++++++|+|| .++|..+.
T Consensus       790 Lp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN  836 (950)
T 3htx_A          790 FDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN  836 (950)
T ss_dssp             CCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred             CCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence             55533  9999999999999988889999999999999 77776543

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.41  E-value=3.2e-13  Score=118.25  Aligned_cols=107  Identities=10%  Similarity=0.105  Sum_probs=81.6

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CC------CC-
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SV------PE-  251 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~------~~-  251 (356)
                      ...+++.++ ..+..+|||||||+|.++..++++  +.+++++|. +.+++.++++..-.++..|+.+ +.      +. 
T Consensus        34 ~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~  110 (261)
T 3iv6_A           34 RENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH  110 (261)
T ss_dssp             HHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred             HHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence            345666665 777899999999999999999986  468999996 8888877654111123333322 11      22 


Q ss_pred             CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      .|+|++..++||++.++...+|++++++| |||++++...
T Consensus       111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            39999999999999888999999999999 9999998643

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.39  E-value=5.9e-13  Score=120.63  Aligned_cols=99  Identities=19%  Similarity=0.211  Sum_probs=80.7

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------------CCceEEEccCCC-C----CC--
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------------LGIEHVGGDFFE-S----VP--  250 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~-~----~~--  250 (356)
                      .+..+|||||||+|..+..+++. +..+++++|. +.+++.++++             .+++++.+|+.+ +    ++  
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~  111 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP  111 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred             CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence            36789999999999999999874 6779999996 7777766542             268999999987 4    32  


Q ss_pred             C-C-cEEEecccccCC--ChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          251 E-A-DTILMKWVLSSF--DDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       251 ~-~-D~i~~~~vlh~~--~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      . . |+|++..++|+.  +.++...+|++++++|+|||.+++..+
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A          112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            2 3 999999999987  445678999999999999999999765

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.39  E-value=3.6e-13  Score=118.96  Aligned_cols=96  Identities=19%  Similarity=0.203  Sum_probs=80.2

Q ss_pred             CCceEEEEcCCccH----HHHHHHHhCC----CCeEEEccc-hHHHHhCCCC----------------------------
Q 018405          193 HVKKLVDVGGGLGA----TLNMIISKYP----RIKGINYDL-PYVIKNAPSY----------------------------  235 (356)
Q Consensus       193 ~~~~vLDiG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~----------------------------  235 (356)
                      +..+|+|+|||+|.    ++..+++.+|    +.++++.|+ +.+++.|++.                            
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    5666666655    478999996 8888777532                            


Q ss_pred             ---------CCceEEEccCCC-CCC--CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          236 ---------LGIEHVGGDFFE-SVP--EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       236 ---------~~v~~~~~D~~~-~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                               .+|.|..+|+.+ +++  .. |+|+|.++|+|++++...+++++++++|+|||+|++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                     258899999998 565  33 999999999999988889999999999999999988

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.39  E-value=1e-12  Score=108.55  Aligned_cols=102  Identities=20%  Similarity=0.281  Sum_probs=82.1

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------C-CceEEEccCCCCCC---
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------L-GIEHVGGDFFESVP---  250 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~~~---  250 (356)
                      ..+++.+. ..+..+|||||||+|.++..+++.+|..+++++|. +.+++.++++      + ++ ++.+|..+..+   
T Consensus        15 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~   92 (178)
T 3hm2_A           15 ALAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP   92 (178)
T ss_dssp             HHHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred             HHHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence            34555555 66788999999999999999999999999999996 7777776542      2 67 88888866333   


Q ss_pred             C-CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          251 E-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       251 ~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      . .|+|++..++|+      ..+++++++.|+|||++++.+.
T Consensus        93 ~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           93 DNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             SCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred             CCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence            2 399999999987      6789999999999999998654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.38  E-value=3e-13  Score=117.47  Aligned_cols=100  Identities=16%  Similarity=0.234  Sum_probs=77.2

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC---CCCCC--cEEEe-cc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE---SVPEA--DTILM-KW  259 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~---~~~~~--D~i~~-~~  259 (356)
                      .+..+|||||||+|.++..+++..+ .+++++|. +.+++.++++     .+++++.+|+.+   +++++  |+|++ .+
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            4678999999999999999966443 38999996 8887777542     468999999865   35543  99998 55


Q ss_pred             c--ccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          260 V--LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       260 v--lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      .  .+++..+....+|++++++|||||++++++..
T Consensus       138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            4  33444445668899999999999999997754

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.37  E-value=2.5e-12  Score=110.31  Aligned_cols=133  Identities=17%  Similarity=0.143  Sum_probs=94.3

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhC----CCCCCceEEEccCCCC--CC---CC-cEEEec
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNA----PSYLGIEHVGGDFFES--VP---EA-DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~~--~~---~~-D~i~~~  258 (356)
                      +++..+|||+|||+|.++..+++.. |+-+++++|. +.+++.+    .+.+++..+.+|...+  .+   .. |+|++.
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d  154 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD  154 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence            7789999999999999999999864 8889999996 7776554    4457899999988763  12   22 887753


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK  338 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  338 (356)
                        +++.  ++...+++++++.|||||+++|.......              +..    .+..  ....+-.+.|+++||+
T Consensus       155 --~~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~--------------d~~----~p~~--~~~~~ev~~L~~~GF~  210 (233)
T 4df3_A          155 --VAQP--EQAAIVVRNARFFLRDGGYMLMAIKARSI--------------DVT----TEPS--EVYKREIKTLMDGGLE  210 (233)
T ss_dssp             --CCCT--THHHHHHHHHHHHEEEEEEEEEEEECCHH--------------HHH----TCCC--HHHHHHHHHHHHTTCC
T ss_pred             --ccCC--hhHHHHHHHHHHhccCCCEEEEEEecccC--------------CCC----CChH--HHHHHHHHHHHHCCCE
Confidence              3333  34688999999999999999986432211              100    0000  1123445678999999


Q ss_pred             ceeEEEccC
Q 018405          339 GVNYEYGAC  347 (356)
Q Consensus       339 ~~~~~~~~~  347 (356)
                      .++.....+
T Consensus       211 l~e~i~L~p  219 (233)
T 4df3_A          211 IKDVVHLDP  219 (233)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEccCC
Confidence            998877643

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.36  E-value=1.2e-12  Score=107.43  Aligned_cols=97  Identities=14%  Similarity=0.103  Sum_probs=79.1

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEEEecccccC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTILMKWVLSS  263 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~  263 (356)
                      .++.+|||+|||+|.++..+....|+++++++|. +.+++.++++     ...++...|..+ +.+.. |+|++..++|+
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHl  127 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPV  127 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHh
Confidence            4688999999999999999999999999999996 8888887653     112344477766 33343 99999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +  ++....+.++.++|+|||.+|-.+
T Consensus       128 L--~~~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          128 L--KQQDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             H--HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred             h--hhhHHHHHHHHHHhCCCCEEEEeC
Confidence            9  446677779999999999998877

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.36  E-value=1.1e-12  Score=111.78  Aligned_cols=101  Identities=16%  Similarity=0.170  Sum_probs=84.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC--cEEEecccccC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA--DTILMKWVLSS  263 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~  263 (356)
                      .+..+|||||||+|.++..+++..+. +++++|. +.+++.+++.    ++++++.+|+.+ +++..  |+|++..++|+
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~  119 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA  119 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence            56789999999999999999998654 8999996 7777766542    589999999988 65543  99999999987


Q ss_pred             CC-------------hHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          264 FD-------------DEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       264 ~~-------------~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      +.             .++..++|++++++|+|||++++.++..
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            65             3467899999999999999999988654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.35  E-value=1.5e-11  Score=104.32  Aligned_cols=122  Identities=16%  Similarity=0.187  Sum_probs=93.7

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------C-CceEEEccCCCCC---CC
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------L-GIEHVGGDFFESV---PE  251 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~~---~~  251 (356)
                      .++..+. ..+..+|||||||+|.++..+++.  ..+++++|. +.+++.++++      + +++++.+|+.+..   +.
T Consensus        46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~  122 (204)
T 3njr_A           46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL  122 (204)
T ss_dssp             HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred             HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence            3455555 677889999999999999999987  778999996 8888777543      3 7999999998722   23


Q ss_pred             CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405          252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL  331 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  331 (356)
                      .|+|++...+    +  .. +++++.++|+|||++++.....                             .+..++.++
T Consensus       123 ~D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~  166 (204)
T 3njr_A          123 PEAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTL-----------------------------ESETLLTQL  166 (204)
T ss_dssp             CSEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSH-----------------------------HHHHHHHHH
T ss_pred             CCEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCc-----------------------------ccHHHHHHH
Confidence            4999987654    1  34 9999999999999999854321                             124577788


Q ss_pred             HHHcCCcceeEE
Q 018405          332 AIKAGFKGVNYE  343 (356)
Q Consensus       332 l~~aGf~~~~~~  343 (356)
                      +++.|+++.++.
T Consensus       167 l~~~g~~i~~i~  178 (204)
T 3njr_A          167 HARHGGQLLRID  178 (204)
T ss_dssp             HHHHCSEEEEEE
T ss_pred             HHhCCCcEEEEE
Confidence            899998877653

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.34  E-value=9.5e-12  Score=105.93  Aligned_cols=137  Identities=13%  Similarity=0.041  Sum_probs=94.9

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH----HHhCCCCCCceEEEccCCCC-----CCCC-cEEEecc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV----IKNAPSYLGIEHVGGDFFES-----VPEA-DTILMKW  259 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~D~~~~-----~~~~-D~i~~~~  259 (356)
                      +++..+|||||||+|..+..+++..+..+++++|. +.+    .+.++...++.++.+|+..+     .++. |+|++. 
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~-  133 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD-  133 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence            55778999999999999999999888778999996 653    44454456888999998763     2333 999986 


Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHH----HHHHHc
Q 018405          260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYS----ELAIKA  335 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~ll~~a  335 (356)
                      +.++   ++...+|++++++|||||++++.-...+              .+         . ..+.+++.    +.++++
T Consensus       134 ~~~~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~--------------~~---------~-~~~~~~~~~~~~~~l~~~  186 (210)
T 1nt2_A          134 IAQK---NQIEILKANAEFFLKEKGEVVIMVKARS--------------ID---------S-TAEPEEVFKSVLKEMEGD  186 (210)
T ss_dssp             CCST---THHHHHHHHHHHHEEEEEEEEEEEEHHH--------------HC---------T-TSCHHHHHHHHHHHHHTT
T ss_pred             ccCh---hHHHHHHHHHHHHhCCCCEEEEEEecCC--------------cc---------c-cCCHHHHHHHHHHHHHhh
Confidence            3322   3355679999999999999999732110              00         0 01233321    237888


Q ss_pred             CCcceeEEEcc---CceeEEEEeC
Q 018405          336 GFKGVNYEYGA---CNLYVMEFLK  356 (356)
Q Consensus       336 Gf~~~~~~~~~---~~~~vi~~~~  356 (356)
                       |++++.....   ..+.++.++|
T Consensus       187 -f~~~~~~~~~p~~~~h~~~~~~~  209 (210)
T 1nt2_A          187 -FKIVKHGSLMPYHRDHIFIHAYR  209 (210)
T ss_dssp             -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred             -cEEeeeecCCCCCCCcEEEEEEc
Confidence             9999987763   2456666553

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.34  E-value=1.8e-12  Score=113.83  Aligned_cols=128  Identities=18%  Similarity=0.214  Sum_probs=96.7

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---C--CceEEEccCCCCCCC-C-cEEEecccccC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---L--GIEHVGGDFFESVPE-A-DTILMKWVLSS  263 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--~v~~~~~D~~~~~~~-~-D~i~~~~vlh~  263 (356)
                      .+..+|||+|||+|.++..+++..+  +++++|. +.+++.++++   .  .+++..+|+.+..+. . |+|+++...| 
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~-  195 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE-  195 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence            4678999999999999999888755  8999996 7777766542   1  288999988764432 3 9999865543 


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE  343 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  343 (356)
                          ....+++++++.|+|||++++.+...                             .+.+++.++++++||+++++.
T Consensus       196 ----~~~~~l~~~~~~LkpgG~lils~~~~-----------------------------~~~~~v~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          196 ----LHAALAPRYREALVPGGRALLTGILK-----------------------------DRAPLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             ----HHHHHHHHHHHHEEEEEEEEEEEEEG-----------------------------GGHHHHHHHHHHTTCEEEEEE
T ss_pred             ----HHHHHHHHHHHHcCCCCEEEEEeecc-----------------------------CCHHHHHHHHHHCCCEEEEEe
Confidence                35789999999999999999965321                             136789999999999998877


Q ss_pred             EccCceeEEEEeC
Q 018405          344 YGACNLYVMEFLK  356 (356)
Q Consensus       344 ~~~~~~~vi~~~~  356 (356)
                      .. .....+.++|
T Consensus       243 ~~-~~W~~l~~~k  254 (254)
T 2nxc_A          243 AE-GEWVLLAYGR  254 (254)
T ss_dssp             EE-TTEEEEEEEC
T ss_pred             cc-CCeEEEEEEC
Confidence            65 3344444544

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.33  E-value=2.1e-12  Score=113.40  Aligned_cols=128  Identities=16%  Similarity=0.146  Sum_probs=99.9

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE  251 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~  251 (356)
                      ...++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.++++       ++++++.+|+.+.+++
T Consensus        82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  160 (255)
T 3mb5_A           82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE  160 (255)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred             HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence            345566665 778899999999999999999998 78999999996 7888777643       4599999999886655


Q ss_pred             C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018405          252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYS  329 (356)
Q Consensus       252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~  329 (356)
                      .  |+|++     +.++  ...+|+++.++|+|||++++..+..+                             ..+++.
T Consensus       161 ~~~D~v~~-----~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~  204 (255)
T 3mb5_A          161 ENVDHVIL-----DLPQ--PERVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLH  204 (255)
T ss_dssp             CSEEEEEE-----CSSC--GGGGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred             CCcCEEEE-----CCCC--HHHHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHH
Confidence            4  99987     3443  46889999999999999999653211                             135667


Q ss_pred             HHHHHcC--CcceeEEEc
Q 018405          330 ELAIKAG--FKGVNYEYG  345 (356)
Q Consensus       330 ~ll~~aG--f~~~~~~~~  345 (356)
                      ++++++|  |..+++...
T Consensus       205 ~~l~~~g~~f~~~~~~e~  222 (255)
T 3mb5_A          205 EKLREFKDYFMKPRTINV  222 (255)
T ss_dssp             HHHHHTGGGBSCCEEECC
T ss_pred             HHHHHcCCCccccEEEEE
Confidence            7888888  887776543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.33  E-value=9.8e-13  Score=113.41  Aligned_cols=114  Identities=15%  Similarity=0.124  Sum_probs=89.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC--CCC-CC--cEEEecccccCC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE--SVP-EA--DTILMKWVLSSF  264 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~--~~~-~~--D~i~~~~vlh~~  264 (356)
                      .+..+|||||||+|.++..+++.  +.+++++|. +.+++.++++ ++++++.+|+.+  +++ +.  |+|++.      
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------  118 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------  118 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence            46789999999999999999987  568999996 8888877653 789999999965  444 33  999987      


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405          265 DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       265 ~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  344 (356)
                        .+...+|++++++|+|||+++..                              +...+.+++.++++++||+...+..
T Consensus       119 --~~~~~~l~~~~~~LkpgG~l~~~------------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~  166 (226)
T 3m33_A          119 --RGPTSVILRLPELAAPDAHFLYV------------------------------GPRLNVPEVPERLAAVGWDIVAEDH  166 (226)
T ss_dssp             --SCCSGGGGGHHHHEEEEEEEEEE------------------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred             --CCHHHHHHHHHHHcCCCcEEEEe------------------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence              12568899999999999999910                              0012345788888999998877654


Q ss_pred             c
Q 018405          345 G  345 (356)
Q Consensus       345 ~  345 (356)
                      .
T Consensus       167 ~  167 (226)
T 3m33_A          167 V  167 (226)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.33  E-value=3.2e-12  Score=106.49  Aligned_cols=133  Identities=14%  Similarity=0.100  Sum_probs=90.0

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC--CCC-CC-cEEEec-
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE--SVP-EA-DTILMK-  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~~-~~-D~i~~~-  258 (356)
                      +++..+|||+|||+|.++..+++.  ..+++++|. +.+++.++++      ++++++..|...  ..+ +. |+|++. 
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~   97 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL   97 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence            457789999999999999999987  778999996 8888877653      578999877655  133 33 999876 


Q ss_pred             ccccCC------ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405          259 WVLSSF------DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA  332 (356)
Q Consensus       259 ~vlh~~------~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll  332 (356)
                      ..+++.      ..++...+|+++++.|+|||++++......... .                    .......+|.+.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~--------------------~~~~~~~~~~~~l  156 (185)
T 3mti_A           98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGG-D--------------------MEKDAVLEYVIGL  156 (185)
T ss_dssp             C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-------C--------------------HHHHHHHHHHHHS
T ss_pred             CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCC-H--------------------HHHHHHHHHHHhC
Confidence            333320      225567899999999999999999765432110 0                    0001134555555


Q ss_pred             HHcCCcceeEEEcc
Q 018405          333 IKAGFKGVNYEYGA  346 (356)
Q Consensus       333 ~~aGf~~~~~~~~~  346 (356)
                      ...+|.+.......
T Consensus       157 ~~~~~~~~~~~~~~  170 (185)
T 3mti_A          157 DQRVFTAMLYQPLN  170 (185)
T ss_dssp             CTTTEEEEEEEESS
T ss_pred             CCceEEEEEehhhc
Confidence            66778888776653

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.33  E-value=7.9e-12  Score=106.73  Aligned_cols=98  Identities=19%  Similarity=0.232  Sum_probs=78.3

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCCC--cEEEeccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPEA--DTILMKWV  260 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~--D~i~~~~v  260 (356)
                      +..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++      ++++++.+|+.+ +  ++.+  |+|++...
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            467999999999999999999999999999996 8887777542      589999999987 4  4443  99998865


Q ss_pred             ccCCChH------HHHHHHHHHHHhCCCCCEEEEEe
Q 018405          261 LSSFDDE------QSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       261 lh~~~~~------~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      ..+....      ....+|+++.++|+|||.+++..
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  156 (214)
T 1yzh_A          121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  156 (214)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence            4322110      12589999999999999998854

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.32  E-value=4.2e-12  Score=109.94  Aligned_cols=141  Identities=14%  Similarity=0.010  Sum_probs=96.0

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hH----HHHhCCCCCCceEEEccCCCC--C---CCC-cEEEec
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PY----VIKNAPSYLGIEHVGGDFFES--V---PEA-DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~D~~~~--~---~~~-D~i~~~  258 (356)
                      +.+..+|||+|||+|.++..+++.+ |..+++++|. +.    +.+.++.+++++++.+|+.++  .   +.. |+|++.
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence            5677899999999999999999986 7789999996 54    345555457899999999872  2   223 999985


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK  338 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  338 (356)
                      ..    ..+....++++++++|+|||++++.-.........          ...         .+-..+ .++|+++||+
T Consensus       155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~---------~~~~~~-~~~l~~~Gf~  210 (233)
T 2ipx_A          155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTA----------SAE---------AVFASE-VKKMQQENMK  210 (233)
T ss_dssp             CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSS----------CHH---------HHHHHH-HHTTGGGTEE
T ss_pred             CC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCC----------CHH---------HHHHHH-HHHHHHCCCc
Confidence            44    22345677999999999999999932210000000          000         001123 5889999999


Q ss_pred             ceeEEEccCc---eeEEEEe
Q 018405          339 GVNYEYGACN---LYVMEFL  355 (356)
Q Consensus       339 ~~~~~~~~~~---~~vi~~~  355 (356)
                      +++..+....   ..++.++
T Consensus       211 ~~~~~~~~~~~~~~~~v~~~  230 (233)
T 2ipx_A          211 PQEQLTLEPYERDHAVVVGV  230 (233)
T ss_dssp             EEEEEECTTTSSSEEEEEEE
T ss_pred             eEEEEecCCccCCcEEEEEE
Confidence            9987765432   4555443

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.31  E-value=1.1e-12  Score=116.68  Aligned_cols=125  Identities=10%  Similarity=0.073  Sum_probs=93.2

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCCC-
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPEA-  252 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~-  252 (356)
                      .++..+. +.+..+|||+|||+|..+..+++. .|..+++++|. +.+++.+++.       ++++++.+|+.++.++. 
T Consensus       101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~  179 (275)
T 1yb2_A          101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM  179 (275)
T ss_dssp             -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred             HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence            4555555 677889999999999999999997 78899999996 7777665432       47999999998865543 


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL  331 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  331 (356)
                       |+|++     ++++  ...+|+++.++|+|||++++..+...                             ..+++.+.
T Consensus       180 fD~Vi~-----~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~  223 (275)
T 1yb2_A          180 YDAVIA-----DIPD--PWNHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS  223 (275)
T ss_dssp             EEEEEE-----CCSC--GGGSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred             ccEEEE-----cCcC--HHHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence             99998     4444  46899999999999999999763210                             13456667


Q ss_pred             HHHcCCcceeEEE
Q 018405          332 AIKAGFKGVNYEY  344 (356)
Q Consensus       332 l~~aGf~~~~~~~  344 (356)
                      ++++||+.++...
T Consensus       224 l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          224 LSASGMHHLETVE  236 (275)
T ss_dssp             SGGGTEEEEEEEE
T ss_pred             HHHCCCeEEEEEE
Confidence            7778887776654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.31  E-value=4.5e-12  Score=105.76  Aligned_cols=121  Identities=19%  Similarity=0.168  Sum_probs=93.5

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCC--CC
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVP--EA  252 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~--~~  252 (356)
                      .+++.+. ..+..+|||+|||+|..+..+++..  .+++++|. +.+++.+++.       +++++..+|+.++.+  ..
T Consensus        24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (192)
T 1l3i_A           24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD  100 (192)
T ss_dssp             HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred             HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence            4445455 6678899999999999999999877  78999996 7777766542       578999999876333  23


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL  331 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l  331 (356)
                       |+|++..++++     ...+++++.++|+|||++++.....                             .+..++.++
T Consensus       101 ~D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~~~~~~~~  146 (192)
T 1l3i_A          101 IDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAILL-----------------------------ETKFEAMEC  146 (192)
T ss_dssp             EEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEECBH-----------------------------HHHHHHHHH
T ss_pred             CCEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEecCc-----------------------------chHHHHHHH
Confidence             99999988765     4789999999999999999865321                             124578889


Q ss_pred             HHHcCCcce
Q 018405          332 AIKAGFKGV  340 (356)
Q Consensus       332 l~~aGf~~~  340 (356)
                      +++.||.+.
T Consensus       147 l~~~g~~~~  155 (192)
T 1l3i_A          147 LRDLGFDVN  155 (192)
T ss_dssp             HHHTTCCCE
T ss_pred             HHHCCCceE
Confidence            999999543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.31  E-value=9.4e-12  Score=110.10  Aligned_cols=96  Identities=15%  Similarity=0.212  Sum_probs=79.7

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCCcEEEeccccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEADTILMKWVLS  262 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~D~i~~~~vlh  262 (356)
                      ++++.+|||||||+|.++..++.+.++.+++++|. +.+++.|+++      ++++++.+|..+ +....|+|++...  
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~--  197 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL--  197 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence            77899999999999988777777778999999996 8888888653      689999999987 4222399998655  


Q ss_pred             CCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          263 SFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                       .  ++..++++++++.|+|||++++.+.
T Consensus       198 -~--~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          198 -A--EPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             -C--SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             -c--cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence             2  3478999999999999999999763

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.30  E-value=8.5e-12  Score=107.66  Aligned_cols=128  Identities=18%  Similarity=0.130  Sum_probs=95.0

Q ss_pred             CCCCceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC--CCCCC--cEEEecc
Q 018405          191 FEHVKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE--SVPEA--DTILMKW  259 (356)
Q Consensus       191 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~--~~~~~--D~i~~~~  259 (356)
                      +++..+|||+||| +|.++..+++.. ..+++++|. +.+++.++++     .+++++.+|+..  +.++.  |+|++..
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np  131 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP  131 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence            4577899999999 999999999986 778999996 8888777643     269999999643  44433  9999987


Q ss_pred             cccCCChH-----------------HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCcc
Q 018405          260 VLSSFDDE-----------------QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRE  322 (356)
Q Consensus       260 vlh~~~~~-----------------~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (356)
                      ..++.++.                 ....+++++.+.|+|||+++++-+..                            .
T Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------------~  183 (230)
T 3evz_A          132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK----------------------------E  183 (230)
T ss_dssp             CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC----------------------------H
T ss_pred             CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc----------------------------H
Confidence            76654332                 23789999999999999999953211                            0


Q ss_pred             CCHHHHHHHHHHcCCcceeEEEccC
Q 018405          323 RTKQEYSELAIKAGFKGVNYEYGAC  347 (356)
Q Consensus       323 ~t~~e~~~ll~~aGf~~~~~~~~~~  347 (356)
                      ...+++.++++++||++..+....+
T Consensus       184 ~~~~~~~~~l~~~g~~~~~~~~~~g  208 (230)
T 3evz_A          184 KLLNVIKERGIKLGYSVKDIKFKVG  208 (230)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred             hHHHHHHHHHHHcCCceEEEEecCC
Confidence            1246888999999998777655543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.30  E-value=3e-12  Score=107.77  Aligned_cols=103  Identities=15%  Similarity=0.134  Sum_probs=80.9

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-C-CC-CC-cEEEe
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-S-VP-EA-DTILM  257 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~-~~-~~-D~i~~  257 (356)
                      +++..+|||+|||+|..+..+++.+ |..+++++|. +.+++.++++       ++++++.+|+.+ + .. +. |+|++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            4577899999999999999999986 6779999996 8888777543       579999999876 3 33 33 99998


Q ss_pred             ccccc-------CCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          258 KWVLS-------SFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       258 ~~vlh-------~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      ...+.       ....++..++++++.++|+|||++++.....
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  142 (197)
T 3eey_A          100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG  142 (197)
T ss_dssp             EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred             cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence            76551       1122356789999999999999999987543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.30  E-value=3.6e-12  Score=110.91  Aligned_cols=120  Identities=16%  Similarity=0.115  Sum_probs=92.9

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCC----CC-cEEEec
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVP----EA-DTILMK  258 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~----~~-D~i~~~  258 (356)
                      .+..+|||||||+|..+..++...|+.+++++|. +.+++.+++.      ++++++.+|+.+ +.+    .. |+|++.
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence            4678999999999999999998889999999996 8777776542      469999999876 432    33 999987


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK  338 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  338 (356)
                      .+      .+...+++.++++|+|||++++.......                           ...+++.+.++++||+
T Consensus       149 ~~------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~---------------------------~~~~~~~~~l~~~g~~  195 (240)
T 1xdz_A          149 AV------ARLSVLSELCLPLVKKNGLFVALKAASAE---------------------------EELNAGKKAITTLGGE  195 (240)
T ss_dssp             CC------SCHHHHHHHHGGGEEEEEEEEEEECC-CH---------------------------HHHHHHHHHHHHTTEE
T ss_pred             cc------CCHHHHHHHHHHhcCCCCEEEEEeCCCch---------------------------HHHHHHHHHHHHcCCe
Confidence            63      23689999999999999999886321100                           0134677889999999


Q ss_pred             ceeEEE
Q 018405          339 GVNYEY  344 (356)
Q Consensus       339 ~~~~~~  344 (356)
                      +.+...
T Consensus       196 ~~~~~~  201 (240)
T 1xdz_A          196 LENIHS  201 (240)
T ss_dssp             EEEEEE
T ss_pred             EeEEEE
Confidence            887754

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.29  E-value=1.9e-11  Score=105.22  Aligned_cols=141  Identities=16%  Similarity=0.084  Sum_probs=96.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHH----hCCCCCCceEEEccCCCC-----CCCC-cEEEec
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIK----NAPSYLGIEHVGGDFFES-----VPEA-DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~D~~~~-----~~~~-D~i~~~  258 (356)
                      +.+..+|||+|||+|.++..+++.+ |+.+++++|. +.+++    .++..++++++.+|+.++     .++. |+|++.
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            5577899999999999999999885 6679999996 64443    344447899999999872     2333 999975


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK  338 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  338 (356)
                      ..    ..+....++++++++|+|||++++. ....... .        ..         .....+.+++.++ +++ |+
T Consensus       151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~-~--------~~---------~~~~~~~~~l~~l-~~~-f~  205 (227)
T 1g8a_A          151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSID-V--------TK---------EPEQVFREVEREL-SEY-FE  205 (227)
T ss_dssp             CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTC-T--------TS---------CHHHHHHHHHHHH-HTT-SE
T ss_pred             CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCC-C--------CC---------ChhhhhHHHHHHH-Hhh-ce
Confidence            44    1223456699999999999999997 2111100 0        00         0001235677777 777 99


Q ss_pred             ceeEEEccCc---eeEEEEeC
Q 018405          339 GVNYEYGACN---LYVMEFLK  356 (356)
Q Consensus       339 ~~~~~~~~~~---~~vi~~~~  356 (356)
                      +++.......   ..++.++|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~  226 (227)
T 1g8a_A          206 VIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             EEEEEECTTTSSSEEEEEEEC
T ss_pred             eeeEeccCcccCCCEEEEEEe
Confidence            9988776443   55666554

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.28  E-value=4.1e-12  Score=104.97  Aligned_cols=109  Identities=15%  Similarity=0.056  Sum_probs=84.8

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCC-CC---CCC--cEEEecccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE-SV---PEA--DTILMKWVL  261 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~---~~~--D~i~~~~vl  261 (356)
                      .++..+|||||||.                +.+|. +.+++.++++  .+++++.+|+.+ +.   ++.  |+|++..++
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l   73 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP   73 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence            56789999999996                23785 7788777654  369999999987 54   443  999999999


Q ss_pred             cCC-ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCC
Q 018405          262 SSF-DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGF  337 (356)
Q Consensus       262 h~~-~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf  337 (356)
                      ||+ ++  ..++|++++++|||||++++.++......                    .....++.++|.++++++||
T Consensus        74 ~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           74 GSTTLH--SAEILAEIARILRPGGCLFLKEPVETAVD--------------------NNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             TCCCCC--CHHHHHHHHHHEEEEEEEEEEEEEESSSC--------------------SSSSSCCHHHHHHHHHHTTC
T ss_pred             hhcccC--HHHHHHHHHHHCCCCEEEEEEcccccccc--------------------cccccCCHHHHHHHHHHCCC
Confidence            998 55  58999999999999999999665432210                    01223678999999999999

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.27  E-value=5.9e-12  Score=110.86  Aligned_cols=97  Identities=15%  Similarity=0.158  Sum_probs=78.7

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChHH
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQ  268 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~  268 (356)
                      +..+|||||||+|.++..+++.  +.+++++|. +.+++.+++...-.++.+|+.+ +++..  |+|++..+++|+.++ 
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~-  130 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN-  130 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence            6789999999999999999986  568999996 8888777654222388999887 66543  999999877766433 


Q ss_pred             HHHHHHHHHHhCCCCCEEEEEecc
Q 018405          269 SLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       269 ~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      ...+|++++++|+|||++++..+.
T Consensus       131 ~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          131 KDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             HHHHHHHHHHHcCCCeEEEEEeCC
Confidence            789999999999999999997654

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.27  E-value=1e-11  Score=111.90  Aligned_cols=129  Identities=17%  Similarity=0.188  Sum_probs=93.9

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC-CC--C-CC-cEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE-SV--P-EA-DTI  255 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~-~~--~-~~-D~i  255 (356)
                      .++.+|||||||+|..+..+++..+..+++++|+ +.+++.+++          .++++++.+|..+ ..  + +. |+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            4668999999999999999998877889999996 777776643          2679999999876 22  2 33 999


Q ss_pred             EecccccCCChHHH--HHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018405          256 LMKWVLSSFDDEQS--LKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAI  333 (356)
Q Consensus       256 ~~~~vlh~~~~~~~--~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~  333 (356)
                      ++....++.+....  ..++++++++|+|||++++.....              ..           ......++.+.++
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~-----------~~~~~~~~~~~l~  228 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WL-----------DLELIEKMSRFIR  228 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TT-----------CHHHHHHHHHHHH
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------cc-----------chHHHHHHHHHHH
Confidence            99777766544333  689999999999999999863210              00           0123578899999


Q ss_pred             HcCCcceeEEEc
Q 018405          334 KAGFKGVNYEYG  345 (356)
Q Consensus       334 ~aGf~~~~~~~~  345 (356)
                      ++||..++....
T Consensus       229 ~~GF~~v~~~~~  240 (304)
T 3bwc_A          229 ETGFASVQYALM  240 (304)
T ss_dssp             HHTCSEEEEEEC
T ss_pred             hCCCCcEEEEEe
Confidence            999998887654

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.27  E-value=5e-11  Score=102.48  Aligned_cols=150  Identities=15%  Similarity=0.087  Sum_probs=97.4

Q ss_pred             HHHHHHhcC--CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHH----HHhCCCCCCceEEEccCCCCC----
Q 018405          182 EKVLESYKG--FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYV----IKNAPSYLGIEHVGGDFFESV----  249 (356)
Q Consensus       182 ~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~D~~~~~----  249 (356)
                      ..++..++.  +++..+|||+|||+|..+..+++.. |+-+++++|. +.+    ++.++++.++.++.+|...+.    
T Consensus        63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~  142 (232)
T 3id6_C           63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKS  142 (232)
T ss_dssp             HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTT
T ss_pred             HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhc
Confidence            344444432  6678999999999999999999864 6779999996 654    344555578999999987631    


Q ss_pred             -CCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHH
Q 018405          250 -PEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQE  327 (356)
Q Consensus       250 -~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e  327 (356)
                       .+. |+|++....   + ++...+++.+++.|+|||++++......              .+..     ..-. ...++
T Consensus       143 ~~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~--------------~d~t-----~~~~-e~~~~  198 (232)
T 3id6_C          143 VVENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARS--------------IDVT-----KDPK-EIYKT  198 (232)
T ss_dssp             TCCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC--------------------------CCSS-SSTTH
T ss_pred             cccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCC--------------cccC-----CCHH-HHHHH
Confidence             223 999886443   2 2344455667779999999999732211              1100     0000 11234


Q ss_pred             HHHHHHHcCCcceeEEEccC---ceeEEEEe
Q 018405          328 YSELAIKAGFKGVNYEYGAC---NLYVMEFL  355 (356)
Q Consensus       328 ~~~ll~~aGf~~~~~~~~~~---~~~vi~~~  355 (356)
                      ..+.|+++||++++.....+   .+.++.++
T Consensus       199 ~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~  229 (232)
T 3id6_C          199 EVEKLENSNFETIQIINLDPYDKDHAIVLSK  229 (232)
T ss_dssp             HHHHHHHTTEEEEEEEECTTTCSSCEEEEEE
T ss_pred             HHHHHHHCCCEEEEEeccCCCcCceEEEEEE
Confidence            55677889999999887643   35555554

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.27  E-value=7.2e-12  Score=115.99  Aligned_cols=107  Identities=17%  Similarity=0.215  Sum_probs=85.4

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---------CCceEEEccCCCCCCCC
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---------LGIEHVGGDFFESVPEA  252 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~~~~~~  252 (356)
                      .+++.++ ..+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++         .++++..+|+.++.+..
T Consensus       213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~  291 (375)
T 4dcm_A          213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF  291 (375)
T ss_dssp             HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred             HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence            4556565 44558999999999999999999999999999996 8888777653         14788999999866643


Q ss_pred             --cEEEecccccC---CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          253 --DTILMKWVLSS---FDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       253 --D~i~~~~vlh~---~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                        |+|++...+|+   .++....++++++.+.|+|||+++++.
T Consensus       292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence              99999999885   334445689999999999999999965

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.26  E-value=5.3e-13  Score=117.19  Aligned_cols=145  Identities=13%  Similarity=0.028  Sum_probs=94.9

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC----CCC----CC-cEE
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE----SVP----EA-DTI  255 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~----~~~----~~-D~i  255 (356)
                      +..+|||+|||+|.++..++.+.|+.+++++|. +.+++.|+++       ++++++.+|+.+    +.+    .. |+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            467999999999999999999888899999996 8888777542       359999999543    343    23 999


Q ss_pred             EecccccCCCh-------------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCcc
Q 018405          256 LMKWVLSSFDD-------------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRE  322 (356)
Q Consensus       256 ~~~~vlh~~~~-------------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (356)
                      ++.-..|+...             +....++++++++|+|||.+.+++.+....      ........  +.. ...+..
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~------~~~l~~~g--~~~-~~~~~~  215 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS------LQLKKRLR--WYS-CMLGKK  215 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH------HHHGGGBS--CEE-EEESST
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH------HhcccceE--EEE-ECCCCh
Confidence            99866664431             112356788999999999998876543210      00000000  000 012334


Q ss_pred             CCHHHHHHHHHHcCCcceeEEEcc
Q 018405          323 RTKQEYSELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       323 ~t~~e~~~ll~~aGf~~~~~~~~~  346 (356)
                      .+.+++.++++++||+.+++....
T Consensus       216 ~~~~~~~~~l~~~Gf~~v~~~~~~  239 (254)
T 2h00_A          216 CSLAPLKEELRIQGVPKVTYTEFC  239 (254)
T ss_dssp             TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred             hHHHHHHHHHHHcCCCceEEEEEe
Confidence            456889999999999998877654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.26  E-value=2.7e-11  Score=113.26  Aligned_cols=113  Identities=15%  Similarity=0.189  Sum_probs=87.8

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhC-------CC--------CCCceEEEc
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNA-------PS--------YLGIEHVGG  243 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~~v~~~~~  243 (356)
                      .+..+++.+. +.+..+|||||||+|.++..+++.++..+++++|+ +.+++.|       +.        ..+++++.+
T Consensus       230 ~v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g  308 (433)
T 1u2z_A          230 FLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  308 (433)
T ss_dssp             HHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence            3456666666 77889999999999999999999888788999996 6665555       32        257899887


Q ss_pred             cCCC-C--C----CCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCC
Q 018405          244 DFFE-S--V----PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV  296 (356)
Q Consensus       244 D~~~-~--~----~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~  296 (356)
                      |.+. +  +    ...|+|++.++++ .  ++....|+++.+.|+|||++++.+.+.+..
T Consensus       309 D~~~~~~~~~~~~~~FDvIvvn~~l~-~--~d~~~~L~el~r~LKpGG~lVi~d~f~p~~  365 (433)
T 1u2z_A          309 KSFVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKVGCKIISLKSLRSLT  365 (433)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             CccccccccccccCCCCEEEEeCccc-c--ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence            6443 2  1    2249999987774 2  457788999999999999999998877654

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.26  E-value=2.1e-11  Score=107.25  Aligned_cols=135  Identities=15%  Similarity=0.122  Sum_probs=98.9

Q ss_pred             CC-CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-C--CCC-C-cEEE
Q 018405          191 FE-HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-S--VPE-A-DTIL  256 (356)
Q Consensus       191 ~~-~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~--~~~-~-D~i~  256 (356)
                      .+ +..+|||+|||+|..+..++++.+. +++++|+ +.+++.++++       ++++++.+|+.+ .  ++. . |+|+
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence            66 7889999999999999999998776 9999996 8887777543       479999999987 3  333 3 9999


Q ss_pred             ecccccCC------------------ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC
Q 018405          257 MKWVLSSF------------------DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP  318 (356)
Q Consensus       257 ~~~vlh~~------------------~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (356)
                      ++-..+..                  .......+++.+.++|+|||+++++..   .                       
T Consensus       125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~-----------------------  178 (259)
T 3lpm_A          125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P-----------------------  178 (259)
T ss_dssp             ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------------
T ss_pred             ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------------
Confidence            96444322                  113456899999999999999999421   1                       


Q ss_pred             CCccCCHHHHHHHHHHcCCcceeEEEcc------CceeEEEEeC
Q 018405          319 HGRERTKQEYSELAIKAGFKGVNYEYGA------CNLYVMEFLK  356 (356)
Q Consensus       319 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~------~~~~vi~~~~  356 (356)
                          ....++.+.+++.||...++.+..      ....+++++|
T Consensus       179 ----~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k  218 (259)
T 3lpm_A          179 ----ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIK  218 (259)
T ss_dssp             ----TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEE
T ss_pred             ----HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEe
Confidence                124577888899999988776642      2345666543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.26  E-value=1.1e-11  Score=108.80  Aligned_cols=127  Identities=16%  Similarity=0.131  Sum_probs=97.5

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP  250 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~  250 (356)
                      ...++..++ +.+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++.       ++++++.+|+.+ +++
T Consensus        85 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~  163 (258)
T 2pwy_A           85 ASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE  163 (258)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred             HHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence            345666666 778899999999999999999998 67889999996 7777766532       579999999988 466


Q ss_pred             CC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405          251 EA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY  328 (356)
Q Consensus       251 ~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~  328 (356)
                      +.  |+|++     ++++  ...+|+++.++|+|||++++..+..+                             ...++
T Consensus       164 ~~~~D~v~~-----~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~  207 (258)
T 2pwy_A          164 EAAYDGVAL-----DLME--PWKVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLEL  207 (258)
T ss_dssp             TTCEEEEEE-----ESSC--GGGGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHH
T ss_pred             CCCcCEEEE-----CCcC--HHHHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHH
Confidence            43  99997     3443  45899999999999999999764210                             12456


Q ss_pred             HHHHHHcCCcceeEEE
Q 018405          329 SELAIKAGFKGVNYEY  344 (356)
Q Consensus       329 ~~ll~~aGf~~~~~~~  344 (356)
                      .+.++++||..+++..
T Consensus       208 ~~~l~~~gf~~~~~~~  223 (258)
T 2pwy_A          208 VRAAEAHPFRLERVLE  223 (258)
T ss_dssp             HHHHTTTTEEEEEEEE
T ss_pred             HHHHHHCCCceEEEEE
Confidence            6677788888776554

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.25  E-value=4.2e-12  Score=116.45  Aligned_cols=110  Identities=19%  Similarity=0.252  Sum_probs=88.4

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCCC-cE
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPEA-DT  254 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~-D~  254 (356)
                      ..+++.++ .....+|||+|||+|.++..+++..|+.+++++|. +.+++.++++     ..++++.+|+.+..+.. |+
T Consensus       186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~  264 (343)
T 2pjd_A          186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM  264 (343)
T ss_dssp             HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred             HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence            45566664 34567999999999999999999999999999996 7777777543     24678899988743444 99


Q ss_pred             EEecccccC---CChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          255 ILMKWVLSS---FDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       255 i~~~~vlh~---~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      |++..++|+   .+.+...++|++++++|+|||+++++...
T Consensus       265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            999999986   23456789999999999999999997653

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.25  E-value=4.1e-11  Score=101.04  Aligned_cols=106  Identities=16%  Similarity=0.206  Sum_probs=80.1

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC--CCeEEEccchHHHHhCCCCCCceEEEccCCC-C---------
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP--RIKGINYDLPYVIKNAPSYLGIEHVGGDFFE-S---------  248 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~---------  248 (356)
                      +..+.+.+..+.+..+|||||||+|.++..+++++|  +.+++++|...+    ...++++++.+|+.+ +         
T Consensus        10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~   85 (201)
T 2plw_A           10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINY   85 (201)
T ss_dssp             HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC-----
T ss_pred             HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhccccc
Confidence            344556665356778999999999999999999998  689999997442    123679999999987 4         


Q ss_pred             ----------------CCC-C-cEEEecccccCCC----hHH-----HHHHHHHHHHhCCCCCEEEEEe
Q 018405          249 ----------------VPE-A-DTILMKWVLSSFD----DEQ-----SLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       249 ----------------~~~-~-D~i~~~~vlh~~~----~~~-----~~~~L~~~~~~L~pgG~lii~e  290 (356)
                                      ++. . |+|++...+|+..    +..     ..++|++++++|+|||++++..
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A           86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence                            343 3 9999988877632    111     1358999999999999998843

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.25  E-value=1.4e-11  Score=105.14  Aligned_cols=98  Identities=16%  Similarity=0.191  Sum_probs=76.4

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCCC--cEEEeccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPEA--DTILMKWV  260 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~--D~i~~~~v  260 (356)
                      +..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++      ++++++.+|+.+ +  ++.+  |.|++...
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            457899999999999999999999999999996 7887776542      579999999876 3  4443  98877544


Q ss_pred             ccCCChHH------HHHHHHHHHHhCCCCCEEEEEe
Q 018405          261 LSSFDDEQ------SLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       261 lh~~~~~~------~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      ..+.....      ...+|+++++.|+|||.+++..
T Consensus       118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            32211100      2689999999999999999854

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.24  E-value=6.3e-12  Score=107.66  Aligned_cols=98  Identities=12%  Similarity=0.172  Sum_probs=76.4

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC----CCCC--cEEEecc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES----VPEA--DTILMKW  259 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~----~~~~--D~i~~~~  259 (356)
                      +..+|||||||+|.++..+++.+|+..++++|. +.+++.++++      .+++++.+|+.+.    ++.+  |.|++.+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            567999999999999999999999999999996 7777766432      5799999997662    4544  9998875


Q ss_pred             cccCCChHHH------HHHHHHHHHhCCCCCEEEEEe
Q 018405          260 VLSSFDDEQS------LKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       260 vlh~~~~~~~------~~~L~~~~~~L~pgG~lii~e  290 (356)
                      ..........      ..++++++++|+|||++++..
T Consensus       114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            4432222111      259999999999999999865

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.24  E-value=2.5e-11  Score=100.41  Aligned_cols=121  Identities=11%  Similarity=0.057  Sum_probs=93.3

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCC--C
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPE--A  252 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~--~  252 (356)
                      ..+++.+. ..+..+|||+|||+|.++..+++  +..+++++|. +.+++.++++      ++++++.+|+.++.++  .
T Consensus        25 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~  101 (183)
T 2yxd_A           25 AVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF  101 (183)
T ss_dssp             HHHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred             HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence            34555555 66778999999999999999998  8889999996 7777777643      5799999998874443  3


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA  332 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll  332 (356)
                      |+|++..+ +     +...+++++++.  |||++++.....                             .+..++.+.+
T Consensus       102 D~i~~~~~-~-----~~~~~l~~~~~~--~gG~l~~~~~~~-----------------------------~~~~~~~~~l  144 (183)
T 2yxd_A          102 NKAFIGGT-K-----NIEKIIEILDKK--KINHIVANTIVL-----------------------------ENAAKIINEF  144 (183)
T ss_dssp             SEEEECSC-S-----CHHHHHHHHHHT--TCCEEEEEESCH-----------------------------HHHHHHHHHH
T ss_pred             cEEEECCc-c-----cHHHHHHHHhhC--CCCEEEEEeccc-----------------------------ccHHHHHHHH
Confidence            99999888 2     257889999988  999999966321                             0135678889


Q ss_pred             HHcCCcceeE
Q 018405          333 IKAGFKGVNY  342 (356)
Q Consensus       333 ~~aGf~~~~~  342 (356)
                      +++||.+..+
T Consensus       145 ~~~g~~~~~~  154 (183)
T 2yxd_A          145 ESRGYNVDAV  154 (183)
T ss_dssp             HHTTCEEEEE
T ss_pred             HHcCCeEEEE
Confidence            9999876654

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.23  E-value=8.9e-12  Score=114.47  Aligned_cols=106  Identities=21%  Similarity=0.165  Sum_probs=85.2

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCCCC-
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-  252 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-  252 (356)
                      ..+++.+. ..+..+|||||||+|.++..+++. +..+++++|...+++.+++.       ++++++.+|+.+ +.++. 
T Consensus        40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~  117 (348)
T 2y1w_A           40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV  117 (348)
T ss_dssp             HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred             HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence            34555554 557789999999999999988875 55689999974465555432       579999999988 55555 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      |+|++..+++|+..+.....+.++++.|+|||++++.
T Consensus       118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          118 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             eEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            9999999999988777888999999999999999854

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.23  E-value=9e-12  Score=108.93  Aligned_cols=121  Identities=14%  Similarity=0.004  Sum_probs=93.5

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCC----CC-cEEEec
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVP----EA-DTILMK  258 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~----~~-D~i~~~  258 (356)
                      .+..+|||||||+|..+..++..+|+.+++++|. +.+++.++++      .+++++.+|+.+ +..    .. |+|++.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            4678999999999999999999999999999996 8877777543      469999999877 431    23 999987


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK  338 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  338 (356)
                      .+-      +...+++.+.+.|+|||++++.......                           ....++...+++.||+
T Consensus       159 a~~------~~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~~~~l~~~G~~  205 (249)
T 3g89_A          159 AVA------PLCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPLPPALERLGGR  205 (249)
T ss_dssp             SSC------CHHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTHHHHHHHHTEE
T ss_pred             CcC------CHHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHcCCe
Confidence            542      2578999999999999999985532110                           0123566778889999


Q ss_pred             ceeEEEc
Q 018405          339 GVNYEYG  345 (356)
Q Consensus       339 ~~~~~~~  345 (356)
                      +.++.+.
T Consensus       206 ~~~~~~~  212 (249)
T 3g89_A          206 LGEVLAL  212 (249)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9887765

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.22  E-value=7.8e-11  Score=104.36  Aligned_cols=150  Identities=13%  Similarity=0.179  Sum_probs=95.9

Q ss_pred             HHHHHHHhcCCC-CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhC-CCCCCceEEE-ccCCC----CCCC-
Q 018405          181 MEKVLESYKGFE-HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNA-PSYLGIEHVG-GDFFE----SVPE-  251 (356)
Q Consensus       181 ~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~~~~v~~~~-~D~~~----~~~~-  251 (356)
                      +..+++.+. +. +..+|||||||||.++..+++. +..+++++|. +.+++.+ +..+++.... .|+..    ..|. 
T Consensus        73 l~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~  150 (291)
T 3hp7_A           73 LEKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEG  150 (291)
T ss_dssp             HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTC
T ss_pred             HHHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCC
Confidence            345566665 44 4579999999999999988886 4458999996 7666653 3334554332 23322    1333 


Q ss_pred             -CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE-ecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018405          252 -ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV-NVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYS  329 (356)
Q Consensus       252 -~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~  329 (356)
                       .|+|++..++|++     ..+|++++++|+|||+++++ .+-.+...  ..........+..       ...++.+++.
T Consensus       151 ~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~--~~~~~~G~vrd~~-------~~~~~~~~v~  216 (291)
T 3hp7_A          151 LPSFASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGR--EQIGKNGIVRESS-------IHEKVLETVT  216 (291)
T ss_dssp             CCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCG--GGCC-CCCCCCHH-------HHHHHHHHHH
T ss_pred             CCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccCh--hhcCCCCccCCHH-------HHHHHHHHHH
Confidence             4999998888754     78999999999999999886 11111100  0000000000100       1123678999


Q ss_pred             HHHHHcCCcceeEEEcc
Q 018405          330 ELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       330 ~ll~~aGf~~~~~~~~~  346 (356)
                      ++++++||++..+...+
T Consensus       217 ~~~~~~Gf~v~~~~~sp  233 (291)
T 3hp7_A          217 AFAVDYGFSVKGLDFSP  233 (291)
T ss_dssp             HHHHHTTEEEEEEEECS
T ss_pred             HHHHHCCCEEEEEEECC
Confidence            99999999999887764

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.22  E-value=3.5e-11  Score=105.24  Aligned_cols=109  Identities=19%  Similarity=0.170  Sum_probs=83.7

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHh--CCCCeEEEccc-hHHHHhCCCC---C-------C------------
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISK--YPRIKGINYDL-PYVIKNAPSY---L-------G------------  237 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~---~-------~------------  237 (356)
                      .+++.+. ..+..+|||+|||+|.++..+++.  .+..+++++|+ +.+++.|+.+   .       +            
T Consensus        42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (250)
T 1o9g_A           42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG  120 (250)
T ss_dssp             HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence            3444333 235689999999999999999998  77889999996 8888777632   2       2            


Q ss_pred             -------------ce-------------EEEccCCCCC------CC-C-cEEEecccccCCCh-------HHHHHHHHHH
Q 018405          238 -------------IE-------------HVGGDFFESV------PE-A-DTILMKWVLSSFDD-------EQSLKLLKNC  276 (356)
Q Consensus       238 -------------v~-------------~~~~D~~~~~------~~-~-D~i~~~~vlh~~~~-------~~~~~~L~~~  276 (356)
                                   ++             ++.+|++++.      +. . |+|++...+++..+       +....+++++
T Consensus       121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~  200 (250)
T 1o9g_A          121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL  200 (250)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence                         66             9999998843      33 3 99999877665432       5677999999


Q ss_pred             HHhCCCCCEEEEEecc
Q 018405          277 YKALPDGGKLLNVNVT  292 (356)
Q Consensus       277 ~~~L~pgG~lii~e~~  292 (356)
                      +++|+|||+++++...
T Consensus       201 ~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          201 ASALPAHAVIAVTDRS  216 (250)
T ss_dssp             HHHSCTTCEEEEEESS
T ss_pred             HHhcCCCcEEEEeCcc
Confidence            9999999999996543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.21  E-value=4.5e-11  Score=98.23  Aligned_cols=107  Identities=19%  Similarity=0.279  Sum_probs=83.8

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccchHHHHhCCCCCCceEEEccCCC-C--------CCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDLPYVIKNAPSYLGIEHVGGDFFE-S--------VPE  251 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~--------~~~  251 (356)
                      ..+++.+....+..+|||+|||+|.++..+++.+ |+.+++++|...+++    .++++++.+|+.+ +        .+.
T Consensus        11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T 1ej0_A           11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCC
Confidence            3455555545677899999999999999999985 778999999744322    2689999999988 4        554


Q ss_pred             C--cEEEecccccCCChHH---------HHHHHHHHHHhCCCCCEEEEEecc
Q 018405          252 A--DTILMKWVLSSFDDEQ---------SLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       252 ~--D~i~~~~vlh~~~~~~---------~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      .  |+|++..++|+..+..         ...+++++.+.|+|||++++....
T Consensus        87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  138 (180)
T 1ej0_A           87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ  138 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            3  9999999888765431         168999999999999999986653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.21  E-value=2.2e-11  Score=103.48  Aligned_cols=100  Identities=13%  Similarity=0.150  Sum_probs=80.8

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCC-CC-C
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESV-PE-A  252 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~-~~-~  252 (356)
                      ..+++.+. ..+..+|||||||+|.++..+++.  ..+++++|. +.+++.++++      ++++++.+|..+.. +. .
T Consensus        67 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  143 (210)
T 3lbf_A           67 ARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP  143 (210)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence            44555565 678899999999999999999998  578999996 8777776542      57999999998733 22 3


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                       |+|++..++|++++        .+.+.|+|||++++.-..
T Consensus       144 ~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          144 FDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred             ccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence             99999999999975        478999999999996554

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.21  E-value=7e-11  Score=100.76  Aligned_cols=117  Identities=12%  Similarity=0.047  Sum_probs=94.5

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCC---CCcEEEeccc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVP---EADTILMKWV  260 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~---~~D~i~~~~v  260 (356)
                      ++..+|+|||||+|.++..+++..|..+++++|. +..++.|+++       ++|++..+|.+++.+   ..|+|++..+
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~   93 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM   93 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence            3668999999999999999999999989999996 8887777653       479999999988554   2499988766


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcce
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV  340 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~  340 (356)
                      .-    +-...+|..+.+.|+|+|++++.-.                               -..+..+++|.+.||.++
T Consensus        94 Gg----~~i~~Il~~~~~~L~~~~~lVlq~~-------------------------------~~~~~vr~~L~~~Gf~i~  138 (225)
T 3kr9_A           94 GG----RLIARILEEGLGKLANVERLILQPN-------------------------------NREDDLRIWLQDHGFQIV  138 (225)
T ss_dssp             CH----HHHHHHHHHTGGGCTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEE
T ss_pred             Ch----HHHHHHHHHHHHHhCCCCEEEEECC-------------------------------CCHHHHHHHHHHCCCEEE
Confidence            33    4478999999999999999888211                               125678899999999988


Q ss_pred             eEE
Q 018405          341 NYE  343 (356)
Q Consensus       341 ~~~  343 (356)
                      +-.
T Consensus       139 ~e~  141 (225)
T 3kr9_A          139 AES  141 (225)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.20  E-value=1.9e-11  Score=105.64  Aligned_cols=143  Identities=15%  Similarity=0.154  Sum_probs=88.1

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CC--------ceEEE-ccCCCCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LG--------IEHVG-GDFFESV  249 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~--------v~~~~-~D~~~~~  249 (356)
                      +...++.+....+..+|||||||+|.++..+++. ...+++++|. +.+++.+.+. ++        +.+.. .|+..+.
T Consensus        25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (232)
T 3opn_A           25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR  103 (232)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC
T ss_pred             HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC
Confidence            3455555652234569999999999999999987 3348999996 6666654332 23        22222 2222211


Q ss_pred             CCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCC-------cc
Q 018405          250 PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHG-------RE  322 (356)
Q Consensus       250 ~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  322 (356)
                        .|.+.+..++.++     ..+|++++++|+|||++++..  .+.         +.....  ..  ...|       ..
T Consensus       104 --~d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~---------~e~~~~--~~--~~~G~~~d~~~~~  161 (232)
T 3opn_A          104 --PSFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQ---------FEAGRE--QV--GKNGIIRDPKVHQ  161 (232)
T ss_dssp             --CSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHH---------HHSCHH--HH--C-CCCCCCHHHHH
T ss_pred             --CCEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Ccc---------cccCHH--Hh--CcCCeecCcchhH
Confidence              1444444444443     679999999999999999852  110         000000  00  0011       12


Q ss_pred             CCHHHHHHHHHHcCCcceeEEEcc
Q 018405          323 RTKQEYSELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       323 ~t~~e~~~ll~~aGf~~~~~~~~~  346 (356)
                      .+.+++.++++++||++..+...+
T Consensus       162 ~~~~~l~~~l~~aGf~v~~~~~~p  185 (232)
T 3opn_A          162 MTIEKVLKTATQLGFSVKGLTFSP  185 (232)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEECS
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEcc
Confidence            367899999999999999887653

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.20  E-value=4.9e-11  Score=109.08  Aligned_cols=101  Identities=22%  Similarity=0.232  Sum_probs=78.1

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCCC-C-
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVPE-A-  252 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~-~-  252 (356)
                      .+.+.+. ..+..+|||||||+|.++..+++. +..+++++|...+++.+++.       ++++++.+|+.+ +.+. . 
T Consensus        55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  132 (340)
T 2fyt_A           55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV  132 (340)
T ss_dssp             HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred             HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence            3444343 567789999999999999998886 45689999974477666542       689999999988 6663 3 


Q ss_pred             cEEEeccc---ccCCChHHHHHHHHHHHHhCCCCCEEE
Q 018405          253 DTILMKWV---LSSFDDEQSLKLLKNCYKALPDGGKLL  287 (356)
Q Consensus       253 D~i~~~~v---lh~~~~~~~~~~L~~~~~~L~pgG~li  287 (356)
                      |+|++..+   +++.  .....+|++++++|+|||+++
T Consensus       133 D~Ivs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          133 DVIISEWMGYFLLFE--SMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EEEEECCCBTTBTTT--CHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEcCchhhccCH--HHHHHHHHHHHhhcCCCcEEE
Confidence            99998764   4443  347789999999999999987

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.20  E-value=1.4e-11  Score=117.54  Aligned_cols=106  Identities=21%  Similarity=0.156  Sum_probs=86.4

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCCCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVPEA  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~  252 (356)
                      ...+++.+. ..+..+|||||||+|.++..+++ .+..+++++|...+++.|++.       ++++++.+|+.+ +.++.
T Consensus       147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~  224 (480)
T 3b3j_A          147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ  224 (480)
T ss_dssp             HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred             HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence            445566555 45678999999999999998877 577899999975476665432       679999999998 66655


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                       |+|++..++|++.+++....+.+++++|+|||++++
T Consensus       225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence             999998888988877788899999999999999985

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.19  E-value=2.7e-11  Score=107.63  Aligned_cols=103  Identities=20%  Similarity=0.281  Sum_probs=83.1

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE  251 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~  251 (356)
                      ...++..++ +.+..+|||+|||+|.++..+++. .|..+++++|. +.+++.++++       ++++++.+|+.+..++
T Consensus       101 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  179 (277)
T 1o54_A          101 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE  179 (277)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred             HHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence            345666665 778889999999999999999998 67899999996 8777776543       4789999998875554


Q ss_pred             -C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          252 -A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       252 -~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                       . |+|++     +.++  ...+|+++.++|+|||++++.++
T Consensus       180 ~~~D~V~~-----~~~~--~~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          180 KDVDALFL-----DVPD--PWNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             CSEEEEEE-----CCSC--GGGTHHHHHHHEEEEEEEEEEES
T ss_pred             CccCEEEE-----CCcC--HHHHHHHHHHHcCCCCEEEEEeC
Confidence             3 99987     3433  46899999999999999999764

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.19  E-value=3.1e-11  Score=102.92  Aligned_cols=101  Identities=18%  Similarity=0.140  Sum_probs=82.0

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC--C
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP--E  251 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~--~  251 (356)
                      ..+++.+. ..+..+|||||||+|.++..+++.. |+.+++++|. +.+++.++++      ++++++.+|+..+.+  .
T Consensus        67 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  145 (215)
T 2yxe_A           67 GMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA  145 (215)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred             HHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence            45555555 6678899999999999999999987 6689999996 7777777543      569999999866444  2


Q ss_pred             C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          252 A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       252 ~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      . |+|++..++|++++        ++.+.|+|||++++...
T Consensus       146 ~fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          146 PYDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             CEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred             CeeEEEECCchHHHHH--------HHHHHcCCCcEEEEEEC
Confidence            3 99999999999863        78899999999999754

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.19  E-value=2.6e-11  Score=104.05  Aligned_cols=99  Identities=13%  Similarity=0.079  Sum_probs=78.5

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC--------CCCc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV--------PEAD  253 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~--------~~~D  253 (356)
                      ..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++       ++++++.+|..+..        ...|
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            34678999999999999999999998 789999996 8777766532       46999999986521        1239


Q ss_pred             EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                      +|++....     +....+++++.++|+|||.+++.+...+
T Consensus       136 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~  171 (223)
T 3duw_A          136 FIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVRE  171 (223)
T ss_dssp             EEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred             EEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            99886542     3467999999999999998888666543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.19  E-value=1.6e-11  Score=105.51  Aligned_cols=134  Identities=13%  Similarity=0.077  Sum_probs=100.9

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEEEecccccC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTILMKWVLSS  263 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~  263 (356)
                      ..+.+|||||||+|.++..+....|..+++++|. +.+++.++.+     .+.++...|+.. +.+.. |++++.-++|+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~  210 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC  210 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence            3578999999999999999999999999999996 8888777653     457888999998 43433 99999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE  343 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  343 (356)
                      +.++.....+ ++.++|+|+|.++..+.-.=..+.        ..++           ..-.+.|.+.+.+.|..+.++.
T Consensus       211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs--------~gm~-----------~~Y~~~~e~~~~~~g~~~~~~~  270 (281)
T 3lcv_B          211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS--------KGMF-----------QNYSQSFESQARERSCRIQRLE  270 (281)
T ss_dssp             HHHHSTTHHH-HHHHHSSCSEEEEEEECC---------------CHH-----------HHHHHHHHHHHHHHTCCEEEEE
T ss_pred             hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC--------cchh-----------hHHHHHHHHHHHhcCCceeeee
Confidence            9877666777 899999999998887752111110        0111           1125789999999998655544


Q ss_pred             Ec
Q 018405          344 YG  345 (356)
Q Consensus       344 ~~  345 (356)
                      .-
T Consensus       271 ~~  272 (281)
T 3lcv_B          271 IG  272 (281)
T ss_dssp             ET
T ss_pred             ec
Confidence            43

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.18  E-value=9.5e-11  Score=97.92  Aligned_cols=100  Identities=12%  Similarity=-0.044  Sum_probs=80.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--C-CC-CcEEEecc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--V-PE-ADTILMKW  259 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~-~~-~D~i~~~~  259 (356)
                      .+..+|||+|||+|.++..+++. +..+++++|. +.+++.++++      ++++++.+|+.+ .  . ++ .|+|++..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence            35689999999999999987774 5568999996 8888877653      579999999876 2  2 22 39999988


Q ss_pred             cccCCChHHHHHHHHHHHH--hCCCCCEEEEEeccc
Q 018405          260 VLSSFDDEQSLKLLKNCYK--ALPDGGKLLNVNVTI  293 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~--~L~pgG~lii~e~~~  293 (356)
                      .+|+. .++..++++.+.+  +|+|||++++.....
T Consensus       122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            86653 3568899999999  999999999976544

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.18  E-value=4.6e-11  Score=104.40  Aligned_cols=98  Identities=13%  Similarity=0.138  Sum_probs=78.7

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC---CCC---CCcEE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE---SVP---EADTI  255 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~---~~D~i  255 (356)
                      ..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++       ++++++.+|+.+   ..+   ..|+|
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V  140 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI  140 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence            34678999999999999999999998 889999996 8777776543       479999999865   222   23999


Q ss_pred             EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          256 LMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       256 ~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      ++...     .+....+|+++.++|+|||++++.+...
T Consensus       141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~  173 (248)
T 3tfw_A          141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR  173 (248)
T ss_dssp             EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred             EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence            98542     3456789999999999999998866654

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.18  E-value=2e-11  Score=105.77  Aligned_cols=103  Identities=18%  Similarity=0.194  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCC
Q 018405          179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPE  251 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~  251 (356)
                      .....+++.+. ..+..+|||||||+|.++..+++..+ .+++++|. +.+++.++++      ++++++.+|+..+++.
T Consensus        78 ~~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~  155 (235)
T 1jg1_A           78 HMVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP  155 (235)
T ss_dssp             HHHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred             HHHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC
Confidence            34556666665 77888999999999999999999887 78999995 7777776542      4689999998545442


Q ss_pred             ---CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          252 ---ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       252 ---~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                         .|+|++..+++++++        ++.+.|+|||++++...
T Consensus       156 ~~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          156 KAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             GCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred             CCCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence               299999999999864        57889999999999654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.18  E-value=5e-11  Score=103.21  Aligned_cols=99  Identities=15%  Similarity=0.263  Sum_probs=73.8

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC------------CCCCceEEEccCCC--C--CCCC--
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP------------SYLGIEHVGGDFFE--S--VPEA--  252 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~D~~~--~--~~~~--  252 (356)
                      .+..+|||||||+|.++..+++.+|+..++++|. +.+++.|+            ...+++++.+|+.+  +  ++.+  
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            4567999999999999999999999999999996 77766442            23679999999886  3  4444  


Q ss_pred             cEEEecccccCCCh--HH----HHHHHHHHHHhCCCCCEEEEEe
Q 018405          253 DTILMKWVLSSFDD--EQ----SLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       253 D~i~~~~vlh~~~~--~~----~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      |.|++...-.+...  ..    ...+|+++.++|+|||.|++..
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t  168 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT  168 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence            98876543221110  00    1479999999999999999864

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.18  E-value=3.7e-11  Score=103.06  Aligned_cols=99  Identities=14%  Similarity=0.208  Sum_probs=78.8

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC---CCC-----C-Cc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE---SVP-----E-AD  253 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~-----~-~D  253 (356)
                      .+..+|||||||+|..+..+++.++ +.+++++|. +.+++.++++       ++++++.+|..+   ..+     . .|
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD  136 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  136 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence            3578999999999999999999875 789999996 8888877653       469999999744   222     2 39


Q ss_pred             EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      +|++....+++  .....+++.+ ++|+|||.+++.+...
T Consensus       137 ~V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          137 MVFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             EEEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             EEEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence            99998888776  3356788888 9999999998855543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.17  E-value=1.3e-10  Score=99.28  Aligned_cols=129  Identities=12%  Similarity=-0.004  Sum_probs=99.7

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC-CC--CCcEEEeccc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES-VP--EADTILMKWV  260 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~-~~--~~D~i~~~~v  260 (356)
                      ++..+|+|||||+|.++..+++..|..+++++|. +..++.|+++       ++|++..+|.++. .+  ..|+|++.++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM   99 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence            4668999999999999999999988889999996 8888777643       5799999999984 33  2499998777


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcce
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV  340 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~  340 (356)
                      .-    +-...+|....+.|+++|++++.-.                               ...+.+++++.+.||.++
T Consensus       100 Gg----~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------------~~~~~lr~~L~~~Gf~i~  144 (230)
T 3lec_A          100 GG----RLIADILNNDIDKLQHVKTLVLQPN-------------------------------NREDDLRKWLAANDFEIV  144 (230)
T ss_dssp             CH----HHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEE
T ss_pred             ch----HHHHHHHHHHHHHhCcCCEEEEECC-------------------------------CChHHHHHHHHHCCCEEE
Confidence            54    4478999999999999999888321                               126788999999999998


Q ss_pred             eEEEc--cC-ceeEEEEe
Q 018405          341 NYEYG--AC-NLYVMEFL  355 (356)
Q Consensus       341 ~~~~~--~~-~~~vi~~~  355 (356)
                      +-.-.  .+ .+.+|.+.
T Consensus       145 ~E~lv~e~~~~Yeii~~~  162 (230)
T 3lec_A          145 AEDILTENDKRYEILVVK  162 (230)
T ss_dssp             EEEEEEC--CEEEEEEEE
T ss_pred             EEEEEEECCEEEEEEEEE
Confidence            75432  23 34455543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.17  E-value=2.4e-11  Score=102.97  Aligned_cols=91  Identities=15%  Similarity=0.143  Sum_probs=75.0

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC-CC-cEEEecccccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP-EA-DTILMKWVLSS  263 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~-D~i~~~~vlh~  263 (356)
                      +..+|||||||+|..+..++..+|+.+++++|. +.+++.++..      ++++++.+|+.+..+ .. |+|++..+ + 
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~-  142 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A-  142 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S-
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C-
Confidence            367999999999999999999999999999996 7777766542      458999999988433 33 99997542 2 


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                          +...+++++++.|+|||++++.
T Consensus       143 ----~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          143 ----SLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             ----SHHHHHHHHTTSEEEEEEEEEE
T ss_pred             ----CHHHHHHHHHHhcCCCcEEEEE
Confidence                2579999999999999999995

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.17  E-value=8.6e-11  Score=104.46  Aligned_cols=120  Identities=17%  Similarity=0.160  Sum_probs=92.6

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVL  261 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vl  261 (356)
                      ++..+|||+|||+|.++..+++..+. +++++|. +.+++.++++       ++++++.+|+.+ ..+.. |+|++... 
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p-  201 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV-  201 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc-
Confidence            46789999999999999999998776 8999996 8887776542       458999999998 33333 99988533 


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405          262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVN  341 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~  341 (356)
                           .....+++++.++|+|||++++.+......                       ......+++.+.++++||+...
T Consensus       202 -----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          202 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred             -----hhHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence                 124688999999999999999987653210                       0013467889999999998766

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.16  E-value=1.9e-11  Score=105.81  Aligned_cols=98  Identities=19%  Similarity=0.248  Sum_probs=79.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCC----CC-cEEEe
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVP----EA-DTILM  257 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~----~~-D~i~~  257 (356)
                      ..+..+|||||||+|..+..+++.+|+.+++++|. +.+++.++++       ++++++.+|+.+..+    .. |+|++
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            34678999999999999999999889999999996 8887777542       489999999987332    33 99997


Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      ....     +....+++++.++|+|||++++-+...
T Consensus       149 ~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~  179 (232)
T 3ntv_A          149 DAAK-----AQSKKFFEIYTPLLKHQGLVITDNVLY  179 (232)
T ss_dssp             ETTS-----SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred             cCcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence            6432     336789999999999999998866554

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.14  E-value=4.1e-11  Score=110.06  Aligned_cols=96  Identities=20%  Similarity=0.205  Sum_probs=76.4

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCCCC--cEEEecccc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVPEA--DTILMKWVL  261 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~--D~i~~~~vl  261 (356)
                      .+..+|||||||+|.++..++++ +..+++++|..++++.|++.       ++++++.+|+.+ +.|..  |+|++..+.
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            46789999999999999999987 66689999975576666542       459999999998 66643  999997765


Q ss_pred             cCCC-hHHHHHHHHHHHHhCCCCCEEEE
Q 018405          262 SSFD-DEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       262 h~~~-~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      +++. .+....+++.+.++|+|||+++.
T Consensus       144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          144 YCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            5442 23478899999999999999874

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.14  E-value=3.1e-11  Score=110.55  Aligned_cols=104  Identities=13%  Similarity=0.208  Sum_probs=79.7

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCC------ccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCC-
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGG------LGATLNMIISK-YPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVP-  250 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~-  250 (356)
                      +..++..+.  .++.+|||||||      +|..+..++++ +|+.+++++|+ +.+.   ...++++++++|+.+ ++. 
T Consensus       206 Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~  280 (419)
T 3sso_A          206 YDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLD  280 (419)
T ss_dssp             HHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHH
T ss_pred             HHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhh
Confidence            344454443  356899999999      67667777765 69999999997 6553   234789999999988 544 


Q ss_pred             ------CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          251 ------EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       251 ------~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                            .. |+|++. ..|++  ++..+.|++++++|||||++++.|..
T Consensus       281 ~l~~~d~sFDlVisd-gsH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          281 RIARRYGPFDIVIDD-GSHIN--AHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             HHHHHHCCEEEEEEC-SCCCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             hhhcccCCccEEEEC-Ccccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence                  33 999986 45666  45789999999999999999998865

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.14  E-value=1.9e-10  Score=99.11  Aligned_cols=117  Identities=12%  Similarity=0.060  Sum_probs=94.2

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC-CC--CcEEEeccc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV-PE--ADTILMKWV  260 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-~~--~D~i~~~~v  260 (356)
                      ++..+|||||||+|.++..+++..|..+++++|. +..++.|+++       ++|++..+|.++.. +.  .|+|++.++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm   99 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM   99 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence            3668999999999999999999988889999996 8888777653       57999999999843 32  499988766


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcce
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV  340 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~  340 (356)
                      .-    +-...+|....+.|++++++++.-.                               -..+.++++|.+.||.++
T Consensus       100 Gg----~lI~~IL~~~~~~L~~~~~lIlq~~-------------------------------~~~~~lr~~L~~~Gf~i~  144 (244)
T 3gnl_A          100 GG----TLIRTILEEGAAKLAGVTKLILQPN-------------------------------IAAWQLREWSEQNNWLIT  144 (244)
T ss_dssp             CH----HHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHHHHHHTEEEE
T ss_pred             ch----HHHHHHHHHHHHHhCCCCEEEEEcC-------------------------------CChHHHHHHHHHCCCEEE
Confidence            54    4578999999999999999888321                               025688899999999986


Q ss_pred             eEE
Q 018405          341 NYE  343 (356)
Q Consensus       341 ~~~  343 (356)
                      +-.
T Consensus       145 ~E~  147 (244)
T 3gnl_A          145 SEA  147 (244)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.14  E-value=8.5e-11  Score=101.39  Aligned_cols=102  Identities=16%  Similarity=0.190  Sum_probs=81.8

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCCCCC--CC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFESVP--EA  252 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~~~~--~~  252 (356)
                      ....+++.+. ..+..+|||||||+|.++..+++..  .+++++|. +.+++.++++    .+++++.+|+.+..+  ..
T Consensus        58 ~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~  134 (231)
T 1vbf_A           58 LGIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP  134 (231)
T ss_dssp             HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred             HHHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCC
Confidence            3455666665 6778899999999999999999986  68999996 7777776543    279999999887333  23


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                       |+|++..++|++++        ++.+.|+|||++++....
T Consensus       135 fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          135 YDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             EEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred             ccEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence             99999999999864        588899999999998653

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.13  E-value=1.2e-10  Score=100.97  Aligned_cols=94  Identities=16%  Similarity=0.144  Sum_probs=75.9

Q ss_pred             CCceEEEEcCCccHHHHHHHHh----CCCCeEEEccc-hHHHHhCCC-CCCceEEEccCCCC----C-CC--CcEEEecc
Q 018405          193 HVKKLVDVGGGLGATLNMIISK----YPRIKGINYDL-PYVIKNAPS-YLGIEHVGGDFFES----V-PE--ADTILMKW  259 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~----~-~~--~D~i~~~~  259 (356)
                      +..+|||||||+|..+..+++.    .|+.+++++|. +.+++.++. .++|+++.+|..+.    . +.  .|+|++..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence            4579999999999999999987    68899999996 777777754 26899999998773    1 22  39998765


Q ss_pred             cccCCChHHHHHHHHHHHH-hCCCCCEEEEEec
Q 018405          260 VLSSFDDEQSLKLLKNCYK-ALPDGGKLLNVNV  291 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~-~L~pgG~lii~e~  291 (356)
                      . |.    +...+|+++.+ .|+|||++++.+.
T Consensus       161 ~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          161 A-HA----NTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             S-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             c-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            4 42    36789999997 9999999999664

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.12  E-value=7.7e-11  Score=106.83  Aligned_cols=103  Identities=16%  Similarity=0.240  Sum_probs=82.5

