Citrus Sinensis ID: 018406

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
Protein Sequence
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQLWN
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHcccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHcEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHcHHHHHcccccccccccccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHHHcccccccccccEEEEcccccHccccccccccccccEHHcHHEEEcccccc
Coil and Loop (DISEMBL)
mgsreikspeslqetpatssshqrkKLSVYFIESDNrrmalgrgytggttpvnvhgkpiadlsktggWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMkvfmpnqdncdRISQllgscepaksWQMLYLYTVLYITgfgaagirpcvssfgadqfdersKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMlffigtplyrhrlpggsplTRVAQVLVAAFRKRHaafssseliglyevpgkhsaikgsgkiahtddfslcepadvwtrqlwn
Flexible Loop (DISEMBL)
mgsreikspeslqetpatssshqrkkLSVYFIESDNRRMALGRgytggttpvnvhgkpiadlsktGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKiahtddfslcepadvwtrqlwn
Low Complexity Region (SEG)
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQLWN
Disordered region (IsUnstruct)
***************************SVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQL**
Disordered Region (DISOPRED)
*************************************************TPVNVHGKPIA****TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN**************KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE******THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGL******************TDDFSLCEPADVWTR****
Disordered Region (DISEMBL)
************************KKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQLWN
Disordered Region (DISPRO)
*********************************************TGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKH****GSGKIAHTDDFSLCEPADVWTR****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQLWN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	356	2.2.26 [Sep-21-2011]
Q9LYR6	624	Probable peptide/nitrate	yes	no	0.991	0.565	0.807	1e-169
Q9M390	570	Peptide transporter PTR1	no	no	0.808	0.505	0.439	1e-66
P46032	585	Peptide transporter PTR2	no	no	0.823	0.500	0.417	4e-62
Q93Z20	590	Probable peptide/nitrate	no	no	0.867	0.523	0.400	2e-61
Q9LFB8	570	Peptide transporter PTR5	no	no	0.814	0.508	0.411	3e-60
Q84WG0	545	Probable peptide/nitrate	no	no	0.696	0.455	0.410	2e-54
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.867	0.530	0.349	2e-48
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.853	0.518	0.356	5e-48
P0CI03	575	Putative peptide/nitrate	no	no	0.769	0.476	0.375	2e-47
Q8VZR7	583	Probable peptide/nitrate	no	no	0.848	0.518	0.343	8e-47

>sp|Q9LYR6|PTR49_ARATH Probable peptide/nitrate transporter At5g13400 OS=Arabidopsis thaliana GN=At5g13400 PE=2 SV=1

 Score =  595 bits (1535), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 285/353 (80%), Positives = 316/353 (89%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQ 353
           VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF   + A +  ++
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKE 353

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  254 bits (648), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 131/298 (43%), Positives = 181/298 (60%), Gaps = 10/298 (3%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           V++H  P A+  KTG W A  FI GNE  ER+AY+G+  N+V ++   +++  A ++N V
Sbjct: 13  VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNV 71

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
            N+ G    + ++G F+ADAYLGRYWTIA F  IY++G+T +TL A++    P   N D 
Sbjct: 72  TNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNAD- 130

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                 +C P  S Q    +  LY+   G  GI+PCVSSFGADQFDE  ++ K     FF
Sbjct: 131 ------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFF 183

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY S+ VGA++A T++V+IQM  GWG  FG   +AM I+   FF G+  YR + PGGS
Sbjct: 184 NWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGS 243

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADV 349
           PLTR+ QV+VAAFRK        + + L+E     S IKGS K+ HTD+    + A V
Sbjct: 244 PLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFFDKAAV 300

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  238 bits (608), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 126/302 (41%), Positives = 178/302 (58%), Gaps = 9/302 (2%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           V+ +G P     KTG W A  FI GNE  ER+AY+G++ N++T++   +H+    ++  V
Sbjct: 30  VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
             + G    + ++G  LADAY GRYWTIA F+ IY  G++ +TL A++    P +  C  
Sbjct: 89  TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
           I     S  PA   Q    +  LY+   G  GI+PCVSSFGADQFD+     +     FF
Sbjct: 145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY S+ +GA+V+ +L+V+IQ   GWG  FG   + MG++   FF GTPLYR + PGGS
Sbjct: 202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWT 351
           P+TR++QV+VA+FRK          + LYE   K+SAI GS KI HTDD    + A V +
Sbjct: 262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAVIS 320

Query: 352 RQ 353
            +
Sbjct: 321 EE 322

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/317 (40%), Positives = 182/317 (57%), Gaps = 8/317 (2%)

Query: 33  ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
           E +N    L      G+  ++++G P +   KTG W A  FI GNE  ER+AY+G++ N+
Sbjct: 24  EVNNHLTGLSSTAEDGS--IDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80

Query: 93  VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
           +T+    +H+S   +++ V  + G    + ++G  +AD+Y GRYWTIA F+ IY  G+  
Sbjct: 81  ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140

Query: 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
           +TL A++ V  P              C PA + Q    +T LY+   G  GI+PCVSSFG
Sbjct: 141 LTLSASLPVLKPAA----CAGVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196

Query: 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
           ADQFD+     +     FFN+FY S+ +G+ ++ TL+V++Q   GWG  F    + MG+S
Sbjct: 197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256

Query: 273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
              FFIGTPLYR + PGGSP+TRV QVLVAA+RK        ++  LYE   K+S I GS
Sbjct: 257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNL-PEDISFLYETREKNSMIAGS 315

Query: 333 GKIAHTDDFSLCEPADV 349
            KI HTD +   + A V
Sbjct: 316 RKIQHTDGYKFLDKAAV 332

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  232 bits (592), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/301 (41%), Positives = 178/301 (59%), Gaps = 11/301 (3%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           +++H KP A+ +KTG W A  FI G E  ER+AY+G+S N++ ++   M+     +S +V
Sbjct: 14  LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSV 72

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
           +N+ G   A+ ++G F+ADAYLGRYWTIA F  IY+AG+T +T+ A++    P    C  
Sbjct: 73  SNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT---CS- 128

Query: 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                G    A + Q    +  LY+   G  GI+PCVSSFGADQFD+  +  K     FF
Sbjct: 129 -----GETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFF 183

Query: 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
           N+FY  + VGA++A +++V+IQM  GWG   G   +AM I+ + FF G+  YR + PGGS
Sbjct: 184 NWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGS 243

Query: 292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWT 351
           PLTR+ QV+VA+ RK        E + LYE     S+I GS K+ HT   +  + A V T
Sbjct: 244 PLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFFDKAAVET 302

Query: 352 R 352
            
Sbjct: 303 E 303

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  213 bits (542), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/258 (41%), Positives = 156/258 (60%), Gaps = 10/258 (3%)

Query: 52  VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
           +++HG P      TG W A  FIF NE  ER+AY+G++ N++T+    +H++   ++  V
Sbjct: 31  IDIHGNPPLK-QTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89

Query: 112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
             + G    + ++G  +ADAY GRYWTIA F+ IY  G+  +TL A++    P       
Sbjct: 90  MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKP------- 142

Query: 172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
            ++ +GS C PA   Q   L++ LY+   G  GI+PCVSSFGADQFD+     +     F
Sbjct: 143 -AECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201

Query: 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
           FN+FY ++ +GA V+ T++V+IQ  +GW   F    + MG++ M FF GTPLYR + P G
Sbjct: 202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261

Query: 291 SPLTRVAQVLVAAFRKRH 308
           SP+T V QVLVAA+RK +
Sbjct: 262 SPITSVCQVLVAAYRKSN 279

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 169/318 (53%), Gaps = 9/318 (2%)

Query: 41  LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
           +G  YT   T V++ G P+   S  G W A  F+   E+ ERMAY+G+S N+  +M   +
Sbjct: 6   VGDDYTKDGT-VDLQGNPVRR-SIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63

Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
           H+    SSN V N++G S  + +LG ++ DA LGRY T  I   IY +G+  +TL  T+ 
Sbjct: 64  HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123

Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
              P + +   +     +CE A   Q+   +  LY    G  G +P +S+ GADQFD   
Sbjct: 124 GIKPPECSTTNVE----NCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179

Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
              KT    FFN++  S+  G + A T++VY+Q   GW   +G   + + IS  +F +GT
Sbjct: 180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239

Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
           P YRH+LP GSP T++A+V+VA+FRK +A   + ++   +E+P      KG+  I  T  
Sbjct: 240 PFYRHKLPTGSPFTKMARVIVASFRKANAPM-THDITSFHELPSLEYERKGAFPIHPTPS 298

Query: 341 FSLCEPADVW--TRQLWN 356
               + A +   T   WN
Sbjct: 299 LRFLDRASLKTGTNHKWN 316

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  191 bits (486), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 165/311 (53%), Gaps = 7/311 (2%)

Query: 41  LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
           +G  YT   T V++ G  +   S+TG W A  F+   E+ ERMAY+G+S N+V +M   +
Sbjct: 6   VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63

Query: 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
           H+    SSN V N++G S  + +LG ++ADA+ GRY T  I + IYL G+  +TL  ++ 
Sbjct: 64  HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123

Query: 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
              P + +   +     +CE A   Q+   +  LY    G  G +P +S+ GADQFDE  
Sbjct: 124 GLKPPKCSTANVE----NCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179

Query: 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
              K H   FFN++  S+  G   A T++VY+Q   GW   +G   + +  S  +F +GT
Sbjct: 180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239

Query: 281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
            LYRH+LP GSP T++A+V+VA+ RK     SS      YE+P    A K +  I  T  
Sbjct: 240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDS-TRFYELPPMEYASKRAFPIHSTSS 298

Query: 341 FSLCEPADVWT 351
                 A + T
Sbjct: 299 LRFLNRASLKT 309

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/288 (37%), Positives = 164/288 (56%), Gaps = 14/288 (4%)

Query: 63  SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASS 122
           ++TG W AALFI   E +ER++YFGL+ N+V ++  ++++    +   VN + G++    
Sbjct: 37  ARTGAWRAALFIIAIEFSERLSYFGLATNLVVYLTTILNQDLKMAIRNVNYWSGVTTLMP 96

Query: 123 VLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182
           +LGGF+ADAYLGRY T+ + TTIYL GL    +  TM  F+P    C +        EP 
Sbjct: 97  LLGGFIADAYLGRYATVLVATTIYLMGL----VLLTMSWFIPGLKPCHQEV----CVEPR 148

Query: 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242
           K+ ++ + +  +Y+   G  G +P + SFGADQFD+   + +     FFN++ +S+  G 
Sbjct: 149 KAHEVAF-FIAIYLISIGTGGHKPSLESFGADQFDDDHVEERKMKMSFFNWWNVSLCAGI 207

Query: 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVA 302
           + A T V YI+   GWG A   L + M IS ++FFIG P YR+R P GSPLT + QV VA
Sbjct: 208 LTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIGKPFYRYRTPSGSPLTPILQVFVA 267

Query: 303 AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGK-IAHTDDFSLCEPADV 349
           A  KR+  + S   + L+EV         SG+ + HT+     + A +
Sbjct: 268 AIAKRNLPYPSDPSL-LHEVSKTEFT---SGRLLCHTEHLKFLDKAAI 311

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZR7|PTR30_ARATH Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2

 Score =  187 bits (476), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 168/314 (53%), Gaps = 12/314 (3%)

Query: 39  MALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY 98
           M   + YT   T V++ G+P+   SKTG W A  F+ G E  ERMA++G++ N+V ++  
Sbjct: 1   MEAAKVYTQDGT-VDLQGRPVLA-SKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTK 58

Query: 99  VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158
            +H+    S   VNN+ G    + + G ++AD+Y+GR+WT    + IY+ G+  +T+  T
Sbjct: 59  RLHEDTISSVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVLGMILLTMAVT 118

Query: 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218
           +K   P  +N        G C  A S Q+ + Y  LY    GA G +P +S+FGADQFD 
Sbjct: 119 VKSLRPTCEN--------GVCNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGADQFDS 170

Query: 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278
            S + K     FFN++  S  +GA+ A   +VYIQ   GWG  +G   + + +S ++F+I
Sbjct: 171 YSIEEKKQKVSFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYI 230

Query: 279 GTPLYRHRLPGGSPLTR-VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH 337
           GTP YRH++     L + + QV +AAF+ R        L  LYE+   +    G  ++ H
Sbjct: 231 GTPFYRHKVIKTDNLAKDLVQVPIAAFKNRKLQCPDDHL-ELYELDSHYYKSNGKHQVHH 289

Query: 338 TDDFSLCEPADVWT 351
           T  F   + A + T
Sbjct: 290 TPVFRFLDKAAIKT 303

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
224053581	638	predicted protein [Populus trichocarpa]	0.991	0.553	0.831	1e-175
296085541	606	unnamed protein product [Vitis vinifera]	0.991	0.582	0.801	1e-170
225425292	640	PREDICTED: probable peptide/nitrate tran	0.991	0.551	0.801	1e-170
147771745	612	hypothetical protein VITISV_040927 [Viti	0.957	0.557	0.826	1e-169
357501519	638	Peptide transporter-like protein [Medica	0.985	0.550	0.802	1e-168
15240621	624	putative peptide/nitrate transporter [Ar	0.991	0.565	0.807	1e-168
297811451	625	proton-dependent oligopeptide transport	0.991	0.564	0.810	1e-167
449468910	637	PREDICTED: probable peptide/nitrate tran	0.991	0.554	0.785	1e-166
356569101	631	PREDICTED: probable peptide/nitrate tran	0.991	0.559	0.784	1e-163
147866216	626	hypothetical protein VITISV_008303 [Viti	0.971	0.552	0.773	1e-160

>gi|224053581|ref|XP_002297883.1| predicted protein [Populus trichocarpa] gi|222845141|gb|EEE82688.1| predicted protein [Populus trichocarpa]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/357 (83%), Positives = 323/357 (90%), Gaps = 4/357 (1%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           MGS EIKSPE L ETPAT    S+    KKL +YF+ESDNRRMA GRGYTGGTTPV++HG
Sbjct: 1   MGSGEIKSPEGLPETPATYDGVSNPIHSKKLGIYFLESDNRRMAFGRGYTGGTTPVDIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFY+MH+ F  SSNAVNNFLG
Sbjct: 61  KPIPDLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYIMHRPFTSSSNAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQ SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +FMP+Q  CD++S LL
Sbjct: 121 ISQVSSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFMPDQGQCDQLSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           G+CEPAKSWQMLYL TVLY+TGFGAAGIRPCVSSFGADQFDER ++YK+HLDRFFNFFYL
Sbjct: 181 GNCEPAKSWQMLYLNTVLYVTGFGAAGIRPCVSSFGADQFDERGENYKSHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFTLVVYIQM+HGWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTLVVYIQMKHGWGSAFGSLAIAMGMSNMLFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQ 353
           AQVLVAAF+KR A+FSSSELIGLYEVPGK SAIKGSGKIAHTDDF   + A +  ++
Sbjct: 301 AQVLVAAFQKRKASFSSSELIGLYEVPGKRSAIKGSGKIAHTDDFRCLDKAALQLKE 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085541|emb|CBI29273.3| unnamed protein product [Vitis vinifera]

 Score =  604 bits (1557), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 286/357 (80%), Positives = 316/357 (88%), Gaps = 4/357 (1%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQ 353
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDF   + A +  ++
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKE 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425292|ref|XP_002272176.1| PREDICTED: probable peptide/nitrate transporter At5g13400 [Vitis vinifera]

 Score =  603 bits (1556), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 286/357 (80%), Positives = 316/357 (88%), Gaps = 4/357 (1%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQ 353
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDF   + A +  ++
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKE 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771745|emb|CAN78165.1| hypothetical protein VITISV_040927 [Vitis vinifera]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 285/345 (82%), Positives = 311/345 (90%), Gaps = 4/345 (1%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DLSKTGGW+AA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 120

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 121 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 180

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 181 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 240

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 241 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 300

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDF 341
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDF
Sbjct: 301 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDF 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501519|ref|XP_003621048.1| Peptide transporter-like protein [Medicago truncatula] gi|355496063|gb|AES77266.1| Peptide transporter-like protein [Medicago truncatula]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 284/354 (80%), Positives = 318/354 (89%), Gaps = 3/354 (0%)

Query: 1   MGSREIKSPESLQE-TPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPI 59
           M + EIKSPE+ Q+ TP TS S  RKKL ++FIES++RRMALGRGYT G+TPVN+HGK I
Sbjct: 1   MDTCEIKSPEAPQQGTPCTSMS--RKKLGIFFIESEDRRMALGRGYTRGSTPVNIHGKSI 58

Query: 60  ADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQ 119
            DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ FA SSNAVNNFLGISQ
Sbjct: 59  EDLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFASSSNAVNNFLGISQ 118

Query: 120 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
           ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT+CATM +F+PNQ+NCD++S LLG+C
Sbjct: 119 ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITICATMSIFVPNQENCDQLSLLLGNC 178

Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
           EPAK WQM YLYTVLYIT FGAAGIRPCVSSFGADQFDERSK+YK+HLDRFFN FYLSVT
Sbjct: 179 EPAKPWQMTYLYTVLYITAFGAAGIRPCVSSFGADQFDERSKNYKSHLDRFFNLFYLSVT 238

Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
           +GAI+AFT VVY+QM+ GWGSAFG+LAIAMG+SNMLFFIGTPLYRHRLPGGSPLTRVAQV
Sbjct: 239 IGAIIAFTAVVYVQMKLGWGSAFGSLAIAMGVSNMLFFIGTPLYRHRLPGGSPLTRVAQV 298

Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQ 353
           LVAA+RKR  +F +SE++GLYEVPG+ SAIKGS KIAHTDDF   + A +  +Q
Sbjct: 299 LVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQ 352

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240621|ref|NP_196844.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|75335666|sp|Q9LYR6.1|PTR49_ARATH RecName: Full=Probable peptide/nitrate transporter At5g13400 gi|7543907|emb|CAB87147.1| peptide transporter-like protein [Arabidopsis thaliana] gi|18252225|gb|AAL61945.1| peptide transporter-like protein [Arabidopsis thaliana] gi|22136152|gb|AAM91154.1| peptide transporter-like protein [Arabidopsis thaliana] gi|332004507|gb|AED91890.1| putative peptide/nitrate transporter [Arabidopsis thaliana]