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCC-C-
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESV-P-  250 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~-~-  250 (356)
                      ...+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|. +.+++.++++      ++++++.+|+.+.. + 
T Consensus        64 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~  142 (317)
T 1dl5_A           64 MALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF  142 (317)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             HHHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccC
Confidence            345566665 67789999999999999999999887 478999996 7777776543      46999999998732 2 


Q ss_pred             CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          251 EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       251 ~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      .. |+|++..++|+++        +++.+.|+|||++++....
T Consensus       143 ~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          143 SPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             CCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred             CCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence            23 9999999999986        3678899999999997543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.12  E-value=1.8e-10  Score=101.77  Aligned_cols=93  Identities=15%  Similarity=0.244  Sum_probs=77.6

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--cEEEecccccCCCh
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDD  266 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~  266 (356)
                      .+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. +++.+..+|+.+ +++++  |+|++..+.+    
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~----  159 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC----  159 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChh----
Confidence            4678999999999999999999988899999996 8888777654 678999999887 65543  9999876532    


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          267 EQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       267 ~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                           .+++++++|+|||++++..+..
T Consensus       160 -----~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          160 -----KAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             -----CHHHHHHHEEEEEEEEEEEECT
T ss_pred             -----hHHHHHHhcCCCcEEEEEEcCH
Confidence                 4788999999999999987653

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.12  E-value=7.6e-11  Score=109.36  Aligned_cols=101  Identities=18%  Similarity=0.156  Sum_probs=79.5

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVL  261 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vl  261 (356)
                      ..+..+|||||||+|.++..++++. ..+++++|...+++.+++.       ++++++.+|+.+ +.++. |+|++..+.
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~  139 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG  139 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence            5677899999999999999999873 3489999965666655432       569999999988 66544 999997766


Q ss_pred             cCCCh-HHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          262 SSFDD-EQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       262 h~~~~-~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      |+... .....+++.+++.|+|||++++.+..
T Consensus       140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          140 YFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             TTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             hcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            66543 34778999999999999999876543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.11  E-value=2.1e-10  Score=106.25  Aligned_cols=96  Identities=15%  Similarity=0.124  Sum_probs=80.1

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCC-CC-cEEEecccccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVP-EA-DTILMKWVLSS  263 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~-~~-D~i~~~~vlh~  263 (356)
                      +..+|||+|||+|.++..+++.  +.+++++|. +.+++.++++     .+++++.+|+.+ ..+ .. |+|++...+|+
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV  310 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence            5679999999999999999987  568999996 8888777653     258999999998 444 23 99999999997


Q ss_pred             ---CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          264 ---FDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       264 ---~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                         ...+....+++++++.|+|||+++++.
T Consensus       311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          311 GGAVILDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             TCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence               334668899999999999999999964

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.11  E-value=9.8e-11  Score=103.04  Aligned_cols=100  Identities=15%  Similarity=0.232  Sum_probs=76.7

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCCC--------CCC
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFES--------VPE  251 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~--------~~~  251 (356)
                      ..+..+|||+|||+|.++..+++++|..+++++|+ +.+++.++++          ++++++.+|+.+.        ++.
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            55678999999999999999999999999999996 7777665432          2589999999874        233


Q ss_pred             -C-cEEEeccccc----------------CCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          252 -A-DTILMKWVLS----------------SFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       252 -~-D~i~~~~vlh----------------~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                       . |+|++.-..+                |........+++.+.++|+|||+++++-
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence             3 9999973322                2222336789999999999999999853

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.11  E-value=1e-10  Score=104.81  Aligned_cols=98  Identities=14%  Similarity=0.272  Sum_probs=77.9

Q ss_pred             CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC---CCC-CC-cEEEecccc
Q 018405          194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE---SVP-EA-DTILMKWVL  261 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~~-~~-D~i~~~~vl  261 (356)
                      +.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++      +|++++.+|..+   ..+ +. |+|++....
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            45999999999999999999999999999997 8888877642      589999999876   233 33 999986554


Q ss_pred             cCCChHH--HHHHHHHHHHhCCCCCEEEEEec
Q 018405          262 SSFDDEQ--SLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       262 h~~~~~~--~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      +......  ...++++++++|+|||.+++...
T Consensus       170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            4322222  26899999999999999988654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.11  E-value=5.8e-11  Score=102.68  Aligned_cols=97  Identities=15%  Similarity=0.198  Sum_probs=79.8

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC--C---CCC-cEEEe
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES--V---PEA-DTILM  257 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~--~---~~~-D~i~~  257 (356)
                      .+..+|||||||+|..+..+++.+|+.+++++|. +.+++.++++       ++++++.+|+.+.  .   +.. |+|++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            3568999999999999999999999999999996 7877776543       4799999998762  1   233 99999


Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      ....+     +...+|+++.++|+|||++++.+...
T Consensus       133 ~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~  163 (233)
T 2gpy_A          133 DAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF  163 (233)
T ss_dssp             EGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred             CCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence            77754     35789999999999999999976554

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.10  E-value=8e-11  Score=102.44  Aligned_cols=98  Identities=18%  Similarity=0.153  Sum_probs=77.9

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--CC------CCC-cE
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--SV------PEA-DT  254 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~------~~~-D~  254 (356)
                      ++.+|||||||+|..+..+++.+| +.+++++|. +.+++.++++       ++|+++.+|..+  +.      ++. |+
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~  139 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF  139 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence            568999999999999999999886 789999996 7666655432       589999999876  21      233 99


Q ss_pred             EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405          255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE  295 (356)
Q Consensus       255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~  295 (356)
                      |++...     .+....+|+++.++|+|||.+++.+.....
T Consensus       140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g  175 (242)
T 3r3h_A          140 IFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG  175 (242)
T ss_dssp             EEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred             EEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence            988654     244678999999999999999997776543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.09  E-value=3.3e-11  Score=103.56  Aligned_cols=98  Identities=19%  Similarity=0.100  Sum_probs=78.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC---CC-----CC-c
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES---VP-----EA-D  253 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~~-----~~-D  253 (356)
                      .+..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++       ++++++.+|..+.   .+     .. |
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            3568999999999999999999988 789999996 7777766542       4699999998652   11     33 9


Q ss_pred             EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                      +|++...     .+....+++++.++|+|||++++.+...+
T Consensus       143 ~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  178 (225)
T 3tr6_A          143 LIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR  178 (225)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred             EEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            9986443     24468899999999999999999776653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.08  E-value=3.8e-10  Score=94.48  Aligned_cols=105  Identities=18%  Similarity=0.309  Sum_probs=76.6

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCC----------
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESV----------  249 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~----------  249 (356)
                      .+..+.+.+.-+++..+|||+|||+|.++..++++  ..+++++|+...    ...++++++.+|+.+..          
T Consensus        12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~   85 (191)
T 3dou_A           12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALR   85 (191)
T ss_dssp             HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhh
Confidence            34566666764567899999999999999999987  778999997432    22368999999998731          


Q ss_pred             ----CCCcEEEecccccC---CC-h-----HHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          250 ----PEADTILMKWVLSS---FD-D-----EQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       250 ----~~~D~i~~~~vlh~---~~-~-----~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                          ...|+|++......   +. +     +.+..+|+.+.++|+|||++++..
T Consensus        86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~  139 (191)
T 3dou_A           86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ  139 (191)
T ss_dssp             HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence                22399998532211   11 1     224678999999999999999744

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.07  E-value=3.8e-10  Score=94.61  Aligned_cols=105  Identities=22%  Similarity=0.203  Sum_probs=76.8

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC---------CeEEEccchHHHHhCCCCCCceEE-EccCCC-C---
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR---------IKGINYDLPYVIKNAPSYLGIEHV-GGDFFE-S---  248 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~v~~~-~~D~~~-~---  248 (356)
                      .+.+.+..+.+..+|||||||+|.++..+++.++.         .+++++|...+    ...++++++ .+|+.. +   
T Consensus        12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred             HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence            34444553567789999999999999999999865         78999997432    123578999 999876 2   


Q ss_pred             -----CCC-C-cEEEecccccC----CChHH-----HHHHHHHHHHhCCCCCEEEEEec
Q 018405          249 -----VPE-A-DTILMKWVLSS----FDDEQ-----SLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       249 -----~~~-~-D~i~~~~vlh~----~~~~~-----~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                           .++ . |+|++...+|.    ..+..     ...++++++++|+|||++++...
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence                 222 3 99998654443    12211     15889999999999999998754

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.07  E-value=1e-10  Score=102.10  Aligned_cols=94  Identities=16%  Similarity=0.317  Sum_probs=72.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC--------------CCCCceEEEccCCCC----CCC
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP--------------SYLGIEHVGGDFFES----VPE  251 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~~v~~~~~D~~~~----~~~  251 (356)
                      .++..+|||||||+|.++..+++.+|+..++++|. +.+++.++              ..++++++.+|+.+.    ++.
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence            34678999999999999999999999999999996 77766552              225799999998862    333


Q ss_pred             C--cEEEecccccCCChHHH-----------HHHHHHHHHhCCCCCEEEEE
Q 018405          252 A--DTILMKWVLSSFDDEQS-----------LKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       252 ~--D~i~~~~vlh~~~~~~~-----------~~~L~~~~~~L~pgG~lii~  289 (356)
                      .  |.|++.     ++++..           ..+++++.++|+|||+|++.
T Consensus       127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            3  666542     233211           48999999999999999995

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.07  E-value=3.6e-10  Score=100.68  Aligned_cols=94  Identities=20%  Similarity=0.209  Sum_probs=74.9

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC-CCC---cEEEec--
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV-PEA---DTILMK--  258 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-~~~---D~i~~~--  258 (356)
                      +..+|||+|||+|.++..+++. |+.+++++|. +.+++.++.+       ++++++.+|++++. ...   |+|+++  
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP  201 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP  201 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence            5579999999999999999999 9999999996 8888777643       35999999998843 245   999996  


Q ss_pred             ----------ccccCCChH------HHHHHHHHHH-HhCCCCCEEEE
Q 018405          259 ----------WVLSSFDDE------QSLKLLKNCY-KALPDGGKLLN  288 (356)
Q Consensus       259 ----------~vlh~~~~~------~~~~~L~~~~-~~L~pgG~lii  288 (356)
                                .+. |.+..      +...+++++. +.++|||++++
T Consensus       202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~  247 (284)
T 1nv8_A          202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM  247 (284)
T ss_dssp             CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred             CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence                      333 33321      1237899999 99999999997

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.07  E-value=2.1e-10  Score=104.45  Aligned_cols=97  Identities=21%  Similarity=0.251  Sum_probs=75.0

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCC-CC-cEEEeccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVP-EA-DTILMKWV  260 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~~-D~i~~~~v  260 (356)
                      ..+..+|||||||+|.++..+++. +..+++++|...+++.+++.       ++++++.+|+.+ +.| +. |+|++..+
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  114 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM  114 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred             hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence            345689999999999999988876 45689999975566655432       579999999988 666 33 99999865


Q ss_pred             ccCCC-hHHHHHHHHHHHHhCCCCCEEEE
Q 018405          261 LSSFD-DEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       261 lh~~~-~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      .+++. .+....+|+.+.++|+|||+++.
T Consensus       115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          115 GYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            55432 23467899999999999999874

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.06  E-value=1.4e-10  Score=99.47  Aligned_cols=95  Identities=9%  Similarity=0.087  Sum_probs=75.1

Q ss_pred             CceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC--------CCceEEEccCCC---CC-CCC-cEEEec
Q 018405          194 VKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFE---SV-PEA-DTILMK  258 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~---~~-~~~-D~i~~~  258 (356)
                      ..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++        ++++++.+|..+   .. ++. |+|++.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d  136 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ  136 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence            34999999999999999999875 789999996 8777776542        479999999866   23 233 999886


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      ...     .+...+++++.++|+|||.+++.+...
T Consensus       137 ~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~  166 (221)
T 3dr5_A          137 VSP-----MDLKALVDAAWPLLRRGGALVLADALL  166 (221)
T ss_dssp             CCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred             CcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            443     335779999999999999999965544

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.05  E-value=1e-09  Score=97.59  Aligned_cols=96  Identities=17%  Similarity=0.142  Sum_probs=72.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc--hHHHHhCCCC----------------CCceEEEccCCCC---C
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL--PYVIKNAPSY----------------LGIEHVGGDFFES---V  249 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~----------------~~v~~~~~D~~~~---~  249 (356)
                      ..+..+|||||||+|.++..+++.. ..+++++|.  +.+++.++.+                +++++...|..+.   .
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            3466799999999999999888753 348999997  5665554321                2677886664431   1


Q ss_pred             -----CCC-cEEEecccccCCChHHHHHHHHHHHHhCC---C--CCEEEEE
Q 018405          250 -----PEA-DTILMKWVLSSFDDEQSLKLLKNCYKALP---D--GGKLLNV  289 (356)
Q Consensus       250 -----~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~---p--gG~lii~  289 (356)
                           +.. |+|++..++||.  ++...+++.+.++|+   |  ||+++++
T Consensus       156 ~~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          156 QRCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             HHHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             HhhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence                 223 999999999986  448899999999999   9  9998774

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.05  E-value=1.3e-10  Score=95.90  Aligned_cols=106  Identities=7%  Similarity=0.003  Sum_probs=78.8

Q ss_pred             HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC---CCCC
Q 018405          184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES---VPEA  252 (356)
Q Consensus       184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~~~~  252 (356)
                      +++.+....+..+|||+|||+|.++..+++. +..+++++|. +.+++.++++       ++++++.+|+.+.   .+..
T Consensus        22 ~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (177)
T 2esr_A           22 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGR  100 (177)
T ss_dssp             HHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSC
T ss_pred             HHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCC
Confidence            3333432346789999999999999999887 6678999996 8887777542       3689999998762   2233


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHH--HhCCCCCEEEEEeccc
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCY--KALPDGGKLLNVNVTI  293 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~--~~L~pgG~lii~e~~~  293 (356)
                       |+|++...+|.   ......++.+.  ++|+|||++++.....
T Consensus       101 fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          101 FDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             EEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             CCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence             99999876542   33567777776  8999999999976544

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.04  E-value=1.1e-10  Score=99.29  Aligned_cols=97  Identities=18%  Similarity=0.160  Sum_probs=77.3

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--CCCC-CcEEEeccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--SVPE-ADTILMKWV  260 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~~~-~D~i~~~~v  260 (356)
                      +..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++       ++++++.+|..+  +... .|+|++...
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~  135 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD  135 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence            567999999999999999999988 789999996 8887777643       468999999865  2222 499987632


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                         .  .+...++++++++|+|||.+++.+....
T Consensus       136 ---~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~  164 (210)
T 3c3p_A          136 ---V--FNGADVLERMNRCLAKNALLIAVNALRR  164 (210)
T ss_dssp             ---T--SCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred             ---h--hhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence               1  3468999999999999999998665543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.03  E-value=2.3e-10  Score=95.12  Aligned_cols=107  Identities=12%  Similarity=0.019  Sum_probs=78.3

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC-----
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV-----  249 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-----  249 (356)
                      .+++.+....+..+|||+|||+|.++..+++ .+..+++++|. +.+++.++++       ++++++.+|+.+..     
T Consensus        34 ~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  112 (187)
T 2fhp_A           34 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE  112 (187)
T ss_dssp             HHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence            3444443244678999999999999998887 45678999996 8888777643       46899999987621     


Q ss_pred             -CCC-cEEEecccccCCChHHHHHHHHHH--HHhCCCCCEEEEEeccc
Q 018405          250 -PEA-DTILMKWVLSSFDDEQSLKLLKNC--YKALPDGGKLLNVNVTI  293 (356)
Q Consensus       250 -~~~-D~i~~~~vlh~~~~~~~~~~L~~~--~~~L~pgG~lii~e~~~  293 (356)
                       +.. |+|++...++...   ....++.+  .++|+|||++++.....
T Consensus       113 ~~~~fD~i~~~~~~~~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~  157 (187)
T 2fhp_A          113 EKLQFDLVLLDPPYAKQE---IVSQLEKMLERQLLTNEAVIVCETDKT  157 (187)
T ss_dssp             TTCCEEEEEECCCGGGCC---HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             cCCCCCEEEECCCCCchh---HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence             233 9999987765333   34555666  88899999999865544

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.02  E-value=7.2e-10  Score=100.24  Aligned_cols=107  Identities=12%  Similarity=0.156  Sum_probs=79.2

Q ss_pred             HHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CC-CCC-cE
Q 018405          186 ESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SV-PEA-DT  254 (356)
Q Consensus       186 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~-~~~-D~  254 (356)
                      ..+. ..+..+|||+|||+|..+..+++..+ ..+++++|. +..++.++++      .+++++.+|+.+ +. +.. |+
T Consensus       112 ~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~  190 (315)
T 1ixk_A          112 VALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK  190 (315)
T ss_dssp             HHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred             HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCE
Confidence            3444 66788999999999999999999875 478999996 7777766543      478999999887 32 333 99


Q ss_pred             EEec------ccccCCC-------hHH-------HHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          255 ILMK------WVLSSFD-------DEQ-------SLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       255 i~~~------~vlh~~~-------~~~-------~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      |++.      .++++.+       .++       ..++|+++.+.|+|||++++.....
T Consensus       191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            9973      2344322       221       2589999999999999999976544

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.02  E-value=1.7e-10  Score=100.76  Aligned_cols=97  Identities=16%  Similarity=0.098  Sum_probs=77.1

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--C-C------CCC-
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--S-V------PEA-  252 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~------~~~-  252 (356)
                      .+..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++       ++++++.+|..+  + .      +.. 
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            3568999999999999999999988 789999996 7777766542       478999999865  2 1      233 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      |+|++....     .....+++++.++|+|||.+++.+...
T Consensus       158 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~  193 (247)
T 1sui_A          158 DFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_dssp             SEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred             EEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence            999986432     346889999999999999998866544

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.01  E-value=1.8e-10  Score=100.07  Aligned_cols=98  Identities=21%  Similarity=0.174  Sum_probs=77.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC---C---------
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES---V---------  249 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~---------  249 (356)
                      ..+..+|||||||+|..+..+++.+| ..+++++|. +.+++.++++       ++++++.+|..+.   .         
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence            34678999999999999999999987 689999996 8777776543       3589999997651   1         


Q ss_pred             ------C-CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          250 ------P-EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       250 ------~-~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                            + .. |+|++....     +....+|+++.++|+|||++++.+...
T Consensus       138 ~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~  184 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW  184 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             cccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence                  1 33 999987543     346789999999999999999976544

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.01  E-value=3.2e-10  Score=97.57  Aligned_cols=102  Identities=17%  Similarity=0.187  Sum_probs=79.4

Q ss_pred             HHHHHHhc-CCCCCceEEEEcCCccHHHHHHHHhCC------CCeEEEccc-hHHHHhCCC-----------CCCceEEE
Q 018405          182 EKVLESYK-GFEHVKKLVDVGGGLGATLNMIISKYP------RIKGINYDL-PYVIKNAPS-----------YLGIEHVG  242 (356)
Q Consensus       182 ~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~  242 (356)
                      ..+++.+. .+.+..+|||||||+|.++..+++..+      ..+++++|. +.+++.+++           .++++++.
T Consensus        72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  151 (227)
T 1r18_A           72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  151 (227)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence            34444442 255678999999999999999998765      368999996 777777654           24799999


Q ss_pred             ccCCCCCCC-C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          243 GDFFESVPE-A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       243 ~D~~~~~~~-~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      +|..++++. +  |+|++...+|+++        +++.+.|+|||++++.-.
T Consensus       152 ~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          152 GDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG  195 (227)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred             CCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence            998875543 3  9999999999875        468899999999998643

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.00  E-value=6.3e-10  Score=94.72  Aligned_cols=95  Identities=15%  Similarity=0.110  Sum_probs=78.8

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEEEecccccC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTILMKWVLSS  263 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~  263 (356)
                      .++.+|||||||+|.++..+.   |..+++++|+ +.+++.++..     .+..+...|... +.+.. |+|++.-++|+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~  180 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL  180 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence            468899999999999999877   8999999997 8888777653     457788999998 55544 99999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +.+++....+ ++.+.|+|+|.++-..
T Consensus       181 LE~q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          181 LEREQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             HHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             hhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence            9777666666 8999999998777766

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.00  E-value=9.2e-10  Score=101.27  Aligned_cols=112  Identities=19%  Similarity=0.085  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C
Q 018405          178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S  248 (356)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~  248 (356)
                      ...+..++.... +.+..+|||+|||+|.++..++... |+.+++++|. +.+++.|+.+      ++++++.+|+.+ +
T Consensus       189 ~~la~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~  267 (354)
T 3tma_A          189 PVLAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLP  267 (354)
T ss_dssp             HHHHHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGG
T ss_pred             HHHHHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCc
Confidence            334555666555 7788999999999999999999987 8899999996 8888877653      379999999988 4


Q ss_pred             CC-CC-cEEEecccccCCCh--H----HHHHHHHHHHHhCCCCCEEEEEe
Q 018405          249 VP-EA-DTILMKWVLSSFDD--E----QSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       249 ~~-~~-D~i~~~~vlh~~~~--~----~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      .+ .. |+|++.-..+....  .    ....+++++++.|+|||+++++.
T Consensus       268 ~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t  317 (354)
T 3tma_A          268 RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT  317 (354)
T ss_dssp             GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            43 23 99999544332111  1    13689999999999999999954

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.00  E-value=5.4e-10  Score=99.28  Aligned_cols=105  Identities=17%  Similarity=0.221  Sum_probs=82.4

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCC---------CCCceEEEccCCC-
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPS---------YLGIEHVGGDFFE-  247 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-  247 (356)
                      ....++..++ ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++         .++++++.+|+.+ 
T Consensus        87 ~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~  165 (280)
T 1i9g_A           87 DAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS  165 (280)
T ss_dssp             HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred             HHHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence            3445666666 778889999999999999999986 57889999996 777766643         2479999999987 


Q ss_pred             CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          248 SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       248 ~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      +.+..  |+|++     +.++  ...+|+++.++|+|||++++..+.
T Consensus       166 ~~~~~~~D~v~~-----~~~~--~~~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          166 ELPDGSVDRAVL-----DMLA--PWEVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             CCCTTCEEEEEE-----ESSC--GGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             CCCCCceeEEEE-----CCcC--HHHHHHHHHHhCCCCCEEEEEeCC
Confidence            45433  99988     2333  358899999999999999997753

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.00  E-value=1.7e-09  Score=94.15  Aligned_cols=101  Identities=17%  Similarity=0.231  Sum_probs=80.1

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC-CC-
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV-PE-  251 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-~~-  251 (356)
                      ..++..+. ..+..+|||+|||+|.++..+++.  ..+++++|. +.+++.+++.       +++++..+|+.+.. +. 
T Consensus        81 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  157 (248)
T 2yvl_A           81 FYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG  157 (248)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence            45555555 677889999999999999999998  678999996 7777766542       57899999998854 43 


Q ss_pred             C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          252 A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       252 ~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      . |+|++     +.++  ...+++++.++|+|||++++..+.
T Consensus       158 ~~D~v~~-----~~~~--~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          158 IFHAAFV-----DVRE--PWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             CBSEEEE-----CSSC--GGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             cccEEEE-----CCcC--HHHHHHHHHHHcCCCCEEEEEeCC
Confidence            3 99987     2332  468899999999999999997753

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.99  E-value=8.4e-10  Score=97.06  Aligned_cols=106  Identities=16%  Similarity=0.050  Sum_probs=74.2

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC--C------CceEE--EccCCCCCCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY--L------GIEHV--GGDFFESVPE  251 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~D~~~~~~~  251 (356)
                      ..+.+... +.+..+|||||||+|.++..+++.   .+++++|+..++..++..  .      ++.++  .+|+.+-.+.
T Consensus        64 ~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~  139 (265)
T 2oxt_A           64 AWMEERGY-VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVE  139 (265)
T ss_dssp             HHHHHHTS-CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred             HHHHHcCC-CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCC
Confidence            44444422 567789999999999999998886   579999974453333221  2      68888  8999872233


Q ss_pred             -CcEEEecccccCCChHH-----HHHHHHHHHHhCCCCC--EEEEEecc
Q 018405          252 -ADTILMKWVLSSFDDEQ-----SLKLLKNCYKALPDGG--KLLNVNVT  292 (356)
Q Consensus       252 -~D~i~~~~vlh~~~~~~-----~~~~L~~~~~~L~pgG--~lii~e~~  292 (356)
                       .|+|++... ++.++..     ...+|+.++++|+|||  .+++-...
T Consensus       140 ~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          140 RTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             CCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence             399999766 4432211     1248999999999999  88885443

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.99  E-value=6.2e-10  Score=95.68  Aligned_cols=93  Identities=15%  Similarity=0.130  Sum_probs=75.7

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-----CCCeEEEccc-hHHHHhCCCC-----------CCceEEEccCCCCC----
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-----PRIKGINYDL-PYVIKNAPSY-----------LGIEHVGGDFFESV----  249 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~~~----  249 (356)
                      ..+..+|||||||+|.++..+++..     |..+++++|. +.+++.++++           ++++++.+|..+..    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            5677899999999999999999986     5679999996 7777766542           47999999988743    


Q ss_pred             -C-CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          250 -P-EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       250 -~-~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                       + .. |+|++...+|++.        +++.+.|+|||++++.-.
T Consensus       158 ~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          158 KELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEc
Confidence             2 22 9999999998764        578899999999999654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.97  E-value=2.4e-10  Score=93.49  Aligned_cols=95  Identities=14%  Similarity=0.009  Sum_probs=72.0

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----C-CceEEEccCCCCC------C-CCcEEEecc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----L-GIEHVGGDFFESV------P-EADTILMKW  259 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~D~~~~~------~-~~D~i~~~~  259 (356)
                      +..+|||+|||+|.++..+++..+.  ++++|. +.+++.++++    . +++++.+|+.+..      + ..|+|++..
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            5689999999999999999998765  999996 8888777653    2 7899999987621      1 239999988


Q ss_pred             cccCCChHHHHHHHHHHH--HhCCCCCEEEEEeccc
Q 018405          260 VLSSFDDEQSLKLLKNCY--KALPDGGKLLNVNVTI  293 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~--~~L~pgG~lii~e~~~  293 (356)
                      .+| -.   ...+++.+.  ++|+|||++++.....
T Consensus       119 ~~~-~~---~~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          119 PYA-MD---LAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             CTT-SC---TTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             CCc-hh---HHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence            776 22   234445554  9999999999866544

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.97  E-value=1.6e-09  Score=97.36  Aligned_cols=96  Identities=20%  Similarity=0.135  Sum_probs=68.1

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-----hHHHHhCC--CC--CCceEEEc-cCCC-CCCCCcEEEecc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-----PYVIKNAP--SY--LGIEHVGG-DFFE-SVPEADTILMKW  259 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~~--~~v~~~~~-D~~~-~~~~~D~i~~~~  259 (356)
                      +++..+|||||||+|.++..++++   .+++++|.     +..++...  ..  +++.++.+ |+.. +....|+|++..
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~  156 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI  156 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence            556789999999999999999987   36888886     33222221  11  56899999 8887 433349999966


Q ss_pred             ccc---CCChHH-HHHHHHHHHHhCCCCCEEEEE
Q 018405          260 VLS---SFDDEQ-SLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       260 vlh---~~~~~~-~~~~L~~~~~~L~pgG~lii~  289 (356)
                      .++   +..+.. ...+|+.++++|+|||.+++.
T Consensus       157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            553   222221 226899999999999988873

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.97  E-value=8.4e-10  Score=97.61  Aligned_cols=105  Identities=17%  Similarity=0.033  Sum_probs=73.4

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC--C------CceEE--EccCCC-CCC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY--L------GIEHV--GGDFFE-SVP  250 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~D~~~-~~~  250 (356)
                      ..+.+... +++..+|||+|||+|.++..+++.   .+++++|+..+...++..  .      ++.++  .+|+.+ +..
T Consensus        72 ~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~  147 (276)
T 2wa2_A           72 AWIDERGG-VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPF  147 (276)
T ss_dssp             HHHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCC
T ss_pred             HHHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCC
Confidence            34444422 567789999999999999999887   579999974453333221  2      68899  899887 422


Q ss_pred             CCcEEEecccccCCChHH-----HHHHHHHHHHhCCCCC--EEEEEec
Q 018405          251 EADTILMKWVLSSFDDEQ-----SLKLLKNCYKALPDGG--KLLNVNV  291 (356)
Q Consensus       251 ~~D~i~~~~vlh~~~~~~-----~~~~L~~~~~~L~pgG--~lii~e~  291 (356)
                      ..|+|++... ++.++..     ...+|+.+.++|+|||  .+++...
T Consensus       148 ~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~  194 (276)
T 2wa2_A          148 QADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL  194 (276)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence            2399999776 4432211     1248999999999999  8888443

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.97  E-value=1.5e-09  Score=93.21  Aligned_cols=94  Identities=20%  Similarity=0.147  Sum_probs=75.1

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCC-----------CCCceEEEccCCCCC-CC-C-cE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPS-----------YLGIEHVGGDFFESV-PE-A-DT  254 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~-~~-~-D~  254 (356)
                      ..+..+|||||||+|..+..+++.. |..+++++|. +.+++.+++           .++++++.+|..... +. . |+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            4567899999999999999999875 6679999996 777776643           247999999987632 22 3 99


Q ss_pred             EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      |++...++++.        +++.+.|+|||++++....
T Consensus       155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred             EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence            99999988764        4688999999999997543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.95  E-value=3.1e-10  Score=97.66  Aligned_cols=98  Identities=16%  Similarity=0.162  Sum_probs=77.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC---CC-----CC-
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES---VP-----EA-  252 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~~-----~~-  252 (356)
                      ..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++       ++++++.+|+.+.   .+     .. 
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            34678999999999999999999887 789999996 7777766542       5799999998652   11     33 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      |+|++...     ......+++++.++|+|||.+++.+...
T Consensus       147 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~  182 (229)
T 2avd_A          147 DVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW  182 (229)
T ss_dssp             EEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             cEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            99998543     2346789999999999999999977554

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.95  E-value=2.7e-10  Score=96.20  Aligned_cols=97  Identities=12%  Similarity=0.024  Sum_probs=74.6

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCC-CC----CC-CcEEEe
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFE-SV----PE-ADTILM  257 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~~----~~-~D~i~~  257 (356)
                      +..+|||+|||+|.++..++.+.. .+++++|. +.+++.++++        ++++++.+|+.+ ..    .. .|+|++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            457999999999999998777643 58999996 8888777642        478999999866 21    24 599999


Q ss_pred             cccccCCChHHHHHHHHHH--HHhCCCCCEEEEEeccc
Q 018405          258 KWVLSSFDDEQSLKLLKNC--YKALPDGGKLLNVNVTI  293 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~--~~~L~pgG~lii~e~~~  293 (356)
                      ...+| .  .....+++.+  .++|+|||.+++.....
T Consensus       132 ~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          132 DPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             CCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            87755 3  3467888888  56799999999866543

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.94  E-value=4.2e-10  Score=97.60  Aligned_cols=97  Identities=18%  Similarity=0.123  Sum_probs=76.8

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--C-C------CCC-
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--S-V------PEA-  252 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~------~~~-  252 (356)
                      .+..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++       ++++++.+|..+  + .      +.. 
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            3578999999999999999999987 789999996 7777766542       479999999865  2 1      233 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      |+|++...     ......+++++.++|+|||.+++.+...
T Consensus       149 D~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~~  184 (237)
T 3c3y_A          149 DFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTLW  184 (237)
T ss_dssp             EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred             CEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence            99987532     2457899999999999999998865543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.94  E-value=3e-10  Score=98.14  Aligned_cols=97  Identities=19%  Similarity=0.148  Sum_probs=77.0

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC-----CC---CC-cE
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES-----VP---EA-DT  254 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~-----~~---~~-D~  254 (356)
                      +..+|||||||+|..+..+++.+| +.+++++|. +..++.++++       ++++++.+|..+.     .+   .. |+
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~  151 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL  151 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence            567999999999999999999987 789999996 7777776542       4699999997541     11   33 99


Q ss_pred             EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                      |++...     .++...+++++.++|+|||++++.+....
T Consensus       152 V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  186 (232)
T 3cbg_A          152 IFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLWH  186 (232)
T ss_dssp             EEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred             EEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence            987654     24468899999999999999999776543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.94  E-value=2.3e-11  Score=105.70  Aligned_cols=133  Identities=17%  Similarity=0.119  Sum_probs=92.4

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCC-CcEEEeccccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPE-ADTILMKWVLS  262 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~-~D~i~~~~vlh  262 (356)
                      +..+|||+|||+|..+..+++..  .+++++|. +.+++.++.+       ++++++.+|+.+ +.+. .|+|++...+|
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG  155 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence            57899999999999999999864  78999996 8888777643       479999999987 4233 39999999999


Q ss_pred             CCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeE
Q 018405          263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNY  342 (356)
Q Consensus       263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~  342 (356)
                      +.++  ....+.+++++|+|||.+++........             .....  .  -.....+++..++...|.-.+..
T Consensus       156 ~~~~--~~~~~~~~~~~L~pgG~~i~~~~~~~~~-------------~~~~~--l--p~~~~~~~~~~~l~~~g~~~i~~  216 (241)
T 3gdh_A          156 GPDY--ATAETFDIRTMMSPDGFEIFRLSKKITN-------------NIVYF--L--PRNADIDQVASLAGPGGQVEIEQ  216 (241)
T ss_dssp             SGGG--GGSSSBCTTTSCSSCHHHHHHHHHHHCS-------------CEEEE--E--ETTBCHHHHHHTTCTTCCEEEEE
T ss_pred             Ccch--hhhHHHHHHhhcCCcceeHHHHHHhhCC-------------ceEEE--C--CCCCCHHHHHHHhccCCCEEEEe
Confidence            8754  3447788999999999855422111000             00000  0  11235678888887777655554


Q ss_pred             EEcc
Q 018405          343 EYGA  346 (356)
Q Consensus       343 ~~~~  346 (356)
                      ....
T Consensus       217 ~~~~  220 (241)
T 3gdh_A          217 NFLN  220 (241)
T ss_dssp             EEET
T ss_pred             hhhc
Confidence            4443

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.93  E-value=4.9e-10  Score=99.76  Aligned_cols=98  Identities=17%  Similarity=0.119  Sum_probs=76.8

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCCC---CCCC-cEEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFES---VPEA-DTIL  256 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~~~~-D~i~  256 (356)
                      .++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++          .++++++.+|..+.   .++. |+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            4568999999999999999998878889999996 877776543          25799999998762   2333 9999


Q ss_pred             ecccccCCChHHH--HHHHHHHHHhCCCCCEEEEE
Q 018405          257 MKWVLSSFDDEQS--LKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       257 ~~~vlh~~~~~~~--~~~L~~~~~~L~pgG~lii~  289 (356)
                      +....+..+.+..  ..++++++++|+|||.+++.
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  191 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  191 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            8655443333332  69999999999999999985

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.93  E-value=5.3e-10  Score=101.61  Aligned_cols=98  Identities=17%  Similarity=0.200  Sum_probs=76.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC---CCCC-C-cEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE---SVPE-A-DTI  255 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~~~-~-D~i  255 (356)
                      .++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++          .++++++.+|..+   ..++ . |+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            4678999999999999999999888889999996 888776653          2589999999865   2232 3 999


Q ss_pred             EecccccCCChHH--HHHHHHHHHHhCCCCCEEEEE
Q 018405          256 LMKWVLSSFDDEQ--SLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       256 ~~~~vlh~~~~~~--~~~~L~~~~~~L~pgG~lii~  289 (356)
                      ++....+..+.+.  ...++++++++|+|||++++.
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9854422211121  478999999999999999985

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.93  E-value=8.7e-10  Score=98.25  Aligned_cols=104  Identities=18%  Similarity=0.292  Sum_probs=75.8

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP  250 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~  250 (356)
                      .+..+++.+. ..+..+|||||||+|.++..+++..  .+++++|. +.+++.++++       ++++++.+|+.+ +.+
T Consensus        16 i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~   92 (285)
T 1zq9_A           16 IINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   92 (285)
T ss_dssp             HHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence            3456677676 6778899999999999999999975  47888886 7776665432       478999999988 666


Q ss_pred             CCcEEEecccccCCChHHHHHHHH--------------HH--HHhCCCCCEEE
Q 018405          251 EADTILMKWVLSSFDDEQSLKLLK--------------NC--YKALPDGGKLL  287 (356)
Q Consensus       251 ~~D~i~~~~vlh~~~~~~~~~~L~--------------~~--~~~L~pgG~li  287 (356)
                      ..|+|+++. -++|+.+....+|.              ++  +.+++|||+++
T Consensus        93 ~fD~vv~nl-py~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           93 FFDTCVANL-PYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             CCSEEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             hhcEEEEec-CcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            569988844 44455444445553              22  46899999653

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.92  E-value=5.7e-10  Score=100.81  Aligned_cols=99  Identities=19%  Similarity=0.185  Sum_probs=77.3

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-----------CCCceEEEccCCC--C-CCCC-cEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-----------YLGIEHVGGDFFE--S-VPEA-DTI  255 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~--~-~~~~-D~i  255 (356)
                      .++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++           .++++++.+|..+  + .++. |+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            3568999999999999999999878889999996 777766542           3579999999876  2 2333 999


Q ss_pred             EecccccC---CChHH--HHHHHHHHHHhCCCCCEEEEEe
Q 018405          256 LMKWVLSS---FDDEQ--SLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       256 ~~~~vlh~---~~~~~--~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      ++....|.   -+.+.  ...++++++++|+|||.+++..
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            99766654   21111  3689999999999999999864

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.92  E-value=1.9e-09  Score=98.41  Aligned_cols=104  Identities=13%  Similarity=0.194  Sum_probs=79.1

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCC-----------------CCceEE
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPSY-----------------LGIEHV  241 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-----------------~~v~~~  241 (356)
                      ...++..+. ..+..+|||||||+|.++..+++. .|..+++++|. +.+++.++++                 ++++++
T Consensus        94 ~~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~  172 (336)
T 2b25_A           94 INMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  172 (336)
T ss_dssp             HHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence            345566665 778889999999999999999998 57789999996 7777666431                 579999


Q ss_pred             EccCCCC---CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          242 GGDFFES---VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       242 ~~D~~~~---~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      .+|+.+.   .+..  |+|++...     +  ...+++++.+.|+|||++++....
T Consensus       173 ~~d~~~~~~~~~~~~fD~V~~~~~-----~--~~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          173 HKDISGATEDIKSLTFDAVALDML-----N--PHVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             ESCTTCCC-------EEEEEECSS-----S--TTTTHHHHGGGEEEEEEEEEEESS
T ss_pred             ECChHHcccccCCCCeeEEEECCC-----C--HHHHHHHHHHhcCCCcEEEEEeCC
Confidence            9999873   3332  99988432     1  234889999999999999987754

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.92  E-value=9.4e-10  Score=92.90  Aligned_cols=96  Identities=10%  Similarity=-0.003  Sum_probs=73.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC--CCCC-C-cEEEecccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE--SVPE-A-DTILMKWVL  261 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~~~-~-D~i~~~~vl  261 (356)
                      +..+|||+|||+|.++..++.+.. .+++++|. +.+++.++++      ++++++.+|+.+  +.+. . |+|++...+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            457999999999999998877643 38999996 8888877643      479999999876  3332 3 999998775


Q ss_pred             cCCChHHHHHHHHHHHH--hCCCCCEEEEEecc
Q 018405          262 SSFDDEQSLKLLKNCYK--ALPDGGKLLNVNVT  292 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~--~L~pgG~lii~e~~  292 (356)
                      | .  .....+++.+.+  +|+|||++++....
T Consensus       133 ~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~  162 (202)
T 2fpo_A          133 R-R--GLLEETINLLEDNGWLADEALIYVESEV  162 (202)
T ss_dssp             S-T--TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             C-C--CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            5 3  335678888876  49999999886544

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.91  E-value=5.7e-10  Score=100.27  Aligned_cols=99  Identities=20%  Similarity=0.189  Sum_probs=74.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC--CC-CCC-cEEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE--SV-PEA-DTIL  256 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~~~-D~i~  256 (356)
                      .++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++          .++++++.+|..+  +. ++. |+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            4668999999999999999999888889999996 877776643          3689999999865  22 233 9999


Q ss_pred             ecccccCCChH--HHHHHHHHHHHhCCCCCEEEEEe
Q 018405          257 MKWVLSSFDDE--QSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       257 ~~~vlh~~~~~--~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +....+..+.+  ....++++++++|+|||++++..
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            86554332211  13578999999999999999854

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.91  E-value=5.9e-10  Score=98.80  Aligned_cols=97  Identities=19%  Similarity=0.182  Sum_probs=75.1

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC--CC-CCC-cEEEe
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE--SV-PEA-DTILM  257 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~~~-D~i~~  257 (356)
                      ++.+|||||||+|..+..+++..+..+++++|+ +.+++.+++          .+|++++.+|..+  +. ++. |+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            568999999999999999998777789999996 888776643          2689999999876  22 233 99999


Q ss_pred             cccccCCChHH--HHHHHHHHHHhCCCCCEEEEE
Q 018405          258 KWVLSSFDDEQ--SLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       258 ~~vlh~~~~~~--~~~~L~~~~~~L~pgG~lii~  289 (356)
                      ....+..+.+.  ...++++++++|+|||.+++.
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~  188 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            55443322111  268999999999999999885

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.90  E-value=5.7e-10  Score=100.58  Aligned_cols=99  Identities=21%  Similarity=0.187  Sum_probs=72.1

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCCC--C-CCC-cEEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFES--V-PEA-DTIL  256 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~--~-~~~-D~i~  256 (356)
                      .++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++          .++++++.+|..+.  . ++. |+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            3568999999999999999999888889999996 877776543          25789999998762  2 233 9999


Q ss_pred             ecccccCCChHHH--HHHHHHHHHhCCCCCEEEEEe
Q 018405          257 MKWVLSSFDDEQS--LKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       257 ~~~vlh~~~~~~~--~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +...-+..+.+..  ..++++++++|+|||++++..
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            8554332222222  689999999999999999854

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.89  E-value=7.4e-10  Score=100.31  Aligned_cols=98  Identities=17%  Similarity=0.119  Sum_probs=75.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCCC---CCCC-cEEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFES---VPEA-DTIL  256 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~~~~-D~i~  256 (356)
                      .++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++          .++++++.+|..+.   .++. |+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            3568999999999999999998878889999996 877776543          25799999998662   2333 9999


Q ss_pred             ecccccCCChHHH--HHHHHHHHHhCCCCCEEEEE
Q 018405          257 MKWVLSSFDDEQS--LKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       257 ~~~vlh~~~~~~~--~~~L~~~~~~L~pgG~lii~  289 (356)
                      +...-+..+.+..  ..++++++++|+|||++++.
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  229 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  229 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            8643222122222  79999999999999999985

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.89  E-value=1.2e-09  Score=97.25  Aligned_cols=97  Identities=21%  Similarity=0.205  Sum_probs=73.2

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC----------------CCCCceEEEccCCCC--CCCC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP----------------SYLGIEHVGGDFFES--VPEA  252 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~~v~~~~~D~~~~--~~~~  252 (356)
                      .++.+|||||||+|..+..+++. |..+++++|+ +.+++.++                ..++++++.+|..+.  .+..
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            35689999999999999999998 8889999996 77776543                235789999997651  1333


Q ss_pred             -cEEEecccccCCChHH--HHHHHHHHHHhCCCCCEEEEE
Q 018405          253 -DTILMKWVLSSFDDEQ--SLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~--~~~~L~~~~~~L~pgG~lii~  289 (356)
                       |+|++....+..+.+.  ...++++++++|+|||++++.
T Consensus       153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence             9999865543322222  268899999999999999885

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.88  E-value=5.5e-09  Score=87.89  Aligned_cols=88  Identities=17%  Similarity=0.166  Sum_probs=67.0

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCCCCCCC-cEEEecccccCCChH
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFESVPEA-DTILMKWVLSSFDDE  267 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~~~~-D~i~~~~vlh~~~~~  267 (356)
                      ..+..+|||+|||+|.++..+++. +..+++++|. +.+++.++++ .+++++.+|+.+. +.. |+|++...+|++++.
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~-~~~~D~v~~~~p~~~~~~~  126 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEI-SGKYDTWIMNPPFGSVVKH  126 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGC-CCCEEEEEECCCC------
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHC-CCCeeEEEECCCchhccCc
Confidence            346689999999999999999886 5557999996 8888877654 3799999998872 344 999999999998765


Q ss_pred             HHHHHHHHHHHhC
Q 018405          268 QSLKLLKNCYKAL  280 (356)
Q Consensus       268 ~~~~~L~~~~~~L  280 (356)
                      ...++++++.+.+
T Consensus       127 ~~~~~l~~~~~~~  139 (200)
T 1ne2_A          127 SDRAFIDKAFETS  139 (200)
T ss_dssp             -CHHHHHHHHHHE
T ss_pred             hhHHHHHHHHHhc
Confidence            5568999999998

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.88  E-value=6.9e-10  Score=108.43  Aligned_cols=101  Identities=16%  Similarity=0.132  Sum_probs=79.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC---CCCC--CcEEEecc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE---SVPE--ADTILMKW  259 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~~~--~D~i~~~~  259 (356)
                      .++.+|||||||.|.++..+++.  +.+++++|. +..++.|+.+      .+|+|..+|..+   ..+.  .|+|+|..
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e  142 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS  142 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence            36789999999999999999985  678999996 8888776542      258999998865   2333  39999999


Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                      +|||+++++....+.++.+.|+++|+.++...+..
T Consensus       143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~  177 (569)
T 4azs_A          143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVK  177 (569)
T ss_dssp             CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCT
T ss_pred             chhcCCCHHHHHHHHHHHHHhccccceeeEEeccc
Confidence            99999887655556677788888887777665543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.87  E-value=1.2e-09  Score=96.78  Aligned_cols=97  Identities=14%  Similarity=0.134  Sum_probs=79.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC-CCCC-cEEEecccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES-VPEA-DTILMKWVL  261 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~-~~~~-D~i~~~~vl  261 (356)
                      +.+..+|||+|||+|.++..+++..+..+++++|. +.+++.++++      +++.++.+|+.+. .+.. |+|++....
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~  196 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH  196 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence            55778999999999999999999988889999996 8888777642      4688999999874 3223 999886543


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                            ....+++++.+.|+|||++++.+...
T Consensus       197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          197 ------KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence                  35678999999999999999877654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.85  E-value=1.2e-09  Score=97.82  Aligned_cols=97  Identities=24%  Similarity=0.283  Sum_probs=72.0

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC--CC-CCC-cEEEe
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE--SV-PEA-DTILM  257 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~~~-D~i~~  257 (356)
                      ++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++          .++++++.+|..+  +. ++. |+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            458999999999999999999878889999996 777766543          2589999999765  22 233 99997


Q ss_pred             cccccCCCh-H--HHHHHHHHHHHhCCCCCEEEEE
Q 018405          258 KWVLSSFDD-E--QSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       258 ~~vlh~~~~-~--~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      ...-+.... .  ...+++++++++|+|||++++.
T Consensus       170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            433220110 0  1268999999999999999985

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.84  E-value=2.4e-09  Score=98.38  Aligned_cols=95  Identities=22%  Similarity=0.253  Sum_probs=70.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC-------CCCceEEEccCCC-CCCCC-cEEEecccccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS-------YLGIEHVGGDFFE-SVPEA-DTILMKWVLSS  263 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~  263 (356)
                      +..+|||||||+|.++...+++. -.+++++|...+++.|++       .++|+++.+|+.+ ..|+. |+|++-..-+.
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~  161 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG  161 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred             CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence            46799999999999987666643 347899996445555543       2679999999988 67765 99988444333


Q ss_pred             CChH-HHHHHHHHHHHhCCCCCEEEE
Q 018405          264 FDDE-QSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       264 ~~~~-~~~~~L~~~~~~L~pgG~lii  288 (356)
                      +..+ ....++....+.|+|||.++-
T Consensus       162 l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          162 LLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccchhhhHHHHHHhhCCCCceECC
Confidence            3323 467888888899999998764

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.84  E-value=8e-09  Score=98.00  Aligned_cols=109  Identities=16%  Similarity=0.187  Sum_probs=82.6

Q ss_pred             HHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CC-CC
Q 018405          185 LESYKGFEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VP-EA  252 (356)
Q Consensus       185 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~-~~  252 (356)
                      ...++ ..+..+|||+|||+|..+..+++..++ .+++++|. +..++.++.+      ++++++.+|+.+ +  ++ ..
T Consensus       252 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~  330 (450)
T 2yxl_A          252 SIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEV  330 (450)
T ss_dssp             HHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSC
T ss_pred             HHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCC
Confidence            33444 667789999999999999999999887 79999996 7766655432      478999999887 3  44 33


Q ss_pred             -cEEEe------cccccCCChH-------HH-------HHHHHHHHHhCCCCCEEEEEecccC
Q 018405          253 -DTILM------KWVLSSFDDE-------QS-------LKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       253 -D~i~~------~~vlh~~~~~-------~~-------~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                       |+|++      ..++++.++.       +.       .++|+++.+.|+|||++++.+....
T Consensus       331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence             99986      4455554432       11       6899999999999999999876553

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.81  E-value=6e-09  Score=91.47  Aligned_cols=89  Identities=11%  Similarity=0.096  Sum_probs=72.6

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCCCCCCCcEEEeccc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFESVPEADTILMKWV  260 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~~~~~D~i~~~~v  260 (356)
                      ..+.+|||||||+|..+..+++. + .+++++|+ +.+++.++++          ++++++.+|..+.....|+|++.  
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d--  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL--  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence            35689999999999999999988 7 89999996 8899988753          47899999987733223999985  


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                         .+++  ..++++++++|+|||.+++.
T Consensus       147 ---~~dp--~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          147 ---QEPD--IHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             ---SCCC--HHHHHHHHTTEEEEEEEEEE
T ss_pred             ---CCCh--HHHHHHHHHhcCCCcEEEEE
Confidence               2332  35999999999999999985

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.80  E-value=1.7e-08  Score=93.45  Aligned_cols=131  Identities=15%  Similarity=0.050  Sum_probs=94.4

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP  250 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~  250 (356)
                      ....++...  +.+..+|||+|||+|.++..++...+..+++++|. +.+++.|+.+       ++++++.+|+.+ +.+
T Consensus       206 la~~l~~~~--~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~  283 (373)
T 3tm4_A          206 IANAMIELA--ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY  283 (373)
T ss_dssp             HHHHHHHHH--TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT
T ss_pred             HHHHHHHhh--cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc
Confidence            344444433  56788999999999999999999888678999996 8888877653       478999999998 554


Q ss_pred             C-C-cEEEecccccCCC-----hHH-HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCcc
Q 018405          251 E-A-DTILMKWVLSSFD-----DEQ-SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRE  322 (356)
Q Consensus       251 ~-~-D~i~~~~vlh~~~-----~~~-~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (356)
                      . . |+|++.-..+...     -++ ...+++.+++.|  +|+++++..                               
T Consensus       284 ~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-------------------------------  330 (373)
T 3tm4_A          284 VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-------------------------------  330 (373)
T ss_dssp             CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-------------------------------
T ss_pred             cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-------------------------------
Confidence            3 3 9999965543211     112 267888999988  555555321                               


Q ss_pred             CCHHHHHHHHHHcCCcceeEEEcc
Q 018405          323 RTKQEYSELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       323 ~t~~e~~~ll~~aGf~~~~~~~~~  346 (356)
                       +.+.+.+.+++.||+..+..+..
T Consensus       331 -~~~~~~~~~~~~G~~~~~~~~~~  353 (373)
T 3tm4_A          331 -EKKAIEEAIAENGFEIIHHRVIG  353 (373)
T ss_dssp             -CHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -CHHHHHHHHHHcCCEEEEEEEEE
Confidence             24566678899999988877764

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.79  E-value=8.1e-09  Score=89.79  Aligned_cols=105  Identities=10%  Similarity=0.179  Sum_probs=74.0

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCceEEEccCCC-CCCC-C
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIEHVGGDFFE-SVPE-A  252 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~-~  252 (356)
                      ....+++.+. ..+..+|||||||+|.++..++++.  .+++++|. +.+++.+++    .++++++.+|+.+ +++. .
T Consensus        18 ~~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~   94 (244)
T 1qam_A           18 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ   94 (244)
T ss_dssp             HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred             HHHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence            3456666665 6677899999999999999999986  67899996 777766543    2689999999988 6664 3


Q ss_pred             cEEEecccccCCChHHHHHHH--------------HHHHHhCCCCCEEE
Q 018405          253 DTILMKWVLSSFDDEQSLKLL--------------KNCYKALPDGGKLL  287 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L--------------~~~~~~L~pgG~li  287 (356)
                      +.+++++.-++++.+-..+++              +.+.+.++|+|++.
T Consensus        95 ~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~  143 (244)
T 1qam_A           95 SYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLA  143 (244)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHH
T ss_pred             CeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchh
Confidence            555555655555444334444              33677777777543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.78  E-value=4.9e-09  Score=92.84  Aligned_cols=103  Identities=13%  Similarity=0.117  Sum_probs=76.3

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CC-----CCC-cEE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SV-----PEA-DTI  255 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~-----~~~-D~i  255 (356)
                      ..+..+|||+|||+|..+..+++..++ .+++++|. +..++.++++      .+++++.+|+.+ +.     +.. |+|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            557789999999999999999998877 78999996 7777665432      478999999876 32     333 999


Q ss_pred             Eec------ccccC---CCh-------HHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          256 LMK------WVLSS---FDD-------EQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       256 ~~~------~vlh~---~~~-------~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      ++.      .+++.   |+.       +...++|+++.+.|+|||++++.....
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            885      22221   111       124789999999999999999976554

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.76  E-value=9e-09  Score=94.25  Aligned_cols=100  Identities=13%  Similarity=0.210  Sum_probs=79.1

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCC-----CeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCC-CC-cEEEec
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPR-----IKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVP-EA-DTILMK  258 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~-~~-D~i~~~  258 (356)
                      .+..+|||+|||+|.++..+++..+.     .+++++|+ +.+++.|+..     .++.++.+|.+.+.+ .. |+|++.
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N  208 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD  208 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence            45689999999999999999988765     68999996 7777766542     268899999988543 33 999999


Q ss_pred             ccccCCChHHH----------------HHHHHHHHHhCCCCCEEEEEec
Q 018405          259 WVLSSFDDEQS----------------LKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       259 ~vlh~~~~~~~----------------~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      -.+++++.++.                ..+++++.+.|+|||+++++.+
T Consensus       209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            88777654432                2689999999999999988653

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.76  E-value=1.4e-08  Score=90.07  Aligned_cols=115  Identities=13%  Similarity=0.078  Sum_probs=81.4

Q ss_pred             CCCCceEEEEcCC------ccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCCCCceE-EEccCCC-CCCCC-cEEEecc
Q 018405          191 FEHVKKLVDVGGG------LGATLNMIISKYP-RIKGINYDL-PYVIKNAPSYLGIEH-VGGDFFE-SVPEA-DTILMKW  259 (356)
Q Consensus       191 ~~~~~~vLDiG~G------~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~v~~-~~~D~~~-~~~~~-D~i~~~~  259 (356)
                      +++..+|||+|||      +|.  ..+++..| +.+++++|+ +.       .+++++ +.+|+.+ +.+.. |+|++..
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------v~~v~~~i~gD~~~~~~~~~fD~Vvsn~  131 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------VSDADSTLIGDCATVHTANKWDLIISDM  131 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------BCSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------CCCCEEEEECccccCCccCcccEEEEcC
Confidence            5677899999994      476  44566666 689999997 44       147999 9999988 54444 9999853


Q ss_pred             cccC--------C-ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018405          260 VLSS--------F-DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSE  330 (356)
Q Consensus       260 vlh~--------~-~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~  330 (356)
                      ..+.        . ..+....+|+.+++.|+|||++++.....                          +   ...++.+
T Consensus       132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~--------------------------~---~~~~l~~  182 (290)
T 2xyq_A          132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH--------------------------S---WNADLYK  182 (290)
T ss_dssp             CCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS--------------------------S---CCHHHHH
T ss_pred             CccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc--------------------------C---CHHHHHH
Confidence            3221        0 01235689999999999999999853211                          0   1237778


Q ss_pred             HHHHcCCcceeEE
Q 018405          331 LAIKAGFKGVNYE  343 (356)
Q Consensus       331 ll~~aGf~~~~~~  343 (356)
                      ++++.||..+++.
T Consensus       183 ~l~~~GF~~v~~~  195 (290)
T 2xyq_A          183 LMGHFSWWTAFVT  195 (290)
T ss_dssp             HHTTEEEEEEEEE
T ss_pred             HHHHcCCcEEEEE
Confidence            8888888877665

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.74  E-value=2.7e-09  Score=92.89  Aligned_cols=106  Identities=8%  Similarity=0.123  Sum_probs=78.9

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCC-CcE
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPE-ADT  254 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~-~D~  254 (356)
                      ..+++.+. ..+..+|||||||+|.++..+++..  .+++++|. +.+++.++++    ++++++.+|+.+ +++. ...
T Consensus        19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f   95 (245)
T 1yub_A           19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY   95 (245)
T ss_dssp             HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence            45666665 6678899999999999999999975  78999996 7787777654    478999999988 6653 334


Q ss_pred             EEecccccCCChHHHHHHH--------------HHHHHhCCCCCEEEEEe
Q 018405          255 ILMKWVLSSFDDEQSLKLL--------------KNCYKALPDGGKLLNVN  290 (356)
Q Consensus       255 i~~~~vlh~~~~~~~~~~L--------------~~~~~~L~pgG~lii~e  290 (356)
                      +++++.-++.+.+....++              +.+.++|+|||++.++.
T Consensus        96 ~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           96 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            5555555555544444444              66899999999887754

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.73  E-value=2.5e-08  Score=93.79  Aligned_cols=106  Identities=17%  Similarity=0.131  Sum_probs=78.2

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCC-CC-cEEEe
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVP-EA-DTILM  257 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~-~~-D~i~~  257 (356)
                      ..+++.+. ..+..+|||+|||+|.++..+++++ +..+++++|+ +.+++.+   .+++++.+|+.+..+ .. |+|++
T Consensus        29 ~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~  104 (421)
T 2ih2_A           29 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG  104 (421)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred             HHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence            44455454 3456799999999999999999887 6789999996 7777666   589999999988433 33 99999


Q ss_pred             cccc----------cCCChHHH-----------------HHHHHHHHHhCCCCCEEEEEec
Q 018405          258 KWVL----------SSFDDEQS-----------------LKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       258 ~~vl----------h~~~~~~~-----------------~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      +--.          +|++++..                 ..+++++.+.|+|||+++++-+
T Consensus       105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p  165 (421)
T 2ih2_A          105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  165 (421)
T ss_dssp             CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            5221          11323221                 2679999999999999998654

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.71  E-value=2.7e-08  Score=89.16  Aligned_cols=101  Identities=18%  Similarity=0.273  Sum_probs=72.0

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPE  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~  251 (356)
                      ....+++.+. ..+..+|||||||+|.++..+++.  ..+++++|. +.+++.++++      ++++++.+|+.+ +.+.
T Consensus        30 i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~  106 (299)
T 2h1r_A           30 ILDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK  106 (299)
T ss_dssp             HHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCC
T ss_pred             HHHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCccc
Confidence            3455666665 667889999999999999999986  458999996 7777666432      579999999988 5555


Q ss_pred             CcEEEecccccCCChHHHHHHH---------------HHHHHhCCCCC
Q 018405          252 ADTILMKWVLSSFDDEQSLKLL---------------KNCYKALPDGG  284 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~~~~~~~L---------------~~~~~~L~pgG  284 (356)
                      .|+|++.. -++++.+....+|               +.+.++++|+|
T Consensus       107 ~D~Vv~n~-py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G  153 (299)
T 2h1r_A          107 FDVCTANI-PYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG  153 (299)
T ss_dssp             CSEEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred             CCEEEEcC-CcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence            59998854 4556666566666               44678888876

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.70  E-value=3.9e-07  Score=83.55  Aligned_cols=152  Identities=18%  Similarity=0.185  Sum_probs=93.6

Q ss_pred             CceEEEEcCCccHHHHHH--------HHhC-------CCCeEEEccchHH--------HHhCCC----------C-CC--
Q 018405          194 VKKLVDVGGGLGATLNMI--------ISKY-------PRIKGINYDLPYV--------IKNAPS----------Y-LG--  237 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~~--------~~~a~~----------~-~~--  237 (356)
                      ..+|+|+|||+|..+..+        .+++       |++++...|+|.-        +...++          . .+  
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            589999999999988876        2233       7888888887541        122111          0 01  


Q ss_pred             -ceEEEccCCC-CCCCC--cEEEecccccCCCh------------------------------------HHHHHHHHHHH
Q 018405          238 -IEHVGGDFFE-SVPEA--DTILMKWVLSSFDD------------------------------------EQSLKLLKNCY  277 (356)
Q Consensus       238 -v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~------------------------------------~~~~~~L~~~~  277 (356)
                       +.-+.+.+.. .+|+.  |+|+++.+||.+++                                    .|...+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2234566666 67765  99999999998762                                    13456799999


Q ss_pred             HhCCCCCEEEEEecccCCCCCCchhh--hhh--hhhhhh-hhhh------------cCCCccCCHHHHHHHHH-HcCCcc
Q 018405          278 KALPDGGKLLNVNVTIPEVPENSATS--REI--SILDTI-CLFQ------------VPHGRERTKQEYSELAI-KAGFKG  339 (356)
Q Consensus       278 ~~L~pgG~lii~e~~~~~~~~~~~~~--~~~--~~~~~~-~~~~------------~~~~~~~t~~e~~~ll~-~aGf~~  339 (356)
                      +.|+|||++++.-...++........  ...  .....+ -+..            ..-...++.+|++++++ +.||++
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I  292 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI  292 (374)
T ss_dssp             HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred             HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence            99999999999766554321110000  000  000000 0100            00123479999999998 599998


Q ss_pred             eeEEEc
Q 018405          340 VNYEYG  345 (356)
Q Consensus       340 ~~~~~~  345 (356)
                      .++...
T Consensus       293 ~~le~~  298 (374)
T 3b5i_A          293 DKLVVY  298 (374)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            876543

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.69  E-value=1.9e-08  Score=94.85  Aligned_cols=109  Identities=17%  Similarity=0.228  Sum_probs=81.1

Q ss_pred             HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-C--CCC-C-
Q 018405          184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-S--VPE-A-  252 (356)
Q Consensus       184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~--~~~-~-  252 (356)
                      +...++ ..+..+|||+|||+|..+..+++..++.+++++|. +..++.++++     -+++++.+|+.+ +  ++. . 
T Consensus       238 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~f  316 (429)
T 1sqg_A          238 CMTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQF  316 (429)
T ss_dssp             HHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCE
T ss_pred             HHHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCC
Confidence            344444 56778999999999999999999998889999996 6655554432     257899999887 3  332 3 


Q ss_pred             cEEEe------cccccCCChH-------HH-------HHHHHHHHHhCCCCCEEEEEeccc
Q 018405          253 DTILM------KWVLSSFDDE-------QS-------LKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       253 D~i~~------~~vlh~~~~~-------~~-------~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      |+|++      ..++++.++.       +.       .++|+++.+.|+|||++++.+...
T Consensus       317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            99986      3445554431       11       588999999999999999987654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.69  E-value=2.4e-08  Score=90.72  Aligned_cols=95  Identities=17%  Similarity=0.085  Sum_probs=72.2

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------C--CceEEEccCCCCC------CC-CcEEE
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------L--GIEHVGGDFFESV------PE-ADTIL  256 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~------~~-~D~i~  256 (356)
                      +..+|||+|||+|.++..+++..  .+++++|. +.+++.++++      +  +++++.+|+++..      .. .|+|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            56799999999999999999854  48999996 8888777643      2  4899999987721      22 39999


Q ss_pred             eccc----------ccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          257 MKWV----------LSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       257 ~~~v----------lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      +.-.          ++..  ++...+++++.++|+|||.+++...
T Consensus       231 ~dPP~~~~~~~~~~~~~~--~~~~~ll~~~~~~LkpgG~lli~~~  273 (332)
T 2igt_A          231 TDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSPKALGLVLTA  273 (332)
T ss_dssp             ECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             ECCccccCCchHHHHHHH--HHHHHHHHHHHHhcCcCcEEEEEEC
Confidence            8322          2222  4567999999999999999777543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.67  E-value=1.2e-07  Score=80.01  Aligned_cols=89  Identities=15%  Similarity=0.063  Sum_probs=70.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----C-CceEEEccCCCCCCCCcEEEecccccCC
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----L-GIEHVGGDFFESVPEADTILMKWVLSSF  264 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~D~~~~~~~~D~i~~~~vlh~~  264 (356)
                      ..+..+|||+|||+|.++..+++.. ..+++++|. +.+++.++.+    . +++++.+|+.+.....|+|++...+|.+
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~  125 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQ  125 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSS
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCccc
Confidence            3466899999999999999998873 347999996 7777776543    2 6899999988732234999999988887


Q ss_pred             ChHHHHHHHHHHHHhC
Q 018405          265 DDEQSLKLLKNCYKAL  280 (356)
Q Consensus       265 ~~~~~~~~L~~~~~~L  280 (356)
                      .......+|+++.+.+
T Consensus       126 ~~~~~~~~l~~~~~~l  141 (207)
T 1wy7_A          126 RKHADRPFLLKAFEIS  141 (207)
T ss_dssp             STTTTHHHHHHHHHHC
T ss_pred             cCCchHHHHHHHHHhc
Confidence            6555678899999998

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.66  E-value=6.1e-08  Score=92.28  Aligned_cols=101  Identities=21%  Similarity=0.287  Sum_probs=76.6

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCCC-cEEEec--
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPEA-DTILMK--  258 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~-D~i~~~--  258 (356)
                      +..+|||+|||+|..+..+++..+ ..+++++|. +..++.++++      .++.++.+|..+ +  .+.. |+|++.  
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            678999999999999999999875 478999996 7777666542      478999999887 3  3344 999871  


Q ss_pred             ----ccc-------cCCChHH-------HHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          259 ----WVL-------SSFDDEQ-------SLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       259 ----~vl-------h~~~~~~-------~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                          .++       .+|+.++       ..++|+++.++|+|||+|++.....
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence                223       2343322       3578999999999999999876544

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.65  E-value=3.8e-08  Score=86.69  Aligned_cols=120  Identities=18%  Similarity=0.185  Sum_probs=88.1

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC--CcEEEeccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE--ADTILMKWV  260 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~v  260 (356)
                      .+++.+|||+|||+|.++..+++. ...+++++|+ |..++.++++       ++++++.+|..+-.++  +|.|++...
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p  201 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  201 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence            347889999999999999998876 4568999996 8777766542       6799999999873333  398887533


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcce
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV  340 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~  340 (356)
                      -      ....+|..+.++|+|||+|.+.+....+.                       ......+.++++.++.|+++.
T Consensus       202 ~------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~-----------------------~~~~~~e~i~~~~~~~g~~v~  252 (278)
T 3k6r_A          202 V------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE  252 (278)
T ss_dssp             S------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred             C------cHHHHHHHHHHHcCCCCEEEEEeeecccc-----------------------cchhHHHHHHHHHHHcCCcEE
Confidence            1      24567888899999999998876653221                       001235678888899998764

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.62  E-value=1.7e-08  Score=95.32  Aligned_cols=102  Identities=10%  Similarity=0.109  Sum_probs=76.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCCC-cEEEe-
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPEA-DTILM-  257 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~-D~i~~-  257 (356)
                      ..+..+|||+|||+|..+..+++..++ .+++++|. +..++.++++      . +.++.+|..+ +  .+.. |+|++ 
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D  177 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD  177 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence            567889999999999999999998865 68999996 7777766543      4 8888898766 3  2333 99985 


Q ss_pred             -----ccccc-------CCChHHH-------HHHHHHHHHhCCCCCEEEEEeccc
Q 018405          258 -----KWVLS-------SFDDEQS-------LKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       258 -----~~vlh-------~~~~~~~-------~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                           ..+++       .|+.++.       .++|+++.+.|+|||+|+......
T Consensus       178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence                 12222       2332222       789999999999999999865443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.49  E-value=1.1e-06  Score=82.75  Aligned_cols=99  Identities=12%  Similarity=0.167  Sum_probs=70.0

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC---
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP---  250 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~---  250 (356)
                      ...+++.+. ..+..+|||+|||+|.++..+++.  ..+++++|. +.+++.|+.+      ++++++.+|+.+..+   
T Consensus       275 ~~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~  351 (433)
T 1uwv_A          275 VARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP  351 (433)
T ss_dssp             HHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG
T ss_pred             HHHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhh
Confidence            445555555 566789999999999999999987  568999996 8888777542      479999999987322   


Q ss_pred             --C--CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          251 --E--ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       251 --~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                        .  .|+|++.-     |......+++.+.+ ++|++.+++
T Consensus       352 ~~~~~fD~Vv~dP-----Pr~g~~~~~~~l~~-~~p~~ivyv  387 (433)
T 1uwv_A          352 WAKNGFDKVLLDP-----ARAGAAGVMQQIIK-LEPIRIVYV  387 (433)
T ss_dssp             GGTTCCSEEEECC-----CTTCCHHHHHHHHH-HCCSEEEEE
T ss_pred             hhcCCCCEEEECC-----CCccHHHHHHHHHh-cCCCeEEEE
Confidence              2  39998832     22212345555543 678777766

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=98.48  E-value=1.3e-06  Score=79.16  Aligned_cols=142  Identities=13%  Similarity=0.151  Sum_probs=104.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC---------------------------CCCceEEEcc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS---------------------------YLGIEHVGGD  244 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~v~~~~~D  244 (356)
                      .+...||.+|||......++...+++++++-+|+|.+++.-++                           .++..++..|
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            3568999999999999999999888999999999887654321                           1578899999


Q ss_pred             CCC-CC---------C-CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhh
Q 018405          245 FFE-SV---------P-EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTI  312 (356)
Q Consensus       245 ~~~-~~---------~-~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~  312 (356)
                      +.+ ++         . .. .++++-.+|++++.++..++|+.+.+.+ |+|.+++.|.+.+..+...    +...+-..
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~----fg~~m~~~  250 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDR----FGAIMQSN  250 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCC----HHHHHHHH
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcch----HHHHHHHH
Confidence            987 32         1 22 8999999999999999999999999987 7888888998876322111    11111100


Q ss_pred             h---hhh-cCC-CccCCHHHHHHHHHHcCCc
Q 018405          313 C---LFQ-VPH-GRERTKQEYSELAIKAGFK  338 (356)
Q Consensus       313 ~---~~~-~~~-~~~~t~~e~~~ll~~aGf~  338 (356)
                      +   ... ..+ ....+.++..+.|.++||+
T Consensus       251 l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          251 LKESRNLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             HHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             hhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence            0   000 111 2346899999999999997

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.47  E-value=4.6e-07  Score=78.79  Aligned_cols=92  Identities=18%  Similarity=0.227  Sum_probs=68.3

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCC-CCCCC--c
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE-SVPEA--D  253 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~~--D  253 (356)
                      ....+++.+. ..+..+|||||||+|.++..+++. +..+++++|. +.+++.++++  .+++++.+|+.+ ++++.  +
T Consensus        19 i~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~   96 (249)
T 3ftd_A           19 VLKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKE   96 (249)
T ss_dssp             HHHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSS
T ss_pred             HHHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCC
Confidence            3456677666 667889999999999999999986 4578999996 8888777654  578999999988 66542  5


Q ss_pred             EEEecccccCCChHHHHHHH
Q 018405          254 TILMKWVLSSFDDEQSLKLL  273 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L  273 (356)
                      .+++.+.-++.+.+-..++|
T Consensus        97 ~~vv~NlPy~i~~~il~~ll  116 (249)
T 3ftd_A           97 LKVVGNLPYNVASLIIENTV  116 (249)
T ss_dssp             EEEEEECCTTTHHHHHHHHH
T ss_pred             cEEEEECchhccHHHHHHHH
Confidence            66777777766543333333

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.47  E-value=2e-06  Score=78.95  Aligned_cols=151  Identities=19%  Similarity=0.175  Sum_probs=91.7

Q ss_pred             CceEEEEcCCccHHHHHHHHh-----------------CCCCeEEEccchH------------HHHhC----CCCCCceE
Q 018405          194 VKKLVDVGGGLGATLNMIISK-----------------YPRIKGINYDLPY------------VIKNA----PSYLGIEH  240 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~~------------~~~~a----~~~~~v~~  240 (356)
                      ..+|+|+||++|..+..+...                 .|++.++..|+|.            ..+..    ....+-.|
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            689999999999998887766                 4778888889771            11111    11123344


Q ss_pred             EE---ccCCC-CCCCC--cEEEecccccCCChHH-------------------------H------------HHHHHHHH
Q 018405          241 VG---GDFFE-SVPEA--DTILMKWVLSSFDDEQ-------------------------S------------LKLLKNCY  277 (356)
Q Consensus       241 ~~---~D~~~-~~~~~--D~i~~~~vlh~~~~~~-------------------------~------------~~~L~~~~  277 (356)
                      +.   +.|.. .+|..  |+|+++.+||.+++..                         +            ..+|+..+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44   55555 67766  9999999999765321                         1            12377779


Q ss_pred             HhCCCCCEEEEEecccCCCC-CCchh-hhhhhhhhhhhhh---------hcCCCccCCHHHHHHHHHHcC-CcceeEEE
Q 018405          278 KALPDGGKLLNVNVTIPEVP-ENSAT-SREISILDTICLF---------QVPHGRERTKQEYSELAIKAG-FKGVNYEY  344 (356)
Q Consensus       278 ~~L~pgG~lii~e~~~~~~~-~~~~~-~~~~~~~~~~~~~---------~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~  344 (356)
                      +.|+|||++++.-...++.. .+... .....+.++..-.         ...-...++.+|++++++++| |++.++..
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~  291 (384)
T 2efj_A          213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLET  291 (384)
T ss_dssp             HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEE
T ss_pred             HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEE
Confidence            99999999999766554420 11100 0001111110000         000134579999999999985 77776543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.45  E-value=2.8e-07  Score=85.55  Aligned_cols=114  Identities=9%  Similarity=-0.011  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC--------------------------------------C
Q 018405          177 TCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR--------------------------------------I  218 (356)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~  218 (356)
                      ....+..++.... +.+...|||.+||+|.++++.+....+                                      .
T Consensus       186 ~e~lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  264 (393)
T 3k0b_A          186 KETMAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL  264 (393)
T ss_dssp             CHHHHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             cHHHHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence            3445566676555 888899999999999999888765433                                      5


Q ss_pred             eEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccccC-CC-hHHHHHHHHHHHHhCCC--CC
Q 018405          219 KGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVLSS-FD-DEQSLKLLKNCYKALPD--GG  284 (356)
Q Consensus       219 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~-~~-~~~~~~~L~~~~~~L~p--gG  284 (356)
                      +++++|. +.+++.|+.+       ++++++.+|+.+ +.+.. |+|+++--... +. .++...+.+.+.+.|++  ||
T Consensus       265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~  344 (393)
T 3k0b_A          265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTW  344 (393)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCC
Confidence            6999996 8888877643       469999999988 44444 99999744322 11 23456667766666665  89


Q ss_pred             EEEEEec
Q 018405          285 KLLNVNV  291 (356)
Q Consensus       285 ~lii~e~  291 (356)
                      .++++..
T Consensus       345 ~~~iit~  351 (393)
T 3k0b_A          345 SVYVLTS  351 (393)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            8888764

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.45  E-value=1.2e-07  Score=89.91  Aligned_cols=111  Identities=18%  Similarity=0.132  Sum_probs=80.7

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-------------CCCeEEEccc-hHHHHhCCCC------C--C
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-------------PRIKGINYDL-PYVIKNAPSY------L--G  237 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~------~--~  237 (356)
                      .+..+++.+. ..+..+|+|.|||+|.++..+.+..             +..+++++|+ +.+++.|+.+      .  +
T Consensus       159 v~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~  237 (445)
T 2okc_A          159 LIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR  237 (445)
T ss_dssp             HHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence            3445555554 4566799999999999999888754             4467899996 7777666432      2  6


Q ss_pred             ceEEEccCCC-CCCCC-cEEEecccccCCChH---------------HHHHHHHHHHHhCCCCCEEEEEec
Q 018405          238 IEHVGGDFFE-SVPEA-DTILMKWVLSSFDDE---------------QSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       238 v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~~~---------------~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      +.+..+|.+. +.... |+|+++-.++.....               ....+++++.+.|+|||+++++-+
T Consensus       238 ~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          238 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            7899999988 44334 999998666553211               124789999999999999988764

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.45  E-value=3.4e-07  Score=81.47  Aligned_cols=90  Identities=16%  Similarity=0.222  Sum_probs=65.6