 Score =  595 bits (1535), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 285/353 (80%), Positives = 316/353 (89%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct: 181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQ 353
           VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF   + A +  ++
Sbjct: 301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDFIWLDKAALELKE 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811451|ref|XP_002873609.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata] gi|297319446|gb|EFH49868.1| proton-dependent oligopeptide transport family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 287/354 (81%), Positives = 317/354 (89%), Gaps = 1/354 (0%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct: 1   MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           +LSKTGGWIAALFIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  NLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLA-GLTGITLCATMKVFMPNQDNCDRISQLLGSC 179
           SSVLGGFLADAYLGRYWTIAIFTT+YL   L GITL A++K+F+P+Q NC ++S LLG+C
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTMYLVVSLIGITLGASLKMFVPDQSNCGQLSLLLGNC 180

Query: 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239
           EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT
Sbjct: 181 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVT 240

Query: 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQV 299
           +GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQV
Sbjct: 241 LGAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQV 300

Query: 300 LVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQ 353
           LVAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H+DDF   + A +  ++
Sbjct: 301 LVAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSDDFIWLDKAALQLKE 354

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468910|ref|XP_004152164.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus] gi|449528581|ref|XP_004171282.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Cucumis sativus]

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 282/359 (78%), Positives = 313/359 (87%), Gaps = 6/359 (1%)

Query: 1   MGSREIKSPESLQETPAT------SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNV 54
           MGSREIKS   + ETP        S S QRKKL ++FIESD+RR A GRGYTGGTTPVN+
Sbjct: 1   MGSREIKSLHEVNETPVLGRLDEHSESFQRKKLGMFFIESDDRRTAFGRGYTGGTTPVNI 60

Query: 55  HGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF 114
            GKPIADLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH  F  SS+AVNNF
Sbjct: 61  RGKPIADLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHMPFTTSSDAVNNF 120

Query: 115 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174
           LGISQASSVLGGFLADAYLGRYWTIAIFTTIYL GL GITLCAT+  F+PNQ  CD++S 
Sbjct: 121 LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLGGLVGITLCATISTFVPNQAKCDQLSL 180

Query: 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234
           LLG CEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDE+SKDYK+HLDRFFNFF
Sbjct: 181 LLGRCEPAKPWQMTYLYTVLYLTGFGAAGIRPCVSSFGADQFDEKSKDYKSHLDRFFNFF 240

Query: 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 294
           YLSVTVGAI+AFT VVYIQ++HGWG+AFG+LAIAMG SN++FF+GTPLYRHRLPGGSPLT
Sbjct: 241 YLSVTVGAIIAFTAVVYIQIKHGWGAAFGSLAIAMGFSNVVFFLGTPLYRHRLPGGSPLT 300

Query: 295 RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQ 353
           RVAQVLVAA+RKR+A+FS+SE +GL+EVPGK SAIKGSGKI HTDDF   + A +  ++
Sbjct: 301 RVAQVLVAAYRKRNASFSNSEFVGLFEVPGKQSAIKGSGKILHTDDFRCLDKAALQLKE 359

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569101|ref|XP_003552744.1| PREDICTED: probable peptide/nitrate transporter At5g13400-like [Glycine max]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 277/353 (78%), Positives = 308/353 (87%)

Query: 1   MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
           M S EIKSP    +     +S +RKKL++YFIES++RRMA GRGYT G+TPV++HGK I 
Sbjct: 1   MDSSEIKSPAEGSQQGTPGNSLRRKKLAIYFIESEDRRMAFGRGYTAGSTPVDIHGKSIV 60

Query: 61  DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
           DLSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct: 61  DLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFTSSSNAVNNFLGISQA 120

Query: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
           SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT+  F+PNQ+ CD+ S LLG+CE
Sbjct: 121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATISKFVPNQEECDQFSLLLGNCE 180

Query: 181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
            AK WQM YLYT LYIT FGAAGIRPCVSSFGADQFDERSK+YK HLDRFFN FYLSVT+
Sbjct: 181 AAKPWQMTYLYTALYITAFGAAGIRPCVSSFGADQFDERSKNYKAHLDRFFNIFYLSVTI 240

Query: 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
           GAIVAFT+VVY+QM+ GWGSAFG+LAIAMGISNM+FFIGTPLYRHRLPGGSPLTRVAQVL
Sbjct: 241 GAIVAFTVVVYVQMKFGWGSAFGSLAIAMGISNMVFFIGTPLYRHRLPGGSPLTRVAQVL 300

Query: 301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQ 353
           VAAFRKR+A+F SSE IGLYEVPG+ SAIKGS KI+HTDDF   + A +  ++
Sbjct: 301 VAAFRKRNASFGSSEFIGLYEVPGRQSAIKGSRKISHTDDFRFLDKAALQLKE 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866216|emb|CAN84143.1| hypothetical protein VITISV_008303 [Vitis vinifera]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 276/357 (77%), Positives = 306/357 (85%), Gaps = 11/357 (3%)

Query: 1   MGSREIKSPESLQETPAT----SSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHG 56
           M +REIKSPE   ETPA+    S S +RKKL +YF+ESD+RR A G GY GGTTPVN+HG
Sbjct: 1   MAAREIKSPEVQPETPASLGGNSESFRRKKLGIYFLESDDRRTAFGGGYVGGTTPVNIHG 60

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           KPI DL K        +  GNEMAERMAYFGLSVNMV FMFYVMH+ F+ S+NAVNNFLG
Sbjct: 61  KPIPDLFKD-------WRLGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNNFLG 113

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
           ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM +F+PNQD CD+ S LL
Sbjct: 114 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMNIFVPNQDQCDQFSLLL 173

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
           GSCEPAK WQM YLYTVLY+TGFGAAGIRPCVSSFGADQFDERS+DYKTHLDRFFNFFYL
Sbjct: 174 GSCEPAKPWQMFYLYTVLYVTGFGAAGIRPCVSSFGADQFDERSRDYKTHLDRFFNFFYL 233

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           SVT+GAIVAFT VVYIQ++ GWGSAFG+LAIAMGISN++FFIGTPLYRHRLPGGSPLTRV
Sbjct: 234 SVTIGAIVAFTAVVYIQIKRGWGSAFGSLAIAMGISNLVFFIGTPLYRHRLPGGSPLTRV 293

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTRQ 353
           AQVLVAAFRKR+ +FSS E +GLYE+PGK SAIKGS KI HTDDF   + A +  ++
Sbjct: 294 AQVLVAAFRKRNVSFSSGEYVGLYELPGKQSAIKGSRKIVHTDDFRCLDKAALQLKE 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	356
TAIR|locus:2181655	624	AT5G13400 [Arabidopsis thalian	0.957	0.546	0.832	2.2e-153
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.825	0.515	0.439	6.9e-63
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.870	0.525	0.406	2.4e-60
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.811	0.494	0.422	1e-59
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.828	0.517	0.413	2.2e-57
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.691	0.451	0.417	2.1e-52
TAIR|locus:2043803	577	AT2G26690 [Arabidopsis thalian	0.797	0.492	0.395	6.5e-51
TAIR|locus:2008855	590	NRT1.1 "nitrate transporter 1.	0.806	0.486	0.389	2.5e-49
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.867	0.530	0.352	1.6e-47
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.853	0.518	0.360	2e-47

TAIR|locus:2181655 AT5G13400 [Arabidopsis thaliana (taxid:3702)]

 Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
 Identities = 284/341 (83%), Positives = 311/341 (91%)

Query:     1 MGSREIKSPESLQETPATSSSHQRKKLSVYFIESDNRRMALGRGYTGGTTPVNVHGKPIA 60
             M + EIKSP S+ ETP +SS H RK+LSV+FIESDNRR+ALGRGYTGGTTPVN+HGKPIA
Sbjct:     1 MVASEIKSPVSVPETPGSSSVHHRKQLSVFFIESDNRRLALGRGYTGGTTPVNIHGKPIA 60

Query:    61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQA 120
             +LSKTGGWIAA FIFGNEMAERMAYFGLSVNMV FMFYVMH+ F  SSNAVNNFLGISQA
Sbjct:    61 NLSKTGGWIAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFESSSNAVNNFLGISQA 120

Query:   121 SSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCE 180
             SSVLGGFLADAYLGRYWTIAIFTT+YL GL GITL A++K+F+P+Q NC ++S LLG+CE
Sbjct:   121 SSVLGGFLADAYLGRYWTIAIFTTMYLVGLIGITLGASLKMFVPDQSNCGQLSLLLGNCE 180

Query:   181 PAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240
              AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE+SKDYKTHLDRFFNFFYLSVT+
Sbjct:   181 EAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDEKSKDYKTHLDRFFNFFYLSVTL 240

Query:   241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300
             GAI+AFTLVVY+QME GWG AFG LA+AMGISN LFF GTPLYRHRLPGGSPLTRVAQVL
Sbjct:   241 GAIIAFTLVVYVQMELGWGMAFGTLAVAMGISNALFFAGTPLYRHRLPGGSPLTRVAQVL 300

Query:   301 VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDF 341
             VAAFRKR+AAF+SSE IGLYEVPG  SAI GS KI H++DF
Sbjct:   301 VAAFRKRNAAFTSSEFIGLYEVPGLKSAINGSRKIPHSNDF 341

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 134/305 (43%), Positives = 184/305 (60%)

Query:    45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
             YT   T V++H  P A+  KTG W A  FI GNE  ER+AY+G+  N+V ++   +++  
Sbjct:     7 YTQDGT-VDIHKNP-ANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64

Query:   105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
             A ++N V N+ G    + ++G F+ADAYLGRYWTIA F  IY++G+T +TL A++    P
Sbjct:    65 ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKP 124

Query:   165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
                N D       +C P  S Q    +  LY+   G  GI+PCVSSFGADQFDE  ++ K
Sbjct:   125 GNCNAD-------TCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEK 176

Query:   225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
                  FFN+FY S+ VGA++A T++V+IQM  GWG  FG   +AM I+   FF G+  YR
Sbjct:   177 IKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYR 236

Query:   285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLC 344
              + PGGSPLTR+ QV+VAAFRK        + + L+E     S IKGS K+ HTD+    
Sbjct:   237 LQRPGGSPLTRIFQVIVAAFRKISVKVPEDKSL-LFETADDESNIKGSRKLVHTDNLKFF 295

Query:   345 EPADV 349
             + A V
Sbjct:   296 DKAAV 300

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 129/317 (40%), Positives = 185/317 (58%)

Query:    33 ESDNRRMALGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNM 92
             E  N  +  G   T     ++++G P +   KTG W A  FI GNE  ER+AY+G++ N+
Sbjct:    23 EEVNNHLT-GLSSTAEDGSIDIYGNPPSK-KKTGNWKACPFILGNECCERLAYYGIAKNL 80

Query:    93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152
             +T+    +H+S   +++ V  + G    + ++G  +AD+Y GRYWTIA F+ IY  G+  
Sbjct:    81 ITYYTSELHESNVSAASDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMAL 140

Query:   153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212
             +TL A++ V  P    C  ++  L  C PA + Q    +T LY+   G  GI+PCVSSFG
Sbjct:   141 LTLSASLPVLKPAA--CAGVAAAL--CSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFG 196

Query:   213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272
             ADQFD+     +     FFN+FY S+ +G+ ++ TL+V++Q   GWG  F    + MG+S
Sbjct:   197 ADQFDDTDPRERVRKASFFNWFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVS 256

Query:   273 NMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGS 332
                FFIGTPLYR + PGGSP+TRV QVLVAA+RK        ++  LYE   K+S I GS
Sbjct:   257 IASFFIGTPLYRFQKPGGSPITRVCQVLVAAYRKLKLNLPE-DISFLYETREKNSMIAGS 315

Query:   333 GKIAHTDDFSLCEPADV 349
              KI HTD +   + A V
Sbjct:   316 RKIQHTDGYKFLDKAAV 332

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 126/298 (42%), Positives = 176/298 (59%)

Query:    52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
             V+ +G P     KTG W A  FI GNE  ER+AY+G++ N++T++   +H+    ++  V
Sbjct:    30 VDFNGNPPLK-EKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88

Query:   112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
               + G    + ++G  LADAY GRYWTIA F+ IY  G++ +TL A++    P +  C  
Sbjct:    89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAE--C-- 144

Query:   172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
             I     S  PA   Q    +  LY+   G  GI+PCVSSFGADQFD+     +     FF
Sbjct:   145 IGDFCPSATPA---QYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFF 201

Query:   232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
             N+FY S+ +GA+V+ +L+V+IQ   GWG  FG   + MG++   FF GTPLYR + PGGS
Sbjct:   202 NWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGS 261

Query:   292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADV 349
             P+TR++QV+VA+FRK          + LYE   K+SAI GS KI HTDD    + A V
Sbjct:   262 PITRISQVVVASFRKSSVKVPEDATL-LYETQDKNSAIAGSRKIEHTDDCQYLDKAAV 318

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 127/307 (41%), Positives = 182/307 (59%)

Query:    45 YTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104
             YT   T +++H KP A+ +KTG W A  FI G E  ER+AY+G+S N++ ++   M+   
Sbjct:     8 YTKDGT-LDIHKKP-ANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMEN 65

Query:   105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164
               +S +V+N+ G   A+ ++G F+ADAYLGRYWTIA F  IY+AG+T +T+ A++    P
Sbjct:    66 VSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP 125

Query:   165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224
                 C        +C  A + Q    +  LY+   G  GI+PCVSSFGADQFD+  +  K
Sbjct:   126 T---CSG-----ETCH-ATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEK 176

Query:   225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284
                  FFN+FY  + VGA++A +++V+IQM  GWG   G   +AM I+ + FF G+  YR
Sbjct:   177 ESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYR 236

Query:   285 HRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLC 344
              + PGGSPLTR+ QV+VA+ RK        E + LYE     S+I GS K+ HT   +  
Sbjct:   237 LQKPGGSPLTRMLQVIVASCRKSKVKIPEDESL-LYENQDAESSIIGSRKLEHTKILTFF 295

Query:   345 EPADVWT 351
             + A V T
Sbjct:   296 DKAAVET 302

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 107/256 (41%), Positives = 156/256 (60%)

Query:    52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
             +++HG P    + TG W A  FIF NE  ER+AY+G++ N++T+    +H++   ++  V
Sbjct:    31 IDIHGNPPLKQT-TGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHETNVSAARHV 89

Query:   112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
               + G    + ++G  +ADAY GRYWTIA F+ IY  G+  +TL A++    P +  C  
Sbjct:    90 MTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGLKPAE--C-- 145

Query:   172 ISQLLGS-CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230
                 +GS C PA   Q   L++ LY+   G  GI+PCVSSFGADQFD+     +     F
Sbjct:   146 ----IGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKASF 201

Query:   231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGG 290
             FN+FY ++ +GA V+ T++V+IQ  +GW   F    + MG++ M FF GTPLYR + P G
Sbjct:   202 FNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQKPRG 261

Query:   291 SPLTRVAQVLVAAFRK 306
             SP+T V QVLVAA+RK
Sbjct:   262 SPITSVCQVLVAAYRK 277

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2043803 AT2G26690 [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 118/298 (39%), Positives = 175/298 (58%)

Query:    52 VNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV 111
             V+  G+P AD SKTGGWI A  I G E+ ER++  G++VN+VT++   MH   + S+N V
Sbjct:    13 VDYKGRP-ADKSKTGGWITAALILGIEVVERLSTMGIAVNLVTYLMETMHLPSSTSANIV 71

Query:   112 NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171
              +F+G S    +LGGFLAD++LGR+ TI IF+TI   G TG    AT K+       C  
Sbjct:    72 TDFMGTSFLLCLLGGFLADSFLGRFKTIGIFSTIQALG-TGALAVAT-KLPELRPPTCHH 129

Query:   172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231
                   +C PA ++QM  LY  LY+   G  G++  +S FG+DQFD++    K H+  FF
Sbjct:   130 GE----ACIPATAFQMTILYVSLYLIALGTGGLKSSISGFGSDQFDDKDPKEKAHMAFFF 185

Query:   232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGS 291
             N F+  +++G ++A T++VY+Q E G   A+G   ++M I+ ++F  GT  YR++   GS
Sbjct:   186 NRFFFFISMGTLLAVTVLVYMQDEVGRSWAYGICTVSMAIAIVIFLCGTKRYRYKKSQGS 245

Query:   292 PLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADV 349
             P+ ++ QV+ AAFRKR      S ++ LYE       I+    I HTD F L + A +
Sbjct:   246 PVVQIFQVIAAAFRKRKMELPQS-IVYLYE--DNPEGIR----IEHTDQFHLLDKAAI 296

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2008855 NRT1.1 "nitrate transporter 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 116/298 (38%), Positives = 168/298 (56%)

Query:    56 GKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL 115
             G+P AD SKTGGW +A  I   E  ER+   G+ VN+VT++   MH   A ++N V NFL
Sbjct:    20 GRP-ADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFL 78

Query:   116 GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQL 175
             G S    +LGGF+AD +LGRY TIAIF  I   G++ +TL   +    P + N    S  
Sbjct:    79 GTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSH- 137

Query:   176 LGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235
                CE A   Q+  LY  LY+T  G  G++  VS FG+DQFDE     ++ +  FFN F+
Sbjct:   138 ---CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFF 194

Query:   236 LSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 293
               + VG+++A T++VY+Q + G  WG    A AI + +S  +F  GT  YR +   GSP+
Sbjct:   195 FCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALS--VFLAGTNRYRFKKLIGSPM 252

Query:   294 TRVAQVLVAAFRKRHAAFSS--SELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADV 349
             T+VA V+VAA+R R     +  S L  + ++     ++KG  K+ HT+ F   + A +
Sbjct:   253 TQVAAVIVAAWRNRKLELPADPSYLYDVDDIIAAEGSMKGKQKLPHTEQFRSLDKAAI 310

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010167 "response to nitrate" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0015706 "nitrate transport" evidence=IMP;RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IMP

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 112/318 (35%), Positives = 170/318 (53%)

Query:    41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
             +G  YT   T V++ G P+   S  G W A  F+   E+ ERMAY+G+S N+  +M   +
Sbjct:     6 VGDDYTKDGT-VDLQGNPVRR-SIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKL 63

Query:   101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
             H+    SSN V N++G S  + +LG ++ DA LGRY T  I   IY +G+  +TL  T+ 
Sbjct:    64 HQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIP 123

Query:   161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
                P +  C   +  + +CE A   Q+   +  LY    G  G +P +S+ GADQFD   
Sbjct:   124 GIKPPE--CSTTN--VENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFD 179

Query:   221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
                KT    FFN++  S+  G + A T++VY+Q   GW   +G   + + IS  +F +GT
Sbjct:   180 PKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGT 239

Query:   281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
             P YRH+LP GSP T++A+V+VA+FRK +A  +  ++   +E+P      KG+  I  T  
Sbjct:   240 PFYRHKLPTGSPFTKMARVIVASFRKANAPMTH-DITSFHELPSLEYERKGAFPIHPTPS 298

Query:   341 FSLCEPADV--WTRQLWN 356
                 + A +   T   WN
Sbjct:   299 LRFLDRASLKTGTNHKWN 316

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 112/311 (36%), Positives = 166/311 (53%)

Query:    41 LGRGYTGGTTPVNVHGKPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM 100
             +G  YT   T V++ G  +   S+TG W A  F+   E+ ERMAY+G+S N+V +M   +
Sbjct:     6 VGDDYTKDGT-VDLRGNRVRR-SQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKL 63

Query:   101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160
             H+    SSN V N++G S  + +LG ++ADA+ GRY T  I + IYL G+  +TL  ++ 
Sbjct:    64 HQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLP 123

Query:   161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220
                P +  C   +  + +CE A   Q+   +  LY    G  G +P +S+ GADQFDE  
Sbjct:   124 GLKPPK--CSTAN--VENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFD 179

Query:   221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280
                K H   FFN++  S+  G   A T++VY+Q   GW   +G   + +  S  +F +GT
Sbjct:   180 PKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGT 239

Query:   281 PLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDD 340
              LYRH+LP GSP T++A+V+VA+ RK     SS      YE+P    A K +  I  T  
Sbjct:   240 RLYRHKLPMGSPFTKMARVIVASLRKAREPMSSDST-RFYELPPMEYASKRAFPIHSTSS 298

Query:   341 FSLCEPADVWT 351
                   A + T
Sbjct:   299 LRFLNRASLKT 309

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYR6	PTR49_ARATH	No assigned EC number	0.8073	0.9915	0.5657	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.I.7989.1 hypothetical protein (618 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	356
pfam00854	372	pfam00854, PTR2, POT family	3e-35
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	2e-18
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	7e-16
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	2e-06
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	3e-06
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-04
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	0.004

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  132 bits (333), Expect = 3e-35
 Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 26/206 (12%)

Query: 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLY 195
           + TI + + IY  G   +TL A      P Q                    +   Y  LY
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGAIPPSLSPVQ--------------------VALFYIGLY 40

Query: 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255
           +   G  GI+P VS+FGADQFDE     +   D FF++FY S+  G+++A  +  Y+Q  
Sbjct: 41  LIALGTGGIKPNVSAFGADQFDETQDPRR---DGFFSWFYFSINAGSLIATIITPYLQQN 97

Query: 256 HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLTR-VAQVLVAAFRKRHAAFSS 313
            G+   FG  A+ M ++ ++F +G+  Y+ + P GGSP T  +A ++ AA + R      
Sbjct: 98  VGYPLGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPK 157

Query: 314 SELIGLYEVPGKHSAIKGSGKIAHTD 339
                LY    K++    S    HT 
Sbjct: 158 DS-HWLYWALEKYNKRSISQTKVHTR 182

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 34/210 (16%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLA 129
           IF  E+ ER +Y+G+   ++ +++Y +          ++   + +  +   + ++GG+LA
Sbjct: 26  IFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLA 85

Query: 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189
           D  LG   TI +   +   G   + + +                                
Sbjct: 86  DRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG-------------------------- 119

Query: 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249
           LY  L +   G    +P +SS   + + +         D  F  FY+ + +G+++A  + 
Sbjct: 120 LYIGLALIIVGTGLFKPNISSLLGELYPKD----DPRRDGGFTLFYMGINIGSLIAPIIT 175

Query: 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
             + + +GW   FG  A+ M I  ++F +G
Sbjct: 176 GLLAINYGWHVGFGLAAVGMIIGLVIFLLG 205

Length = 498

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 78.3 bits (193), Expect = 7e-16
 Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 34/227 (14%)

Query: 92  MVTFMF-YVMHKSFADSSNAVN---NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147
           M T +  Y+++    +   A N    F  +   + ++G  +AD++LG++ TI   + +Y+
Sbjct: 6   MKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVYV 65

Query: 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPC 207
            G    +L A   +  P  D       L+G                L +   G  GI+PC
Sbjct: 66  VGHALASLGAVPSLGHPLHD----ALSLVG----------------LALIALGTGGIKPC 105

Query: 208 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL-------VVYIQMEHGWGS 260
           VS+FG DQF+ER    +    RFF+FFY ++  G++ +  +       V     +  +  
Sbjct: 106 VSAFGGDQFEERQLSLRF---RFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPL 162

Query: 261 AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKR 307
           AFG   I M ++ ++F +G+ +Y+ + P G+ +++V + +V A +KR
Sbjct: 163 AFGVPGILMTLALIVFSMGSKMYKKKPPVGNIVSKVMKCIVFALKKR 209

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 39/217 (17%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD--SSNAVNNFLGISQASSVLGGFLADA 131
           +F  E+ ER +Y+G+   +  ++       F+   +      +  +    + +G +  D 
Sbjct: 15  LFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDR 74

Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
             G   T+          L GI L                   +LG    A S   +Y  
Sbjct: 75  VWGTKKTMV---------LGGIVL-------------------MLGHFMLAMS---IYPD 103

Query: 192 TVLYITGF---GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
            + Y  G    G+   +   SS     ++   +      D  F  FY+S+ +G+ ++  L
Sbjct: 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYE---RGDMPRRDGGFTLFYMSINIGSFISPLL 160

Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
              I   +G+   F   A+ M I  + FF G  + R 
Sbjct: 161 AGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRD 197

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 37/211 (17%), Positives = 66/211 (31%), Gaps = 36/211 (17%)

Query: 72  LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA 131
           L +F       +    LS  +       +  S + +   V+ F       S+L G+L+D 
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAED-LGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60

Query: 132 YLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLY 191
           + GR   + +   ++  G   +                            A S  +L + 
Sbjct: 61  F-GRRRVLLLGLLLFALGSLLLAF--------------------------ASSLWLLLVG 93

Query: 192 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251
             L   G G   + P  ++  A+ F  +         R    F     +GA++   L   
Sbjct: 94  RFL--LGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGL 145

Query: 252 IQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282
           +    GW   F  LAI   +  +L      L
Sbjct: 146 LAESLGWRWLFLILAILGLLLALLLLFLLRL 176

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 39/223 (17%), Positives = 69/223 (30%), Gaps = 35/223 (15%)

Query: 83  MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142
           +    L   +  ++   +  S  +    +  F      +  L G L+D + GR   + I 
Sbjct: 10  LGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIG 68

Query: 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA 202
             ++  GL  +   +                          S  +L +  VL   G G  
Sbjct: 69  LLLFALGLLLLLFAS--------------------------SLWLLLVLRVL--QGLGGG 100

Query: 203 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262
            + P  ++  AD F            R          +GA +   L   +    GW +AF
Sbjct: 101 ALFPAAAALIADWFPPE------ERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154

Query: 263 GALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 305
             LAI   ++ +L  +  P          P       LV A++
Sbjct: 155 LILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK 197

Length = 346

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 31/216 (14%)

Query: 70  AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLA 129
           A  ++   ++ E  +++G+   ++ ++   +      +    + +  +   + +LGGFLA
Sbjct: 10  AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLA 69

Query: 130 DAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189
           D  LG            +A + G  L A   V             +LG+ E   S+  LY
Sbjct: 70  DKVLGN----------RMAVMLGALLMAIGHV-------------VLGASEIHPSF--LY 104

Query: 190 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249
           L   + + G+G    +  VS        E  +      D  F+  Y +  VG+I+A    
Sbjct: 105 LSLAIIVCGYGL--FKSNVSCL----LGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIAC 158

Query: 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
            Y Q E+ W   FG  A+ M    ++F  G   + H
Sbjct: 159 GYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTH 194

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	356
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.92
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.92
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.89
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.88
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.88
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.86
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.75
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.75
PRK03545	390	putative arabinose transporter; Provisional	99.75
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.74
PRK10054	395	putative transporter; Provisional	99.74
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.73
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.73
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.72
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.72
PRK12382	392	putative transporter; Provisional	99.71
TIGR00900	365	2A0121 H+ Antiporter protein.	99.71
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.71
TIGR00891	405	2A0112 putative sialic acid transporter.	99.71
PRK10504	471	putative transporter; Provisional	99.71
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.7
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.7
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.7
PRK05122	399	major facilitator superfamily transporter; Provisi	99.69
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.69
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.68
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.68
PRK11663	434	regulatory protein UhpC; Provisional	99.67
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.67
PRK10091	382	MFS transport protein AraJ; Provisional	99.66
PRK10642	490	proline/glycine betaine transporter; Provisional	99.66
PRK12307	426	putative sialic acid transporter; Provisional	99.66
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.66
TIGR00895	398	2A0115 benzoate transport.	99.65
PRK03699	394	putative transporter; Provisional	99.65
PLN00028	476	nitrate transmembrane transporter; Provisional	99.65
PRK03893	496	putative sialic acid transporter; Provisional	99.65
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.65
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.64
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.64
TIGR00893	399	2A0114 d-galactonate transporter.	99.64
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.63
PRK11043	401	putative transporter; Provisional	99.63
PRK09705	393	cynX putative cyanate transporter; Provisional	99.62
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.62
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.62
PRK09874	408	drug efflux system protein MdtG; Provisional	99.61
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.61
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.61
PRK10642	490	proline/glycine betaine transporter; Provisional	99.61
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.6
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.6
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.6
PRK10133	438	L-fucose transporter; Provisional	99.6
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.59
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.59
PRK03633	381	putative MFS family transporter protein; Provision	99.58
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.58
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.58
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.58
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.58
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.57
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.57
TIGR00805	633	oat sodium-independent organic anion transporter.	99.57
PRK10489	417	enterobactin exporter EntS; Provisional	99.57
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.57
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.56
PRK15011	393	sugar efflux transporter B; Provisional	99.55
PRK15075	434	citrate-proton symporter; Provisional	99.55
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.54
PRK09952	438	shikimate transporter; Provisional	99.54
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.54
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.53
PRK15011	393	sugar efflux transporter B; Provisional	99.52
TIGR00898	505	2A0119 cation transport protein.	99.52
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.52
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.51
PRK09952	438	shikimate transporter; Provisional	99.51
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.5
PRK09528	420	lacY galactoside permease; Reviewed	99.5
KOG0254	513	consensus Predicted transporter (major facilitator	99.5
PRK03699	394	putative transporter; Provisional	99.49
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.49
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.49
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.49
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.48
PRK05122	399	major facilitator superfamily transporter; Provisi	99.48
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.48
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.47
PRK11010	491	ampG muropeptide transporter; Validated	99.47
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.47
PRK03893	496	putative sialic acid transporter; Provisional	99.46
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.46
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.45
TIGR00901	356	2A0125 AmpG-related permease.	99.44
TIGR00893	399	2A0114 d-galactonate transporter.	99.44
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.44
PTZ00207	591	hypothetical protein; Provisional	99.43
PRK11902	402	ampG muropeptide transporter; Reviewed	99.43
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.43
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.43
PRK09705	393	cynX putative cyanate transporter; Provisional	99.43
PRK11663	434	regulatory protein UhpC; Provisional	99.42
TIGR00891	405	2A0112 putative sialic acid transporter.	99.42
PRK09874	408	drug efflux system protein MdtG; Provisional	99.41
PRK15075	434	citrate-proton symporter; Provisional	99.41
PRK09528	420	lacY galactoside permease; Reviewed	99.41
PRK03633	381	putative MFS family transporter protein; Provision	99.4
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.4
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.39
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.39
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.39
PRK03545	390	putative arabinose transporter; Provisional	99.38
KOG2532	466	consensus Permease of the major facilitator superf	99.38
PRK10489	417	enterobactin exporter EntS; Provisional	99.38
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.37
PRK12382	392	putative transporter; Provisional	99.37
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.37
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.36
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.36
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.36
KOG0569	485	consensus Permease of the major facilitator superf	99.36
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.35
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.35
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.34
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.33
PRK11010	491	ampG muropeptide transporter; Validated	99.33
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.33
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.33
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.33
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.3
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.3
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.29
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.26
PRK10504	471	putative transporter; Provisional	99.26
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.26
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.25
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.25
PLN00028	476	nitrate transmembrane transporter; Provisional	99.25
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.24
PRK09669	444	putative symporter YagG; Provisional	99.24
PRK10091	382	MFS transport protein AraJ; Provisional	99.23
PRK12307	426	putative sialic acid transporter; Provisional	99.23
KOG2615	451	consensus Permease of the major facilitator superf	99.22
TIGR00900	365	2A0121 H+ Antiporter protein.	99.22
TIGR00895	398	2A0115 benzoate transport.	99.22
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.22
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.21
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.21
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.21
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.2
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.2
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.2
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.19
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.18
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.16
KOG2533	495	consensus Permease of the major facilitator superf	99.16
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.15
PRK10133	438	L-fucose transporter; Provisional	99.15
PRK10429	473	melibiose:sodium symporter; Provisional	99.14
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.14
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.13
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.13
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.12
PRK10054	395	putative transporter; Provisional	99.12
PRK11462	460	putative transporter; Provisional	99.11
PRK09848	448	glucuronide transporter; Provisional	99.11
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.11
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.11
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.09
PRK11902	402	ampG muropeptide transporter; Reviewed	99.09
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.07
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.07
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.06
PF13347	428	MFS_2: MFS/sugar transport protein	99.06
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.05
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.04
PF13347	428	MFS_2: MFS/sugar transport protein	99.04
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.02
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.01
TIGR00898	505	2A0119 cation transport protein.	99.0
PRK09848	448	glucuronide transporter; Provisional	99.0
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.0
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.97
TIGR00901	356	2A0125 AmpG-related permease.	98.97
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.97
PRK10429	473	melibiose:sodium symporter; Provisional	98.94
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.94
KOG2532	466	consensus Permease of the major facilitator superf	98.92
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.91
KOG0569	485	consensus Permease of the major facilitator superf	98.89
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.89
PRK11043	401	putative transporter; Provisional	98.88
PRK09669	444	putative symporter YagG; Provisional	98.88
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.87
COG2211	467	MelB Na+/melibiose symporter and related transport	98.85
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.85
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.85
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.82
PRK11462	460	putative transporter; Provisional	98.78
COG2211	467	MelB Na+/melibiose symporter and related transport	98.76
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.74
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.74
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.71
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.67
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.64
KOG2563	480	consensus Permease of the major facilitator superf	98.63
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.61
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.61
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.58
KOG3626	735	consensus Organic anion transporter [Secondary met	98.54
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.53
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.52
COG0477	338	ProP Permeases of the major facilitator superfamil	98.47
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.47
KOG2533	495	consensus Permease of the major facilitator superf	98.4
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.39
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.38
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.35
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.35
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.33
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.33
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.29
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.26
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.21
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.19
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.14
KOG0254	513	consensus Predicted transporter (major facilitator	98.06
PF12832	77	MFS_1_like: MFS_1 like family	98.0
TIGR00805	633	oat sodium-independent organic anion transporter.	97.95
KOG3762	618	consensus Predicted transporter [General function	97.88
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.88
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.88
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.86
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.83
PTZ00207	591	hypothetical protein; Provisional	97.74
PRK03612	521	spermidine synthase; Provisional	97.64
KOG0637	498	consensus Sucrose transporter and related proteins	97.62
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.6
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.59
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.49
KOG2615	451	consensus Permease of the major facilitator superf	97.46
KOG2563	480	consensus Permease of the major facilitator superf	97.43
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.37
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.34
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.22
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.98
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.93
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.66
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.58
KOG3626	735	consensus Organic anion transporter [Secondary met	96.36
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.28
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.26
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.12
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.09
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.9
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.76
KOG1330	493	consensus Sugar transporter/spinster transmembrane	95.45
KOG3762	618	consensus Predicted transporter [General function	95.3
KOG2325	488	consensus Predicted transporter/transmembrane prot	94.67
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	94.33
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.0
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	93.71
KOG3097	390	consensus Predicted membrane protein [Function unk	93.13
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	92.5
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.03
PRK10263	1355	DNA translocase FtsK; Provisional	91.48
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	90.73
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	90.7
COG3202	509	ATP/ADP translocase [Energy production and convers	89.92
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	88.94
KOG4112	101	consensus Signal peptidase subunit [Intracellular	85.22
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	85.14
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	84.75
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	84.19
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	83.93
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	83.79
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	83.48
KOG0637	498	consensus Sucrose transporter and related proteins	83.43
COG3619	226	Predicted membrane protein [Function unknown]	80.61
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	80.55

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=2.1e-33  Score=281.61  Aligned_cols=292  Identities=42%  Similarity=0.682  Sum_probs=260.2

Q ss_pred             CccccCCCCCcccc---cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 018406           50 TPVNVHGKPIADLS---KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGG  126 (356)
Q Consensus        50 ~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G  126 (356)
                      ...|+++.|. ...   ++++|++..++++.+.++++++|++..+++.|++.++|.+...++..++.|.+...+.+++++
T Consensus        16 ~~~d~~~~~~-~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~   94 (571)
T KOG1237|consen   16 TSVDYRGPLL-GSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGA   94 (571)
T ss_pred             ceeeccCCcc-cccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHH
Confidence            4566666665 554   789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhh
Q 018406          127 FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRP  206 (356)
Q Consensus       127 ~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~  206 (356)
                      +++|.|+||++++.++.+++.+|++++.++...|.+.|.  .| ........|+.++..+...++.++.++++|.|+.++
T Consensus        95 ~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~  171 (571)
T KOG1237|consen   95 FLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF--MC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRP  171 (571)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCC
Confidence            999999999999999999999999999999999988886  54 111123469999999999999999999999999999