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCC--
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPE--  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~--  251 (356)
                      .+..+++.+. ..+..+|||||||+|.++..+++.  ..+++++|. +.+++.++++    ++++++.+|+.+ ++++  
T Consensus        38 i~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~  114 (295)
T 3gru_A           38 FVNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD  114 (295)
T ss_dssp             HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred             HHHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence            4566777776 677889999999999999999997  457888885 7776666542    689999999998 6665  


Q ss_pred             CcEEEecccccCCChHHHHHHH
Q 018405          252 ADTILMKWVLSSFDDEQSLKLL  273 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~~~~~~~L  273 (356)
                      .|+|+++... +++.+-..++|
T Consensus       115 fD~Iv~NlPy-~is~pil~~lL  135 (295)
T 3gru_A          115 FNKVVANLPY-QISSPITFKLI  135 (295)
T ss_dssp             CSEEEEECCG-GGHHHHHHHHH
T ss_pred             ccEEEEeCcc-cccHHHHHHHH
Confidence            3998866443 34333333333

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.43  E-value=8e-07  Score=82.13  Aligned_cols=114  Identities=9%  Similarity=-0.023  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC--------------------------------------C
Q 018405          177 TCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR--------------------------------------I  218 (356)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~  218 (356)
                      ....+..++.... +.+...|+|.+||+|.++++.+....+                                      .
T Consensus       179 ~e~LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  257 (384)
T 3ldg_A          179 KENMAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL  257 (384)
T ss_dssp             CHHHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             cHHHHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence            3445566676555 888899999999999999988765433                                      5


Q ss_pred             eEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccccC-C-ChHHHHHHHHHHHHhCCC--CC
Q 018405          219 KGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVLSS-F-DDEQSLKLLKNCYKALPD--GG  284 (356)
Q Consensus       219 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~-~-~~~~~~~~L~~~~~~L~p--gG  284 (356)
                      +++++|. +.+++.|+.+       ++++++.+|+.+ +.+.. |+|++.--.+. + ..++...+.+.+.+.|++  ||
T Consensus       258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~  337 (384)
T 3ldg_A          258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTW  337 (384)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTS
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCc
Confidence            6999996 8888877653       468999999988 44444 99998744332 2 235677888888888876  89


Q ss_pred             EEEEEec
Q 018405          285 KLLNVNV  291 (356)
Q Consensus       285 ~lii~e~  291 (356)
                      +++|+..
T Consensus       338 ~~~iit~  344 (384)
T 3ldg_A          338 SQFILTN  344 (384)
T ss_dssp             EEEEEES
T ss_pred             EEEEEEC
Confidence            9888765

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.43  E-value=1.2e-07  Score=88.09  Aligned_cols=97  Identities=13%  Similarity=0.090  Sum_probs=73.7

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCC------CCC-cEEEec
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESV------PEA-DTILMK  258 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~------~~~-D~i~~~  258 (356)
                      +..+|||+|||+|.++..++..  ..+++++|. +.+++.++.+      ++++++.+|+++..      +.. |+|++.
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            6789999999999999999987  567999996 8887777543      35899999987621      233 999984


Q ss_pred             ccccCCCh-------HHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          259 WVLSSFDD-------EQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       259 ~vlh~~~~-------~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      -.-+..+.       +....+++++.+.|+|||.+++...
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            32211111       3467899999999999999999764

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.41  E-value=6e-07  Score=83.27  Aligned_cols=99  Identities=12%  Similarity=0.087  Sum_probs=71.5

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---C--CceEEEccCCCC---CCC-CcEEEecccc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---L--GIEHVGGDFFES---VPE-ADTILMKWVL  261 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--~v~~~~~D~~~~---~~~-~D~i~~~~vl  261 (356)
                      ++..+|||+|||+|.++..++...  .+++++|+ +.+++.++++   .  ..++..+|+++.   .+. .|+|++.-..
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~  290 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT  290 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred             cCCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence            347899999999999999999863  45999996 8888777653   1  235778888762   222 3999985332


Q ss_pred             cCCCh-------HHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          262 SSFDD-------EQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       262 h~~~~-------~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      ..-+.       .....+++.+.++|+|||+|+++...
T Consensus       291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS  328 (393)
T ss_dssp             CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            11111       23468999999999999999976654

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.41  E-value=1.5e-07  Score=87.86  Aligned_cols=99  Identities=17%  Similarity=0.146  Sum_probs=74.4

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC------CCC-cEEEe
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV------PEA-DTILM  257 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~------~~~-D~i~~  257 (356)
                      +..+|||+|||+|.++..+++. +..+++++|. +.+++.++++       ++++++.+|+++..      +.. |+|++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            6789999999999999999986 3458999996 7777776543       27899999987621      223 99998


Q ss_pred             cccccCCCh-------HHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          258 KWVLSSFDD-------EQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       258 ~~vlh~~~~-------~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      .-..+..+.       .....+++++.+.|+|||.+++....
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            432221111       44678999999999999999887643

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.40  E-value=1.1e-07  Score=89.57  Aligned_cols=103  Identities=15%  Similarity=0.133  Sum_probs=75.0

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCCC-cEEEec
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPEA-DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~-D~i~~~  258 (356)
                      ..+..+|||+|||+|..+..+++..++ .+++++|. +..++.++++      .++.++.+|... +  .+.. |+|++.
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            567889999999999999999988664 68999996 7777666542      468888888766 2  3333 999873


Q ss_pred             c------cccCCCh-------HH-------HHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          259 W------VLSSFDD-------EQ-------SLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       259 ~------vlh~~~~-------~~-------~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      -      ++..-++       ++       ..++|+++.++|+|||+|+......
T Consensus       183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            2      2222111       11       2388999999999999999865543

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.40  E-value=4.9e-06  Score=75.68  Aligned_cols=152  Identities=16%  Similarity=0.166  Sum_probs=91.9

Q ss_pred             CCCceEEEEcCCccHHHHHHHHh----------------CCCCeEEEccchH-----HHHhCCC---CCCceE---EEcc
Q 018405          192 EHVKKLVDVGGGLGATLNMIISK----------------YPRIKGINYDLPY-----VIKNAPS---YLGIEH---VGGD  244 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~-----~~~~a~~---~~~v~~---~~~D  244 (356)
                      .+..+|+|+||++|..+..+...                .|.+.++..|+|.     ..+....   ..+-.|   +.+.
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS  129 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence            34578999999999876654433                5777888888753     1111111   012234   4566


Q ss_pred             CCC-CCCCC--cEEEecccccCCCh-------------------------------HHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          245 FFE-SVPEA--DTILMKWVLSSFDD-------------------------------EQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       245 ~~~-~~~~~--D~i~~~~vlh~~~~-------------------------------~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      |.. .+|+.  |+|+++.+||.+++                               .|...+|+..++.|+|||++++.-
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            766 67776  99999999997653                               123456999999999999999876


Q ss_pred             cccCCCCCCc-----hhh-hhhhhhhhhhhhh---------cCCCccCCHHHHHHHHHHcCC-cceeEE
Q 018405          291 VTIPEVPENS-----ATS-REISILDTICLFQ---------VPHGRERTKQEYSELAIKAGF-KGVNYE  343 (356)
Q Consensus       291 ~~~~~~~~~~-----~~~-~~~~~~~~~~~~~---------~~~~~~~t~~e~~~ll~~aGf-~~~~~~  343 (356)
                      ...++.....     ... ....+.++..-..         ..-...++.+|++++++++|. ++.+..
T Consensus       210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e  278 (359)
T 1m6e_X          210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE  278 (359)
T ss_dssp             EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred             ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence            5554321000     000 0011111100000         001345689999999999965 666543

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.40  E-value=1.5e-07  Score=87.43  Aligned_cols=99  Identities=13%  Similarity=0.027  Sum_probs=72.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------C--CceEEEccCCCCC------CCC-cEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------L--GIEHVGGDFFESV------PEA-DTI  255 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~------~~~-D~i  255 (356)
                      .+..+|||+|||+|.++..+++.. ..+++++|. +.+++.|+++      +  +++++.+|+++..      ... |+|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I  289 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  289 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence            456899999999999999999853 237999996 8787776542      2  7899999987621      223 999


Q ss_pred             Eecccc-----cCCC--hHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          256 LMKWVL-----SSFD--DEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       256 ~~~~vl-----h~~~--~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      ++.-..     ++..  .+...++++.+.+.|+|||.+++...
T Consensus       290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            984222     1221  13355788999999999999988653

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.37  E-value=3.1e-07  Score=89.43  Aligned_cols=125  Identities=22%  Similarity=0.217  Sum_probs=81.7

Q ss_pred             hhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhcC---CCCCceEEEEcCCccHHHHHHHHhC----CCCeEEEccchHH
Q 018405          156 YDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKG---FEHVKKLVDVGGGLGATLNMIISKY----PRIKGINYDLPYV  228 (356)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~----p~~~~~~~D~~~~  228 (356)
                      |+-+++|+-.-..|.+++.       +.+.+..++   ..+...|+|||||+|.+....+++.    -++++.+++-..+
T Consensus       324 YevFEkD~vKy~~Ye~AI~-------~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~  396 (637)
T 4gqb_A          324 YEVFEKDPIKYSQYQQAIY-------KCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN  396 (637)
T ss_dssp             HHHHTTCHHHHHHHHHHHH-------HHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred             hhhhcCChhhHHHHHHHHH-------HHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence            5556677655555555442       333333321   2244679999999999844433322    2346788885334


Q ss_pred             HHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEE
Q 018405          229 IKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLL  287 (356)
Q Consensus       229 ~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~li  287 (356)
                      +..+++.       ++|+++.+|+.+ ..|+- |+|++-..-+..-.|-...+|....+.|||||.++
T Consensus       397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          397 AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            4444321       679999999999 77765 99998666555555656678888889999998753

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.36  E-value=7.6e-07  Score=78.20  Aligned_cols=90  Identities=17%  Similarity=0.123  Sum_probs=64.5

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCC--C-
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPE--A-  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~--~-  252 (356)
                      ...+++.+. ..+. +|||||||+|.++..+++..  .+++++|. +.+++.++++   ++++++.+|+.+ ++++  . 
T Consensus        36 ~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~  111 (271)
T 3fut_A           36 LRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG  111 (271)
T ss_dssp             HHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred             HHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence            456677666 6677 99999999999999999975  46777775 6666655432   579999999988 6553  2 


Q ss_pred             cEEEecccccCCChHHHHHHHHH
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKN  275 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~  275 (356)
                      |. +..+.-++.+.+-..++|..
T Consensus       112 ~~-iv~NlPy~iss~il~~ll~~  133 (271)
T 3fut_A          112 SL-LVANLPYHIATPLVTRLLKT  133 (271)
T ss_dssp             EE-EEEEECSSCCHHHHHHHHHH
T ss_pred             cE-EEecCcccccHHHHHHHhcC
Confidence            55 44556666766555566654

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.36  E-value=2.5e-07  Score=84.21  Aligned_cols=92  Identities=16%  Similarity=0.163  Sum_probs=72.1

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCCCcEEEecccccC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPEADTILMKWVLSS  263 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~D~i~~~~vlh~  263 (356)
                      .+..+|||+|||+|.++.. ++  ...+++++|. +.+++.++++       ++++++.+|+++.....|+|++.-. + 
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP-~-  268 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP-K-  268 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT-T-
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc-H-
Confidence            4678999999999999999 76  5678999996 8887776543       4799999999884333399998422 1 


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                          ....+++.+.+.|+|||++++.+..
T Consensus       269 ----~~~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          269 ----FAHKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             ----TGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             ----hHHHHHHHHHHHcCCCCEEEEEEee
Confidence                1348899999999999999997654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.34  E-value=6.8e-07  Score=82.80  Aligned_cols=113  Identities=17%  Similarity=0.070  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC--------------------------------------Ce
Q 018405          178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR--------------------------------------IK  219 (356)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~~  219 (356)
                      ...+..++.... +.+..+|||.+||+|.++...+....+                                      .+
T Consensus       181 e~lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          181 ETLAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             HHHHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             HHHHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            344556666555 778899999999999999998775322                                      57


Q ss_pred             EEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccccC-CC-hHHHHHHHHHHHHhCCC--CCE
Q 018405          220 GINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVLSS-FD-DEQSLKLLKNCYKALPD--GGK  285 (356)
Q Consensus       220 ~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~-~~-~~~~~~~L~~~~~~L~p--gG~  285 (356)
                      ++++|. +.+++.|+.+       +++++..+|+.+ +.+.. |+|++.--... +. .++...+.+.+.+.|++  |+.
T Consensus       260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~  339 (385)
T 3ldu_A          260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS  339 (385)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence            999996 8888887653       368999999988 44443 99999655432 22 24566777777777776  888


Q ss_pred             EEEEec
Q 018405          286 LLNVNV  291 (356)
Q Consensus       286 lii~e~  291 (356)
                      ++++..
T Consensus       340 ~~iit~  345 (385)
T 3ldu_A          340 YYLITS  345 (385)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            888754

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.29  E-value=7e-07  Score=83.23  Aligned_cols=97  Identities=19%  Similarity=0.119  Sum_probs=73.0

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------C-CceEEEccCCCCC------CCC-cEEE
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------L-GIEHVGGDFFESV------PEA-DTIL  256 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-~v~~~~~D~~~~~------~~~-D~i~  256 (356)
                      +..+|||+|||+|.++..+++.. ..+++++|. +.+++.++++       + +++++.+|+++..      +.. |+|+
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            56899999999999999999864 458999996 7777766542       2 6889999987621      223 9999


Q ss_pred             ecccc--------cCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          257 MKWVL--------SSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       257 ~~~vl--------h~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      +.-..        +... .....++.++.+.|+|||.+++...
T Consensus       299 ~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGAC-RGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             ECCSSTTTCSSSSSCCC-THHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ECCCCCCCChhHHHHHH-HHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            85321        1111 3478999999999999999998653

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.29  E-value=7.3e-07  Score=88.86  Aligned_cols=98  Identities=17%  Similarity=0.136  Sum_probs=72.6

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCC--C-CCC-cEEEecc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFES--V-PEA-DTILMKW  259 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~--~-~~~-D~i~~~~  259 (356)
                      +..+|||+|||+|.++..++.... .+++++|. +.+++.++++        ++++++.+|+++.  . ... |+|++.-
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP  617 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP  617 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence            568999999999999999887432 36999996 7777777542        3799999998872  2 233 9999843


Q ss_pred             ccc--------CCC-hHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          260 VLS--------SFD-DEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       260 vlh--------~~~-~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      .-.        .+. ..+...+++.+.++|+|||+|++...
T Consensus       618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~  658 (703)
T 3v97_A          618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN  658 (703)
T ss_dssp             CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            211        111 13567899999999999999997543

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.28  E-value=1.1e-06  Score=76.52  Aligned_cols=91  Identities=11%  Similarity=0.095  Sum_probs=63.3

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCC--
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPE--  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~--  251 (356)
                      ....+++.+. ..+..+|||||||+|.++. +. +.+..+++++|. +.+++.++++    ++++++.+|+.+ ++++  
T Consensus         9 i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~   85 (252)
T 1qyr_A            9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA   85 (252)
T ss_dssp             HHHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred             HHHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence            3456677666 6777899999999999999 64 445444899996 8888777654    479999999987 5432  


Q ss_pred             ----CcEEEecccccCCChHHHHHHH
Q 018405          252 ----ADTILMKWVLSSFDDEQSLKLL  273 (356)
Q Consensus       252 ----~D~i~~~~vlh~~~~~~~~~~L  273 (356)
                          .+.+++.+.-++.+.+-..++|
T Consensus        86 ~~~~~~~~vvsNlPY~i~~~il~~ll  111 (252)
T 1qyr_A           86 EKMGQPLRVFGNLPYNISTPLMFHLF  111 (252)
T ss_dssp             HHHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred             cccCCceEEEECCCCCccHHHHHHHH
Confidence                2345556666666544444444

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.27  E-value=3.6e-06  Score=72.81  Aligned_cols=112  Identities=15%  Similarity=0.077  Sum_probs=68.7

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccch-HHHHhCCCC----CCceEEEccCCC-CCCC--
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLP-YVIKNAPSY----LGIEHVGGDFFE-SVPE--  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~----~~v~~~~~D~~~-~~~~--  251 (356)
                      .+.++.+... +++..+|||+|||.|.++...++..+-..+.++|.. .........    .++.....++.. .++.  
T Consensus        62 KL~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~  140 (277)
T 3evf_A           62 KLRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVK  140 (277)
T ss_dssp             HHHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCC
T ss_pred             HHHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCC
Confidence            3455555533 777889999999999999988876554455555542 111111111    134445555433 3333  


Q ss_pred             CcEEEeccccc---CCChH-HHHHHHHHHHHhCCCC-CEEEEEeccc
Q 018405          252 ADTILMKWVLS---SFDDE-QSLKLLKNCYKALPDG-GKLLNVNVTI  293 (356)
Q Consensus       252 ~D~i~~~~vlh---~~~~~-~~~~~L~~~~~~L~pg-G~lii~e~~~  293 (356)
                      .|+|++-...+   ++.|+ ....+|+.+.+.|+|| |.+++ ..+.
T Consensus       141 ~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~  186 (277)
T 3evf_A          141 CDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLA  186 (277)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESC
T ss_pred             ccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecC
Confidence            39999976444   22222 2235789999999999 99988 4433

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.26  E-value=3.6e-07  Score=80.69  Aligned_cols=69  Identities=19%  Similarity=0.276  Sum_probs=54.7

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC--CeEEEccc-hHHHHhCCCC--CCceEEEccCCC-CCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR--IKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE-SVP  250 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~  250 (356)
                      ...+++.+. ..+..+|||||||+|.++..+++..+.  .+++++|. +.+++.++++  ++++++.+|+.+ +++
T Consensus        31 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           31 IDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG  105 (279)
T ss_dssp             HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred             HHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence            355666666 677889999999999999999998654  45888885 7777777653  689999999987 544

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.25  E-value=1.5e-06  Score=84.58  Aligned_cols=125  Identities=18%  Similarity=0.115  Sum_probs=78.1

Q ss_pred             hhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-------------CCCeEEE
Q 018405          156 YDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-------------PRIKGIN  222 (356)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~~  222 (356)
                      |+-+.+|+-.-..|.+++.       ..+.+...+-.+...|||||||+|.++...+.+.             ...++++
T Consensus       379 Ye~fekD~vRy~~Y~~AI~-------~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyA  451 (745)
T 3ua3_A          379 YNTFEQDQIKYDVYGEAVV-------GALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI  451 (745)
T ss_dssp             HHHHHHCHHHHHHHHHHHH-------HHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred             HHHHcCChhhHHHHHHHHH-------HHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEE
Confidence            4445555554445544442       2222322211235689999999999965432221             2347888


Q ss_pred             ccc-hHHHHhCCC------CCCceEEEccCCC-CC------CC-CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEE
Q 018405          223 YDL-PYVIKNAPS------YLGIEHVGGDFFE-SV------PE-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLL  287 (356)
Q Consensus       223 ~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~------~~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~li  287 (356)
                      ++- +..+...+.      .++|+++.+|+.+ ..      ++ .|+|++-..-.....|-....|..+.+.|+|||.++
T Consensus       452 VEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          452 VEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             EECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             EeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            885 433322211      1679999999998 44      44 499998777665555556678888889999999754

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.23  E-value=1.2e-06  Score=77.17  Aligned_cols=99  Identities=20%  Similarity=0.208  Sum_probs=74.2

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-----------CCCceEEEccCCCCC--C-CC-cEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-----------YLGIEHVGGDFFESV--P-EA-DTI  255 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~--~-~~-D~i  255 (356)
                      ..+.+||-||+|.|..++++++..|..+++.+|+ +.+++.+++           .+|++++.+|...-.  . +. |+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            4679999999999999999998777778888886 888876643           279999999998732  2 23 999


Q ss_pred             EecccccCCChH--HHHHHHHHHHHhCCCCCEEEEEe
Q 018405          256 LMKWVLSSFDDE--QSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       256 ~~~~vlh~~~~~--~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +.-..=-.-+.+  -...+++.|+++|+|||.++..-
T Consensus       162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence            864321110100  12578999999999999999864

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.22  E-value=1.2e-06  Score=76.38  Aligned_cols=68  Identities=15%  Similarity=0.239  Sum_probs=54.2

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCceEEEccCCC-CCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIEHVGGDFFE-SVP  250 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~  250 (356)
                      ....+++.+. ..+..+|||||||+|.++..++++.  .+++++|. +.+++.+++    .++++++.+|+.+ +++
T Consensus        17 i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~   90 (255)
T 3tqs_A           17 VLQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS   90 (255)
T ss_dssp             HHHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred             HHHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence            3456777676 7778899999999999999999875  57888886 777776654    3689999999988 553

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.20  E-value=2.4e-06  Score=80.12  Aligned_cols=90  Identities=16%  Similarity=0.092  Sum_probs=66.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC-CCcEEEecccccC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP-EADTILMKWVLSS  263 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~D~i~~~~vlh~  263 (356)
                      .+..+|||+|||+|.++..+++.  ..+++++|. +.+++.|+++      + ++++.+|+.+..+ ..|+|++.-.-..
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g  365 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG  365 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred             CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence            36689999999999999999986  458999996 8888877643      3 8999999988433 3499998433221


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      ..    ..+++.+. .|+|+|.+++.
T Consensus       366 ~~----~~~~~~l~-~l~p~givyvs  386 (425)
T 2jjq_A          366 LH----PRLVKRLN-REKPGVIVYVS  386 (425)
T ss_dssp             SC----HHHHHHHH-HHCCSEEEEEE
T ss_pred             hH----HHHHHHHH-hcCCCcEEEEE
Confidence            11    23555554 48999988884

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.99  E-value=5.4e-06  Score=73.90  Aligned_cols=77  Identities=25%  Similarity=0.287  Sum_probs=60.5

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-C--C---
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-S--V---  249 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~--~---  249 (356)
                      ..+++.+. ..+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++     ++++++.+|+.+ +  .   
T Consensus        16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~   94 (301)
T 1m6y_A           16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL   94 (301)
T ss_dssp             HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence            45556665 66778999999999999999999999889999996 8888776542     589999999876 3  1   


Q ss_pred             --CCCcEEEecc
Q 018405          250 --PEADTILMKW  259 (356)
Q Consensus       250 --~~~D~i~~~~  259 (356)
                        ...|.|++..
T Consensus        95 g~~~~D~Vl~D~  106 (301)
T 1m6y_A           95 GIEKVDGILMDL  106 (301)
T ss_dssp             TCSCEEEEEEEC
T ss_pred             CCCCCCEEEEcC
Confidence              1238888743

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.92  E-value=1.4e-05  Score=69.20  Aligned_cols=109  Identities=17%  Similarity=0.131  Sum_probs=68.9

Q ss_pred             HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCce-EEEc-cCCCCCC-
Q 018405          179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIE-HVGG-DFFESVP-  250 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~-~~~~-D~~~~~~-  250 (356)
                      ..+.++.+++. +.+..+|||+|||.|.++...++..+-..++++|+ ......+..    ..++. +... |+..-.+ 
T Consensus        77 fKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~  155 (282)
T 3gcz_A           77 AKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVI  155 (282)
T ss_dssp             HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCC
T ss_pred             HHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCC
Confidence            34566777764 78888999999999999999888776666777875 222112211    01222 2222 3333112 


Q ss_pred             CCcEEEeccccc----CCChHHHHHHHHHHHHhCCCC--CEEEE
Q 018405          251 EADTILMKWVLS----SFDDEQSLKLLKNCYKALPDG--GKLLN  288 (356)
Q Consensus       251 ~~D~i~~~~vlh----~~~~~~~~~~L~~~~~~L~pg--G~lii  288 (356)
                      ..|+|++-...+    ..+......+|+-+.+.|+||  |.+++
T Consensus       156 ~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~  199 (282)
T 3gcz_A          156 PGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI  199 (282)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             CcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence            239999865554    111112335788889999999  99888

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.90  E-value=3.1e-05  Score=69.31  Aligned_cols=102  Identities=14%  Similarity=0.104  Sum_probs=68.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCC----C-CcEEE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVP----E-ADTIL  256 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~----~-~D~i~  256 (356)
                      ..+..+|||+|||+|..+..+++.. +..+++++|. +..++.++++      .+++++.+|+.+ +..    . .|.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            5677899999999999999999875 5578999996 7766655432      578999999876 221    2 39998


Q ss_pred             ec------ccccCCCh---------HH-------HHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          257 MK------WVLSSFDD---------EQ-------SLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       257 ~~------~vlh~~~~---------~~-------~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      +-      .++...+|         ++       ..++|+++.+.++ ||+|+......
T Consensus       180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence            61      22222111         11       1357888888776 89877755443

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=97.90  E-value=0.00035  Score=62.93  Aligned_cols=145  Identities=15%  Similarity=0.146  Sum_probs=102.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHh-CCCCeEEEccchHHHHhCC-----------------------------CCCCceEEE
Q 018405          193 HVKKLVDVGGGLGATLNMIISK-YPRIKGINYDLPYVIKNAP-----------------------------SYLGIEHVG  242 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~~v~~~~  242 (356)
                      +...|+-+|||.=....++... .++++++-+|+|++++.-+                             ..++..++.
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~  169 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG  169 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence            4679999999999998888875 4688999999988765311                             135788999


Q ss_pred             ccCCC--C---------CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhh
Q 018405          243 GDFFE--S---------VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISIL  309 (356)
Q Consensus       243 ~D~~~--~---------~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~  309 (356)
                      .|+.+  .         ++..  -++++-.+|.+++.++..++|+.+.+... +|.+++.|.+.+.+       .+...+
T Consensus       170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d-------~fg~~M  241 (334)
T 3iei_A          170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGD-------RFGQIM  241 (334)
T ss_dssp             CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTS-------HHHHHH
T ss_pred             cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCC-------HHHHHH
Confidence            99976  1         2222  68899999999999999999999998874 56777889886542       111111


Q ss_pred             hhhhhhh-c--CC-CccCCHHHHHHHHHHcCCcceeEEEc
Q 018405          310 DTICLFQ-V--PH-GRERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       310 ~~~~~~~-~--~~-~~~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                      --.+-.. .  .+ ....+.++..+.|.++||+.+++..+
T Consensus       242 ~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~  281 (334)
T 3iei_A          242 IENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM  281 (334)
T ss_dssp             HHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred             HHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence            1111000 0  01 12357888999999999998876654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.89  E-value=2.2e-05  Score=78.22  Aligned_cols=113  Identities=15%  Similarity=0.014  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC------------------------------------------
Q 018405          178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY------------------------------------------  215 (356)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~------------------------------------------  215 (356)
                      ...+..++.... +.+..+|||.+||+|.++++.+...                                          
T Consensus       176 e~LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~  254 (703)
T 3v97_A          176 ETLAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE  254 (703)
T ss_dssp             HHHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence            345566666655 7788899999999999998877642                                          


Q ss_pred             CCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC----CCcEEEecccccC-C-ChHHHHHHHHHHHH--
Q 018405          216 PRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP----EADTILMKWVLSS-F-DDEQSLKLLKNCYK--  278 (356)
Q Consensus       216 p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~----~~D~i~~~~vlh~-~-~~~~~~~~L~~~~~--  278 (356)
                      +..+++++|. +.+++.|+.+       +.+++..+|+.+ ..|    ..|+|+++--... + .+++...+.+.+.+  
T Consensus       255 ~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~l  334 (703)
T 3v97_A          255 YSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIM  334 (703)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHH
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHH
Confidence            3357999996 8888877653       358999999987 333    2399999733221 1 22344555554444  


Q ss_pred             -hCCCCCEEEEEec
Q 018405          279 -ALPDGGKLLNVNV  291 (356)
Q Consensus       279 -~L~pgG~lii~e~  291 (356)
                       .+.|||+++|+..
T Consensus       335 k~~~~g~~~~ilt~  348 (703)
T 3v97_A          335 KNQFGGWNLSLFSA  348 (703)
T ss_dssp             HHHCTTCEEEEEES
T ss_pred             HhhCCCCeEEEEeC
Confidence             4458999999754

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.88  E-value=2.5e-06  Score=78.67  Aligned_cols=98  Identities=13%  Similarity=0.067  Sum_probs=66.8

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC---CC-
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES---VP-  250 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~~-  250 (356)
                      ..+++.+. .. ..+|||+|||+|.++..+++..  .+++++|. +.+++.|+.+      ++++++.+|..+.   .+ 
T Consensus       204 ~~~~~~~~-~~-~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~  279 (369)
T 3bt7_A          204 EWALDVTK-GS-KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG  279 (369)
T ss_dssp             HHHHHHTT-TC-CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSS
T ss_pred             HHHHHHhh-cC-CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhh
Confidence            44445444 33 4789999999999999888743  47999996 8887777542      5789999998651   11 


Q ss_pred             ---------------CCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          251 ---------------EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       251 ---------------~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                                     ..|+|++.-     |.   ..+.+++.+.|+|+|+++.+..
T Consensus       280 ~~~~~~l~~~~~~~~~fD~Vv~dP-----Pr---~g~~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          280 VREFNRLQGIDLKSYQCETIFVDP-----PR---SGLDSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             CCCCTTGGGSCGGGCCEEEEEECC-----CT---TCCCHHHHHHHTTSSEEEEEES
T ss_pred             ccccccccccccccCCCCEEEECc-----Cc---cccHHHHHHHHhCCCEEEEEEC
Confidence                           238888632     11   1234456666778898888653

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.87  E-value=1.9e-05  Score=68.84  Aligned_cols=99  Identities=14%  Similarity=0.145  Sum_probs=67.6

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-h-------HHHHhCCCC-------CCceEEEccCCCC---CC--
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-P-------YVIKNAPSY-------LGIEHVGGDFFES---VP--  250 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~~-------~~v~~~~~D~~~~---~~--  250 (356)
                      ..+..+|||+|||+|..+..++..  +.+++++|. +       .+++.++.+       ++++++.+|..+.   ++  
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~  158 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT  158 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence            445679999999999999999985  568999996 7       777776543       4699999998762   33  


Q ss_pred             -C-CcEEEecccccCCC------------------hHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          251 -E-ADTILMKWVLSSFD------------------DEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       251 -~-~D~i~~~~vlh~~~------------------~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                       . .|+|++.-.+++-.                  +.+...+++.+.++.+  .+++|-.+..
T Consensus       159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~  219 (258)
T 2r6z_A          159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL  219 (258)
T ss_dssp             HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred             CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence             3 39999966554421                  1234556666777654  3666655543

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.84  E-value=1.9e-05  Score=68.77  Aligned_cols=96  Identities=18%  Similarity=0.222  Sum_probs=62.0

Q ss_pred             CCceEEEEcCCccHHHHHHHHh-------CCC-----CeEEEccc-h---HHHHhC-----------C------------
Q 018405          193 HVKKLVDVGGGLGATLNMIISK-------YPR-----IKGINYDL-P---YVIKNA-----------P------------  233 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~a-----------~------------  233 (356)
                      +..+|||||+|+|..+..+++.       .|+     ++++.++. |   +.+..+           +            
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4579999999999988887664       674     57888884 4   222211           0            


Q ss_pred             --------CCCCceEEEccCCC--C-CCC----C-cEEEecc-cccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          234 --------SYLGIEHVGGDFFE--S-VPE----A-DTILMKW-VLSSFDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       234 --------~~~~v~~~~~D~~~--~-~~~----~-D~i~~~~-vlh~~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                              ...+++++.+|..+  + .+.    . |+|++-. .-..-|+=-...+|+.+++.|+|||.|+.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                    11346788899765  2 222    3 9998732 11101110136899999999999999885

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.79  E-value=1.6e-05  Score=73.27  Aligned_cols=92  Identities=12%  Similarity=-0.025  Sum_probs=69.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---------------------CCceEEEccCCCC--
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---------------------LGIEHVGGDFFES--  248 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~~v~~~~~D~~~~--  248 (356)
                      +..+|||+|||+|..+..++++.+..+++++|. +..++.++++                     .+++++.+|....  
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            467999999999999999999988888999996 7766655432                     1378888998652  


Q ss_pred             -CCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          249 -VPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       249 -~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                       .+.. |+|++-- ..     ....+|..+.+.|+|||.+++..
T Consensus       127 ~~~~~fD~I~lDP-~~-----~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLDP-FG-----SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEECC-SS-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCCCEEEeCC-CC-----CHHHHHHHHHHhcCCCCEEEEEe
Confidence             2333 9998532 11     13688999999999999887754

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.73  E-value=2.3e-05  Score=75.80  Aligned_cols=110  Identities=15%  Similarity=0.086  Sum_probs=75.9

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC------------------CCeEEEccc-hHHHHhCCCC------
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP------------------RIKGINYDL-PYVIKNAPSY------  235 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~~------  235 (356)
                      +..+++.+. ..+..+|+|.|||+|.++..+.+...                  ...++++|+ +.+++.|+.+      
T Consensus       158 v~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi  236 (541)
T 2ar0_A          158 IKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI  236 (541)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC
Confidence            344455554 45667999999999999988876532                  236899996 7776665421      


Q ss_pred             CC-----ceEEEccCCC-C-CC--CCcEEEecccccCCCh------------HHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          236 LG-----IEHVGGDFFE-S-VP--EADTILMKWVLSSFDD------------EQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       236 ~~-----v~~~~~D~~~-~-~~--~~D~i~~~~vlh~~~~------------~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      ..     +.+..+|.+. + .+  ..|+|+++-.+.....            .....++.++.+.|+|||++.++-+
T Consensus       237 ~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          237 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence            32     7889999887 3 22  2399998654443211            1234789999999999999998743

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.67  E-value=1.1e-05  Score=90.68  Aligned_cols=142  Identities=15%  Similarity=0.089  Sum_probs=64.3

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCC-----CeEEEccc-hHHHHhCCCC-C--CceEEEccCCCC---CCCC-cEEEecc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPR-----IKGINYDL-PYVIKNAPSY-L--GIEHVGGDFFES---VPEA-DTILMKW  259 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-~--~v~~~~~D~~~~---~~~~-D~i~~~~  259 (356)
                      +..+|||||+|+|..+..+++....     .+++..|. +...+.+++. .  .++....|..++   .++. |+|++.+
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence            5679999999999887777766532     35666675 4444444433 1  122211233222   1233 9999999


Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcc
Q 018405          260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKG  339 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~  339 (356)
                      +||..+  +....|++++++|+|||++++.+......        +.....+.-..........+.++|.++|+++||+.
T Consensus      1320 vl~~t~--~~~~~l~~~~~lL~p~G~l~~~e~~~~~~--------~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A         1320 ALATLG--DPAVAVGNMAATLKEGGFLLLHTLLAGHP--------LGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp             C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred             cccccc--cHHHHHHHHHHhcCCCcEEEEEecccccc--------ccccccccccccccCCcccCHHHHHHHHHhCCCce
Confidence            999764  36889999999999999999988643110        00000000000000122346789999999999988


Q ss_pred             eeEEE
Q 018405          340 VNYEY  344 (356)
Q Consensus       340 ~~~~~  344 (356)
                      +....
T Consensus      1390 ~~~~~ 1394 (2512)
T 2vz8_A         1390 VALKR 1394 (2512)
T ss_dssp             EEEEE
T ss_pred             eeecc
Confidence            76543

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.67  E-value=0.00013  Score=66.03  Aligned_cols=95  Identities=11%  Similarity=0.035  Sum_probs=64.9

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChH
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDE  267 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~  267 (356)
                      +++..++||+||++|.++..++++  +.+++++|...+.......++|+++.+|.+. ..+..  |+|+|-.+.+   ..
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~  283 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA  283 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence            567899999999999999999986  5789999964433333345799999999998 33333  9998866543   13


Q ss_pred             HHHHHHHHHHHhCCCCCEEEEEe
Q 018405          268 QSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       268 ~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      ....++.+.......++.++.+.
T Consensus       284 ~~~~l~~~wl~~~~~~~aI~~lK  306 (375)
T 4auk_A          284 KVAALMAQWLVNGWCRETIFNLK  306 (375)
T ss_dssp             HHHHHHHHHHHTTSCSEEEEEEE
T ss_pred             HhHHHHHHHHhccccceEEEEEE
Confidence            34444444444444445554444

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.65  E-value=1.9e-05  Score=72.85  Aligned_cols=92  Identities=13%  Similarity=0.003  Sum_probs=69.9

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC-------CC-ceEEEccCCC--C--CCCC-cEEEe
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY-------LG-IEHVGGDFFE--S--VPEA-DTILM  257 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~D~~~--~--~~~~-D~i~~  257 (356)
                      +..+|||++||+|.++..++.+.++ .+++++|. +..++.++++       ++ ++++.+|.++  .  .+.. |+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            5689999999999999999998766 47899996 7777766543       33 8899999865  2  2223 99988


Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      --  +..    ...++..+.++|+|||.|++..
T Consensus       132 DP--~g~----~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          132 DP--FGT----PVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CC--SSC----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC--CcC----HHHHHHHHHHHhCCCCEEEEEe
Confidence            54  111    2468899999999999887755

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.55  E-value=0.00042  Score=60.43  Aligned_cols=108  Identities=16%  Similarity=0.109  Sum_probs=66.3

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccch-HHHHhCCC----CCCc-eEEEc-cCCCCCC-C
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLP-YVIKNAPS----YLGI-EHVGG-DFFESVP-E  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~v-~~~~~-D~~~~~~-~  251 (356)
                      .+..+.+. .-+.+..+|||+||++|.++..+++..+-..++++|+. ........    ..++ .+..+ |+..-.+ .
T Consensus        69 KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~  147 (300)
T 3eld_A           69 KIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEP  147 (300)
T ss_dssp             HHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCC
T ss_pred             HHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCC
Confidence            34455555 43667899999999999999999987655567777752 11111110    0122 23322 4443222 2


Q ss_pred             CcEEEecccccCCCh---H--HHHHHHHHHHHhCCCC-CEEEEE
Q 018405          252 ADTILMKWVLSSFDD---E--QSLKLLKNCYKALPDG-GKLLNV  289 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~---~--~~~~~L~~~~~~L~pg-G~lii~  289 (356)
                      .|+|++-..-+ -..   +  ....+|+-+.+.|+|| |.+++-
T Consensus       148 ~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          148 SDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             CSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             cCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            39999855544 221   1  2346788889999999 998884

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.48  E-value=6.7e-05  Score=72.45  Aligned_cols=109  Identities=14%  Similarity=0.120  Sum_probs=72.2

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC---------------CCeEEEccc-hHHHHhCCCC-------C
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP---------------RIKGINYDL-PYVIKNAPSY-------L  236 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~~-------~  236 (356)
                      .+..+++.+. . ...+|+|.+||+|.++..+.+..+               ...+.++|+ +.+++.|+.+       .
T Consensus       233 Vv~lmv~ll~-p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~  310 (544)
T 3khk_A          233 IVTLIVEMLE-P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF  310 (544)
T ss_dssp             HHHHHHHHHC-C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHh-c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence            3445555554 3 335999999999999988765432               567899996 7777666432       2


Q ss_pred             CceEEEccCCC-C-CCC-C-cEEEeccccc--CCChH-------------------------HHHHHHHHHHHhCCCCCE
Q 018405          237 GIEHVGGDFFE-S-VPE-A-DTILMKWVLS--SFDDE-------------------------QSLKLLKNCYKALPDGGK  285 (356)
Q Consensus       237 ~v~~~~~D~~~-~-~~~-~-D~i~~~~vlh--~~~~~-------------------------~~~~~L~~~~~~L~pgG~  285 (356)
                      ++.+..+|.+. + .+. . |+|+++--..  .|..+                         ....+++.+.+.|+|||+
T Consensus       311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr  390 (544)
T 3khk_A          311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS  390 (544)
T ss_dssp             BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred             ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence            34447888776 3 222 2 9999854333  12211                         112689999999999999


Q ss_pred             EEEEe
Q 018405          286 LLNVN  290 (356)
Q Consensus       286 lii~e  290 (356)
                      +.++-
T Consensus       391 ~aiVl  395 (544)
T 3khk_A          391 MALLL  395 (544)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88864

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.42  E-value=0.00036  Score=69.25  Aligned_cols=100  Identities=12%  Similarity=0.075  Sum_probs=66.6

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCC---CCeEEEccc-hHHHHhC--C----C----C--CCceEEEccCCCCC--C-C-
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYP---RIKGINYDL-PYVIKNA--P----S----Y--LGIEHVGGDFFESV--P-E-  251 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~----~----~--~~v~~~~~D~~~~~--~-~-  251 (356)
                      .+..+|+|.|||+|.++..+++..+   ..++.++|+ +.+++.|  +    .    .  +...+...|+..+.  + . 
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k  399 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN  399 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence            3568999999999999999998876   357889996 6665555  1    1    1  22355556666521  2 2 


Q ss_pred             CcEEEecccccC-CC-hHH-------------------------HHHHHHHHHHhCCCCCEEEEEec
Q 018405          252 ADTILMKWVLSS-FD-DEQ-------------------------SLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       252 ~D~i~~~~vlh~-~~-~~~-------------------------~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      .|+|+++--.-. +. +..                         ...+++++.+.|+|||++.++-+
T Consensus       400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP  466 (878)
T 3s1s_A          400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP  466 (878)
T ss_dssp             EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence            299998544411 11 111                         23478889999999999998654

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.40  E-value=0.0005  Score=57.76  Aligned_cols=113  Identities=18%  Similarity=0.164  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHh---CCC--CCCceEEEc-cCCC-CCC
Q 018405          179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKN---APS--YLGIEHVGG-DFFE-SVP  250 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~--~~~v~~~~~-D~~~-~~~  250 (356)
                      ..+..+.+.+. +++..+|||+||++|.++...+....-.++.++|. +.-.+.   .+.  .+.|+|..+ |++. +..
T Consensus        65 ~KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~  143 (267)
T 3p8z_A           65 AKLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPE  143 (267)
T ss_dssp             HHHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCC
T ss_pred             HHHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCc
Confidence            34566777774 78888999999999999998887765557899996 222221   111  267999999 9776 322


Q ss_pred             CCcEEEecccccCCC---hH-HHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          251 EADTILMKWVLSSFD---DE-QSLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       251 ~~D~i~~~~vlh~~~---~~-~~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                      ..|+|+|--.=-.-+   ++ ...++|.-+.+.|++ |-+++ -.+.+
T Consensus       144 ~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~-KVl~p  189 (267)
T 3p8z_A          144 KCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI-KVLNP  189 (267)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE-EESCC
T ss_pred             cccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE-EEccC
Confidence            249998832221111   11 123577777899998 66666 33333

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.38  E-value=0.00049  Score=60.44  Aligned_cols=95  Identities=17%  Similarity=0.106  Sum_probs=66.5

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhC-----CCCeEEEccc-hH--------------------------HHHhCC------
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKY-----PRIKGINYDL-PY--------------------------VIKNAP------  233 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~--------------------------~~~~a~------  233 (356)
                      ..+++|||||+..|..+..++...     ++.+++++|. +.                          ..+.++      
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            457899999999999998887654     4778888882 11                          011111      


Q ss_pred             -C-CCCceEEEccCCCC---CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          234 -S-YLGIEHVGGDFFES---VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       234 -~-~~~v~~~~~D~~~~---~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                       - .++|+++.||+.+.   .+..  |+|++=.-.+    +.....|+.+...|+|||.+++-+
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD  244 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDD  244 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcC
Confidence             1 26899999998762   2222  7877754322    346789999999999999888733

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.34  E-value=0.00013  Score=66.33  Aligned_cols=96  Identities=19%  Similarity=0.135  Sum_probs=68.7

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------------CCceEEEccCCCC------CCC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------------LGIEHVGGDFFES------VPE  251 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~~------~~~  251 (356)
                      ++.+||-||+|.|..++++++. |..+++.+|+ |.+++.+++.              +|++++.+|...-      ...
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            5689999999999999999975 5568888886 8888766431              4688999997641      112


Q ss_pred             -CcEEEecccccC-------CC-hHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          252 -ADTILMKWVLSS-------FD-DEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       252 -~D~i~~~~vlh~-------~~-~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                       .|+|+.-..=..       .. ..-...+++.++++|+|||.++..
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence             299987422110       00 011357889999999999998874

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.34  E-value=6.7e-05  Score=65.22  Aligned_cols=76  Identities=11%  Similarity=0.160  Sum_probs=53.4

Q ss_pred             HHHhcCCCCC--ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH-------HHhCCC-------C-CCceEEEccCC
Q 018405          185 LESYKGFEHV--KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV-------IKNAPS-------Y-LGIEHVGGDFF  246 (356)
Q Consensus       185 ~~~~~~~~~~--~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-------~-~~v~~~~~D~~  246 (356)
                      .+.+. +++.  .+|||+|||+|..+..++.+  +.+++++|. +.+       ++.++.       . .+++++.+|..
T Consensus        79 ~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~  155 (258)
T 2oyr_A           79 AKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (258)
T ss_dssp             HHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred             HHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHH
Confidence            33343 5555  89999999999999999987  457999996 543       333321       1 46899999986


Q ss_pred             C---CCCCC-cEEEecccccC
Q 018405          247 E---SVPEA-DTILMKWVLSS  263 (356)
Q Consensus       247 ~---~~~~~-D~i~~~~vlh~  263 (356)
                      +   ..++. |+|++--..++
T Consensus       156 ~~L~~~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          156 TALTDITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             HHSTTCSSCCSEEEECCCCCC
T ss_pred             HHHHhCcccCCEEEEcCCCCC
Confidence            5   23333 99999766654

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.33  E-value=0.001  Score=56.78  Aligned_cols=106  Identities=20%  Similarity=0.176  Sum_probs=63.6

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh--CCCCe--EEEccchHHHHhCCCC-CCc---eEEEc-cCCCCCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK--YPRIK--GINYDLPYVIKNAPSY-LGI---EHVGG-DFFESVP  250 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~p~~~--~~~~D~~~~~~~a~~~-~~v---~~~~~-D~~~~~~  250 (356)
                      .+.+|-++. -+++..+|||+||+.|.++...++.  ...+.  ++++|. . +...... .++   .+..+ |+++..+
T Consensus        61 KL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~~G~Df~~~~~  137 (269)
T 2px2_A           61 KLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMKSGVDVFYKPS  137 (269)
T ss_dssp             HHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTGGGEEEECSCCGGGSCC
T ss_pred             HHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCceEEEeeccCCccCCCC
Confidence            345666665 3788999999999999999988875  21112  234442 1 1111111 355   44447 9988434


Q ss_pred             C-CcEEEecc---cccCCChH-HHHHHHHHHHHhCCCCC-EEEE
Q 018405          251 E-ADTILMKW---VLSSFDDE-QSLKLLKNCYKALPDGG-KLLN  288 (356)
Q Consensus       251 ~-~D~i~~~~---vlh~~~~~-~~~~~L~~~~~~L~pgG-~lii  288 (356)
                      . .|+|+|-.   +-+...|. ....+|.-+.+.|+||| .+++
T Consensus       138 ~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv  181 (269)
T 2px2_A          138 EISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCI  181 (269)
T ss_dssp             CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence            3 49998732   21111121 12246777889999999 7777

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.31  E-value=0.00068  Score=65.31  Aligned_cols=99  Identities=19%  Similarity=0.115  Sum_probs=70.0

Q ss_pred             CCceEEEEcCCccHHHHHHHHhC---CCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCC-CCC---C--CcE
Q 018405          193 HVKKLVDVGGGLGATLNMIISKY---PRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFE-SVP---E--ADT  254 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~~~---~--~D~  254 (356)
                      +..+|+|.+||+|.++..+.+..   +...+.++|+ +.+.+.|+.+        +++.+..+|.+. ++|   .  .|+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            56799999999999999988875   3568899996 7766666432        356789999887 433   2  299


Q ss_pred             EEeccccc-CCCh--------------------HHHHHHHHHHHHhCC-CCCEEEEEec
Q 018405          255 ILMKWVLS-SFDD--------------------EQSLKLLKNCYKALP-DGGKLLNVNV  291 (356)
Q Consensus       255 i~~~~vlh-~~~~--------------------~~~~~~L~~~~~~L~-pgG~lii~e~  291 (356)
                      |+++--.. .|..                    ..-..++.++.+.|+ |||++.++-+
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP  359 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP  359 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence            99752221 1110                    001358999999999 9999988653

>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}

Probab=97.28  E-value=0.00034  Score=52.17  Aligned_cols=64  Identities=16%  Similarity=0.250  Sum_probs=52.6

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhC--CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhhhCC
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQI--PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNN  111 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~--~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~  111 (356)
                      +..|++.|.+.   |+.|+.+||+.+  +++      +. .+++.|+.|...|+|+..   +.+.|++|+.+..+....
T Consensus        15 d~~IL~~L~~~---g~~s~~eLA~~l~~giS------~~-aVs~rL~~Le~~GLV~~~---~rg~Y~LT~~G~~~l~~~   80 (111)
T 3b73_A           15 DDRILEIIHEE---GNGSPKELEDRDEIRIS------KS-SVSRRLKKLADHDLLQPL---ANGVYVITEEGEAYLNGE   80 (111)
T ss_dssp             HHHHHHHHHHH---SCBCHHHHHTSTTCCSC------HH-HHHHHHHHHHHTTSEEEC---STTCEEECHHHHHHHTTC
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHhcCCC------HH-HHHHHHHHHHHCCCEEec---CCceEEECchHHHHHHHH
Confidence            45577888764   599999999999  997      77 999999999999999953   346999999998555443

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.25  E-value=0.00095  Score=55.49  Aligned_cols=88  Identities=10%  Similarity=0.030  Sum_probs=59.6

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC---------CCCceEEEccCCCC--------------
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS---------YLGIEHVGGDFFES--------------  248 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~~--------------  248 (356)
                      +..+|||||||  ..+..+++ .++.+++.+|. +...+.+++         .++|+++.+|..+.              
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~  106 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS  106 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred             CCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence            56899999984  66666666 45778888884 666555542         34689999985431              


Q ss_pred             ----------CC--C-CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          249 ----------VP--E-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       249 ----------~~--~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                                .+  . .|+|++-.-       .....+..+.+.|+|||.|++-+
T Consensus       107 l~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          107 YPDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             TTHHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSSCEEEEETT
T ss_pred             HHHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCCCeEEEEeC
Confidence                      12  2 299998542       12355666778999999885533

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.24  E-value=0.0015  Score=56.69  Aligned_cols=108  Identities=19%  Similarity=0.194  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHH-HHh---CCCC--CCceEEEc-cCCC-CCC
Q 018405          179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYV-IKN---APSY--LGIEHVGG-DFFE-SVP  250 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~-~~~---a~~~--~~v~~~~~-D~~~-~~~  250 (356)
                      ..+..+.+.+. +++..+|||+||++|.++...+....-.++.++|.... .+.   .++.  .-|.+..+ |++. +..
T Consensus        81 ~KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~  159 (321)
T 3lkz_A           81 AKLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSE  159 (321)
T ss_dssp             HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCC
T ss_pred             HHHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCC
Confidence            34556666655 77888999999999999997777655557899996221 111   1111  34788888 8766 322


Q ss_pred             CCcEEEecccccCCChHH-----HHHHHHHHHHhCCCC-CEEEE
Q 018405          251 EADTILMKWVLSSFDDEQ-----SLKLLKNCYKALPDG-GKLLN  288 (356)
Q Consensus       251 ~~D~i~~~~vlh~~~~~~-----~~~~L~~~~~~L~pg-G~lii  288 (356)
                      ..|+|+|--. .--+.+.     ..++|.-+.+.|++| |-+++
T Consensus       160 ~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~  202 (321)
T 3lkz_A          160 CCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV  202 (321)
T ss_dssp             CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence            3499887444 3223221     234777778999988 77766

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.23  E-value=0.00037  Score=54.20  Aligned_cols=84  Identities=18%  Similarity=0.094  Sum_probs=58.1

Q ss_pred             CCceEEEEcCCcc-HHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCC----CCcEEEecccccCCCh
Q 018405          193 HVKKLVDVGGGLG-ATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVP----EADTILMKWVLSSFDD  266 (356)
Q Consensus       193 ~~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~----~~D~i~~~~vlh~~~~  266 (356)
                      ...+|||||||.| ..+..|++. .+..++++|+ |..         +.++..|++++..    .+|+|...+-    | 
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~A---------v~~v~dDiF~P~~~~Y~~~DLIYsirP----P-   99 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSH---------GGIVRDDITSPRMEIYRGAALIYSIRP----P-   99 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSS---------TTEECCCSSSCCHHHHTTEEEEEEESC----C-
T ss_pred             CCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccc---------cceEEccCCCCcccccCCcCEEEEcCC----C-
Confidence            5689999999999 588877764 4678999995 533         2389999999655    3399977554    2 


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          267 EQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       267 ~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      .+....+.++.+...  .-++|.-...
T Consensus       100 ~El~~~i~~lA~~v~--adliI~pL~~  124 (153)
T 2k4m_A          100 AEIHSSLMRVADAVG--ARLIIKPLTG  124 (153)
T ss_dssp             TTTHHHHHHHHHHHT--CEEEEECBTT
T ss_pred             HHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence            335556666666544  6777754443

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.23  E-value=0.0024  Score=57.02  Aligned_cols=144  Identities=11%  Similarity=0.026  Sum_probs=93.8

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC---------CCCceEEEccCCCCC---------C-CC-
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS---------YLGIEHVGGDFFESV---------P-EA-  252 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~---------~-~~-  252 (356)
                      +...||++|||-=....++.. .++++++-+|.|.+++..++         .++..++..|+.+.+         . .. 
T Consensus       102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P  180 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR  180 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred             CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence            456799999998888766652 12588999999987665432         256788999987621         1 11 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhh-hhh-hhh-----hcCCCcc-CC
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISIL-DTI-CLF-----QVPHGRE-RT  324 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~~~~-~t  324 (356)
                      -++++-.+||++++++...+|+.+.+.+.||+.+++ |.+.++..  .......... ... ...     ....... ++
T Consensus       181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~  257 (310)
T 2uyo_A          181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGD--EWREQMQLRFRRVSDALGFEQAVDVQELIYHDE  257 (310)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCS--HHHHHHHHHHHHHHC-----------CCTTCCT
T ss_pred             EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCc--chhHHHHHHHHHHHHHcCCcCCCCccccccCCC
Confidence            688899999999999999999999999988887666 55544321  0000000000 000 000     0001112 26


Q ss_pred             -HHHHHHHHHHcCCcce
Q 018405          325 -KQEYSELAIKAGFKGV  340 (356)
Q Consensus       325 -~~e~~~ll~~aGf~~~  340 (356)
                       .++..++|.+.||+.+
T Consensus       258 ~~~~~~~~f~~~G~~~~  274 (310)
T 2uyo_A          258 NRAVVADWLNRHGWRAT  274 (310)
T ss_dssp             TCCCHHHHHTTTTEEEE
T ss_pred             ChHHHHHHHHHCcCccc
Confidence             7899999999999987

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=97.05  E-value=0.00063  Score=49.49  Aligned_cols=62  Identities=18%  Similarity=0.144  Sum_probs=47.2

Q ss_pred             HHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           33 VVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        33 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      -.++.|+..|...   ++.|..|||+.+|++      +. .+.+.|+.|...|++..........|++++.+
T Consensus        24 ~~~~~il~~l~~~---~~~s~~ela~~l~is------~~-tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~   85 (99)
T 3cuo_A           24 PKRLLILCMLSGS---PGTSAGELTRITGLS------AS-ATSQHLARMRDEGLIDSQRDAQRILYSIKNEA   85 (99)
T ss_dssp             HHHHHHHHHHTTC---CSEEHHHHHHHHCCC------HH-HHHHHHHHHHHTTSEEEEECSSCEEEEECCHH
T ss_pred             hHHHHHHHHHHhC---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence            3456677777664   489999999999997      77 89999999999999996532222457776554

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.02  E-value=0.00036  Score=64.61  Aligned_cols=63  Identities=29%  Similarity=0.385  Sum_probs=49.4

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCC--C-C--CCcEEEe
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFES--V-P--EADTILM  257 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~--~-~--~~D~i~~  257 (356)
                      +..+|||+|||+|..+..+++.  ..+++++|. +.+++.++.+        ++++++.+|+.+.  . +  ..|+|++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence            4689999999999999998876  468999996 7777766532        4689999999873  2 1  3499988

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=96.99  E-value=0.00093  Score=46.71  Aligned_cols=64  Identities=16%  Similarity=0.275  Sum_probs=47.7

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK  105 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~  105 (356)
                      .+..|++.|.+.+++.+.|+.+||+++|++      .. -+++.|..|...|+|...+ ..++.|.+.+...
T Consensus        11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs------r~-tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~~~~   74 (81)
T 1qbj_A           11 QEQRILKFLEELGEGKATTAHDLSGKLGTP------KK-EINRVLYSLAKKGKLQKEA-GTPPLWKIAVSTQ   74 (81)
T ss_dssp             HHHHHHHHHHHHCTTCCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEES-SSSCEEEEC----
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEecC-CCCCeeEEeCcHH
Confidence            345577788776444479999999999997      67 8999999999999999654 2347888876554

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=96.93  E-value=0.00052  Score=46.25  Aligned_cols=55  Identities=16%  Similarity=0.372  Sum_probs=43.7

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      +..|++.|.+.+  .+.|..|||+.+|++      .. .+.+.+..|...|+|..   +..+.|+++
T Consensus        12 ~~~IL~~L~~~~--~~~s~~eLA~~lgls------r~-tv~~~l~~L~~~G~I~~---~~~G~y~lg   66 (67)
T 2heo_A           12 EQKILQVLSDDG--GPVAIFQLVKKCQVP------KK-TLNQVLYRLKKEDRVSS---PSPKYWSIG   66 (67)
T ss_dssp             HHHHHHHHHHHC--SCEEHHHHHHHHCSC------HH-HHHHHHHHHHHTTSEEE---EETTEEEEC
T ss_pred             HHHHHHHHHHcC--CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEec---CCCceEeeC
Confidence            445777886642  489999999999997      67 89999999999999874   224778764

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=96.92  E-value=0.001  Score=57.89  Aligned_cols=64  Identities=20%  Similarity=0.227  Sum_probs=51.7

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE  247 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~  247 (356)
                      ...+++.+. .++...+||.+||.|.++..++++  +.+++++|. |.+++.+++.  +|++++.+|+.+
T Consensus        11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~   77 (285)
T 1wg8_A           11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH   77 (285)
T ss_dssp             HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred             HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence            456777776 778899999999999999999998  679999996 7777655321  588899888865

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.88  E-value=0.0083  Score=59.81  Aligned_cols=147  Identities=15%  Similarity=0.096  Sum_probs=102.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCC--------CCeEEEccchHHHHhCCC------------------------------
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYP--------RIKGINYDLPYVIKNAPS------------------------------  234 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------  234 (356)
                      +...||-+|||.=....+|....|        +++++-+|+|++++.-++                              
T Consensus       107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~  186 (695)
T 2zwa_A          107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT  186 (695)
T ss_dssp             SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred             CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence            467899999999999999988755        788999999887543211                              


Q ss_pred             CCCceEEEccCCCC-----------C-CCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCc
Q 018405          235 YLGIEHVGGDFFES-----------V-PEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENS  300 (356)
Q Consensus       235 ~~~v~~~~~D~~~~-----------~-~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~  300 (356)
                      .++..++..|+.+.           + ...  -++++-.+|.+++.++..++|+.+.+ + |+|.+++.|.+.+......
T Consensus       187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~  264 (695)
T 2zwa_A          187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP  264 (695)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred             CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence            03678899999872           1 222  67888999999999999999999985 4 6889999998876432221


Q ss_pred             hhhhhhhhhhhhhhhh---cC-CCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405          301 ATSREISILDTICLFQ---VP-HGRERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       301 ~~~~~~~~~~~~~~~~---~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                          +...+--.+...   .. -....+.++..+.|.+.||+.+....+
T Consensus       265 ----f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~  309 (695)
T 2zwa_A          265 ----FSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM  309 (695)
T ss_dssp             ----HHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred             ----HHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence                111111111000   00 013357999999999999987766543

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=96.88  E-value=0.00099  Score=46.20  Aligned_cols=61  Identities=11%  Similarity=0.122  Sum_probs=48.4

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK  105 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~  105 (356)
                      +-.|++.|...   ||.|+.+||+.+|++     ... .+++.|..|...|+|.+.+.. ...|.+|+.+.
T Consensus        13 ~~~IL~~Lk~~---g~~ta~eiA~~Lgit-----~~~-aVr~hL~~Le~eGlV~~~~~g-RP~w~LT~~g~   73 (79)
T 1xmk_A           13 KEKICDYLFNV---SDSSALNLAKNIGLT-----KAR-DINAVLIDMERQGDVYRQGTT-PPIWHLTDKKR   73 (79)
T ss_dssp             HHHHHHHHHHT---CCEEHHHHHHHHCGG-----GHH-HHHHHHHHHHHTTSEEEECSS-SCEEEECHHHH
T ss_pred             HHHHHHHHHHc---CCcCHHHHHHHcCCC-----cHH-HHHHHHHHHHHCCCEEecCCC-CCCeEeCHhHH
Confidence            44567778776   699999999999996     123 789999999999999865332 34899998875

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=96.87  E-value=0.00089  Score=48.59  Aligned_cols=61  Identities=20%  Similarity=0.268  Sum_probs=49.6

Q ss_pred             HHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405           29 AMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK  105 (356)
Q Consensus        29 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~  105 (356)
                      ++..-.++.|++.| .    ++.|+.|||+.+|++      +. .+.+.|+.|...|++..   .. +.|++++.+.
T Consensus        27 ~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~is------~~-tv~~~L~~L~~~Glv~~---~~-g~y~l~~~g~   87 (96)
T 1y0u_A           27 AVTNPVRRKILRML-D----KGRSEEEIMQTLSLS------KK-QLDYHLKVLEAGFCIER---VG-ERWVVTDAGK   87 (96)
T ss_dssp             HHSCHHHHHHHHHH-H----TTCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---ET-TEEEECTTTC
T ss_pred             HhCCHHHHHHHHHH-c----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE---EC-CEEEECCCch
Confidence            34444566788888 5    589999999999997      77 89999999999999995   33 6899987664

>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}

Probab=96.79  E-value=0.00073  Score=49.43  Aligned_cols=87  Identities=18%  Similarity=0.208  Sum_probs=51.7

Q ss_pred             CCccccchHHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHH
Q 018405            1 MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRL   80 (356)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~   80 (356)
                      ||.-+++..+....+.+.+..      .+|.--.++.|+..|...   |+.|+.|||+.+|++      +. .+.+.|+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~------~aL~~~~Rl~IL~~l~~~---~~~~~~ela~~l~is------~s-tvs~hL~~   64 (99)
T 2zkz_A            1 MTVFVDHKIEYMSLEDDAELL------KTMAHPMRLKIVNELYKH---KALNVTQIIQILKLP------QS-TVSQHLCK   64 (99)
T ss_dssp             ----------CCCHHHHHHHH------HHHCSHHHHHHHHHHHHH---SCEEHHHHHHHHTCC------HH-HHHHHHHH
T ss_pred             CeeeeccccchhhHHHHHHHH------HHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCcC------HH-HHHHHHHH
Confidence            555666666665555555544      333334556677444333   589999999999997      77 89999999


Q ss_pred             HhhCCcccceeeCCCcceecchhc
Q 018405           81 LVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        81 l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      |... ++........-.|++++.+
T Consensus        65 L~~~-lv~~~~~gr~~~y~l~~~~   87 (99)
T 2zkz_A           65 MRGK-VLKRNRQGLEIYYSINNPK   87 (99)
T ss_dssp             HBTT-TBEEEEETTEEEEECCCHH
T ss_pred             HHHH-hhhheEeCcEEEEEEChHH
Confidence            9999 9886432222357766543

>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A

Probab=96.76  E-value=0.00077  Score=50.15  Aligned_cols=59  Identities=14%  Similarity=0.223  Sum_probs=43.9

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV  103 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~  103 (356)
                      .++.|+..|..    ++.|+.|||+.+|++      +. .+.+.|+.|...|++..........|++++.
T Consensus        26 ~r~~IL~~L~~----~~~s~~eLa~~lgis------~s-tvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~   84 (108)
T 2kko_A           26 RRLQILDLLAQ----GERAVEAIATATGMN------LT-TASANLQALKSGGLVEARREGTRQYYRIAGE   84 (108)
T ss_dssp             TTHHHHHHHTT----CCEEHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEEEEEETTEEEEEESCH
T ss_pred             HHHHHHHHHHc----CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence            34556666765    489999999999997      77 8999999999999999653221234666543

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=96.75  E-value=0.00098  Score=46.21  Aligned_cols=61  Identities=16%  Similarity=0.282  Sum_probs=47.4

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      .+..|++.|.+.+.+.+.|+.|||+++|++      .. .+.+.|..|...|+|...+ ..++.|.+++
T Consensus        15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs------~~-tV~~~L~~L~~~G~I~~~g-~~~~~W~i~~   75 (77)
T 1qgp_A           15 QEQRILKFLEELGEGKATTAHDLSGKLGTP------KK-EINRVLYSLAKKGKLQKEA-GTPPLWKIAV   75 (77)
T ss_dssp             HHHHHHHHHHHHCSSSCEEHHHHHHHHCCC------HH-HHHHHHHHHHHHTSEEEEC-SSSCEEEECC
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEecC-CCCCceEecC
Confidence            345677888776333379999999999997      67 8999999999999998654 2347777654

>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A

Probab=96.71  E-value=0.002  Score=47.62  Aligned_cols=60  Identities=23%  Similarity=0.331  Sum_probs=44.9

Q ss_pred             HHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           32 AVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      --.++.|+..|..    ++.|+.|||+.+|++      +. .+.+.|+.|...|++..........|++++
T Consensus        25 ~~~r~~IL~~L~~----~~~~~~ela~~l~is------~s-tvs~~L~~L~~~Glv~~~~~gr~~~y~l~~   84 (106)
T 1r1u_A           25 DYNRIRIMELLSV----SEASVGHISHQLNLS------QS-NVSHQLKLLKSVHLVKAKRQGQSMIYSLDD   84 (106)
T ss_dssp             SHHHHHHHHHHHH----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred             CHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEECh
Confidence            3345567777775    489999999999997      77 899999999999999965321113466554

>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A

Probab=96.66  E-value=0.0015  Score=47.87  Aligned_cols=59  Identities=22%  Similarity=0.227  Sum_probs=44.6

Q ss_pred             HHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           33 VVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        33 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      -.++.|+..|.+    |+.|+.|||+.+|++      +. .+.+.|+.|...|++..........|++++
T Consensus        23 ~~r~~Il~~L~~----~~~~~~ela~~l~is------~~-tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~   81 (102)
T 3pqk_A           23 PVRLMLVCTLVE----GEFSVGELEQQIGIG------QP-TLSQQLGVLRESGIVETRRNIKQIFYRLTE   81 (102)
T ss_dssp             HHHHHHHHHHHT----CCBCHHHHHHHHTCC------TT-HHHHHHHHHHHTTSEEEECSSSCCEEEECS
T ss_pred             HHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEECc
Confidence            345556677765    589999999999997      66 899999999999999865322224566664

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=96.60  E-value=0.0015  Score=49.43  Aligned_cols=66  Identities=11%  Similarity=0.125  Sum_probs=50.2

Q ss_pred             HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      .+|.--.++.|+..|.+    |+.|+.|||+.+|++      +. .+.+.|+.|...|+|..........|++++.+
T Consensus        13 ~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~is------~~-tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~   78 (118)
T 3f6o_A           13 QALADPTRRAVLGRLSR----GPATVSELAKPFDMA------LP-SFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEP   78 (118)
T ss_dssp             HHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCSC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECSHH
T ss_pred             HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCeEEEecCCEEEEEECHHH
Confidence            33444466677777775    589999999999997      77 89999999999999986533223467777654

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=96.56  E-value=0.0013  Score=47.89  Aligned_cols=63  Identities=22%  Similarity=0.273  Sum_probs=47.4

Q ss_pred             HHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405           30 MHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV  103 (356)
Q Consensus        30 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~  103 (356)
                      |.--.++.|+..|.+    ++.|+.|||+.+|++      +. .+.+.|+.|...|++..........|++++.
T Consensus        20 l~~~~r~~Il~~L~~----~~~~~~ela~~l~is------~~-tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~   82 (98)
T 3jth_A           20 MANERRLQILCMLHN----QELSVGELCAKLQLS------QS-ALSQHLAWLRRDGLVTTRKEAQTVYYTLKSE   82 (98)
T ss_dssp             HCSHHHHHHHHHTTT----SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEECCTTCCEEEECCH
T ss_pred             cCCHHHHHHHHHHhc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEECHH
Confidence            333456667777776    489999999999997      77 8999999999999999653222245766643

>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0

Probab=96.56  E-value=0.003  Score=47.17  Aligned_cols=75  Identities=12%  Similarity=0.148  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCC--HHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           13 NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLS--VAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t--~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +...+.+.+.+.|...+|         ..|..    |+.+  +.||++.+ |++      +. .+.+.|+.|...|+|++
T Consensus        16 ~~~~~l~~l~~~wrl~IL---------~~L~~----g~~~~~~~eL~~~l~gis------~~-~ls~~L~~Le~~GlV~r   75 (111)
T 3df8_A           16 PSESVLHLLGKKYTMLII---------SVLGN----GSTRQNFNDIRSSIPGIS------ST-ILSRRIKDLIDSGLVER   75 (111)
T ss_dssp             TTSSTHHHHHSTTHHHHH---------HHHTS----SSSCBCHHHHHHTSTTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHcCccHHHHH---------HHHhc----CCCCCCHHHHHHHccCCC------HH-HHHHHHHHHHHCCCEEE
Confidence            444555566666655444         34444    4777  99999999 998      77 99999999999999997


Q ss_pred             eeeCCCcceecchhchHhh
Q 018405           90 SFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        90 ~~~~~~~~y~~t~~~~~l~  108 (356)
                      ... ....|++|+.|..+.
T Consensus        76 ~~~-r~~~y~LT~~G~~l~   93 (111)
T 3df8_A           76 RSG-QITTYALTEKGMNVR   93 (111)
T ss_dssp             EES-SSEEEEECHHHHHHH
T ss_pred             eec-CcEEEEECccHHHHH
Confidence            532 346799999987554

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28

Probab=96.48  E-value=0.002  Score=46.84  Aligned_cols=68  Identities=15%  Similarity=0.170  Sum_probs=51.8

Q ss_pred             HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeC--C-Ccceecchhc
Q 018405           28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD--G-QRLYSLASVA  104 (356)
Q Consensus        28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~--~-~~~y~~t~~~  104 (356)
                      .++..-.++.|+..|...   ++.|..+||+.+|++      +. .+.+.|+.|...|++......  + ...|++|+.+
T Consensus        11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~is------~~-tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g   80 (100)
T 1ub9_A           11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDLT------PG-NLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFG   80 (100)
T ss_dssp             HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHH
T ss_pred             cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHH
Confidence            345555677788877643   489999999999997      77 899999999999999964311  1 2468888877


Q ss_pred             h
Q 018405          105 K  105 (356)
Q Consensus       105 ~  105 (356)
                      .
T Consensus        81 ~   81 (100)
T 1ub9_A           81 M   81 (100)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=96.46  E-value=0.0024  Score=48.54  Aligned_cols=66  Identities=18%  Similarity=0.177  Sum_probs=48.7

Q ss_pred             HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405           28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV  103 (356)
Q Consensus        28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~  103 (356)
                      .+|.--.++.|+..|...   ++.|+.|||+.+|++      +. .+.+.|+.|...|++..........|++++.
T Consensus        37 ~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~is------~s-tvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~  102 (122)
T 1u2w_A           37 KAIADENRAKITYALCQD---EELCVCDIANILGVT------IA-NASHHLRTLYKQGVVNFRKEGKLALYSLGDE  102 (122)
T ss_dssp             HHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEC----CCEEEESCH
T ss_pred             HHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEECCEEEEEECHH
Confidence            344444677888988754   589999999999997      77 8999999999999998542111235776643

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=96.34  E-value=0.0033  Score=46.92  Aligned_cols=61  Identities=11%  Similarity=0.226  Sum_probs=46.1

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK  105 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~  105 (356)
                      .++.|+..|..    ++.|+.|||+.+|++      +. .+.+.|+.|...|++..........|.+|+.+.
T Consensus        22 ~r~~IL~~L~~----~~~~~~ela~~l~is------~~-tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~   82 (114)
T 2oqg_A           22 TRWEILTELGR----ADQSASSLATRLPVS------RQ-AIAKHLNALQACGLVESVKVGREIRYRALGAEL   82 (114)
T ss_dssp             HHHHHHHHHHH----SCBCHHHHHHHSSSC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred             HHHHHHHHHHc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeeEEecCCEEEEEechHHH
Confidence            34556677744    589999999999997      77 899999999999999964321123477776653

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=96.31  E-value=0.0047  Score=56.15  Aligned_cols=105  Identities=13%  Similarity=0.124  Sum_probs=71.0

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------------CCCceEEEccCCC-C--CCCC-c
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------------YLGIEHVGGDFFE-S--VPEA-D  253 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~-~--~~~~-D  253 (356)
                      ..++.+|||+++|.|.=+.+++...++-.++.+|. +.-++..++            ..++.+...|... +  .+.. |
T Consensus       146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD  225 (359)
T 4fzv_A          146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD  225 (359)
T ss_dssp             CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred             CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence            66789999999999999999998877667888885 433322211            1467788888765 2  2333 8


Q ss_pred             EEEe----cc----c-------ccCCChHH-------HHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405          254 TILM----KW----V-------LSSFDDEQ-------SLKLLKNCYKALPDGGKLLNVNVTIPE  295 (356)
Q Consensus       254 ~i~~----~~----v-------lh~~~~~~-------~~~~L~~~~~~L~pgG~lii~e~~~~~  295 (356)
                      .|++    +.    +       ...+..++       -.++|+++.++|||||+|+-.......
T Consensus       226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~  289 (359)
T 4fzv_A          226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH  289 (359)
T ss_dssp             EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred             EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence            8875    22    1       11222222       247899999999999998877655543

>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}

Probab=96.27  E-value=0.0031  Score=49.91  Aligned_cols=68  Identities=13%  Similarity=0.193  Sum_probs=53.4

Q ss_pred             HHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405           27 PAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK  105 (356)
Q Consensus        27 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~  105 (356)
                      ..+|.--.++.|+..|..    ++.|+.|||+.+|++      +. .+.+.|+.|...|+|..........|++|+.+.
T Consensus        52 l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgls------~s-tvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~  119 (151)
T 3f6v_A           52 LEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPAS------RS-AISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGL  119 (151)
T ss_dssp             HHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSSC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred             HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEecCCEEEEEEChHHH
Confidence            355556678888888885    589999999999997      77 899999999999999965322224688877654

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.27  E-value=0.0069  Score=54.02  Aligned_cols=67  Identities=16%  Similarity=0.216  Sum_probs=52.9

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC--CCceEEEccCCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE  247 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~  247 (356)
                      ...++++.+. .++...+||..+|.|..+..++++. |+.+++++|. |.+++.+++.  +|++++.+++.+
T Consensus        45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~  115 (347)
T 3tka_A           45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA  115 (347)
T ss_dssp             TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred             cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            3467777776 7788999999999999999999985 7889999996 8888877432  466677666543

>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48

Probab=96.23  E-value=0.0052  Score=44.64  Aligned_cols=63  Identities=14%  Similarity=0.225  Sum_probs=48.6

Q ss_pred             cCchhHHHhCCCCCCCCHHHH----HHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           36 LDVFEIISKAGAGAKLSVAEI----VAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~el----a~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      +.++..|...   ++.|..+|    |+.++++      +. .+.+.++.|...|++.+........|.+|+.|..+.
T Consensus        11 ~~iL~~l~~~---~~~~~~el~~~la~~l~is------~~-tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~   77 (99)
T 1tbx_A           11 AIVLAYLYDN---EGIATYDLYKKVNAEFPMS------TA-TFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFA   77 (99)
T ss_dssp             HHHHHHHTTC---TTCBHHHHHHHHHTTSCCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHc---CCcCHHHHHHHHHHHcCCC------HH-HHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHH
Confidence            3455666554   58999999    9999997      77 899999999999999975433335688888887544

>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69

Probab=96.11  E-value=0.0087  Score=44.23  Aligned_cols=52  Identities=17%  Similarity=0.216  Sum_probs=42.1

Q ss_pred             CCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHh
Q 018405           49 AKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYF  107 (356)
Q Consensus        49 ~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l  107 (356)
                      |+.+..||++.+ |++      +. .+.+.|+.|...|+|++.....+   -.|.+|+.|..+
T Consensus        26 ~~~~~~eLa~~l~~is------~~-tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l   81 (107)
T 2hzt_A           26 GKKRTSELKRLMPNIT------QK-MLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSL   81 (107)
T ss_dssp             CCBCHHHHHHHCTTSC------HH-HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGG
T ss_pred             CCCCHHHHHHHhcCCC------HH-HHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHH
Confidence            589999999999 997      77 89999999999999997543222   358888877543

>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A

Probab=96.07  E-value=0.011  Score=45.39  Aligned_cols=76  Identities=16%  Similarity=0.152  Sum_probs=56.2