Q ss_pred             hhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccccc
Q 018406          207 CVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR  286 (356)
Q Consensus       207 ~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~  286 (356)
                      +..++++|||++..+.++.++.++|+|+|+..++|.+++.++..|++++.||.++|.++.+++++++++|+.+.+.|+++
T Consensus       172 ~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~  251 (571)
T KOG1237|consen  172 CLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYK  251 (571)
T ss_pred             cchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEee
Confidence            99999999999888888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChhHHHHHHHHHHHhccccCCCCcccccccccCCccccccCCccccCCCCceeccccccccC
Q 018406          287 LPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTR  352 (356)
Q Consensus       287 ~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (356)
                      +|.++|...+.+|++++.+||+...+.++++ +.+      .........+++.|||+|||+++++
T Consensus       252 ~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~~~------~~~~~~~~~~t~~f~~l~kaa~~~~  310 (571)
T KOG1237|consen  252 KPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-LYY------DCTDSVAIEGTKPFRFLDKAALKTS  310 (571)
T ss_pred             CCCCCchhHHHHHHHHHHHHHhccCCCcchh-ccc------cccccccccCCcccchhhHhhccCC
Confidence            9999999999999999999999988887555 311      1112223345889999999999865

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.92  E-value=1.5e-24  Score=209.05  Aligned_cols=192  Identities=21%  Similarity=0.396  Sum_probs=178.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~  140 (356)
                      -+++|.++.++.++++|+++|||+...+..|++.+++    ++.+++..+.+.|....++.+++|||++||++|+|+++.
T Consensus        17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            4578899999999999999999999999999999988    999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 018406          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (356)
Q Consensus       141 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~  220 (356)
                      ++.+++.+|.++++.+..                          .....++++++++++|.|+.+++..++++|++|+++
T Consensus        97 lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D  150 (498)
T COG3104          97 LGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD  150 (498)
T ss_pred             HHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCC
Confidence            999999999999887520                          135679999999999999999999999999999888


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccccc
Q 018406          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR  286 (356)
Q Consensus       221 ~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~  286 (356)
                      +    ||.+.++++|++.|+|+.++|++.+++.+++||+.+|.+.++-+.++++.+.++++++...
T Consensus       151 p----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~  212 (498)
T COG3104         151 P----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI  212 (498)
T ss_pred             c----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence            5    5899999999999999999999999999999999999999999999999999998877544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.92  E-value=1.9e-23  Score=208.44  Aligned_cols=190  Identities=17%  Similarity=0.305  Sum_probs=167.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      +++||.++.+++.++++++++|++..+++.|+++++|++..+++++.+.+.+..++.++++|+++||++|||++++++.+
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~   89 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI   89 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999994499999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      ++.++.+++.++..                           ....++++++++++|.|+..++..++++|+||+++    
T Consensus        90 ~~~~g~~~~~~~~~---------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~----  138 (489)
T PRK10207         90 VLAIGYFMTGMSLL---------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD----  138 (489)
T ss_pred             HHHHHHHHHHHhcc---------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc----
Confidence            99999998887531                           13346688999999999999999999999999765    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcccccc
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH  285 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~  285 (356)
                      +||++.+++++++.++|+.++|.+++++.++.||+++|++..+.++++++.+...++.+++
T Consensus       139 ~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~  199 (489)
T PRK10207        139 PRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKD  199 (489)
T ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcc
Confidence            2468889999999999999999999999999999999999877666666666666555543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.89  E-value=1.5e-21  Score=199.58  Aligned_cols=204  Identities=27%  Similarity=0.555  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018406           83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (356)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~  162 (356)
                      ++|||+...+..|+++.+|++.+.+..+...+.....+.++++|+++|+++||+++++++.+++.+|.+++++....+..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999888875421111


Q ss_pred             CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 018406          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~  242 (356)
                      .                    ..+....+++++++++|.|++.+++.++++|||++++   ++++.++++|+|++.|+|+
T Consensus        81 ~--------------------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGS  137 (654)
T TIGR00926        81 H--------------------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGS  137 (654)
T ss_pred             c--------------------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHH
Confidence            1                    1234557788999999999999999999999998643   2358999999999999999


Q ss_pred             HHHHHHHHHHHhhc-------chhHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhHHHHHHHHHHHhcccc
Q 018406          243 IVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA  309 (356)
Q Consensus       243 ~i~p~i~~~i~~~~-------gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~  309 (356)
                      .+++++.+++.+..       +|.++|.+++++++++++++..+++++++.++.+++..++.+++..+++++..
T Consensus       138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~  211 (654)
T TIGR00926       138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFS  211 (654)
T ss_pred             HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhc
Confidence            99999999998553       69999999999999999999999999988888888888888999888876544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.88  E-value=2.4e-21  Score=192.98  Aligned_cols=192  Identities=18%  Similarity=0.252  Sum_probs=167.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~  142 (356)
                      .+++|.++.+++.++++++++|++..+++.|++++  +|++..+++.+.+.+.++..++++++|+++||++|||+++.++
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            35667889999999999999999999999999988  9999999999999999999999999999999944999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChh
Q 018406          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (356)
Q Consensus       143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~  222 (356)
                      .+++.++.++++++.                            +...+++++++.|+|.|+..++..++++|+++++++ 
T Consensus        86 ~~~~~~g~~~~~~~~----------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~-  136 (475)
T TIGR00924        86 GIVLMLGHFMLAMSI----------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM-  136 (475)
T ss_pred             HHHHHHHHHHHHhcc----------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc-
Confidence            999999988877642                            356677889999999999999999999999986542 


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcccccccC
Q 018406          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL  287 (356)
Q Consensus       223 ~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~  287 (356)
                        .+|++.++++|++.++|++++|.+++++.++.||++.|.+.++.+++++++++..++.+++.+
T Consensus       137 --~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~  199 (475)
T TIGR00924       137 --PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIG  199 (475)
T ss_pred             --ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCC
Confidence              147889999999999999999999999999999999999988777777666666666555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.88  E-value=6.3e-21  Score=188.98  Aligned_cols=188  Identities=20%  Similarity=0.336  Sum_probs=162.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (356)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l  145 (356)
                      ++++.++.+++.++++++++|++...++.|+++.+|++..+++.+...+.+...++++++|+++||++|||++++++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999988999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      ..++.+++.....                           ....++++..+.++|.|...++..++++|+||++++    
T Consensus        86 ~~lg~lll~~~~~---------------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----  134 (493)
T PRK15462         86 MAIGHVVLGASEI---------------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----  134 (493)
T ss_pred             HHHHHHHHHHhhc---------------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----
Confidence            9998876653210                           123355566677788888889999999999997642    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccc
Q 018406          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR  284 (356)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~  284 (356)
                      +|.+.++++|...++|++++|.+.+++.+..||+++|.+.++.++++++.++..++.+.
T Consensus       135 ~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~  193 (493)
T PRK15462        135 RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFT  193 (493)
T ss_pred             cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            48889999999999999999999999999999999999988777777777776665543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.86  E-value=3.6e-20  Score=185.56  Aligned_cols=188  Identities=21%  Similarity=0.347  Sum_probs=160.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (356)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l  145 (356)
                      ++++.++.+++.++++++++|++..+++.|+++++|++..+++.+.+.+.+.....++++|+++||++|||++++++.++
T Consensus        18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999888888888888889999999944999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      +.++.+++.++..                           ....+++++++.|+|.|...++..++++|+||+++    .
T Consensus        98 ~~ig~~l~~~~~~---------------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~----~  146 (500)
T PRK09584         98 LAIGYALVAWSGH---------------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD----P  146 (500)
T ss_pred             HHHHHHHHHHhcc---------------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc----h
Confidence            9999887776421                           24567788899999999999999999999998654    2


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccc
Q 018406          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR  284 (356)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~  284 (356)
                      ++++.++++|++.++|+.++|.+.+++.++.||++.|.+.++.++++++.++...+.++
T Consensus       147 ~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~  205 (500)
T PRK09584        147 RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVK  205 (500)
T ss_pred             hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence            46678889999999999999999999999999999999988776666666555544443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1.6e-18  Score=165.70  Aligned_cols=179  Identities=18%  Similarity=0.232  Sum_probs=159.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      +..++.+..+.++.+++++.-|.+...+ .-.++.+|.++...+++.+++.+...+.+|+.|+|+||| -|++++.+|.+
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~  106 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF  106 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence            3456678888999999999999887743 446788999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      ++.++.+..+++.                            ..+++.+.|.+.|+|.+...+..+++++|.|++++    
T Consensus       107 iW~~Av~~~~fs~----------------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~----  154 (493)
T KOG1330|consen  107 IWTLAVFASGFSN----------------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK----  154 (493)
T ss_pred             HHHHHHHHHHHHH----------------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh----
Confidence            9999999988863                            58999999999999999999999999999999988    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHhh
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG  279 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~~~  279 (356)
                        |++.++++|++..+|+++|.++++++.+..+ |||+|+..+++.++..++.++.
T Consensus       155 --Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f  208 (493)
T KOG1330|consen  155 --RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLF  208 (493)
T ss_pred             --hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhh
Confidence              9999999999999999999999999988877 9999999888866655554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.75  E-value=1.2e-16  Score=156.25  Aligned_cols=176  Identities=15%  Similarity=0.084  Sum_probs=148.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      +.+|+.++.+.+..++..+....+.. ...++++++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~   81 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMV   81 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHH
Confidence            44677777777777777776665544 44588999999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      ++.++.+++.++.                            +...++++|++.|++.++..+....+++|.+|+++    
T Consensus        82 ~~~~~~~~~~~~~----------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~----  129 (412)
T TIGR02332        82 LWGIASTATMFAT----------------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF----  129 (412)
T ss_pred             HHHHHHHHHHHhc----------------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH----
Confidence            9999988887652                            47788999999999999988888889999999766    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------hcchhHHHHHHHHHHHHHHHHH
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~------~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                        |+...++++.+..+|..+++.+++++.+      ..|||+.|++.++..++..++.
T Consensus       130 --rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~  185 (412)
T TIGR02332       130 --RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMT  185 (412)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence              8999999999999999999999998864      3589999998776655444333

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.75  E-value=2.8e-16  Score=152.24  Aligned_cols=175  Identities=12%  Similarity=0.081  Sum_probs=144.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (356)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l  145 (356)
                      ++|..++.+.+..++.....+... .+...+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   83 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPV-GLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVL   83 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHH-cchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence            456556666666665444444332 233467789999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      +.++.+.+.++.                            +.+.++++|++.|++.+...+...+++.|.+|+++     
T Consensus        84 ~~~~~~~~~~~~----------------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~-----  130 (390)
T PRK03545         84 FIASHVLSALAW----------------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK-----  130 (390)
T ss_pred             HHHHHHHHHHhc----------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh-----
Confidence            999888777652                            57888999999999998888888999999999776     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                       |++.++++..+.++|..++|.+++++.+..||++.|++.+++.++..+..
T Consensus       131 -r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~  180 (390)
T PRK03545        131 -KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL  180 (390)
T ss_pred             -hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence             89999999999999999999999999998999999998877665554433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.74  E-value=4.5e-16  Score=152.37  Aligned_cols=149  Identities=15%  Similarity=0.095  Sum_probs=128.3

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccccc
Q 018406           95 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ  174 (356)
Q Consensus        95 yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  174 (356)
                      .+.+++|.+....++.++++.++..++.+++|+++||+ |||++++++.+++.++.+++.++.                 
T Consensus        41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~-----------------  102 (413)
T PRK15403         41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT-----------------  102 (413)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC-----------------
Confidence            36678999999999999999999999999999999998 999999999999988888777642                 


Q ss_pred             ccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406          175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (356)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~  254 (356)
                                 +...++++|++.|++.+...+...+++.|.+++++      +++.+++++....+|..++|.+++++.+
T Consensus       103 -----------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~  165 (413)
T PRK15403        103 -----------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMH  165 (413)
T ss_pred             -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       47788999999999988766677788899999766      7888899999999999999999999988


Q ss_pred             hcchhHHHHHHHHHHHHHHHHHHh
Q 018406          255 EHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       255 ~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      ..||++.|++.+++.++.++..+.
T Consensus       166 ~~gw~~~f~~~~~~~~i~~~~~~~  189 (413)
T PRK15403        166 FVHWKVLFAIIAVMGLIAFVGLLL  189 (413)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999887776655544333

>PRK10054 putative transporter; Provisional

Probab=99.74  E-value=5.2e-16  Score=151.04  Aligned_cols=175  Identities=15%  Similarity=0.138  Sum_probs=147.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (356)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l  145 (356)
                      +.+|.++.+++..++...+.+.+..+++.|+++++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++
T Consensus         4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~   82 (395)
T PRK10054          4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA   82 (395)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence            3455678888888898889888888999999999999999999999999999999999999999998 999999999988


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      ..++.+++.+..                            +.+.+++++.+.+.+.+...+...++.+|.+++++     
T Consensus        83 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----  129 (395)
T PRK10054         83 FASGFIAIPLVN----------------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS-----  129 (395)
T ss_pred             HHHHHHHHHHHh----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH-----
Confidence            888777666542                            45666677777777777777888899999998765     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                       |++.+++.+...++|.+++|.+++++.+ .+|+..|++.+++.++.+++.
T Consensus       130 -~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~  178 (395)
T PRK10054        130 -KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI  178 (395)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence             8999999999999999999999998875 689999998777766554433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.73  E-value=5.8e-16  Score=155.10  Aligned_cols=178  Identities=15%  Similarity=0.060  Sum_probs=148.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~  146 (356)
                      +|..++.+.+..++..+....+...++. +.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~-i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~   81 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPT-LSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLF   81 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            4666777777777777777666665554 5678999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (356)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (356)
                      .++.+++..+.                            +.+.++++|++.|+|.++..+.....+.+.+++++     +
T Consensus        82 ~~~~~~~~~a~----------------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~  128 (495)
T PRK14995         82 GLASLAAAFSP----------------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----Q  128 (495)
T ss_pred             HHHHHHHHHcC----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----H
Confidence            99998888752                            58889999999999999988887777878875432     3


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 018406          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (356)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~  279 (356)
                      |+.+++++.....+|..++|.+++++.++.||||.|++...+.++.+++....
T Consensus       129 r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~  181 (495)
T PRK14995        129 RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARY  181 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999998766655554444333

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.73  E-value=9.1e-16  Score=149.27  Aligned_cols=177  Identities=13%  Similarity=0.124  Sum_probs=149.1

Q ss_pred             cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 018406           62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (356)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~  141 (356)
                      ..+|..|+.+..+....++.....|.....++. +.+++|++..+.+..++.+.++..++.++.|+++||+ |||+++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~   90 (394)
T PRK10213         13 AITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVIL   90 (394)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHH
Confidence            344567777677766666666666655555554 5678999999999999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCh
Q 018406          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (356)
Q Consensus       142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~  221 (356)
                      +.+++.++.+++.++.                            +.+.+++.|++.|++.+...+...+++.|.+|+++ 
T Consensus        91 ~~~~~~~~~~~~~~~~----------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~-  141 (394)
T PRK10213         91 FAVLLTLSCLLVSFAN----------------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT-  141 (394)
T ss_pred             HHHHHHHHHHHHHHHC----------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH-
Confidence            9999998887776642                            58889999999999999999999999999999776 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (356)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~  274 (356)
                           |+...+++..+.++|..++|.+++++.+..||++.|++.+++.++.++
T Consensus       142 -----~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        142 -----VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence                 899999999999999999999999999999999999887765554433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.72  E-value=1.7e-15  Score=145.49  Aligned_cols=176  Identities=18%  Similarity=0.186  Sum_probs=144.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~  146 (356)
                      +++.++.+.+..++..++.......+ .++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~   80 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAF-PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF   80 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence            44555555555555555554444433 456788999999999999999999999999999999998 9999999999998


Q ss_pred             HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (356)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (356)
                      .++.+++..+.                            +...+++++++.|++.+...+...+++.|.+|+++      
T Consensus        81 ~~~~~~~~~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------  126 (385)
T TIGR00710        81 ALSSLGLALSN----------------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------  126 (385)
T ss_pred             HHHHHHHHHHc----------------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------
Confidence            88887776542                            46778889999999999999999999999999766      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      |+..+++++....+|..+++.+++++.+..+|++.|++.+++.++..+....
T Consensus       127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999899999998877766555444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.72  E-value=5.3e-16  Score=146.72  Aligned_cols=166  Identities=20%  Similarity=0.258  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (356)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~  154 (356)
                      ++..++..+....+...++.++.+++|.+..+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.+++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            3455556666655555566588899999999999999999999999999999999998 999999999999998855555


Q ss_pred             HHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHH
Q 018406          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (356)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~  234 (356)
                      ++.                            +.+.+++++++.|++.+...+...++++|.+|+++      |+..++++
T Consensus        81 ~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~  126 (352)
T PF07690_consen   81 FAS----------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGIL  126 (352)
T ss_dssp             HHC----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHH
T ss_pred             hhh----------------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccc
Confidence            431                            35589999999999999999999999999999977      99999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406          235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       235 ~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~  275 (356)
                      +....+|..++|.+++++.+..+|++.|++.+++.++..++
T Consensus       127 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  127 SAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            99999999999999999998899999999988887766554

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK12382 putative transporter; Provisional

Probab=99.71  E-value=2e-15  Score=146.22  Aligned_cols=172  Identities=13%  Similarity=0.032  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      .++.+.+..++..+........++.|+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLA   94 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHH
Confidence            345555556666666666666778889999999999999999999999999999999999998 9999999998877766


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      .+...+....+...                    ..+...++++|++.|+|.+...+...+++.|.+|+++      |++
T Consensus        95 ~~~~~~~~~~~~~~--------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~  148 (392)
T PRK12382         95 GLAYLLAAILPVSA--------------------PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGK  148 (392)
T ss_pred             HHHHHhhhccccch--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cch
Confidence            54433221111000                    1257788999999999999888888889999999776      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  268 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~  268 (356)
                      ++++++.+.++|..++|.+++++.+..||++.+.+..+.
T Consensus       149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL  187 (392)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            999999999999999999999998888998876654443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.71  E-value=1.6e-15  Score=144.01  Aligned_cols=172  Identities=17%  Similarity=0.081  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (356)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~  153 (356)
                      ++...++..++.......++.|.. +++.+..+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.+++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence            445555565665555555666654 5899999999999999999999999999999998 99999999998888777766


Q ss_pred             HHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHH
Q 018406          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (356)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~  233 (356)
                      .+....+                       ..+.+.+++++++.|++.+...+...++++|.+|+++      |++.+++
T Consensus        82 ~~~~~~~-----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  132 (365)
T TIGR00900        82 PFVALLG-----------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSL  132 (365)
T ss_pred             HHHHHcC-----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhH
Confidence            6543100                       0147888999999999999999999999999999776      8999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       234 ~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      ++....+|..++|.+++++.+..||++.|++.++..++..++.
T Consensus       133 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~  175 (365)
T TIGR00900       133 SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI  175 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988776655544443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.71  E-value=3e-15  Score=143.12  Aligned_cols=182  Identities=13%  Similarity=0.147  Sum_probs=164.7

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 018406           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (356)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~  143 (356)
                      .+..|..++.+.+..|+....-|....-+ .-+.+++|.+...+++.++.|.++..++.++...++||+ .||++++...
T Consensus         8 ~~~~~~~l~aLa~~~F~igttEfv~~gLL-p~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l   85 (394)
T COG2814           8 RKPMWLALLALALAAFAIGTTEFVPVGLL-PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLL   85 (394)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHhch-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHH
Confidence            34557778888888888888888776654 457789999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (356)
Q Consensus       144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~  223 (356)
                      ++++++.++.+++.                            ++..+.++|++.|+..|.+.+...+..+++.|+++   
T Consensus        86 ~lFi~~n~l~alAp----------------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~---  134 (394)
T COG2814          86 ALFIVSNLLSALAP----------------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK---  134 (394)
T ss_pred             HHHHHHHHHHHHhc----------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc---
Confidence            99999999999873                            58999999999999999999999999999999988   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (356)
Q Consensus       224 ~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~  281 (356)
                         |+++.++.+.+..++..+|.-++.++-+.+|||+.|++.+++.++.++..+...|
T Consensus       135 ---~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         135 ---RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             ---hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence               9999999999999999999999999999999999999998888877777776666

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.71  E-value=2.6e-15  Score=144.91  Aligned_cols=173  Identities=13%  Similarity=0.221  Sum_probs=147.5

Q ss_pred             ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 018406           63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (356)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~  142 (356)
                      ..+.+|+.+....+..++..+..+.+.. ....+++++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~   83 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVAL-VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS   83 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence            4467788888888888888877765544 44567889999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChh
Q 018406          143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD  222 (356)
Q Consensus       143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~  222 (356)
                      .++..++.+++.++.                            +...++++|++.|++.++..+...+++.|.+|+++  
T Consensus        84 ~~~~~~~~~~~~~~~----------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~--  133 (405)
T TIGR00891        84 IVLFSAGTLACGFAP----------------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL--  133 (405)
T ss_pred             HHHHHHHHHHHHHhc----------------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--
Confidence            998888887776542                            47778899999999999999999999999999876  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q 018406          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGI  271 (356)
Q Consensus       223 ~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g--w~~~f~i~~~~~~i  271 (356)
                          |+...++++.+..+|..+++.+.+.+.+..+  |++.|.+.++..++
T Consensus       134 ----~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~  180 (405)
T TIGR00891       134 ----RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF  180 (405)
T ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence                8999999999999999999999998887766  99998875554443

>PRK10504 putative transporter; Provisional

Probab=99.71  E-value=3e-15  Score=148.57  Aligned_cols=178  Identities=12%  Similarity=0.046  Sum_probs=148.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~  147 (356)
                      .+.+|.+.+..++..+..+.+...++.|. +++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            44578888888888888887777777665 57999999999999999999999999999999998 99999999988888


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      ++.+++.++.                            +...++++|++.|+|.++..+...+++.|.+|+++      +
T Consensus        87 ~~~~~~~~~~----------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~  132 (471)
T PRK10504         87 LGSLFCALSG----------------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y  132 (471)
T ss_pred             HHHHHHHHhC----------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H
Confidence            8777665531                            46778889999999999999999999999998665      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~  281 (356)
                      +..+++++...++|..++|.+++++.+..||++.|.+...+..+..++.....+
T Consensus       133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            889999999999999999999999999999999999877665555444443333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.70  E-value=1.8e-15  Score=147.30  Aligned_cols=175  Identities=14%  Similarity=0.080  Sum_probs=136.3

Q ss_pred             hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           68 WIAALFIFGNEMAERM---AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~---~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      .+.++..+...+++..   ....+...++ .+.+++|.+..+.+...+.+.++..++.++.|+++||+ |||++++++.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~   86 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVA   86 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence            3334444444444433   3333333343 35678999999999999999999999999999999998 99999999998


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      +..++.+++..+.                            +.+.+++.|++.|++.+...+...+.+.|.++++.    
T Consensus        87 ~~~~~~~~~~~~~----------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~----  134 (406)
T PRK15402         87 FFILTCLAILLAQ----------------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD----  134 (406)
T ss_pred             HHHHHHHHHHHHc----------------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH----
Confidence            8888877766542                            46778889999999988888888899999998766    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                        +.+..++.+....+|..++|.+++++.+..+|++.|++.+++.++..+....
T Consensus       135 --~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK15402        135 --AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR  186 (406)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence              6777777777778889999999999988889999998877776655544433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.70  E-value=2.5e-15  Score=145.04  Aligned_cols=154  Identities=14%  Similarity=0.115  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 018406           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (356)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~  167 (356)
                      ........+.+++|++..+.+++.+.+.+++.++.++.|+++||+ |||++++.+.+..+.+.+ .....          
T Consensus         9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~----------   76 (368)
T TIGR00903         9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP----------   76 (368)
T ss_pred             HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh----------
Confidence            334455567889999999999999999999999999999999998 999887665555544432 22221          


Q ss_pred             CccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (356)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~  247 (356)
                                       .+...++++|++.|+|.+.. .+.....+|.+|+++      |++..++++.+..+|..+++.
T Consensus        77 -----------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~  132 (368)
T TIGR00903        77 -----------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALA  132 (368)
T ss_pred             -----------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                             14788999999999998864 455556689999765      999999999999999999999


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406          248 LVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       248 i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~  277 (356)
                      +++++.+..|||+.|.+.+++.++..++..
T Consensus       133 ~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~  162 (368)
T TIGR00903       133 AGLKIYTAGGLQLLIIPIAAVAAAGIILVL  162 (368)
T ss_pred             HHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999887776554444333

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.70  E-value=4e-15  Score=145.02  Aligned_cols=168  Identities=15%  Similarity=0.210  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~  151 (356)
                      ++++...++..++.+.+...++.|+++++|++..+.+.+.+++.+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            6777888888899888999999999999999999999999999999999999999999998 999999999999998888


Q ss_pred             HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (356)
                      .+....                            +.+.+++.+++.|++.+...+...+++.|.+|+++      |++..
T Consensus        92 ~~~~~~----------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~  137 (400)
T PRK11646         92 TMAIAH----------------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFF  137 (400)
T ss_pred             HHHHhc----------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHH
Confidence            776542                            46778889999999988888888999999999766      89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       232 ~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~  275 (356)
                      ++++...++|..++|.+++++. ..||++.|++.+++.++..++
T Consensus       138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998 679999998877665544433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.69  E-value=4.6e-15  Score=143.94  Aligned_cols=177  Identities=10%  Similarity=-0.063  Sum_probs=144.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~  146 (356)
                      .++.+..+....++..+........++.|+.+++|.+..+.+++.+++.++..++.++.|+++||+ |||++++++.+++
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC   91 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence            344566677777777777766777788899999999999999999999999999999999999998 9999999999988


Q ss_pred             HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (356)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (356)
                      .++.+.+.++......                    ...+...+++.|++.|+|.+...+....+..|.+++++      
T Consensus        92 ~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------  145 (399)
T PRK05122         92 ALSGLLYLLAGLLAAW--------------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------  145 (399)
T ss_pred             HHHHHHHHHhhhhhcc--------------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------
Confidence            8776665543210000                    00145678899999999999998888899999998776      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG  270 (356)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~  270 (356)
                      |++.++++..+..+|..+++.+++++.+..||++.+.+..++.+
T Consensus       146 r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~  189 (399)
T PRK05122        146 TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL  189 (399)
T ss_pred             hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            88899998888899999999999999999999988776555443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.69  E-value=5e-15  Score=143.56  Aligned_cols=174  Identities=14%  Similarity=0.109  Sum_probs=141.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      ++.||..+.+....++..+..+.....+ .++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~   81 (394)
T PRK11652          4 QRNVNLLFMLVLLVAVGQMAQTIYVPAI-ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMS   81 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHH
Confidence            3457777777777777766665444444 455688999999999999999999999999999999998 99999999998


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      +..++.+++....                            +...+++.|++.|++.+...+....+..|.++.++    
T Consensus        82 ~~~~~~~~~~~~~----------------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----  129 (394)
T PRK11652         82 IFILGTLVALFAH----------------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ----  129 (394)
T ss_pred             HHHHHHHHHHHHc----------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH----
Confidence            8888887766542                            47788899999999988877777788888887655    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~  274 (356)
                        ++...++++.+..+|..++|.+++++.+..||++.|++.+++.++..+
T Consensus       130 --~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652        130 --LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence              788888888899999999999999998888999999887665544433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.68  E-value=4.6e-15  Score=144.17  Aligned_cols=174  Identities=16%  Similarity=0.125  Sum_probs=145.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      +.+|..++......++..+..+...... ..+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence            3667777777777787777776655444 455678999999999999999999999999999999998 99999999998


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      +..++.+++.+..                            +...+++.+++.|++.+...+...++++|.+|+++    
T Consensus        89 ~~~~~~~~~~~~~----------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  136 (406)
T PRK11551         89 LFGLFSLATAQAW----------------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL----  136 (406)
T ss_pred             HHHHHHHHHHHhc----------------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH----
Confidence            8887776665542                            47778889999999999999999999999999776    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~  274 (356)
                        |+..+++++....+|..+++.++.++.+..+|++.|++.+++.++..+
T Consensus       137 --r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (406)
T PRK11551        137 --RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVP  184 (406)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence              899999999999999999999988888888999999887665444433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.68  E-value=4.8e-15  Score=153.71  Aligned_cols=181  Identities=13%  Similarity=0.030  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 018406           89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN  168 (356)
Q Consensus        89 ~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  168 (356)
                      ...+..++.+++|++..+.+++.+++.++..++.+++|+++||+ |||++++++.++..++.+++.++.           
T Consensus       186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~-----------  253 (742)
T TIGR01299       186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ-----------  253 (742)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence            44556677889999999999999999999999999999999998 999999999999888887777652           


Q ss_pred             ccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 018406          169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL  248 (356)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i  248 (356)
                                       +.+.++++|++.|+|.|+..+...++++|.+|.+.      |+..+++++....+|.++++.+
T Consensus       254 -----------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~l  310 (742)
T TIGR01299       254 -----------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAM  310 (742)
T ss_pred             -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                             47788999999999999999999999999999776      8999999888889999999887


Q ss_pred             HHHHHhh-------------cchhHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhHHHHHHHHHHHh
Q 018406          249 VVYIQME-------------HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR  305 (356)
Q Consensus       249 ~~~i~~~-------------~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~  305 (356)
                      +.++...             .+||+.|++.++..++.++++++. |..++--...+...++.+++....+
T Consensus       311 a~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l-PESPrwL~~~gr~~eA~~iL~~i~~  379 (742)
T TIGR01299       311 AWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM-PESPRFFLENGKHDEAWMILKLIHD  379 (742)
T ss_pred             HHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHCCCHHHHHHHHHHHhc
Confidence            7666543             257887777666554444333222 2211111122345566666655443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.67  E-value=5.5e-15  Score=145.56  Aligned_cols=168  Identities=11%  Similarity=0.049  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      +.++..++..++..+..+.+...++. +.+++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~  100 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPE-MLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHH
Confidence            34444444455555544445454544 4567999999999999999999999999999999998 999999999999988


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      +.+++..+.                            +...+++.|++.|++.|...+...++++|++++++      |+
T Consensus       101 ~~~~~~~~~----------------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg  146 (434)
T PRK11663        101 INILFGFSS----------------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RG  146 (434)
T ss_pred             HHHHHHHHh----------------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HH
Confidence            887776642                            46778888999999988888889999999999776      89


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (356)
Q Consensus       229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~  272 (356)
                      ..+++++.+.++|..+++.+.+++.+..||++.|++.+++.++.
T Consensus       147 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        147 GWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998877654433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.67  E-value=9.4e-15  Score=139.57  Aligned_cols=159  Identities=16%  Similarity=0.104  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~  150 (356)
                      .+......++.....+.+...++.|+++++|++..+.+++.+++.++..++.+++|+++||+ |||++++++.++..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            45566666666667776777677679999999999999999999999999999999999998 99999999999999988


Q ss_pred             HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (356)
                      +++.++..                           +.+.++++|++.|++.+. .....++++|.+|+++      |+..
T Consensus        82 ~~~~~~~~---------------------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~  127 (366)
T TIGR00886        82 LWAGLAVQ---------------------------SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTA  127 (366)
T ss_pred             HHHHHHhh---------------------------hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHH
Confidence            87776520                           367788899999998654 4567789999999776      8888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh----------hcchhHHHHH
Q 018406          231 FNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGA  264 (356)
Q Consensus       231 ~~~~~~~~~iG~~i~p~i~~~i~~----------~~gw~~~f~i  264 (356)
                      .+++....++|..+++.+.+.+..          ..+|++.|++
T Consensus       128 ~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~  171 (366)
T TIGR00886       128 LGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI  171 (366)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence            888887777777777776665544          2379999844

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.66  E-value=7.7e-15  Score=141.94  Aligned_cols=173  Identities=13%  Similarity=0.116  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      +.++.+....++..+..+.+...++ .+.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence            3456666677777777666666554 56788999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      +.+++..+.                            +.+.+++.|++.|++.+...+....++.|.+++++      |+
T Consensus        81 ~~~l~~~~~----------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~  126 (382)
T PRK10091         81 GNAMFTLSS----------------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VT  126 (382)
T ss_pred             HHHHHHHhC----------------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hh
Confidence            888777652                            57889999999999999888888888899888655      78


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~  277 (356)
                      +.++.+..+..+|..++|.+++++.+..+||+.|++.+++.++..+...
T Consensus       127 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~  175 (382)
T PRK10091        127 AAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY  175 (382)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence            8888888889999999999999998889999999987776555444333

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.66  E-value=1.5e-14  Score=144.69  Aligned_cols=180  Identities=12%  Similarity=0.031  Sum_probs=130.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (356)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l  145 (356)
                      ++|+.+...+...++..+.+|++..+++.|+++.+|++...+........++..++.+++|+++||+ |||++++++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~  325 (490)
T PRK10642        247 KHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVA  325 (490)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence            3556555555555667788889999999999989999988888888888888999999999999998 999998888765


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      ..++.+++.....     .                    .+...+++++++.+++.++..+....+.+|.||++.     
T Consensus       326 ~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~-----  375 (490)
T PRK10642        326 LFVLAIPAFILIN-----S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI-----  375 (490)
T ss_pred             HHHHHHHHHHHHh-----C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-----
Confidence            5444333222111     0                    135567778888888777777778888899999888     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHH
Q 018406          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~  277 (356)
                       |++..++.+....+++.++|.+.+++.+..+ |+..+++..+..++.++..+
T Consensus       376 -Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~  427 (490)
T PRK10642        376 -RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV  427 (490)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence             8988886444455667889999999887654 66665554444444444333

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.66  E-value=9.3e-15  Score=142.95  Aligned_cols=168  Identities=16%  Similarity=0.194  Sum_probs=142.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      +.+|+.+....+..+...+..+.. ..+..++.+++|.+..+.+++.+++.++..++.++.|+++||+ |||+++.++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~   91 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIV   91 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence            344566666666666666655443 4455677889999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      +..++.+++.++.                            +...++++|++.|+|.+...+....++.|.+|+++    
T Consensus        92 ~~~~~~~~~~~~~----------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~----  139 (426)
T PRK12307         92 AYSVGTGLSGLAS----------------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL----  139 (426)
T ss_pred             HHHHHHHHHHHHh----------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH----
Confidence            9999888777653                            47889999999999999999999999999999876    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  268 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~  268 (356)
                        |++..++++.+..+|..+++.+.+++.+..+|++.|++..+.
T Consensus       140 --r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        140 --KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             --hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence              889999999999999999999999988889999999875443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.66  E-value=5.4e-15  Score=146.83  Aligned_cols=172  Identities=16%  Similarity=0.136  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~  150 (356)
                      +..+++..++..+....+ .....++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIV-NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            344445555555554433 3445566788999999999999999999999999999999998 99999999999999988


Q ss_pred             HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (356)
                      +++..+.                            +...++++|++.|++.+...+...+++.|.+|+++      |+..
T Consensus        82 ~~~~~~~----------------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~  127 (485)
T TIGR00711        82 LLCGVAP----------------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRA  127 (485)
T ss_pred             HHHhCcC----------------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHH
Confidence            8776542                            47788999999999999999999999999999766      8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      +++++....+|..++|.+++++.++.+|++.|++.+.+.++.+++...
T Consensus       128 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~  175 (485)
T TIGR00711       128 MAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFF  175 (485)
T ss_pred             HHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHH
Confidence            999999999999999999999999999999998877665554444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00895 2A0115 benzoate transport

Probab=99.65  E-value=1.2e-14  Score=139.55  Aligned_cols=174  Identities=16%  Similarity=0.111  Sum_probs=141.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      +.+|+.+....+..++..+..+ .......++.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~   90 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSIL   90 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHH
Confidence            4455555555555555545444 334455567788999999999999999999999999999999998 99999999998


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      +..++.+++....                            +...+++.+++.|++.+...+...++++|.+|++.    
T Consensus        91 ~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----  138 (398)
T TIGR00895        91 LFSVFTLLCALAT----------------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF----  138 (398)
T ss_pred             HHHHHHHHHHHcc----------------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh----
Confidence            8888777666532                            46778889999999999999999999999999766    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~  274 (356)
                        |+..+++++.+..+|..+++.+.+++.+..||++.|++.+++..+..+
T Consensus       139 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  186 (398)
T TIGR00895       139 --RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLL  186 (398)
T ss_pred             --hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHH
Confidence              899999999999999999999999999999999998887554443333

>PRK03699 putative transporter; Provisional

Probab=99.65  E-value=2.8e-14  Score=138.61  Aligned_cols=175  Identities=7%  Similarity=0.050  Sum_probs=142.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      .++||..+...+..++.....+.+...++ .+.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~   80 (394)
T PRK03699          3 SNRIKLTWISFLSYALTGALVIVTGMVMG-PIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFA   80 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence            45677777777777776666655555444 46678999999999999999999999999999999998 99999999998