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           13 NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      +....++++.+-|...+|.         .|..    |+.+..||++.+ |++      +. .|.+.|+.|...|+|++..
T Consensus        15 pi~~~l~~lg~kW~l~IL~---------~L~~----g~~rf~eL~~~l~gIs------~~-~Ls~~L~~Le~~GLV~R~~   74 (131)
T 4a5n_A           15 PVEFTLDVIGGKWKGILFY---------HMID----GKKRFNEFRRICPSIT------QR-MLTLQLRELEADGIVHREV   74 (131)
T ss_dssp             HHHHHHHHHCSSSHHHHHH---------HHTT----SCBCHHHHHHHCTTSC------HH-HHHHHHHHHHHTTSEEEEE
T ss_pred             cHHHHHHHHcCcCHHHHHH---------HHhc----CCcCHHHHHHHhcccC------HH-HHHHHHHHHHHCCCEEEEe
Confidence            4555666666666555443         3333    589999999999 997      77 9999999999999999753


Q ss_pred             eCCC---cceecchhchHhh
Q 018405           92 VDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        92 ~~~~---~~y~~t~~~~~l~  108 (356)
                      ...+   -.|++|+.|..+.
T Consensus        75 ~~~d~r~v~y~LT~~G~~l~   94 (131)
T 4a5n_A           75 YHQVPPKVEYSLTEFGRTLE   94 (131)
T ss_dssp             ECSSSCEEEEEECTTGGGGH
T ss_pred             cCCCCCeEEEEECHhHHHHH
Confidence            3221   3699999887554

>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69

Probab=96.05  E-value=0.0094  Score=44.45  Aligned_cols=60  Identities=12%  Similarity=0.148  Sum_probs=46.2

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      |+..|..    |+.+..||++.+ +++      +. .+.+.|+.|...|+|++.....+   -.|.+|+.|..+.
T Consensus        27 IL~~L~~----~~~~~~eLa~~l~~is------~~-tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~   90 (112)
T 1z7u_A           27 LMDELFQ----GTKRNGELMRALDGIT------QR-VLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY   90 (112)
T ss_dssp             HHHHHHH----SCBCHHHHHHHSTTCC------HH-HHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred             HHHHHHh----CCCCHHHHHHHhccCC------HH-HHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHH
Confidence            3444554    489999999999 997      77 89999999999999997543222   3589998886444

>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A

Probab=96.05  E-value=0.045  Score=42.34  Aligned_cols=64  Identities=9%  Similarity=0.039  Sum_probs=48.3

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++.++..|. .   ++.|..+||+.++++      +. .+.+.++.|...|++.......++   .+.+|+.|..+.
T Consensus        38 ~~~~iL~~l~-~---~~~~~~ela~~l~~s------~~-tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~  104 (146)
T 2gxg_A           38 LDFLVLRATS-D---GPKTMAYLANRYFVT------QS-AITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF  104 (146)
T ss_dssp             HHHHHHHHHT-T---SCBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHh-c---CCcCHHHHHHHhCCC------ch-hHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence            3445666776 4   589999999999997      77 899999999999999975322222   367788776444

>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}

Probab=96.04  E-value=0.0039  Score=54.64  Aligned_cols=57  Identities=11%  Similarity=0.253  Sum_probs=45.5

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      +.|++.|...+  ++.|+.|||+.+|++      .. -+.|+|..|+..|++..   +.+++|++.+..
T Consensus        33 l~IL~~l~~~~--~~ltl~eia~~lgl~------ks-Tv~RlL~tL~~~G~v~~---~~~~~Y~LG~~~   89 (275)
T 3mq0_A           33 VRILDLVAGSP--RDLTAAELTRFLDLP------KS-SAHGLLAVMTELDLLAR---SADGTLRIGPHS   89 (275)
T ss_dssp             HHHHHHHHHCS--SCEEHHHHHHHHTCC---------CHHHHHHHHHHTTSEEE---CTTSEEEECTHH
T ss_pred             HHHHHHHhhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE---CCCCcEEehHHH
Confidence            45778887753  479999999999997      56 89999999999999995   334789998654

>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19

Probab=95.93  E-value=0.007  Score=42.04  Aligned_cols=58  Identities=12%  Similarity=0.120  Sum_probs=45.0

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV  103 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~  103 (356)
                      ....|.+.|.+.    +.|+.|||+++|++      .. .+++.|..|...|+|.... ..+-.|+++..
T Consensus        18 ~~~~IL~lL~~~----g~sa~eLAk~LgiS------k~-aVr~~L~~Le~eG~I~~~~-~~PP~W~~~~~   75 (82)
T 1oyi_A           18 IVCEAIKTIGIE----GATAAQLTRQLNME------KR-EVNKALYDLQRSAMVYSSD-DIPPRWFMTTE   75 (82)
T ss_dssp             HHHHHHHHHSSS----TEEHHHHHHHSSSC------HH-HHHHHHHHHHHHTSSEECS-SSSCEEESCC-
T ss_pred             HHHHHHHHHHHc----CCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEeCC-CCCCcceeccC
Confidence            445567778764    49999999999997      77 9999999999999999653 22466776644

>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}

Probab=95.91  E-value=0.0082  Score=45.99  Aligned_cols=46  Identities=17%  Similarity=0.143  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      ++.|..+||+.+|++      +. .++++|+.|...|++.... ...|.|.++.
T Consensus        25 ~~~s~~ela~~~~i~------~~-~v~~il~~L~~~Glv~~~~-g~~ggy~L~~   70 (129)
T 2y75_A           25 GPTSLKSIAQTNNLS------EH-YLEQLVSPLRNAGLVKSIR-GAYGGYVLGS   70 (129)
T ss_dssp             CCBCHHHHHHHTTSC------HH-HHHHHHHHHHHTTSEEEC-----CCEEESS
T ss_pred             CcCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEecC-CCCCceEeCC
Confidence            589999999999997      77 9999999999999998542 1236788764

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=95.91  E-value=0.0094  Score=41.53  Aligned_cols=43  Identities=16%  Similarity=0.200  Sum_probs=37.1

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      .|++.|...   ++.|..|||+.+|++      +. .+++.|+.|...|++..
T Consensus         4 ~Il~~L~~~---~~~s~~eLa~~lgvs------~~-tv~r~L~~L~~~GlI~~   46 (81)
T 2htj_A            4 EILEFLNRH---NGGKTAEIAEALAVT------DY-QARYYLLLLEKAGMVQR   46 (81)
T ss_dssp             HHHHHHHHS---CCCCHHHHHHHHTSC------HH-HHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence            466677664   589999999999997      77 89999999999999984

>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}

Probab=95.89  E-value=0.026  Score=43.73  Aligned_cols=64  Identities=6%  Similarity=0.147  Sum_probs=49.9

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++.++..|...   ++ |..+||+.++++      +. .+.+.++.|...|++.+...+.++   .+.+|+.|..+.
T Consensus        38 ~~~~iL~~l~~~---~~-~~~~la~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  104 (144)
T 3f3x_A           38 LDFSILKATSEE---PR-SMVYLANRYFVT------QS-AITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL  104 (144)
T ss_dssp             HHHHHHHHHHHS---CE-EHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHC---CC-CHHHHHHHHCCC------hh-HHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence            455677888775   35 999999999998      77 899999999999999975433222   478888887544

>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A

Probab=95.85  E-value=0.0068  Score=46.05  Aligned_cols=60  Identities=15%  Similarity=0.270  Sum_probs=45.6

Q ss_pred             HHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405           33 VVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV  103 (356)
Q Consensus        33 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~  103 (356)
                      -.++.|+..|.+    ++.++.+||+.+|++      +. .+.+.|+.|...|++..........|++++.
T Consensus        46 ~~rl~IL~~L~~----~~~s~~ela~~lgis------~s-tvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~  105 (122)
T 1r1t_A           46 PNRLRLLSLLAR----SELCVGDLAQAIGVS------ES-AVSHQLRSLRNLRLVSYRKQGRHVYYQLQDH  105 (122)
T ss_dssp             HHHHHHHHHHTT----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEESSH
T ss_pred             HHHHHHHHHHHc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence            356677888875    489999999999997      77 8999999999999999653221134666543

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=95.83  E-value=0.014  Score=52.94  Aligned_cols=97  Identities=13%  Similarity=0.141  Sum_probs=61.2

Q ss_pred             HHHHHHHHHhcCCCC------CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH---HHhCCCCCCceEEEccCCC-
Q 018405          179 VVMEKVLESYKGFEH------VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV---IKNAPSYLGIEHVGGDFFE-  247 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~------~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~~~~v~~~~~D~~~-  247 (356)
                      ..+..|++.+. +.+      ...|||||.|.|.++..|+++....++++++. +..   ++.....++++++.+|+++ 
T Consensus        39 ~i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           39 TVYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW  117 (353)
T ss_dssp             HHHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred             HHHHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence            34566776665 442      47899999999999999998643335666653 333   2221135789999999975 


Q ss_pred             C-C----CC--------------C-cEEEecccccCCChHHHHHHHHHH
Q 018405          248 S-V----PE--------------A-DTILMKWVLSSFDDEQSLKLLKNC  276 (356)
Q Consensus       248 ~-~----~~--------------~-D~i~~~~vlh~~~~~~~~~~L~~~  276 (356)
                      + +    .+              . .+.+..|.=++.+.+-..++|..+
T Consensus       118 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnIstpil~~ll~~~  166 (353)
T 1i4w_A          118 STYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCI  166 (353)
T ss_dssp             HHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHHH
T ss_pred             hhHHHhhcccccccccccccccCCCceEEEEECCCchHHHHHHHHHHhc
Confidence            3 1    11              1 245666666666554444566543

>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69

Probab=95.80  E-value=0.012  Score=43.39  Aligned_cols=76  Identities=14%  Similarity=0.123  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           13 NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      +...+.+.+.+-+...+|         ..|..    |+.+..||++.+ |++      +. .+.+.|+.|...|+|++..
T Consensus        14 ~~~~~l~~l~~~~~~~IL---------~~L~~----~~~~~~eL~~~l~gis------~~-~ls~~L~~Le~~GlV~r~~   73 (107)
T 2fsw_A           14 PVRKSMQIFAGKWTLLII---------FQINR----RIIRYGELKRAIPGIS------EK-MLIDELKFLCGKGLIKKKQ   73 (107)
T ss_dssp             HHHHHHHHHTSSSHHHHH---------HHHTT----SCEEHHHHHHHSTTCC------HH-HHHHHHHHHHHTTSEEEEE
T ss_pred             CHHHHHHHHcCccHHHHH---------HHHHh----CCcCHHHHHHHcccCC------HH-HHHHHHHHHHHCCCEEEee
Confidence            445555555555544433         34443    489999999999 597      77 8999999999999999754


Q ss_pred             eCCC---cceecchhchHhh
Q 018405           92 VDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        92 ~~~~---~~y~~t~~~~~l~  108 (356)
                      .+.+   -.|.+|+.|..+.
T Consensus        74 ~~~d~r~~~y~LT~~G~~l~   93 (107)
T 2fsw_A           74 YPEVPPRVEYSLTPLGEKVL   93 (107)
T ss_dssp             ECSSSCEEEEEECHHHHTTH
T ss_pred             cCCCCCeeEEEECccHHHHH
Confidence            3222   3599999886433

>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}

Probab=95.73  E-value=0.049  Score=43.18  Aligned_cols=64  Identities=11%  Similarity=0.150  Sum_probs=50.2

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      +..++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|+|++...+.++   .+.+|+.|..+.
T Consensus        48 q~~iL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~  114 (162)
T 3k0l_A           48 QFTALSVLAAK---PNLSNAKLAERSFIK------PQ-SANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL  114 (162)
T ss_dssp             HHHHHHHHHHC---TTCCHHHHHHHHTSC------GG-GHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence            44577788776   589999999999997      77 899999999999999975432222   477888887544

>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69

Probab=95.69  E-value=0.015  Score=44.66  Aligned_cols=76  Identities=11%  Similarity=0.036  Sum_probs=53.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           13 NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      +...+.+.+.+-|...         |+..|..    |+.+..||++.+ |++      +. .+.+.|+.|...|+|++..
T Consensus        24 ~~~~~l~~l~~~w~l~---------IL~~L~~----g~~~~~eLa~~l~gis------~~-tls~~L~~Le~~GlV~r~~   83 (131)
T 1yyv_A           24 PSREVLKHVTSRWGVL---------ILVALRD----GTHRFSDLRRXMGGVS------EX-MLAQSLQALEQDGFLNRVS   83 (131)
T ss_dssp             THHHHHHHHHSHHHHH---------HHHHGGG----CCEEHHHHHHHSTTCC------HH-HHHHHHHHHHHHTCEEEEE
T ss_pred             CHHHHHHHHcCCcHHH---------HHHHHHc----CCCCHHHHHHHhccCC------HH-HHHHHHHHHHHCCcEEEEe
Confidence            3444555554444433         3344444    589999999999 797      77 9999999999999999754


Q ss_pred             eCCC---cceecchhchHhh
Q 018405           92 VDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        92 ~~~~---~~y~~t~~~~~l~  108 (356)
                      ...+   -.|.+|+.|..+.
T Consensus        84 ~~~d~r~~~y~LT~~G~~l~  103 (131)
T 1yyv_A           84 YPVVPPHVEYSLTPLGEQVS  103 (131)
T ss_dssp             ECSSSCEEEEEECHHHHHHH
T ss_pred             cCCCCCeEEEEECccHHHHH
Confidence            3222   3699999887544

>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A

Probab=95.68  E-value=0.026  Score=43.69  Aligned_cols=66  Identities=15%  Similarity=0.167  Sum_probs=46.2

Q ss_pred             HHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           33 VVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        33 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      ..+..++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|+|.+...+.++   .+.+|+.|..+.
T Consensus        37 ~~~~~vL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~  105 (142)
T 3ech_A           37 PPDVHVLKLIDEQ---RGLNLQDLGRQMCRD------KA-LITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH  105 (142)
T ss_dssp             HHHHHHHHHHHHT---TTCCHHHHHHHHC---------C-HHHHHHHHHHHTTSEEC----------CCEECHHHHHHH
T ss_pred             HHHHHHHHHHHhC---CCcCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence            4566678888876   589999999999997      66 899999999999999975322222   367787776444

>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}

Probab=95.67  E-value=0.027  Score=43.37  Aligned_cols=65  Identities=15%  Similarity=0.140  Sum_probs=51.3

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|...|++.......+   ..|.+|+.|..+.
T Consensus        32 ~~~~iL~~l~~~---~~~~~~ela~~l~is------~~-~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~   99 (142)
T 3bdd_A           32 TRYSILQTLLKD---APLHQLALQERLQID------RA-AVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL   99 (142)
T ss_dssp             HHHHHHHHHHHH---CSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            445577777765   489999999999997      77 89999999999999997543222   3588899998665

>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*

Probab=95.64  E-value=0.014  Score=45.40  Aligned_cols=50  Identities=16%  Similarity=0.138  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      ++.|..+||+.++++      +. .+.+.++.|...|+|.+.   ..+.|.+|+.|..+.
T Consensus        21 ~~~~~~ela~~l~vs------~~-tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~   70 (142)
T 1on2_A           21 GYARVSDIAEALAVH------PS-SVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIG   70 (142)
T ss_dssp             SSCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHH
Confidence            489999999999997      77 899999999999999953   246799999887544

>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}

Probab=95.62  E-value=0.061  Score=42.16  Aligned_cols=64  Identities=6%  Similarity=0.080  Sum_probs=47.5

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      ++.++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|+|.+.....+   -.+.+|+.|..+.
T Consensus        45 ~~~iL~~l~~~---~~~t~~ela~~l~i~------~~-tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~  111 (155)
T 3cdh_A           45 EWRVLACLVDN---DAMMITRLAKLSLME------QS-RMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA  111 (155)
T ss_dssp             HHHHHHHHSSC---SCBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred             HHHHHHHHHHC---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence            44566677664   589999999999997      77 89999999999999996422112   2477888886444

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=95.62  E-value=0.014  Score=40.26  Aligned_cols=43  Identities=16%  Similarity=0.244  Sum_probs=38.0

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      |.+.|.+.   |..++.|||+.++++      +. -++|-|+.|...|++.+.
T Consensus         7 Il~~L~~~---g~vsv~eLa~~l~VS------~~-TIRrdL~~Le~~G~l~R~   49 (78)
T 1xn7_A            7 VRDLLALR---GRMEAAQISQTLNTP------QP-MINAMLQQLESMGKAVRI   49 (78)
T ss_dssp             HHHHHHHS---CSBCHHHHHHHTTCC------HH-HHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHc---CCCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEe
Confidence            56777776   699999999999998      77 999999999999999953

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.57  E-value=0.011  Score=51.26  Aligned_cols=91  Identities=15%  Similarity=0.147  Sum_probs=58.5

Q ss_pred             CCCCceEEEEcC------CccHHHHHHHHhCCC-CeEEEccchHHHHhCCCCCCceEEEccCCC-CCCCC-cEEEe---c
Q 018405          191 FEHVKKLVDVGG------GLGATLNMIISKYPR-IKGINYDLPYVIKNAPSYLGIEHVGGDFFE-SVPEA-DTILM---K  258 (356)
Q Consensus       191 ~~~~~~vLDiG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~~-D~i~~---~  258 (356)
                      .+...+|||+|+      -.|..  .+.+..|+ ..++.+|+.++...+    . .++.||+.+ ..... |+|++   .
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAP  179 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYD  179 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCC
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCC
Confidence            346789999996      55663  33445676 689999974332211    2 458999876 22233 88876   2


Q ss_pred             ccccCCC------hHHHHHHHHHHHHhCCCCCEEEE
Q 018405          259 WVLSSFD------DEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       259 ~vlh~~~------~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      +.--+.+      ..=++.+|.=+.+.|+|||.+++
T Consensus       180 NtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvV  215 (344)
T 3r24_A          180 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV  215 (344)
T ss_dssp             TTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence            2211111      11377888889999999999998

>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A

Probab=95.54  E-value=0.018  Score=41.55  Aligned_cols=47  Identities=15%  Similarity=0.273  Sum_probs=41.6

Q ss_pred             CCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           51 LSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        51 ~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      .+..+||..+|++      +. .+++.++.|...|+++.   . .+.|.+|+.|..+.
T Consensus        21 ~~~t~La~~~~ls------~~-~~~~~l~~L~~~GLI~~---~-~~~~~LT~kG~~~l   67 (95)
T 1r7j_A           21 SPKTRIMYGANLS------YA-LTGRYIKMLMDLEIIRQ---E-GKQYMLTKKGEELL   67 (95)
T ss_dssp             BCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---E-TTEEEECHHHHHHH
T ss_pred             CCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCeEE---E-CCeeEEChhHHHHH
Confidence            8999999999998      88 99999999999999994   3 36799999998544

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=95.52  E-value=0.014  Score=41.07  Aligned_cols=43  Identities=9%  Similarity=0.251  Sum_probs=38.3

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      |.+.|.+.   |..|+.|||+.++++      +. -++|.|+.|...|++.+.
T Consensus         7 Il~~L~~~---g~vsv~eLA~~l~VS------~~-TIRrDL~~Le~~G~l~R~   49 (87)
T 2k02_A            7 VRDMLALQ---GRMEAKQLSARLQTP------QP-LIDAMLERMEAMGKVVRI   49 (87)
T ss_dssp             HHHHHHHS---CSEEHHHHHHHTTCC------HH-HHHHHHHHHHTTCCSEEE
T ss_pred             HHHHHHHc---CCCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence            56777776   699999999999998      77 999999999999999965

>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}

Probab=95.50  E-value=0.086  Score=41.19  Aligned_cols=65  Identities=12%  Similarity=0.182  Sum_probs=49.4

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc--eeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC--SFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~--~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|...|+|.+  ...+.++   .+.+|+.|..+.
T Consensus        42 ~~~~iL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~  111 (154)
T 2qww_A           42 QQLAMINVIYST---PGISVADLTKRLIIT------GS-SAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS  111 (154)
T ss_dssp             HHHHHHHHHHHS---TTEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence            345567777775   589999999999997      77 89999999999999996  3222222   478888887444

>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2

Probab=95.49  E-value=0.016  Score=49.89  Aligned_cols=57  Identities=14%  Similarity=0.208  Sum_probs=45.9

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      +.|++.|.+.+  ++.|+.|||+.+|++      +. -+.|+|+.|+..|++..+   ..+.|++++..
T Consensus        11 l~iL~~l~~~~--~~~~~~ela~~~gl~------~s-tv~r~l~~L~~~G~v~~~---~~~~Y~lg~~~   67 (249)
T 1mkm_A           11 FEILDFIVKNP--GDVSVSEIAEKFNMS------VS-NAYKYMVVLEEKGFVLRK---KDKRYVPGYKL   67 (249)
T ss_dssp             HHHHHHHHHCS--SCBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEC---TTSCEEECTHH
T ss_pred             HHHHHHHHhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEEC---CCCcEEECHHH
Confidence            45667776642  379999999999997      66 899999999999999953   34789997654

>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=95.48  E-value=0.017  Score=44.50  Aligned_cols=65  Identities=12%  Similarity=0.098  Sum_probs=49.8

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|++.......++   .+.+|+.|..+.
T Consensus        39 ~~~~iL~~l~~~---~~~t~~ela~~l~~~------~~-tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~  106 (140)
T 2nnn_A           39 TQWAALVRLGET---GPCPQNQLGRLTAMD------AA-TIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL  106 (140)
T ss_dssp             HHHHHHHHHHHH---SSBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence            355677888665   489999999999997      77 899999999999999974322222   377888776444

>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=95.46  E-value=0.023  Score=44.21  Aligned_cols=66  Identities=18%  Similarity=0.164  Sum_probs=49.7

Q ss_pred             HHhcCchhHHHh-CCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           33 VVELDVFEIISK-AGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        33 a~~lglf~~L~~-~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      ..++.++..|.. .   ++.|..+||+.++++      +. .+.+.++.|...|+|.+.....+   -.+.+|+.|..+.
T Consensus        35 ~~~~~iL~~l~~~~---~~~~~~~la~~l~i~------~~-~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  104 (147)
T 2hr3_A           35 FSQLVVLGAIDRLG---GDVTPSELAAAERMR------SS-NLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL  104 (147)
T ss_dssp             HHHHHHHHHHHHTT---SCBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHHcC---CCCCHHHHHHHhCCC------hh-hHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence            345667788876 5   589999999999997      77 89999999999999996432222   2377888886444

>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}

Probab=95.46  E-value=0.068  Score=42.67  Aligned_cols=65  Identities=15%  Similarity=0.212  Sum_probs=49.8

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|+|.+.....++   .+.+|+.|..+.
T Consensus        46 ~~~~iL~~L~~~---~~~t~~eLa~~l~is------~~-tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~  113 (168)
T 2nyx_A           46 PQFRTLVILSNH---GPINLATLATLLGVQ------PS-ATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV  113 (168)
T ss_dssp             HHHHHHHHHHHH---CSEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence            445677777765   589999999999997      77 899999999999999975322222   377888886444

>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28

Probab=95.42  E-value=0.018  Score=44.30  Aligned_cols=64  Identities=19%  Similarity=0.164  Sum_probs=48.9

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      ++.++..|...   ++.|..+||+.++++      +. .+.+.++.|...|++.+...+.++   .+.+|+.|..+.
T Consensus        36 ~~~iL~~l~~~---~~~~~~~la~~l~~~------~~-tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~  102 (138)
T 1jgs_A           36 QFKVLCSIRCA---ACITPVELKKVLSVD------LG-ALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC  102 (138)
T ss_dssp             HHHHHHHHHHH---SSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHhc---CCCCHHHHHHHHCCC------hH-HHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence            44566677664   489999999999997      77 899999999999999975322222   377888887444

>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}

Probab=95.40  E-value=0.03  Score=43.72  Aligned_cols=66  Identities=9%  Similarity=0.113  Sum_probs=46.6

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .+..++..|...+  ++.|..+||+.++++      +. .+.+.++.|+..|+|.+...+.+.   .+.+|+.|..+.
T Consensus        40 ~q~~vL~~l~~~~--~~~t~~eLa~~l~i~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  108 (150)
T 3fm5_A           40 RSYSVLVLACEQA--EGVNQRGVAATMGLD------PS-QIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR  108 (150)
T ss_dssp             HHHHHHHHHHHST--TCCCSHHHHHHHTCC------HH-HHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred             HHHHHHHHHHhCC--CCcCHHHHHHHHCCC------Hh-HHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence            4555666776542  478999999999997      77 899999999999999964322222   267888876444

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=95.39  E-value=0.013  Score=40.43  Aligned_cols=35  Identities=17%  Similarity=0.103  Sum_probs=32.4

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      +|.|+.|||+.+|++      +. .+++-|..|...|+|.+.
T Consensus        23 ~~psv~EIa~~lgvS------~~-TVrr~L~~Le~kG~I~R~   57 (77)
T 2jt1_A           23 APVKTRDIADAAGLS------IY-QVRLYLEQLHDVGVLEKV   57 (77)
T ss_dssp             SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred             CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCcEEec
Confidence            589999999999997      77 899999999999999964

>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*

Probab=95.38  E-value=0.017  Score=44.34  Aligned_cols=65  Identities=11%  Similarity=0.162  Sum_probs=48.7

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|++.......++   .+.+|+.|..+.
T Consensus        30 ~~~~iL~~l~~~---~~~~~~ela~~l~~s------~~-tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~   97 (138)
T 3bpv_A           30 AQVACLLRIHRE---PGIKQDELATFFHVD------KG-TIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII   97 (138)
T ss_dssp             HHHHHHHHHHHS---TTCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence            344566777665   589999999999997      77 899999999999999975322222   367787776443

>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}

Probab=95.37  E-value=0.016  Score=44.47  Aligned_cols=65  Identities=11%  Similarity=0.198  Sum_probs=49.0

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|...|++.+...+.++   .+.+|+.|..+.
T Consensus        34 ~~~~iL~~l~~~---~~~~~~ela~~l~~~------~~-tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~  101 (139)
T 3bja_A           34 VQFGVIQVLAKS---GKVSMSKLIENMGCV------PS-NMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK  101 (139)
T ss_dssp             HHHHHHHHHHHS---CSEEHHHHHHHCSSC------CT-THHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCcCHHHHHHHHCCC------hh-HHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence            345567777765   589999999999997      66 899999999999999965322222   367788776444

>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}

Probab=95.35  E-value=0.019  Score=44.63  Aligned_cols=65  Identities=15%  Similarity=0.161  Sum_probs=50.6

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .+..++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|+|++...+.+   -.+.+|+.|..+.
T Consensus        32 ~q~~iL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~   99 (145)
T 3g3z_A           32 NLFAVLYTLATE---GSRTQKHIGEKWSLP------KQ-TVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA   99 (145)
T ss_dssp             HHHHHHHHHHHH---CSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred             HHHHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence            456677788665   489999999999997      77 89999999999999996432222   2478888887544

>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A

Probab=95.35  E-value=0.012  Score=50.47  Aligned_cols=59  Identities=14%  Similarity=0.135  Sum_probs=46.2

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK  105 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~  105 (356)
                      +.|++.|.+.+  ++.|+.|||+.+|++      +. -+.|+|+.|+..|++..+.  ..++|++++...
T Consensus         9 l~iL~~l~~~~--~~~s~~ela~~~gl~------~s-tv~r~l~~L~~~G~v~~~~--~~~~Y~lg~~~~   67 (241)
T 2xrn_A            9 ASIMRALGSHP--HGLSLAAIAQLVGLP------RS-TVQRIINALEEEFLVEALG--PAGGFRLGPALG   67 (241)
T ss_dssp             HHHHHHHHTCT--TCEEHHHHHHHTTSC------HH-HHHHHHHHHHTTTSEEECG--GGCEEEECSHHH
T ss_pred             HHHHHHHHhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEeC--CCCeEEECHHHH
Confidence            34667776642  479999999999997      66 8999999999999999532  237899986543

>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}

Probab=95.34  E-value=0.11  Score=40.37  Aligned_cols=64  Identities=9%  Similarity=0.130  Sum_probs=48.3

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      ++.++..|...   ++.|..+||+.++++      +. .+.+.++.|...|++.......++   .+.+|+.|..+.
T Consensus        44 ~~~iL~~l~~~---~~~t~~ela~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~  110 (150)
T 2rdp_A           44 QFVALQWLLEE---GDLTVGELSNKMYLA------CS-TTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII  110 (150)
T ss_dssp             HHHHHHHHHHH---CSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCCC------ch-hHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence            44566777765   589999999999997      77 899999999999999975322222   377888876444

>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}

Probab=95.32  E-value=0.018  Score=45.77  Aligned_cols=46  Identities=15%  Similarity=0.189  Sum_probs=38.8

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      ++.|..+||+.++++      +. .++++|..|...|+|.... ...|.|+++.
T Consensus        43 ~~~s~~eIA~~~~i~------~~-~l~kil~~L~~aGlv~s~r-G~~GGy~Lar   88 (159)
T 3lwf_A           43 GPISLRSIAQDKNLS------EH-YLEQLIGPLRNAGIVKSIR-GAHGGYVLNG   88 (159)
T ss_dssp             CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEC-STTCEEEECS
T ss_pred             CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCeEEEec-CCCCceEecC
Confidence            589999999999997      88 9999999999999999642 2247788753

>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A

Probab=95.31  E-value=0.015  Score=45.47  Aligned_cols=46  Identities=15%  Similarity=0.173  Sum_probs=38.5

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      ++.|..+||+.++++      +. .++++|..|...|+|.... ..+|.|+++.
T Consensus        27 ~~~s~~~IA~~~~i~------~~-~l~kil~~L~~aGlv~s~r-G~~GGy~Lar   72 (143)
T 3t8r_A           27 GCISLKSIAEENNLS------DL-YLEQLVGPLRNAGLIRSVR-GAKGGYQLRV   72 (143)
T ss_dssp             CCEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEECS-SSSSEEEESS
T ss_pred             CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCEEEecC-CCCCCeeecC
Confidence            489999999999997      78 9999999999999998642 2247788764

>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}

Probab=95.24  E-value=0.044  Score=43.26  Aligned_cols=65  Identities=9%  Similarity=0.165  Sum_probs=46.9

Q ss_pred             HhcCchhHHH-hCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIIS-KAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++.++..|. ..   ++.|..+||+.++++      +. .+.+.++.|+..|+|.+.....++   .+.+|+.|..+.
T Consensus        48 ~~~~iL~~L~~~~---~~~~~~ela~~l~i~------~~-tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~  116 (160)
T 3boq_A           48 AKFDAMAQLARNP---DGLSMGKLSGALKVT------NG-NVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF  116 (160)
T ss_dssp             HHHHHHHHHHHCT---TCEEHHHHHHHCSSC------CS-CHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcC---CCCCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence            3555778883 43   589999999999997      66 899999999999999964222222   367888776444

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=95.23  E-value=0.067  Score=51.35  Aligned_cols=111  Identities=14%  Similarity=0.071  Sum_probs=69.1

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-------------CCCeEEEccc-hHHHHhCCCC------CCce
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-------------PRIKGINYDL-PYVIKNAPSY------LGIE  239 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~------~~v~  239 (356)
                      ++.-+++.+. .....+|+|-+||+|.++....+..             ....+.|+|. +.+...++.+      +.-.
T Consensus       205 Vv~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~  283 (530)
T 3ufb_A          205 VVRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPR  283 (530)
T ss_dssp             HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCE
T ss_pred             HHHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccc
Confidence            4455555554 5566799999999999988765532             1345788885 6655555321      3345


Q ss_pred             EEEccCCC-CCC------CCcEEEecccccC-CC-------------hHHHHHHHHHHHHhCC-------CCCEEEEEec
Q 018405          240 HVGGDFFE-SVP------EADTILMKWVLSS-FD-------------DEQSLKLLKNCYKALP-------DGGKLLNVNV  291 (356)
Q Consensus       240 ~~~~D~~~-~~~------~~D~i~~~~vlh~-~~-------------~~~~~~~L~~~~~~L~-------pgG~lii~e~  291 (356)
                      +..+|... +..      ..|+|+++--+-. +.             .+.....+..+.+.|+       |||++.++-+
T Consensus       284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP  363 (530)
T 3ufb_A          284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP  363 (530)
T ss_dssp             EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred             ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence            67788765 321      1399988544421 11             0112356777888776       6999888643

>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}

Probab=95.22  E-value=0.0061  Score=52.94  Aligned_cols=58  Identities=14%  Similarity=0.225  Sum_probs=45.2

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      +.|++.|.+.+  ++.|+.|||+++|++      +. -+.|+|+.|+..|++..+.  ..++|++.+..
T Consensus         9 l~IL~~l~~~~--~~lsl~eia~~lgl~------ks-T~~RlL~tL~~~G~v~~~~--~~~~Y~lG~~~   66 (260)
T 3r4k_A            9 LTLLTYFNHGR--LEIGLSDLTRLSGMN------KA-TVYRLMSELQEAGFVEQVE--GARSYRLGPQV   66 (260)
T ss_dssp             HHHHTTCBTTB--SEEEHHHHHHHHCSC------HH-HHHHHHHHHHHTTSEEECS--SSSEEEECTTH
T ss_pred             HHHHHHHhhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEcC--CCCcEEcCHHH
Confidence            34666666532  589999999999997      66 8999999999999999532  23899997644

>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28

Probab=95.16  E-value=0.1  Score=40.74  Aligned_cols=64  Identities=19%  Similarity=0.165  Sum_probs=48.3

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      ++.++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|+|.+.....+   -.+.+|+.|..+.
T Consensus        39 ~~~iL~~l~~~---~~~t~~ela~~l~~s------~~-tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  105 (155)
T 1s3j_A           39 QLFVLASLKKH---GSLKVSEIAERMEVK------PS-AVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF  105 (155)
T ss_dssp             HHHHHHHHHHH---SEEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence            34467777664   489999999999997      77 89999999999999997532222   2467787776444

>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=95.11  E-value=0.019  Score=44.32  Aligned_cols=65  Identities=11%  Similarity=0.091  Sum_probs=49.6

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .+..++..|...   ++.|..+||+.++++      +. .+.+.++.|...|++.+.....++   .+.+|+.|..+.
T Consensus        37 ~~~~iL~~l~~~---~~~t~~ela~~l~~s------~~-~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  104 (142)
T 2fbi_A           37 QQWRVIRILRQQ---GEMESYQLANQACIL------RP-SMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF  104 (142)
T ss_dssp             HHHHHHHHHHHH---CSEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCCC------Hh-HHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence            455667777765   489999999999997      77 899999999999999975332222   367787776444

>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}

Probab=95.09  E-value=0.022  Score=48.75  Aligned_cols=63  Identities=11%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      .++.++..|.+.   ++.|..|||+.+|++      +. .+.|.|+.|...|++...+  ....|++|+.+..+.
T Consensus       153 ~~~~IL~~L~~~---~~~s~~eLA~~lgls------ks-Tv~r~L~~Le~~GlV~r~~--r~~~~~LT~~G~~l~  215 (244)
T 2wte_A          153 EEMKLLNVLYET---KGTGITELAKMLDKS------EK-TLINKIAELKKFGILTQKG--KDRKVELNELGLNVI  215 (244)
T ss_dssp             HHHHHHHHHHHH---TCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEET--TTTEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEeC--CccEEEECHHHHHHH
Confidence            345566666554   589999999999997      77 8999999999999999642  247899999998654

>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}

Probab=95.05  E-value=0.016  Score=44.94  Aligned_cols=65  Identities=17%  Similarity=0.182  Sum_probs=48.9

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .+..++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|+|++...+.+   -.+.+|+.|..+.
T Consensus        38 ~~~~iL~~l~~~---~~~t~~eLa~~l~~~------~~-~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  105 (143)
T 3oop_A           38 EQWSVLEGIEAN---EPISQKEIALWTKKD------TP-TVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET  105 (143)
T ss_dssp             HHHHHHHHHHHH---SSEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCcCHHHHHHHHCCC------Hh-hHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence            455567777765   589999999999997      77 89999999999999996432222   2477888886444

>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28

Probab=95.02  E-value=0.025  Score=43.80  Aligned_cols=64  Identities=8%  Similarity=0.007  Sum_probs=48.8

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      +..++..|...   ++.|..+||+.++++      +. .+.+.++.|...|++.....+.++   .+.+|+.|..+.
T Consensus        31 ~~~iL~~l~~~---~~~t~~~la~~l~~s------~~-~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~   97 (144)
T 1lj9_A           31 QYLYLVRVCEN---PGIIQEKIAELIKVD------RT-TAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY   97 (144)
T ss_dssp             HHHHHHHHHHS---TTEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHC---cCcCHHHHHHHHCCC------Hh-HHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence            34466677665   489999999999997      77 899999999999999975322222   377888886444

>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69

Probab=95.01  E-value=0.034  Score=43.55  Aligned_cols=53  Identities=17%  Similarity=0.212  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC--CcceecchhchHhh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG--QRLYSLASVAKYFV  108 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~--~~~y~~t~~~~~l~  108 (356)
                      |+.+..||++.+|++      +. .+.+.|+.|...|+|++.....  .-.|++|+.|..+.
T Consensus        36 g~~~~~eLa~~lgis------~~-tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~   90 (146)
T 2f2e_A           36 GLTRFGEFQKSLGLA------KN-ILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF   90 (146)
T ss_dssp             TCCSHHHHHHHHCCC------HH-HHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred             CCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHH
Confidence            489999999999997      77 8999999999999999753211  13788998886433

>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=94.99  E-value=0.025  Score=43.83  Aligned_cols=64  Identities=17%  Similarity=0.150  Sum_probs=46.9

Q ss_pred             hcCchhHH-HhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           35 ELDVFEII-SKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L-~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      +..++..| ...   ++.|..+||+.++++      +. .+.+.++.|...|++.....+.++   .+.+|+.|..+.
T Consensus        39 ~~~iL~~l~~~~---~~~t~~~la~~l~~s------~~-~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~  106 (146)
T 2fbh_A           39 RWLVLLHLARHR---DSPTQRELAQSVGVE------GP-TLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI  106 (146)
T ss_dssp             HHHHHHHHHHCS---SCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred             HHHHHHHHHHcC---CCCCHHHHHHHhCCC------hh-hHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence            34466677 443   589999999999997      77 899999999999999975322222   366776665433

>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28

Probab=94.95  E-value=0.034  Score=43.70  Aligned_cols=65  Identities=14%  Similarity=0.053  Sum_probs=49.6

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|+|.+.....+   -.+.+|+.|..+.
T Consensus        45 ~~~~iL~~l~~~---~~~t~~ela~~l~is------~~-tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~  112 (154)
T 2eth_A           45 TELYAFLYVALF---GPKKMKEIAEFLSTT------KS-NVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF  112 (154)
T ss_dssp             HHHHHHHHHHHH---CCBCHHHHHHHTTSC------HH-HHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence            455677777665   489999999999997      77 89999999999999997532222   2367788776444

>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28

Probab=94.95  E-value=0.025  Score=43.79  Aligned_cols=65  Identities=9%  Similarity=0.129  Sum_probs=49.7

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|...|++.......++   .+.+|+.|..+.
T Consensus        34 ~~~~iL~~l~~~---~~~~~~~la~~l~~s------~~-tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~  101 (145)
T 2a61_A           34 AQFDILQKIYFE---GPKRPGELSVLLGVA------KS-TVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI  101 (145)
T ss_dssp             HHHHHHHHHHHH---CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCCC------ch-hHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence            455667777664   589999999999997      77 899999999999999975322222   477888886444

>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A

Probab=94.90  E-value=0.11  Score=40.54  Aligned_cols=63  Identities=14%  Similarity=0.303  Sum_probs=45.5

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee--eCCC---cceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF--VDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~--~~~~---~~y~~t~~~~~l~  108 (356)
                      +..++..| ..   ++.|..+||+.++++      +. .+.+.++.|...|++.+..  .+.+   -.+.+|+.|..+.
T Consensus        40 q~~iL~~l-~~---~~~t~~eLa~~l~~~------~~-~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~  107 (151)
T 3kp7_A           40 QSHVLNML-SI---EALTVGQITEKQGVN------KA-AVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI  107 (151)
T ss_dssp             HHHHHHHH-HH---SCBCHHHHHHHHCSC------SS-HHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred             HHHHHHHH-Hc---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence            33477788 54   599999999999997      66 8999999999999999621  1122   2366777776444

>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}

Probab=94.87  E-value=0.016  Score=50.22  Aligned_cols=56  Identities=21%  Similarity=0.311  Sum_probs=43.4

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      .|++.|...+  ++.|+.|||+.+|++      +. -+.|+|+.|+..|++..+   .+++|++++..
T Consensus        27 ~iL~~l~~~~--~~~~~~eia~~~gl~------ks-tv~r~l~tL~~~G~v~~~---~~~~Y~lg~~~   82 (260)
T 2o0y_A           27 DLLELFDAAH--PTRSLKELVEGTKLP------KT-TVVRLVATMCARSVLTSR---ADGSYSLGPEM   82 (260)
T ss_dssp             HHHTTCBTTB--SSBCHHHHHHHHCCC------HH-HHHHHHHHHHHTTSEEEC---TTSCEEECHHH
T ss_pred             HHHHHHhhCC--CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEC---CCCeEEecHHH
Confidence            3455554321  489999999999997      66 899999999999999953   23489998754

>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}

Probab=94.83  E-value=0.03  Score=43.61  Aligned_cols=65  Identities=17%  Similarity=0.215  Sum_probs=48.2

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|+|.+...+.+   ..+.+|+.|..+.
T Consensus        41 ~~~~iL~~l~~~---~~~t~~ela~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~  108 (148)
T 3nrv_A           41 TEWRIISVLSSA---SDCSVQKISDILGLD------KA-AVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY  108 (148)
T ss_dssp             HHHHHHHHHHHS---SSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHHcC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence            455677777775   589999999999997      77 89999999999999996532222   3477787776444

>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48

Probab=94.72  E-value=0.041  Score=39.45  Aligned_cols=62  Identities=15%  Similarity=0.107  Sum_probs=45.3

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhh-HHHHHHHHhhCCcccceeeCC-CcceecchhchHhh
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMM-LDRVLRLLVSYNALHCSFVDG-QRLYSLASVAKYFV  108 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~-l~r~L~~l~~~g~l~~~~~~~-~~~y~~t~~~~~l~  108 (356)
                      ++..|...+  ++.|..|||+.++++      +. . +.+.++.|...|++..+..+. ...+.+|+.|..+.
T Consensus        20 ~L~~l~~~~--~~~t~~eLa~~l~is------~~-t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~   83 (95)
T 2pg4_A           20 TLLEFEKKG--YEPSLAEIVKASGVS------EK-TFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLA   83 (95)
T ss_dssp             HHHHHHHTT--CCCCHHHHHHHHCCC------HH-HHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHH
T ss_pred             HHHHHHhcC--CCCCHHHHHHHHCCC------ch-HHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHH
Confidence            444555541  279999999999997      77 8 999999999999999432221 13477888887544

>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}

Probab=94.70  E-value=0.13  Score=40.37  Aligned_cols=63  Identities=10%  Similarity=0.091  Sum_probs=47.4

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      ..++..|...   ++.|..+||+.++++      +. .+.++++.|+..|+|++...+.++   .+.+|+.|..+.
T Consensus        53 ~~vL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~  118 (159)
T 3s2w_A           53 FPFLMRLYRE---DGINQESLSDYLKID------KG-TTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE  118 (159)
T ss_dssp             HHHHHHHHHS---CSEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence            3456666665   589999999999997      77 899999999999999975322222   467888886444

>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}

Probab=94.68  E-value=0.019  Score=44.98  Aligned_cols=65  Identities=11%  Similarity=0.065  Sum_probs=48.0

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .+..++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|+|++...+.+   -.+.+|+.|..+.
T Consensus        42 ~q~~iL~~l~~~---~~~~~~eLa~~l~~~------~~-~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  109 (149)
T 4hbl_A           42 SQYLVMLTLWEE---NPQTLNSIGRHLDLS------SN-TLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ  109 (149)
T ss_dssp             HHHHHHHHHHHS---SSEEHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred             HHHHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence            455667777765   589999999999997      77 89999999999999996532222   2477787776444

>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}

Probab=94.67  E-value=0.12  Score=40.85  Aligned_cols=65  Identities=18%  Similarity=0.191  Sum_probs=49.0

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|+|.+...+.+   -.+.+|+.|..+.
T Consensus        54 ~q~~vL~~l~~~---~~~t~~eLa~~l~~~------~~-~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~  121 (161)
T 3e6m_A           54 PKLRLLSSLSAY---GELTVGQLATLGVME------QS-TTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL  121 (161)
T ss_dssp             HHHHHHHHHHHH---SEEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence            344577777765   489999999999997      77 89999999999999996532222   2477888887444

>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}

Probab=94.65  E-value=0.031  Score=44.29  Aligned_cols=65  Identities=12%  Similarity=0.129  Sum_probs=49.3

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|+|.+.....+   -.+.+|+.|..+.
T Consensus        53 ~~~~iL~~l~~~---~~~t~~ela~~l~is------~~-tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~  120 (162)
T 3cjn_A           53 AKMRALAILSAK---DGLPIGTLGIFAVVE------QS-TLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY  120 (162)
T ss_dssp             HHHHHHHHHHHS---CSEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHC---CCCCHHHHHHHHCCC------hh-HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            455677788775   589999999999997      77 89999999999999997432212   2477787776444

>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}

Probab=94.57  E-value=0.035  Score=43.89  Aligned_cols=65  Identities=12%  Similarity=0.179  Sum_probs=47.7

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|...|+|.+.....+   ..+.+|+.|..+.
T Consensus        50 ~~~~iL~~l~~~---~~~t~~ela~~l~is------~~-tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  117 (162)
T 2fa5_A           50 PEWRVITILALY---PGSSASEVSDRTAMD------KV-AVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY  117 (162)
T ss_dssp             HHHHHHHHHHHS---TTCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred             HHHHHHHHHHhC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence            345577777765   589999999999997      77 89999999999999996421111   3477787776444

>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A

Probab=94.53  E-value=0.017  Score=44.62  Aligned_cols=64  Identities=17%  Similarity=0.150  Sum_probs=47.2

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      +..++..|...   ++.|..+||+.++++      +. .+.++++.|+..|+|++...+.+   -.+.+|+.|..+.
T Consensus        38 q~~vL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  104 (140)
T 3hsr_A           38 GYIVLMAIEND---EKLNIKKLGERVFLD------SG-TLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK  104 (140)
T ss_dssp             HHHHHHHSCTT---CEEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred             HHHHHHHHHHc---CCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence            34455566554   589999999999997      77 89999999999999997532222   2577888886444

>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A

Probab=94.49  E-value=0.046  Score=39.22  Aligned_cols=51  Identities=8%  Similarity=0.236  Sum_probs=40.0

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-CcceecchhchHhh
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-QRLYSLASVAKYFV  108 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-~~~y~~t~~~~~l~  108 (356)
                      +.|..+||+.++++      +. .+.++++.|...|+|.. ..++ ...+++|+.|..+.
T Consensus        30 ~~t~~eLa~~l~i~------~~-tvs~~l~~Le~~Glv~~-~~d~R~~~v~LT~~G~~~~   81 (95)
T 2qvo_A           30 DVYIQYIASKVNSP------HS-YVWLIIKKFEEAKMVEC-ELEGRTKIIRLTDKGQKIA   81 (95)
T ss_dssp             CEEHHHHHHHSSSC------HH-HHHHHHHHHHHTTSEEE-EEETTEEEEEECHHHHHHH
T ss_pred             CcCHHHHHHHHCcC------HH-HHHHHHHHHHHCcCccC-CCCCCeEEEEEChhHHHHH
Confidence            38999999999997      77 89999999999999942 2221 13588998887544

>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}

Probab=94.48  E-value=0.06  Score=40.31  Aligned_cols=47  Identities=15%  Similarity=0.269  Sum_probs=40.1

Q ss_pred             HHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           33 VVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        33 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      -.++.++..|.+    ++.|+.+||+.++++      +. .+.+.|+.|...|++...
T Consensus        32 ~~~~~il~~L~~----~~~s~~ela~~l~is------~s-tvsr~l~~Le~~Glv~~~   78 (119)
T 2lkp_A           32 PSRLMILTQLRN----GPLPVTDLAEAIGME------QS-AVSHQLRVLRNLGLVVGD   78 (119)
T ss_dssp             HHHHHHHHHHHH----CCCCHHHHHHHHSSC------HH-HHHHHHHHHHHHCSEEEE
T ss_pred             HHHHHHHHHHHH----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence            456677777776    378999999999997      77 899999999999999864

>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}

Probab=94.47  E-value=0.23  Score=38.55  Aligned_cols=64  Identities=13%  Similarity=0.181  Sum_probs=48.8

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      ++.++..|...   ++.|..+||+.++++      +. .+.+.++.|...|+|.+.....+   -.+.+|+.|..+.
T Consensus        42 ~~~iL~~l~~~---~~~t~~ela~~l~~~------~~-~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~  108 (152)
T 3bj6_A           42 QRAILEGLSLT---PGATAPQLGAALQMK------RQ-YISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII  108 (152)
T ss_dssp             HHHHHHHHHHS---TTEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred             HHHHHHHHHhC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence            45567777765   589999999999997      77 89999999999999997432222   2467788776443

>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55

Probab=94.45  E-value=0.024  Score=44.59  Aligned_cols=46  Identities=7%  Similarity=0.055  Sum_probs=37.8

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV  103 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~  103 (356)
                      ++.|..+||+.++++      +. .++++|..|...|+|....  +.|.|.++..
T Consensus        29 ~~~~~~~iA~~~~i~------~~-~l~kil~~L~~~Glv~s~r--G~GGy~L~~~   74 (149)
T 1ylf_A           29 SLCTSDYMAESVNTN------PV-VIRKIMSYLKQAGFVYVNR--GPGGAGLLKD   74 (149)
T ss_dssp             GGCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEC-----CCEEESSC
T ss_pred             CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEEcc--CCCceEeCCC
Confidence            489999999999997      88 9999999999999999642  2577887643

>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0

Probab=94.43  E-value=0.039  Score=42.39  Aligned_cols=67  Identities=10%  Similarity=0.063  Sum_probs=49.4

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .+..++..|...| +++.|..+||+.++++      +. .+.+.++.|+..|+|++...+.+   -.+.+|+.|..+.
T Consensus        32 ~~~~vL~~l~~~~-~~~~t~~ela~~l~~~------~~-tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~  101 (139)
T 3eco_A           32 EQGHTLGYLYAHQ-QDGLTQNDIAKALQRT------GP-TVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV  101 (139)
T ss_dssp             HHHHHHHHHHHST-TTCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCCcCHHHHHHHhCCC------cc-cHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence            3455677776642 1389999999999997      77 89999999999999997532222   2467788776444

>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*

Probab=94.41  E-value=0.025  Score=43.96  Aligned_cols=66  Identities=14%  Similarity=0.142  Sum_probs=50.0

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFVR  109 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~~  109 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|...|+|.+.....+   -.+.+|+.|..+..
T Consensus        41 ~~~~iL~~l~~~---~~~~~~~la~~l~~~------~~-tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~  109 (147)
T 1z91_A           41 PQYLALLLLWEH---ETLTVKKMGEQLYLD------SG-TLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE  109 (147)
T ss_dssp             HHHHHHHHHHHH---SEEEHHHHHHTTTCC------HH-HHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred             HHHHHHHHHHHC---CCCCHHHHHHHHCCC------cC-cHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence            445566777664   489999999999997      77 89999999999999996432222   23778888875443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.38  E-value=0.032  Score=49.31  Aligned_cols=52  Identities=17%  Similarity=0.181  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC
Q 018405          179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS  234 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~  234 (356)
                      ..+..++..+.  .+...|||++||+|..+...++.  +.+++++|+ +.+++.+++
T Consensus       223 ~l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~  275 (297)
T 2zig_A          223 ELAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE  275 (297)
T ss_dssp             HHHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence            44566666654  46679999999999999988774  568999996 777777654

>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}

Probab=94.37  E-value=0.024  Score=49.04  Aligned_cols=59  Identities=15%  Similarity=0.140  Sum_probs=46.6

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      .|++.|...+  ++.|+.|||+.+|++      +. -+.|+|+.|+..|++..   + ++.|++++....+.
T Consensus        18 ~iL~~l~~~~--~~~~~~eia~~~gl~------~s-tv~r~l~~L~~~G~v~~---~-~~~Y~Lg~~~~~l~   76 (257)
T 2g7u_A           18 AVLLAFDAQR--PNPTLAELATEAGLS------RP-AVRRILLTLQKLGYVAG---S-GGRWSLTPRVLSIG   76 (257)
T ss_dssp             HHHHTCSSSC--SSCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---E-TTEEEECGGGHHHH
T ss_pred             HHHHHHHhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEe---C-CCEEEEcHHHHHHH
Confidence            4556665432  489999999999997      66 89999999999999994   3 38999987765554

>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28

Probab=94.30  E-value=0.052  Score=41.69  Aligned_cols=65  Identities=9%  Similarity=0.170  Sum_probs=47.5

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYF  107 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l  107 (356)
                      +..++..|...+ +++.|..+||+.++++      +. .+.+.++.|...|++.+...+.++   .+.+|+.|..+
T Consensus        36 ~~~iL~~l~~~~-~~~~~~~ela~~l~~~------~~-tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~  103 (141)
T 3bro_A           36 QMTIIDYLSRNK-NKEVLQRDLESEFSIK------SS-TATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKL  103 (141)
T ss_dssp             HHHHHHHHHHTT-TSCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTT
T ss_pred             HHHHHHHHHHCC-CCCcCHHHHHHHHCCC------cc-hHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHH
Confidence            444567776652 1279999999999997      77 899999999999999975322222   46677777533

>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0

Probab=94.25  E-value=0.039  Score=44.01  Aligned_cols=47  Identities=19%  Similarity=0.287  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV  103 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~  103 (356)
                      ++.|.++||+.++++      +. .+++++..|...|+++... ...|.|++...
T Consensus        27 ~~~s~~~IA~~~~is------~~-~l~kil~~L~~aGlv~s~r-G~~GGy~Lar~   73 (162)
T 3k69_A           27 SKVASRELAQSLHLN------PV-MIRNILSVLHKHGYLTGTV-GKNGGYQLDLA   73 (162)
T ss_dssp             SCBCHHHHHHHHTSC------GG-GTHHHHHHHHHTTSSEEEC-STTCEEECCSC
T ss_pred             CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEeec-CCCCCeEecCC
Confidence            489999999999997      77 9999999999999998642 22477988643

>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}

Probab=94.25  E-value=0.044  Score=42.44  Aligned_cols=64  Identities=17%  Similarity=0.308  Sum_probs=46.0

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .+..++..|...    +.|..+||+.++++      +. .+.+.++.|...|+|.+...+.+   -.+.+|+.|..+.
T Consensus        39 ~~~~iL~~l~~~----~~t~~eLa~~l~~s------~~-tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~  105 (146)
T 3tgn_A           39 TQEHILMLLSEE----SLTNSELARRLNVS------QA-AVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA  105 (146)
T ss_dssp             HHHHHHHHHTTC----CCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred             HHHHHHHHHHhC----CCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence            455667777764    49999999999998      77 89999999999999996432212   3467777775443

>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D

Probab=94.24  E-value=0.036  Score=42.13  Aligned_cols=66  Identities=12%  Similarity=0.188  Sum_probs=47.8

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      +..++..|...+ +++.|..|||+.++++      +. .+.++++.|+..|+|.+...+.+   -.+.+|+.|..+.
T Consensus        39 q~~vL~~l~~~~-~~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~  107 (127)
T 2frh_A           39 EFAVLTYISENK-EKEYYLKDIINHLNYK------QP-QVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI  107 (127)
T ss_dssp             HHHHHHHHHHTC-CSEEEHHHHHHHSSSH------HH-HHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred             HHHHHHHHHhcc-CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            444666666531 1479999999999997      77 89999999999999997432222   2366777776444

>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71

Probab=94.14  E-value=0.085  Score=37.87  Aligned_cols=53  Identities=21%  Similarity=0.190  Sum_probs=42.2

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-CcceecchhchHhh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-QRLYSLASVAKYFV  108 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-~~~y~~t~~~~~l~  108 (356)
                      ++.+..+||+.++++      .. .|.|.|..|...|++......+ -++-.+|+.|..+.
T Consensus        35 ~~~s~~eLa~~l~l~------~s-tLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l   88 (96)
T 2obp_A           35 TPWSLPKIAKRAQLP------MS-VLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA   88 (96)
T ss_dssp             CCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHhCCc------hh-hHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence            578999999999997      67 9999999999999999754321 24567788887443

>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A

Probab=94.13  E-value=0.043  Score=42.94  Aligned_cols=66  Identities=17%  Similarity=0.185  Sum_probs=49.7

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFVR  109 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~~  109 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|...|+|.+.....+   -.+.+|+.|..+..
T Consensus        48 ~~~~iL~~l~~~---~~~t~~ela~~l~~s------~~-tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~  116 (153)
T 2pex_A           48 PQYLVMLVLWET---DERSVSEIGERLYLD------SA-TLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS  116 (153)
T ss_dssp             HHHHHHHHHHHS---CSEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred             HHHHHHHHHHhC---CCcCHHHHHHHhCCC------cc-cHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence            345567777765   589999999999997      77 89999999999999996432212   24788888875553

>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28

Probab=94.10  E-value=0.049  Score=41.96  Aligned_cols=65  Identities=11%  Similarity=0.223  Sum_probs=49.6

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++.++..|...   ++.|..+||+.++++      +. .+.+.++.|...|++.....+.++   .+.+|+.|..+.
T Consensus        38 ~~~~iL~~l~~~---~~~~~~ela~~l~~~------~~-tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~  105 (142)
T 2bv6_A           38 PQFLVLTILWDE---SPVNVKKVVTELALD------TG-TVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR  105 (142)
T ss_dssp             HHHHHHHHHHHS---SEEEHHHHHHHTTCC------TT-THHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence            455677777765   589999999999997      66 899999999999999975322222   467788876444

>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50

Probab=94.05  E-value=0.048  Score=39.75  Aligned_cols=48  Identities=15%  Similarity=0.362  Sum_probs=39.5

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      .+..|+..|...   ++.|..+||+.+|++      +. .+.+.|+.|...|+|....
T Consensus        21 ~~~~il~~l~~~---~~~s~~ela~~l~is------~~-tv~~~l~~L~~~glv~~~~   68 (109)
T 1sfx_A           21 SDVRIYSLLLER---GGMRVSEIARELDLS------AR-FVRDRLKVLLKRGFVRREI   68 (109)
T ss_dssp             HHHHHHHHHHHH---CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEEe
Confidence            345566667554   489999999999997      77 8999999999999999653

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=93.97  E-value=0.043  Score=38.18  Aligned_cols=49  Identities=14%  Similarity=0.272  Sum_probs=39.3

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhC-----CCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      .+..|++.|.+.+ +++.|+.||++.+     +++      .. -+.|.|+.|+..|+|.+.
T Consensus        18 ~r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~is------~~-TVyR~L~~L~~~Glv~~~   71 (83)
T 2fu4_A           18 PRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEIG------LA-TVYRVLNQFDDAGIVTRH   71 (83)
T ss_dssp             HHHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCCC------HH-HHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCCC------Hh-hHHHHHHHHHHCCCeEEE
Confidence            4455788886531 0389999999999     887      66 899999999999999964

>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*

Probab=93.93  E-value=0.099  Score=41.00  Aligned_cols=64  Identities=14%  Similarity=0.102  Sum_probs=47.4

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      ..++-.|...+  ++.+..+||+.++++      +. .+.++++.|+..|+|.+...+.++   ...+|+.|..+.
T Consensus        34 ~~vL~~L~~~~--~~~~~~eLa~~l~~~------~~-tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~  100 (151)
T 4aik_A           34 WVTLYNINRLP--PEQSQIQLAKAIGIE------QP-SLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII  100 (151)
T ss_dssp             HHHHHHHHHSC--TTSCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred             HHHHHHHHHcC--CCCcHHHHHHHHCcC------HH-HHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence            34555666543  367889999999998      77 899999999999999976433333   366788776444

>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}

Probab=93.91  E-value=0.025  Score=49.19  Aligned_cols=55  Identities=16%  Similarity=0.222  Sum_probs=44.1

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      .|++.|...+  ++.|+.|||+.+|++      +. -+.|+|+.|+..|++..   + ++.|++++..
T Consensus        25 ~iL~~l~~~~--~~~~~~eia~~~gl~------~s-tv~r~l~tL~~~G~v~~---~-~~~Y~Lg~~~   79 (265)
T 2ia2_A           25 AVIRCFDHRN--QRRTLSDVARATDLT------RA-TARRFLLTLVELGYVAT---D-GSAFWLTPRV   79 (265)
T ss_dssp             HHHHTCCSSC--SSEEHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEEE---S-SSEEEECGGG
T ss_pred             HHHHHHHhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEe---c-CCEEEEcHHH
Confidence            4566665422  489999999999997      66 89999999999999994   4 4899998754

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=93.89  E-value=0.16  Score=44.74  Aligned_cols=119  Identities=19%  Similarity=0.263  Sum_probs=66.3

Q ss_pred             CCceEEEEcCCccHHHHH----HHHhCCCCe--EEEccc-h------------HHH----HhCCC--CCC--ceEEEccC
Q 018405          193 HVKKLVDVGGGLGATLNM----IISKYPRIK--GINYDL-P------------YVI----KNAPS--YLG--IEHVGGDF  245 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~----l~~~~p~~~--~~~~D~-~------------~~~----~~a~~--~~~--v~~~~~D~  245 (356)
                      +.-+|+|+|-|+|.....    +.+..|+.+  ++.++. +            ...    +....  ..+  +++..||.
T Consensus        96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa  175 (308)
T 3vyw_A           96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA  175 (308)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred             CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence            457899999999975433    234467654  455542 1            000    00000  023  34566776


Q ss_pred             CC---CCCC--CcEEEecccccCCChH-HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC
Q 018405          246 FE---SVPE--ADTILMKWVLSSFDDE-QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH  319 (356)
Q Consensus       246 ~~---~~~~--~D~i~~~~vlh~~~~~-~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (356)
                      .+   ..+.  .|++++-..--.-.++ -...++++++++++|||.++-..                             
T Consensus       176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt-----------------------------  226 (308)
T 3vyw_A          176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS-----------------------------  226 (308)
T ss_dssp             HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-----------------------------
T ss_pred             HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-----------------------------
Confidence            55   2232  2887763321111111 13578888999999888765310                             


Q ss_pred             CccCCHHHHHHHHHHcCCcceeEEE
Q 018405          320 GRERTKQEYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       320 ~~~~t~~e~~~ll~~aGf~~~~~~~  344 (356)
                          ....+++-|++|||++.++--
T Consensus       227 ----aag~VRR~L~~aGF~V~k~~G  247 (308)
T 3vyw_A          227 ----SSLSVRKSLLTLGFKVGSSRE  247 (308)
T ss_dssp             ----CCHHHHHHHHHTTCEEEEEEC
T ss_pred             ----CcHHHHHHHHHCCCEEEecCC
Confidence                123567888999999766543

>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}

Probab=93.85  E-value=0.069  Score=41.10  Aligned_cols=49  Identities=4%  Similarity=-0.024  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      ++.|..+||+.++++      +. .+.+.++.|...|+|.+.   . +.|.+|+.+..+.
T Consensus        30 ~~~s~~ela~~l~is------~~-tv~~~l~~Le~~Gli~r~---~-~~~~Lt~~g~~~~   78 (139)
T 2x4h_A           30 EGAKINRIAKDLKIA------PS-SVFEEVSHLEEKGLVKKK---E-DGVWITNNGTRSI   78 (139)
T ss_dssp             SCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE---T-TEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHhCCC------hH-HHHHHHHHHHHCCCEEec---C-CeEEEChhHHHHH
Confidence            589999999999997      77 899999999999999953   2 6789998886443

>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}

Probab=93.73  E-value=0.079  Score=41.66  Aligned_cols=56  Identities=11%  Similarity=0.211  Sum_probs=44.1

Q ss_pred             hHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           40 EIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        40 ~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      ..|...   ++.|..+||+.++++      +. .+.+.|+.|...|+|...  . +..+.+|+.|..+.
T Consensus        47 ~~l~~~---~~~~~~~la~~l~vs------~~-tvs~~l~~Le~~Glv~r~--~-~~~~~lT~~g~~~~  102 (155)
T 2h09_A           47 DLIREV---GEARQVDMAARLGVS------QP-TVAKMLKRLATMGLIEMI--P-WRGVFLTAEGEKLA  102 (155)
T ss_dssp             HHHHHH---SCCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTCEEEE--T-TTEEEECHHHHHHH
T ss_pred             HHHHhC---CCcCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCEEEe--c-CCceEEChhHHHHH
Confidence            355543   478999999999998      77 899999999999999853  2 35678888886444

>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64

Probab=93.64  E-value=0.068  Score=44.32  Aligned_cols=66  Identities=11%  Similarity=0.181  Sum_probs=48.6

Q ss_pred             HHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeC----C-Ccceecchh
Q 018405           29 AMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD----G-QRLYSLASV  103 (356)
Q Consensus        29 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~----~-~~~y~~t~~  103 (356)
                      +|..-.++.|+..|..    +|.|+.+|++.+|++      +. .+.+.|+.|...|+|......    + .-.|++|+.
T Consensus        11 aL~~~~rl~IL~~L~~----~~~s~~eLa~~l~is------~s-tvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~   79 (202)
T 2p4w_A           11 VLGNETRRRILFLLTK----RPYFVSELSRELGVG------QK-AVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKG   79 (202)
T ss_dssp             HHHSHHHHHHHHHHHH----SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTT
T ss_pred             HhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChH
Confidence            3444455666677765    589999999999997      77 899999999999999975331    1 135776665


Q ss_pred             ch
Q 018405          104 AK  105 (356)
Q Consensus       104 ~~  105 (356)
                      +.
T Consensus        80 ~~   81 (202)
T 2p4w_A           80 LR   81 (202)
T ss_dssp             EE
T ss_pred             HH
Confidence            43

>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}

Probab=93.58  E-value=0.058  Score=40.80  Aligned_cols=47  Identities=15%  Similarity=0.285  Sum_probs=39.2

Q ss_pred             hcCchhHHHhCCCCCC-CCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           35 ELDVFEIISKAGAGAK-LSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~-~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      +..|+..|.+.+  +| .|+.|||+.++++      +. -+.|.|+.|...|++.+.
T Consensus        28 e~~il~~L~~~~--~~~~t~~eLa~~l~~s------~s-TV~r~L~~L~~~GlV~r~   75 (123)
T 3r0a_A           28 DLNVMKSFLNEP--DRWIDTDALSKSLKLD------VS-TVQRSVKKLHEKEILQRS   75 (123)
T ss_dssp             HHHHHHHHHHST--TCCEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHCC--CCCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEee
Confidence            455677776653  45 8999999999997      77 899999999999999964

>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28

Probab=93.50  E-value=0.064  Score=42.81  Aligned_cols=66  Identities=14%  Similarity=0.117  Sum_probs=48.0

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .++.++..|...+  ++.|..+||+.++++      +. .+.+.++.|+..|+|.+...+.+   -.+.+|+.|..+.
T Consensus        54 ~q~~vL~~L~~~~--~~~t~~eLa~~l~i~------~~-tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~  122 (166)
T 3deu_A           54 THWVTLHNIHQLP--PDQSQIQLAKAIGIE------QP-SLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI  122 (166)
T ss_dssp             HHHHHHHHHHHSC--SSEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred             HHHHHHHHHHHcC--CCCCHHHHHHHHCCC------Hh-hHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence            4555677776622  479999999999997      77 89999999999999996532222   2467787776444

>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A

Probab=93.47  E-value=0.12  Score=36.90  Aligned_cols=60  Identities=15%  Similarity=0.235  Sum_probs=48.1

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHH-hCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVA-QIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~-~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      +..|+-.|.+.   ++.|+.+||+ ..+++      .. .+.|-++.|...|+++.   .++| ..+|+.|..+.
T Consensus        18 QfsiL~~L~~~---~~~t~~~Lae~~l~~d------rs-tvsrnl~~L~r~GlVe~---~~~D-l~LT~~G~~~l   78 (95)
T 1bja_A           18 TATILITIAKK---DFITAAEVREVHPDLG------NA-VVNSNIGVLIKKGLVEK---SGDG-LIITGEAQDII   78 (95)
T ss_dssp             HHHHHHHHHHS---TTBCHHHHHHTCTTSC------HH-HHHHHHHHHHTTTSEEE---ETTE-EEECHHHHHHH
T ss_pred             HHHHHHHHHHC---CCCCHHHHHHHHhccc------HH-HHHHHHHHHHHCCCeec---CCCC-eeeCHhHHHHH
Confidence            44556667776   4899999999 99997      77 89999999999999982   3345 89999998544

>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}

Probab=93.47  E-value=0.16  Score=39.68  Aligned_cols=68  Identities=22%  Similarity=0.192  Sum_probs=50.7

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCC-CCCCCchhHhhhHHHHHHHHhhCCcccceeeC----CC----cceecchhc
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIP-LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD----GQ----RLYSLASVA  104 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~----~~----~~y~~t~~~  104 (356)
                      .++.|+..|..++ .+..|+++|+..++ ++      .. -+.+.|+.|+..|+|.+....    +.    ..|++|+.|
T Consensus        30 tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~lS------~a-TVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~G  101 (151)
T 3u1d_A           30 TRLDVLHQILAQP-DGVLSVEELLYRNPDET------EA-NLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEG  101 (151)
T ss_dssp             HHHHHHHHHHHST-TSCBCHHHHHHHCTTSC------HH-HHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHH
T ss_pred             HHHHHHHHHHcCC-CCCCCHHHHHHhcCCCC------HH-HHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHH
Confidence            5566677776542 14689999999999 87      77 899999999999999964211    11    279999999


Q ss_pred             h-Hhhh
Q 018405          105 K-YFVR  109 (356)
Q Consensus       105 ~-~l~~  109 (356)
                      . .|..
T Consensus       102 r~~l~~  107 (151)
T 3u1d_A          102 IALLRA  107 (151)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            8 5544

>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}

Probab=93.35  E-value=0.089  Score=42.97  Aligned_cols=70  Identities=7%  Similarity=0.003  Sum_probs=52.7

Q ss_pred             HHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           32 AVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      +..+..++..|...+ .++.|..+||+.++++      +. .+.+.++.|+..|+|.+...+.+   -.+.+|+.|..+.
T Consensus        40 t~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is------~~-tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~  111 (189)
T 3nqo_A           40 TSRQYMTILSILHLP-EEETTLNNIARKMGTS------KQ-NINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM  111 (189)
T ss_dssp             CHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred             CHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence            345666777777521 1589999999999997      77 89999999999999997543222   3478899888554


Q ss_pred             h
Q 018405          109 R  109 (356)
Q Consensus       109 ~  109 (356)
                      .
T Consensus       112 ~  112 (189)
T 3nqo_A          112 V  112 (189)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0

Probab=93.35  E-value=0.063  Score=41.75  Aligned_cols=66  Identities=8%  Similarity=0.051  Sum_probs=41.3

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      +..++..|...+ +++.|..+||+.++++      +. .+.+.++.|+..|+|.+...+.+   -.+.+|+.|..+.
T Consensus        43 q~~vL~~l~~~~-~~~~t~~eLa~~l~~~------~~-~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~  111 (148)
T 3jw4_A           43 QGRMIGYIYENQ-ESGIIQKDLAQFFGRR------GA-SITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV  111 (148)
T ss_dssp             HHHHHHHHHHHT-TTCCCHHHHHHC-------------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred             HHHHHHHHHhCC-CCCCCHHHHHHHHCCC------hh-HHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence            344666666531 1489999999999997      67 89999999999999996532222   2466777776444

>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41

Probab=93.22  E-value=0.089  Score=38.73  Aligned_cols=47  Identities=23%  Similarity=0.364  Sum_probs=37.6

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      .+.|+..+...|  .+.|..+||+.+|++      +. -+++.|..|...|++...
T Consensus        20 ~l~Il~~l~~~g--~~~s~~eLa~~lgvs------~~-tV~~~L~~L~~~GlV~~~   66 (110)
T 1q1h_A           20 VIDVLRILLDKG--TEMTDEEIANQLNIK------VN-DVRKKLNLLEEQGFVSYR   66 (110)
T ss_dssp             THHHHHHHHHHC--SCBCHHHHHHTTTSC------HH-HHHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHHcC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence            344566664331  378999999999997      77 899999999999999864

>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}

Probab=93.04  E-value=0.061  Score=41.99  Aligned_cols=53  Identities=11%  Similarity=0.137  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      ++.|..+||+.++++      +. .+.++++.|+..|+|++...+.++   ...+|+.|..+.
T Consensus        50 ~~~t~~eLa~~l~~~------~~-tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~  105 (147)
T 4b8x_A           50 GELPMSKIGERLMVH------PT-SVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV  105 (147)
T ss_dssp             GEEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHHCCC------HH-HHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence            579999999999998      77 899999999999999976433333   366788886444

>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B

Probab=92.87  E-value=0.069  Score=37.01  Aligned_cols=47  Identities=21%  Similarity=0.379  Sum_probs=38.0

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCC----CCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIP----LKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~----~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      +..+++.|.+.   ++.|+.||++.++    ++      +. -+.++|+.|...|+|.+..
T Consensus        11 e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s------~~-Tv~~~l~rL~~kGlv~r~~   61 (82)
T 1p6r_A           11 ELEVMKVIWKH---SSINTNEVIKELSKTSTWS------PK-TIQTMLLRLIKKGALNHHK   61 (82)
T ss_dssp             HHHHHHHHHTS---SSEEHHHHHHHHHHHSCCC------HH-HHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHcC---CCCCHHHHHHHHhhcCCcc------HH-HHHHHHHHHHHCCCeEEEe
Confidence            45566777654   5899999999996    54      66 8999999999999999753

>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A

Probab=92.80  E-value=0.097  Score=43.79  Aligned_cols=50  Identities=16%  Similarity=0.234  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      ++.+..+||+.++++      +. .+.+.++.|...|++.+.   .+..+.+|+.|..+.
T Consensus        19 ~~~~~~~lA~~l~vs------~~-tvs~~l~~Le~~GlV~r~---~~~~i~LT~~G~~~~   68 (214)
T 3hrs_A           19 NKITNKEIAQLMQVS------PP-AVTEMMKKLLAEELLIKD---KKAGYLLTDLGLKLV   68 (214)
T ss_dssp             SCCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHHCCC------hh-HHHHHHHHHHHCCCEEEe---cCCCeEECHHHHHHH
Confidence            589999999999998      77 899999999999999963   246789999987554

>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55

Probab=92.49  E-value=0.092  Score=40.95  Aligned_cols=43  Identities=19%  Similarity=0.138  Sum_probs=36.8

Q ss_pred             CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405           52 SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV  103 (356)
Q Consensus        52 t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~  103 (356)
                      |+++||+.++++      +. .++++|..|...|+|.... . .|.|+++..
T Consensus        25 s~~~IA~~~~i~------~~-~l~kIl~~L~~aGlv~s~r-G-~GGy~Lar~   67 (145)
T 1xd7_A           25 SSEIIADSVNTN------PV-VVRRMISLLKKADILTSRA-G-VPGASLKKD   67 (145)
T ss_dssp             CHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEECCS-S-SSSCEESSC
T ss_pred             CHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEeec-C-CCCceecCC
Confidence            999999999997      88 9999999999999999642 3 577887643

>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28

Probab=92.14  E-value=0.1  Score=43.43  Aligned_cols=64  Identities=14%  Similarity=0.020  Sum_probs=48.3

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      +..++..|...   ++.|..+||+.++++      +. .+.++++.|...|+|.+...+.++   .+.+|+.|..+.
T Consensus        50 q~~iL~~L~~~---~~~t~~eLa~~l~i~------~s-tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~  116 (207)
T 2fxa_A           50 EHHILWIAYQL---NGASISEIAKFGVMH------VS-TAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF  116 (207)
T ss_dssp             HHHHHHHHHHH---TSEEHHHHHHHTTCC------HH-HHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred             HHHHHHHHHHC---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence            44567777665   489999999999997      77 899999999999999975322222   577888887444

>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A

Probab=92.12  E-value=0.041  Score=46.62  Aligned_cols=67  Identities=7%  Similarity=0.182  Sum_probs=49.9

Q ss_pred             HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC------Ccceecc
Q 018405           28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG------QRLYSLA  101 (356)
Q Consensus        28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~------~~~y~~t  101 (356)
                      .+|.--.++.|+..|..    +|.|+.+||+.+|++      +. .+.+.|+.|...|++......+      .-.|+++
T Consensus         7 kaL~~~~R~~IL~~L~~----g~~s~~ELa~~lglS------~s-tVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt   75 (232)
T 2qlz_A            7 YILGNKVRRDLLSHLTC----MECYFSLLSSKVSVS------ST-AVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKIS   75 (232)
T ss_dssp             HHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCCC------HH-HHHHHHHHHHHTTSEEEEEECC-----CEEEEEEC
T ss_pred             HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEc
Confidence            33444456667788875    589999999999997      77 8999999999999999622222      1247877