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      +..++.+++.++.                            +...+++.|++.|++.+...+...+++.|.+|+++    
T Consensus        81 ~~~i~~~l~~~~~----------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~----  128 (394)
T PRK03699         81 LMILAVAGLMFSH----------------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ----  128 (394)
T ss_pred             HHHHHHHHHHHcc----------------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch----
Confidence            8888887776642                            47788899999999999888888899999998765    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHH
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~-~~gw~~~f~i~~~~~~i~~~~  275 (356)
                        |+...+..+....+|+.++|.+.+++.. ..|||+.|.+.+++.++.+++
T Consensus       129 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        129 --RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence              7888888777788899999998888765 568999998877765544433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.65  E-value=3.6e-14  Score=141.51  Aligned_cols=179  Identities=15%  Similarity=0.088  Sum_probs=130.7

Q ss_pred             ccccCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 018406           61 DLSKTG-GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI  139 (356)
Q Consensus        61 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i  139 (356)
                      .+..++ +++.+.......++..+..+.+. .+..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~  104 (476)
T PLN00028         27 LFSFARPHMRAFHLSWISFFTCFVSTFAAA-PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGS  104 (476)
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHH
Confidence            344333 34444444444444555444443 344577889999999999999999999999999999999998 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 018406          140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (356)
Q Consensus       140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~  219 (356)
                      .++.++..++.+++.++.                            +...+++.|++.|++.+... ....+++|.+|++
T Consensus       105 ~~~~~~~~~~~~~~~~~~----------------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~  155 (476)
T PLN00028        105 AFLLMLTAPAVFCMSLVS----------------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGK  155 (476)
T ss_pred             HHHHHHHHHHHHHHHHhc----------------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChh
Confidence            998888888877666542                            46677888999999887653 4556789999977


Q ss_pred             ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----h-----hcchhHHHHHHHHHHHHHHHHH
Q 018406          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----M-----EHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       220 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~----~-----~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      .      |+.+.++++...++|+.+++.+.+.+.    +     ..|||+.|++.+++.++..++.
T Consensus       156 ~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~  215 (476)
T PLN00028        156 I------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILV  215 (476)
T ss_pred             h------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence            6      889998887777777777766554432    2     2489999998877765544433

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.65  E-value=2e-14  Score=143.39  Aligned_cols=168  Identities=14%  Similarity=0.225  Sum_probs=142.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      +.+|+.+..+.+..++..+..+.+. .+..++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLIT-LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            4566766666666666666665444 455677889999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      +..++.+++.+..                            +.+.+++++++.|++.++..+....++.|.+++++    
T Consensus        94 ~~~~~~~~~~~~~----------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  141 (496)
T PRK03893         94 LFSVGTLACGFAP----------------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL----  141 (496)
T ss_pred             HHHHHHHHHHHHh----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence            9888888777642                            47788999999999999999999999999999766    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA  268 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~  268 (356)
                        |+...++++...++|..+++.+.+++.+..+|++.|++..+.
T Consensus       142 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        142 --RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence              888999999999999999999999999999999998874443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.65  E-value=1.4e-14  Score=138.00  Aligned_cols=155  Identities=14%  Similarity=0.069  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 018406           85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP  164 (356)
Q Consensus        85 ~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~  164 (356)
                      .|.+ ..+..++.+++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.+++.++.       
T Consensus        19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~-------   89 (377)
T TIGR00890        19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD-------   89 (377)
T ss_pred             Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH-------
Confidence            4433 3456778889999999999999999999999999999999998 999999999999999988877753       


Q ss_pred             CCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 018406          165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV  244 (356)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i  244 (356)
                                           +...++++|++.|++.+...+.......+.++ ++      |+...+++..+..+|..+
T Consensus        90 ---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~  141 (377)
T TIGR00890        90 ---------------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFI  141 (377)
T ss_pred             ---------------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhH
Confidence                                 57888899999999998877777778888886 33      788899999988899887


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       245 ~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      ++.+.+.+.+..||++.|++.+++.++..+..
T Consensus       142 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  173 (377)
T TIGR00890       142 LSPLITSVINLEGVPAAFIYMGIIFLLVIVLG  173 (377)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            76677777777899999998777665544433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.64  E-value=2.7e-14  Score=140.51  Aligned_cols=177  Identities=16%  Similarity=0.191  Sum_probs=127.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 018406           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSN---AVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~a~~---~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~  140 (356)
                      +++.+....+..+++.+..+. ...+..++.++++   .+..+.+.   +.....++..++.+++|+++||+ |||+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~   97 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSML   97 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHH
Confidence            344444454556666666654 4556668888874   44544333   33444455559999999999998 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 018406          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (356)
Q Consensus       141 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~  220 (356)
                      ++.+++.++.++++++.+....                    .......+++.|++.|+|.|+..+...++++|.+|+++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~  157 (432)
T PRK10406         98 ISVCMMCFGSLVIACLPGYETI--------------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR  157 (432)
T ss_pred             HHHHHHHHHHHHHhhcCCchhH--------------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence            9999999998887764210000                    00124568899999999999999999999999999876


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hhcchhHHHHHHHHHHHH
Q 018406          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGI  271 (356)
Q Consensus       221 ~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~--------~~~gw~~~f~i~~~~~~i  271 (356)
                            |+.+.++.+.+.++|..+++.+...+.        ...|||+.|++.++..++
T Consensus       158 ------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll  210 (432)
T PRK10406        158 ------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV  210 (432)
T ss_pred             ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence                  888888888888888888876654443        257999999886665543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.64  E-value=1.4e-15  Score=146.82  Aligned_cols=155  Identities=41%  Similarity=0.682  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhcc
Q 018406          136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ  215 (356)
Q Consensus       136 r~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~  215 (356)
                      +|+++++.+++++|.+++++++..+..                   +++.+...++++++++++|.|+.++++.++++||
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~-------------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq   61 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSL-------------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQ   61 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchh-------------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence            589999999999999998887753222                   1234578899999999999999999999999999


Q ss_pred             CCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccccc-CCCCChhH
Q 018406          216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT  294 (356)
Q Consensus       216 f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~  294 (356)
                      +++++   +.++.++|+|||++.|+|+.+++++.+|+++++||.++|+++.+.++++++.++.++++|+.. ++.+++..
T Consensus        62 ~~~~~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~  138 (372)
T PF00854_consen   62 YDEDD---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT  138 (372)
T ss_dssp             SSTTT---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred             hcccc---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence            99764   246899999999999999999999999999999999999999999999999999999999888 67778777


Q ss_pred             H-HHHHHHHHHhccccCCC
Q 018406          295 R-VAQVLVAAFRKRHAAFS  312 (356)
Q Consensus       295 ~-~~~vl~~~~~~~~~~~~  312 (356)
                      + ...++....+++....|
T Consensus       139 ~~~~~~~~~~~~~~~~~~~  157 (372)
T PF00854_consen  139 NFIKLVLVAAFKKRKLAVP  157 (372)
T ss_dssp             --SHHHHHHHHHHHCCCH-
T ss_pred             hhHHHHHHHHHHHhhcccc
Confidence            7 66666777777766654

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.64  E-value=1.1e-14  Score=138.96  Aligned_cols=152  Identities=20%  Similarity=0.199  Sum_probs=133.3

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 018406           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (356)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  170 (356)
                      ....++.+++|.+..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.+++.++.             
T Consensus        15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~-------------   80 (399)
T TIGR00893        15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG-------------   80 (399)
T ss_pred             HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc-------------
Confidence            344557889999999999999999999999999999999998 999999999999888888777652             


Q ss_pred             ccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018406          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (356)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~  250 (356)
                                     +.+.++++|++.|++.+...+....+++|.+|+++      |+..+++++...++|..+++.+.+
T Consensus        81 ---------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~  139 (399)
T TIGR00893        81 ---------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVG  139 (399)
T ss_pred             ---------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHH
Confidence                           47889999999999999999999999999999766      899999999999999999999999


Q ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406          251 YIQMEHGWGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       251 ~i~~~~gw~~~f~i~~~~~~i~~~~~~  277 (356)
                      ++.+..+|++.|++.+++.++..++..
T Consensus       140 ~l~~~~~~~~~~~~~~~~~~~~~~~~~  166 (399)
T TIGR00893       140 WILIHFSWQWAFIIEGVLGIIWGVLWL  166 (399)
T ss_pred             HHHHhCCchHHHHHHHHHHHHHHHHhh
Confidence            999999999999887776555444433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.63  E-value=5.3e-14  Score=136.26  Aligned_cols=167  Identities=16%  Similarity=0.119  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (356)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~  152 (356)
                      ...+..+....+.......++ .+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+.++++.+++.++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHH
Confidence            334444444445444444444 45678999999999999999999999999999999998 9999999999988888877


Q ss_pred             HHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHH
Q 018406          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~  232 (356)
                      +..+.                            +...++++|++.|++.+...+...+++.|.+++++      |+...+
T Consensus        85 ~~~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~  130 (392)
T PRK10473         85 CSLAE----------------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLS  130 (392)
T ss_pred             HHHhC----------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence            66542                            36678889999999999888889999999999776      899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406          233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       233 ~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~  275 (356)
                      +++...++|..++|.+++++.+..+|++.|++.+++.++..++
T Consensus       131 ~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~  173 (392)
T PRK10473        131 LLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL  173 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998888889999998877665554444

>PRK11043 putative transporter; Provisional

Probab=99.63  E-value=5e-14  Score=136.85  Aligned_cols=161  Identities=16%  Similarity=0.241  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHHH--HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhh
Q 018406           81 ERMAYFGLSVNMVTF--MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT  158 (356)
Q Consensus        81 ~~~~~~~~~~~l~~y--l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~  158 (356)
                      ..+.++.....+|.+  +.+++|.+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++..++.+++.... 
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-   92 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE-   92 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc-
Confidence            333333333344433  6789999999999999999999999999999999998 999999999988888777766542 


Q ss_pred             ccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHH
Q 018406          159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~  238 (356)
                                                 +...+++.|++.|+|.+...+...++..|.+++++      +++.++..+...
T Consensus        93 ---------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  139 (401)
T PRK11043         93 ---------------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLV  139 (401)
T ss_pred             ---------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHH
Confidence                                       46778889999999988877777888999998765      677777777778


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       239 ~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      .+|..++|.+++++.+..||++.|++.+++.++..++.
T Consensus       140 ~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~  177 (401)
T PRK11043        140 ALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPT  177 (401)
T ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999988777665554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.62  E-value=4e-14  Score=137.60  Aligned_cols=145  Identities=12%  Similarity=0.139  Sum_probs=125.6

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccc
Q 018406           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (356)
Q Consensus        92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  171 (356)
                      +...+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+++.++.+++.++.              
T Consensus        31 ~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~--------------   95 (393)
T PRK09705         31 LLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP--------------   95 (393)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc--------------
Confidence            34457789999999999999999999999999999999998 999999999999999999988753              


Q ss_pred             cccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018406          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  251 (356)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~  251 (356)
                                    +...++++|++.|+|.+...+.....+.+.++ ++      |+.+++.+..+.++|..+++.++++
T Consensus        96 --------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~  154 (393)
T PRK09705         96 --------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPW  154 (393)
T ss_pred             --------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHH
Confidence                          46778899999999999988888999999887 44      7899999999999999999999998


Q ss_pred             HHhhc-chhHHHHHHHHHHHHH
Q 018406          252 IQMEH-GWGSAFGALAIAMGIS  272 (356)
Q Consensus       252 i~~~~-gw~~~f~i~~~~~~i~  272 (356)
                      +.++. +|++.+.+.++..++.
T Consensus       155 l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        155 LVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHH
Confidence            88875 7998876554443333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.62  E-value=4.2e-14  Score=135.87  Aligned_cols=153  Identities=17%  Similarity=0.229  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 018406           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (356)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~  167 (356)
                      ....++.+. +++|++..+.+.+.+++.++..++.+++|+++||+ |||+++.++.++..++.+++....          
T Consensus        10 ~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~----------   77 (377)
T PRK11102         10 YLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ----------   77 (377)
T ss_pred             HhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc----------
Confidence            334455554 57999999999999999999999999999999998 999999999999888888777642          


Q ss_pred             CccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (356)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~  247 (356)
                                        +...+++.+++.|++.+...+...+++.|.+++++      |+..+++++....+|..++|.
T Consensus        78 ------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~  133 (377)
T PRK11102         78 ------------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPI  133 (377)
T ss_pred             ------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                              46778889999999999988999999999999776      899999999999999999999


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          248 LVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       248 i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      +++++.+..+|++.|++.+++.++..++.
T Consensus       134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102        134 IGGWLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            99999998999999988777665554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.62  E-value=2.1e-14  Score=140.89  Aligned_cols=140  Identities=19%  Similarity=0.278  Sum_probs=119.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcc
Q 018406          104 FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK  183 (356)
Q Consensus       104 ~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (356)
                      ..+.+++.+++.++..++.+++|+++||+ |||++++++.+++.++.+++.+...                         
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~-------------------------  123 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF-------------------------  123 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc-------------------------
Confidence            88999999999999999999999999998 9999999999999988888765421                         


Q ss_pred             hhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHhhcchhH
Q 018406          184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV---VYIQMEHGWGS  260 (356)
Q Consensus       184 ~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~---~~i~~~~gw~~  260 (356)
                      ..+.+.++++|++.|+|.+...+...++++|.+++++      |+..+++++.+.++|..+++.+.   ..+.+..+||+
T Consensus       124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~  197 (481)
T TIGR00879       124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRI  197 (481)
T ss_pred             ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHH
Confidence            0135678999999999999999999999999999877      89999999999999999999988   55556779999


Q ss_pred             HHHHHHHHHHHHHHH
Q 018406          261 AFGALAIAMGISNML  275 (356)
Q Consensus       261 ~f~i~~~~~~i~~~~  275 (356)
                      .|++.++..++.++.
T Consensus       198 ~f~~~~~~~~~~~~~  212 (481)
T TIGR00879       198 PLGLQLIPAGLLFLG  212 (481)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999865555444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.61  E-value=2.1e-13  Score=132.26  Aligned_cols=169  Identities=12%  Similarity=-0.013  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-----a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l  145 (356)
                      ........++..++++.....++.|++ ++|.+..+     .+.+.+++.++..++.++.|+++||+ |||++++++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   93 (408)
T PRK09874         16 LTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALG   93 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHH
Confidence            455556667777777667677777764 58887654     37788889999999999999999998 999999999888


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      ..++.+++....                            +.+.+++.+++.|++.+ ..+....++.|.+++++     
T Consensus        94 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-----  139 (408)
T PRK09874         94 MGIVMVLMGLAQ----------------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK-----  139 (408)
T ss_pred             HHHHHHHHHHHh----------------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh-----
Confidence            888777665532                            47778889999998754 45667778889988765     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                       |+...++++....+|..++|.+.+++.+..+|++.|++.+++.++..+..
T Consensus       140 -~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  189 (408)
T PRK09874        140 -SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVT  189 (408)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence             88899999999999999999999999998999999988777665554443

>TIGR00897 2A0118 polyol permease family

Probab=99.61  E-value=1.1e-13  Score=134.74  Aligned_cols=170  Identities=12%  Similarity=0.061  Sum_probs=135.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      -+.||.+....+..++..+..+....+++.|+ +++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~   86 (402)
T TIGR00897         9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL   86 (402)
T ss_pred             cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence            45567778888888888787776777777777 67899999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      +..++.+++.....     .                   ..+...+++.|++.|+|.+...+...+.+.+.+++++    
T Consensus        87 ~~~~~~~~~~~~~~-----~-------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~----  138 (402)
T TIGR00897        87 LWCVGHAAFIVFGL-----G-------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN----  138 (402)
T ss_pred             HHHHHHHHHHHHhc-----c-------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH----
Confidence            98887665432110     0                   0146677788999999988777777778889888766    


Q ss_pred             hhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhcchhHHHHHHH
Q 018406          225 THLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALA  266 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~-~i~p~i~~~i~~~~gw~~~f~i~~  266 (356)
                        |++..++++.+.++|. .++|.+++++.+..||+..++...
T Consensus       139 --~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~  179 (402)
T TIGR00897       139 --LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSAL  179 (402)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence              8999999999999986 578988889888888765554433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.61  E-value=3.5e-14  Score=140.99  Aligned_cols=151  Identities=17%  Similarity=0.198  Sum_probs=120.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhc-cccCCCCCCccccccccCCC
Q 018406          101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM-KVFMPNQDNCDRISQLLGSC  179 (356)
Q Consensus       101 ~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  179 (356)
                      +.+..+.+++.+++.++..++++++|+++||+ |||++++++.+++.++.+.+++.... ....                
T Consensus        51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~----------------  113 (479)
T PRK10077         51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIG----------------  113 (479)
T ss_pred             cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccccccc----------------
Confidence            88889999999999999999999999999998 99999999999998887776653110 0000                


Q ss_pred             CCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------
Q 018406          180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ------  253 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~------  253 (356)
                       .++......++++|++.|++.|+..+...++++|.+|+++      |+..+++++.+..+|..+++.++.++.      
T Consensus       114 -~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  186 (479)
T PRK10077        114 -PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS  186 (479)
T ss_pred             -ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence             0011235678899999999999999999999999999876      899999999999999999887665543      


Q ss_pred             --hhcchhHHHHHHHHHHHHHHHH
Q 018406          254 --MEHGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       254 --~~~gw~~~f~i~~~~~~i~~~~  275 (356)
                        +..|||+.|++.++..++.++.
T Consensus       187 ~~~~~gWr~~f~~~~~~~~~~~~~  210 (479)
T PRK10077        187 WLNTDGWRYMFASEAIPALLFLML  210 (479)
T ss_pred             ccccCChHHHHHHHHHHHHHHHHH
Confidence              3468999998876665554433