Q ss_pred             hhch
Q 018405          102 SVAK  105 (356)
Q Consensus       102 ~~~~  105 (356)
                      +.+.
T Consensus        76 ~~~~   79 (232)
T 2qlz_A           76 IAKS   79 (232)
T ss_dssp             CCEE
T ss_pred             cchh
Confidence            7654

>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}

Probab=92.12  E-value=0.11  Score=41.46  Aligned_cols=67  Identities=9%  Similarity=0.130  Sum_probs=46.8

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++.++..|...+ +++.|..+||+.++++      +. .+.++++.|+..|+|.+...+.++   .+.+|+.|..+.
T Consensus        47 ~q~~vL~~l~~~~-~~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~  116 (168)
T 3u2r_A           47 QQYNTLRLLRSVH-PEGMATLQIADRLISR------AP-DITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLL  116 (168)
T ss_dssp             HHHHHHHHHHHHT-TSCEEHHHHHHHC---------CT-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHH
Confidence            4455667776631 0489999999999997      66 899999999999999975433322   467788877444

>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}

Probab=92.03  E-value=0.13  Score=34.65  Aligned_cols=55  Identities=16%  Similarity=0.308  Sum_probs=43.6

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      +-.|+++|.+.|  .|++..+||+.+|++      .. -+.+.|..|-..|.|.+.   ..-.|.++
T Consensus        21 eekVLe~LkeaG--~PlkageIae~~Gvd------KK-eVdKaik~LKkEgkI~SP---kRCyw~~~   75 (80)
T 2lnb_A           21 EQRILQVLTEAG--SPVKLAQLVKECQAP------KR-ELNQVLYRMKKELKVSLT---SPATWCLG   75 (80)
T ss_dssp             HHHHHHHHHHHT--SCEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEE---ETTEEEES
T ss_pred             HHHHHHHHHHcC--CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHcCCccCC---CCceeeCC
Confidence            445677777765  699999999999997      56 899999999999999953   23566654

>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A

Probab=91.94  E-value=0.073  Score=39.95  Aligned_cols=61  Identities=16%  Similarity=0.192  Sum_probs=43.8

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCC----CCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcc---eecchhchHhh
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIP----LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRL---YSLASVAKYFV  108 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~----~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~---y~~t~~~~~l~  108 (356)
                      ..++..|...   ++.|..+||+.++    ++      +. .+.++|+.|...|+|.+...  +.+   +.+|+.|..+.
T Consensus        13 ~~vL~~l~~~---~~~t~~ela~~l~~~~~~s------~~-tv~~~l~~L~~~Glv~r~~~--~rr~~~~~lT~~g~~~~   80 (123)
T 1okr_A           13 WEVMNIIWMK---KYASANNIIEEIQMQKDWS------PK-TIRTLITRLYKKGFIDRKKD--NKIFQYYSLVEESDIKY   80 (123)
T ss_dssp             HHHHHHHHHH---SSEEHHHHHHHHHHHCCCC------HH-HHHHHHHHHHHHTSEEEEEE--TTEEEEEESSCHHHHHH
T ss_pred             HHHHHHHHhC---CCcCHHHHHHHHhccCCCc------Hh-hHHHHHHHHHHCCCeEEEec--CCeEEEEEecCHHHHHH
Confidence            3455556543   5899999999998    65      66 89999999999999997532  232   24666665443

>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19

Probab=91.92  E-value=0.37  Score=32.54  Aligned_cols=45  Identities=4%  Similarity=0.042  Sum_probs=35.5

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      +..|+.+||+++|++      .. -+.|.|..|...|+|...... +-.|+.+
T Consensus        28 ~~~Ta~~IAkkLg~s------K~-~vNr~LY~L~kkG~V~~~~~~-PP~W~~~   72 (75)
T 1sfu_A           28 DYTTAISLSNRLKIN------KK-KINQQLYKLQKEDTVKMVPSN-PPKWFKN   72 (75)
T ss_dssp             CEECHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEECCS-SCEEEEC
T ss_pred             cchHHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEecCCCC-CCCccCC
Confidence            459999999999997      66 899999999999999865322 3455443

>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}

Probab=91.62  E-value=0.25  Score=37.57  Aligned_cols=34  Identities=18%  Similarity=0.181  Sum_probs=31.0

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      ..|..+||+.++++      +. .+.+.++.|...|+|...
T Consensus        51 ~ps~~~LA~~l~~s------~~-~V~~~l~~Le~kGlI~~~   84 (128)
T 2vn2_A           51 FPTPAELAERMTVS------AA-ECMEMVRRLLQKGMIAIE   84 (128)
T ss_dssp             SCCHHHHHHTSSSC------HH-HHHHHHHHHHHTTSSEEC
T ss_pred             CCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence            36999999999998      77 899999999999999963

>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}

Probab=91.60  E-value=0.46  Score=35.41  Aligned_cols=69  Identities=20%  Similarity=0.235  Sum_probs=50.2

Q ss_pred             HHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC------CCCCCCchhHhhhHHHHHHHHhhCCcccceeeC---C--Ccc
Q 018405           29 AMHAVVELDVFEIISKAGAGAKLSVAEIVAQI------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD---G--QRL   97 (356)
Q Consensus        29 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~------~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~---~--~~~   97 (356)
                      +++-.+++=|+..|..    +|.+.-+|++.+      +++      +. .+...|+-|...|+|+.....   +  .-.
T Consensus         7 l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~is------~g-tlY~~L~rLe~~GlI~~~~~~~~~g~~rk~   75 (117)
T 4esf_A            7 MLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEVV------EG-TVYTILVRLEKKKLVNIEKKPSDMGPPRKF   75 (117)
T ss_dssp             HHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTCC------HH-HHHHHHHHHHHTTCEEEEEEC-----CEEE
T ss_pred             HHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCCC------cc-HHHHHHHHHHHCCCEEEEeecCCCCCCceE
Confidence            3444445556667776    589999999887      676      77 899999999999999975321   1  135


Q ss_pred             eecchhchHhh
Q 018405           98 YSLASVAKYFV  108 (356)
Q Consensus        98 y~~t~~~~~l~  108 (356)
                      |++|+.|+...
T Consensus        76 Y~LT~~G~~~l   86 (117)
T 4esf_A           76 YSLNEAGRQEL   86 (117)
T ss_dssp             EEECHHHHHHH
T ss_pred             EEECHHHHHHH
Confidence            99999997433

>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28

Probab=91.37  E-value=0.078  Score=42.90  Aligned_cols=68  Identities=10%  Similarity=0.096  Sum_probs=47.2

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .++.++..|...+..++.|..+||+.++++      +. .+.+.++.|+..|+|.+...+.+   -.+.+|+.|..+.
T Consensus        70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~is------~~-tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~  140 (181)
T 2fbk_A           70 AGWDLLLTLYRSAPPEGLRPTELSALAAIS------GP-STSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV  140 (181)
T ss_dssp             HHHHHHHHHHHHCCSSCBCHHHHHHHCSCC------SG-GGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            345567777765310129999999999997      66 88899999999999996422222   2467787776444

>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}

Probab=91.35  E-value=0.082  Score=43.01  Aligned_cols=65  Identities=18%  Similarity=0.274  Sum_probs=48.6

Q ss_pred             HHHhcCchhHHHhCCCCCCCCHHHHHHhCC-CCCCCchhHhhhHHHHHHHHhhCCcccceeeC--C---Ccceecchhch
Q 018405           32 AVVELDVFEIISKAGAGAKLSVAEIVAQIP-LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD--G---QRLYSLASVAK  105 (356)
Q Consensus        32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~--~---~~~y~~t~~~~  105 (356)
                      -=.++.|+..|.+    ++.|+.+|++.++ ++      .. .+.+.|+.|...|+|+...+.  .   +..|++++.+.
T Consensus        22 ~P~Rl~il~~L~~----~~~~~~~l~~~l~~~~------~~-~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~   90 (182)
T 4g6q_A           22 HPLRWRITQLLIG----RSLTTRELAELLPDVA------TT-TLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAG   90 (182)
T ss_dssp             SHHHHHHHHHTTT----SCEEHHHHHHHCTTBC------HH-HHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTT
T ss_pred             CHHHHHHHHHHHh----CCCCHHHHHHHhcCCC------HH-HHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccc
Confidence            3367778888876    5899999999996 76      56 799999999999999864321  1   24688776554


Q ss_pred             Hh
Q 018405          106 YF  107 (356)
Q Consensus       106 ~l  107 (356)
                      .+
T Consensus        91 ~~   92 (182)
T 4g6q_A           91 DA   92 (182)
T ss_dssp             TS
T ss_pred             cC
Confidence            33

>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61

Probab=91.09  E-value=0.43  Score=35.60  Aligned_cols=67  Identities=12%  Similarity=0.212  Sum_probs=49.4

Q ss_pred             HHHHhcCchhHHHhCCCCCCCCHHHHHHhCC--------CCCCCchhH-hhhHHHHHHHHhhCCcccceeeC--C--Ccc
Q 018405           31 HAVVELDVFEIISKAGAGAKLSVAEIVAQIP--------LKDNNPEAA-AMMLDRVLRLLVSYNALHCSFVD--G--QRL   97 (356)
Q Consensus        31 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~--------~~~~~~~~~-~~~l~r~L~~l~~~g~l~~~~~~--~--~~~   97 (356)
                      .-..++-|+..|..    +|.+.-+|++.+.        ++      + . .+.+.|+-|...|+|+.....  +  .-.
T Consensus        11 ~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~is------~~~-tly~~L~~Le~~GlI~~~~~~~~~~~r~~   79 (118)
T 2esh_A           11 GWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGIG------HMG-NIYRVLADLEESGFLSTEWDTTVSPPRKI   79 (118)
T ss_dssp             HHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTCC------CCC-CHHHHHHHHHHTTSEEEEEECSSSSCEEE
T ss_pred             cchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCCC------Ccc-hHHHHHHHHHHCCCeEEEeecCCCCCceE
Confidence            33455566777776    4899999999883        55      6 6 899999999999999975432  1  136


Q ss_pred             eecchhchHhh
Q 018405           98 YSLASVAKYFV  108 (356)
Q Consensus        98 y~~t~~~~~l~  108 (356)
                      |++|+.|..+.
T Consensus        80 Y~LT~~G~~~l   90 (118)
T 2esh_A           80 YRITPQGKLYL   90 (118)
T ss_dssp             EEECHHHHHHH
T ss_pred             EEEChHHHHHH
Confidence            89999997443

>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*

Probab=91.03  E-value=0.19  Score=39.24  Aligned_cols=45  Identities=24%  Similarity=0.353  Sum_probs=39.0

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +..|+..|.+.   ++.|..|||+.+|++      +. .+.+.++.|...|++..
T Consensus         5 ~~~il~~L~~~---~~~~~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~   49 (150)
T 2pn6_A            5 DLRILKILQYN---AKYSLDEIAREIRIP------KA-TLSYRIKKLEKDGVIKG   49 (150)
T ss_dssp             HHHHHHHHTTC---TTSCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEE
Confidence            45677788765   589999999999998      77 89999999999999983

>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2

Probab=90.86  E-value=0.21  Score=38.74  Aligned_cols=45  Identities=24%  Similarity=0.420  Sum_probs=38.7

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +..|++.|.+.   ++.|..|||+++|++      +. .+.+.++.|...|++..
T Consensus         7 d~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~   51 (144)
T 2cfx_A            7 DLNIIEELKKD---SRLSMRELGRKIKLS------PP-SVTERVRQLESFGIIKQ   51 (144)
T ss_dssp             HHHHHHHHHHC---SCCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEE
Confidence            34577778775   589999999999998      77 89999999999999983

>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}

Probab=90.73  E-value=0.2  Score=36.16  Aligned_cols=51  Identities=31%  Similarity=0.302  Sum_probs=38.7

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      .+..|++.|-+.   ++.|+.||++.++.+  .+-.+. -+.++|+-|+..|+|.+.
T Consensus        36 ~e~~VL~~L~~~---~~~t~~eL~~~l~~~--~~~s~s-TVt~~L~rLe~KGlV~R~   86 (99)
T 2k4b_A           36 AELIVMRVIWSL---GEARVDEIYAQIPQE--LEWSLA-TVKTLLGRLVKKEMLSTE   86 (99)
T ss_dssp             SCSHHHHHHHHH---SCEEHHHHHHTCCGG--GCCCHH-HHHHHHHHHHHTTSCEEE
T ss_pred             HHHHHHHHHHhC---CCCCHHHHHHHHhcc--cCCCHh-hHHHHHHHHHHCCCEEEE
Confidence            345677777664   589999999999742  000156 899999999999999965

>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0

Probab=90.61  E-value=0.26  Score=36.21  Aligned_cols=64  Identities=20%  Similarity=0.240  Sum_probs=46.3

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHh----CCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC----cceecchhch
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQ----IPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ----RLYSLASVAK  105 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~----~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~----~~y~~t~~~~  105 (356)
                      .++-|+..|..    +|.+--+|++.    ++++      +. .+.+.|+.|...|+|+......+    -.|++|+.|.
T Consensus        10 l~~~IL~~L~~----~~~~gyel~~~l~~~~~i~------~~-tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~   78 (108)
T 3l7w_A           10 IEYLILAIVSK----HDSYGYDISQTIKLIASIK------ES-TLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGE   78 (108)
T ss_dssp             HHHHHHHHHHH----SCEEHHHHHHHHTTTCCCC------HH-HHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHH
T ss_pred             HHHHHHHHHHc----CCCcHHHHHHHHHHHhCCC------cC-hHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHH
Confidence            44555666766    47777777777    4776      77 89999999999999997532212    2489999997


Q ss_pred             Hhh
Q 018405          106 YFV  108 (356)
Q Consensus       106 ~l~  108 (356)
                      ...
T Consensus        79 ~~l   81 (108)
T 3l7w_A           79 KHL   81 (108)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A

Probab=90.57  E-value=0.23  Score=38.81  Aligned_cols=45  Identities=11%  Similarity=0.191  Sum_probs=38.5

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +..|+..|.+.   ++.|..|||+++|++      +. .+.+.++.|...|++..
T Consensus         9 ~~~iL~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~   53 (150)
T 2w25_A            9 DRILVRELAAD---GRATLSELATRAGLS------VS-AVQSRVRRLESRGVVQG   53 (150)
T ss_dssp             HHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence            44567777765   589999999999998      77 89999999999999974

>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A

Probab=90.32  E-value=0.24  Score=39.25  Aligned_cols=45  Identities=13%  Similarity=0.313  Sum_probs=38.5

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +..|++.|.+.   ++.|..|||+++|++      +. .+.+.++.|...|++..
T Consensus        12 ~~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~   56 (162)
T 2p5v_A           12 DIKILQVLQEN---GRLTNVELSERVALS------PS-PCLRRLKQLEDAGIVRQ   56 (162)
T ss_dssp             HHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEee
Confidence            34567777765   589999999999998      77 89999999999999983

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=90.12  E-value=0.37  Score=37.60  Aligned_cols=109  Identities=15%  Similarity=0.173  Sum_probs=64.5

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCCC------CCcEE
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVP------EADTI  255 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~------~~D~i  255 (356)
                      ...+..+.  .-.+-|||+|-|+|..=-++.+.+|+.++.++|..-.+.-...-+.-.++.||+.+..|      ...+.
T Consensus        31 ~~a~~~v~--~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~  108 (174)
T 3iht_A           31 EHAIAQTA--GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRETLPATLERFGATAS  108 (174)
T ss_dssp             HHHHHHTT--TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHHCSCEE
T ss_pred             HHHHHHhc--CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHHHHHHHHHhcCCceE
Confidence            34444443  34567999999999999999999999999999942111111111345678888776222      11344


Q ss_pred             EecccccCCChHHHHHHHH----HHHHhCCCCCEEEEEecc
Q 018405          256 LMKWVLSSFDDEQSLKLLK----NCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       256 ~~~~vlh~~~~~~~~~~L~----~~~~~L~pgG~lii~e~~  292 (356)
                      +...=+-.-..++-.....    -+..+|.|||.++--.+.
T Consensus       109 LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl  149 (174)
T 3iht_A          109 LVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM  149 (174)
T ss_dssp             EEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred             EEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence            4333333223333333333    344567888888775554

>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36

Probab=90.08  E-value=0.91  Score=34.77  Aligned_cols=47  Identities=15%  Similarity=0.318  Sum_probs=36.8

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC-cceecch
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ-RLYSLAS  102 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~-~~y~~t~  102 (356)
                      ++.|..|||+.+|++      +. .+.+.++.|...|++.....+++ ..|.++.
T Consensus        40 ~~~t~~ela~~l~~~------~s-tvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~   87 (152)
T 1ku9_A           40 KPLTISDIMEELKIS------KG-NVSMSLKKLEELGFVRKVWIKGERKNYYEAV   87 (152)
T ss_dssp             SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred             CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence            589999999999997      77 89999999999999996421222 3455543

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=90.05  E-value=0.6  Score=40.06  Aligned_cols=94  Identities=19%  Similarity=0.210  Sum_probs=64.1

Q ss_pred             CCceEEEEcCCccHHHHHHHHh-------CCCCeEEEcc----chHH------------------------HH-------
Q 018405          193 HVKKLVDVGGGLGATLNMIISK-------YPRIKGINYD----LPYV------------------------IK-------  230 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~-------~p~~~~~~~D----~~~~------------------------~~-------  230 (356)
                      -++.|+|+|+-.|..+..++..       .++.++.++|    +|..                        ++       
T Consensus        69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~  148 (257)
T 3tos_A           69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE  148 (257)
T ss_dssp             SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence            4579999999999988886642       4667888888    2221                        01       


Q ss_pred             hCCC----CCCceEEEccCCCC-------CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          231 NAPS----YLGIEHVGGDFFES-------VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       231 ~a~~----~~~v~~~~~D~~~~-------~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      ..+.    .++|+++.|++.+.       .|..  |++.+=.-.+    +.....|+.+...|+|||.+++-+
T Consensus       149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y----~~t~~~le~~~p~l~~GGvIv~DD  217 (257)
T 3tos_A          149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY----EPTKAVLEAIRPYLTKGSIVAFDE  217 (257)
T ss_dssp             TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc----chHHHHHHHHHHHhCCCcEEEEcC
Confidence            0011    16799999998762       2332  7776644221    446788999999999999998844

>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*

Probab=89.97  E-value=0.55  Score=33.87  Aligned_cols=41  Identities=15%  Similarity=0.150  Sum_probs=32.5

Q ss_pred             HHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHh
Q 018405           31 HAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLV   82 (356)
Q Consensus        31 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~   82 (356)
                      ..+.++||+..|..    |..|..|||+.+|++      .. .+.|+=++|.
T Consensus        43 ~l~~R~~l~~~L~~----ge~TQREIA~~lGiS------~s-tISRi~r~L~   83 (101)
T 1jhg_A           43 ALGTRVRIIEELLR----GEMSQRELKNELGAG------IA-TITRGSNSLK   83 (101)
T ss_dssp             HHHHHHHHHHHHHH----CCSCHHHHHHHHCCC------HH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc----CCcCHHHHHHHHCCC------hh-hhhHHHHHHH
Confidence            44567999999988    479999999999997      55 7777655553

>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2

Probab=89.93  E-value=0.25  Score=38.62  Aligned_cols=45  Identities=16%  Similarity=0.243  Sum_probs=38.5

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +..|++.|.+.   ++.|..|||+.+|++      +. .+.+.++.|...|++..
T Consensus         9 ~~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~   53 (151)
T 2cyy_A            9 DKKIIKILQND---GKAPLREISKITGLA------ES-TIHERIRKLRESGVIKK   53 (151)
T ss_dssp             HHHHHHHHHHC---TTCCHHHHHHHHCSC------HH-HHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEE
Confidence            44567777765   589999999999998      77 89999999999999983

>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}

Probab=89.72  E-value=0.33  Score=30.59  Aligned_cols=44  Identities=11%  Similarity=0.204  Sum_probs=37.9

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      -.|++.+..+|  |-+.+..+++..|++      +. .+..+|+.|...|++.
T Consensus        13 ~~lL~yIr~sG--GildI~~~a~kygV~------kd-eV~~~LrrLe~KGLI~   56 (59)
T 2xvc_A           13 RELLDYIVNNG--GFLDIEHFSKVYGVE------KQ-EVVKLLEALKNKGLIA   56 (59)
T ss_dssp             HHHHHHHHHTT--SEEEHHHHHHHHCCC------HH-HHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHcC--CEEeHHHHHHHhCCC------HH-HHHHHHHHHHHCCCee
Confidence            34677787765  899999999999997      66 8999999999999987

>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}

Probab=89.68  E-value=0.29  Score=38.16  Aligned_cols=45  Identities=13%  Similarity=0.281  Sum_probs=38.5

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +..|+..|.+.   ++.|..|||+++|++      +. .+.+.++.|...|++..
T Consensus        11 d~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~   55 (151)
T 2dbb_A           11 DMQLVKILSEN---SRLTYRELADILNTT------RQ-RIARRIDKLKKLGIIRK   55 (151)
T ss_dssp             HHHHHHHHHHC---TTCCHHHHHHHTTSC------HH-HHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence            44577777775   589999999999998      77 89999999999999983

>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*

Probab=89.55  E-value=0.34  Score=37.68  Aligned_cols=65  Identities=17%  Similarity=0.275  Sum_probs=39.3

Q ss_pred             cCchhHHHhCCC--CCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           36 LDVFEIISKAGA--GAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        36 lglf~~L~~~~~--~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      ..++..|...+.  +++.|..+||+.++++      +. .+.++++.|+..|+|.... +.++   ...+|+.|..+.
T Consensus        36 ~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~------~~-tvsr~v~~Le~~glVr~~~-~~DrR~~~v~LT~~G~~~~  105 (148)
T 4fx0_A           36 FSTLAVISLSEGSAGIDLTMSELAARIGVE------RT-TLTRNLEVMRRDGLVRVMA-GADARCKRIELTAKGRAAL  105 (148)
T ss_dssp             HHHHHHHHC---------CHHHHHHHHTCC------HH-HHHHHHHHHHHTTSBC------------CCBCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEEeeC-CCCCCeeEEEECHHHHHHH
Confidence            334455544321  2468999999999998      77 8999999999999996422 2222   356677776443

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=89.54  E-value=1.8  Score=38.30  Aligned_cols=89  Identities=16%  Similarity=0.127  Sum_probs=55.1

Q ss_pred             ceEEEEcCCc-c-HHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCCcEEEecccccCCChHHHH
Q 018405          195 KKLVDVGGGL-G-ATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEADTILMKWVLSSFDDEQSL  270 (356)
Q Consensus       195 ~~vLDiG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~D~i~~~~vlh~~~~~~~~  270 (356)
                      .+|.=||+|. | .++..+.+.....+++++|. +..++.+.+..-+.-...|..+ ...++|+|+++-     +.....
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~~  108 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFR  108 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHHH
Confidence            6899999883 3 34555555433337889995 6666655433222222333333 233459998763     445567


Q ss_pred             HHHHHHHHhCCCCCEEEE
Q 018405          271 KLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       271 ~~L~~~~~~L~pgG~lii  288 (356)
                      .+++++...++|+..++-
T Consensus       109 ~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A          109 EIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             HHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHhhccCCCcEEEE
Confidence            889999999999875544

>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2

Probab=89.50  E-value=0.26  Score=38.53  Aligned_cols=45  Identities=11%  Similarity=0.172  Sum_probs=38.5

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +..|+..|.+.   ++.|..|||+++|++      +. .+.+.++.|...|++..
T Consensus        10 d~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~   54 (152)
T 2cg4_A           10 DRGILEALMGN---ARTAYAELAKQFGVS------PE-TIHVRVEKMKQAGIITG   54 (152)
T ss_dssp             HHHHHHHHHHC---TTSCHHHHHHHHTSC------HH-HHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHcCCcce
Confidence            34567777775   589999999999998      77 89999999999999993

>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}

Probab=89.49  E-value=0.3  Score=38.72  Aligned_cols=44  Identities=14%  Similarity=0.289  Sum_probs=38.9

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      +..|++.|.+.   ++.|..+||+++|++      +. .+++-++.|...|++.
T Consensus         5 d~~il~~L~~~---~~~s~~~la~~lg~s------~~-tv~~rl~~L~~~g~i~   48 (162)
T 3i4p_A            5 DRKILRILQED---STLAVADLAKKVGLS------TT-PCWRRIQKMEEDGVIR   48 (162)
T ss_dssp             HHHHHHHHTTC---SCSCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHC---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCee
Confidence            45678888775   589999999999998      77 8999999999999998

>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A

Probab=89.46  E-value=0.33  Score=39.73  Aligned_cols=50  Identities=4%  Similarity=0.147  Sum_probs=42.1

Q ss_pred             HHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           30 MHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        30 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      +....+..|+..|.+    ++.|..|||+.+|++      +. .+.+.++.|...|++...
T Consensus        17 l~d~~~~~IL~~L~~----~~~s~~eLA~~lglS------~s-tv~~~l~~Le~~GlI~~~   66 (192)
T 1uly_A           17 MLEDTRRKILKLLRN----KEMTISQLSEILGKT------PQ-TIYHHIEKLKEAGLVEVK   66 (192)
T ss_dssp             HHSHHHHHHHHHHTT----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred             hCCHHHHHHHHHHHc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence            334456678888874    589999999999998      77 899999999999999964

>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2

Probab=89.40  E-value=0.29  Score=37.61  Aligned_cols=45  Identities=16%  Similarity=0.295  Sum_probs=37.7

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +..|+..|...   ++.|..|||+.+|++      +. .+.+.|+.|...|++..
T Consensus         6 ~~~il~~L~~~---~~~~~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~   50 (141)
T 1i1g_A            6 DKIILEILEKD---ARTPFTEIAKKLGIS------ET-AVRKRVKALEEKGIIEG   50 (141)
T ss_dssp             HHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHHTSSCC
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEec
Confidence            34566677664   589999999999998      77 89999999999999983

>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50

Probab=89.36  E-value=0.29  Score=35.39  Aligned_cols=35  Identities=11%  Similarity=0.237  Sum_probs=32.2

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      ++.|..|||+.+|++      +. -+.+.|+.|...|++...
T Consensus        35 ~~~t~~ela~~l~is------~~-tv~~~l~~L~~~g~v~~~   69 (109)
T 2d1h_A           35 KPITSEELADIFKLS------KT-TVENSLKKLIELGLVVRT   69 (109)
T ss_dssp             SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred             CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEee
Confidence            589999999999997      77 899999999999999964

>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*

Probab=89.13  E-value=1  Score=33.34  Aligned_cols=70  Identities=17%  Similarity=0.308  Sum_probs=50.3

Q ss_pred             HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC--------CCCCCCchhHhhhHHHHHHHHhhCCcccceeeC---C--
Q 018405           28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI--------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD---G--   94 (356)
Q Consensus        28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~---~--   94 (356)
                      ++++-..++=|+..|.+    +|.+--+|.+.+        +++      +. .+.+.|+-|...|+|+.....   +  
T Consensus         7 ~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i~------~g-tly~~L~rLe~~GlI~~~~~~~~~~~~   75 (116)
T 3f8b_A            7 EMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMELN------EA-TLYTIFKRLEKDGIISSYWGDESQGGR   75 (116)
T ss_dssp             HHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCCC------HH-HHHHHHHHHHHTTSEEEEEEC----CC
T ss_pred             HHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCCC------cc-hHHHHHHHHHHCCCEEEEeeccCCCCC
Confidence            34444455556667776    588999998887        565      77 899999999999999975321   1  


Q ss_pred             CcceecchhchHhh
Q 018405           95 QRLYSLASVAKYFV  108 (356)
Q Consensus        95 ~~~y~~t~~~~~l~  108 (356)
                      .-.|++|+.|+...
T Consensus        76 rk~Y~LT~~G~~~l   89 (116)
T 3f8b_A           76 RKYYRLTEIGHENM   89 (116)
T ss_dssp             EEEEEECHHHHHHH
T ss_pred             ceEEEECHHHHHHH
Confidence            13599999997433

>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28

Probab=89.12  E-value=0.43  Score=40.83  Aligned_cols=67  Identities=16%  Similarity=0.163  Sum_probs=48.9

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .+..++..|...+ +++.|..|||+.++++      +. .+.++++-|...|+|.+...+.+.   ...+|+.|..+.
T Consensus       159 ~q~~vL~~L~~~~-~~~~t~~eLa~~l~i~------~~-tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~  228 (250)
T 1p4x_A          159 VEFTILAIITSQN-KNIVLLKDLIETIHHK------YP-QTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA  228 (250)
T ss_dssp             HHHHHHHHHHTTT-TCCEEHHHHHHHSSSC------HH-HHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CCCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence            3445667776642 0259999999999998      77 899999999999999986433333   355677776444

>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}

Probab=88.93  E-value=0.35  Score=38.75  Aligned_cols=46  Identities=13%  Similarity=0.330  Sum_probs=39.1

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      .+..|++.|...   ++.|..|||+++|++      +. .+.+.++.|...|++..
T Consensus        18 ~d~~IL~~L~~~---~~~s~~eLA~~lglS------~~-tv~~~l~~L~~~G~I~~   63 (171)
T 2ia0_A           18 LDRNILRLLKKD---ARLTISELSEQLKKP------ES-TIHFRIKKLQERGVIER   63 (171)
T ss_dssp             HHHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEe
Confidence            344577788775   589999999999998      77 89999999999999983

>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0

Probab=88.82  E-value=0.75  Score=34.18  Aligned_cols=70  Identities=17%  Similarity=0.180  Sum_probs=50.3

Q ss_pred             HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC------CCCCCCchhHhhhHHHHHHHHhhCCcccceeeC---C--Cc
Q 018405           28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD---G--QR   96 (356)
Q Consensus        28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~------~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~---~--~~   96 (356)
                      ++++-..++=|+..|.+    +|.+--+|++.+      +++      +. .+...|+-|...|+|+.....   +  ..
T Consensus         8 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~is------~g-tlY~~L~rLe~~GlI~~~~~~~~~g~~rk   76 (116)
T 3hhh_A            8 ELLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEIV------EG-TVYTILLRLEKNQWVIAEKKPSEKGPMRK   76 (116)
T ss_dssp             HHHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSCC------HH-HHHHHHHHHHHTTSEEEEEEECC--CEEE
T ss_pred             HHHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCCC------cc-HHHHHHHHHHHCCCEEEEeeecCCCCCce
Confidence            33444445556667776    588999999987      565      77 899999999999999975321   1  13


Q ss_pred             ceecchhchHhh
Q 018405           97 LYSLASVAKYFV  108 (356)
Q Consensus        97 ~y~~t~~~~~l~  108 (356)
                      .|++|+.|+...
T Consensus        77 ~Y~lT~~G~~~l   88 (116)
T 3hhh_A           77 FYRLTSSGEAEL   88 (116)
T ss_dssp             EEEECHHHHHHH
T ss_pred             EEEECHHHHHHH
Confidence            599999997433

>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2

Probab=88.19  E-value=0.48  Score=39.90  Aligned_cols=54  Identities=7%  Similarity=0.105  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhhh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVR  109 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~~  109 (356)
                      ++.|..++|+.++++      +. .+.+.++.|...|++.+...+....+.+|+.|..+..
T Consensus        26 ~~~s~s~aA~~L~is------q~-avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~   79 (230)
T 3cta_A           26 AYLTSSKLADMLGIS------QQ-SASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLY   79 (230)
T ss_dssp             EECCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred             CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHH
Confidence            368999999999998      77 8999999999999999642112356889999985553

>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}

Probab=87.98  E-value=0.64  Score=35.64  Aligned_cols=34  Identities=9%  Similarity=0.123  Sum_probs=31.4

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      ..|.++||+.+|++      +. -+.+.|+.|...|++...
T Consensus        51 ~ps~~~LA~~~~~s------~~-~v~~~L~~L~~KGlI~i~   84 (135)
T 2v79_A           51 FPTPNQLQEGMSIS------VE-ECTNRLRMFIQKGFLFIE   84 (135)
T ss_dssp             SCCHHHHHTTSSSC------HH-HHHHHHHHHHHHTSCEEE
T ss_pred             CCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence            57999999999998      77 899999999999999974

>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}

Probab=87.80  E-value=0.39  Score=35.79  Aligned_cols=70  Identities=13%  Similarity=0.234  Sum_probs=51.5

Q ss_pred             HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCC------CCCCCchhHhhhHHHHHHHHhhCCcccceeeC---C--Cc
Q 018405           28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIP------LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD---G--QR   96 (356)
Q Consensus        28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~------~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~---~--~~   96 (356)
                      +++.-..++-|+..|..    +|.+.-+|++.+.      ++      +. .+.+.|+.|...|+|+.....   +  ..
T Consensus         9 ~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i~------~g-tly~~L~~Le~~GlI~~~~~~~~~~~~rk   77 (117)
T 3elk_A            9 RILHGLITLYILKELVK----RPMHGYELQKSMFETTGQALP------QG-SIYILLKTMKERGFVISESSVNEKGQQLT   77 (117)
T ss_dssp             HHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCCC------TT-HHHHHHHHHHHHTSEEEEEEEC-CCCEEE
T ss_pred             HHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCCC------cc-hHHHHHHHHHHCCCEEEEeeecCCCCCce
Confidence            44455556667777776    5889999998875      65      56 899999999999999975321   1  13


Q ss_pred             ceecchhch-Hhh
Q 018405           97 LYSLASVAK-YFV  108 (356)
Q Consensus        97 ~y~~t~~~~-~l~  108 (356)
                      .|++|+.|+ .+.
T Consensus        78 ~Y~lT~~G~~~l~   90 (117)
T 3elk_A           78 VYHITDAGKKFLC   90 (117)
T ss_dssp             EEEECHHHHHHHH
T ss_pred             EEEECHHHHHHHH
Confidence            699999998 444

>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61

Probab=87.67  E-value=0.65  Score=37.41  Aligned_cols=60  Identities=12%  Similarity=0.237  Sum_probs=45.6

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhC--------CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-----Ccceecc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQI--------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-----QRLYSLA  101 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-----~~~y~~t  101 (356)
                      ++-|+..|..    +|.+.-||++.+        +++      +. .+.+.|+-|...|+|+......     ...|++|
T Consensus         4 ~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~s------~~-~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT   72 (179)
T 1yg2_A            4 PHVILTVLST----RDATGYDITKEFSASIGYFWKAS------HQ-QVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSIT   72 (179)
T ss_dssp             HHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCCC------HH-HHHHHHHHHHHTTSEEECCC---------CEEEC
T ss_pred             HHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCCC------cC-cHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeC
Confidence            3446667776    599999999988        565      67 8999999999999999643211     2369999


Q ss_pred             hhch
Q 018405          102 SVAK  105 (356)
Q Consensus       102 ~~~~  105 (356)
                      +.|+
T Consensus        73 ~~G~   76 (179)
T 1yg2_A           73 QAGR   76 (179)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            9997

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=87.24  E-value=0.55  Score=40.34  Aligned_cols=51  Identities=16%  Similarity=0.146  Sum_probs=38.8

Q ss_pred             HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC
Q 018405          179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP  233 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~  233 (356)
                      ..+..+++.+.  .+...|||..||+|..+....+.  +.+++++|+ +..++.++
T Consensus       200 ~l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~  251 (260)
T 1g60_A          200 DLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN  251 (260)
T ss_dssp             HHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence            45566666553  46689999999999999987774  568999996 77766654

>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61

Probab=86.77  E-value=0.52  Score=36.61  Aligned_cols=65  Identities=14%  Similarity=0.206  Sum_probs=48.4

Q ss_pred             HHhcCchhHHHhCCCCCCCCHHHHHHhC--------CCCCCCchhHhhhHHHHHHHHhhCCcccceeeC---C--Cccee
Q 018405           33 VVELDVFEIISKAGAGAKLSVAEIVAQI--------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD---G--QRLYS   99 (356)
Q Consensus        33 a~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~---~--~~~y~   99 (356)
                      -.++-|+..|.+    +|.+.-||++.+        +++      +. .+.+.|+-|...|+|++....   +  .-.|+
T Consensus        41 ~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~is------~g-tLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~  109 (145)
T 1xma_A           41 YVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVIK------ET-TLYSAFARLEKNGYIKSYYGEETQGKRRTYYR  109 (145)
T ss_dssp             THHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCCC------HH-HHHHHHHHHHHTTSEEEEEEEEC--CEEEEEE
T ss_pred             cHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCcC------hh-HHHHHHHHHHHCCCEEEEEeccCCCCCeEEEE
Confidence            355666677766    488989988887        576      77 899999999999999875322   1  14699


Q ss_pred             cchhchHhh
Q 018405          100 LASVAKYFV  108 (356)
Q Consensus       100 ~t~~~~~l~  108 (356)
                      +|+.|+.+.
T Consensus       110 LT~~G~~~l  118 (145)
T 1xma_A          110 ITPEGIKYY  118 (145)
T ss_dssp             ECHHHHHHH
T ss_pred             ECHHHHHHH
Confidence            999997444

>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85

Probab=86.67  E-value=0.46  Score=33.64  Aligned_cols=47  Identities=21%  Similarity=0.306  Sum_probs=37.9

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      ++.|+..|.+.+. .+++..||+++++++      .. -+.+.|+.|...|+|.+
T Consensus        22 q~~Vl~~I~~~g~-~gi~qkeLa~~~~l~------~~-tvt~iLk~LE~kglIkr   68 (91)
T 2dk5_A           22 EKLVYQIIEDAGN-KGIWSRDVRYKSNLP------LT-EINKILKNLESKKLIKA   68 (91)
T ss_dssp             HHHHHHHHHHHCT-TCEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHcCC-CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE
Confidence            3456677766311 379999999999997      66 89999999999999994

>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A

Probab=86.65  E-value=0.52  Score=39.69  Aligned_cols=47  Identities=13%  Similarity=0.199  Sum_probs=39.2

Q ss_pred             CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           52 SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        52 t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      +..+||+.++++      +. .+.+.|+.|...|++++.   .+..+.+|+.|..+.
T Consensus        26 ~~~~La~~l~vs------~~-tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~   72 (230)
T 1fx7_A           26 LRARIAERLDQS------GP-TVSQTVSRMERDGLLRVA---GDRHLELTEKGRALA   72 (230)
T ss_dssp             CHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEC---TTSCEEECHHHHHHH
T ss_pred             cHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEe---CCccEEECHHHHHHH
Confidence            449999999997      77 899999999999999953   346788999887554

>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6

Probab=86.10  E-value=0.4  Score=34.63  Aligned_cols=34  Identities=35%  Similarity=0.382  Sum_probs=30.4

Q ss_pred             CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      ..+ |..+||+.+|++      .. -+++-|+.|...|++..
T Consensus        33 ~~lps~~eLa~~~~vS------r~-tvr~al~~L~~~Gli~~   67 (102)
T 1v4r_A           33 DTLPSVADIRAQFGVA------AK-TVSRALAVLKSEGLVSS   67 (102)
T ss_dssp             SBCCCHHHHHHHSSSC------TT-HHHHHTTTTTTSSCCEE
T ss_pred             CCCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence            355 999999999997      66 89999999999999985

>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}

Probab=85.48  E-value=0.74  Score=34.97  Aligned_cols=51  Identities=10%  Similarity=0.096  Sum_probs=41.5

Q ss_pred             HHHHhcCchhHHHhCCCCCCCCHHHHHHhC-----CCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           31 HAVVELDVFEIISKAGAGAKLSVAEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        31 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      .+-.+.-|++.|.+.+  ++.|++||.+.+     +++      .. -+-|.|+.|+..|++.+.
T Consensus         9 ~T~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~is------~~-TVYR~L~~L~e~Glv~~~   64 (131)
T 2o03_A            9 STRQRAAISTLLETLD--DFRSAQELHDELRRRGENIG------LT-TVYRTLQSMASSGLVDTL   64 (131)
T ss_dssp             HHHHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCCC------HH-HHHHHHHHHHTTTSEEEE
T ss_pred             CCHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCC------Hh-hHHHHHHHHHHCCCEEEE
Confidence            3556777888887642  589999999998     675      66 899999999999999964

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=85.09  E-value=0.75  Score=37.62  Aligned_cols=34  Identities=18%  Similarity=-0.017  Sum_probs=31.1

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      .|.|..|||+++|++      .. .+.+.|+.|...|++..
T Consensus        23 ~~~s~~eia~~lgl~------~~-tv~~~l~~Le~~G~i~~   56 (196)
T 3k2z_A           23 YPPSVREIARRFRIT------PR-GALLHLIALEKKGYIER   56 (196)
T ss_dssp             SCCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEC
T ss_pred             CCCCHHHHHHHcCCC------cH-HHHHHHHHHHHCCCEEe
Confidence            378999999999997      66 79999999999999995

>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}

Probab=85.02  E-value=0.98  Score=34.69  Aligned_cols=45  Identities=9%  Similarity=0.120  Sum_probs=38.2

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      -.+.+.|.+    |+.|..+||+++|++      .. ..+-.|..|.-.|++.+..
T Consensus        14 ~~ILE~Lk~----G~~~t~~Iak~LGlS------hg-~aq~~Ly~LeREG~V~~Vk   58 (165)
T 2vxz_A           14 RDILALLAD----GCKTTSLIQQRLGLS------HG-RAKALIYVLEKEGRVTRVA   58 (165)
T ss_dssp             HHHHHHHTT----CCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSCEEEE
T ss_pred             HHHHHHHHh----CCccHHHHHHHhCCc------HH-HHHHHHHHHHhcCceEEEE
Confidence            346677774    699999999999998      67 8888899999999999653

>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*

Probab=84.98  E-value=1  Score=34.80  Aligned_cols=60  Identities=10%  Similarity=0.125  Sum_probs=44.2

Q ss_pred             HHHhcCchhHHHhCCCCCCCCHHHHHHhC-----CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-Ccceec
Q 018405           32 AVVELDVFEIISKAGAGAKLSVAEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-QRLYSL  100 (356)
Q Consensus        32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-~~~y~~  100 (356)
                      +-.+.-|++.|...+  ++.|++||.+.+     +++      .. -+-|.|+.|+..|++.+....+ ..+|.+
T Consensus        21 T~qR~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~is------~a-TVYR~L~~L~e~Glv~~~~~~~~~~~Y~~   86 (145)
T 2fe3_A           21 TPQRHAILEYLVNSM--AHPTADDIYKALEGKFPNMS------VA-TVYNNLRVFRESGLVKELTYGDASSRFDF   86 (145)
T ss_dssp             CHHHHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTCC------HH-HHHHHHHHHHHTTSEEEECCTTSCCEEEE
T ss_pred             CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCC------hh-hHHHHHHHHHHCCCEEEEeeCCCceEEEC
Confidence            345666888887642  589999999998     565      56 8999999999999999643221 234654

>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17

Probab=84.92  E-value=0.59  Score=31.81  Aligned_cols=42  Identities=5%  Similarity=0.074  Sum_probs=34.9

Q ss_pred             CCCCHHHHHHhCCC-CCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405           49 AKLSVAEIVAQIPL-KDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL  100 (356)
Q Consensus        49 ~~~t~~ela~~~~~-~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~  100 (356)
                      +.+++.++|+.+++ .      .+ ++-.++.+|.+.|++++   .+.+.|..
T Consensus        29 ~~i~l~~aa~~L~v~~------kR-RiYDI~NVLe~igli~K---~~k~~~~W   71 (76)
T 1cf7_A           29 GVLDLKLAADTLAVRQ------KR-RIYDITNVLEGIGLIEK---KSKNSIQW   71 (76)
T ss_dssp             TEEEHHHHHHHTTTCC------TH-HHHHHHHHHHHHTSEEE---EETTEEEE
T ss_pred             CcCcHHHHHHHhCCcc------ce-ehhhHHHHHhHhcceee---cCCCcEEE
Confidence            68999999999999 6      67 89999999999999995   33455653

>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A

Probab=84.74  E-value=1.3  Score=33.47  Aligned_cols=43  Identities=23%  Similarity=0.240  Sum_probs=34.8

Q ss_pred             CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405           49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL  100 (356)
Q Consensus        49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~  100 (356)
                      ..+ |..+||+.+|++      +. -+++-|+.|...|++...  .+.|.|-.
T Consensus        26 ~~LPse~~La~~~gvS------r~-tVr~Al~~L~~~Gli~~~--~g~G~~V~   69 (129)
T 2ek5_A           26 QRVPSTNELAAFHRIN------PA-TARNGLTLLVEAGILYKK--RGIGMFVS   69 (129)
T ss_dssp             SCBCCHHHHHHHTTCC------HH-HHHHHHHHHHTTTSEEEE--TTTEEEEC
T ss_pred             CcCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEEe--cCCEEEEe
Confidence            356 899999999998      77 899999999999999963  33455543

>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39

Probab=84.71  E-value=0.73  Score=35.27  Aligned_cols=47  Identities=17%  Similarity=0.166  Sum_probs=38.2

Q ss_pred             HhcCchhHHHh-CCCCCCCCHHHHHHhCC----CCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           34 VELDVFEIISK-AGAGAKLSVAEIVAQIP----LKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        34 ~~lglf~~L~~-~~~~~~~t~~ela~~~~----~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      .+..|+..|.+ .   ++.|..||++.++    ++      +. -+.++|+-|+..|+|.+.
T Consensus        10 ~e~~vL~~L~~~~---~~~t~~el~~~l~~~~~~~------~~-Tvt~~l~rLe~kGlv~r~   61 (138)
T 2g9w_A           10 LERAVMDHLWSRT---EPQTVRQVHEALSARRDLA------YT-TVMAVLQRLAKKNLVLQI   61 (138)
T ss_dssp             HHHHHHHHHHTCS---SCEEHHHHHHHHTTTCCCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHhcC---CCCCHHHHHHHHhccCCCC------HH-HHHHHHHHHHHCCCEEEE
Confidence            34556667765 3   4899999999997    65      66 899999999999999975

>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}

Probab=84.43  E-value=0.92  Score=33.43  Aligned_cols=42  Identities=12%  Similarity=0.234  Sum_probs=34.1

Q ss_pred             CC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405           50 KL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL  100 (356)
Q Consensus        50 ~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~  100 (356)
                      .+ |..+||+.+|++      +. -+++-|+.|...|+++..  .+.|.|-.
T Consensus        32 ~lPs~~~La~~~~vS------r~-tvr~al~~L~~~Gli~~~--~~~G~~V~   74 (113)
T 3tqn_A           32 MIPSIRKISTEYQIN------PL-TVSKAYQSLLDDNVIEKR--RGLGMLVK   74 (113)
T ss_dssp             EECCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred             cCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEe--cCCeEEEe
Confidence            55 899999999998      77 899999999999999853  33455543

>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1

Probab=84.42  E-value=0.93  Score=36.78  Aligned_cols=59  Identities=15%  Similarity=0.218  Sum_probs=44.7

Q ss_pred             HHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCc-ccceeeCCCcceecch
Q 018405           31 HAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNA-LHCSFVDGQRLYSLAS  102 (356)
Q Consensus        31 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~-l~~~~~~~~~~y~~t~  102 (356)
                      ..--...|.+.|.+.+  ++.|..|||+.+|++      +. -++|-++.|...|+ +..   . .+.|.+.+
T Consensus        19 ~~~R~~~Il~~L~~~~--~~~s~~eLa~~l~vS------~~-Ti~rdi~~L~~~G~~I~~---~-~~Gy~l~~   78 (187)
T 1j5y_A           19 RQERLKSIVRILERSK--EPVSGAQLAEELSVS------RQ-VIVQDIAYLRSLGYNIVA---T-PRGYVLAG   78 (187)
T ss_dssp             HHHHHHHHHHHHHHCS--SCBCHHHHHHHHTSC------HH-HHHHHHHHHHHHTCCCEE---E-TTEEECCT
T ss_pred             HHHHHHHHHHHHHHcC--CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEE---E-CCEEEECC
Confidence            3445667888887532  479999999999998      77 89999999999999 763   2 25576654

>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}

Probab=84.37  E-value=0.89  Score=33.70  Aligned_cols=63  Identities=13%  Similarity=0.177  Sum_probs=46.0

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCC------CCCCCchhHhhhHHHHHHHHhhCCcccceeeC---C--Ccceecchh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIP------LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD---G--QRLYSLASV  103 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~------~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~---~--~~~y~~t~~  103 (356)
                      ++-|+..|..    +|.+--+|++.+.      ++      +. .+.+.|+-|...|+|+.....   +  .-.|++|+.
T Consensus        11 ~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~is------~g-tlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~   79 (115)
T 4esb_A           11 EGCILYIISQ----EEVYGYELSTKLNKHGFTFVS------EG-SIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDK   79 (115)
T ss_dssp             HHHHHHHHHH----SCEEHHHHHHHHHHTTCTTCC------HH-HHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHH
T ss_pred             HHHHHHHHHc----CCCCHHHHHHHHHHcCCCCCC------cC-hHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHH
Confidence            3345556666    4888999998874      65      77 899999999999999975321   1  135999999


Q ss_pred             chHhh
Q 018405          104 AKYFV  108 (356)
Q Consensus       104 ~~~l~  108 (356)
                      |+...
T Consensus        80 G~~~l   84 (115)
T 4esb_A           80 GLEQL   84 (115)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            97433

>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}

Probab=84.08  E-value=1.3  Score=34.08  Aligned_cols=61  Identities=13%  Similarity=0.133  Sum_probs=44.7

Q ss_pred             HHHhcCchhHHHhCCCCCCCCHHHHHHhC-----CCCCCCchhHhhhHHHHHHHHhhCCcccceeeC-CCcceecc
Q 018405           32 AVVELDVFEIISKAGAGAKLSVAEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD-GQRLYSLA  101 (356)
Q Consensus        32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~-~~~~y~~t  101 (356)
                      +..+.-|++.|.+.+  ++.|++||.+.+     +++      .. -+-|.|+.|+..|++.+.... +..+|.+.
T Consensus        13 T~qR~~Il~~L~~~~--~h~sa~eI~~~l~~~~~~is------~a-TVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~   79 (139)
T 3mwm_A           13 TRQRAAVSAALQEVE--EFRSAQELHDMLKHKGDAVG------LT-TVYRTLQSLADAGEVDVLRTAEGESVYRRC   79 (139)
T ss_dssp             HHHHHHHHHHHTTCS--SCEEHHHHHHHHHHTTCCCC------HH-HHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred             CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCC------HH-HHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence            456677888887643  589999999887     454      55 799999999999999964322 22456553

>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...

Probab=84.01  E-value=1.4  Score=36.98  Aligned_cols=48  Identities=6%  Similarity=0.097  Sum_probs=40.1

Q ss_pred             CCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           51 LSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        51 ~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      .+..+||+.++++      +. .+.+.++.|...|++.+   ..+..+.+|+.|..+.
T Consensus        25 ~~~~~la~~l~vs------~~-tvs~~l~~Le~~GlV~r---~~~~~v~LT~~G~~~~   72 (226)
T 2qq9_A           25 PLRARIAERLEQS------GP-TVSQTVARMERDGLVVV---ASDRSLQMTPTGRTLA   72 (226)
T ss_dssp             CBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---CTTSBEEECHHHHHHH
T ss_pred             ccHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE---eCCCCeEECHHHHHHH
Confidence            3559999999998      77 89999999999999995   3346789999997554

>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1

Probab=83.75  E-value=0.87  Score=42.84  Aligned_cols=64  Identities=17%  Similarity=0.170  Sum_probs=46.3

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchH
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKY  106 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~  106 (356)
                      +..++..|.+.+ +++.|..|||+.++++      +. .+.|+++-|...|+|++...+.+.   .-.+|+.|+.
T Consensus       406 q~~vl~~l~~~~-~~~~~~~~l~~~~~~~------~~-~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~  472 (487)
T 1hsj_A          406 EIYILNHILRSE-SNEISSKEIAKCSEFK------PY-YLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKA  472 (487)
T ss_dssp             HHHHHHHHHTCS-CSEEEHHHHHHSSCCC------HH-HHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHH
T ss_pred             HHHHHHHHHhCC-CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHH
Confidence            445666776641 1479999999999998      77 899999999999999976433332   2445555543

>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A

Probab=83.65  E-value=0.69  Score=34.57  Aligned_cols=48  Identities=23%  Similarity=0.257  Sum_probs=38.7

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCC----CCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPL----KDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~----~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      .+..++..|.+.   +|.|..||++.++.    +      +. -+.++|+-|...|+|.+..
T Consensus        11 ~q~~vL~~L~~~---~~~t~~el~~~l~~~~~~~------~~-Tvt~~l~rLe~kGlv~R~~   62 (126)
T 1sd4_A           11 AEWDVMNIIWDK---KSVSANEIVVEIQKYKEVS------DK-TIRTLITRLYKKEIIKRYK   62 (126)
T ss_dssp             HHHHHHHHHHHS---SSEEHHHHHHHHHTTSCCC------HH-HHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHhc---CCCCHHHHHHHHhhcCCCC------hh-hHHHHHHHHHHCCceEEEe
Confidence            345566777665   58999999999974    4      66 8999999999999999753

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=83.58  E-value=6.2  Score=34.01  Aligned_cols=88  Identities=19%  Similarity=0.158  Sum_probs=51.8

Q ss_pred             ceEEEEcCCc-c-HHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCChHHHHH
Q 018405          195 KKLVDVGGGL-G-ATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLK  271 (356)
Q Consensus       195 ~~vLDiG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~  271 (356)
                      .+|.=||+|. | .++..+.+..++.+++++|. +...+.+.+.........|..+...++|+|++.     .+......
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~   81 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA-----VPIKKTID   81 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC-----SCHHHHHH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc-----CCHHHHHH
Confidence            5788899885 3 34555655544678888885 555544332211112223332222344988875     34455678


Q ss_pred             HHHHHHHh-CCCCCEEE
Q 018405          272 LLKNCYKA-LPDGGKLL  287 (356)
Q Consensus       272 ~L~~~~~~-L~pgG~li  287 (356)
                      +++++... ++|+..++
T Consensus        82 v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           82 FIKILADLDLKEDVIIT   98 (290)
T ss_dssp             HHHHHHTSCCCTTCEEE
T ss_pred             HHHHHHhcCCCCCCEEE
Confidence            88888888 88876554

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=83.53  E-value=4.6  Score=36.62  Aligned_cols=96  Identities=13%  Similarity=0.065  Sum_probs=60.9

Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCe-EEEccc-hHHHHhCCC-CCCceEEEccCCCC----C-------CCCcEEEeccc
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIK-GINYDL-PYVIKNAPS-YLGIEHVGGDFFES----V-------PEADTILMKWV  260 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~----~-------~~~D~i~~~~v  260 (356)
                      .+++|+-||.|.++..+..+.  .+ +.++|. +..++..+. .+...++.+|+.+-    .       ++.|+|+...-
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP   80 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP   80 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence            589999999999999998864  54 457775 555554433 25678888888762    1       22399988766


Q ss_pred             ccCCCh-------HHHHHHHH---HHHHhCCCCCEEEEEecccC
Q 018405          261 LSSFDD-------EQSLKLLK---NCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       261 lh~~~~-------~~~~~~L~---~~~~~L~pgG~lii~e~~~~  294 (356)
                      ...++.       +..-.++.   ++.+.++|  ++++.|.+..
T Consensus        81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~g  122 (376)
T 3g7u_A           81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVPG  122 (376)
T ss_dssp             CCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECTT
T ss_pred             CCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecchH
Confidence            665541       11222333   34444566  6777787653

>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A

Probab=82.95  E-value=0.86  Score=29.93  Aligned_cols=47  Identities=17%  Similarity=0.246  Sum_probs=38.7

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      +-.|++.|...   ||.++-.||+.+|+.  .   .. -+.+-|..|...|+|..+
T Consensus        12 ee~I~~fL~~~---Gp~~AL~IAK~LGlk--t---AK-~VNp~LY~m~~~~lL~~D   58 (72)
T 3eyi_A           12 EEDIYRFLKDN---GPQRALVIAQALGMR--T---AK-DVNRDLYRMKSRHLLDMD   58 (72)
T ss_dssp             HHHHHHHHHHH---CSEEHHHHHHHTTCC--S---GG-GTHHHHHHHHHTTSEEEC
T ss_pred             HHHHHHHHHHc---CCchHHHHHHHhCcc--h---hh-hcCHHHHHHHHccCcCCC
Confidence            44578888887   699999999999996  1   33 588999999999999754

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=82.90  E-value=2.8  Score=38.22  Aligned_cols=37  Identities=11%  Similarity=0.196  Sum_probs=28.3

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-------CCCeEEEccchH
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-------PRIKGINYDLPY  227 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-------p~~~~~~~D~~~  227 (356)
                      .+.+-+|+|+|+|.|.++..+++..       ..+++..++.+.
T Consensus        78 ~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp  121 (387)
T 1zkd_A           78 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP  121 (387)
T ss_dssp             CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred             CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence            3455689999999999999887652       345889998633

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=82.86  E-value=6.5  Score=35.11  Aligned_cols=93  Identities=13%  Similarity=0.041  Sum_probs=57.7

Q ss_pred             CCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEcc------CCCC----CCCC-cEEEe
Q 018405          191 FEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGD------FFES----VPEA-DTILM  257 (356)
Q Consensus       191 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D------~~~~----~~~~-D~i~~  257 (356)
                      .++..+||-+|+|. |.++..+++...-.+++++|. +.-.+.+++..--.++..+      ..+.    .+.+ |+|+-
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid  248 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE  248 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence            67788999999885 888888988764337888874 5545544433111222111      1100    1123 88765


Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      .-.     .   ...++.+.++|+|+|+++++..
T Consensus       249 ~~g-----~---~~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          249 CTG-----A---EASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             CSC-----C---HHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCC-----C---hHHHHHHHHHhcCCCEEEEEec
Confidence            322     1   3457788899999999998764

>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}

Probab=82.71  E-value=2.7  Score=26.39  Aligned_cols=43  Identities=19%  Similarity=0.213  Sum_probs=35.6

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS  102 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~  102 (356)
                      .+.|+.|+|...+++      -. ..+.-|+.|-..|-+.+   . ..+|++.|
T Consensus        17 QGMTaGEVAA~f~w~------Le-~ar~aLeqLf~~G~LRK---R-sSRYrlkp   59 (68)
T 3i71_A           17 QGMTAGEVAAHFGWP------LE-KARNALEQLFSAGTLRK---R-SSRYRLKP   59 (68)
T ss_dssp             TCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---E-CCEEEECC
T ss_pred             ccccHHHHHHHhCCc------HH-HHHHHHHHHHhcchhhh---h-ccccccCc
Confidence            589999999999996      55 77888999999999994   3 37888764

>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2

Probab=82.63  E-value=1.6  Score=35.80  Aligned_cols=48  Identities=19%  Similarity=0.172  Sum_probs=40.4

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      |.+..+||+.++++      +. -++..++-|...|+++++   . +...+|+.|..+.
T Consensus        30 ~V~~~~LA~~LgvS------~~-SV~~~lkkL~e~GLV~~~---~-~Gv~LTe~G~~~A   77 (200)
T 2p8t_A           30 PLGRKQISERLELG------EG-SVRTLLRKLSHLDIIRSK---Q-RGHFLTLKGKEIR   77 (200)
T ss_dssp             CBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEC------CEEECHHHHHHH
T ss_pred             CccHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEEe---C-CCeEECHHHHHHH
Confidence            89999999999998      77 899999999999999953   2 5678999887444

>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}

Probab=82.43  E-value=1.2  Score=33.53  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=34.5

Q ss_pred             CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCccee
Q 018405           49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYS   99 (356)
Q Consensus        49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~   99 (356)
                      ..+ |..+||+.+|++      +. -+++-|+.|...|++...  .+.|.|-
T Consensus        33 ~~lPse~~La~~~~vS------r~-tvr~Al~~L~~~Gli~~~--~g~G~~V   75 (126)
T 3by6_A           33 DQLPSVRETALQEKIN------PN-TVAKAYKELEAQKVIRTI--PGKGTFI   75 (126)
T ss_dssp             CEECCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred             CcCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEe--cCCeEEE
Confidence            356 999999999997      77 899999999999999963  3345554

>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}

Probab=82.41  E-value=1.6  Score=32.78  Aligned_cols=43  Identities=19%  Similarity=0.244  Sum_probs=34.9

Q ss_pred             CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405           49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL  100 (356)
Q Consensus        49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~  100 (356)
                      ..+ |..+||+.+|++      +. -+++-|..|...|+|...  .+.|.|-.
T Consensus        35 ~~Lps~~~La~~~~vS------r~-tvr~Al~~L~~~G~i~~~--~g~G~~V~   78 (125)
T 3neu_A           35 DKLPSVREMGVKLAVN------PN-TVSRAYQELERAGYIYAK--RGMGSFVT   78 (125)
T ss_dssp             CBCCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred             CCCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCeEEEe--cCCEEEEe
Confidence            355 699999999998      77 899999999999999963  34466644

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=81.56  E-value=3.9  Score=36.82  Aligned_cols=90  Identities=13%  Similarity=0.089  Sum_probs=56.9

Q ss_pred             CCceEEEEc--CCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEc--cCCC----CCCCC-cEEEeccccc
Q 018405          193 HVKKLVDVG--GGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGG--DFFE----SVPEA-DTILMKWVLS  262 (356)
Q Consensus       193 ~~~~vLDiG--~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~--D~~~----~~~~~-D~i~~~~vlh  262 (356)
                      +..+||-+|  +|.|.++..+++...+.++++++. +.-.+.+++..--.++..  |+.+    ..+.+ |+|+-+-   
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~---  247 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTT---  247 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECS---
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECC---
Confidence            567899998  457889999998766789999985 555555543321111111  1111    11223 7776532   


Q ss_pred             CCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          263 SFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                        .   ....++.+.+.|+|+|+++++.
T Consensus       248 --g---~~~~~~~~~~~l~~~G~iv~~g  270 (363)
T 4dvj_A          248 --H---TDKHAAEIADLIAPQGRFCLID  270 (363)
T ss_dssp             --C---HHHHHHHHHHHSCTTCEEEECS
T ss_pred             --C---chhhHHHHHHHhcCCCEEEEEC
Confidence              1   2457788899999999999873

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=81.54  E-value=3.9  Score=37.31  Aligned_cols=103  Identities=16%  Similarity=0.060  Sum_probs=63.3

Q ss_pred             HHhcCCCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CC---------CC-C
Q 018405          186 ESYKGFEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SV---------PE-A  252 (356)
Q Consensus       186 ~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~---------~~-~  252 (356)
                      +... +++..+||-+|+|. |.++..+++...-.+++++|. +.-.+.+++.. .+++  |..+ +.         +. +
T Consensus       179 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-a~~i--~~~~~~~~~~~~~~~~~g~g  254 (398)
T 2dph_A          179 VSAG-VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-FETI--DLRNSAPLRDQIDQILGKPE  254 (398)
T ss_dssp             HHTT-CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-CEEE--ETTSSSCHHHHHHHHHSSSC
T ss_pred             HHcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CcEE--cCCCcchHHHHHHHHhCCCC
Confidence            3344 77888999999986 888999998764338888884 66566655432 3332  2222 11         11 3


Q ss_pred             -cEEEecccccCC---C---hHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          253 -DTILMKWVLSSF---D---DEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       253 -D~i~~~~vlh~~---~---~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                       |+|+-.-.-...   +   .......++.+.+.|+|||+++++...
T Consensus       255 ~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          255 VDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             EEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred             CCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence             887654332110   0   000134688888999999999887654

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=80.92  E-value=2.5  Score=38.95  Aligned_cols=40  Identities=18%  Similarity=0.267  Sum_probs=32.2

Q ss_pred             CCCceEEEEcCCccHHHHHHH-HhCCC-CeEEEccc-hHHHHh
Q 018405          192 EHVKKLVDVGGGLGATLNMII-SKYPR-IKGINYDL-PYVIKN  231 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~  231 (356)
                      ++...++|||++.|.++..++ +..+. .+++.++. |...+.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~  267 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQT  267 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence            577899999999999999988 56665 78999994 665443

>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66

Probab=80.74  E-value=1.2  Score=32.10  Aligned_cols=34  Identities=18%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             CC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           50 KL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        50 ~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      .+ |..+||+.+|++      +. -+++-|+.|...|+|...
T Consensus        42 ~lps~~eLa~~lgVS------r~-tVr~al~~L~~~GlI~~~   76 (102)
T 2b0l_A           42 GLLVASKIADRVGIT------RS-VIVNALRKLESAGVIESR   76 (102)
T ss_dssp             EEECHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred             cCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence            45 999999999998      77 899999999999999964

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=80.62  E-value=8.3  Score=33.01  Aligned_cols=89  Identities=16%  Similarity=0.137  Sum_probs=50.7

Q ss_pred             ceEEEEcCCc-cH-HHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCC-CCcEEEecccccCCChHHHH
Q 018405          195 KKLVDVGGGL-GA-TLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVP-EADTILMKWVLSSFDDEQSL  270 (356)
Q Consensus       195 ~~vLDiG~G~-G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~-~~D~i~~~~vlh~~~~~~~~  270 (356)
                      .+|.=||+|. |. ++..+.+.....+++++|. +...+.+.+..-......|..+... ++|+|++.     .+.....
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~   76 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFR   76 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEc-----CCHHHHH
Confidence            3678888874 33 3334444322237888885 5555544332211111223322233 55998875     3545567


Q ss_pred             HHHHHHHHhCCCCCEEEE
Q 018405          271 KLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       271 ~~L~~~~~~L~pgG~lii  288 (356)
                      .+++++...++|+..++.
T Consensus        77 ~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           77 EIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             HHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHhhCCCCcEEEE
Confidence            888889889998875554

>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}

Probab=80.55  E-value=1.2  Score=33.26  Aligned_cols=42  Identities=10%  Similarity=0.033  Sum_probs=34.7

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      |.++.||++.++++      +. .++.||+.|+..|.+..   -.++.|..+
T Consensus        20 p~~~~~la~~~~~~------~~-~~~~~l~~l~~~G~l~~---i~~~~~~~~   61 (121)
T 2pjp_A           20 PWWVRDLAKETGTD------EQ-AMRLTLRQAAQQGIITA---IVKDRYYRN   61 (121)
T ss_dssp             CEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEE---EETTEEEEH
T ss_pred             CCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEE---ecCCceECH
Confidence            67999999999997      77 89999999999999994   334666544

>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}

Probab=80.39  E-value=1.5  Score=33.27  Aligned_cols=42  Identities=14%  Similarity=0.288  Sum_probs=34.7

Q ss_pred             CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCccee
Q 018405           49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYS   99 (356)
Q Consensus        49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~   99 (356)
                      ..+ |..+||+.+|++      +. -+++-|+.|...|++...  .+.|.|-
T Consensus        36 ~~LPser~La~~~gVS------r~-tVReAl~~L~~eGlv~~~--~g~G~~V   78 (134)
T 4ham_A           36 EKILSIREFASRIGVN------PN-TVSKAYQELERQEVIITV--KGKGTFI   78 (134)
T ss_dssp             CEECCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred             CCCccHHHHHHHHCCC------HH-HHHHHHHHHHHCCcEEEE--cCcEEEE
Confidence            356 889999999998      77 899999999999999963  4456665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	356
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	2e-70
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	7e-69
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	3e-64
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	1e-35
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	1e-30
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	3e-30
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	6e-28
d1fp2a1	101	a.4.5.29 (A:8-108) Isoflavone O-methyltransferase	7e-13
d1tw3a1	85	a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer	6e-08
d1qzza1	92	a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R	1e-06
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	5e-06
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	6e-06
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	3e-05

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  218 bits (555), Expect = 2e-70
 Identities = 100/243 (41%), Positives = 142/243 (58%), Gaps = 3/243 (1%)

Query: 116 SLRPYMALRLDKVPMDYWFRLKDQILEGG-TAFNKAHGMSIYDYMGVDSRFNDVFNTGML 174
            L  +         +  W   K+ +++     F   HG++ Y++MG D + N +FN  M+
Sbjct: 3   YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMV 62

Query: 175 GHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS 234
                 M+++LE Y GFE +  LVDVGGG G  L +IISKYP IKGIN+DLP VI+NAP 
Sbjct: 63  DVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 122

Query: 235 YLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP 294
             GIEHVGGD F SVP+ D +++K V  ++ DE+ ++ L NC+KAL   GK++ V   +P
Sbjct: 123 LSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP 182

Query: 295 EVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLY-VME 353
           E P  S  S+ +S LD   +F    GRERT+++Y +L+  +GF        A N   VME
Sbjct: 183 EEPNTSEESKLVSTLD-NLMFITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME 241

Query: 354 FLK 356
           F K
Sbjct: 242 FYK 244

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  214 bits (545), Expect = 7e-69
 Identities = 124/243 (51%), Positives = 170/243 (69%)

Query: 113 NGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTG 172
           +G S+     +  DKV M+ W+ LKD +L+GG  FNKA+GM+ ++Y G D RFN VFN G
Sbjct: 1   DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 60

Query: 173 MLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNA 232
           M  H+ + M+K+LE+Y GFE +K LVDVGGG GA +N I+SKYP IKGIN+DLP+VI++A
Sbjct: 61  MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 120

Query: 233 PSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292
           PSY G+EHVGGD F S+P+AD + MKW+   + DE  LK LKNCY+ALPD GK++     
Sbjct: 121 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180

Query: 293 IPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVM 352
           +P  P++S  ++ +  +D I L   P G+ERT++E+ +LA  AGF+G      A N Y+M
Sbjct: 181 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 240

Query: 353 EFL 355
           EFL
Sbjct: 241 EFL 243

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  202 bits (515), Expect = 3e-64
 Identities = 66/243 (27%), Positives = 125/243 (51%), Gaps = 6/243 (2%)

Query: 116 SLRPYMALRLDKVPMDYWFRLKDQILEGG-TAFNKAHGMSIYDYMGVDSRFNDVFNTGML 174
            L P +   LD      +  LK  I E   T F    G   +D++  +  +N  FN  M 
Sbjct: 2   CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMA 61

Query: 175 GHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS 234
             + ++   + +    F+ ++ +VDVGGG G T  +I   +P++K I +D P V++N   
Sbjct: 62  SDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG 121

Query: 235 YLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPD---GGKLLNVNV 291
              + +VGGD F S+P AD +L+K++L ++ D+  L++LK C +A+ +    GK+  +++
Sbjct: 122 SNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 181

Query: 292 TIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYV 351
            I +  + +  ++   ++D        +G+ER ++E+ +L I+AGF+          L +
Sbjct: 182 VIDKKKDENQVTQIKLLMDVNMA--CLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL 239

Query: 352 MEF 354
           +E 
Sbjct: 240 IEI 242

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score =  128 bits (322), Expect = 1e-35
 Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 18/254 (7%)

Query: 115 ASLRPYMALRLDKVPMDY-WFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGM 173
           A  R ++ L       D  +  L D +  G  A+   +G   ++ +  D    D F+  M
Sbjct: 3   AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALM 62

Query: 174 LGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAP 233
                +  E   ++Y  +  V+ ++DVGGG G  L  I  + P ++G   +L    + A 
Sbjct: 63  SCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERAR 121

Query: 234 SYLGIEHVGG--------DFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGK 285
                  +           F      AD +L+ +VL ++ DE +L +L+ C +AL  GG+
Sbjct: 122 RRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGR 181

Query: 286 LLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV----- 340
           L    V      E     R  S L  + +     GR RT+ E  +LA  AG         
Sbjct: 182 L---LVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTS 238

Query: 341 NYEYGACNLYVMEF 354
                  +  ++EF
Sbjct: 239 GSTTLPFDFSILEF 252

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score =  115 bits (287), Expect = 1e-30
 Identities = 47/235 (20%), Positives = 91/235 (38%), Gaps = 14/235 (5%)

Query: 115 ASLRPYMALRLDKVPMDY-WFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGM 173
           A+ R +  L       D  + RL D I  G   +   +G   Y+ +         F++ +
Sbjct: 2   AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLL 61

Query: 174 LGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAP 233
                V  +    +Y  + +V+ ++DVGGG G     I  + P +     ++   +  A 
Sbjct: 62  ACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTAR 120

Query: 234 SYLGIEHVGGDFFESVPEADT--------ILMKWVLSSFDDEQSLKLLKNCYKALPDGGK 285
           SYL  E +         +           I++ +VL ++ D  ++++L  C +AL  GG+
Sbjct: 121 SYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGR 180

Query: 286 LLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV 340
           +L            +    E+ +     +     G  RT++++  LA  AG    
Sbjct: 181 ILIHERDDLHENSFNEQFTELDLR----MLVFLGGALRTREKWDGLAASAGLVVE 231

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  109 bits (274), Expect = 3e-30
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 7/110 (6%)

Query: 8   EEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAG-AGAKLSVAEIVAQIPLKDNN 66
           + E +    AM L   +V PA ++A ++L++FEII+KA   GA +S +EI +++P    +
Sbjct: 1   QTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQH 60

Query: 67  PEAAAMMLDRVLRLLVSYNALHCSFVDG-----QRLYSLASVAKYFVRNN 111
            +     LDR+LRLL SY+ L  +         +R+Y L+ V KY V + 
Sbjct: 61  SDLPNR-LDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE 109

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  103 bits (258), Expect = 6e-28
 Identities = 51/109 (46%), Positives = 67/109 (61%), Gaps = 8/109 (7%)

Query: 7   QEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNN 66
              +     +AM+LA A VLP  + + +ELD+ EII+KAG GA++S  EI +Q+P    N
Sbjct: 1   HISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTT--N 58

Query: 67  PEAAAMMLDRVLRLLVSYNALHCSFV-----DGQRLYSLASVAKYFVRN 110
           P+A   MLDR+LRLL  Y  L CS         QRLY LA+VAKY V+N
Sbjct: 59  PDAPV-MLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKN 106

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 61.8 bits (150), Expect = 7e-13
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 18  MELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRV 77
            +   A +   ++   VE+++  II   G    +S++ +V+ + +    P +    + R+
Sbjct: 14  YKHIYAFIDSMSLKWAVEMNIPNIIQNHGKP--ISLSNLVSILQV----PSSKIGNVRRL 67

Query: 78  LRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNN 111
           +R L           +    Y+L   ++  VR +
Sbjct: 68  MRYLAHNGFFEIITKEE-ESYALTVASELLVRGS 100

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 47.5 bits (113), Expect = 6e-08
 Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 14/95 (14%)

Query: 16  YAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLD 75
             +   G++  P  +     L + + I         +V  + A+              L 
Sbjct: 4   RTLIRLGSLHTPMVVRTAATLRLVDHI----LAGARTVKALAARTD-------TRPEALL 52

Query: 76  RVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRN 110
           R++R LV+   L     D    +    V +    +
Sbjct: 53  RLIRHLVAIGLLEE---DAPGEFVPTEVGELLADD 84

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 12/101 (11%)

Query: 8   EEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNP 67
           E    +    ++  G +V P A+     L + + +         ++A +  +        
Sbjct: 2   EPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHL----LAGADTLAGLADRTDTH---- 53

Query: 68  EAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108
                 L R++R L     L        R      +     
Sbjct: 54  ---PQALSRLVRHLTVVGVLEGG-EKQGRPLRPTRLGMLLA 90

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 45.0 bits (105), Expect = 5e-06
 Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 11/156 (7%)

Query: 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPE--- 251
           ++++DV  G G   N       ++   +     +        G  H   ++ +   E   
Sbjct: 17  EEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 76

Query: 252 ---ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI 308
                  ++   +++         +   Y+ L  GG+LL V+ + PE          +  
Sbjct: 77  FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEK 136

Query: 309 LDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY 344
                     H R   K ++ ++  +AGF+      
Sbjct: 137 -----ERDYSHHRAWKKSDWLKMLEEAGFELEELHC 167

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.6 bits (104), Expect = 6e-06
 Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 17/159 (10%)

Query: 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNA--------PSYLGIEHVGGDFF 246
            +++D+G G G T            G++     V   +         +    +       
Sbjct: 18  HRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 77

Query: 247 ESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREI 306
                 D I  ++    F D +  K ++   + L   G+ L V+   PE P         
Sbjct: 78  FPDDSFDIITCRYAAHHFSDVR--KAVREVARVLKQDGRFLLVDHYAPEDPVLDE----- 130

Query: 307 SILDTICLFQVP-HGRERTKQEYSELAIKAGFKGVNYEY 344
             ++ +   + P H RE +  E+  +         + + 
Sbjct: 131 -FVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK 168

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 19/172 (11%)

Query: 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYD---LPYVIKNAPSYLGIEH 240
           ++ ++  F     L+++G   G   + +   +  I  +      + +        +   H
Sbjct: 11  MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIH 70

Query: 241 VGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENS 300
              +  +     D I++  VL   DD  +L L +     L +GG+L          P  +
Sbjct: 71  SRFEDAQLPRRYDNIVLTHVLEHIDDPVAL-LKRINDDWLAEGGRL------FLVCPNAN 123

Query: 301 ATSREISILDTICL---------FQVPHGRERTKQEYSELAIKAGFKGVNYE 343
           A SR+I++   I           F   H            A +AG +     
Sbjct: 124 AVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	100.0
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	100.0
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	100.0
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	100.0
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	100.0
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.85
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.83
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.82
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.8
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.8
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.78
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.78
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.77
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.74
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.73
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.71
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.7
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.68
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.66
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.66
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.66
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.63
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.62
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.58
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.58
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.58
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	99.57
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.56
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.56
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.54
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.54
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.53
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.51
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.49
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.49
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.46
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.44
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.42
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.4
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.39
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.35
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.31
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.29
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.29
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.29
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.28
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.28
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.28
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.27
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.26
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.23
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.19
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.18
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.07
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.03
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.01
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.98
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.97
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.93
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.93
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.92
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.84
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.67
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.46
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.41
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.39
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.38
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.29
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.25
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.25
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.25
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.24
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.17
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.16
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.11
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.08
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.07
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.07
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.06
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.03
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.02
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.02
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.94
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.93
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.87
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.82
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.82
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.8
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	97.8
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.79
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.77
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.75
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.73
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.52
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.51
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.48
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.4
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.3
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	97.15
d1r1ua_	94	Metal-sensing transcriptional repressor CzrA {Stap	97.13
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.08
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	96.89
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.86
d1r1ta_	98	SmtB repressor {Cyanobacteria (Synechococcus), pcc	96.85
d1u2wa1	108	Cadmium efflux system accessory protein CadC {Stap	96.74
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	96.62
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.59
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	96.36
d3ctaa1	85	Ta1064 (RFK), N-terminal domain {Thermoplasma acid	95.91
d1sfxa_	109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	95.73
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	95.68
d1s3ja_	143	Putative transcriptional regulator YusO {Bacillus	95.67
d2a61a1	139	Transcriptional regulator TM0710 {Thermotoga marit	95.65
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.61
d2p4wa1	194	Transcriptional regulatory protein PF1790 {Pyrococ	95.61
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	95.6
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	95.38
d1xd7a_	127	Hypothetical protein ywnA {Bacillus subtilis [TaxI	95.25
d3broa1	135	Transcriptional regulator OEOE1854 {Oenococcus oen	95.15
d2hr3a1	145	Probable transcriptional regulator PA3067 {Pseudom	95.13
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	95.12
d2hoea1	62	N-acetylglucosamine kinase {Thermotoga maritima [T	95.1
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.08
d1r7ja_	90	Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu	94.97
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	94.95
d1z6ra1	70	Mlc protein N-terminal domain {Escherichia coli [T	94.8
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	94.77
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	94.73
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.71
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.7
d1ylfa1	138	Hypothetical protein BC1842 {Bacillus cereus [TaxI	94.65
d2hzta1	95	Putative transcriptional regulator YtcD {Bacillus	94.62
d2etha1	140	Putative transcriptional regulator TM0816 {Thermot	94.59
d1lnwa_	141	MexR repressor {Pseudomonas aeruginosa [TaxId: 287	94.52
d1jgsa_	138	Multiple antibiotic resistance repressor, MarR {Es	94.45
d1ulya_	190	Hypothetical protein PH1932 {Pyrococcus horikoshii	94.38
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.37
d2bv6a1	136	Transcriptional regulator MgrA {Staphylococcus aur	94.19
d1dpua_	69	C-terminal domain of RPA32 {Human (Homo sapiens) [	94.07
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.07
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.92
d1ku9a_	151	DNA-binding protein Mj223 {Archaeon Methanococcus	93.69
d2f2ea1	142	Hypothetical protein PA1607 {Pseudomonas aeruginos	93.68
d1z7ua1	108	Hypothetical protein EF0647 {Enterococcus faecalis	93.65
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	93.65
d2fbia1	136	Probable transcriptional regulator PA4135 {Pseudom	93.63
d2fbha1	137	Transcriptional regulator PA3341 {Pseudomonas aeru	93.52
d1lj9a_	144	Transcriptional regulator SlyA {Enterococcus faeca	93.38
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.32
d1yyva1	114	Putative transcriptional regulator YtfH {Salmonell	93.3
d1z91a1	137	Organic hydroperoxide resistance transcriptional r	93.29
d2ev0a1	61	Manganese transport regulator MntR {Bacillus subti	93.29
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.03
d2fswa1	102	Hypothetical protein PG0823 {Porphyromonas gingiva	92.85
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.84
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.74
d2gxba1	59	Z-alpha domain of dsRNA-specific adenosine deamina	92.73
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.67
d3deua1	140	Transcriptional regulator SlyA {Salmonella typhimu	92.51
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	92.51
d1hsja1	115	Staphylococcal accessory regulator A homolog, SarR	92.43
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	92.34
d1q1ha_	88	Transcription factor E/IIe-alpha, N-terminal domai	92.27
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	92.09
d2cg4a1	63	Regulatory protein AsnC {Escherichia coli [TaxId:	92.02
d2isya1	63	Iron-dependent regulator IdeR {Mycobacterium tuber	91.85
d2frha1	115	Pleiotropic regulator of virulence genes, SarA {St	91.78
d1sfua_	70	34L {Yaba-like disease virus, YLDV [TaxId: 132475]	91.75
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	91.32
d1xmka1	73	Z-alpha domain of dsRNA-specific adenosine deamina	91.29
d2fxaa1	162	Protease production regulatory protein Hpr {Bacill	91.15
d2obpa1	81	Putative DNA-binding protein ReutB4095 {Ralstonia	91.05
d2fbka1	172	Transcriptional regulator DR1159 {Deinococcus radi	90.83
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.44
d1p4xa2	125	Staphylococcal accessory regulator A homolog, SarS	90.4
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	90.36
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.26
d3bwga1	78	Transcriptional regulator YydK {Bacillus subtilis	90.11
d1p4xa1	125	Staphylococcal accessory regulator A homolog, SarS	89.78
d2hs5a1	69	Putative transcriptional regulator RHA1_ro03477 {R	89.65
d1j75a_	57	Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}	89.41
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.0
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	88.77
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	88.51
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.34
d1hw1a1	74	Fatty acid responsive transcription factor FadR, N	88.31
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	87.76
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	87.74
d1jhfa1	71	LexA repressor, N-terminal DNA-binding domain {Esc	87.36
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.88
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.53
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	84.99
d1zyba1	73	Probable transcription regulator BT4300, C-termina	84.06
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	83.84
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	82.17
d1i5za1	69	Catabolite gene activator protein (CAP), C-termina	82.13
d1ft9a1	80	CO-sensing protein CooA, C-terminal domain {Rhodos	81.55
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	81.09
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	80.36
d1bl0a1	54	MarA {Escherichia coli [TaxId: 562]}	80.29
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	80.07

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=5.6e-45  Score=315.91  Aligned_cols=240  Identities=41%  Similarity=0.756  Sum_probs=208.5

Q ss_pred             ChHHHHHHhcCcchhhhhhhHHHHHhhCC-chhHHhhCCChhhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCCCC
Q 018405          116 SLRPYMALRLDKVPMDYWFRLKDQILEGG-TAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHV  194 (356)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (356)
                      |+++++.+++.|.++++|.+|.+++++++ ++|+..+|.++|+|+.++|+..+.|+++|...+....+.+++.++.+++.
T Consensus         3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~   82 (244)
T d1fp1d2           3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGI   82 (244)
T ss_dssp             CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTC
T ss_pred             cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence            78999998888999999999999999866 56999999999999999999999999999999998889999999867889


Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCChHHHHHHHH
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLK  274 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~  274 (356)
                      .+|||||||+|.++..+++++|+++++++|+|.+++.+...+|++++.+|+++++|.+|+|++.++||+|+|+++.++|+
T Consensus        83 ~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL~  162 (244)
T d1fp1d2          83 STLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLS  162 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHH
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999888999999999999888889999999999999999999999


Q ss_pred             HHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEc-cCceeEEE
Q 018405          275 NCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYG-ACNLYVME  353 (356)
Q Consensus       275 ~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~  353 (356)
                      +++++|+|||+++|+|.+.++.+...........+++.|+..+ +|+.||.+||.++|++|||+.+++++. .++.+|||
T Consensus       163 ~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~viE  241 (244)
T d1fp1d2         163 NCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME  241 (244)
T ss_dssp             HHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEE
T ss_pred             HHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEEE
Confidence            9999999999999999998876655444445667788887765 899999999999999999999999765 47899999


Q ss_pred             EeC
Q 018405          354 FLK  356 (356)
Q Consensus       354 ~~~  356 (356)
                      ++|
T Consensus       242 ~~K  244 (244)
T d1fp1d2         242 FYK  244 (244)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            998

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=1.5e-43  Score=307.97  Aligned_cols=241  Identities=51%  Similarity=0.954  Sum_probs=220.3

Q ss_pred             CChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCCCC
Q 018405          115 ASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHV  194 (356)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (356)
                      .++++++.+.+++.+++.|.+|.+++|+|+++|+..+|.++|+|+.++++..+.|+++|...+......+++.++.+++.
T Consensus         3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~   82 (243)
T d1kyza2           3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGL   82 (243)
T ss_dssp             CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSC
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCC
Confidence            47899998888888999999999999999999999999999999999999999999999998888888999988845667


Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCChHHHHHHHH
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLK  274 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~  274 (356)
                      .+|||||||+|.++..+++++|+++++++|+|.+++.+...+|++++.+|+++++|.+|++++.+++|+|+++++.++|+
T Consensus        83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~  162 (243)
T d1kyza2          83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLK  162 (243)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHH
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHHH
Confidence            89999999999999999999999999999999999999888999999999999999889999999999999999999999


Q ss_pred             HHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEE
Q 018405          275 NCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEF  354 (356)
Q Consensus       275 ~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~  354 (356)
                      +++++|+|||+++|+|.+.++.............+++.|+..+.+|+.||.+||+++|++|||+.+++++.....+|||+
T Consensus       163 ~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~viE~  242 (243)
T d1kyza2         163 NCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEF  242 (243)
T ss_dssp             HHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEEEEEE
T ss_pred             HHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCEEEEe
Confidence            99999999999999999987665444444445567888887655899999999999999999999999999999999997


Q ss_pred             e
Q 018405          355 L  355 (356)
Q Consensus       355 ~  355 (356)
                      +
T Consensus       243 ~  243 (243)
T d1kyza2         243 L  243 (243)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=2.9e-42  Score=299.04  Aligned_cols=239  Identities=28%  Similarity=0.517  Sum_probs=211.6

Q ss_pred             ChHHHHHHhcCcchhhhhhhHHHHHhhCC-chhHHhhCCChhhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCCCC
Q 018405          116 SLRPYMALRLDKVPMDYWFRLKDQILEGG-TAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHV  194 (356)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (356)
                      ++.+++.+..++.++..|..|++.++++. ++|+..+|.++|+|+.++|+..+.|+++|...+......+.+....+++.
T Consensus         2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~   81 (244)
T d1fp2a2           2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGL   81 (244)
T ss_dssp             CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTC
T ss_pred             ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCc
Confidence            46778888888899999999999999875 68999999999999999999999999999988776666655432226788


Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCChHHHHHHHH
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLK  274 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~  274 (356)
                      .+|||||||+|.++..+++++|+++++++|+|.+++.+...+||+++.+|+++++|.+|+|+++++||+|+|+++.++|+
T Consensus        82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~  161 (244)
T d1fp2a2          82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILK  161 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHH
T ss_pred             eEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHHH
Confidence            99999999999999999999999999999999999999888999999999999888889999999999999999999999


Q ss_pred             HHHHhCCCC---CEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEccCceeE
Q 018405          275 NCYKALPDG---GKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYV  351 (356)
Q Consensus       275 ~~~~~L~pg---G~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~v  351 (356)
                      +++++|+||   |+++|+|.+.++.............+++.|+. + +|+.||.+||.++|++|||+.+++++..+..+|
T Consensus       162 ~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~-~G~ert~~e~~~ll~~AGf~~~~i~~~~~~~sv  239 (244)
T d1fp2a2         162 KCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL  239 (244)
T ss_dssp             HHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEE
T ss_pred             HHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-C-CCcCCCHHHHHHHHHHcCCceEEEEECCCCeEE
Confidence            999999998   89999999988765554434444566776664 3 799999999999999999999999999999999


Q ss_pred             EEEeC
Q 018405          352 MEFLK  356 (356)
Q Consensus       352 i~~~~  356 (356)
                      ||++|
T Consensus       240 IE~~p  244 (244)
T d1fp2a2         240 IEIYP  244 (244)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99986

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=100.00  E-value=2.7e-39  Score=283.50  Aligned_cols=238  Identities=26%  Similarity=0.399  Sum_probs=202.3

Q ss_pred             CCChHHHHHHhcCcchh-hhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCC
Q 018405          114 GASLRPYMALRLDKVPM-DYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFE  192 (356)
Q Consensus       114 ~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (356)
                      |.++++|+.+....... .+|.+|.+++|+|+++|+..+|.++|+|+.++++..+.|+++|...+......+++.++ ++
T Consensus         2 p~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~   80 (256)
T d1qzza2           2 PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WS   80 (256)
T ss_dssp             TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CT
T ss_pred             cHHHHHHHhhcCchhhhHhhHHHHHHHHHhCCchhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-Cc
Confidence            34778888665333333 37999999999999999999999999999999999999999999888888889999988 99


Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC-------CCCceEEEccCCCCCCCC-cEEEecccccCC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS-------YLGIEHVGGDFFESVPEA-DTILMKWVLSSF  264 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~~~~~~-D~i~~~~vlh~~  264 (356)
                      +..+|||||||+|.++..+++++|+++++++|+|.+++.+++       .++++++.+|+++++|.. |+|++.++||+|
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~  160 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNW  160 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGS
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcccccccc
Confidence            999999999999999999999999999999999888776643       278999999999987766 999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405          265 DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       265 ~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  344 (356)
                      +++++.++|++++++|+|||+++|+|.+.++....  .......+++.|+..+ +|+.||.++|.+++++|||+++++.+
T Consensus       161 ~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~--~~~~~~~~d~~ml~~~-~g~~rt~~e~~~ll~~AGf~~~~~~~  237 (256)
T d1qzza2         161 SDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA--DRFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERT  237 (256)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEE
T ss_pred             CcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcc--cHHHHHHHHHHHHhhC-CCccCCHHHHHHHHHHCCCceeEEEE
Confidence            99999999999999999999999999876544322  2334556788888775 89999999999999999999999887


Q ss_pred             cc-----CceeEEEEe
Q 018405          345 GA-----CNLYVMEFL  355 (356)
Q Consensus       345 ~~-----~~~~vi~~~  355 (356)
                      ..     ..++|+|+.
T Consensus       238 ~~~~~~~~~~~v~E~~  253 (256)
T d1qzza2         238 SGSTTLPFDFSILEFT  253 (256)
T ss_dssp             ECCSSCSSCEEEEEEE
T ss_pred             eCCcCccCceEEEEEE
Confidence            54     356899985

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=100.00  E-value=3.4e-37  Score=270.13  Aligned_cols=221  Identities=24%  Similarity=0.409  Sum_probs=191.2

Q ss_pred             hhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHH
Q 018405          130 MDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLN  209 (356)
Q Consensus       130 ~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~  209 (356)
                      ..+|.+|++++|+|+++|+..+|.++|+|+..+++..+.|..+|...+......+++.++ +++..+|||||||+|.++.
T Consensus        18 ~~~~~~L~~~vr~G~~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~~   96 (253)
T d1tw3a2          18 DISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAA   96 (253)
T ss_dssp             GGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHH
T ss_pred             cccHHHHHHHHHhCCchhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHHH
Confidence            347899999999999999999999999999999999999999999888888889999998 9999999999999999999


Q ss_pred             HHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCCCCCCC-cEEEecccccCCChHHHHHHHHHHHHhCC
Q 018405          210 MIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFESVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALP  281 (356)
Q Consensus       210 ~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~~~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~  281 (356)
                      .+++++|+++++++|+|.+++.++++       ++++++.+|++++.|.. |+|++.++||||+++++.++|++++++|+
T Consensus        97 ~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lk  176 (253)
T d1tw3a2          97 AIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALE  176 (253)
T ss_dssp             HHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEE
T ss_pred             HHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHhcC
Confidence            99999999999999998877766542       68999999999876655 99999999999999999999999999999


Q ss_pred             CCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEccC-----ceeEEEEe
Q 018405          282 DGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGAC-----NLYVMEFL  355 (356)
Q Consensus       282 pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-----~~~vi~~~  355 (356)
                      |||+|+|.|.........   ......+++.|+..+ +|+.||.++|.+++++|||+++++...+.     ..++|++.
T Consensus       177 PGG~l~i~e~~~~~~~~~---~~~~~~~dl~~~~~~-~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~li~~~  251 (253)
T d1tw3a2         177 PGGRILIHERDDLHENSF---NEQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLA  251 (253)
T ss_dssp             EEEEEEEEECCBCGGGCC---SHHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEE
T ss_pred             CCcEEEEEeccCCCCCcc---hhHHHHhhHHHHhhC-CCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEEEEEe
Confidence            999999999876544322   223455677777665 88999999999999999999998876542     34566654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.85  E-value=1.3e-20  Score=161.10  Aligned_cols=163  Identities=17%  Similarity=0.161  Sum_probs=121.6

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHh--CCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCCcEEEecc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISK--YPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEADTILMKW  259 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~D~i~~~~  259 (356)
                      .++..+|||||||+|..+..+++.  .|+.+++++|. +.+++.|+++       .++++...|+.+ +.+..|+|++..
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~  116 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF  116 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence            457789999999999999999986  48999999996 9999888642       456777888877 544559999999


Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc---C------------CCccCC
Q 018405          260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV---P------------HGRERT  324 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~t  324 (356)
                      ++|+++.++..++|++++++|+|||.+++.|...+..+...   .........+....   .            .-..++
T Consensus       117 ~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  193 (225)
T d1im8a_         117 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN---HLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDS  193 (225)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHH---HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCC
T ss_pred             eccccChhhHHHHHHHHHHhCCCCceeecccccccccchhh---hHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCC
Confidence            99999988899999999999999999999998876542111   00000000000000   0            012358


Q ss_pred             HHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405          325 KQEYSELAIKAGFKGVNYEYGACNLYVMEFLK  356 (356)
Q Consensus       325 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~  356 (356)
                      .+++.++|+++||+.++++.-...+..+.+.|
T Consensus       194 ~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k  225 (225)
T d1im8a_         194 IETHKVRLKNVGFSQVELWFQCFNFGSMIAVK  225 (225)
T ss_dssp             HHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence            89999999999999998876555666666665

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.83  E-value=1.4e-20  Score=161.32  Aligned_cols=153  Identities=20%  Similarity=0.283  Sum_probs=116.7

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------CCCceEEEccCCC-CCCCC-
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------YLGIEHVGGDFFE-SVPEA-  252 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~~~~-  252 (356)
                      ..+++..+ +++..+|||||||+|.++..+++..+  +++++|+ +.+++.|++      .++++++++|+.+ +++.+ 
T Consensus         5 ~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~   81 (231)
T d1vl5a_           5 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER   81 (231)
T ss_dssp             HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred             HHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence            45677666 88999999999999999999998754  7889996 888877643      3789999999998 77654 


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhh-cCCCccCCHHHHHH
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQ-VPHGRERTKQEYSE  330 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~e~~~  330 (356)
                       |+|++.+++||++|  ..++|++++++|+|||++++.++..+...      ......+...... ......++.++|.+
T Consensus        82 fD~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (231)
T d1vl5a_          82 FHIVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPEND------AFDVFYNYVEKERDYSHHRAWKKSDWLK  153 (231)
T ss_dssp             EEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSH------HHHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred             cccccccccccccCC--HHHHHHHHHHhcCCCcEEEEEeCCCCCCH------HHHHHHHHHHhhcccCcccCCCHHHHHH
Confidence             99999999999976  68999999999999999999988765431      1111111111111 11345678999999


Q ss_pred             HHHHcCCcceeEEEc
Q 018405          331 LAIKAGFKGVNYEYG  345 (356)
Q Consensus       331 ll~~aGf~~~~~~~~  345 (356)
                      +++++||+++++...
T Consensus       154 ~l~~aGf~~~~~~~~  168 (231)
T d1vl5a_         154 MLEEAGFELEELHCF  168 (231)
T ss_dssp             HHHHHTCEEEEEEEE
T ss_pred             HHHHCCCEEEEEEEe
Confidence            999999998876543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.82  E-value=5.9e-20  Score=162.31  Aligned_cols=156  Identities=19%  Similarity=0.229  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-C
Q 018405          178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-S  248 (356)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~  248 (356)
                      ......+....+ +++..+|||||||+|.++..+++++ +.+++++|+ +.+++.++++       ++++++.+|+.+ +
T Consensus        53 ~~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~  130 (282)
T d2o57a1          53 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP  130 (282)
T ss_dssp             HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccccccc
Confidence            334445555445 8889999999999999999999875 678999996 8887777643       689999999998 7


Q ss_pred             CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHH
Q 018405          249 VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQ  326 (356)
Q Consensus       249 ~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  326 (356)
                      ++.+  |+|++..++||+++  ..++|++++++|+|||++++.++.........   ......+..    . .....+.+
T Consensus       131 ~~~~sfD~V~~~~~l~h~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~~~~~~----~-~~~~~s~~  200 (282)
T d2o57a1         131 CEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS---SIQPILDRI----K-LHDMGSLG  200 (282)
T ss_dssp             SCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---GGHHHHHHH----T-CSSCCCHH
T ss_pred             ccccccchhhccchhhhccC--HHHHHHHHHHhcCCCcEEEEEEeecCCCCchh---HHHHHHHHh----c-cCCCCCHH
Confidence            7755  99999999999976  68999999999999999999998776543211   111111111    1 22346889


Q ss_pred             HHHHHHHHcCCcceeEEEc
Q 018405          327 EYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       327 e~~~ll~~aGf~~~~~~~~  345 (356)
                      ++.++++++||+.+.+...
T Consensus       201 ~~~~~l~~~Gf~~i~~~d~  219 (282)
T d2o57a1         201 LYRSLAKECGLVTLRTFSR  219 (282)
T ss_dssp             HHHHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHHHcCCceEEEEEC
Confidence            9999999999998887654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.80  E-value=6.2e-20  Score=159.32  Aligned_cols=147  Identities=16%  Similarity=0.253  Sum_probs=115.9

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC--c
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA--D  253 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~--D  253 (356)
                      ..+++.++ ..+..+|||||||+|..+..++..+.+ +++++|. +.+++.|++.    +++++.++|+.+ +++..  |
T Consensus        83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD  160 (254)
T d1xtpa_          83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD  160 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred             HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence            45666666 667889999999999999998876654 7889995 8888877643    568899999987 55543  9


Q ss_pred             EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018405          254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAI  333 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~  333 (356)
                      +|++..++||+++++..++|++|+++|+|||+++|.|.......         ...+.     ..+...||.++|.++|+
T Consensus       161 ~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~---------~~~d~-----~d~~~~rs~~~~~~l~~  226 (254)
T d1xtpa_         161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDK-----EDSSLTRSDIHYKRLFN  226 (254)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEET-----TTTEEEBCHHHHHHHHH
T ss_pred             eEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCc---------ceecc-----cCCceeCCHHHHHHHHH
Confidence            99999999999999899999999999999999999987765421         01111     11334579999999999


Q ss_pred             HcCCcceeEEE
Q 018405          334 KAGFKGVNYEY  344 (356)
Q Consensus       334 ~aGf~~~~~~~  344 (356)
                      ++||++++...
T Consensus       227 ~aGf~ii~~~~  237 (254)
T d1xtpa_         227 ESGVRVVKEAF  237 (254)
T ss_dssp             HHTCCEEEEEE
T ss_pred             HcCCEEEEEEe
Confidence            99999987655

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=1.9e-19  Score=154.56  Aligned_cols=151  Identities=18%  Similarity=0.279  Sum_probs=116.9

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC--
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA--  252 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--  252 (356)
                      -+++..+ +++..||||||||+|.++..+++..  .+++++|. +.+++.|+++      +++.++++|+.+ +++++  
T Consensus         7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f   83 (234)
T d1xxla_           7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF   83 (234)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred             HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence            3556666 9999999999999999999999876  47899996 8888877543      679999999988 77765  


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhh-cCCCccCCHHHHHHH
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQ-VPHGRERTKQEYSEL  331 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~e~~~l  331 (356)
                      |+|++.+++||+++  ..++|++++++|+|||++++.+...++.+   .   ....++...... ....+.++..+|.++
T Consensus        84 D~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (234)
T d1xxla_          84 DIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDP---V---LDEFVNHLNRLRDPSHVRESSLSEWQAM  155 (234)
T ss_dssp             EEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred             ceeeeeceeecccC--HHHHHHHHHHeeCCCcEEEEEEcCCCCCH---H---HHHHHHHHHhhCCCcccccCCHHHHHHH
Confidence            99999999999976  78999999999999999999987765431   1   111111111111 113556789999999


Q ss_pred             HHHcCCcceeEEE
Q 018405          332 AIKAGFKGVNYEY  344 (356)
Q Consensus       332 l~~aGf~~~~~~~  344 (356)
                      ++++||.+..+..
T Consensus       156 ~~~~gf~~~~~~~  168 (234)
T d1xxla_         156 FSANQLAYQDIQK  168 (234)
T ss_dssp             HHHTTEEEEEEEE
T ss_pred             HHHCCCceeEEEE
Confidence            9999998776544

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.2e-19  Score=154.65  Aligned_cols=139  Identities=19%  Similarity=0.237  Sum_probs=112.1

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC--cEEEeccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA--DTILMKWV  260 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~v  260 (356)
                      ..+..+|||||||+|..+..+++..+. +++++|. +.+++.|+++      ++++++++|+.+ +++..  |+|++..+
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            456789999999999999998876653 7999996 8888877643      457999999988 55443  99999999


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcce
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV  340 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~  340 (356)
                      +||+++++..++|++++++|+|||.+++.+....+..          .++.     ......++.++|.++|+++||+++
T Consensus       137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~----------~~~~-----~~~~~~~~~~~~~~l~~~aGf~ii  201 (222)
T d2ex4a1         137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV----------ILDD-----VDSSVCRDLDVVRRIICSAGLSLL  201 (222)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE----------EEET-----TTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred             cccchhhhhhhHHHHHHHhcCCcceEEEEEccccccc----------cccc-----CCceeeCCHHHHHHHHHHcCCEEE
Confidence            9999998889999999999999999999988765421          1110     113345789999999999999998


Q ss_pred             eEEEc
Q 018405          341 NYEYG  345 (356)
Q Consensus       341 ~~~~~  345 (356)
                      +...-
T Consensus       202 ~~~~q  206 (222)
T d2ex4a1         202 AEERQ  206 (222)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            87653

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=3.3e-19  Score=154.15  Aligned_cols=154  Identities=13%  Similarity=0.070  Sum_probs=118.2

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~  251 (356)
                      .+..+.+.+. +.+..+|||||||+|..+..++++++ .+++++|+ +.+++.+++.       ++++++.+|+.+..++
T Consensus        21 ~~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~   98 (245)
T d1nkva_          21 KYATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN   98 (245)
T ss_dssp             HHHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred             HHHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcccc
Confidence            3456677776 88999999999999999999998775 79999996 8888776542       5799999999884444


Q ss_pred             C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018405          252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYS  329 (356)
Q Consensus       252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~  329 (356)
                      .  |+|++..++||+++  ..++|+++++.|||||++++.++.....+...   .......   .  .......+..++.
T Consensus        99 ~~fD~v~~~~~~~~~~d--~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~---~~~~~~~---~--~~~~~~~~~~~~~  168 (245)
T d1nkva_          99 EKCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATE---EIAQACG---V--SSTSDFLTLPGLV  168 (245)
T ss_dssp             SCEEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSH---HHHHTTT---C--SCGGGSCCHHHHH
T ss_pred             CceeEEEEEehhhccCC--HHHHHHHHHHHcCcCcEEEEEeccccCCCChH---HHHHHhc---c--CCCcccCCHHHHH
Confidence            3  99999999999976  68999999999999999999988765533211   1111110   0  1122346889999


Q ss_pred             HHHHHcCCcceeEEEc
Q 018405          330 ELAIKAGFKGVNYEYG  345 (356)
Q Consensus       330 ~ll~~aGf~~~~~~~~  345 (356)
                      ++++++||+++.....
T Consensus       169 ~~~~~aG~~~v~~~~~  184 (245)
T d1nkva_         169 GAFDDLGYDVVEMVLA  184 (245)
T ss_dssp             HHHHTTTBCCCEEEEC
T ss_pred             HHHHHcCCEEEEEEeC
Confidence            9999999998876544

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=1.4e-18  Score=146.32  Aligned_cols=137  Identities=22%  Similarity=0.205  Sum_probs=103.3

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChHH
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQ  268 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~  268 (356)
                      +..+|||||||+|.++..+.      +.+++|. +.+++.++++ +++++.+|+.+ +.++.  |+|++.++|||+++  
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d--  106 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD--  106 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC--
T ss_pred             CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-ccccccccccccccccccccccccccccccccc--
Confidence            45689999999999988774      3578896 8888888764 79999999988 66654  99999999999976  


Q ss_pred             HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405          269 SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       269 ~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  344 (356)
                      ..++|++++++|+|||++++.++..+..     ...... ..........+...+|.++|.++|+++||+++++..
T Consensus       107 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~  176 (208)
T d1vlma_         107 PERALKEAYRILKKGGYLIVGIVDRESF-----LGREYE-KNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ  176 (208)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEECSSSH-----HHHHHH-HTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             cccchhhhhhcCCCCceEEEEecCCcch-----hHHhhh-hccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence            7899999999999999999988654321     000000 010000011234567999999999999999888765

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=1.1e-17  Score=146.67  Aligned_cols=164  Identities=16%  Similarity=0.206  Sum_probs=121.8

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~  251 (356)
                      .+..+++.+. +++..+|||||||.|.++..+++.++ .+++++|+ +..++.++++       .++.+...|..+....
T Consensus        40 k~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~  117 (280)
T d2fk8a1          40 KVDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEP  117 (280)
T ss_dssp             HHHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCC
T ss_pred             HHHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccc
Confidence            3567888887 88999999999999999999888764 69999996 7666665432       4567777776543223


Q ss_pred             CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCC----Cc-hhhhhhhhhhhhhhhhcCCCccCCHH
Q 018405          252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPE----NS-ATSREISILDTICLFQVPHGRERTKQ  326 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~t~~  326 (356)
                      .|.|++..+++|++++....+|++++++|||||+++|.+.+......    .. .........++...-.+|++..++.+
T Consensus       118 fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~  197 (280)
T d2fk8a1         118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE  197 (280)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred             hhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchH
Confidence            49999999999999888899999999999999999998766543210    00 00011111233222235788899999


Q ss_pred             HHHHHHHHcCCcceeEEEc
Q 018405          327 EYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       327 e~~~ll~~aGf~~~~~~~~  345 (356)
                      ++.+.++++||++..+...
T Consensus       198 ~l~~~~e~aGf~v~~~~~~  216 (280)
T d2fk8a1         198 MMVEHGEKAGFTVPEPLSL  216 (280)
T ss_dssp             HHHHHHHHTTCBCCCCEEC
T ss_pred             hhhhhHHhhccccceeeec
Confidence            9999999999999887664

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.73  E-value=4.4e-17  Score=142.70  Aligned_cols=165  Identities=18%  Similarity=0.158  Sum_probs=123.5

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-------CCCceEEEccCCCCCCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-------YLGIEHVGGDFFESVPE  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~~~  251 (356)
                      ....+++++. +++..+|||||||.|.++..+++.+ +++++++++ +..++.+++       .+++++..+|+.+....
T Consensus        50 k~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~  127 (285)
T d1kpga_          50 KIDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP  127 (285)
T ss_dssp             HHHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCC
T ss_pred             HHHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccc
Confidence            3567778787 8899999999999999999999998 589999996 655554432       26899999998663223


Q ss_pred             CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCC-----CCchhhhhhhhhhhhhhhhcCCCccCCHH
Q 018405          252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVP-----ENSATSREISILDTICLFQVPHGRERTKQ  326 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  326 (356)
                      .|.|++..++.|+..+....++++++++|+|||++++...+.....     ..+.........++..--.+|+|..++..
T Consensus       128 fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~  207 (285)
T d1kpga_         128 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP  207 (285)
T ss_dssp             CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred             ccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChh
Confidence            4999999999999877778999999999999999999887643211     00000111112222222235788899999


Q ss_pred             HHHHHHHHcCCcceeEEEcc
Q 018405          327 EYSELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       327 e~~~ll~~aGf~~~~~~~~~  346 (356)
                      ++.++++++||++.++....
T Consensus       208 ~~~~~~e~agf~v~~~~~~~  227 (285)
T d1kpga_         208 MVQECASANGFTVTRVQSLQ  227 (285)
T ss_dssp             HHHHHHHTTTCEEEEEEECH
T ss_pred             hHHHHHHHhchhhcccccch
Confidence            99999999999999887653

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.71  E-value=2e-17  Score=145.59  Aligned_cols=162  Identities=15%  Similarity=0.158  Sum_probs=112.0

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-  252 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-  252 (356)
                      ..+++.+..+.++.+|||||||+|..+..+++.+|. .+++++|. +.+++.|++.     .+++++.+|+.+ ++++. 
T Consensus        16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~f   95 (281)
T d2gh1a1          16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY   95 (281)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred             HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCc
Confidence            445554443668899999999999999999998874 78999996 8888877643     368899999988 66655 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCC-------CCC-chhhhhhhhhhhhhhhhcCCCcc-C
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV-------PEN-SATSREISILDTICLFQVPHGRE-R  323 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~-~  323 (356)
                      |+|++.+++||+++  ...+|++++++|||||++++.|+.....       ... ........+...........+.. .
T Consensus        96 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (281)
T d2gh1a1          96 DIAICHAFLLHMTT--PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN  173 (281)
T ss_dssp             EEEEEESCGGGCSS--HHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTT
T ss_pred             eEEEEehhhhcCCC--HHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999976  6789999999999999999998642110       000 00000111111111100012222 2


Q ss_pred             CHHHHHHHHHHcCCcceeEEEc
Q 018405          324 TKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       324 t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                      ...++..+++++||+.+++.-.
T Consensus       174 i~~~l~~~l~eaGf~~i~~~~~  195 (281)
T d2gh1a1         174 IGMKIPIYLSELGVKNIECRVS  195 (281)
T ss_dssp             GGGTHHHHHHHTTCEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCeEEEEEEe
Confidence            2346788999999999876544

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.70  E-value=9.4e-17  Score=140.99  Aligned_cols=164  Identities=23%  Similarity=0.278  Sum_probs=121.6

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-------CCCceEEEccCCCCCCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-------YLGIEHVGGDFFESVPE  251 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~~~  251 (356)
                      ....+++.+. +++..+|||||||.|.++..++++++ ++++++++ +..++.++.       ..++.+...|+..+...
T Consensus        49 k~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~  126 (291)
T d1kpia_          49 KRKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP  126 (291)
T ss_dssp             HHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred             HHHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccc
Confidence            4567888887 99999999999999999999999886 68999996 655554432       25788888886543233


Q ss_pred             CcEEEecccccCCCh-------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCC------chhhhhhhhhhhhhhhhcC
Q 018405          252 ADTILMKWVLSSFDD-------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN------SATSREISILDTICLFQVP  318 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~-------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  318 (356)
                      .|.|++..++.|+++       +....++++++++|+|||++++...+.++....      .+. ......++...-.+|
T Consensus       127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~-~~~~~~~fi~kyiFp  205 (291)
T d1kpia_         127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPM-SLLRFIKFILTEIFP  205 (291)
T ss_dssp             CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCH-HHHHHHHHHHHHTCT
T ss_pred             cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCch-hhcccchHHHHHhcC
Confidence            499999999999976       346899999999999999999988776542100      000 011111222222347


Q ss_pred             CCccCCHHHHHHHHHHcCCcceeEEEcc
Q 018405          319 HGRERTKQEYSELAIKAGFKGVNYEYGA  346 (356)
Q Consensus       319 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~  346 (356)
                      +|..++..++..+++++||++..+....
T Consensus       206 gg~lps~~~~~~~~e~~gl~v~~~~~~~  233 (291)
T d1kpia_         206 GGRLPRISQVDYYSSNAGWKVERYHRIG  233 (291)
T ss_dssp             TCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             CCCCCCHHHHHhhhcccccccceeeecc
Confidence            8899999999999999999998887664

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.68  E-value=5.1e-17  Score=118.51  Aligned_cols=97  Identities=16%  Similarity=0.260  Sum_probs=82.7

Q ss_pred             hHHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcc
Q 018405            8 EEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNAL   87 (356)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l   87 (356)
                      .+..++...+++++.||+.+++|++|+++||||.|.+++  ||+|++|||++++++   +..+. .+.|+||+|++.|++
T Consensus         4 ~e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~--~p~t~~eLa~~~~~~---~~~~~-~L~RlLR~L~~~gi~   77 (101)
T d1fp2a1           4 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQVP---SSKIG-NVRRLMRYLAHNGFF   77 (101)
T ss_dssp             THHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTCC---GGGHH-HHHHHHHHHHHTTSE
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcC--CCCCHHHHHHHcCCC---Cccch-HHHHHHHHHHhCCce
Confidence            345678889999999999999999999999999998753  699999999999995   33356 799999999999999


Q ss_pred             cceeeCCCcceecchhchHhhhCC
Q 018405           88 HCSFVDGQRLYSLASVAKYFVRNN  111 (356)
Q Consensus        88 ~~~~~~~~~~y~~t~~~~~l~~~~  111 (356)
                      .+.. +++++|++|+.+++|++++
T Consensus        78 ~~~~-~~~~~Y~lt~~s~~Lv~~~  100 (101)
T d1fp2a1          78 EIIT-KEEESYALTVASELLVRGS  100 (101)
T ss_dssp             EEEE-SSSEEEEECHHHHTTSTTS
T ss_pred             eeec-CCCCeEecCHHHHHhhcCC
Confidence            8543 3358999999999888654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.66  E-value=2.1e-16  Score=134.41  Aligned_cols=143  Identities=20%  Similarity=0.232  Sum_probs=103.8

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCC-CCCCC-cEEEecccccCCC
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE-SVPEA-DTILMKWVLSSFD  265 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~  265 (356)
                      +.++.+|||||||+|.++..+++..  .+++++|. +.+++.++++  .++.++.+|+.+ +.++. |+|++.++|||++
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~   95 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID   95 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence            4467799999999999999998865  46899996 8888887653  579999999887 44444 9999999999996


Q ss_pred             hHHHHHHHHHHH-HhCCCCCEEEEEecccCCCCCCchhhhhhhh---------hhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018405          266 DEQSLKLLKNCY-KALPDGGKLLNVNVTIPEVPENSATSREISI---------LDTICLFQVPHGRERTKQEYSELAIKA  335 (356)
Q Consensus       266 ~~~~~~~L~~~~-~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~t~~e~~~ll~~a  335 (356)
                      +  ...+|++++ ++|+|||++++.-+.....     .......         +.-.-.. ......++.+++.++++++
T Consensus        96 d--~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~l~~~l~~~  167 (225)
T d2p7ia1          96 D--PVALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFA-HGHRCTYALDTLERDASRA  167 (225)
T ss_dssp             S--HHHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHH-TTCCCCCCHHHHHHHHHHT
T ss_pred             C--HHHHHHHHHHHhcCCCceEEEEeCCcccH-----HHHHHHHhhhhhhhhhcCccccc-eeeeeccCHHHHHHHHHHC
Confidence            6  689999998 7899999999965432110     0000000         0000000 1134457899999999999


Q ss_pred             CCcceeEE
Q 018405          336 GFKGVNYE  343 (356)
Q Consensus       336 Gf~~~~~~  343 (356)
                      ||++++..
T Consensus       168 Gf~i~~~~  175 (225)
T d2p7ia1         168 GLQVTYRS  175 (225)
T ss_dssp             TCEEEEEE
T ss_pred             CCEEEEEE
Confidence            99988754

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=6.1e-17  Score=137.59  Aligned_cols=107  Identities=20%  Similarity=0.323  Sum_probs=89.3

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC--
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA--  252 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~--  252 (356)
                      ..++..+  +++..+|||||||+|.++..+++.  +.+++++|. +.+++.|++.     ..+.++.+|+.+ +++..  
T Consensus        28 ~~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~f  103 (226)
T d1ve3a1          28 EPLLMKY--MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTF  103 (226)
T ss_dssp             HHHHHHS--CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCE
T ss_pred             HHHHHHh--cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCc
Confidence            3445443  356789999999999999999984  678999996 8888877643     568899999988 76654  


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      |+|++..++||+++++..++|++++++|+|||++++....
T Consensus       104 D~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            9999999999999888999999999999999999987653

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=1.3e-16  Score=137.96  Aligned_cols=106  Identities=24%  Similarity=0.370  Sum_probs=88.4

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-  252 (356)
                      +..+++.+. ..+..+|||||||+|.++..+++..  .+++++|+ +.+++.|++.     .+++++.+|+.+ +.++. 
T Consensus        30 ~~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~f  106 (251)
T d1wzna1          30 VEEIFKEDA-KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF  106 (251)
T ss_dssp             HHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHHhc-CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhccccccc
Confidence            345555565 6677899999999999999999854  57999996 8899888753     479999999988 66655 


Q ss_pred             cEEEec-ccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          253 DTILMK-WVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       253 D~i~~~-~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      |+|+|. ++++|++.++..++|+++++.|+|||++++-
T Consensus       107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence            999885 6888888788899999999999999999884

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.63  E-value=8.2e-16  Score=128.05  Aligned_cols=101  Identities=18%  Similarity=0.144  Sum_probs=85.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC-cEEEecccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA-DTILMKWVL  261 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~-D~i~~~~vl  261 (356)
                      +-++++|||||||+|..+..++++.  .+++++|+ +.+++.+++.      +++++...|+.+ +.++. |+|++..++
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~  105 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVM  105 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCG
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeee
Confidence            4456799999999999999999974  57899996 7777765432      678999999988 44444 999999999


Q ss_pred             cCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      ||+++++..++|++++++|+|||.+++.....
T Consensus       106 ~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  137 (198)
T d2i6ga1         106 MFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD  137 (198)
T ss_dssp             GGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             ecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            99998889999999999999999999987654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.62  E-value=1.1e-15  Score=129.52  Aligned_cols=137  Identities=15%  Similarity=0.072  Sum_probs=105.7

Q ss_pred             HhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC----CCCCceEEEccCCCC--CCC-C-cEEEe
Q 018405          187 SYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP----SYLGIEHVGGDFFES--VPE-A-DTILM  257 (356)
Q Consensus       187 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~~v~~~~~D~~~~--~~~-~-D~i~~  257 (356)
                      .++ +++..+|||+|||+|..+..+++..|+.+++++|+ |.+++.+.    .++++..+.+|...+  ... . |++++
T Consensus        69 ~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i  147 (230)
T d1g8sa_          69 VMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVI  147 (230)
T ss_dssp             CCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             hCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEe
Confidence            344 77889999999999999999999999999999996 77766553    457888888888773  222 2 88788


Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCC
Q 018405          258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGF  337 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf  337 (356)
                      .+.+|++  ++...+++++++.|||||++++.......+....                    .....+++.+.|+++||
T Consensus       148 ~~~~~~~--~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~--------------------~~~~~~e~~~~L~~aGF  205 (230)
T d1g8sa_         148 YEDVAQP--NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD--------------------PKEIFKEQKEILEAGGF  205 (230)
T ss_dssp             EECCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC--------------------HHHHHHHHHHHHHHHTE
T ss_pred             eccccch--HHHHHHHHHHHHhcccCceEEEEeeccccCCCCC--------------------HHHHHHHHHHHHHHcCC
Confidence            8888887  4478899999999999999999876543321110                    01124678899999999


Q ss_pred             cceeEEEcc
Q 018405          338 KGVNYEYGA  346 (356)
Q Consensus       338 ~~~~~~~~~  346 (356)
                      ++++.+...
T Consensus       206 ~ive~idL~  214 (230)
T d1g8sa_         206 KIVDEVDIE  214 (230)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEecCC
Confidence            999887764

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.58  E-value=5e-15  Score=107.88  Aligned_cols=99  Identities=52%  Similarity=0.817  Sum_probs=83.5

Q ss_pred             HhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           10 ETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      +.+..-..++++.+++.+++|++|++|||+|.|.++|.+++.|..||+.+++.+  ||..+. .+.|+||.|++.|++..
T Consensus         4 dee~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~--~p~~~~-~L~RilR~Las~~vf~~   80 (107)
T d1kyza1           4 DEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTT--NPDAPV-MLDRMLRLLACYIILTC   80 (107)
T ss_dssp             HHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCC--CTTHHH-HHHHHHHHHHHTTSEEE
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCC--CCcchH-HHHHHHHHHHhcCceEE
Confidence            445566778999999999999999999999999998766788999999999997  676677 89999999999999986


Q ss_pred             eeeCC-----CcceecchhchHhhhCC
Q 018405           90 SFVDG-----QRLYSLASVAKYFVRNN  111 (356)
Q Consensus        90 ~~~~~-----~~~y~~t~~~~~l~~~~  111 (356)
                      ..+..     +..|.+||.+++|++++
T Consensus        81 ~~~~~~dg~~~~~Y~LTpvsk~Lv~de  107 (107)
T d1kyza1          81 SVRTQQDGKVQRLYGLATVAKYLVKNE  107 (107)
T ss_dssp             EEEECTTSCEEEEEEECHHHHHHSCCT
T ss_pred             eeecCCCCCeeeEEecchhHHhhcCCC
Confidence            43221     13699999999998763

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.58  E-value=4.7e-15  Score=123.06  Aligned_cols=110  Identities=11%  Similarity=0.123  Sum_probs=90.4

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------------------CCceEEE
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------------------LGIEHVG  242 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~v~~~~  242 (356)
                      +.+...+. +.++.||||||||+|..+..|+++  +.+++++|+ +.+++.++++                  ..+.+..
T Consensus        10 ~~~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (201)
T d1pjza_          10 QQYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC   86 (201)
T ss_dssp             HHHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred             HHHHHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceec
Confidence            34455565 778899999999999999999986  679999996 8888877642                  3467888


Q ss_pred             ccCCCCCC---CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          243 GDFFESVP---EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       243 ~D~~~~~~---~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                      +|+.+..+   .. |+|++..++|++++++....+++++++|||||++++......
T Consensus        87 ~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~  142 (201)
T d1pjza_          87 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD  142 (201)
T ss_dssp             ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred             ccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence            88887332   12 999999999999998899999999999999999988765543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.58  E-value=5.7e-16  Score=133.52  Aligned_cols=94  Identities=18%  Similarity=0.208  Sum_probs=78.5

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEEEec-ccccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTILMK-WVLSS  263 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~-~vlh~  263 (356)
                      ++.+|||||||+|.++..+++..  .+++++|. +.+++.|+++     .+++++++|+.+ +.++. |+|+|. ++++|
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~  114 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeec
Confidence            45799999999999999999975  47899996 8888887653     479999999987 55555 999875 67777


Q ss_pred             C-ChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          264 F-DDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       264 ~-~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      + +.++..++|+++++.|+|||.+++
T Consensus       115 ~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         115 IIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            6 456788999999999999999886

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.57  E-value=2.6e-15  Score=106.23  Aligned_cols=79  Identities=18%  Similarity=0.275  Sum_probs=70.9

Q ss_pred             HHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcc
Q 018405           18 MELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRL   97 (356)
Q Consensus        18 ~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~   97 (356)
                      +..+.+++.+.+|++|+++||||.|..    ||+|++|||+++|++      +. .+.|+||+|++.|+++   +++++.
T Consensus         6 l~~l~~~~~~~aL~~av~L~ifd~l~~----gp~s~~eLA~~~g~~------~~-~l~rlLr~l~a~gl~~---e~~~~~   71 (85)
T d1tw3a1           6 LIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDTR------PE-ALLRLIRHLVAIGLLE---EDAPGE   71 (85)
T ss_dssp             HHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEE---EEETTE
T ss_pred             HHHHHchHHHHHHHHHHHcCcHHHhcc----CCCCHHHHHHHhCcC------hh-HHHHHHHHHHHCCCeE---ecCCCe
Confidence            444569999999999999999999986    699999999999997      88 9999999999999999   445689


Q ss_pred             eecchhchHhhhC
Q 018405           98 YSLASVAKYFVRN  110 (356)
Q Consensus        98 y~~t~~~~~l~~~  110 (356)
                      |++|+.|+.|.++
T Consensus        72 y~lt~~s~~L~~D   84 (85)
T d1tw3a1          72 FVPTEVGELLADD   84 (85)
T ss_dssp             EEECTTGGGGSTT
T ss_pred             EecCHHHHHhhcC
Confidence            9999999988765

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.56  E-value=2.9e-15  Score=107.18  Aligned_cols=86  Identities=14%  Similarity=0.212  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           12 NNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      ++++.+++.+.+++.+++|++|+++||||.|..    ||+|++|||+++|++      +. .+.|+||+|++.|+++++.
T Consensus         6 ~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~----gp~t~~eLA~~~g~~------~~-~l~rLlr~L~a~gll~~~~   74 (92)
T d1qzza1           6 QDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDTH------PQ-ALSRLVRHLTVVGVLEGGE   74 (92)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEECCC
T ss_pred             hhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC----CCCCHHHHHHHHCcC------ch-HHHHHHHHHHHCCCeeeec
Confidence            788999999999999999999999999999987    699999999999998      88 9999999999999999642


Q ss_pred             eCCCcceecchhchHhhh
Q 018405           92 VDGQRLYSLASVAKYFVR  109 (356)
Q Consensus        92 ~~~~~~y~~t~~~~~l~~  109 (356)
                       ++.+.|++|+.|..|.+
T Consensus        75 -d~~~~~~~t~~g~lL~d   91 (92)
T d1qzza1          75 -KQGRPLRPTRLGMLLAD   91 (92)
T ss_dssp             -C-CCCCEECTTGGGGST
T ss_pred             -CCCceecccHHHHhccC
Confidence             23467899999987764

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.1e-15  Score=129.04  Aligned_cols=155  Identities=17%  Similarity=0.099  Sum_probs=99.0

Q ss_pred             HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHH----hCCCC--eEEEccc-hHHHHhCCCC-------CCceEE--E
Q 018405          179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIIS----KYPRI--KGINYDL-PYVIKNAPSY-------LGIEHV--G  242 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~p~~--~~~~~D~-~~~~~~a~~~-------~~v~~~--~  242 (356)
                      ..++.++..+...++..+|||||||+|.++..+++    .+++.  +++++|. +.+++.++++       +++.+.  .
T Consensus        26 ~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~  105 (280)
T d1jqea_          26 KKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHK  105 (280)
T ss_dssp             HTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEEC
T ss_pred             HHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchh
Confidence            33445555554344556999999999998777655    45554  5789996 7777766432       333332  2


Q ss_pred             ccCC-------CCCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhh
Q 018405          243 GDFF-------ESVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTIC  313 (356)
Q Consensus       243 ~D~~-------~~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~  313 (356)
                      .++.       .+.+..  |+|++.+++||++|  ..++|++++++|+|||.++|.....+.     ........+ ...
T Consensus       106 ~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~i~~~~~~~-----~~~~l~~~~-~~~  177 (280)
T d1jqea_         106 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSS-----GWDKLWKKY-GSR  177 (280)
T ss_dssp             SCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTS-----HHHHHHHHH-GGG
T ss_pred             hhhhhhcchhcccCCCCceeEEEEccceecCCC--HHHHHHHHHhhCCCCCEEEEEEecCcc-----hHHHHHHHH-HHh
Confidence            2221       122333  99999999999966  689999999999999999997653221     111110000 111


Q ss_pred             hhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405          314 LFQVPHGRERTKQEYSELAIKAGFKGVN  341 (356)
Q Consensus       314 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~  341 (356)
                      +........++.++|.++|++.||+...
T Consensus       178 ~~~~~~~~~~~~~~~~~~L~~~G~~~~~  205 (280)
T d1jqea_         178 FPQDDLCQYITSDDLTQMLDNLGLKYEC  205 (280)
T ss_dssp             SCCCTTSCCCCHHHHHHHHHHHTCCEEE
T ss_pred             cCCCcccccCCHHHHHHHHHHCCCceEE
Confidence            1111124456889999999999998654

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.54  E-value=1.1e-14  Score=106.32  Aligned_cols=101  Identities=38%  Similarity=0.602  Sum_probs=83.4

Q ss_pred             HhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCC-CCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405           10 ETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAG-AGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~-~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      +.+..-..++++.+++.+++|++|++|||+|.|.++| +++++|++||+.++.++..||..+. .|.|+||.|++.|++.
T Consensus         3 ~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~-~L~RiLRlLas~~vf~   81 (110)
T d1fp1d1           3 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPN-RLDRMLRLLASYSVLT   81 (110)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHH-HHHHHHHHHHHTTSEE
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHH-HHHHHHHHHHHcCccc
Confidence            5677888999999999999999999999999999865 3456899999999986433565677 8999999999999998


Q ss_pred             ceeeCC-----CcceecchhchHhhhCC
Q 018405           89 CSFVDG-----QRLYSLASVAKYFVRNN  111 (356)
Q Consensus        89 ~~~~~~-----~~~y~~t~~~~~l~~~~  111 (356)
                      .....+     +..|.+||.+++|++++
T Consensus        82 ~~~~~~~~g~~e~~Y~Ltpvsk~Lv~de  109 (110)
T d1fp1d1          82 STTRTIEDGGAERVYGLSMVGKYLVPDE  109 (110)
T ss_dssp             EEEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred             cccccCCCCCeeeEEecchhhHhhcCCC
Confidence            543221     13699999999998765

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.54  E-value=1.2e-14  Score=125.53  Aligned_cols=105  Identities=16%  Similarity=0.144  Sum_probs=83.7

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC-C-
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP-E-  251 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~-  251 (356)
                      .+++.+  .++..+|||||||+|..+..+++... .+++++|. +.+++.|+.+       .++.+..+|+.. +.. + 
T Consensus        16 ~lI~~~--~~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~   92 (252)
T d1ri5a_          16 CLIRLY--TKRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGK   92 (252)
T ss_dssp             HHHHHH--CCTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSS
T ss_pred             HHHHHh--CCCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccc
Confidence            345555  35778999999999999999988643 47899996 8888887532       468899999976 432 3 


Q ss_pred             C-cEEEecccccCC--ChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          252 A-DTILMKWVLSSF--DDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       252 ~-D~i~~~~vlh~~--~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      . |+|++..++||+  +.++..++|+++++.|+|||++++..
T Consensus        93 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~  134 (252)
T d1ri5a_          93 EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  134 (252)
T ss_dssp             CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence            3 999999999996  44567899999999999999998853

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.53  E-value=7.7e-15  Score=125.97  Aligned_cols=97  Identities=18%  Similarity=0.193  Sum_probs=81.3

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEe-cccccCCC
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILM-KWVLSSFD  265 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~-~~vlh~~~  265 (356)
                      .++..+|||||||+|.++..+++.  +.+++++|. +.+++.|+++....++.+|+.+ +++.+  |+|++ ..++||++
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~  117 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE  117 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred             cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence            346789999999999999999885  568999996 8999988876555678899888 77654  99997 46899997


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          266 DEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       266 ~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      |  ..++|++++++|+|||.+++..+
T Consensus       118 d--~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         118 N--KDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             C--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             h--HHHHHHHHHhhcCcCcEEEEEEC
Confidence            6  57899999999999999998653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.6e-14  Score=119.99  Aligned_cols=131  Identities=9%  Similarity=-0.060  Sum_probs=100.7

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-----------------------CCCceEEEccCC
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-----------------------YLGIEHVGGDFF  246 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~v~~~~~D~~  246 (356)
                      ..+..||||+|||+|..+..|++.  +.+++++|. +.+++.+++                       ..++++.++|++
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            567889999999999999999984  678999996 777775432                       146899999998


Q ss_pred             C-C-CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCcc
Q 018405          247 E-S-VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRE  322 (356)
Q Consensus       247 ~-~-~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (356)
                      + + .+..  |+|+...++|+++.++....++++.++|+|||++++.....+.....                 . .-..
T Consensus       121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~-----------------g-pp~~  182 (229)
T d2bzga1         121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP-----------------G-PPFY  182 (229)
T ss_dssp             GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC-----------------C-SSCC
T ss_pred             hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC-----------------C-CCCC
Confidence            7 3 3333  99999999999999899999999999999999998877655432100                 0 0112


Q ss_pred             CCHHHHHHHHHHcCCcceeE
Q 018405          323 RTKQEYSELAIKAGFKGVNY  342 (356)
Q Consensus       323 ~t~~e~~~ll~~aGf~~~~~  342 (356)
                      .+.+++.+++.. +|.+..+
T Consensus       183 ~~~~el~~lf~~-~~~i~~l  201 (229)
T d2bzga1         183 VPHAEIERLFGK-ICNIRCL  201 (229)
T ss_dssp             CCHHHHHHHHTT-TEEEEEE
T ss_pred             CCHHHHHHHhcC-CCEEEEE
Confidence            478999999964 6765443

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=2.8e-14  Score=124.18  Aligned_cols=92  Identities=15%  Similarity=0.264  Sum_probs=80.6

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--cEEEecccccCCCh
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDD  266 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~  266 (356)
                      .+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++.++.+|+.+ +++++  |+|++.+++|+   
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~---  159 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK---  159 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence            4678999999999999999999999999999996 8888887653 789999999998 77765  99999988887   


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          267 EQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       267 ~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                            +++++++|||||++++..+.
T Consensus       160 ------~~e~~rvLkpgG~l~~~~p~  179 (268)
T d1p91a_         160 ------AEELARVVKPGGWVITATPG  179 (268)
T ss_dssp             ------HHHHHHHEEEEEEEEEEEEC
T ss_pred             ------HHHHHHHhCCCcEEEEEeeC
Confidence                  35689999999999998753

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.7e-15  Score=129.93  Aligned_cols=138  Identities=14%  Similarity=0.027  Sum_probs=94.5

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CC------------------------------
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LG------------------------------  237 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~------------------------------  237 (356)
                      .+..+|||||||+|.++..++... ..+++++|+ +.+++.++++   ..                              
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            456799999999999887666543 236999996 8888776532   00                              


Q ss_pred             --c-eEEEccCCC-----CCCCC--cEEEecccccCCCh--HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhh
Q 018405          238 --I-EHVGGDFFE-----SVPEA--DTILMKWVLSSFDD--EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSRE  305 (356)
Q Consensus       238 --v-~~~~~D~~~-----~~~~~--D~i~~~~vlh~~~~--~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~  305 (356)
                        + .....+...     +.+.+  |+|++.+++||++.  ++...+++++++.|||||++++.+.......        
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~--------  200 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSY--------  200 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE--------
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccc--------
Confidence              0 111112211     33333  99999999999753  4678999999999999999999887543210        


Q ss_pred             hhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405          306 ISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY  344 (356)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~  344 (356)
                       ......    . .....+.++|.++|++|||+++++..
T Consensus       201 -~~~~~~----~-~~~~~~~~~~~~~l~~aGf~v~~~~~  233 (257)
T d2a14a1         201 -MVGKRE----F-SCVALEKGEVEQAVLDAGFDIEQLLH  233 (257)
T ss_dssp             -EETTEE----E-ECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             -eecccc----c-cccCCCHHHHHHHHHHCCCEEEEEEE
Confidence             000000    0 12346899999999999999888743

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.46  E-value=9.5e-14  Score=115.89  Aligned_cols=102  Identities=12%  Similarity=-0.020  Sum_probs=80.9

Q ss_pred             hcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCceEEEccCCC-CCCCC---cEEEec
Q 018405          188 YKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIEHVGGDFFE-SVPEA---DTILMK  258 (356)
Q Consensus       188 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~---D~i~~~  258 (356)
                      ++ +++..+|||+|||+|..+..+++..|+.+++++|+ |.+++.+++    ++++.++.+|... +.+..   ++.++.
T Consensus        52 l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~  130 (209)
T d1nt2a_          52 LK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY  130 (209)
T ss_dssp             CC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred             CC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence            55 78899999999999999999999999989999996 888877644    4789999999887 33322   332333


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      +.++|+  .+...+++++++.|||||++++....
T Consensus       131 ~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~  162 (209)
T d1nt2a_         131 QDIAQK--NQIEILKANAEFFLKEKGEVVIMVKA  162 (209)
T ss_dssp             ECCCST--THHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ecccCh--hhHHHHHHHHHHHhccCCeEEEEEEc
Confidence            456665  34788999999999999999997643

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.44  E-value=7.2e-14  Score=119.82  Aligned_cols=139  Identities=19%  Similarity=0.236  Sum_probs=99.2

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEE
Q 018405          168 VFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHV  241 (356)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~  241 (356)
                      .|..+.+..++..+..+.+ .  ..+..+|||+|||+|.++..+++.  +.+++++|. +.+++.|+++     -++++.
T Consensus        98 aFGTG~H~TT~l~l~~l~~-~--~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~  172 (254)
T d2nxca1          98 AFGTGHHETTRLALKALAR-H--LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFL  172 (254)
T ss_dssp             ----CCSHHHHHHHHHHHH-H--CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEE
T ss_pred             ccCccccchhhHHHHHHHh-h--cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEE
Confidence            4555555555555555443 3  347789999999999999988774  468999996 8888877653     356788


Q ss_pred             EccCCCCCCC--CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC
Q 018405          242 GGDFFESVPE--ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH  319 (356)
Q Consensus       242 ~~D~~~~~~~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (356)
                      .+|..+..+.  .|+|+++...+     ...++++.++++|||||++++.+...                          
T Consensus       173 ~~d~~~~~~~~~fD~V~ani~~~-----~l~~l~~~~~~~LkpGG~lilSgil~--------------------------  221 (254)
T d2nxca1         173 EGSLEAALPFGPFDLLVANLYAE-----LHAALAPRYREALVPGGRALLTGILK--------------------------  221 (254)
T ss_dssp             ESCHHHHGGGCCEEEEEEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEG--------------------------
T ss_pred             eccccccccccccchhhhccccc-----cHHHHHHHHHHhcCCCcEEEEEecch--------------------------
Confidence            8887764433  39998864433     36788999999999999999854321                          


Q ss_pred             CccCCHHHHHHHHHHcCCcceeEEEc
Q 018405          320 GRERTKQEYSELAIKAGFKGVNYEYG  345 (356)
Q Consensus       320 ~~~~t~~e~~~ll~~aGf~~~~~~~~  345 (356)
                         ...+++.+.++++||++++....
T Consensus       222 ---~~~~~v~~~~~~~Gf~~~~~~~~  244 (254)
T d2nxca1         222 ---DRAPLVREAMAGAGFRPLEEAAE  244 (254)
T ss_dssp             ---GGHHHHHHHHHHTTCEEEEEEEE
T ss_pred             ---hhHHHHHHHHHHCCCEEEEEEEE
Confidence               12467888999999999887665

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.42  E-value=3.1e-13  Score=111.70  Aligned_cols=103  Identities=19%  Similarity=0.268  Sum_probs=81.6

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCCCCCC-
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFESVPEA-  252 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~~~~-  252 (356)
                      -+++.++ ..+..+|||||||+|.++..+++..++  ++++|. +.+++.++++        .++++..+|++++.++. 
T Consensus        43 lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~--v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~  119 (194)
T d1dusa_          43 ILVENVV-VDKDDDILDLGCGYGVIGIALADEVKS--TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK  119 (194)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSE--EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred             HHHHhCC-cCCCCeEEEEeecCChhHHHHHhhccc--cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence            4566666 677899999999999999999998774  666775 7777666531        46899999998855543 


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                       |+|++..++|+. .+...++++++.+.|+|||+++++
T Consensus       120 fD~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         120 YNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             EEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEE
Confidence             999998887765 344678999999999999999874

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.4e-13  Score=117.93  Aligned_cols=138  Identities=14%  Similarity=0.102  Sum_probs=94.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CC---------------------------
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LG---------------------------  237 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~---------------------------  237 (356)
                      ..++.+|||||||+|.+....+.... .+++++|. +.+++.+++.     ..                           
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            34678999999999987654444333 37999996 8887766431     00                           


Q ss_pred             ----ceEEEccCCCC-------CCC-C-cEEEecccccCCC--hHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchh
Q 018405          238 ----IEHVGGDFFES-------VPE-A-DTILMKWVLSSFD--DEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSAT  302 (356)
Q Consensus       238 ----v~~~~~D~~~~-------~~~-~-D~i~~~~vlh~~~--~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~  302 (356)
                          ......|+..+       .+. . |+|++.++||+.+  .++..++|++++++|||||.|++.+.......     
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~-----  205 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWY-----  205 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEE-----
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccc-----
Confidence                12334566542       112 2 9999999999975  24678999999999999999999887643210     


Q ss_pred             hhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405          303 SREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE  343 (356)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~  343 (356)
                           .......    .....+.+++.++|+++||++++..
T Consensus       206 -----~~~~~~~----~~~~~t~e~v~~~l~~aGf~v~~~~  237 (263)
T d2g72a1         206 -----LAGEARL----TVVPVSEEEVREALVRSGYKVRDLR  237 (263)
T ss_dssp             -----EETTEEE----ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             -----ccCCccc----ccCCCCHHHHHHHHHHCCCeEEEEE
Confidence                 0010000    1223689999999999999988654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.8e-14  Score=117.90  Aligned_cols=134  Identities=16%  Similarity=0.120  Sum_probs=91.1

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC---CCCCC--cEEE----
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE---SVPEA--DTIL----  256 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~---~~~~~--D~i~----  256 (356)
                      ....+|||||||+|..+..+++..+ .+++++|+ +.+++.|+++     .++.++.+|...   +.+.+  |.|+    
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence            4568999999999999999998655 47899996 8888877643     456677766543   34443  6665    


Q ss_pred             -ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018405          257 -MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKA  335 (356)
Q Consensus       257 -~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a  335 (356)
                       +...++|+  .+...++++++++|||||++++.+......       .....        .........+.+...+.++
T Consensus       131 ~~~~~~~~~--~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~-------~~~~~--------~~~~~~~~~~~~~~~l~~a  193 (229)
T d1zx0a1         131 PLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSK--------YSDITIMFEETQVPALLEA  193 (229)
T ss_dssp             CCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTT--------CSCHHHHHHHHTHHHHHHT
T ss_pred             ccccccccc--cCHHHHHHHHHHHcCCCcEEEEEecCCcch-------hhhhh--------hhhcchhhhhHHHHHHHHC
Confidence             57788887  447899999999999999998754322110       00000        0011112345677788899


Q ss_pred             CCcceeEE
Q 018405          336 GFKGVNYE  343 (356)
Q Consensus       336 Gf~~~~~~  343 (356)
                      ||+...+.
T Consensus       194 gF~~~~i~  201 (229)
T d1zx0a1         194 GFRRENIR  201 (229)
T ss_dssp             TCCGGGEE
T ss_pred             CCeeEEEE
Confidence            99877654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-12  Score=116.79  Aligned_cols=112  Identities=16%  Similarity=0.224  Sum_probs=90.6

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC---------------CCCceEEEcc
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS---------------YLGIEHVGGD  244 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~D  244 (356)
                      ...+++.+. +++..+|||||||+|..+..+++.++..+++|+|+ +.+++.|+.               ..+++++.+|
T Consensus       140 ~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd  218 (328)
T d1nw3a_         140 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  218 (328)
T ss_dssp             HHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred             HHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence            456777777 88899999999999999999999999889999996 777666532               2579999999


Q ss_pred             CCC-CCCC----CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCC
Q 018405          245 FFE-SVPE----ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV  296 (356)
Q Consensus       245 ~~~-~~~~----~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~  296 (356)
                      +.+ ++.+    +|+|++.+.+ |+  ++..+.|+++.+.|||||++++.+.+.+..
T Consensus       219 ~~~~~~~~~~~~advi~~~~~~-f~--~~~~~~l~e~~r~LKpGg~iv~~~~~~~~~  272 (328)
T d1nw3a_         219 FLSEEWRERIANTSVIFVNNFA-FG--PEVDHQLKERFANMKEGGRIVSSKPFAPLN  272 (328)
T ss_dssp             TTSHHHHHHHHHCSEEEECCTT-TC--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             ccccccccccCcceEEEEccee-cc--hHHHHHHHHHHHhCCCCcEEEEecccCCCC
Confidence            988 5432    4888876554 44  557899999999999999999988766543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.31  E-value=1.2e-12  Score=109.50  Aligned_cols=100  Identities=15%  Similarity=0.248  Sum_probs=81.8

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC-CCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES-VPE  251 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~-~~~  251 (356)
                      ...+++.+. +++..+|||||||+|..+..+++.. ++.+++++|. +.+++.++++      .++.++.+|..+. ...
T Consensus        64 ~a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~  142 (213)
T d1dl5a1          64 MALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF  142 (213)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             hHHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc
Confidence            456777777 8899999999999999999999865 6778999995 8888877653      6788999998873 333


Q ss_pred             C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      +  |+|++..+++++++        ++.+.|+|||+|++.
T Consensus       143 ~~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         143 SPYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVP  174 (213)
T ss_dssp             CCEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred             cchhhhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence            3  99999999999875        356789999999884

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.29  E-value=1e-12  Score=107.73  Aligned_cols=101  Identities=17%  Similarity=0.164  Sum_probs=80.8

Q ss_pred             HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC--C
Q 018405          183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP--E  251 (356)
Q Consensus       183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~--~  251 (356)
                      .++..+. ..+..+|||||||+|.++..+++..  .+++++|. +.+++.++++       ++++++.+|+.+ ..+  .
T Consensus        24 ~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~  100 (186)
T d1l3ia_          24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD  100 (186)
T ss_dssp             HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred             HHHHhcC-CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence            4455565 7889999999999999999998864  47899996 8888877653       689999999876 333  2


Q ss_pred             CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      .|+|++....++     ...+++.+.+.|+|||++++...
T Consensus       101 ~D~v~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_         101 IDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             EEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cCEEEEeCcccc-----chHHHHHHHHHhCcCCEEEEEee
Confidence            399999877665     36789999999999999988543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.29  E-value=6.1e-12  Score=105.78  Aligned_cols=141  Identities=16%  Similarity=0.061  Sum_probs=97.8

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCC----CCCCceEEEccCCCC--CC--CC--cEEEec
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAP----SYLGIEHVGGDFFES--VP--EA--DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~----~~~~v~~~~~D~~~~--~~--~~--D~i~~~  258 (356)
                      +++..+|||+|||+|.++..+++.. |+-+++++|. +.+++.++    .+.++..+.+|...+  .+  ..  |+|++ 
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~-  149 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE-  149 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence            7789999999999999999999975 7889999996 77776654    346788888887662  11  12  55544 


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK  338 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~  338 (356)
                       .+++.  ++...+++++++.|+|||+++++......+...                    .......+..++ .+.||+
T Consensus       150 -d~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~--------------------~~~~v~~~v~~l-~~~gf~  205 (227)
T d1g8aa_         150 -DVAQP--TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTK--------------------EPEQVFREVERE-LSEYFE  205 (227)
T ss_dssp             -CCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTS--------------------CHHHHHHHHHHH-HHTTSE
T ss_pred             -Ecccc--chHHHHHHHHHHhcccCCeEEEEEECCccCCCC--------------------CHHHHHHHHHHH-HHcCCE
Confidence             45554  457889999999999999999875432221100                    000011233344 467999


Q ss_pred             ceeEEEccC---ceeEEEEeC
Q 018405          339 GVNYEYGAC---NLYVMEFLK  356 (356)
Q Consensus       339 ~~~~~~~~~---~~~vi~~~~  356 (356)
                      +++.+...+   .+.++.++|
T Consensus       206 iie~i~L~p~~~~H~~vv~rK  226 (227)
T d1g8aa_         206 VIERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             EEEEEECTTTSSSEEEEEEEC
T ss_pred             EEEEEcCCCCCCceEEEEEEe
Confidence            998877643   477888876

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=1.9e-12  Score=110.99  Aligned_cols=106  Identities=17%  Similarity=0.234  Sum_probs=88.2

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCC---------CCceEEEccCCC-
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPSY---------LGIEHVGGDFFE-  247 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-  247 (356)
                      .+..++..++ .++..+|||+|||+|.++..|+.. .|+-+++.+|. ++.++.|+++         +++.++.+|+.+ 
T Consensus        84 D~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~  162 (264)
T d1i9ga_          84 DAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS  162 (264)
T ss_dssp             HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred             HHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence            3556777777 899999999999999999999987 68999999996 8888877642         689999999987 


Q ss_pred             CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          248 SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       248 ~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      ++++.  |.|++     |+++  ...++.+++++|||||++++..+..
T Consensus       163 ~~~~~~fDaV~l-----dlp~--P~~~l~~~~~~LkpGG~lv~~~P~i  203 (264)
T d1i9ga_         163 ELPDGSVDRAVL-----DMLA--PWEVLDAVSRLLVAGGVLMVYVATV  203 (264)
T ss_dssp             CCCTTCEEEEEE-----ESSC--GGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             cccCCCcceEEE-----ecCC--HHHHHHHHHhccCCCCEEEEEeCcc
Confidence            66665  99876     4655  4688999999999999999876554

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.28  E-value=4e-12  Score=105.23  Aligned_cols=96  Identities=17%  Similarity=0.201  Sum_probs=76.9

Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------CCCceEEEccCCC-C--CCCC--cEEEeccccc
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------YLGIEHVGGDFFE-S--VPEA--DTILMKWVLS  262 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~--~~~~--D~i~~~~vlh  262 (356)
                      ..|||||||+|.++..+++.+|+..++++|. +.++..+.+      .+++.++.+|+.. .  ++.+  |.|++.+...
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P  110 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP  110 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence            4799999999999999999999999999995 766665533      2689999999876 2  5544  9888877776


Q ss_pred             CCChHH------HHHHHHHHHHhCCCCCEEEEEe
Q 018405          263 SFDDEQ------SLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       263 ~~~~~~------~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +.....      ...+|+.++++|||||.|.|..
T Consensus       111 ~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         111 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            543322      1489999999999999999864

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.28  E-value=2.5e-12  Score=110.90  Aligned_cols=104  Identities=20%  Similarity=0.262  Sum_probs=84.0

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVP  250 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~  250 (356)
                      .+..++..++ +++..+|||+|||+|.++..+++.. |+.+++++|. +++++.|+++       +++.+...|+...++
T Consensus        91 d~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~  169 (266)
T d1o54a_          91 DSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD  169 (266)
T ss_dssp             HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS
T ss_pred             HHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc
Confidence            4556777777 9999999999999999999999875 7889999996 8888887653       567888888766544


Q ss_pred             CC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          251 EA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       251 ~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      ..  |.|+     +++++  ..++|+++.++|||||++++..+
T Consensus       170 ~~~~D~V~-----~d~p~--p~~~l~~~~~~LKpGG~lv~~~P  205 (266)
T d1o54a_         170 EKDVDALF-----LDVPD--PWNYIDKCWEALKGGGRFATVCP  205 (266)
T ss_dssp             CCSEEEEE-----ECCSC--GGGTHHHHHHHEEEEEEEEEEES
T ss_pred             ccceeeeE-----ecCCC--HHHHHHHHHhhcCCCCEEEEEeC
Confidence            33  6654     46765  57899999999999999998654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=2.1e-12  Score=113.63  Aligned_cols=97  Identities=16%  Similarity=0.187  Sum_probs=74.1

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCC-----CCCCC-c
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFE-----SVPEA-D  253 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~-----~~~~~-D  253 (356)
                      .++..+|||||||+|..+..|+++  +.+++++|. +.+++.|++.          .+..+...|+..     +..+. |
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd  131 (292)
T d1xvaa_          54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD  131 (292)
T ss_dssp             HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence            345689999999999999999985  578999996 8888877542          234455566543     22234 8


Q ss_pred             EEEe-cccccCCCh-----HHHHHHHHHHHHhCCCCCEEEEE
Q 018405          254 TILM-KWVLSSFDD-----EQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       254 ~i~~-~~vlh~~~~-----~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      +|+| .++++|+++     ++..++|++++++|+|||++++-
T Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence            8876 468888764     45789999999999999998883

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=2.9e-11  Score=104.20  Aligned_cols=127  Identities=20%  Similarity=0.236  Sum_probs=97.8

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCCC--cEEEeccc--
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPEA--DTILMKWV--  260 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~~--D~i~~~~v--  260 (356)
                      +...+|||+|||+|..+..++..+|+.+++++|. +..++.|+++      .+|+++.+|++++.+..  |+|+++--  
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi  186 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI  186 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence            4568899999999999999999999999999996 8888877653      57999999999966543  99998522  


Q ss_pred             -----------ccCCCh----------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC
Q 018405          261 -----------LSSFDD----------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH  319 (356)
Q Consensus       261 -----------lh~~~~----------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (356)
                                 +.+-|.          +...++++.+.+.|+|||.+++ |..                          .
T Consensus       187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig--------------------------~  239 (274)
T d2b3ta1         187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHG--------------------------W  239 (274)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECC--------------------------S
T ss_pred             hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EEC--------------------------c
Confidence                       211111          2356788999999999999888 210                          0