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.61  E-value=9e-14  Score=139.09  Aligned_cols=175  Identities=18%  Similarity=0.132  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HH--HH-H-HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 018406           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF--AD--SS-N-AVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~--~~--a~-~-~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~  141 (356)
                      ++.++...+..+++.+.+. +..+...++.++++.+.  ..  .+ . +.++..++..++.+++|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            4555666667777776665 44455567788875433  21  11 1 24667788999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCh
Q 018406          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (356)
Q Consensus       142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~  221 (356)
                      +.+++.++.++++++.+...+.                    -....+++++|++.|+|.|+..+...++++|.+|+++ 
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g--------------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~-  151 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIG--------------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK-  151 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHH--------------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-
Confidence            9999999998888753100000                    0011247889999999999999999999999999877 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hhcchhHHHHHHHHHHH
Q 018406          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG  270 (356)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~--------~~~gw~~~f~i~~~~~~  270 (356)
                           |+...++...+..+|..+++.+...+.        ...|||+.|++.++..+
T Consensus       152 -----Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l  203 (490)
T PRK10642        152 -----RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI  203 (490)
T ss_pred             -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence                 888888888777778777776554432        25799999988655433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.60  E-value=8.4e-14  Score=138.09  Aligned_cols=150  Identities=14%  Similarity=0.110  Sum_probs=122.9

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccc
Q 018406           93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI  172 (356)
Q Consensus        93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  172 (356)
                      ...+.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.+++.++.               
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~---------------  105 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS---------------  105 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh---------------
Confidence            3456689999999999999999999999999999999998 999999999988888887776642               


Q ss_pred             ccccCCCCCcchhhHHHHHH-HHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018406          173 SQLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  251 (356)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~-~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~  251 (356)
                                   +...+++ .|++.|++.+...+...+++.+.|+ ++      |+...++++.+..+|..++|.++++
T Consensus       106 -------------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~  165 (455)
T TIGR00892       106 -------------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQY  165 (455)
T ss_pred             -------------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHH
Confidence                         3455554 4578899888765666677888885 44      8999999999999999999999999


Q ss_pred             HHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          252 IQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       252 i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      +.+..||++.|++.+++.++..+..++
T Consensus       166 l~~~~gwr~~f~~~~~~~~~~~v~~~~  192 (455)
T TIGR00892       166 LFESFGWRGSFLILGGLLLHCCVCGAL  192 (455)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988776655444333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.60  E-value=8.6e-14  Score=130.93  Aligned_cols=168  Identities=20%  Similarity=0.258  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~  151 (356)
                      +.+....++..+..+.....++.|. +++|.+..+.+.+.+...++..++.++.|+++||+ |||+.+.++.++..++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence            3445566677777776666666665 56799999999999999999999999999999998 999999999999998888


Q ss_pred             HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (356)
                      ++....                            +...+++++++.|++.+...+...++..|.+++++      |+..+
T Consensus        80 ~~~~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  125 (352)
T cd06174          80 LLAFAS----------------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRAL  125 (352)
T ss_pred             HHHHhc----------------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhh
Confidence            777642                            47788999999999999999999999999999876      89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       232 ~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~  275 (356)
                      ++.+....+|..++|.+.+++.+..+|++.|++.++..++..+.
T Consensus       126 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (352)
T cd06174         126 GLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL  169 (352)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999889999998877765555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.60  E-value=1.8e-13  Score=133.14  Aligned_cols=162  Identities=14%  Similarity=0.064  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~  150 (356)
                      .+.+....++..++...+...++. +..+++.+....+++.+.+.+...++.+++|+++||+ |||++++++.+++.++.
T Consensus         5 f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~   82 (393)
T PRK11195          5 FYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGC   82 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHH
Confidence            455566666666654444333443 4678999999999999999999999999999999998 99999999999998877


Q ss_pred             HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (356)
                      +.+....                            +   .++.|++.|++.++..+...++++|.+|+++      |+++
T Consensus        83 ~~~~~~~----------------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a  125 (393)
T PRK11195         83 LLMLFGI----------------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKA  125 (393)
T ss_pred             HHHHHHH----------------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence            7655431                            2   2678899999999999999999999999776      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (356)
Q Consensus       231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~  272 (356)
                      .++......+|..+||.+++++.+. .|+..+.+.+.+.+++
T Consensus       126 ~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~  166 (393)
T PRK11195        126 NGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA  166 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999875 3666666655444333

>PRK10133 L-fucose transporter; Provisional

Probab=99.60  E-value=3.6e-13  Score=132.93  Aligned_cols=154  Identities=13%  Similarity=-0.028  Sum_probs=120.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~  146 (356)
                      ....++.+.+..+...+........+ ..+++++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~-p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence            44455555555555555554444444 456899999999999999999999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (356)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (356)
                      .++.+++.....                         ..+...++++|++.|+|.|...+...++++|..+++.      
T Consensus       102 ~~~~~l~~~~~~-------------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------  150 (438)
T PRK10133        102 ALGAALFWPAAE-------------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------  150 (438)
T ss_pred             HHHHHHHHHHHh-------------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------
Confidence            999877643211                         0157889999999999999999999999998755443      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018406          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (356)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~p~i~~~i~  253 (356)
                      +....+.++....+|..+++.+++.+.
T Consensus       151 ~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        151 GHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444577777778888888888776543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.59  E-value=3.2e-13  Score=132.20  Aligned_cols=171  Identities=11%  Similarity=0.028  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~  151 (356)
                      +.+....++..+.. ++...+...+++++|.+..+.+++.+.+.++..+++++.|++.||+ |||++++++.+++.++.+
T Consensus         6 ~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~   83 (410)
T TIGR00885         6 ALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAF   83 (410)
T ss_pred             HHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            44444444444333 4555566778999999999999999999999999999999999998 999999999999999987


Q ss_pred             HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (356)
                      ++..+..                         ..+.+.+++++++.|+|.|...+...+++.+..|+++      +++..
T Consensus        84 l~~~~~~-------------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~  132 (410)
T TIGR00885        84 LFWPAAE-------------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRL  132 (410)
T ss_pred             HHHHHHh-------------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHH
Confidence            7654321                         0147788899999999999999999999999888765      67778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh--------------------------hcchhHHHHHHHHHHHHHHHH
Q 018406          232 NFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       232 ~~~~~~~~iG~~i~p~i~~~i~~--------------------------~~gw~~~f~i~~~~~~i~~~~  275 (356)
                      ++.+...++|..++|.+.+.+..                          ..+|++.|.+.+++.++..++
T Consensus       133 ~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       133 NLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888999999988876642                          236999998877765544333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.59  E-value=4e-14  Score=134.50  Aligned_cols=177  Identities=23%  Similarity=0.254  Sum_probs=141.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHH-HHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIA-IFTTIYL  147 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~-GRr~~i~-~~~~l~~  147 (356)
                      -+|.+.+..++..+.-|++..+.|.|+.+..|++..++.+..+++..+...++++.||+||+++ |||.... ++.++..
T Consensus       253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~  332 (448)
T COG2271         253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT  332 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999999999999999999998 8886544 3344444


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      ++.+....+       |+                   .+..+..+.++++|+..-+..-.+.....|..|.+-      -
T Consensus       333 ~~~~~~w~~-------~~-------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------a  380 (448)
T COG2271         333 ASLVLYWLA-------PN-------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------A  380 (448)
T ss_pred             HHHHHHHcC-------CC-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------c
Confidence            444444332       21                   246777777888898888888777777788888665      6


Q ss_pred             hhHHHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          228 DRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       228 ~~~~~~~~~~~~i-G~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      |++.+...+...+ |+.++....+++.|.+||..+|.+..+..+++.++++.
T Consensus       381 GtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~  432 (448)
T COG2271         381 GTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP  432 (448)
T ss_pred             cchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence            7777777777777 88888888899999999999998877766655554443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.58  E-value=2.4e-13  Score=131.34  Aligned_cols=155  Identities=15%  Similarity=0.168  Sum_probs=132.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~  147 (356)
                      .+.++.+++..++..+....+...++.|+. ++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence            456788888888888887777777777765 7899999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      ++.+.+.++.                            +.+.++++|++.|++.+...+...+...+..++++      |
T Consensus        83 ~~~~~~~~~~----------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~  128 (381)
T PRK03633         83 AGCAGLGLMV----------------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------R  128 (381)
T ss_pred             HHHHHHHHhc----------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------H
Confidence            8887776642                            47788899999999999888877777778877655      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw  258 (356)
                      ++.+++++...++|..+++.+.+++.+...+
T Consensus       129 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  159 (381)
T PRK03633        129 GRLLAAYMMVYYLGTVLGQLLVSKVSTELMS  159 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            9999999999999999999999988765433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.58  E-value=3.2e-14  Score=141.38  Aligned_cols=152  Identities=16%  Similarity=0.067  Sum_probs=124.5

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccc
Q 018406           93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI  172 (356)
Q Consensus        93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  172 (356)
                      ...+.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.+.+.....  ..          
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--~~----------  118 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG--SG----------  118 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh--cc----------
Confidence            4467889999999999999999999999999999999998 9999999888887776666554310  00          


Q ss_pred             ccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018406          173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI  252 (356)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i  252 (356)
                                 ..+...+++.|++.|++.+...+....+++|.+|+++      |+..++++..+.++|..+++.+..++
T Consensus       119 -----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        119 -----------SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWG  181 (467)
T ss_pred             -----------cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHH
Confidence                       0257889999999999999988999999999999887      89999999999999999999888777


Q ss_pred             Hhhc---chhHHHHHHHHHHHHHHH
Q 018406          253 QMEH---GWGSAFGALAIAMGISNM  274 (356)
Q Consensus       253 ~~~~---gw~~~f~i~~~~~~i~~~  274 (356)
                      ....   +|+..|.+.+++.++..+
T Consensus       182 ~~~~~~~~~~~~f~~~g~~~~~~~i  206 (467)
T PRK09556        182 ANYFFDGHVIGMFIFPSIIALIIGF  206 (467)
T ss_pred             HHhhccCcchhHHHHHHHHHHHHHH
Confidence            6653   588888776665544333

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.58  E-value=2.5e-13  Score=130.01  Aligned_cols=169  Identities=11%  Similarity=0.037  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHH
Q 018406           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGIT  154 (356)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~-~~~l~~~g~~~~~  154 (356)
                      +..++..++.......++.|+++++|.+..+.+.+.+.+.+...+..++.|+++||+ |||+.+++ +.++..++.+++.
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence            445666667767777888899999999999999999999999999999999999998 99887665 4444455555554


Q ss_pred             HHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHH
Q 018406          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (356)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~  234 (356)
                      .+.                            +...+++.+++.+.+.+...+...++..|..+++.    +.+....++.
T Consensus        83 ~~~----------------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~  130 (375)
T TIGR00899        83 WNR----------------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG----REAVMFSSVM  130 (375)
T ss_pred             hcc----------------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc----hhhHHHHHHH
Confidence            431                            46667777877777767777777777888776544    1122335667


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406          235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       235 ~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~  277 (356)
                      +...++|..++|.+++++.+..||++.|++.+++.++..++.+
T Consensus       131 ~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  173 (375)
T TIGR00899       131 RAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVW  173 (375)
T ss_pred             HHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            7778899999999999999989999999988776555544433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.58  E-value=4.2e-13  Score=132.15  Aligned_cols=160  Identities=8%  Similarity=-0.069  Sum_probs=119.2

Q ss_pred             CCCcccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018406           57 KPIADLSKTGG---WIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAY  132 (356)
Q Consensus        57 ~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~  132 (356)
                      ||. -|..+++   ||.++...+..+..-+..+ +.+.+..++.+ ++|++..+.+++.+++.+++.++.++.|++.||+
T Consensus        20 ~~~-~w~~~~~~~a~r~l~~s~~~f~~~F~~w~-~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~   97 (462)
T PRK15034         20 NPA-FWENKGKHIARRNLWISVSCLLLAFCVWM-LFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF   97 (462)
T ss_pred             ChH-HHhhcCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344 4554544   3666665555444444444 44445555554 7999999999999999999999989999999998


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhh
Q 018406          133 LGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG  212 (356)
Q Consensus       133 ~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~  212 (356)
                       |.|+++.++.++..+..+++.++...  .                     ..++..+++.+++.|++ ++..+.....+
T Consensus        98 -G~R~v~~~~~ll~~i~~~~~~~a~~~--~---------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~v  152 (462)
T PRK15034         98 -GGRRWTVFSTAILIIPCVWLGIAVQN--P---------------------NTPFGIFIVIALLCGFA-GANFASSMGNI  152 (462)
T ss_pred             -CChHHHHHHHHHHHHHHHHHHHHHcc--c---------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHH
Confidence             99999999999988888877764210  0                     01578899999999998 66778888999


Q ss_pred             hccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018406          213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (356)
Q Consensus       213 ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~  249 (356)
                      +++||+++      +|.+.+++....++|..+++.+.
T Consensus       153 s~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~  183 (462)
T PRK15034        153 SFFFPKAK------QGSALGINGGLGNLGVSVMQLVA  183 (462)
T ss_pred             HHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999876      89999988655666665554444

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.58  E-value=4e-13  Score=134.82  Aligned_cols=178  Identities=15%  Similarity=0.112  Sum_probs=129.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 018406           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~  141 (356)
                      +++.+.++.+..++..+....+....+ .+..+     .+.+..+.+++.+.+.++..++.+++|+++||+ |||+++.+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~   91 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence            344444455555554444433333223 33332     234556678899999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCh
Q 018406          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (356)
Q Consensus       142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~  221 (356)
                      +.+++.++.+++.++...   .+                   ..+...++++|++.|++.|+..+..+.+++|.+|++. 
T Consensus        92 ~~~~~~v~~~~~~~~~~~---~~-------------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~-  148 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGS---SP-------------------KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW-  148 (502)
T ss_pred             HHHHHHHHHHHHHHccCc---cc-------------------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh-
Confidence            999999988877764210   00                   0135789999999999999999999999999999887 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------hcchhHHHHHHHHHHHHHHH
Q 018406          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------------------EHGWGSAFGALAIAMGISNM  274 (356)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~-----------------------~~gw~~~f~i~~~~~~i~~~  274 (356)
                           |+...++++....+|..+++.+..++..                       ..+||+.|.+.++..++.++
T Consensus       149 -----Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~  219 (502)
T TIGR00887       149 -----RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY  219 (502)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence                 9999999999999999888887765432                       13699998766655544333

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.57  E-value=3.5e-14  Score=135.27  Aligned_cols=150  Identities=13%  Similarity=0.054  Sum_probs=129.5

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccc
Q 018406           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (356)
Q Consensus        92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  171 (356)
                      ...++.+++|++..+.+.+.+++.++..++.++.|+++||+ |||++++++.++..++.+++.++.              
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~--------------   81 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST--------------   81 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh--------------
Confidence            44578889999999999999999999999999999999998 999999999999988888877653              


Q ss_pred             cccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH-HHHH
Q 018406          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVV  250 (356)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p-~i~~  250 (356)
                                    +.+.+++++++.|++.+...+...++++|.+|+++      |+...++++.+..+|..+++ ++..
T Consensus        82 --------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~  141 (379)
T TIGR00881        82 --------------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLF  141 (379)
T ss_pred             --------------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHH
Confidence                          47788899999999999999999999999999876      88888999999999999999 5666


Q ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          251 YIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       251 ~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      .+.+..+|++.|++.+++.++..++.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (379)
T TIGR00881       142 GIAELYSWHWVFIVPGIIAIIVSLIC  167 (379)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            77777899999988776655444333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.57  E-value=1.1e-13  Score=136.95  Aligned_cols=152  Identities=11%  Similarity=0.054  Sum_probs=120.5

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 018406           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (356)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  170 (356)
                      ....|+.++ |++..+.+++.+++.++..++.+++|+++||+ |||++++++.++..++.+.+.+...   .        
T Consensus        50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~---~--------  116 (452)
T PRK11273         50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW---A--------  116 (452)
T ss_pred             HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc---c--------
Confidence            344577777 99999999999999999999999999999998 9999999999998888877765421   0        


Q ss_pred             ccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH-HHHHHH
Q 018406          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLV  249 (356)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~-i~p~i~  249 (356)
                                   ..+...+++.+++.|++.+...+.......|++|+++      |+..+++++.+.++|+. ++|++.
T Consensus       117 -------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~  177 (452)
T PRK11273        117 -------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFL  177 (452)
T ss_pred             -------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence                         0146677888999999998888888888999999776      89999999999998874 456544


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHH
Q 018406          250 VYIQMEHGWGSAFGALAIAMGISNM  274 (356)
Q Consensus       250 ~~i~~~~gw~~~f~i~~~~~~i~~~  274 (356)
                      ..+....+|++.|++.+++.++..+
T Consensus       178 ~~~~~~~gw~~~f~i~~~~~~~~~~  202 (452)
T PRK11273        178 LGMAWFNDWHAALYMPAFAAILVAL  202 (452)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3343345899999987766554433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.57  E-value=2.8e-14  Score=146.78  Aligned_cols=207  Identities=15%  Similarity=0.120  Sum_probs=150.5

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      ..+++.+++.+....+......++.......+.++|+++..+.+++.+.+.++..++.++.|+++||+ ||++.+.++.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~l  106 (633)
T TIGR00805        28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCA  106 (633)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHH
Confidence            34566555555545555555556666677788999999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhccc-cC-------------CCCCCccccccc-------cCCCCCcc--hhhHHHHHHHHHHHHHhh
Q 018406          145 IYLAGLTGITLCATMKV-FM-------------PNQDNCDRISQL-------LGSCEPAK--SWQMLYLYTVLYITGFGA  201 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~-~~-------------~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~l~gig~  201 (356)
                      ++.+|.+++++...+.. ..             .+.+.|......       ...|...+  .....+++++|++.|+|.
T Consensus       107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~  186 (633)
T TIGR00805       107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA  186 (633)
T ss_pred             HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence            99999988876531100 00             000122100000       00122221  123567889999999999


Q ss_pred             hchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------------c-hh
Q 018406          202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---------------------G-WG  259 (356)
Q Consensus       202 g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~---------------------g-w~  259 (356)
                      +...+...+++.|.+|+++      ++...++++.+..+|.++|+++++++.+.+                     | |+
T Consensus       187 ~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw  260 (633)
T TIGR00805       187 TPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW  260 (633)
T ss_pred             CcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence            9999999999999999887      999999999999999999999999887543                     2 66


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 018406          260 SAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       260 ~~f~i~~~~~~i~~~~~~~  278 (356)
                      .+|.+.+++.++..+.++.
T Consensus       261 l~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       261 IGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            7777766665554444333

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.57  E-value=1.8e-13  Score=133.71  Aligned_cols=171  Identities=19%  Similarity=0.153  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (356)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~  154 (356)
                      +...++..+........++.+ .++++.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+.+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~~  100 (417)
T PRK10489         23 FIARFISIFGLGLLGVAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGLA  100 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHHH
Confidence            333445545544344444544 456788999999999999999999999999999998 999999988887777666554