Q ss_pred             CccCCHHHHHHHHHHcCCcceeEEEccCc
Q 018405          320 GRERTKQEYSELAIKAGFKGVNYEYGACN  348 (356)
Q Consensus       320 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~  348 (356)
                         ...+.+.+++++.||+.+++.....+
T Consensus       240 ---~q~~~v~~~l~~~gf~~i~~~kDl~g  265 (274)
T d2b3ta1         240 ---QQGEAVRQAFILAGYHDVETCRDYGD  265 (274)
T ss_dssp             ---SCHHHHHHHHHHTTCTTCCEEECTTS
T ss_pred             ---hHHHHHHHHHHHCCCCeEEEEECCCC
Confidence               12467889999999998888776543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=9.2e-12  Score=112.92  Aligned_cols=113  Identities=14%  Similarity=0.211  Sum_probs=87.3

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---------------CCceE-EE
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---------------LGIEH-VG  242 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~v~~-~~  242 (356)
                      .+..+++.+. +++..+|||||||+|..+..+++.++..+++|+|+ +.+++.|+..               ..+.+ ..
T Consensus       204 ~i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         204 FLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            4567888887 88999999999999999999999999889999996 8887777532               22333 34


Q ss_pred             ccCCC-C-----CCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCC
Q 018405          243 GDFFE-S-----VPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV  296 (356)
Q Consensus       243 ~D~~~-~-----~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~  296 (356)
                      +++.. +     ++.+|+|++.+.+ +.  ++..+.|+++.+.|||||++++.+.+.+..
T Consensus       283 ~~f~~~~~~d~~~~~adVV~inn~~-f~--~~l~~~L~ei~r~LKPGGrIVs~~~~~~~~  339 (406)
T d1u2za_         283 KSFVDNNRVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSLRSLT  339 (406)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             echhhccccccccccceEEEEeccc-Cc--hHHHHHHHHHHHhcCCCcEEEEecccCCCc
Confidence            55554 2     2345888876544 44  568999999999999999999988766543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.23  E-value=4.5e-12  Score=107.92  Aligned_cols=103  Identities=11%  Similarity=0.095  Sum_probs=79.1

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE  251 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~  251 (356)
                      +..++..++ +++..+|||+|||+|.++..+++. .|+.+++++|. ++.++.|+++       .++++..+|+.+..++
T Consensus        74 ~~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~  152 (250)
T d1yb2a1          74 ASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD  152 (250)
T ss_dssp             -------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred             HHHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc
Confidence            345666666 889999999999999999999986 58889999996 7777776542       5799999999885554


Q ss_pred             C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      .  |.|++     ++++  ...+|++++++|||||++++..+
T Consensus       153 ~~fD~V~l-----d~p~--p~~~l~~~~~~LKpGG~lv~~~P  187 (250)
T d1yb2a1         153 QMYDAVIA-----DIPD--PWNHVQKIASMMKPGSVATFYLP  187 (250)
T ss_dssp             CCEEEEEE-----CCSC--GGGSHHHHHHTEEEEEEEEEEES
T ss_pred             ceeeeeee-----cCCc--hHHHHHHHHHhcCCCceEEEEeC
Confidence            3  99876     3544  45789999999999999998654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.19  E-value=4e-11  Score=99.08  Aligned_cols=96  Identities=20%  Similarity=0.268  Sum_probs=74.0

Q ss_pred             CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------CCCceEEEccCCC---CCCCC--cEEEecccc
Q 018405          194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------YLGIEHVGGDFFE---SVPEA--DTILMKWVL  261 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~~~~--D~i~~~~vl  261 (356)
                      ...|||||||+|.++..+++.+|+..++++|. +.++..+.+      .+++.+..+|+..   .++..  |.|++.+.-
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd  111 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD  111 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence            35799999999999999999999999999995 666665533      2689999999866   24543  887765543


Q ss_pred             cCCChHH-------HHHHHHHHHHhCCCCCEEEEEe
Q 018405          262 SSFDDEQ-------SLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       262 h~~~~~~-------~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      . |+...       ...+|+.+.+.|+|||.|.+..
T Consensus       112 P-w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         112 P-WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             C-CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             c-ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            2 33221       1589999999999999998854

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.7e-11  Score=103.07  Aligned_cols=101  Identities=22%  Similarity=0.141  Sum_probs=79.9

Q ss_pred             HHHHHHHhc-CCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCC-----------CCceEEEccCC
Q 018405          181 MEKVLESYK-GFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPSY-----------LGIEHVGGDFF  246 (356)
Q Consensus       181 ~~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~  246 (356)
                      ...+++.+. ++++..+|||||||+|..+..+++. .|..+++++|. +++++.++++           .++.++.+|..
T Consensus        63 ~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~  142 (224)
T d1i1na_          63 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR  142 (224)
T ss_dssp             HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred             HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence            455666652 2678899999999999999888875 46789999996 8887776532           57889999988


Q ss_pred             C-CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          247 E-SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       247 ~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      . ..+.+  |+|++...+++.++        .+.+.|+|||++++.
T Consensus       143 ~~~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         143 MGYAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILP  180 (224)
T ss_dssp             GCCGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred             cccchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEE
Confidence            7 33333  99999999999875        367889999999984

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.07  E-value=1e-10  Score=97.78  Aligned_cols=98  Identities=18%  Similarity=0.245  Sum_probs=77.4

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCceEEEccCCCCCC-CC--
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIEHVGGDFFESVP-EA--  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~~~-~~--  252 (356)
                      ...+++.+. +++..+|||||||+|+++..+++..  .+++.+|. +..++.+++    ..++.++.+|....++ .+  
T Consensus        59 ~a~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pf  135 (224)
T d1vbfa_          59 GIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY  135 (224)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHHHhh-hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhH
Confidence            345677777 8899999999999999999888865  46778884 776666543    3789999999887444 33  


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      |+|++...+++.++        .+.+.|+|||+|++.
T Consensus       136 D~Iiv~~a~~~ip~--------~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         136 DRVVVWATAPTLLC--------KPYEQLKEGGIMILP  164 (224)
T ss_dssp             EEEEESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred             HHHHhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence            99999999998875        356789999999884

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.2e-10  Score=102.84  Aligned_cols=106  Identities=14%  Similarity=0.183  Sum_probs=82.8

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCC-----------------CCceE
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPSY-----------------LGIEH  240 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-----------------~~v~~  240 (356)
                      .+..++..++ +.++.+|||+|||+|.++..|++. .|+-+++.+|. ++.++.|+++                 +++.+
T Consensus        86 D~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~  164 (324)
T d2b25a1          86 DINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF  164 (324)
T ss_dssp             HHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred             cHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence            4567788787 999999999999999999999986 58889999996 7777766431                 57999


Q ss_pred             EEccCCCC---CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          241 VGGDFFES---VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       241 ~~~D~~~~---~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      ..+|+...   .+..  |.|++     ++++  ...+|.+++++|||||++++.-+..
T Consensus       165 ~~~di~~~~~~~~~~~fD~V~L-----D~p~--P~~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         165 IHKDISGATEDIKSLTFDAVAL-----DMLN--PHVTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             EESCTTCCC-------EEEEEE-----CSSS--TTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             EecchhhcccccCCCCcceEee-----cCcC--HHHHHHHHHHhccCCCEEEEEeCCH
Confidence            99998762   2332  88876     4544  3468999999999999999976544

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=2.2e-10  Score=102.08  Aligned_cols=95  Identities=22%  Similarity=0.234  Sum_probs=72.8

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC-------CCCceEEEccCCC-CCCCC--cEEEeccccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS-------YLGIEHVGGDFFE-SVPEA--DTILMKWVLS  262 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh  262 (356)
                      ++.+|||||||+|.++..++++.. .+++++|...+++.+++       .+++.++.+|+.+ +.|..  |+|++..+.+
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~  116 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence            568999999999999987777543 47889987555444432       2679999999988 66643  9999977777


Q ss_pred             CCChH-HHHHHHHHHHHhCCCCCEEEE
Q 018405          263 SFDDE-QSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       263 ~~~~~-~~~~~L~~~~~~L~pgG~lii  288 (356)
                      +...+ ....++..+.++|||||+++-
T Consensus       117 ~~~~e~~~~~~~~a~~r~LkpgG~iiP  143 (328)
T d1g6q1_         117 FLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeccchhHHHHHHHHHhccCCCeEEEe
Confidence            65443 467889999999999998863

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.98  E-value=4.4e-10  Score=92.13  Aligned_cols=98  Identities=18%  Similarity=0.174  Sum_probs=72.4

Q ss_pred             CCCceEEEEcCCccHHH----HHHHHh----CCCCeEEEccc-hHHHHhCCCC---------------------------
Q 018405          192 EHVKKLVDVGGGLGATL----NMIISK----YPRIKGINYDL-PYVIKNAPSY---------------------------  235 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~----~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---------------------------  235 (356)
                      .+..||+++|||+|.-.    ..+.+.    .+++++++.|+ +..++.|+..                           
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            46689999999999743    333332    13457888896 7777766421                           


Q ss_pred             ----------CCceEEEccCCCC-C-CC-C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          236 ----------LGIEHVGGDFFES-V-PE-A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       236 ----------~~v~~~~~D~~~~-~-~~-~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                                ..+.+...+...+ . +. . |+|+|.+||++++++...++|++++++|+|||.|++-
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                      1245566666652 2 22 3 9999999999999999999999999999999998884

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=2.2e-10  Score=101.50  Aligned_cols=95  Identities=21%  Similarity=0.193  Sum_probs=72.4

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCC-------CCCCceEEEccCCC-CCCCC--cEEEeccccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAP-------SYLGIEHVGGDFFE-SVPEA--DTILMKWVLS  262 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-------~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh  262 (356)
                      ++.+|||||||+|.++..+++..+ .+++++|.+.....+.       -.++|.++.+|+.+ +.+..  |+|++..+.|
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~  111 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY  111 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence            568999999999999998887544 3788999633322221       12679999999988 66543  9999877777


Q ss_pred             CCChH-HHHHHHHHHHHhCCCCCEEEE
Q 018405          263 SFDDE-QSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       263 ~~~~~-~~~~~L~~~~~~L~pgG~lii  288 (356)
                      +...+ ....++..+.+.|+|||+++-
T Consensus       112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         112 CLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            65544 478899999999999999874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.93  E-value=5.2e-10  Score=92.82  Aligned_cols=99  Identities=20%  Similarity=0.254  Sum_probs=77.9

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC-CC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP-EA  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~  252 (356)
                      ...+++.+. +++..+|||||||+|+.+.-+++.. +.+++.+|. +..++.++++      .++.++.+|.....+ .+
T Consensus        67 ~a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~  144 (215)
T d1jg1a_          67 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA  144 (215)
T ss_dssp             HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHHhhc-cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccC
Confidence            456677777 8899999999999999999887754 355777774 7777766542      789999999988433 33


Q ss_pred             --cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          253 --DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       253 --D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                        |.|++...+.+.|+        .+.+.|+|||++++.
T Consensus       145 pfD~Iiv~~a~~~ip~--------~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         145 PYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIP  175 (215)
T ss_dssp             CEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred             cceeEEeecccccCCH--------HHHHhcCCCCEEEEE
Confidence              99999999998875        256679999999884

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.93  E-value=8.2e-10  Score=92.28  Aligned_cols=101  Identities=17%  Similarity=0.211  Sum_probs=78.1

Q ss_pred             HHHHHHHhc-CCCCCceEEEEcCCccHHHHHHHHhC------CCCeEEEccc-hHHHHhCCCC-----------CCceEE
Q 018405          181 MEKVLESYK-GFEHVKKLVDVGGGLGATLNMIISKY------PRIKGINYDL-PYVIKNAPSY-----------LGIEHV  241 (356)
Q Consensus       181 ~~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~------p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~  241 (356)
                      ...+++.+. ++++..+|||||||+|+.+..+++..      +..+++.+|. ++.++.++++           .++.+.
T Consensus        67 ~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~  146 (223)
T d1r18a_          67 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  146 (223)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence            456666662 37788999999999999988877642      4568999995 7777776542           579999


Q ss_pred             EccCCCCCC-CC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          242 GGDFFESVP-EA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       242 ~~D~~~~~~-~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      .+|..+..+ .+  |.|++...+.+.|+        .+.+.|+|||++++.
T Consensus       147 ~~d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         147 EGDGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVP  189 (223)
T ss_dssp             ESCGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred             ecccccccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEE
Confidence            999988333 33  99999999998875        367799999999884

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.2e-09  Score=96.54  Aligned_cols=97  Identities=23%  Similarity=0.192  Sum_probs=73.3

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCC-------CCCCceEEEccCCC-CCCC-C-cEEEeccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAP-------SYLGIEHVGGDFFE-SVPE-A-DTILMKWV  260 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-------~~~~v~~~~~D~~~-~~~~-~-D~i~~~~v  260 (356)
                      ..++.+|||||||+|.++..++++.+ .+++++|..+....+.       ..+++.++.+|+.+ +.+. . |+|++..+
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~  111 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  111 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence            44678999999999999998888655 4789999633222221       12679999999988 5554 3 99999888


Q ss_pred             ccCCChH-HHHHHHHHHHHhCCCCCEEEE
Q 018405          261 LSSFDDE-QSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       261 lh~~~~~-~~~~~L~~~~~~L~pgG~lii  288 (356)
                      .|+...+ ....++....+.|+|||+++-
T Consensus       112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         112 GYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             eeecccccccHHHHHHHHhcCCCCcEEec
Confidence            8876655 355777778899999998874

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.84  E-value=1.7e-09  Score=88.14  Aligned_cols=111  Identities=23%  Similarity=0.295  Sum_probs=86.9

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-C-----
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-S-----  248 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~-----  248 (356)
                      ..++++.+. ..+...+||++||+|.++..+++++|+.+++++|. +.+++.+++.     +++.++.+++.+ .     
T Consensus        12 l~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~   90 (192)
T d1m6ya2          12 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   90 (192)
T ss_dssp             HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence            456777776 77889999999999999999999999999999996 8888887642     689999998865 2     


Q ss_pred             CC-CC-cEEEecccc---------cCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          249 VP-EA-DTILMKWVL---------SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       249 ~~-~~-D~i~~~~vl---------h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                      .+ .. |.|++-..+         ..+  ......|..+.++|+|||+++++.....
T Consensus        91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~--~~~~~~L~~a~~~Lk~gG~l~ii~f~s~  145 (192)
T d1m6ya2          91 LGIEKVDGILMDLGVSTYQLKGENREL--ENLKEFLKKAEDLLNPGGRIVVISFHSL  145 (192)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHTSHTHH--HHHHHHHHHGGGGEEEEEEEEEEESSHH
T ss_pred             cCCCCcceeeeccchhHhhhhhhhccc--hhHHHHHHHHHHhcCCCCeeeeeccccH
Confidence            22 22 887764332         112  2356889999999999999999886543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.67  E-value=1.9e-08  Score=85.88  Aligned_cols=120  Identities=18%  Similarity=0.175  Sum_probs=87.8

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC--CcEEEeccc
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE--ADTILMKWV  260 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~v  260 (356)
                      .+++.+|||+|||+|.++..+++. +..+++++|+ |..++.++++       ++++++.+|..+-.++  +|.|++...
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p  183 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  183 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence            357899999999999999999886 4568999996 8877766542       5799999999883333  398887532


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcce
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV  340 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~  340 (356)
                            .....+|..+.+.|+|||.+.+.+....+.                       ......+.+.++.++.||++.
T Consensus       184 ------~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~-----------------------~~~~~~e~~~~~~~~~g~~v~  234 (260)
T d2frna1         184 ------VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE  234 (260)
T ss_dssp             ------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred             ------CchHHHHHHHHhhcCCCCEEEEEecccccc-----------------------chhhHHHHHHHHHHHcCCceE
Confidence                  124567888889999999987766543211                       011235677888899999774

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=6.2e-07  Score=75.84  Aligned_cols=72  Identities=11%  Similarity=0.000  Sum_probs=55.3

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC-------CCC--CcEE
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES-------VPE--ADTI  255 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~-------~~~--~D~i  255 (356)
                      +..++||||||+|..+..++.+.|+++++++|. +.+++.|+++       +++.+...+....       ..+  .|+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            457999999999999999999999999999996 8888887653       5777776554331       122  2999


Q ss_pred             EecccccCC
Q 018405          256 LMKWVLSSF  264 (356)
Q Consensus       256 ~~~~vlh~~  264 (356)
                      +|+--.+.-
T Consensus       141 vsNPPY~~~  149 (250)
T d2h00a1         141 MCNPPFFAN  149 (250)
T ss_dssp             EECCCCC--
T ss_pred             EecCccccc
Confidence            998777653

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=1.4e-07  Score=78.05  Aligned_cols=106  Identities=16%  Similarity=0.166  Sum_probs=73.7

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC---
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES---  248 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---  248 (356)
                      +..+++..    ++.+|||||||+|..+..+++.++ +.+++.+|. +...+.++..       ++|+++.||..+.   
T Consensus        48 L~~lv~~~----kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~  123 (214)
T d2cl5a1          48 MDAVIREY----SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQ  123 (214)
T ss_dssp             HHHHHHHH----CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGG
T ss_pred             HHHHHHhh----CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccc
Confidence            34455433    578999999999999999999875 579999996 7777766542       6799999998652   


Q ss_pred             ----CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          249 ----VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       249 ----~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                          .+..  |+|++-+   +.........+.++.+.|+|||.+++-+...
T Consensus       124 l~~~~~~~~~D~ifiD~---~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~  171 (214)
T d2cl5a1         124 LKKKYDVDTLDMVFLDH---WKDRYLPDTLLLEKCGLLRKGTVLLADNVIV  171 (214)
T ss_dssp             HHHHSCCCCEEEEEECS---CGGGHHHHHHHHHHTTCEEEEEEEEESCCCC
T ss_pred             hhhcccccccceeeecc---cccccccHHHHHHHhCccCCCcEEEEeCcCC
Confidence                1112  8888752   2221223345777788999999766544333

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1e-07  Score=79.01  Aligned_cols=98  Identities=17%  Similarity=0.175  Sum_probs=74.9

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCC-------CCCceEEEccCCCC--------CCCC-
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPS-------YLGIEHVGGDFFES--------VPEA-  252 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~--------~~~~-  252 (356)
                      ..++++|||||+|+|..+..+++..| +.+++.+|. +...+.|++       .++++++.||..+.        .+.. 
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  136 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence            34689999999999999999999887 678999985 666665543       27899999997651        1222 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      |+|+.-+     ..+.....+..+.+.|+|||.+++-+...
T Consensus       137 D~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~  172 (219)
T d2avda1         137 DVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLW  172 (219)
T ss_dssp             EEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             cEEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence            8888742     22346788899999999999998866554

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.38  E-value=1.3e-07  Score=73.97  Aligned_cols=93  Identities=8%  Similarity=-0.019  Sum_probs=66.2

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--CCCC--CcEEEeccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--SVPE--ADTILMKWV  260 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~~~--~D~i~~~~v  260 (356)
                      .+.+|||+|||+|.++.+.+.+... +++.+|. +.+++.+++.       ++++++.+|...  ..+.  .|+|++---
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP   92 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP   92 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence            5789999999999999988887664 8899996 7776655432       568999999866  2222  399988422


Q ss_pred             ccCCChHHHHHHHHHHH--HhCCCCCEEEEE
Q 018405          261 LSSFDDEQSLKLLKNCY--KALPDGGKLLNV  289 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~--~~L~pgG~lii~  289 (356)
                      ..   .......|..+.  +.|+|+|.+++-
T Consensus        93 y~---~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          93 YA---KETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             SH---HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             hc---cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence            11   234556666665  458999988763

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.29  E-value=2.2e-06  Score=71.51  Aligned_cols=93  Identities=8%  Similarity=0.197  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhC----CCCCCceEEEccCCC-CCCC
Q 018405          178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNA----PSYLGIEHVGGDFFE-SVPE  251 (356)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~-~~~~  251 (356)
                      ...+..+++... ..+..+|||||||+|.++..|++...  ++++++. +..++..    ...++++++.+|+.+ +++.
T Consensus         7 ~~i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~   83 (235)
T d1qama_           7 KHNIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK   83 (235)
T ss_dssp             HHHHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred             HHHHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccc
Confidence            344567777666 77899999999999999999999765  4555553 4444433    335789999999998 6665


Q ss_pred             C-cEEEecccccCCChHHHHHHHHHHH
Q 018405          252 A-DTILMKWVLSSFDDEQSLKLLKNCY  277 (356)
Q Consensus       252 ~-D~i~~~~vlh~~~~~~~~~~L~~~~  277 (356)
                      . ...+..+.=++.+.    .++.++.
T Consensus        84 ~~~~~vv~NLPYnIss----~il~~ll  106 (235)
T d1qama_          84 NQSYKIFGNIPYNIST----DIIRKIV  106 (235)
T ss_dssp             SCCCEEEEECCGGGHH----HHHHHHH
T ss_pred             cccceeeeeehhhhhH----HHHHHHH
Confidence            5 55566777776643    4555543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.25  E-value=5.6e-07  Score=72.91  Aligned_cols=67  Identities=21%  Similarity=0.165  Sum_probs=51.7

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCCCCCCCcEEEeccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFESVPEADTILMKWV  260 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~~~~D~i~~~~v  260 (356)
                      .+.+|||+|||+|.++..++...+ .+++++|. +.+++.++++ .+++++.+|+.+.....|+|+++--
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NPP  116 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPP  116 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCcc
Confidence            358999999999999887776544 37889996 8888877664 6799999998763333499998644

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.25  E-value=2.1e-07  Score=81.30  Aligned_cols=99  Identities=19%  Similarity=0.207  Sum_probs=74.3

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-----------CCCceEEEccCCC---CCCCC-cEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-----------YLGIEHVGGDFFE---SVPEA-DTI  255 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~---~~~~~-D~i  255 (356)
                      +.+.+||.||+|.|..+..+++..|..+++++|+ |.+++.+++           .+|++++.+|..+   ..+.. |+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            4678999999999999999998878888999996 888876643           2689999999876   22333 999


Q ss_pred             Eeccc--ccC-CChH--HHHHHHHHHHHhCCCCCEEEEEe
Q 018405          256 LMKWV--LSS-FDDE--QSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       256 ~~~~v--lh~-~~~~--~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      ++-..  ... -+..  -..++++.|++.|+|||.+++.-
T Consensus       156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            86331  111 0100  13689999999999999988754

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.25  E-value=5.3e-07  Score=79.37  Aligned_cols=107  Identities=18%  Similarity=0.161  Sum_probs=75.3

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC---C-
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES---V-  249 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~-  249 (356)
                      +.++..+  .++..+|||+|||+|.++..++.... .+++++|. +..++.++++       ++++++.+|+++.   . 
T Consensus       136 r~~~~~~--~~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~  212 (324)
T d2as0a2         136 RLALEKW--VQPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQ  212 (324)
T ss_dssp             HHHHGGG--CCTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred             HHHHHhh--cCCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHH
Confidence            3444433  35678999999999999999887644 38999996 8777777543       4688999998762   1 


Q ss_pred             --CC-CcEEEecccccCCChH-------HHHHHHHHHHHhCCCCCEEEEEec
Q 018405          250 --PE-ADTILMKWVLSSFDDE-------QSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       250 --~~-~D~i~~~~vlh~~~~~-------~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                        .. .|+|++.---..-...       .-.++++.+.++|+|||+|+.+..
T Consensus       213 ~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         213 KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             hccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence              12 2999983322111111       235688899999999999998764

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.24  E-value=7.4e-07  Score=75.90  Aligned_cols=65  Identities=22%  Similarity=0.272  Sum_probs=52.2

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCC----CCcEEEec
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVP----EADTILMK  258 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~----~~D~i~~~  258 (356)
                      +..+++|+|||+|..+..++ .+|+.+++++|. +..++.|+++       .++.+..+|++++.+    ..|+|+++
T Consensus       110 ~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             cccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence            45789999999999999887 469999999996 8887777643       567888999988543    23999886

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.17  E-value=1e-06  Score=74.04  Aligned_cols=90  Identities=8%  Similarity=0.199  Sum_probs=68.4

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC-c
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA-D  253 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~-D  253 (356)
                      +..+++.+. .++..+|||||||+|.++..|++...  +++++|. +.+++.++..    ++++++.+|+.+ +++.. +
T Consensus        18 i~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~   94 (245)
T d1yuba_          18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR   94 (245)
T ss_dssp             HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence            456777776 78889999999999999999999754  6777775 5556665543    679999999998 77755 6


Q ss_pred             EEEecccccCCChHHHHHHH
Q 018405          254 TILMKWVLSSFDDEQSLKLL  273 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L  273 (356)
                      ..+..+.=+|++.+-..+++
T Consensus        95 ~~vv~NLPY~Ist~il~~~l  114 (245)
T d1yuba_          95 YKIVGNIPYHLSTQIIKKVV  114 (245)
T ss_dssp             EEEEEECCSSSCHHHHHHHH
T ss_pred             eeEeeeeehhhhHHHHHHHh
Confidence            66777888888765444444

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.16  E-value=8.7e-07  Score=73.57  Aligned_cols=97  Identities=16%  Similarity=0.097  Sum_probs=74.7

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC---------CCC-
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV---------PEA-  252 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~---------~~~-  252 (356)
                      .++.+|||||+++|..+..+++..| +.+++.+|. +...+.|++.       ++|+++.+|..+..         ... 
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f  137 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  137 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence            3689999999999999999999987 578899985 7666666542       67999999986521         222 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      |+|++-.    +. +.....++.+.+.|+|||.+++-+...
T Consensus       138 D~iFiDa----~k-~~y~~~~e~~~~ll~~gGiii~DNvl~  173 (227)
T d1susa1         138 DFIFVDA----DK-DNYLNYHKRLIDLVKVGGVIGYDNTLW  173 (227)
T ss_dssp             SEEEECS----CS-TTHHHHHHHHHHHBCTTCCEEEETTTG
T ss_pred             eEEEecc----ch-hhhHHHHHHHHhhcCCCcEEEEccCCC
Confidence            9998842    22 346789999999999999998865544

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.11  E-value=6.6e-07  Score=77.16  Aligned_cols=99  Identities=23%  Similarity=0.285  Sum_probs=73.2

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC---CCCCC-cEEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE---SVPEA-DTIL  256 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~~~~-D~i~  256 (356)
                      +.+.+||-||+|.|..+..+++..|..+++.+|+ |.+++.+++          .+|++++.+|..+   ..+.. |+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            4678999999999999999998777778988986 888877754          2789999999876   22333 9998


Q ss_pred             ecccccCCChH---HHHHHHHHHHHhCCCCCEEEEEe
Q 018405          257 MKWVLSSFDDE---QSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       257 ~~~vlh~~~~~---~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +-..-......   -...+++.+++.|+|||.+++.-
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            74322110000   03689999999999999988853

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.08  E-value=7.6e-07  Score=78.07  Aligned_cols=97  Identities=13%  Similarity=0.071  Sum_probs=70.3

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC------CCC-CcEEEec
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES------VPE-ADTILMK  258 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~------~~~-~D~i~~~  258 (356)
                      +..+|||++||+|.++..++..  ..+++++|. +.+++.++++      ++++++.+|.++.      ..+ .|+|++.
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            5789999999999999998763  457899996 8887777643      5789999998651      112 3999974


Q ss_pred             ccccCCCh-------HHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          259 WVLSSFDD-------EQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       259 ~vlh~~~~-------~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      ---...+.       ..-.++++.+.++|+|||.|+....
T Consensus       223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            32111111       1235789999999999999888553

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.07  E-value=1.3e-06  Score=74.94  Aligned_cols=97  Identities=21%  Similarity=0.234  Sum_probs=71.3

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------------CCCceEEEccCCC--CCCCC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------------YLGIEHVGGDFFE--SVPEA  252 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~v~~~~~D~~~--~~~~~  252 (356)
                      .++.+||.||+|.|..+..+++ +|..+++.+|+ |.+++.+++                .+|++++.+|...  ...+.
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            4779999999999999999886 56568888886 888877642                3689999999875  22233


Q ss_pred             -cEEEecccccCCChHH---HHHHHHHHHHhCCCCCEEEEEe
Q 018405          253 -DTILMKWVLSSFDDEQ---SLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~---~~~~L~~~~~~L~pgG~lii~e  290 (356)
                       |+|++-..- ......   ...+++.|++.|+|||.+++.-
T Consensus       150 yDvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         150 FDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             EEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCEEEEeCCC-CCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence             999874332 221111   2578999999999999988753

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.07  E-value=3.9e-06  Score=72.47  Aligned_cols=99  Identities=15%  Similarity=0.099  Sum_probs=71.1

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCCC------CC-CcE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFESV------PE-ADT  254 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~------~~-~D~  254 (356)
                      ..++.+|||+.||+|.++..++..  +.+++.+|. +..++.|+++        .+++++.+|+++..      .. .|+
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~  207 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI  207 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence            446789999999999999988874  568999996 7777777642        36899999987621      12 399


Q ss_pred             EEec---cccc----CCC-hHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          255 ILMK---WVLS----SFD-DEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       255 i~~~---~vlh----~~~-~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      |++-   +.-.    .+. .+....+++.+.++|+|||.++++..
T Consensus       208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            9972   1110    111 13356678889999999998777654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.06  E-value=9.4e-07  Score=75.56  Aligned_cols=98  Identities=18%  Similarity=0.170  Sum_probs=73.6

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC--C-CCCC-cEEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE--S-VPEA-DTIL  256 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~-~~~~-D~i~  256 (356)
                      ..+.+||-||+|.|..+..+++..+..+++.+|+ |.+++.+++          .+|++++.+|...  . .++. |+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            4678999999999999999998777778888886 888777643          2789999999876  2 2233 9998


Q ss_pred             ecccccCCChH--HHHHHHHHHHHhCCCCCEEEEE
Q 018405          257 MKWVLSSFDDE--QSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       257 ~~~vlh~~~~~--~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      +-..-..-+..  -...+++.+++.|+|||.++..
T Consensus       154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q  188 (274)
T d1iy9a_         154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (274)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence            64321111101  1468899999999999998875

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.6e-06  Score=74.37  Aligned_cols=98  Identities=19%  Similarity=0.221  Sum_probs=73.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC---CCCCC-cEEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE---SVPEA-DTIL  256 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~~~~-D~i~  256 (356)
                      ..+.+||-||+|.|..+..+++..+..+++.+|+ |.+++.+++          .+|++++.+|...   ..++. |+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            4678999999999999999998777788999986 888887754          2799999999776   23333 9998


Q ss_pred             ecccccCCChH---HHHHHHHHHHHhCCCCCEEEEEe
Q 018405          257 MKWVLSSFDDE---QSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       257 ~~~vlh~~~~~---~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +-.. +.....   -...+++.|++.|+|||.+++.-
T Consensus       157 ~D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         157 TDSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             EECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EcCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            7432 211111   12477999999999999998853

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.02  E-value=1.8e-06  Score=74.41  Aligned_cols=98  Identities=17%  Similarity=0.224  Sum_probs=74.4

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC---CCCC-C-cEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE---SVPE-A-DTI  255 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~~~-~-D~i  255 (356)
                      +++.+||-||+|.|..+.++++..|-.+++.+|+ +.+++.+++          .+|++++.+|..+   ..++ . |+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            4678999999999999999998777678888886 888877754          3789999999765   2333 3 999


Q ss_pred             EecccccCCChH---HHHHHHHHHHHhCCCCCEEEEEe
Q 018405          256 LMKWVLSSFDDE---QSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       256 ~~~~vlh~~~~~---~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +.-.. ......   -...+++.+++.|+|||.+++.-
T Consensus       159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            87332 111111   13689999999999999999854

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.02  E-value=5.8e-06  Score=67.29  Aligned_cols=85  Identities=15%  Similarity=0.099  Sum_probs=56.7

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCCCcEEEecccccCCCh
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPEADTILMKWVLSSFDD  266 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~  266 (356)
                      .+.+|||+|||+|.++..++.+.+ .+++++|. +.+++.++++     .+.++..+|........|+|++.--......
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~~  124 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQRK  124 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSST
T ss_pred             CCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccccccc
Confidence            457999999999999998776543 58899996 7777766542     4578888887664334599998655433222


Q ss_pred             HHHHHHHHHHHH
Q 018405          267 EQSLKLLKNCYK  278 (356)
Q Consensus       267 ~~~~~~L~~~~~  278 (356)
                      ......+....+
T Consensus       125 ~~d~~~l~~~~~  136 (201)
T d1wy7a1         125 HADRPFLLKAFE  136 (201)
T ss_dssp             TTTHHHHHHHHH
T ss_pred             cccHHHHHHHHh
Confidence            122344544433

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.94  E-value=2.2e-06  Score=74.11  Aligned_cols=99  Identities=21%  Similarity=0.199  Sum_probs=70.9

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC---CCCCC-cEEE
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE---SVPEA-DTIL  256 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~~~~-D~i~  256 (356)
                      ..+.+||-||+|.|..+..+++..|-.+++.+|+ +.+++.+++          .+|++++.+|..+   ..+.. |+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            4678999999999999999998766678999996 888776654          2789999999876   22333 9998


Q ss_pred             ecccccCCChH--HHHHHHHHHHHhCCCCCEEEEEe
Q 018405          257 MKWVLSSFDDE--QSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       257 ~~~vlh~~~~~--~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      +-..--.-+..  -...+++.+++.|+|||.++..-
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            74321111111  14578999999999999999853

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=5.3e-06  Score=67.54  Aligned_cols=92  Identities=16%  Similarity=0.165  Sum_probs=71.0

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH---HHhCC---CCCCceEEEccCCCCCCC--CcEEEecccccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV---IKNAP---SYLGIEHVGGDFFESVPE--ADTILMKWVLSS  263 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~---~~~~v~~~~~D~~~~~~~--~D~i~~~~vlh~  263 (356)
                      +..+|+|||+|.|..+.-++-.+|+.+++.+|. ..-   ++.+.   ...+++++.....+..+.  .|+|++..+-  
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~--  142 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA--  142 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS--
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc--
Confidence            357999999999999999999999999999994 332   22221   126789998888873332  3999887763  


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          264 FDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       264 ~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                          ....+++-+...++++|++++.-
T Consensus       143 ----~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         143 ----SLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             ----SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ----CHHHHHHHHHHhcCCCcEEEEEC
Confidence                26789999999999999998854

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.87  E-value=6.3e-06  Score=71.91  Aligned_cols=99  Identities=14%  Similarity=0.050  Sum_probs=69.3

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCC------CCCC-cE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFES------VPEA-DT  254 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~------~~~~-D~  254 (356)
                      ..++.+|||+.||+|.++...+... ..+++.+|. +..++.++.+        .+++++.+|.++.      .... |+
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~  220 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  220 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence            3467899999999999998876632 236888896 6666655432        4689999998762      1222 99


Q ss_pred             EEec--------ccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          255 ILMK--------WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       255 i~~~--------~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      |++-        ..++.. ..+-.++++.+.++|+|||.|+++..
T Consensus       221 Ii~DPP~f~~~~~~~~~~-~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         221 IIIDPPSFARNKKEVFSV-SKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             EEECCCCC-----CCCCH-HHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEcChhhccchhHHHHH-HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            9973        111111 12356799999999999999998553

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=4e-06  Score=66.44  Aligned_cols=94  Identities=15%  Similarity=0.086  Sum_probs=57.5

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC----CCC-CcEEEe
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES----VPE-ADTILM  257 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~----~~~-~D~i~~  257 (356)
                      ..+..+|||+|||+|.++.+.+.+  +.+++.+|. +.+++.++++       .++.....|.+.+    ..+ .|+|++
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~  116 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence            346789999999999999988876  457888996 8887776543       2333333333211    112 399988


Q ss_pred             cccccCCCh-HHHHHHHHHHHHhCCCCCEEEEE
Q 018405          258 KWVLSSFDD-EQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       258 ~~vlh~~~~-~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                      .--.+ ... +....++.  ..+|+|||.+++.
T Consensus       117 DPPY~-~~~~~~l~~l~~--~~ll~~~g~ivie  146 (171)
T d1ws6a1         117 APPYA-MDLAALFGELLA--SGLVEAGGLYVLQ  146 (171)
T ss_dssp             CCCTT-SCTTHHHHHHHH--HTCEEEEEEEEEE
T ss_pred             ccccc-cCHHHHHHHHHH--cCCcCCCeEEEEE
Confidence            43222 221 22223332  3578999977763

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=6.7e-06  Score=65.87  Aligned_cols=93  Identities=11%  Similarity=0.011  Sum_probs=65.3

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC--CC-CCC-cEEEecccc
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE--SV-PEA-DTILMKWVL  261 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~-~~~-D~i~~~~vl  261 (356)
                      ...+|||++||+|.++.+.+.+... +++.+|. +.+++.++++      .+++++.+|.++  .. ... |+|++---.
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY  121 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  121 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             chhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence            3579999999999999998887654 7888885 7766655432      567888888776  22 223 999995442


Q ss_pred             cCCChHHHHHHHHHHHH--hCCCCCEEEEE
Q 018405          262 SSFDDEQSLKLLKNCYK--ALPDGGKLLNV  289 (356)
Q Consensus       262 h~~~~~~~~~~L~~~~~--~L~pgG~lii~  289 (356)
                      ..   ....+++..+.+  .|+|+|.+++-
T Consensus       122 ~~---~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         122 RR---GLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             ST---TTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             cc---chHHHHHHHHHHCCCCCCCeEEEEE
Confidence            22   234566666655  58998877773

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.80  E-value=1.3e-05  Score=70.31  Aligned_cols=101  Identities=15%  Similarity=0.197  Sum_probs=71.2

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-----CCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCC--CcEEEe
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-----PRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPE--ADTILM  257 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~--~D~i~~  257 (356)
                      ..+..+|+|.|||+|.++..+..+.     +...++++|. +.+++.|+..     ....+..+|.....+.  .|+|++
T Consensus       115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~  194 (328)
T d2f8la1         115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS  194 (328)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence            4567899999999999999887542     4557889996 7776666432     5677888887774333  399998


Q ss_pred             cccccCC-ChHH---------------HHHHHHHHHHhCCCCCEEEEEec
Q 018405          258 KWVLSSF-DDEQ---------------SLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       258 ~~vlh~~-~~~~---------------~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      .--.... .++.               -..++.++.+.|+|||+++++-+
T Consensus       195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p  244 (328)
T d2f8la1         195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  244 (328)
T ss_dssp             ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence            7554221 1111               22469999999999999887543

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.80  E-value=1.3e-05  Score=53.91  Aligned_cols=57  Identities=14%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      +.|++.+...+  +|.|+.|||+++|++      +. -+.|+|..|...|++++   +++++|++++..
T Consensus         8 l~IL~~~a~~~--~~~s~~eia~~~~~~------~s-t~~rll~tL~~~g~l~~---~~~g~y~lG~~l   64 (75)
T d1mkma1           8 FEILDFIVKNP--GDVSVSEIAEKFNMS------VS-NAYKYMVVLEEKGFVLR---KKDKRYVPGYKL   64 (75)
T ss_dssp             HHHHHHHHHCS--SCBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEE---CTTSCEEECTHH
T ss_pred             HHHHHHHHhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE---CCCCCEeecHHH
Confidence            45677777754  589999999999997      66 89999999999999995   445889988654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.79  E-value=3e-05  Score=63.76  Aligned_cols=106  Identities=16%  Similarity=0.122  Sum_probs=70.5

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC-cEEEe
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA-DTILM  257 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~-D~i~~  257 (356)
                      .-+++.+. ..+..+|||.|||+|.++..+.++.+. ..+.++|. +...+.+   .+..+..+|.+. +.... |+|++
T Consensus         9 ~~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---~~~~~~~~~~~~~~~~~~fd~ii~   84 (223)
T d2ih2a1           9 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG   84 (223)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred             HHHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---ccceeeeeehhccccccccceecc
Confidence            34455454 567789999999999999999887665 56888886 4433322   245677888776 33333 88887


Q ss_pred             cccccCCC---h------------------------HHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          258 KWVLSSFD---D------------------------EQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       258 ~~vlh~~~---~------------------------~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      .-......   .                        +-...++.++.+.|+|||+++++-+
T Consensus        85 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p  145 (223)
T d2ih2a1          85 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  145 (223)
T ss_dssp             CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence            54432110   0                        0124567889999999999888643

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.77  E-value=2.9e-05  Score=61.75  Aligned_cols=109  Identities=22%  Similarity=0.284  Sum_probs=79.0

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCC-C-----CC-
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE-S-----VP-  250 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~-----~~-  250 (356)
                      ..++++.+. ..+...++|..+|.|+++..+++.  +.+++++|. |.+++.++..  +++.++.+++.+ .     .. 
T Consensus         7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~   83 (182)
T d1wg8a2           7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV   83 (182)
T ss_dssp             HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCC
Confidence            456677676 678899999999999999999996  458999996 8887776543  688998888765 2     11 


Q ss_pred             CC-cEEEecc-----cccCCCh--HHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          251 EA-DTILMKW-----VLSSFDD--EQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       251 ~~-D~i~~~~-----vlh~~~~--~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      +. |.|++-.     -+.+..+  ......|....+.|+|||+++++...
T Consensus        84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh  133 (182)
T d1wg8a2          84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH  133 (182)
T ss_dssp             SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence            22 7776632     2222111  12456889999999999999997764

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.75  E-value=7.7e-05  Score=61.60  Aligned_cols=103  Identities=14%  Similarity=0.080  Sum_probs=67.8

Q ss_pred             HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh----CCCCeEEEccc-hHHHHhC-CCCCCceEEEccCCCC-----CC
Q 018405          182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISK----YPRIKGINYDL-PYVIKNA-PSYLGIEHVGGDFFES-----VP  250 (356)
Q Consensus       182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a-~~~~~v~~~~~D~~~~-----~~  250 (356)
                      ..++..+    ++.+|||||++.|..+..++..    .++.+++++|. +...... ...++++++.+|..++     ..
T Consensus        73 ~eli~~~----KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~  148 (232)
T d2bm8a1          73 HDMLWEL----RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLR  148 (232)
T ss_dssp             HHHHHHH----CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGS
T ss_pred             HHHHHHh----CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHH
Confidence            3455544    4789999999999877765543    36789999996 4332222 2237899999997652     11


Q ss_pred             C--CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          251 E--ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       251 ~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      +  .|+|+.=. -|..  +....-+ .....|+|||.+++-|..
T Consensus       149 ~~~~dlIfID~-~H~~--~~v~~~~-~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         149 EMAHPLIFIDN-AHAN--TFNIMKW-AVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             SSCSSEEEEES-SCSS--HHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred             hcCCCEEEEcC-Ccch--HHHHHHH-HHhcccCcCCEEEEEcCC
Confidence            2  28777643 3654  3344444 467899999999996653

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=9.1e-05  Score=58.74  Aligned_cols=105  Identities=19%  Similarity=0.302  Sum_probs=74.4

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccchHHHHhCCCCCCceEEEccCCC-C--------CC
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDLPYVIKNAPSYLGIEHVGGDFFE-S--------VP  250 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~--------~~  250 (356)
                      +.++.+++.-+++..+|||+||+.|.++..+.+.. +..+++++|+..    ....+++.++.+|+.+ .        ..
T Consensus        10 L~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~----~~~i~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T d1ej0a_          10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP----MDPIVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC----CCCCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             HHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc----ccccCCceEeecccccchhhhhhhhhcc
Confidence            45666777656788999999999999999988754 456789999632    2234688999999876 2        11


Q ss_pred             C--CcEEEecccccCCChHH---------HHHHHHHHHHhCCCCCEEEEE
Q 018405          251 E--ADTILMKWVLSSFDDEQ---------SLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       251 ~--~D~i~~~~vlh~~~~~~---------~~~~L~~~~~~L~pgG~lii~  289 (356)
                      .  .|+|++-.......+.+         +...|.-+.+.|+|||.+++=
T Consensus        86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K  135 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence            2  29988754433221111         346677788999999999983

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.52  E-value=0.00036  Score=57.26  Aligned_cols=107  Identities=18%  Similarity=0.053  Sum_probs=65.7

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhC----CCC--CCceEEEccCCCC-CCC-C
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNA----PSY--LGIEHVGGDFFES-VPE-A  252 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a----~~~--~~v~~~~~D~~~~-~~~-~  252 (356)
                      +..+.+.+- +.+..+|+|+|||.|..+..++...+...+.++++..-....    ...  +-+++...+-... .+. .
T Consensus        55 l~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~  133 (257)
T d2p41a1          55 LRWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC  133 (257)
T ss_dssp             HHHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred             HHHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence            455666664 778889999999999999999887665566655541111100    011  2245555543332 223 3


Q ss_pred             cEEEecccccCCC----hHHHHHHHHHHHHhCCCCCEEEE
Q 018405          253 DTILMKWVLSSFD----DEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       253 D~i~~~~vlh~~~----~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      |+|+|--.-+.-+    .+...++|.-+.+.|+|||.+++
T Consensus       134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv  173 (257)
T d2p41a1         134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV  173 (257)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence            9999864322111    11244788888899999998766

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.51  E-value=5.1e-05  Score=60.44  Aligned_cols=96  Identities=14%  Similarity=0.058  Sum_probs=66.7

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC------CCCC-cEE
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES------VPEA-DTI  255 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~------~~~~-D~i  255 (356)
                      .....+|||+.||+|.++.+.+.+... +++.+|. +.+++.++++       .+++++.+|.++.      .... |+|
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlI  117 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV  117 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hcCCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceE
Confidence            336789999999999999998887544 6788885 6666665432       4789999998651      1122 999


Q ss_pred             EecccccCCChHHHHHHHHHHHH--hCCCCCEEEEEec
Q 018405          256 LMKWVLSSFDDEQSLKLLKNCYK--ALPDGGKLLNVNV  291 (356)
Q Consensus       256 ~~~~vlh~~~~~~~~~~L~~~~~--~L~pgG~lii~e~  291 (356)
                      ++---.+   .+....+|..+.+  .|+|+|.+++ |.
T Consensus       118 flDPPY~---~~~~~~~l~~i~~~~~L~~~giIi~-E~  151 (182)
T d2fhpa1         118 LLDPPYA---KQEIVSQLEKMLERQLLTNEAVIVC-ET  151 (182)
T ss_dssp             EECCCGG---GCCHHHHHHHHHHTTCEEEEEEEEE-EE
T ss_pred             Eechhhh---hhHHHHHHHHHHHCCCCCCCEEEEE-Ec
Confidence            8843321   1235677777754  5899997664 54

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00063  Score=57.49  Aligned_cols=94  Identities=14%  Similarity=0.268  Sum_probs=63.2

Q ss_pred             HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHh----CCCC---CCceEEEccCCC-CCC
Q 018405          179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKN----APSY---LGIEHVGGDFFE-SVP  250 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~----a~~~---~~v~~~~~D~~~-~~~  250 (356)
                      ..+..+++... ..+...|||||+|.|.++..|++....+.++-.| +..++.    ....   ++++++.+|+.+ +.|
T Consensus         8 ~i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D-~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~   85 (278)
T d1zq9a1           8 LIINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD-PRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   85 (278)
T ss_dssp             HHHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESC-HHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEc-cchhHHHHHHHhhhccccchhhhHHHHhhhhhh
Confidence            34567777766 7778899999999999999999987655555555 332222    2222   579999999998 666


Q ss_pred             CCcEEEecccccCCChHHHHHHHHHHHHh
Q 018405          251 EADTILMKWVLSSFDDEQSLKLLKNCYKA  279 (356)
Q Consensus       251 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~  279 (356)
                      ..+.|+. +.=++.    ...++.++...
T Consensus        86 ~~~~vV~-NLPY~I----ss~il~~~~~~  109 (278)
T d1zq9a1          86 FFDTCVA-NLPYQI----SSPFVFKLLLH  109 (278)
T ss_dssp             CCSEEEE-ECCGGG----HHHHHHHHHHC
T ss_pred             hhhhhhc-chHHHH----HHHHHHHHHhh
Confidence            5555554 333433    45666665544

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.40  E-value=3.8e-05  Score=63.62  Aligned_cols=94  Identities=18%  Similarity=0.225  Sum_probs=69.4

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH---HHhCCC---CCCceEEEccCCC-----CCCCC-cEEEe
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV---IKNAPS---YLGIEHVGGDFFE-----SVPEA-DTILM  257 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~---~~~v~~~~~D~~~-----~~~~~-D~i~~  257 (356)
                      ++...+++|||+|.|.-+.-++-.+|+.+++.+|. ..-   ++.+..   ..++.++.....+     +..+. |+|++
T Consensus        68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence            34567999999999999999998999999999994 332   222211   2577777765543     12223 99999


Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      ..+-      ....++.-+...+++||++++.-
T Consensus       148 RAva------~l~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         148 RAVA------RLSVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             ECCS------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             hhhh------CHHHHHHHHhhhcccCCEEEEEC
Confidence            8763      26889999999999999988844

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=9.3e-05  Score=61.95  Aligned_cols=92  Identities=12%  Similarity=0.143  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC----CCCceEEEccCCC-CCCC--
Q 018405          179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS----YLGIEHVGGDFFE-SVPE--  251 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~v~~~~~D~~~-~~~~--  251 (356)
                      ..+..+++.+. ..+...|||||||.|.++..|++....+.++-.| +..++..+.    .++++++.+|+.+ +.++  
T Consensus         8 ~~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~   85 (252)
T d1qyra_           8 FVIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELD-RDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA   85 (252)
T ss_dssp             HHHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCC-HHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred             HHHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCCceEEEEec-cchhHHHHHHhhhccchhHHhhhhhhhcccccc
Confidence            44567777776 7788999999999999999999976554444444 444443322    3689999999987 4322  


Q ss_pred             ----CcEEEecccccCCChHHHHHHHHHH
Q 018405          252 ----ADTILMKWVLSSFDDEQSLKLLKNC  276 (356)
Q Consensus       252 ----~D~i~~~~vlh~~~~~~~~~~L~~~  276 (356)
                          .-+.++.+.=++.+    ..++.++
T Consensus        86 ~~~~~~~~vvgNlPY~Is----s~Il~~l  110 (252)
T d1qyra_          86 EKMGQPLRVFGNLPYNIS----TPLMFHL  110 (252)
T ss_dssp             HHHTSCEEEEEECCTTTH----HHHHHHH
T ss_pred             cccCCCeEEEecchHHHH----HHHHHHh
Confidence                13566677666664    3455444

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.15  E-value=0.00018  Score=51.07  Aligned_cols=67  Identities=16%  Similarity=0.196  Sum_probs=52.8

Q ss_pred             HHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchH
Q 018405           30 MHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKY  106 (356)
Q Consensus        30 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~  106 (356)
                      +..-.++.|+..|...   |+.|+.|||+.++++      +. .+.+.|+.|...|+++.....+++   .|++|+.|..
T Consensus        13 l~~p~r~~IL~~L~~~---~~~~~~eLa~~l~is------~~-~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~   82 (100)
T d1ub9a_          13 LGNPVRLGIMIFLLPR---RKAPFSQIQKVLDLT------PG-NLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME   82 (100)
T ss_dssp             HHSHHHHHHHHHHHHH---SEEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred             cCCHHHHHHHHHhccC---CCeeHHHHHHHHhhc------cc-cccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHH
Confidence            3334567788888665   589999999999998      77 899999999999999975433222   4999988863

>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Metal-sensing transcriptional repressor CzrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.13  E-value=0.00026  Score=49.48  Aligned_cols=63  Identities=24%  Similarity=0.331  Sum_probs=49.2

Q ss_pred             HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      .+|.--.++.|+..|..    ++.++.||++.+|++      +. .+.+.|+.|...|++..+.+...-.|+++
T Consensus        13 kaL~d~~Rl~Il~~L~~----~~~~v~el~~~l~~s------~~-~vS~HL~~L~~~glv~~~r~G~~~~Y~l~   75 (94)
T d1r1ua_          13 KALGDYNRIRIMELLSV----SEASVGHISHQLNLS------QS-NVSHQLKLLKSVHLVKAKRQGQSMIYSLD   75 (94)
T ss_dssp             HHTCSHHHHHHHHHHHH----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEES
T ss_pred             HHhCCHHHHHHHHHHHc----CCccHHHHHHHHCCC------HH-HHHHHHHHHHHCCceEEEEECCEEEEEEC
Confidence            44555567778888887    589999999999997      77 89999999999999997543212346665

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.0022  Score=56.37  Aligned_cols=99  Identities=11%  Similarity=0.157  Sum_probs=66.0

Q ss_pred             HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC---
Q 018405          181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP---  250 (356)
Q Consensus       181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~---  250 (356)
                      +..+.+.+. ..+..+|||+-||+|.++..|++..  .+++++|. +..++.|+.+      .+++++.+|..+..+   
T Consensus       201 ~~~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~  277 (358)
T d1uwva2         201 VARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP  277 (358)
T ss_dssp             HHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG
T ss_pred             HHHHHHhhc-cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhh
Confidence            345555554 6678899999999999999998854  46888885 7777766542      678999998876321   


Q ss_pred             ---CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          251 ---EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       251 ---~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                         .. |+|++     +-|..-+.+.++.+.+. +|.-.++|
T Consensus       278 ~~~~~~d~vil-----DPPR~G~~~~~~~l~~~-~~~~ivYV  313 (358)
T d1uwva2         278 WAKNGFDKVLL-----DPARAGAAGVMQQIIKL-EPIRIVYV  313 (358)
T ss_dssp             GGTTCCSEEEE-----CCCTTCCHHHHHHHHHH-CCSEEEEE
T ss_pred             hhhccCceEEe-----CCCCccHHHHHHHHHHc-CCCEEEEE
Confidence               12 88877     22333233455555554 55545545

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=96.89  E-value=0.0045  Score=52.69  Aligned_cols=97  Identities=14%  Similarity=0.112  Sum_probs=74.0

Q ss_pred             CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC---------CCCceEEEccCCCCCC----------CC
Q 018405          192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS---------YLGIEHVGGDFFESVP----------EA  252 (356)
Q Consensus       192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~~----------~~  252 (356)
                      .+...|+.+|||-=.....+ ...++++++-+|+|.+++.-++         ..+..++..|+.++++          +.
T Consensus        88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~  166 (297)
T d2uyoa1          88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA  166 (297)
T ss_dssp             TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred             hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence            35677888999988877776 3457889999999988763221         2346777888775321          11


Q ss_pred             -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405          253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~  289 (356)
                       -++++-.++++++.++..++|+.+.+...||+.|++-
T Consensus       167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d  204 (297)
T d2uyoa1         167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE  204 (297)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence             6778888999999999999999999999999988773

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.86  E-value=0.0066  Score=52.79  Aligned_cols=150  Identities=17%  Similarity=0.195  Sum_probs=89.5

Q ss_pred             CCceEEEEcCCccHHHH-------H-HHHh--------CCCCeEEEccchH-----HHHhCCC---CCC---ceEEEccC
Q 018405          193 HVKKLVDVGGGLGATLN-------M-IISK--------YPRIKGINYDLPY-----VIKNAPS---YLG---IEHVGGDF  245 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~-------~-l~~~--------~p~~~~~~~D~~~-----~~~~a~~---~~~---v~~~~~D~  245 (356)
                      +..+|.|+||.+|..+.       . +.+.        -|...+..-|+|.     ..+....   ..+   +.-+.|.|
T Consensus        51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF  130 (359)
T d1m6ex_          51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence            45789999999998763       2 2211        3566777778764     2222211   112   34467888


Q ss_pred             CC-CCCCC--cEEEecccccCCCh-------------------------------HHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          246 FE-SVPEA--DTILMKWVLSSFDD-------------------------------EQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       246 ~~-~~~~~--D~i~~~~vlh~~~~-------------------------------~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      .. -+|..  |+++++..||.++.                               .|...+|+.=.+=|.|||++++.-.
T Consensus       131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~  210 (359)
T d1m6ex_         131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred             hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence            88 67876  99999999998652                               1345688888888999999999876


Q ss_pred             ccCCCCCCch-h----hh-hhhhhhhhhhhhcC---------CCccCCHHHHHHHHHHcC-CcceeE
Q 018405          292 TIPEVPENSA-T----SR-EISILDTICLFQVP---------HGRERTKQEYSELAIKAG-FKGVNY  342 (356)
Q Consensus       292 ~~~~~~~~~~-~----~~-~~~~~~~~~~~~~~---------~~~~~t~~e~~~ll~~aG-f~~~~~  342 (356)
                      ..++...... .    .. ...+.++..-....         -...+|.+|+++.+++.| |.+.+.
T Consensus       211 gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~  277 (359)
T d1m6ex_         211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI  277 (359)
T ss_dssp             ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred             ccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence            6554321110 0    00 00111111000000         123469999999998876 555443

>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: SmtB repressor
species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]

Probab=96.85  E-value=0.00049  Score=48.41  Aligned_cols=62  Identities=15%  Similarity=0.280  Sum_probs=47.1

Q ss_pred             HHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           29 AMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        29 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      +|.--.++.|+..|..    ++.++.|||+.+|++      +. .+.+.|+.|...|+|..+.+...-.|+++
T Consensus        19 aL~~p~Rl~Il~~L~~----~~~~v~ela~~l~is------~s-tvS~HL~~L~~aglV~~~r~G~~~~Y~l~   80 (98)
T d1r1ta_          19 VLADPNRLRLLSLLAR----SELCVGDLAQAIGVS------ES-AVSHQLRSLRNLRLVSYRKQGRHVYYQLQ   80 (98)
T ss_dssp             HHCCHHHHHHHHHHTT----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEES
T ss_pred             HhCCHHHHHHHHHHHc----CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEEEEECCEEEEEEC
Confidence            3444456667788876    589999999999997      77 89999999999999997543222346654

>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Cadmium efflux system accessory protein CadC
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.74  E-value=0.00094  Score=47.81  Aligned_cols=64  Identities=19%  Similarity=0.189  Sum_probs=49.5

Q ss_pred             HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      .+|.--.++.|+..|...   ++.++.||++.+|++      +. .+.+.|+.|...|+|..+.+...-.|+++
T Consensus        26 kaLadp~Rl~Il~~L~~~---~~~~v~ela~~l~~s------~s-~vS~HL~~L~~aGlv~~~r~G~~~~Y~l~   89 (108)
T d1u2wa1          26 KAIADENRAKITYALCQD---EELCVCDIANILGVT------IA-NASHHLRTLYKQGVVNFRKEGKLALYSLG   89 (108)
T ss_dssp             HHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEC----CCEEEES
T ss_pred             HHhCCHHHHHHHHHHHhC---CCccHHHHHHHHccC------hh-HHHHHHHHHHHCCeeEEEEECCEEEEEEC
Confidence            566667889999988654   589999999999997      77 89999999999999997532212346654

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.01  Score=51.11  Aligned_cols=103  Identities=12%  Similarity=0.176  Sum_probs=81.9

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC---------------------------CCCceEEEccC
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS---------------------------YLGIEHVGGDF  245 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~v~~~~~D~  245 (356)
                      +...|+-+|||.=....++...+|+++++-+|+|++++.-.+                           .++..++..|+
T Consensus        96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL  175 (328)
T d1rjda_          96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  175 (328)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence            456899999999999989988899999999999887652210                           14678888898


Q ss_pred             CC-CC---------C-CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCC
Q 018405          246 FE-SV---------P-EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV  296 (356)
Q Consensus       246 ~~-~~---------~-~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~  296 (356)
                      .+ ..         . +. -++++-.+|.+++.++..++|+.+.+..+ +|.+++.|++.+..
T Consensus       176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~~  237 (328)
T d1rjda_         176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGSQ  237 (328)
T ss_dssp             TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCCS
T ss_pred             CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCCC
Confidence            76 21         1 11 68899999999999999999999998875 57888999986543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.59  E-value=0.0015  Score=58.97  Aligned_cols=110  Identities=19%  Similarity=0.173  Sum_probs=72.7

Q ss_pred             HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-------------CCeEEEccc-hHHHHhCCC--------CCC
Q 018405          180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-------------RIKGINYDL-PYVIKNAPS--------YLG  237 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~--------~~~  237 (356)
                      .+.-+++.+. .....+|+|-.||+|.++....+...             .....++|. +.....++.        .+.
T Consensus       150 Iv~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~  228 (425)
T d2okca1         150 LIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR  228 (425)
T ss_dssp             HHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred             hhHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccc
Confidence            4455555555 55678999999999999988776542             123667774 555444421        245


Q ss_pred             ceEEEccCCCCCCC--CcEEEecccccCCC---------------hHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          238 IEHVGGDFFESVPE--ADTILMKWVLSSFD---------------DEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       238 v~~~~~D~~~~~~~--~D~i~~~~vlh~~~---------------~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      ..+..+|.+...+.  .|+|+++--...-.               ...-..++.++.+.|+|||++.++-
T Consensus       229 ~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~  298 (425)
T d2okca1         229 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL  298 (425)
T ss_dssp             CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence            67788888874333  29998865553211               0113468999999999999988864

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=96.36  E-value=0.0017  Score=51.35  Aligned_cols=91  Identities=12%  Similarity=0.067  Sum_probs=59.4

Q ss_pred             CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCC----CCCC--CcEEEec
Q 018405          194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFE----SVPE--ADTILMK  258 (356)
Q Consensus       194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~----~~~~--~D~i~~~  258 (356)
                      ..+|||+-||||.++.+.+.+... .++.+|. ...++..+++        ....+...|..+    ....  .|+|++-
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD  122 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  122 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             cceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence            469999999999999999987654 7888885 5554443321        235556666443    1112  2999884


Q ss_pred             ccccCCChHHHHHHHHHHHH--hCCCCCEEEE
Q 018405          259 WVLSSFDDEQSLKLLKNCYK--ALPDGGKLLN  288 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~--~L~pgG~lii  288 (356)
                      ---. .  ....++|..+.+  +|+++|.+++
T Consensus       123 PPY~-~--~~~~~~l~~l~~~~~L~~~~liii  151 (183)
T d2ifta1         123 PPFH-F--NLAEQAISLLCENNWLKPNALIYV  151 (183)
T ss_dssp             CCSS-S--CHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             hhHh-h--hhHHHHHHHHHHhCCcCCCcEEEE
Confidence            3322 2  235677777765  6898887776

>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=95.91  E-value=0.0035  Score=42.56  Aligned_cols=53  Identities=8%  Similarity=0.118  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      +++|..+||+.++++      +. .+.++|+.|...|++.++.....-.+.+|+.|..+.
T Consensus        20 ~~lt~~eLa~~l~i~------~~-~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G~~~l   72 (85)
T d3ctaa1          20 AYLTSSKLADMLGIS------QQ-SASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVL   72 (85)
T ss_dssp             EECCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeeeecccccccceECHHHHHHH
Confidence            589999999999998      77 999999999999999974321123477888887443

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical protein AF2008
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.73  E-value=0.0048  Score=44.04  Aligned_cols=46  Identities=15%  Similarity=0.377  Sum_probs=38.6

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      +..++..|.+.   |+.|+.|||+.+|++      +. .+.+.|+-|...|++.+.
T Consensus        22 e~~v~~~L~~~---g~~t~~eia~~~~i~------~~-~v~~~l~~L~~~GlV~r~   67 (109)
T d1sfxa_          22 DVRIYSLLLER---GGMRVSEIARELDLS------AR-FVRDRLKVLLKRGFVRRE   67 (109)
T ss_dssp             HHHHHHHHHHH---CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHhc---CCCCHHHHHHHhCCC------cc-hHHHHHHHHHhCCCEEEE
Confidence            34456666665   599999999999997      77 899999999999999864

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.006  Score=38.70  Aligned_cols=55  Identities=16%  Similarity=0.288  Sum_probs=42.4

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      ++.|+..|.++   +..|.+|||+.+|++      .. -+.+-+..|...|+.... ..+ ..|+++
T Consensus         7 ~~~iL~~L~~~---~~~s~~eLa~~l~vS------~~-ti~r~i~~L~~~G~~I~~-~~g-~GY~L~   61 (63)
T d1biaa1           7 PLKLIALLANG---EFHSGEQLGETLGMS------RA-AINKHIQTLRDWGVDVFT-VPG-KGYSLP   61 (63)
T ss_dssp             HHHHHHHHTTS---SCBCHHHHHHHHTSC------HH-HHHHHHHHHHHTTCCCEE-ETT-TEEECS
T ss_pred             HHHHHHHHHHC---CcCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCcEEE-eCC-CeEEeC
Confidence            45577788764   589999999999998      77 899999999999985532 222 358774

>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator YusO
species: Bacillus subtilis [TaxId: 1423]

Probab=95.67  E-value=0.026  Score=42.01  Aligned_cols=62  Identities=19%  Similarity=0.178  Sum_probs=48.6

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++..|...   ++.|+.+||+.++++      +. .+.+.++.|+..|++++...+.++   .+.+|+.|..+.
T Consensus        39 ~iL~~l~~~---~~~t~~~la~~~~i~------~~-~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~  103 (143)
T d1s3ja_          39 FVLASLKKH---GSLKVSEIAERMEVK------PS-AVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF  103 (143)
T ss_dssp             HHHHHHHHH---SEEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred             HHHHHHHHC---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHH
Confidence            456677665   489999999999998      77 899999999999999975433333   378888887544

>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator TM0710
species: Thermotoga maritima [TaxId: 2336]

Probab=95.65  E-value=0.021  Score=42.36  Aligned_cols=63  Identities=8%  Similarity=0.089  Sum_probs=48.3

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .-++..|...   ++.|+.+||+.++++      +. .+.+.++-|+..|++.+...+.+   -.+.+|+.|..+.
T Consensus        33 ~~iL~~i~~~---~~~t~~~la~~l~i~------~~-tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~   98 (139)
T d2a61a1          33 FDILQKIYFE---GPKRPGELSVLLGVA------KS-TVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI   98 (139)
T ss_dssp             HHHHHHHHHH---CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHc---CCCCHHHHHHHhCCC------cc-cchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHH
Confidence            3345556555   589999999999998      77 89999999999999997543332   3578888887555

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.61  E-value=0.034  Score=42.60  Aligned_cols=89  Identities=16%  Similarity=0.118  Sum_probs=62.2

Q ss_pred             eEEEEcCCc-c-HHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCCcEEEecccccCCChHHHHH
Q 018405          196 KLVDVGGGL-G-ATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEADTILMKWVLSSFDDEQSLK  271 (356)
Q Consensus       196 ~vLDiG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~D~i~~~~vlh~~~~~~~~~  271 (356)
                      +|+=||||. | .++..|.+..+..+++++|. ++.++.+.+...+.....+... .....|+|+++     .|.+....
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila-----~p~~~~~~   77 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFRE   77 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc-----CCchhhhh
Confidence            588899994 4 46667777778889999996 7777777665444444444333 22244988875     34466889


Q ss_pred             HHHHHHHhCCCCCEEEEE
Q 018405          272 LLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       272 ~L~~~~~~L~pgG~lii~  289 (356)
                      +++++...++++..++-+
T Consensus        78 vl~~l~~~~~~~~ii~d~   95 (171)
T d2g5ca2          78 IAKKLSYILSEDATVTDQ   95 (171)
T ss_dssp             HHHHHHHHSCTTCEEEEC
T ss_pred             hhhhhhcccccccccccc
Confidence            999999999988665543

>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF1790-like
domain: Transcriptional regulatory protein PF1790
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.61  E-value=0.0053  Score=48.77  Aligned_cols=61  Identities=11%  Similarity=0.180  Sum_probs=47.3

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-----Ccceecchhch
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-----QRLYSLASVAK  105 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-----~~~y~~t~~~~  105 (356)
                      .++.|+..|.+    ||.|+.|||+.+|++      +. .+++.|+.|...|+|+...+..     ...|+++..+.
T Consensus        16 ~R~~Il~~L~~----~~~~~~ela~~l~~s------~~-~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~   81 (194)
T d2p4wa1          16 TRRRILFLLTK----RPYFVSELSRELGVG------QK-AVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR   81 (194)
T ss_dssp             HHHHHHHHHHH----SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred             HHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence            45556677776    599999999999998      77 9999999999999998653221     13578777654

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=95.60  E-value=0.0056  Score=39.90  Aligned_cols=43  Identities=19%  Similarity=0.379  Sum_probs=38.2

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      .|+..|...   |+.|..|||+.+|++      +. -+.+.++.|...|++.+
T Consensus        10 ~Il~~l~~~---g~~sr~eLa~~~glS------~~-Tv~~~l~~L~~~Glv~e   52 (71)
T d1z05a1          10 RVYKLIDQK---GPISRIDLSKESELA------PA-SITKITRELIDAHLIHE   52 (71)
T ss_dssp             HHHHHHHHH---CSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHc---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE
Confidence            477778776   599999999999998      77 89999999999999984

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.38  E-value=0.023  Score=48.57  Aligned_cols=104  Identities=13%  Similarity=0.147  Sum_probs=65.7

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCC------CCCceEEEccCCC-CC-CC-CcEEEe--
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPS------YLGIEHVGGDFFE-SV-PE-ADTILM--  257 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~-~~-~D~i~~--  257 (356)
                      ..++.+|||+++|.|.=+..++.... +..++..|. +.-++....      ..++.....|... +. .. .|.|++  
T Consensus       114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa  193 (313)
T d1ixka_         114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  193 (313)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence            56778999999999998888887655 457888885 444433322      1456666666554 22 22 277765  


Q ss_pred             ----cccc-------cCCChHH-------HHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          258 ----KWVL-------SSFDDEQ-------SLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       258 ----~~vl-------h~~~~~~-------~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                          ..++       ..+..++       -.++|+++.+.++|||+|+-......
T Consensus       194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~  248 (313)
T d1ixka_         194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE  248 (313)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence                1111       1122222       34788999999999998877665443

>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein ywnA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.25  E-value=0.01  Score=43.49  Aligned_cols=44  Identities=18%  Similarity=0.165  Sum_probs=36.3

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      ++.|.++||+.++++      |. .++++|+.|...|+++..+ ...|.| ++
T Consensus        17 ~~~ss~~IA~~~~~~------~~-~v~kIl~~L~~aglV~s~r-G~~GGy-La   60 (127)
T d1xd7a_          17 EKTSSEIIADSVNTN------PV-VVRRMISLLKKADILTSRA-GVPGAS-LK   60 (127)
T ss_dssp             SCCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEECCS-SSSSCE-ES
T ss_pred             CCCCHHHHHHHhCcC------HH-HHHHHHHHHHHhCcccccC-CCCCcc-cc
Confidence            489999999999997      88 9999999999999999743 223445 54

>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator OEOE1854
species: Oenococcus oeni [TaxId: 1247]

Probab=95.15  E-value=0.038  Score=40.58  Aligned_cols=67  Identities=9%  Similarity=0.156  Sum_probs=49.3

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++.++..|...+ +++.|..|||+.++++      +. .+.++++.|+..|++.+.....+.   .+.+|+.|..+.
T Consensus        30 ~q~~vL~~l~~~~-~~~it~~ela~~~~~~------~~-~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~   99 (135)
T d3broa1          30 TQMTIIDYLSRNK-NKEVLQRDLESEFSIK------SS-TATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE   99 (135)
T ss_dssp             HHHHHHHHHHHTT-TSCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred             HHHHHHHHHHHcC-CCCCCHHHHHHHHCcC------Hh-HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHH
Confidence            4445566666542 2479999999999998      77 899999999999999975433222   588888876433

>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA3067
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.13  E-value=0.016  Score=43.33  Aligned_cols=66  Identities=20%  Similarity=0.188  Sum_probs=49.1

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .++.++..|...+  |+.|+.+||+.++++      +. .+.+.++-|+..|+|++.....+   -.+.+|+.|..+.
T Consensus        35 ~q~~vL~~L~~~~--g~~t~~~La~~~~~~------~~-~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~  103 (145)
T d2hr3a1          35 SQLVVLGAIDRLG--GDVTPSELAAAERMR------SS-NLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL  103 (145)
T ss_dssp             HHHHHHHHHHHTT--SCBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcC--CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHH
Confidence            4556666776543  589999999999998      77 89999999999999996532222   2577888887444

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.12  E-value=0.017  Score=36.71  Aligned_cols=58  Identities=16%  Similarity=0.219  Sum_probs=44.1

Q ss_pred             HHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCc-ccceeeCCCcceecc
Q 018405           31 HAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNA-LHCSFVDGQRLYSLA  101 (356)
Q Consensus        31 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~-l~~~~~~~~~~y~~t  101 (356)
                      +.--...|++.|.+..  +++|+.+||+.++++      +. -++|-+..|...|+ +..   . .+.|.+.
T Consensus         5 k~eR~~~Il~~L~~~~--~~vs~~~La~~l~VS------~~-TI~rdi~~L~~~G~~I~~---~-~gGY~L~   63 (65)
T d1j5ya1           5 RQERLKSIVRILERSK--EPVSGAQLAEELSVS------RQ-VIVQDIAYLRSLGYNIVA---T-PRGYVLA   63 (65)
T ss_dssp             HHHHHHHHHHHHHHCS--SCBCHHHHHHHHTSC------HH-HHHHHHHHHHHHTCCCEE---E-TTEEECC
T ss_pred             HHHHHHHHHHHHHHcC--CCCcHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeEEE---e-CCCEEeC
Confidence            3344556778886642  579999999999998      77 89999999999998 542   2 3578875

>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.10  E-value=0.011  Score=37.23  Aligned_cols=42  Identities=12%  Similarity=0.264  Sum_probs=37.6

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      .|++.|.+    +|+|-.|||+.+|++      +. -+.++++.|.+.|++.+
T Consensus         3 ~Il~~i~~----~pisr~eLa~~~gls------~~-TVs~~v~~L~~~GlV~e   44 (62)
T d2hoea1           3 RILKRIMK----SPVSRVELAEELGLT------KT-TVGEIAKIFLEKGIVVE   44 (62)
T ss_dssp             CSHHHHHH----SCBCHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHH----CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence            46788877    599999999999998      77 89999999999999994

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.08  E-value=0.044  Score=46.87  Aligned_cols=67  Identities=13%  Similarity=0.189  Sum_probs=44.2

Q ss_pred             HHHHHHHHhcCCC------CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH---HHhCCCCCCceEEEccCCC
Q 018405          180 VMEKVLESYKGFE------HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV---IKNAPSYLGIEHVGGDFFE  247 (356)
Q Consensus       180 ~~~~~~~~~~~~~------~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~~~~v~~~~~D~~~  247 (356)
                      .+..+++.+. ++      ....|||||.|.|.++..|+++.---++++++. +..   ++.-...++++++.+|+..
T Consensus        25 i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          25 VYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             HHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             HHHHHHHHhc-CCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            3455665554 32      457899999999999999998632225666663 333   3322234689999999874

>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Archaeal DNA-binding protein
domain: Sso10a (SSO10449)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.97  E-value=0.015  Score=39.64  Aligned_cols=48  Identities=15%  Similarity=0.266  Sum_probs=41.4

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV  108 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~  108 (356)
                      +.+...|...++++      +. .+.+.|+.|+..|++.   +. ++.|.+|+.|..+.
T Consensus        18 g~~kT~i~~~aNLs------~~-~~~kyl~~L~~~GLI~---~~-~~~Y~iT~kG~~~L   65 (90)
T d1r7ja_          18 GSPKTRIMYGANLS------YA-LTGRYIKMLMDLEIIR---QE-GKQYMLTKKGEELL   65 (90)
T ss_dssp             CBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEE---EE-TTEEEECHHHHHHH
T ss_pred             CCCccHHHHHcCCC------HH-HHHHHHHHHHHCCCee---ec-CCEEEECccHHHHH
Confidence            45789999999998      78 9999999999999998   33 48999999998443

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=94.95  E-value=0.0067  Score=43.19  Aligned_cols=36  Identities=11%  Similarity=0.200  Sum_probs=33.0

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      ||.|+.|||+.++++      +. .+.+.|+-|...|+|.+..
T Consensus        35 ~~~t~~eLa~~~~i~------~~-tvs~~l~~L~~~GlV~r~~   70 (109)
T d2d1ha1          35 KPITSEELADIFKLS------KT-TVENSLKKLIELGLVVRTK   70 (109)
T ss_dssp             SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEE
T ss_pred             CCCCHHHHHHHHCcc------Hh-HHHHHHHHHHHCCCEEEee
Confidence            589999999999997      77 8999999999999999653

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Mlc protein N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.017  Score=37.41  Aligned_cols=43  Identities=12%  Similarity=0.268  Sum_probs=38.3

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      .|+..|...   |+.|-.|||+.+|++      +. -+.++++.|...|++.+
T Consensus         9 ~Il~~i~~~---g~~sr~eLa~~~gLS------~~-Tvs~iv~~L~~~glv~e   51 (70)
T d1z6ra1           9 AVYRLIDQL---GPVSRIDLSRLAQLA------PA-SITKIVHEMLEAHLVQE   51 (70)
T ss_dssp             HHHHHHHSS---CSCCHHHHHHHTTCC------HH-HHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHc---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEe
Confidence            367788876   699999999999998      77 89999999999999984

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=94.77  E-value=0.032  Score=35.27  Aligned_cols=42  Identities=21%  Similarity=0.244  Sum_probs=35.8

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL  100 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~  100 (356)
                      .|-++.|||..+|++      +. .++.+|+.|+..|.+.+   -.++.|-+
T Consensus        22 ~PP~vrdl~~~l~~~------e~-~~~~lL~~l~~~G~lvk---I~~d~yfh   63 (64)
T d1lvaa3          22 QPPSFKEVAGSFNLD------PS-ELEELLHYLVREGVLVK---INDEFYWH   63 (64)
T ss_dssp             SCCBHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEE---SSSSBEEE
T ss_pred             CCCcHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEE---eccccccc
Confidence            488999999999997      77 89999999999999994   44577643

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.023  Score=47.78  Aligned_cols=104  Identities=15%  Similarity=0.232  Sum_probs=65.6

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC----CC--CCceEEEccCCC-C--CCCC-cEEEe--
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP----SY--LGIEHVGGDFFE-S--VPEA-DTILM--  257 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~--~~v~~~~~D~~~-~--~~~~-D~i~~--  257 (356)
                      ..+..+|||+++|.|.=+..++....+.+++.+|. +.-++..+    +.  ..+..+..|... .  .+.. |.|++  
T Consensus       100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da  179 (284)
T d1sqga2         100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  179 (284)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence            56788999999999999999998888888888884 33222221    11  233444444332 1  2222 77764  


Q ss_pred             ----cccc-------cCCChHH-------HHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          258 ----KWVL-------SSFDDEQ-------SLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       258 ----~~vl-------h~~~~~~-------~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                          ..++       ..++..+       -.++|+++.+.|+|||+|+-..-...
T Consensus       180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~  234 (284)
T d1sqga2         180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL  234 (284)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred             cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence                2222       2222222       35789999999999998887665543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.71  E-value=0.048  Score=42.27  Aligned_cols=99  Identities=22%  Similarity=0.110  Sum_probs=61.5

Q ss_pred             hcCCCCCceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEc---cCC-------C-CCCCC-c
Q 018405          188 YKGFEHVKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGG---DFF-------E-SVPEA-D  253 (356)
Q Consensus       188 ~~~~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~---D~~-------~-~~~~~-D  253 (356)
                      ..+.++..+||-+|+| .|.++..+++...-.+++++|. +.-.+.+++..--.++..   |..       + ..+.+ |
T Consensus        23 ~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~D  102 (182)
T d1vj0a2          23 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGAD  102 (182)
T ss_dssp             CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEE
T ss_pred             HhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCce
Confidence            3336677899999998 4778888888764347888885 666666654421122211   110       0 11233 8


Q ss_pred             EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405          254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP  294 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~  294 (356)
                      +|+-.-.     .   ...++.+.+.++|||+++++....+
T Consensus       103 vvid~vG-----~---~~~~~~a~~~l~~~G~iv~~G~~~~  135 (182)
T d1vj0a2         103 FILEATG-----D---SRALLEGSELLRRGGFYSVAGVAVP  135 (182)
T ss_dssp             EEEECSS-----C---TTHHHHHHHHEEEEEEEEECCCCSC
T ss_pred             EEeecCC-----c---hhHHHHHHHHhcCCCEEEEEeecCC
Confidence            7764321     1   3457788899999999998875443

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.70  E-value=0.057  Score=42.50  Aligned_cols=104  Identities=14%  Similarity=0.016  Sum_probs=67.3

Q ss_pred             CCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC---------CCCC-cEEEec
Q 018405          191 FEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES---------VPEA-DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~---------~~~~-D~i~~~  258 (356)
                      .++..+||.+|||. |..+..+++.....+++++|. +.-++.+++.. ...+.-...++         .+.+ |+++-.
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G-a~~~~~~~~~~~~~~i~~~t~g~g~D~vid~  101 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG-FEIADLSLDTPLHEQIAALLGEPEVDCAVDA  101 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT-CEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc-ccEEEeCCCcCHHHHHHHHhCCCCcEEEEEC
Confidence            77889999999997 667788888777778999985 77777776542 23222111111         1223 877743


Q ss_pred             cc------ccC-CChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405          259 WV------LSS-FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE  295 (356)
Q Consensus       259 ~v------lh~-~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~  295 (356)
                      --      .|+ .........|+.+.++++|||++.++-...+.
T Consensus       102 vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~  145 (195)
T d1kola2         102 VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTE  145 (195)
T ss_dssp             CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSC
T ss_pred             ccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCC
Confidence            22      111 11112357899999999999999998765443

>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein BC1842
species: Bacillus cereus [TaxId: 1396]

Probab=94.65  E-value=0.011  Score=44.00  Aligned_cols=44  Identities=7%  Similarity=0.101  Sum_probs=36.6

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      .+.|..+||+.++++      +. .++++|..|...|+|...  .|.|.|.+.
T Consensus        22 ~~vss~~IA~~~~i~------~~-~l~kil~~L~~aGlv~S~--rG~GG~~L~   65 (138)
T d1ylfa1          22 SLCTSDYMAESVNTN------PV-VIRKIMSYLKQAGFVYVN--RGPGGAGLL   65 (138)
T ss_dssp             GGCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEC-----CCEEES
T ss_pred             CcCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEee--cCCCCceec
Confidence            478999999999997      88 999999999999999974  234778765

>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtcD
species: Bacillus subtilis [TaxId: 1423]

Probab=94.62  E-value=0.039  Score=37.94  Aligned_cols=53  Identities=17%  Similarity=0.200  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           49 AKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        49 ~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      |+....||.+.+ |++      +. .|.+=|+.|...|++++...+..   -.|++|+.|..|.
T Consensus        23 g~~rF~el~~~l~gis------~~-~Ls~rLk~Le~~glv~r~~~~~~p~~veY~LT~~G~~L~   79 (95)
T d2hzta1          23 GKKRTSELKRLMPNIT------QK-MLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE   79 (95)
T ss_dssp             CCBCHHHHHHHCTTSC------HH-HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred             CCCCHHHHHHHhhcCC------hh-HHHHHHHHHHHhHHHhheeccccccchhhhhhhhHHHHH
Confidence            589999999997 997      77 89999999999999996533221   2499999886554

>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator TM0816
species: Thermotoga maritima [TaxId: 2336]

Probab=94.59  E-value=0.022  Score=42.29  Aligned_cols=65  Identities=14%  Similarity=0.053  Sum_probs=50.7

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      .+.-++..|...   ++.|+.+||+.++++      +. .+.+.++.|+..|++.+...+.+   -..++|+.|..+.
T Consensus        33 ~q~~iL~~l~~~---~~~t~~~La~~l~i~------~~-~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~  100 (140)
T d2etha1          33 TELYAFLYVALF---GPKKMKEIAEFLSTT------KS-NVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF  100 (140)
T ss_dssp             HHHHHHHHHHHH---CCBCHHHHHHHTTSC------HH-HHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHH
Confidence            455567777776   489999999999998      77 89999999999999997643333   2577788876443

>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: MexR repressor
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.52  E-value=0.027  Score=41.90  Aligned_cols=63  Identities=16%  Similarity=0.190  Sum_probs=48.0

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchH
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKY  106 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~  106 (356)
                      .+..++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|+|++...++++   .+.+|+.|..
T Consensus        37 ~q~~vL~~l~~~---~~~t~~~la~~l~~~------~~-~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~  102 (141)
T d1lnwa_          37 PDVHVLKLIDEQ---RGLNLQDLGRQMCRD------KA-LITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLA  102 (141)
T ss_dssp             HHHHHHHHHHSS---TTCBHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHH
T ss_pred             HHHHHHHHHHHC---CCCCHHHHHHHHCcc------Hh-HHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHH
Confidence            445566677665   479999999999998      77 899999999999999976433332   3567777753

>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Multiple antibiotic resistance repressor, MarR
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.02  Score=42.46  Aligned_cols=65  Identities=18%  Similarity=0.162  Sum_probs=50.0

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .+..++..|...   ++.|..+||+.++++      +. .+.+++..|...|++++...++++   .+++|+.|..+.
T Consensus        35 ~q~~vL~~l~~~---~~~t~~ela~~~~i~------~~-~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~  102 (138)
T d1jgsa_          35 AQFKVLCSIRCA---ACITPVELKKVLSVD------LG-ALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC  102 (138)
T ss_dssp             HHHHHHHHHHHH---SSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHhHHhC---cCCCHHHHHHHHCCC------Hh-HHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHH
Confidence            344555666665   489999999999997      77 999999999999999975433333   578888887544

>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Hypothetical protein PH1932
domain: Hypothetical protein PH1932
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.38  E-value=0.016  Score=45.54  Aligned_cols=66  Identities=5%  Similarity=0.137  Sum_probs=50.2

Q ss_pred             HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-----Ccceecch
Q 018405           28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-----QRLYSLAS  102 (356)
Q Consensus        28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-----~~~y~~t~  102 (356)
                      .+|.--.+..|++.|..    ||.|+.|||+.+|++      +. .+.+.|+.|...|+|+......     ...|.+|+
T Consensus        14 ~~l~~p~R~~Il~~L~~----~~~s~~ela~~lg~s------~~-~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~   82 (190)
T d1ulya_          14 KVMLEDTRRKILKLLRN----KEMTISQLSEILGKT------PQ-TIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTA   82 (190)
T ss_dssp             HHHHSHHHHHHHHHHTT----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESS
T ss_pred             HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeeccCCcceEEEEEcc
Confidence            45555567778888876    699999999999997      77 8999999999999997542211     13477765


Q ss_pred             hc
Q 018405          103 VA  104 (356)
Q Consensus       103 ~~  104 (356)
                      .+
T Consensus        83 ~~   84 (190)
T d1ulya_          83 DV   84 (190)
T ss_dssp             SE
T ss_pred             cc
Confidence            43

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.34  Score=36.71  Aligned_cols=99  Identities=12%  Similarity=-0.002  Sum_probs=63.0

Q ss_pred             HHhcCCCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC----------CCCC-
Q 018405          186 ESYKGFEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES----------VPEA-  252 (356)
Q Consensus       186 ~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~----------~~~~-  252 (356)
                      ++.. .++..+|+=+|+|. |.++..+++.....++++.|. +.-++.+++..--.++..+-.++          .+.+ 
T Consensus        20 ~~~~-~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~   98 (171)
T d1pl8a2          20 RRGG-VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKP   98 (171)
T ss_dssp             HHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred             HHhC-CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCc
Confidence            3344 67788999999985 456666776665557899995 77677666542222222221111          1223 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      |+|+-.--        ....++.+.+.++|||+++++....
T Consensus        99 Dvvid~~G--------~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          99 EVTIECTG--------AEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             SEEEECSC--------CHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             eEEEeccC--------CchhHHHHHHHhcCCCEEEEEecCC
Confidence            87765422        1467888999999999999987543

>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator MgrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.19  E-value=0.022  Score=42.08  Aligned_cols=65  Identities=11%  Similarity=0.223  Sum_probs=49.6

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .+..++..|...   ++.|..+||+.++++      +. .+.+.++-|+..|++++...+.++   ...+|+.|..+.
T Consensus        35 ~q~~vL~~i~~~---~~~t~~~la~~l~~~------~~-~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~~  102 (136)
T d2bv6a1          35 PQFLVLTILWDE---SPVNVKKVVTELALD------TG-TVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR  102 (136)
T ss_dssp             HHHHHHHHHHHS---SEEEHHHHHHHTTCC------TT-THHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcC---CCCCHHHHHHHHCCC------Hh-HHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHHH
Confidence            445566677775   489999999999997      66 899999999999999975433333   457788886443

>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal domain of RPA32
domain: C-terminal domain of RPA32
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.044  Score=35.03  Aligned_cols=57  Identities=9%  Similarity=0.193  Sum_probs=43.7

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      ..||..|...+...++++.+|++++ +++      .. .++.-++.|...|++-..  -++++|+.|
T Consensus         9 ~~V~~~i~s~~~~eGi~~~el~~~l~~~~------~~-~i~~aid~L~~eG~IYsT--iDddHfkst   66 (69)
T d1dpua_           9 NQVLNLIKACPRPEGLNFQDLKNQLKHMS------VS-SIKQAVDFLSNEGHIYST--VDDDHFKST   66 (69)
T ss_dssp             HHHHHHHHHCCCTTTEEHHHHHHHSTTSC------HH-HHHHHHHHHHHTTSEEEC--SSTTEEEES
T ss_pred             HHHHHHHHhCCCccCcCHHHHHHHccCCC------HH-HHHHHHHHHHhCCceecc--cccchhccc
Confidence            3455666554444689999999998 786      66 899999999999999953  235888866

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.07  E-value=0.086  Score=40.48  Aligned_cols=99  Identities=17%  Similarity=0.108  Sum_probs=62.4

Q ss_pred             HHHHhcCCCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC-------CCCC-c
Q 018405          184 VLESYKGFEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES-------VPEA-D  253 (356)
Q Consensus       184 ~~~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~-------~~~~-D  253 (356)
                      +.+... .++..+||-+|||. |.++..+++.....++++.|. +.-++.+++..-.+++..+-.+.       .+.+ |
T Consensus        20 ~~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          20 CINALK-VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             HHTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred             HHHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCc
Confidence            344444 77888999999984 457777887776667777774 66666665443233332221111       1223 7


Q ss_pred             EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      +|+-.-.        ....++.+.+.++|+|+++++..
T Consensus        99 ~vid~~G--------~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          99 FALESTG--------SPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             EEEECSC--------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEEEcCC--------cHHHHHHHHhcccCceEEEEEee
Confidence            7664321        24677888999999999998754

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.92  E-value=0.53  Score=35.39  Aligned_cols=97  Identities=12%  Similarity=0.060  Sum_probs=62.6

Q ss_pred             HHhcCCCCCceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-C-----------CCC
Q 018405          186 ESYKGFEHVKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-S-----------VPE  251 (356)
Q Consensus       186 ~~~~~~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~-----------~~~  251 (356)
                      +... .++..+||-+||| .|.++..+++.. +.+++++|. +.-.+.+++..--.....|-.. +           .+.
T Consensus        20 ~~~~-~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          20 RRAG-VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD   97 (170)
T ss_dssp             HHHT-CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             HHhC-CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhccccc
Confidence            3344 6778899999988 667777777765 579999995 6666666554222222222211 1           123


Q ss_pred             C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          252 A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       252 ~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      + |+|+-.-.        ....+..+.+.++|+|+++++-..
T Consensus        98 g~D~vid~~g--------~~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          98 LPNVTIDCSG--------NEKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             CCSEEEECSC--------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             CCceeeecCC--------ChHHHHHHHHHHhcCCceEEEecC
Confidence            3 77764321        246778888999999999998644

>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding protein Mj223
domain: DNA-binding protein Mj223
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.69  E-value=0.03  Score=42.01  Aligned_cols=49  Identities=14%  Similarity=0.348  Sum_probs=38.7

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG   94 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~   94 (356)
                      .++-.|...+  +|.|+.|||+.+|++      +. .+.+.++.|...|++.+...++
T Consensus        30 ~i~~~L~~~~--~plt~~ela~~l~vs------k~-~vs~~l~~L~~~GlV~r~~~~~   78 (151)
T d1ku9a_          30 AVYAILYLSD--KPLTISDIMEELKIS------KG-NVSMSLKKLEELGFVRKVWIKG   78 (151)
T ss_dssp             HHHHHHHHCS--SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEECCTT
T ss_pred             HHHHHHHhCC--CCcCHHHHHHHhCCC------cc-hHHHHHHHHHHCCCEEEEEcCC
Confidence            4455554432  589999999999998      77 9999999999999998654333

>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PA1607
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.68  E-value=0.053  Score=40.27  Aligned_cols=75  Identities=13%  Similarity=0.147  Sum_probs=54.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeC
Q 018405           14 FSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD   93 (356)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~   93 (356)
                      ++..++++..-|...+|..+         ..    |+....||.+.+|++      +. .|.+=|+.|...|++.+...+
T Consensus        10 v~~~l~ilg~kW~l~Il~~l---------~~----G~~rf~el~~~lgis------~~-vLs~rL~~L~~~gLv~r~~~~   69 (142)
T d2f2ea1          10 VARPLDVIGDGWSMLIVRDA---------FE----GLTRFGEFQKSLGLA------KN-ILAARLRNLVEHGVMVAVPAE   69 (142)
T ss_dssp             TTTTHHHHCSSSHHHHHHHH---------HT----TCCSHHHHHHHHCCC------HH-HHHHHHHHHHHTTSEEEEECS
T ss_pred             HHHHHHHHcCCCHHHHHHHH---------Hc----CCCCHHHHHHHhhcc------HH-HHHHHHHHHHHhcceeeecCC
Confidence            34455666666666665543         23    589999999999997      77 888899999999999863212


Q ss_pred             C--CcceecchhchHhh
Q 018405           94 G--QRLYSLASVAKYFV  108 (356)
Q Consensus        94 ~--~~~y~~t~~~~~l~  108 (356)
                      .  ...|++|+.|..|.
T Consensus        70 ~p~r~~Y~LT~~G~~L~   86 (142)
T d2f2ea1          70 SGSHQEYRLTDKGRALF   86 (142)
T ss_dssp             SSSCEEEEECHHHHTTH
T ss_pred             CCCeeEEecCcCcchHH
Confidence            1  14599999886444

>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein EF0647
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.65  E-value=0.071  Score=37.52  Aligned_cols=77  Identities=12%  Similarity=0.102  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           12 NNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      -+++..++.+.+-|...+|.         .|..    |+....||.+.+ |++      +. .|.+=|+.|...|++.+.
T Consensus         7 c~i~~al~iig~kW~~~Il~---------~L~~----g~~RF~el~~~l~gIS------~~-~Ls~rLk~L~~~glv~R~   66 (108)
T d1z7ua1           7 TSINLALSTINGKWKLSLMD---------ELFQ----GTKRNGELMRALDGIT------QR-VLTDRLREMEKDGLVHRE   66 (108)
T ss_dssp             HHHHHHHHTTCSTTHHHHHH---------HHHH----SCBCHHHHHHHSTTCC------HH-HHHHHHHHHHHHTSEEEE
T ss_pred             CcHHHHHHHHcCCCHHHHHH---------HHHc----CCCCHHHHHHHCcCCC------hh-HHHHHHHHHHHCCcceee
Confidence            45666777777777766554         3444    588999999998 797      77 899999999999999964


Q ss_pred             eeCCC---cceecchhchHhh
Q 018405           91 FVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        91 ~~~~~---~~y~~t~~~~~l~  108 (356)
                      ..+..   -.|.+|+.|..|.
T Consensus        67 ~~~~~p~~veY~LT~~G~~L~   87 (108)
T d1z7ua1          67 SFNELPPRVEYTLTPEGYALY   87 (108)
T ss_dssp             EECCSSCEEEEEECHHHHHHH
T ss_pred             ccCCCcceehhhhchhHHHHH
Confidence            32211   2499999997555

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=93.65  E-value=0.026  Score=51.95  Aligned_cols=112  Identities=16%  Similarity=0.121  Sum_probs=66.6

Q ss_pred             HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC----CC--------------CeEEEccc-hHHHHhCCCC----
Q 018405          179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY----PR--------------IKGINYDL-PYVIKNAPSY----  235 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~----p~--------------~~~~~~D~-~~~~~~a~~~----  235 (356)
                      .++.-+++.+. .....+|+|-.||+|.++....+..    ..              ....++|. +...+.++..    
T Consensus       151 ~Iv~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~  229 (524)
T d2ar0a1         151 PLIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH  229 (524)
T ss_dssp             HHHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred             chhHhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence            34455555555 4566799999999999998765532    11              14677775 5554443210    


Q ss_pred             -------CCceEEEccCCC-C---CCCCcEEEecccccCC------------ChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          236 -------LGIEHVGGDFFE-S---VPEADTILMKWVLSSF------------DDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       236 -------~~v~~~~~D~~~-~---~~~~D~i~~~~vlh~~------------~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                             ..-.+..++... +   .+..|+|+++--+-.-            ....-..++.++.+.|+|||++.++-+
T Consensus       230 ~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP  308 (524)
T d2ar0a1         230 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  308 (524)
T ss_dssp             TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence                   122345555554 2   1223888875433110            001124689999999999999888643

>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA4135
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.63  E-value=0.03  Score=41.27  Aligned_cols=64  Identities=11%  Similarity=0.082  Sum_probs=48.4

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      +..++..|...   ++.|..+||+.++++      +. .+.+.++-|+..|+++....+.+   -...+|+.|..+.
T Consensus        32 q~~vL~~l~~~---~~~t~~~la~~~~i~------~~-~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~   98 (136)
T d2fbia1          32 QWRVIRILRQQ---GEMESYQLANQACIL------RP-SMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF   98 (136)
T ss_dssp             HHHHHHHHHHH---CSEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHH
Confidence            34455566665   589999999999997      77 89999999999999997643333   2367787776444

>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator PA3341
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.52  E-value=0.042  Score=40.44  Aligned_cols=61  Identities=16%  Similarity=0.174  Sum_probs=44.9

Q ss_pred             hhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           39 FEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        39 f~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      +-.|...+  ++.|..+||+.++++      +. .+.++++.|+..|++++...+.++   ...+|+.|..+.
T Consensus        34 L~~l~~~~--~~~t~~~la~~~~~~------~~-~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~   97 (137)
T d2fbha1          34 LLHLARHR--DSPTQRELAQSVGVE------GP-TLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI   97 (137)
T ss_dssp             HHHHHHCS--SCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred             HHHHHHcC--CCCcHHHHHHHHCCC------HH-HHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHH
Confidence            44555443  368999999999998      77 899999999999999975433332   466777776443

>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.38  E-value=0.041  Score=40.97  Aligned_cols=61  Identities=8%  Similarity=0.020  Sum_probs=46.5

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      ++..|...   ++.|..+||+.++++      +. .+.+.++-|+..|++++..-+.++   ...+|+.|..+.
T Consensus        34 iL~~i~~~---~~~t~~~la~~l~i~------~~-tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~   97 (144)
T d1lj9a_          34 YLVRVCEN---PGIIQEKIAELIKVD------RT-TAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY   97 (144)
T ss_dssp             HHHHHHHS---TTEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHhC---CCCCHHHHHHHHCcc------Hh-hHHHHHHHHHhhhcccccCCCCCCCccccccCHHHHHHH
Confidence            34446665   479999999999998      77 999999999999999976433333   566777776444

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.32  E-value=0.21  Score=37.96  Aligned_cols=93  Identities=14%  Similarity=-0.059  Sum_probs=59.0

Q ss_pred             CCCCceEEEEcCCcc-HHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-------CCCCC-cEEEeccc
Q 018405          191 FEHVKKLVDVGGGLG-ATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-------SVPEA-DTILMKWV  260 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-------~~~~~-D~i~~~~v  260 (356)
                      .++..+||-+|+|.. ..+..+++.....++++.|. +.-.+.+++.....++..+-..       ..+.+ |+|+-...
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g  109 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG  109 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence            567789999999854 56667777766667888885 6556665554333343322110       01233 76664322


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                              ....++...+.++|||+++++-.
T Consensus       110 --------~~~~~~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         110 --------SQATVDYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             --------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred             --------cchHHHHHHHHHhCCCEEEEEeC
Confidence                    14567888999999999999764

>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtfH
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.30  E-value=0.13  Score=36.39  Aligned_cols=76  Identities=12%  Similarity=0.055  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           13 NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      +....++++.+-|...+|..         |..    |+....||.+.+ |++      +. .|.+=|+.|...|+|++..
T Consensus        13 pv~~~l~~ig~kW~l~Il~~---------L~~----g~~RF~el~~~l~gis------~~-~Ls~rL~~Le~~glv~R~~   72 (114)
T d1yyva1          13 PSREVLKHVTSRWGVLILVA---------LRD----GTHRFSDLRRKMGGVS------EK-MLAQSLQALEQDGFLNRVS   72 (114)
T ss_dssp             THHHHHHHHHSHHHHHHHHH---------GGG----CCEEHHHHHHHSTTCC------HH-HHHHHHHHHHHHTCEEEEE
T ss_pred             CHHHHHHHHcCCCHHHHHHH---------Hhc----CCCCHHHHHHHccccc------hh-HHHHHHHHHHHHHHHhhcc
Confidence            45677778878777665543         344    588999999999 797      77 8999999999999999753


Q ss_pred             eCC---CcceecchhchHhh
Q 018405           92 VDG---QRLYSLASVAKYFV  108 (356)
Q Consensus        92 ~~~---~~~y~~t~~~~~l~  108 (356)
                      .+.   .-.|.+|+.|..|.
T Consensus        73 ~~~~p~~veY~LT~~G~~L~   92 (114)
T d1yyva1          73 YPVVPPHVEYSLTPLGEQVS   92 (114)
T ss_dssp             ECSSSCEEEEEECHHHHHHH
T ss_pred             cCCCCchhHhHhhHhHHHHH
Confidence            222   13599999997655

>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Organic hydroperoxide resistance transcriptional regulator OhrR
species: Bacillus subtilis [TaxId: 1423]

Probab=93.29  E-value=0.026  Score=41.76  Aligned_cols=63  Identities=14%  Similarity=0.162  Sum_probs=48.2

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhhh
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFVR  109 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~~  109 (356)
                      .++..|...   ++.|..+||+.++++      +. .+.+.++.|+..|++.+...+.++   ..++|+.|..+..
T Consensus        37 ~vL~~l~~~---~~~t~~~La~~~~i~------~~-~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~  102 (137)
T d1z91a1          37 LALLLLWEH---ETLTVKKMGEQLYLD------SG-TLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE  102 (137)
T ss_dssp             HHHHHHHHH---SEEEHHHHHHTTTCC------HH-HHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred             HHHHHHHcC---CCCCHHHHHHHHCcC------HH-HHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHHH
Confidence            345566554   489999999999998      77 899999999999999976433333   3688888875543

>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Manganese transport regulator MntR
species: Bacillus subtilis [TaxId: 1423]

Probab=93.29  E-value=0.049  Score=33.96  Aligned_cols=35  Identities=11%  Similarity=0.188  Sum_probs=31.5

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      ++.+..+||+.+|++      +. -+...++-|...|+++++
T Consensus        20 ~~v~~~~iA~~L~vs------~~-SVs~mikrL~~~GlV~~~   54 (61)
T d2ev0a1          20 GYARVSDIAEALAVH------PS-SVTKMVQKLDKDEYLIYE   54 (61)
T ss_dssp             SSCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEC-
T ss_pred             CCccHHHHHHHhCCC------ch-hHHHHHHHHHHCCCEEEc
Confidence            589999999999998      77 899999999999999964

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.03  E-value=0.13  Score=39.10  Aligned_cols=99  Identities=21%  Similarity=0.190  Sum_probs=62.2

Q ss_pred             HHHhcCCCCCceEEEEcC-C-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC--------CCCC-
Q 018405          185 LESYKGFEHVKKLVDVGG-G-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES--------VPEA-  252 (356)
Q Consensus       185 ~~~~~~~~~~~~vLDiG~-G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~--------~~~~-  252 (356)
                      ++... .++..+||=+|| | .|..+..+++.....++++.+. +.-.+.+++..--.++..+-.+.        .+.. 
T Consensus        20 l~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~   98 (170)
T d1jvba2          20 VRKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGV   98 (170)
T ss_dssp             HHHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred             HHHhC-CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccc
Confidence            44455 778889999996 3 6677777888776678888884 55555554332112222221111        2333 


Q ss_pred             cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      |+|+-...        ....++.+.+.++|||+++++-..
T Consensus        99 d~vid~~g--------~~~~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2          99 DAVIDLNN--------SEKTLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             EEEEESCC--------CHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             hhhhcccc--------cchHHHhhhhhcccCCEEEEeccc
Confidence            77765432        245667788899999999998654

>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PG0823
species: Porphyromonas gingivalis [TaxId: 837]

Probab=92.85  E-value=0.076  Score=36.91  Aligned_cols=76  Identities=14%  Similarity=0.160  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405           13 NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSF   91 (356)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~   91 (356)
                      +.+..++++.+=|...+|..         |..    |+....||.+.+ |++      +. .|.+=|+.|.+.|+|.+..
T Consensus         9 pv~~~l~ilg~kW~l~Il~~---------L~~----g~~rF~el~~~l~gIs------~~-~Ls~rLkeL~~~glv~r~~   68 (102)
T d2fswa1           9 PVRKSMQIFAGKWTLLIIFQ---------INR----RIIRYGELKRAIPGIS------EK-MLIDELKFLCGKGLIKKKQ   68 (102)
T ss_dssp             HHHHHHHHHTSSSHHHHHHH---------HTT----SCEEHHHHHHHSTTCC------HH-HHHHHHHHHHHTTSEEEEE
T ss_pred             CHHHHHHHHcCCCHHHHHHH---------Hcc----CCCCHHHHHhhCcccc------hh-HHHHHHHHHHHCCceeecc
Confidence            56777788877777665543         333    488999999997 897      77 8899999999999999753


Q ss_pred             eCC---CcceecchhchHhh
Q 018405           92 VDG---QRLYSLASVAKYFV  108 (356)
Q Consensus        92 ~~~---~~~y~~t~~~~~l~  108 (356)
                      ..+   .-.|++|+.|..|.
T Consensus        69 ~~~~p~~veY~LT~~G~~L~   88 (102)
T d2fswa1          69 YPEVPPRVEYSLTPLGEKVL   88 (102)
T ss_dssp             ECSSSCEEEEEECHHHHTTH
T ss_pred             cCCCCCeehhhhhHhHHHHH
Confidence            221   13499999996444

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.84  E-value=0.28  Score=36.95  Aligned_cols=87  Identities=15%  Similarity=0.033  Sum_probs=56.0

Q ss_pred             ceEEEEcCC--ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCChHHHHH
Q 018405          195 KKLVDVGGG--LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLK  271 (356)
Q Consensus       195 ~~vLDiG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~  271 (356)
                      ++|.=||+|  -+.++..|.+  .+.+++++|. ++.++.+.+...+.... +..+...++|+|+++     .|.....+
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~--~g~~V~~~d~~~~~~~~a~~~~~~~~~~-~~~~~~~~~DiIila-----vp~~~~~~   72 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQQSTCEKAVERQLVDEAG-QDLSLLQTAKIIFLC-----TPIQLILP   72 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHTTSCSEEE-SCGGGGTTCSEEEEC-----SCHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHH--CCCEEEEEECCchHHHHHHHhhccceee-eeccccccccccccc-----CcHhhhhh
Confidence            367778887  3345555655  4567889996 67777665543333222 222233455998874     35677889


Q ss_pred             HHHHHHHhCCCCCEEEEE
Q 018405          272 LLKNCYKALPDGGKLLNV  289 (356)
Q Consensus       272 ~L~~~~~~L~pgG~lii~  289 (356)
                      +++++...++|+..++-.
T Consensus        73 vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          73 TLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             HHHHHGGGSCTTCEEEEC
T ss_pred             hhhhhhhhcccccceeec
Confidence            999999999988766543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.74  E-value=0.29  Score=37.43  Aligned_cols=94  Identities=14%  Similarity=0.005  Sum_probs=62.3

Q ss_pred             CCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC---------CCCC-cEEEec
Q 018405          191 FEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES---------VPEA-DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~---------~~~~-D~i~~~  258 (356)
                      .++..+||=+|||. |.++..+++...-.++++.|. +.-.+.+++..-..++...-.+.         .+.+ |+++-.
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~  105 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  105 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence            67888999999996 888888998887667888885 55556655543222222111111         1223 777543


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCC-CEEEEEecc
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDG-GKLLNVNVT  292 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pg-G~lii~e~~  292 (356)
                      --        ....+..+.+.++|| |+++++-..
T Consensus       106 ~G--------~~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2         106 AG--------TAQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             SC--------CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             cc--------cchHHHHHHHHhhcCCeEEEecCCC
Confidence            21        256788999999996 999997653

>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.094  Score=31.66  Aligned_cols=45  Identities=16%  Similarity=0.220  Sum_probs=35.7

Q ss_pred             CCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405           48 GAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL  100 (356)
Q Consensus        48 ~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~  100 (356)
                      +...|+.+||.+++++      .. .+.|.|..|...|-+..+.. .+-.|++
T Consensus        14 ~~~~tA~~LA~kl~vp------Kk-~iNr~LYsL~~kgkl~k~~g-tPPlWr~   58 (59)
T d2gxba1          14 GKATTAHDLSGKLGTP------KK-EINRVLYSLAKKGKLQKEAG-TPPLWKI   58 (59)
T ss_dssp             TCCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEECS-SSCEEEE
T ss_pred             ccchhHHHHHHHhCCc------HH-HHHHHHHHHHHccchhhcCC-CCCCccc
Confidence            3689999999999996      56 89999999999999996432 2345543

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.67  E-value=0.056  Score=33.56  Aligned_cols=44  Identities=16%  Similarity=0.317  Sum_probs=37.8

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      +..|...|.+.   +..|..+||+++|++      +. .+.+-++.|...|++.
T Consensus         5 D~kIl~~L~~n---~r~s~~~lA~~~gls------~~-~v~~Ri~~L~~~giI~   48 (60)
T d1i1ga1           5 DKIILEILEKD---ARTPFTEIAKKLGIS------ET-AVRKRVKALEEKGIIE   48 (60)
T ss_dssp             HHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeE
Confidence            45567778776   589999999999997      77 8889999999999998

>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.51  E-value=0.059  Score=39.76  Aligned_cols=63  Identities=16%  Similarity=0.134  Sum_probs=45.0

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      .++..|...+  ++.|..+||+.++++      +. .+.+.++.|...|+++....+.++   .+.+|+.|..+.
T Consensus        35 ~~L~~l~~~~--~~~t~~~la~~l~i~------~~-~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~  100 (140)
T d3deua1          35 VTLHNIHQLP--PDQSQIQLAKAIGIE------QP-SLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI  100 (140)
T ss_dssp             HHHHHHHHSC--SSEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred             HHHHHHHHcC--CCccHHHHHHHHCCC------Hh-HHHHHHHHHHhCCCEEecccCCCCCceeeEECHHHHHHH
Confidence            4455565432  369999999999998      77 899999999999999964322222   578888886444

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.51  E-value=0.066  Score=33.19  Aligned_cols=45  Identities=16%  Similarity=0.287  Sum_probs=38.7

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      ++..|...|.+.   +..|..+||+++|++      +. .+.+=++.|...|++.
T Consensus         4 ~D~~Il~~L~~n---~r~s~~eiA~~l~ls------~~-~v~~Ri~~L~~~giI~   48 (60)
T d2cyya1           4 IDKKIIKILQND---GKAPLREISKITGLA------ES-TIHERIRKLRESGVIK   48 (60)
T ss_dssp             HHHHHHHHHHHC---TTCCHHHHHHHHCSC------HH-HHHHHHHHHHHHTSSC
T ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeE
Confidence            355677888886   588999999999997      77 8888899999999998

>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarR
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.43  E-value=0.067  Score=38.11  Aligned_cols=61  Identities=16%  Similarity=0.158  Sum_probs=44.0

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchH
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKY  106 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~  106 (356)
                      ++..|...+ +++.|..+||+.++++      +. .+.++++.|...|++.+...+.++   ...+|+.|..
T Consensus        37 vL~~l~~~~-~~~~t~~ela~~l~~~------~~-~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~  100 (115)
T d1hsja1          37 ILNHILRSE-SNEISSKEIAKCSEFK------PY-YLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKA  100 (115)
T ss_dssp             HHHHHHTCS-CSEEEHHHHHHSSCCC------HH-HHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHH
T ss_pred             HHHHHHccC-CCCcCHHHHHHHHCCC------hh-hHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHH
Confidence            444454321 1579999999999997      77 899999999999999976433332   3556666653

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=92.34  E-value=0.074  Score=33.35  Aligned_cols=44  Identities=25%  Similarity=0.447  Sum_probs=38.3

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      +..|.+.|...   +..|..+||+.+|++      +. -+.+=++-|...|++.
T Consensus         7 D~~IL~~L~~n---~r~s~~~iA~~lgis------~~-tv~~Ri~~L~~~giI~   50 (63)
T d2cfxa1           7 DLNIIEELKKD---SRLSMRELGRKIKLS------PP-SVTERVRQLESFGIIK   50 (63)
T ss_dssp             HHHHHHHHHHC---SCCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCee
Confidence            45677888876   589999999999997      77 8889999999999998

>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcription factor E/IIe-alpha, N-terminal domain
domain: Transcription factor E/IIe-alpha, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.27  E-value=0.1  Score=34.78  Aligned_cols=47  Identities=23%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceee
Q 018405           37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV   92 (356)
Q Consensus        37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~   92 (356)
                      .|++.|-+.+  +..|=++||+++|++      .. .+|+.|..|...|++++..+
T Consensus        22 ~v~~~L~~~~--~evtDe~iA~~tgi~------in-~VRk~Ly~L~~~~L~~y~R~   68 (88)
T d1q1ha_          22 DVLRILLDKG--TEMTDEEIANQLNIK------VN-DVRKKLNLLEEQGFVSYRKT   68 (88)
T ss_dssp             HHHHHHHHHC--SCBCHHHHHHTTTSC------HH-HHHHHHHHHHHHTSCEEEEE
T ss_pred             HHHHHHHhcc--CcCCHHHHHHHhCCc------HH-HHHHHHHHHHhCCceEEEEe
Confidence            3666664321  478999999999997      77 99999999999999987543

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.09  E-value=0.044  Score=47.87  Aligned_cols=92  Identities=13%  Similarity=0.000  Sum_probs=65.7

Q ss_pred             CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---------------------CCceEEEccCCC---
Q 018405          193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---------------------LGIEHVGGDFFE---  247 (356)
Q Consensus       193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~~v~~~~~D~~~---  247 (356)
                      ++.+|||..||+|..+.+.+...+..+++..|. +..++.++++                     ..+.+...|...   
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            468999999999999999988887778889996 7777666532                     123444455433   


Q ss_pred             CCCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405          248 SVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN  290 (356)
Q Consensus       248 ~~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e  290 (356)
                      ...+. |+|.+--    +.  .+..+|..+.++++.||.|.|--
T Consensus       125 ~~~~~fDvIDiDP----fG--s~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         125 ERHRYFHFIDLDP----FG--SPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             HSTTCEEEEEECC----SS--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhcCcCCcccCCC----CC--CcHHHHHHHHHHhccCCEEEEEe
Confidence            12333 8887743    22  24779999999999999998854

>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=92.02  E-value=0.068  Score=33.49  Aligned_cols=44  Identities=11%  Similarity=0.191  Sum_probs=38.1

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH   88 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~   88 (356)
                      +..|...|.+.   +..|..|||+++|++      +. .+.+=++.|...|++.
T Consensus         7 D~~IL~~L~~~---~r~s~~eiA~~l~ls------~~-~v~~Ri~rL~~~GiI~   50 (63)
T d2cg4a1           7 DRGILEALMGN---ARTAYAELAKQFGVS------PE-TIHVRVEKMKQAGIIT   50 (63)
T ss_dssp             HHHHHHHHHHC---TTSCHHHHHHHHTSC------HH-HHHHHHHHHHHHTSEE
T ss_pred             HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeE
Confidence            45577888886   589999999999997      77 8888899999999998

>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Iron-dependent regulator IdeR
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.85  E-value=0.17  Score=31.59  Aligned_cols=35  Identities=9%  Similarity=0.088  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      ++.+..+||+.+|++      +. -+.+.++-|...|++.++
T Consensus        22 ~~v~~~~iA~~L~vs------~~-SVt~mvkrL~~~Glv~~~   56 (63)
T d2isya1          22 VTPLRARIAERLDQS------GP-TVSQTVSRMERDGLLRVA   56 (63)
T ss_dssp             CCCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEC
T ss_pred             CCCcHHHHHHHhCCC------ch-hHHHHHHHHHHCCCEEEc
Confidence            589999999999998      77 899999999999999963

>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Pleiotropic regulator of virulence genes, SarA
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.78  E-value=0.074  Score=37.87  Aligned_cols=61  Identities=11%  Similarity=0.175  Sum_probs=44.7

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchH
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKY  106 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~  106 (356)
                      ++..|...+ +++.|..+||+.++++      +. .+.+.++.|...|++.+...+.+   -...+|+.|..
T Consensus        38 vL~~l~~~~-~~~~t~~~la~~l~~~------~~-tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~  101 (115)
T d2frha1          38 VLTYISENK-EKEYYLKDIINHLNYK------QP-QVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRK  101 (115)
T ss_dssp             HHHHHHHTC-CSEEEHHHHHHHSSSH------HH-HHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHH
T ss_pred             HHHHHHcCC-CCCCCHHHHHHHHCCC------Hh-HHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHH
Confidence            344454432 2568999999999997      77 89999999999999997643333   24667777763

>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: 34L
species: Yaba-like disease virus, YLDV [TaxId: 132475]

Probab=91.75  E-value=0.2  Score=31.52  Aligned_cols=45  Identities=4%  Similarity=0.116  Sum_probs=36.2

Q ss_pred             CCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCccee
Q 018405           48 GAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYS   99 (356)
Q Consensus        48 ~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~   99 (356)
                      ++..|+.+||+++|++      .. .+-|.|..|...|.+..+....+-+|.
T Consensus        22 ~~~~tA~~LAk~Lg~~------Kk-~VNr~LY~L~~~G~v~~~~~tPP~W~~   66 (70)
T d1sfua_          22 NDYTTAISLSNRLKIN------KK-KINQQLYKLQKEDTVKMVPSNPPKWFK   66 (70)
T ss_dssp             TCEECHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEECCSSCEEEE
T ss_pred             CCCchHHHHHHHhCCC------HH-HHHHHHHHHHHCCCeecCCCcCCcccc
Confidence            3689999999999997      56 899999999999999976433334453

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.32  E-value=0.3  Score=36.75  Aligned_cols=95  Identities=12%  Similarity=0.035  Sum_probs=58.9

Q ss_pred             HHhcCCCCCceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC-------CCCC-cEE
Q 018405          186 ESYKGFEHVKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES-------VPEA-DTI  255 (356)
Q Consensus       186 ~~~~~~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~-------~~~~-D~i  255 (356)
                      +... .++..+||=+|+| .|..+..+++.. +.+++++|. +.-++.+++..-..++..+-.+.       .... |+|
T Consensus        21 ~~~~-~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i   98 (166)
T d1llua2          21 KQTN-ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVL   98 (166)
T ss_dssp             HHHT-CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred             HHhC-CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccc
Confidence            3444 6778889999998 566777777776 579999995 66666665543223332211111       1112 333


Q ss_pred             EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          256 LMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       256 ~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      ++...         ...++.+.+.|+|+|+++++-.
T Consensus        99 ~~~~~---------~~~~~~~~~~l~~~G~iv~~G~  125 (166)
T d1llua2          99 VTAVS---------NSAFGQAIGMARRGGTIALVGL  125 (166)
T ss_dssp             ECCSC---------HHHHHHHHTTEEEEEEEEECCC
T ss_pred             ccccc---------chHHHHHHHHhcCCcEEEEEEe
Confidence            33211         3467788899999999999753

>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.29  E-value=0.096  Score=33.55  Aligned_cols=61  Identities=11%  Similarity=0.118  Sum_probs=48.0

Q ss_pred             HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405           34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA  104 (356)
Q Consensus        34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~  104 (356)
                      .+-.|++.|...   |+.++-+||+.+|++     ... -+-+.|..|...|.+.++.. .+..|.++...
T Consensus         6 ~eekI~~~L~~~---g~~~Al~iak~lGl~-----kak-eVN~~LY~L~k~g~v~k~~~-tPP~W~L~~~~   66 (73)
T d1xmka1           6 IKEKICDYLFNV---SDSSALNLAKNIGLT-----KAR-DINAVLIDMERQGDVYRQGT-TPPIWHLTDKK   66 (73)
T ss_dssp             HHHHHHHHHHHT---CCEEHHHHHHHHCGG-----GHH-HHHHHHHHHHHTTSEEEECS-SSCEEEECHHH
T ss_pred             HHHHHHHHHHHc---CCchHHHHHHHhCCC-----cHH-HHhHHHHHHHHCCCeecCCC-CCCceeeecch
Confidence            456788899887   589999999999995     123 58999999999999996532 24678887654

>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Protease production regulatory protein Hpr
species: Bacillus subtilis [TaxId: 1423]

Probab=91.15  E-value=0.074  Score=40.46  Aligned_cols=63  Identities=13%  Similarity=-0.014  Sum_probs=47.1

Q ss_pred             cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405           36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV  108 (356)
Q Consensus        36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~  108 (356)
                      ..++..|...   ++.|+.+||+.++++      +. .+.++++-|...|++++...+.+   -...+|+.|..+.
T Consensus        44 ~~vL~~l~~~---~~~t~~~la~~~~l~------~~-tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~  109 (162)
T d2fxaa1          44 HHILWIAYQL---NGASISEIAKFGVMH------VS-TAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF  109 (162)
T ss_dssp             HHHHHHHHHH---TSEEHHHHHHHTTCC------HH-HHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred             HHHHhhhccC---CCcCHHHHHHHHcCC------ch-hhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHH
Confidence            3356677665   489999999999997      77 89999999999999997532222   2467788886443

>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ReutB4095-like
domain: Putative DNA-binding protein ReutB4095
species: Ralstonia eutropha [TaxId: 106590]

Probab=91.05  E-value=0.24  Score=31.58  Aligned_cols=54  Identities=24%  Similarity=0.260  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceee-CCCcceecchhchHhh
Q 018405           48 GAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV-DGQRLYSLASVAKYFV  108 (356)
Q Consensus        48 ~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~-~~~~~y~~t~~~~~l~  108 (356)
                      +++-|++-|+++.+++      =. .|+|.|-.|.+.|+++..-. ++.|.=++|+.|..+.
T Consensus        22 g~~WSLaklsKra~~P------MS-~LRR~LTqL~~aGl~~t~~~edG~G~A~Lt~~G~~lc   76 (81)
T d2obpa1          22 ATPWSLPKIAKRAQLP------MS-VLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA   76 (81)
T ss_dssp             CCCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred             CCCccHHHHHhhcCCc------HH-HHHHHHHHHhhcCceeeeeccCCcceeeccHHHHHHH
Confidence            4699999999999995      44 89999999999999986432 3447788898887554

>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator DR1159
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.83  E-value=0.051  Score=41.83  Aligned_cols=64  Identities=11%  Similarity=0.113  Sum_probs=43.9

Q ss_pred             chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405           38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV  108 (356)
Q Consensus        38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~  108 (356)
                      ++-.|...++.++.|..+||+.++++      +. .+.+.++-|+..|+|++...+.++   ..++|+.|..+.
T Consensus        67 vL~~L~~~~~~~~lt~~eLa~~l~i~------~~-tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l~  133 (172)
T d2fbka1          67 LLLTLYRSAPPEGLRPTELSALAAIS------GP-STSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV  133 (172)
T ss_dssp             HHHHHHHHCCSSCBCHHHHHHHCSCC------SG-GGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred             HHHHHHhhCCCCCcCHHHHHHHHCcC------Hh-HHHHHHHHHHhCCCeeeeccccchhhHHhhcCHHHHHHH
Confidence            34455443322458999999999997      66 888999999999999975322222   356777776444

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.44  E-value=0.21  Score=37.82  Aligned_cols=94  Identities=18%  Similarity=0.080  Sum_probs=57.1

Q ss_pred             HHhcCCCCCceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-----CCCCC-cEEEe
Q 018405          186 ESYKGFEHVKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-----SVPEA-DTILM  257 (356)
Q Consensus       186 ~~~~~~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-----~~~~~-D~i~~  257 (356)
                      +... .++..+||=+|+| .|.++..+++.. +.+.+++|. ++-.+.+++..--.++  |..+     ....+ |+++-
T Consensus        24 ~~~~-~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i--~~~~~~~~~~~~~~~D~vid   99 (168)
T d1uufa2          24 RHWQ-AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVV--NSRNADEMAAHLKSFDFILN   99 (168)
T ss_dssp             HHTT-CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEE--ETTCHHHHHTTTTCEEEEEE
T ss_pred             HHhC-CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEE--ECchhhHHHHhcCCCceeee
Confidence            4444 7788999999987 577888888876 567777773 4444444332222222  2222     11123 87765


Q ss_pred             cccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      .-.-        ...++.+.+.++|+|+++++-.
T Consensus       100 ~~g~--------~~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         100 TVAA--------PHNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             CCSS--------CCCHHHHHTTEEEEEEEEECCC
T ss_pred             eeec--------chhHHHHHHHHhcCCEEEEecc
Confidence            4221        2335567789999999999864

>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.40  E-value=0.17  Score=36.44  Aligned_cols=65  Identities=15%  Similarity=0.150  Sum_probs=46.3

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHh
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYF  107 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l  107 (356)
                      +..++..|...+ +++.|+.+||+.++++      +. .+.+.++-|...|++++...+.+.   ...+|+.|..+
T Consensus        35 q~~vL~~l~~~~-~~~~~~~~ia~~l~~~------~~-~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~  102 (125)
T d1p4xa2          35 EFTILAIITSQN-KNIVLLKDLIETIHHK------YP-QTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDH  102 (125)
T ss_dssp             HHHHHHHHHTTT-TCCEEHHHHHHHSSSC------HH-HHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHH
T ss_pred             HHHHHHHHHHcc-CCCccHHHHHHHHCCC------cc-hHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHHH
Confidence            334555664422 1478999999999997      77 899999999999999975433332   35667777533

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.36  E-value=0.47  Score=39.53  Aligned_cols=57  Identities=14%  Similarity=0.128  Sum_probs=41.1

Q ss_pred             CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCC------CCCceEEEccCCC
Q 018405          191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPS------YLGIEHVGGDFFE  247 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~  247 (356)
                      ..+..+|||+++|.|.-+..++... +..+++.+|. +.-++..++      ..++.+...|...
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~  156 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA  156 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhh
Confidence            5677899999999999888888754 4567888885 444443322      2567888888765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.26  E-value=0.35  Score=36.85  Aligned_cols=95  Identities=18%  Similarity=0.106  Sum_probs=60.4

Q ss_pred             CCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEcc---CCC-----CCCCC-cEEEecc
Q 018405          191 FEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGD---FFE-----SVPEA-DTILMKW  259 (356)
Q Consensus       191 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D---~~~-----~~~~~-D~i~~~~  259 (356)
                      .++..+||=+|||. |..+..+++...-.+++++|. +.-.+.+++..-..++.-.   ..+     ....+ |+|+-.-
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~  104 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG  104 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence            77888999999986 788888888765457888885 6556655543222222111   111     01233 8765532


Q ss_pred             cccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405          260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI  293 (356)
Q Consensus       260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~  293 (356)
                      --        ...++.+.+.++|+|+++++-...
T Consensus       105 g~--------~~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2         105 GG--------SETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             SC--------TTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             CC--------HHHHHHHHHHHhcCCEEEEEeecC
Confidence            21        345677888999999999976543

>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Transcriptional regulator YydK
species: Bacillus subtilis [TaxId: 1423]

Probab=90.11  E-value=0.24  Score=32.33  Aligned_cols=43  Identities=21%  Similarity=0.350  Sum_probs=35.7

Q ss_pred             CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405           49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL  100 (356)
Q Consensus        49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~  100 (356)
                      ..+ |..+||+.++++      .. -+++-|+.|.+.|++...  .+.|.|-.
T Consensus        20 ~~LPse~~La~~~~vS------r~-tvr~Al~~L~~~Gli~~~--~g~G~~V~   63 (78)
T d3bwga1          20 DKLPVLETLMAQFEVS------KS-TITKSLELLEQKGAIFQV--RGSGIFVR   63 (78)
T ss_dssp             CBCCCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred             CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCcEEEE--cCcEEEEc
Confidence            466 899999999998      77 899999999999999964  34466653

>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.78  E-value=0.17  Score=36.42  Aligned_cols=63  Identities=14%  Similarity=0.154  Sum_probs=45.7

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhch
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAK  105 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~  105 (356)
                      ++.++..|...+ +++.|+.|||+.++++      +. .+.+.++.|...|+|.+..-..+.   ...+|+.|+
T Consensus        36 q~~iL~~l~~~~-~~~~t~~eia~~~~~~------~~-~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~  101 (125)
T d1p4xa1          36 EFILLTYLFHQQ-ENTLPFKKIVSDLCYK------QS-DLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQR  101 (125)
T ss_dssp             HHHHHHHHHSCS-CSEEEHHHHHHHSSSC------GG-GTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHH
T ss_pred             HHHHHHHHHHhc-cCCcCHHHHHHHhCCC------cc-hHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHH
Confidence            444555565432 2578999999999997      67 899999999999999976433222   356677665

>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Putative transcriptional regulator RHA1 ro03477
species: Rhodococcus sp. RHA1 [TaxId: 101510]

Probab=89.65  E-value=0.18  Score=32.11  Aligned_cols=43  Identities=14%  Similarity=0.261  Sum_probs=35.4

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL  100 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~  100 (356)
                      ..++..+||+.+|++      .. -+++-|+.|.+.|+++..  .+.|.|-.
T Consensus        24 ~~l~~~~La~~~~vS------r~-tvr~Al~~L~~~Gli~~~--~~~G~~V~   66 (69)
T d2hs5a1          24 ARLSEPDICAALDVS------RN-TVREAFQILIEDRLVAHE--LNRGVFVR   66 (69)
T ss_dssp             CEECHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred             CccCHHHHHHHHCCC------HH-HHHHHHHHHHHCCcEEEE--cCCEEEec
Confidence            467899999999997      77 899999999999999964  33466643

>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Dlm-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.41  E-value=0.15  Score=29.99  Aligned_cols=54  Identities=17%  Similarity=0.351  Sum_probs=43.1

Q ss_pred             hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405           35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL  100 (356)
Q Consensus        35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~  100 (356)
                      +-.|++.|.+.|  +|.-+.+|++.+.++      .. .+.++|..|-..+=++.   .+.+.|++
T Consensus         3 EQkILQVL~dag--spvk~~ql~k~cqVp------kk-~lNqVL~rlkke~kVsl---~~patW~l   56 (57)
T d1j75a_           3 EQKILQVLSDDG--GPVKIGQLVKKCQVP------KK-TLNQVLYRLKKEDRVSS---PEPATWSI   56 (57)
T ss_dssp             HHHHHHHHHHHC--SCEEHHHHHHHHCSC------HH-HHHHHHHHHHHTTSEEE---EETTEEEE
T ss_pred             HHHHHHHHHhcC--CchHHHHHHHHHCCC------HH-HHHHHHHHHHhcccccc---CCCccccC
Confidence            456788888865  799999999999996      55 89999999999888874   33566664

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.00  E-value=1.6  Score=32.81  Aligned_cols=96  Identities=11%  Similarity=-0.057  Sum_probs=59.9

Q ss_pred             CCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEE---ccCCC------CCCCC-cEEEec
Q 018405          191 FEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVG---GDFFE------SVPEA-DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~---~D~~~------~~~~~-D~i~~~  258 (356)
                      .++..+||=+|||. |..+..+++.....++++.|. +.-++.+++..-..++.   .|...      ..+.+ |+++-.
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~  104 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  104 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence            77889999999984 456677777777678999995 66666666553333332   22110      01233 776653


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCC-CCEEEEEecccC
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPD-GGKLLNVNVTIP  294 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~p-gG~lii~e~~~~  294 (356)
                      -.        ....+......+++ +|+++++-...+
T Consensus       105 ~g--------~~~~~~~~~~~~~~~~G~~v~vG~~~~  133 (174)
T d1p0fa2         105 AG--------RIETMMNALQSTYCGSGVTVVLGLASP  133 (174)
T ss_dssp             SC--------CHHHHHHHHHTBCTTTCEEEECCCCCT
T ss_pred             CC--------CchHHHHHHHHHHHhcCceEEEEEecC
Confidence            22        24566667777765 599999775443

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.77  E-value=0.38  Score=36.30  Aligned_cols=97  Identities=15%  Similarity=0.098  Sum_probs=58.4

Q ss_pred             HHhcCCCCCceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEc-cCCC---CCCCC-cEEEec
Q 018405          186 ESYKGFEHVKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGG-DFFE---SVPEA-DTILMK  258 (356)
Q Consensus       186 ~~~~~~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~-D~~~---~~~~~-D~i~~~  258 (356)
                      +... .++..+||-+|+| .|.++..+++.. +.+++++|. +.-++.+++..--.++.. +-.+   ...+. |+++-.
T Consensus        21 ~~~~-~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~   98 (168)
T d1piwa2          21 VRNG-CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC   98 (168)
T ss_dssp             HHTT-CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred             HHhC-cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE
Confidence            3344 7788999999998 677777777764 678888884 555555554321122221 1111   12233 876653


Q ss_pred             -ccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          259 -WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       259 -~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                       ...+..       .+..+.+.++|+|+++++..
T Consensus        99 ~~~~~~~-------~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          99 ASSLTDI-------DFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             CSCSTTC-------CTTTGGGGEEEEEEEEECCC
T ss_pred             ecCCccc-------hHHHHHHHhhccceEEEecc
Confidence             222211       13457788999999999864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.51  E-value=1.4  Score=31.46  Aligned_cols=85  Identities=13%  Similarity=0.074  Sum_probs=51.3

Q ss_pred             ceEEEEcCCccHHHHHHHHhC--CCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC-------CCCCcEEEecccccCC
Q 018405          195 KKLVDVGGGLGATLNMIISKY--PRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES-------VPEADTILMKWVLSSF  264 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~-------~~~~D~i~~~~vlh~~  264 (356)
                      ++|+=+|+  |..+..+++.+  .+..++++|. ++.++.+....++.++.||..++       ..++|.+++.     .
T Consensus         1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t   73 (132)
T d1lssa_           1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----T   73 (132)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----C
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----C
Confidence            35777776  55555555443  3567889985 77776654434678999998873       2234877763     2


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEE
Q 018405          265 DDEQSLKLLKNCYKALPDGGKL  286 (356)
Q Consensus       265 ~~~~~~~~L~~~~~~L~pgG~l  286 (356)
                      ++++.-.+.....+.+.+.-.+
T Consensus        74 ~~d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          74 GKEEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             SCHHHHHHHHHHHHHTTCCCEE
T ss_pred             CcHHHHHHHHHHHHHcCCceEE
Confidence            2233334445555667776443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.34  E-value=0.7  Score=34.51  Aligned_cols=91  Identities=15%  Similarity=0.117  Sum_probs=54.5

Q ss_pred             CCCCceEEEEcCCccH-HHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC--------CCCCcEEEeccc
Q 018405          191 FEHVKKLVDVGGGLGA-TLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES--------VPEADTILMKWV  260 (356)
Q Consensus       191 ~~~~~~vLDiG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~--------~~~~D~i~~~~v  260 (356)
                      .++..+||=+|+|.-. .+..+++. .+.++++.+. +.-++.+++. ..+.+...-.++        .+..|.++...+
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~-Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  102 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKEL-GADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV  102 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHT-TCSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred             CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhc-CcceecccccchhhhhcccccCCCceEEeecC
Confidence            6788899999998654 44555554 5668888884 6666655543 222222111111        112233333221


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                              ....+..+.++|+|+|+++++..
T Consensus       103 --------~~~~~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2         103 --------SKPAFQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             --------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred             --------CHHHHHHHHHHhccCCceEeccc
Confidence                    14567889999999999999764

>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Fatty acid responsive transcription factor FadR, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.31  E-value=0.27  Score=31.74  Aligned_cols=42  Identities=21%  Similarity=0.187  Sum_probs=34.8

Q ss_pred             CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCccee
Q 018405           49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYS   99 (356)
Q Consensus        49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~   99 (356)
                      ..+ |..+||+.++++      +. -+++-++.|+..|+|...  .+.|.|-
T Consensus        25 ~~LPs~~eLa~~~~vS------r~-tvr~Al~~L~~~G~i~~~--~g~G~~V   67 (74)
T d1hw1a1          25 TILPAERELSELIGVT------RT-TLREVLQRLARDGWLTIQ--HGKPTKV   67 (74)
T ss_dssp             SBCCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTEEEEE
T ss_pred             CCCccHHHHHHHHCCC------HH-HHHHHHHHHHHCCcEEEE--eCceEEE
Confidence            467 899999999998      77 899999999999999964  3346554

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=0.77  Score=34.65  Aligned_cols=89  Identities=18%  Similarity=0.139  Sum_probs=58.3

Q ss_pred             CCCCceEEEEcC--CccHHHHHHHHhCCCCeEEEcc-chHHHHhCCCCCCceEEEccCCC-C---------CCCC-cEEE
Q 018405          191 FEHVKKLVDVGG--GLGATLNMIISKYPRIKGINYD-LPYVIKNAPSYLGIEHVGGDFFE-S---------VPEA-DTIL  256 (356)
Q Consensus       191 ~~~~~~vLDiG~--G~G~~~~~l~~~~p~~~~~~~D-~~~~~~~a~~~~~v~~~~~D~~~-~---------~~~~-D~i~  256 (356)
                      +++..+||-+|+  |.|..+..+++.. ++++++.+ .++-.+.+++..--.++  |..+ +         .+.+ |+|+
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi--~~~~~~~~~~i~~~t~~~g~d~v~  102 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVF--NHREVNYIDKIKKYVGEKGIDIII  102 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEE--ETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred             CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCccccc--ccccccHHHHhhhhhccCCceEEe
Confidence            678889999995  5778888888876 56777766 46555555544222222  2222 1         1233 8777


Q ss_pred             ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      ....         ...++.+.+.|+|+|+++.+..
T Consensus       103 d~~g---------~~~~~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2         103 EMLA---------NVNLSKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             ESCH---------HHHHHHHHHHEEEEEEEEECCC
T ss_pred             eccc---------HHHHHHHHhccCCCCEEEEEec
Confidence            6421         2467888899999999999753

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=87.74  E-value=0.53  Score=40.52  Aligned_cols=59  Identities=10%  Similarity=0.168  Sum_probs=36.3

Q ss_pred             CchHHHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-------CCCeEEEccc
Q 018405          162 DSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-------PRIKGINYDL  225 (356)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------p~~~~~~~D~  225 (356)
                      .|+....|.+..+.+    ...+...+. .++..+|||+|+|+|.++..++..+       ..+++..++.
T Consensus        53 sp~is~~Fg~~ia~~----~~~~~~~~~-~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~  118 (365)
T d1zkda1          53 SPEISQMFGELLGLW----SASVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI  118 (365)
T ss_dssp             HHHHCHHHHHHHHHH----HHHHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred             CCchHHHHHHHHHHH----HHHHHHHhC-CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEecc
Confidence            344445555544321    122333343 4456789999999999998887654       2346778885

>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: LexA repressor, N-terminal DNA-binding domain
domain: LexA repressor, N-terminal DNA-binding domain
species: Escherichia coli [TaxId: 562]

Probab=87.36  E-value=0.35  Score=30.84  Aligned_cols=36  Identities=14%  Similarity=0.207  Sum_probs=31.2

Q ss_pred             CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405           49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS   90 (356)
Q Consensus        49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~   90 (356)
                      -|-|+.|||+.+|+.  +   +. .+.+.|..|...|+|.+.
T Consensus        23 ~~Ps~rei~~~~g~~--S---~s-tv~~~l~~Le~kG~I~r~   58 (71)
T d1jhfa1          23 MPPTRAEIAQRLGFR--S---PN-AAEEHLKALARKGVIEIV   58 (71)
T ss_dssp             SCCCHHHHHHHTTCS--S---HH-HHHHHHHHHHHTTSEEEC
T ss_pred             CCCCHHHHHHHcCCC--C---HH-HHHHHHHHHHHCcCeecC
Confidence            378999999999994  1   66 899999999999999953

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.88  E-value=2.2  Score=31.81  Aligned_cols=94  Identities=16%  Similarity=0.082  Sum_probs=58.1

Q ss_pred             CCCCceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCC-CC--------CCCC-cEEEec
Q 018405          191 FEHVKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFF-ES--------VPEA-DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~-~~--------~~~~-D~i~~~  258 (356)
                      .++..+||=+||| .|.++..+++..-..++++.|. +.-.+.+++..--.++..+-. ++        .+.+ |+|+-.
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~  105 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC  105 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence            7788899999887 4567777888776677888885 555555544322222221111 11        2233 877764


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT  292 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~  292 (356)
                      --        ....++.+...+++||.++++-..
T Consensus       106 ~G--------~~~~~~~~~~~~~~g~~~~~v~~~  131 (176)
T d2fzwa2         106 IG--------NVKVMRAALEACHKGWGVSVVVGV  131 (176)
T ss_dssp             SC--------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             CC--------CHHHHHHHHHhhcCCceeEEEEee
Confidence            22        146778889999999877665433

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.53  E-value=2.3  Score=32.00  Aligned_cols=95  Identities=16%  Similarity=0.037  Sum_probs=57.3

Q ss_pred             CCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEE-ccCCCC--------CCCC-cEEEec
Q 018405          191 FEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVG-GDFFES--------VPEA-DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-~D~~~~--------~~~~-D~i~~~  258 (356)
                      .++..+|+=+|+|. |.++..+++.+...+++++|. ++-++.+++..-..++. .|....        .+.+ |+++-.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~  106 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV  106 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence            67888999999984 557777777776678999995 77777776543222221 111111        1233 766553


Q ss_pred             ccccCCChHHHHHHHHHHHHhC-CCCCEEEEEeccc
Q 018405          259 WVLSSFDDEQSLKLLKNCYKAL-PDGGKLLNVNVTI  293 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L-~pgG~lii~e~~~  293 (356)
                      ..        ....++.....+ +++|+++++-...
T Consensus       107 ~g--------~~~~~~~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2         107 IG--------HLETMIDALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             SC--------CHHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred             CC--------chHHHHHHHHHhhcCCeEEEEEEccc
Confidence            22        134444555555 4559999976543

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.99  E-value=0.56  Score=35.69  Aligned_cols=91  Identities=11%  Similarity=0.057  Sum_probs=55.6

Q ss_pred             CCCCceEEEEcC--CccHHHHHHHHhCCCCeEEEcc-chHHHHhCCCCCCceEEEc---cCCCC-----CCCC-cEEEec
Q 018405          191 FEHVKKLVDVGG--GLGATLNMIISKYPRIKGINYD-LPYVIKNAPSYLGIEHVGG---DFFES-----VPEA-DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~--G~G~~~~~l~~~~p~~~~~~~D-~~~~~~~a~~~~~v~~~~~---D~~~~-----~~~~-D~i~~~  258 (356)
                      +++..+||=.|+  |.|.++..+++.. +.++++.. .++-.+.+++..--.++..   |+.+.     .+.+ |+|+..
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~  101 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNS  101 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEec
Confidence            677789998774  5778888888775 45665554 4555555554422222221   11110     1234 888864


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV  291 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~  291 (356)
                      -.         .+.++.+.+.|+|+|+++.+..
T Consensus       102 ~g---------~~~~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_         102 LA---------GEAIQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             CC---------THHHHHHHHTEEEEEEEEECSC
T ss_pred             cc---------chHHHHHHHHhcCCCEEEEEcc
Confidence            32         1356677889999999999753

>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Probable transcription regulator BT4300, C-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=84.06  E-value=0.44  Score=30.50  Aligned_cols=41  Identities=7%  Similarity=0.127  Sum_probs=34.4

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      +.|-+|||..+|++      +. .+.|.|..|...|+++.   . .+.+...
T Consensus        27 ~lt~~elA~~lg~s------r~-tvsr~l~~l~~~g~I~~---~-~~~i~I~   67 (73)
T d1zyba1          27 KVKMDDLARCLDDT------RL-NISKTLNELQDNGLIEL---H-RKEILIP   67 (73)
T ss_dssp             ECCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSCEE---E-TTEEEES
T ss_pred             ecCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEe---c-CCEEEEc
Confidence            67999999999997      77 99999999999999994   2 3555543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=83.84  E-value=5.3  Score=29.63  Aligned_cols=92  Identities=15%  Similarity=0.054  Sum_probs=56.1

Q ss_pred             CCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEc-cCCCC--------CCCC-cEEEec
Q 018405          191 FEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGG-DFFES--------VPEA-DTILMK  258 (356)
Q Consensus       191 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~-D~~~~--------~~~~-D~i~~~  258 (356)
                      .++..+||=+|+|. |..+..+++.....++++.|. +.-.+.+++......+.. +-.+.        .+.+ |+|+-.
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~  105 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV  105 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence            77888999998864 457777788887788999985 655555554433333221 11111        1234 887765


Q ss_pred             ccccCCChHHHHHHHHHHHHhCCCC-CEEEEEe
Q 018405          259 WVLSSFDDEQSLKLLKNCYKALPDG-GKLLNVN  290 (356)
Q Consensus       259 ~vlh~~~~~~~~~~L~~~~~~L~pg-G~lii~e  290 (356)
                      ...        ...++.+...++++ |.+++..
T Consensus       106 ~G~--------~~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2         106 IGR--------LDTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             SCC--------HHHHHHHHHHBCTTTCEEEECS
T ss_pred             CCc--------hhHHHHHHHHHhcCCcceEEec
Confidence            432        34566677788887 4555543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=82.17  E-value=0.9  Score=34.29  Aligned_cols=89  Identities=18%  Similarity=0.175  Sum_probs=51.1

Q ss_pred             ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEE------EccCCCCCCCCcEEEeccc
Q 018405          195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHV------GGDFFESVPEADTILMKWV  260 (356)
Q Consensus       195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~------~~D~~~~~~~~D~i~~~~v  260 (356)
                      ++|.=||+|.-..+....-.--+..++++|. +..++..+..       +.....      ..|..+..+++|+|++.- 
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v-   80 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV-   80 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS-
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE-
Confidence            5678899996554333222223568888885 5555544321       111111      112111134459888752 


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                          +......+++++...++++..+++
T Consensus        81 ----~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          81 ----PAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             ----CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             ----chhHHHHHHHHhhhccCCCCEEEE
Confidence                334578999999999999876554

>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Catabolite gene activator protein (CAP), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.13  E-value=0.54  Score=29.60  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC   89 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~   89 (356)
                      |.|-+|||..+|++      +. -+.|.|+.|...|+++.
T Consensus        29 ~lt~~~lA~~~G~s------Re-tvsr~L~~l~~~glI~~   61 (69)
T d1i5za1          29 KITRQEIGQIVGCS------RE-TVGRILKMLEDQNLISA   61 (69)
T ss_dssp             ECCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred             CCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE
Confidence            68999999999997      77 89999999999999994

>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: CO-sensing protein CooA, C-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=81.55  E-value=1.1  Score=29.05  Aligned_cols=42  Identities=19%  Similarity=0.280  Sum_probs=34.8

Q ss_pred             CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405           50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA  101 (356)
Q Consensus        50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t  101 (356)
                      |.|-.|||..+|++      +. -+.|.|..|...|+++.   .+.+.+...
T Consensus        30 ~~t~~eiA~~lG~s------re-tvsr~l~~l~~~g~I~~---~~~~~i~I~   71 (80)
T d1ft9a1          30 DFTVEEIANLIGSS------RQ-TTSTALNSLIKEGYISR---QGRGHYTIP   71 (80)
T ss_dssp             CCCHHHHHHHHCSC------HH-HHHHHHHHHHHTTSSEE---CSTTCEECS
T ss_pred             CCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE---CCCCeEEEC
Confidence            78999999999997      77 89999999999999993   333555543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=81.09  E-value=1.8  Score=30.61  Aligned_cols=81  Identities=12%  Similarity=0.162  Sum_probs=50.7

Q ss_pred             CCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC-------CCCCcEEEecccccCCChHHHHHHH
Q 018405          202 GGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES-------VPEADTILMKWVLSSFDDEQSLKLL  273 (356)
Q Consensus       202 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~-------~~~~D~i~~~~vlh~~~~~~~~~~L  273 (356)
                      ||.|..+..+++.+.+-.++++|. +...+.... .++.++.||..++       ..+++.+++..  .  +|+....+.
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~--~--~d~~n~~~~   80 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVNL--E--SDSETIHCI   80 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH-TTCEEEESCTTSHHHHHHTTCTTCSEEEECC--S--SHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh-cCccccccccCCHHHHHHhhhhcCcEEEEec--c--chhhhHHHH
Confidence            456788888888887767777774 555554432 4789999998873       33456666532  1  234444444


Q ss_pred             HHHHHhCCCCCEEEE
Q 018405          274 KNCYKALPDGGKLLN  288 (356)
Q Consensus       274 ~~~~~~L~pgG~lii  288 (356)
                      ..+ +.+.|..+++.
T Consensus        81 ~~~-r~~~~~~~iia   94 (129)
T d2fy8a1          81 LGI-RKIDESVRIIA   94 (129)
T ss_dssp             HHH-HHHCSSSCEEE
T ss_pred             HHH-HHHCCCceEEE
Confidence            444 45677776655

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.36  E-value=1.5  Score=33.25  Aligned_cols=96  Identities=10%  Similarity=-0.031  Sum_probs=54.0

Q ss_pred             CCCCceEEEEcC--CccHHHHHHHHhCCCCeEEEcc-chHHHHhCCCCCCceEE--EccCCCC----CCCC-cEEEeccc
Q 018405          191 FEHVKKLVDVGG--GLGATLNMIISKYPRIKGINYD-LPYVIKNAPSYLGIEHV--GGDFFES----VPEA-DTILMKWV  260 (356)
Q Consensus       191 ~~~~~~vLDiG~--G~G~~~~~l~~~~p~~~~~~~D-~~~~~~~a~~~~~v~~~--~~D~~~~----~~~~-D~i~~~~v  260 (356)
                      ..+..+||-.|+  |.|.++.++++.. +.+++... .++-.+.+++..--..+  ..+..+.    .+.. |+|+=.-.
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg  107 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG  107 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC
Confidence            445678998884  5778999999886 55655554 23333333322111111  1111111    2233 76654322


Q ss_pred             ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCC
Q 018405          261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV  296 (356)
Q Consensus       261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~  296 (356)
                               -..+.+..+.|+|||+++++-......
T Consensus       108 ---------g~~~~~~l~~l~~~Griv~~G~~~g~~  134 (176)
T d1xa0a2         108 ---------GRTLATVLSRMRYGGAVAVSGLTGGAE  134 (176)
T ss_dssp             ---------TTTHHHHHHTEEEEEEEEECSCCSSSC
T ss_pred             ---------chhHHHHHHHhCCCceEEEeecccCcc
Confidence                     124667888999999999988775544

>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: AraC type transcriptional activator
domain: MarA
species: Escherichia coli [TaxId: 562]

Probab=80.29  E-value=1.2  Score=26.19  Aligned_cols=40  Identities=13%  Similarity=0.133  Sum_probs=29.8

Q ss_pred             hhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCc
Q 018405           39 FEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNA   86 (356)
Q Consensus        39 f~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~   86 (356)
                      .+.|.++. ..+.|+++||+.+|++      +. .+.|+.+.......
T Consensus         9 ~~yI~~~~-~~~~tl~~lA~~~~~s------~~-~l~r~Fk~~~g~tp   48 (54)
T d1bl0a1           9 LDWIEDNL-ESPLSLEKVSERSGYS------KW-HLQRMFKKETGHSL   48 (54)
T ss_dssp             HHHHHTTT-TSCCCCHHHHHHSSSC------HH-HHHHHHHHHHSSCH
T ss_pred             HHHHHhcc-CCCCCHHHHHHHHCcC------HH-HHHHHHHHHHCcCH
Confidence            34454433 2589999999999998      88 89998887765543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=80.07  E-value=3.7  Score=28.93  Aligned_cols=85  Identities=14%  Similarity=0.098  Sum_probs=47.7

Q ss_pred             eEEEEcCCccHHHHHHHHhC--CCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC-------CCCCcEEEecccccCCC
Q 018405          196 KLVDVGGGLGATLNMIISKY--PRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES-------VPEADTILMKWVLSSFD  265 (356)
Q Consensus       196 ~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~-------~~~~D~i~~~~vlh~~~  265 (356)
                      +++=+|+|  .++..+++.+  -+..++++|. ++.++.++.. ....+.+|..++       ..++|.+++...    +
T Consensus         2 ~~iIiG~G--~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~----~   74 (134)
T d2hmva1           2 QFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVAIG----A   74 (134)
T ss_dssp             CEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-CSEEEECCTTCTTHHHHHTGGGCSEEEECCC----S
T ss_pred             EEEEECCC--HHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-CCcceeeecccchhhhccCCccccEEEEEcC----c
Confidence            45666665  4444444433  3557888885 8888887654 456778887763       223476665422    2


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEE
Q 018405          266 DEQSLKLLKNCYKALPDGGKLLN  288 (356)
Q Consensus       266 ~~~~~~~L~~~~~~L~pgG~lii  288 (356)
                      ++....+...+++. .|..+++.
T Consensus        75 ~~~~~~~~~~~~~~-~~~~~iia   96 (134)
T d2hmva1          75 NIQASTLTTLLLKE-LDIPNIWV   96 (134)
T ss_dssp             CHHHHHHHHHHHHH-TTCSEEEE
T ss_pred             hHHhHHHHHHHHHH-cCCCcEEe
Confidence            23334444444444 45556655