Q ss_pred             HHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHH
Q 018406          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (356)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~  234 (356)
                      +....    .                   ..+.+.+++.+++.|++.+...+...+++.|.+|+++      +++..+++
T Consensus       101 ~~~~~----~-------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  151 (417)
T PRK10489        101 LNAFL----P-------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAIT  151 (417)
T ss_pred             HHHHc----C-------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHH
Confidence            32110    0                   0146777888999999988888888889999998765      88888998


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       235 ~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      +...++|..++|.+++++.+..+|++.|++.++..++..++.
T Consensus       152 ~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T PRK10489        152 MLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL  193 (417)
T ss_pred             HHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999988899999988776655554443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.57  E-value=7.1e-14  Score=138.64  Aligned_cols=145  Identities=14%  Similarity=0.141  Sum_probs=125.5

Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCC
Q 018406           99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (356)
Q Consensus        99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (356)
                      +++++..+.+.+.+.+.+++.++.+++|+++||+ |||+++.++.++..++.+++..+..                    
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------------  128 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG--------------------  128 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence            6889999999999999999999999999999998 9999999999888877766544321                    


Q ss_pred             CCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-c
Q 018406          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G  257 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~-g  257 (356)
                            .....+++.|++.|++.++..+....+++|.+|+++      |+.+.++++.+..+|..+++.+.+++.+.. |
T Consensus       129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g  196 (465)
T TIGR00894       129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG  196 (465)
T ss_pred             ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence                  135678889999999999999999999999999877      999999999999999999999999999884 9


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 018406          258 WGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       258 w~~~f~i~~~~~~i~~~~~  276 (356)
                      |++.|++.+++.++..++.
T Consensus       197 w~~~f~i~~~~~~~~~~~~  215 (465)
T TIGR00894       197 WPMIFYVFGIVGCAWSLLW  215 (465)
T ss_pred             CCeehhhhhHHHHHHHHHH
Confidence            9999998877655444433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.56  E-value=3.2e-13  Score=134.26  Aligned_cols=176  Identities=16%  Similarity=0.070  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      +.+|.+.+..++....++++..+++.|+++.+|++..+++.......++..++.+++|+++||+ |||+.+.+...+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            4567777888888888888888999999999999999999999999999999999999999998 998877665444443


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      +..++.+..      .                    .+....++.+++.|++..+..........|.+|++.      ++
T Consensus       337 ~~~~~~~~~------~--------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g  384 (467)
T PRK09556        337 IFTLGVYQH------A--------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IG  384 (467)
T ss_pred             HHHHHHHHh------c--------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HH
Confidence            332222211      0                    024445566666675544444444466679999877      99


Q ss_pred             hHHHHHHHHHHH-HHHHHHHHHHHHHh------------hcchhHHHHHHHHHHHHHHHHHH
Q 018406          229 RFFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       229 ~~~~~~~~~~~i-G~~i~p~i~~~i~~------------~~gw~~~f~i~~~~~~i~~~~~~  277 (356)
                      .+.++.+...++ |++++|.+.|++.+            ..+|+..|++..++.+++++..+
T Consensus       385 ~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        385 VANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            999999988886 77999999999999            56899999888777766655444

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.55  E-value=1.7e-12  Score=126.14  Aligned_cols=174  Identities=11%  Similarity=0.084  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      +..+..+...++....++.+..+++.|+++++|++..+++.+.....++..++.+++|+++||+ |||+.+..+.+..++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~  294 (393)
T PRK15011        216 RDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVC  294 (393)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence            3333343333444444555566788899999999999988888887788888999999999998 999988776655544


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      ....+....                            +...+++.+++.+++.|...+....+..|.+|+ .      ++
T Consensus       295 ~~~~~~~~~----------------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g  339 (393)
T PRK15011        295 FYAGMLMAH----------------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AG  339 (393)
T ss_pred             HHHHHHHHh----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cc
Confidence            433322211                            344555666777666666666667778888874 3      67


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      +..++++...++|..+++.+.+++.+..||+..|.+..++.+++++..+.
T Consensus       340 ~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        340 SATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            88888888889999999999999999899999998877776666655544

>PRK15075 citrate-proton symporter; Provisional

Probab=99.55  E-value=5.8e-13  Score=131.11  Aligned_cols=175  Identities=15%  Similarity=0.098  Sum_probs=126.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHH-----HHHHHHHHHHHHHHhhcchhHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN-AVNNFLG-----ISQASSVLGGFLADAYLGRYWT  138 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~-~~~~~~~-----~~~~~~~~~G~lsD~~~GRr~~  138 (356)
                      ..+|+.....++..++..+....+. .+..++.++++.+..+.+. ..+....     ...++.++.|+++||+ |||++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~   88 (434)
T PRK15075         11 ESKARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKG   88 (434)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHH
Confidence            4566677777777777777776554 4555778889887766433 3332222     2246788999999998 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 018406          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (356)
Q Consensus       139 i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~  218 (356)
                      ++++.+++.++.+++.++.+...+.                    ......++++|++.|++.++..+....+++|.+|+
T Consensus        89 l~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~  148 (434)
T PRK15075         89 LIVTLSIMASGTLLIAFVPGYATIG--------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP  148 (434)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc
Confidence            9999999999988887653100000                    00012568899999999999888889999999998


Q ss_pred             CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--------HhhcchhHHHHHHHH
Q 018406          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--------QMEHGWGSAFGALAI  267 (356)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i--------~~~~gw~~~f~i~~~  267 (356)
                      ++      |+...+++....++|..+++.+++.+        .+..|||+.|++..+
T Consensus       149 ~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        149 GR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             cc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            87      89999988887777777777766655        246799999987543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.54  E-value=2.2e-13  Score=134.30  Aligned_cols=153  Identities=11%  Similarity=0.056  Sum_probs=123.7

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccc
Q 018406           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (356)
Q Consensus        92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  171 (356)
                      ...++++ +|++..+.+++.+++.++..++.+++|+++||+ |||+++.++.++..++.+++.....   .         
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~---~---------  114 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPW---A---------  114 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccc---c---------
Confidence            3446665 599999999999999999999999999999998 9999999998888887776554311   0         


Q ss_pred             cccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018406          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  251 (356)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~  251 (356)
                                  ..+...+++.+++.|++.|...+.....+.|.+|+++      |+..+++++...++|+.+++.+.++
T Consensus       115 ------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~  176 (438)
T TIGR00712       115 ------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLL  176 (438)
T ss_pred             ------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHH
Confidence                        0135667788999999999888888899999999887      9999999999999999999887776


Q ss_pred             HH-hhcchhHHHHHHHHHHHHHHHHH
Q 018406          252 IQ-MEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       252 i~-~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      +. ...+|++.|++.+++.++..++.
T Consensus       177 ~~~~~~~w~~~f~~~~~~~~i~~~~~  202 (438)
T TIGR00712       177 GMAWFNDWHAALYFPAICAIIVALFA  202 (438)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            44 45689999998777765544433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09952 shikimate transporter; Provisional

Probab=99.54  E-value=6.7e-13  Score=130.94  Aligned_cols=178  Identities=16%  Similarity=0.158  Sum_probs=127.6

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhcchhH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRYW  137 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~s~~~a~~~~-----~~~~~~~~~~~~~~G~lsD~~~GRr~  137 (356)
                      ..+|+.++...+..+++.+....+....+.++.+++  +.++.. +.+.     .+..++..++.++.|+++||+ |||+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~   95 (438)
T PRK09952         18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKR   95 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHH
Confidence            344566677777777777776655444455566555  666653 3332     234455668888899999998 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 018406          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (356)
Q Consensus       138 ~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~  217 (356)
                      ++.++.+++.++.++++++.+....                    .-.....+++.|++.|++.|+..+....++.|.+|
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p  155 (438)
T PRK09952         96 MLMLTVWMMGIATALIGLLPSFSTI--------------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP  155 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHH--------------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC
Confidence            9999999999998888775310000                    00012357889999999999999999999999999


Q ss_pred             CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--------hcchhHHHHHHHHHHH
Q 018406          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM--------EHGWGSAFGALAIAMG  270 (356)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~--------~~gw~~~f~i~~~~~~  270 (356)
                      +++      |+...+..+.+..+|..++..+..++..        ..|||+.|.+.++..+
T Consensus       156 ~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l  210 (438)
T PRK09952        156 KNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL  210 (438)
T ss_pred             CCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence            876      8888888888888888888766665542        4689999988766543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.54  E-value=1.4e-13  Score=130.73  Aligned_cols=172  Identities=13%  Similarity=0.125  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVN---MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~---l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      +.++...++...++|.+--+   ..+++.++.++|.++.+.+.+++.+++.++-.+.|.++||. +.|..+.+++++..+
T Consensus        28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai  106 (448)
T COG2271          28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI  106 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence            67777778888888876554   45688889999999999999999999999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      ..+++.++.                            +...+.+..++.|+.+|.-.|+....++..|+.++      ||
T Consensus       107 ~nil~Gfs~----------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG  152 (448)
T COG2271         107 VNILFGFSP----------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RG  152 (448)
T ss_pred             HHHHHhhhh----------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cC
Confidence            888888764                            47788888899999999999999999999999888      99


Q ss_pred             hHHHHHHHHHHHHHHHHHHHH--HHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          229 RFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       229 ~~~~~~~~~~~iG~~i~p~i~--~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      +..++++.+-|+|+++.|.+.  +++..+.+|+.+|++++++.++..++++.
T Consensus       153 ~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~  204 (448)
T COG2271         153 TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF  204 (448)
T ss_pred             ceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999  89988889999999999986655544443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.53  E-value=1.5e-12  Score=126.98  Aligned_cols=152  Identities=13%  Similarity=0.041  Sum_probs=130.5

Q ss_pred             HHHHHHHHHhcCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 018406           90 VNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN  168 (356)
Q Consensus        90 ~~l~~yl~~~~~~s~~~-a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  168 (356)
                      +++..|+.+++|++..+ .+.+.+++..++.++.+++|+++||+ |-|+++.++.+...+..+++.++.           
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~-----------  113 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT-----------  113 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH-----------
Confidence            34566899999999999 99999999999999999999999998 999999999999999888888753           


Q ss_pred             ccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 018406          169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL  248 (356)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i  248 (356)
                                       +...+.+.|++.|++.|+.. ....+++..||+++      |+++.+++..+..+|.++++.+
T Consensus       114 -----------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L  169 (511)
T TIGR00806       114 -----------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVL  169 (511)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence                             47889999999999999988 99999999999776      9999999999999999999999


Q ss_pred             HHHHHhhcchhHHHH---HHHHHHHHHHHHHHh
Q 018406          249 VVYIQMEHGWGSAFG---ALAIAMGISNMLFFI  278 (356)
Q Consensus       249 ~~~i~~~~gw~~~f~---i~~~~~~i~~~~~~~  278 (356)
                      +++ ...+||++-+.   |..+...+++++-++
T Consensus       170 ~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~  201 (511)
T TIGR00806       170 GQL-LVTLGWISYSTLNIISLVFMTFSVFLALF  201 (511)
T ss_pred             HHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            999 45678986543   444445555544444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.52  E-value=3.5e-12  Score=123.88  Aligned_cols=174  Identities=13%  Similarity=0.142  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIA-IFTTIYL  147 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~-~~~~~~~~~~~G~lsD~~~GRr~~i~-~~~~l~~  147 (356)
                      ..+..++..++..+....+...++.|+.+++|.+..+.+.+.+.. ..+..++++++++ +||+ |||+.++ .+.++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~   93 (393)
T PRK15011         16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV   93 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence            346666667888888777888899999999999999999998765 4566666666666 9998 9988754 4445444


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHH-HHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTV-LYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (356)
                      ++..+..++.                            +...+++. +++.+++ +...+....+..|..+.+.    +.
T Consensus        94 ~~~~~~~~~~----------------------------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~  140 (393)
T PRK15011         94 LACTLFAWNR----------------------------NYFVLLFVGVFLSSFG-STANPQMFALAREHADKTG----RE  140 (393)
T ss_pred             HHHHHHHHhh----------------------------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcc----ch
Confidence            5554444432                            34444444 3444444 4556666777777665443    01


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      .+.+.++.+.+.++|..++|.+++++.++.||++.|++.++..++..+....
T Consensus       141 ~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        141 AVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            2344567788899999999999999999999999998877765554444333

>TIGR00898 2A0119 cation transport protein

Probab=99.52  E-value=3.5e-13  Score=134.92  Aligned_cols=144  Identities=12%  Similarity=0.105  Sum_probs=123.4

Q ss_pred             HHHHhcCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccc
Q 018406           95 FMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (356)
Q Consensus        95 yl~~~~~~s---~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  171 (356)
                      .+.++++++   ..+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.++.+++.              
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~--------------  178 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP--------------  178 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc--------------
Confidence            456789998   88999999999999999999999999998 999999999999888887776642              


Q ss_pred             cccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018406          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  251 (356)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~  251 (356)
                                    +...+++.|++.|++.++..+....++.|.+|++.      |+...+++..+..+|.++++.++.+
T Consensus       179 --------------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~  238 (505)
T TIGR00898       179 --------------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYF  238 (505)
T ss_pred             --------------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          47889999999999999999999999999999877      8888888888889999999987766


Q ss_pred             HHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          252 IQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       252 i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      +.+   ||+.|++.++..++.++..
T Consensus       239 ~~~---wr~~~~~~~i~~~~~~~~~  260 (505)
T TIGR00898       239 IPD---WRWLQLAVSLPTFLFFLLS  260 (505)
T ss_pred             hhH---HHHHHHHHHHHHHHHHHHH
Confidence            543   9999988777655554443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.52  E-value=1.7e-12  Score=142.15  Aligned_cols=156  Identities=15%  Similarity=0.103  Sum_probs=123.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~--~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l  145 (356)
                      .+..+..+...++..+...++...+..++...++.+.  ...+++.+++.++..++++++|+++||+ |||++++++.++
T Consensus         8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~   86 (1146)
T PRK08633          8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF   86 (1146)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence            3344555556666555555555556666666676654  3468888899999999999999999998 999999999887


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      .+++.++..++..                         ..+.+.++++|++.|++.+...+...++++|.+++++     
T Consensus        87 ~~~~~~~~~~~~~-------------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~-----  136 (1146)
T PRK08633         87 EVGLTLLIVLAYY-------------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN-----  136 (1146)
T ss_pred             HHHHHHHHHHHHH-------------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc-----
Confidence            7666655544321                         0147888999999999999999999999999999877     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018406          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQME  255 (356)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~  255 (356)
                       |+.+++++..+.++|.++++.+++++.+.
T Consensus       137 -r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        137 -LSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             -chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence             99999999999999999999999998775

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.51  E-value=4.5e-13  Score=128.31  Aligned_cols=172  Identities=14%  Similarity=0.048  Sum_probs=130.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (356)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l  145 (356)
                      ++++.++......++....++.+..+++.|+++++|.+..+.+.......++..++.+++|+++||+ |||+.+.++..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~  294 (394)
T TIGR00883       216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVL  294 (394)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHH
Confidence            3344566677777777788888888899999889999999999999999999999999999999998 999988766554


Q ss_pred             HHHHHH-HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          146 YLAGLT-GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       146 ~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      ..+..+ .......     .                    .+...+++..++.+++.+...++..++++|.+|++.    
T Consensus       295 ~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~----  345 (394)
T TIGR00883       295 AALLAVPLLMALLD-----S--------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV----  345 (394)
T ss_pred             HHHHHHHHHHHHhc-----C--------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc----
Confidence            443322 2211110     0                    134555666777888888888899999999999877    


Q ss_pred             hhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHH
Q 018406          225 THLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM  269 (356)
Q Consensus       225 ~~r~~~~~~-~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~  269 (356)
                        |++.++. ++++..+|+.++|.+.+++.++.| |++.+++..++.
T Consensus       346 --~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       346 --RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             --eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence              7777776 456667889999999999999888 877666555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09952 shikimate transporter; Provisional

Probab=99.51  E-value=4.4e-12  Score=125.16  Aligned_cols=182  Identities=12%  Similarity=0.004  Sum_probs=130.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (356)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l  145 (356)
                      ++++....++...++..+.+|.+..+++.|+++.+|++......+.........++.+++|+++||+ |||++++++.++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~  325 (438)
T PRK09952        247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI  325 (438)
T ss_pred             HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence            3445445555566777788888889999999999999887665555566667778889999999998 999998888766


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      ..++.+.+.....     ..                   .....+++..++.+++.+...+...++.+|.+|.+.     
T Consensus       326 ~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~-----  376 (438)
T PRK09952        326 GTLSAFPFFMALE-----AQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY-----  376 (438)
T ss_pred             HHHHHHHHHHHHH-----cC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch-----
Confidence            5554433332210     00                   023334445566678878778888999999999876     


Q ss_pred             hhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHHHh
Q 018406          226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       226 ~r~~~~~~-~~~~~~iG~~i~p~i~~~i~~~~--gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                       |++..++ ++++..+|++++|.+.+++.+..  +|...+.+.+++.+++++..+.
T Consensus       377 -r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        377 -RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             -hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence             7777776 44556689999999999998754  3777777776666666555443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.50  E-value=1.6e-12  Score=126.31  Aligned_cols=177  Identities=10%  Similarity=-0.112  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      .+|......++...+...+..+++.|+++++|++..+.+.+.+++.++..++.+++|+++||+ |||+.++.+.++..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL   81 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            467788888888888888888999999999999999999999999999999999999999998 9999998877666554


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      ..........+...                    ......+++++++.+++.+...+....+..|.-++        ++.
T Consensus        82 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~  133 (396)
T TIGR00882        82 FAPFFIYVFGPLLQ--------------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNF  133 (396)
T ss_pred             HHHHHHHHhhhHHH--------------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--------ccc
Confidence            43322111000000                    00123345566777888777777776666554221        233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      .++......++|..++|.+++.+.+ .+|++.|++.+++.++..++.
T Consensus       134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~  179 (396)
T TIGR00882       134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLL  179 (396)
T ss_pred             ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHH
Confidence            4556666778999999999887754 599999988777655544433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.50  E-value=1.5e-12  Score=127.43  Aligned_cols=181  Identities=8%  Similarity=-0.137  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      +..|.+.+..++..++++.+...++.|+++++|++..+.+.+.+.+.++..++++++|+++||+ |||++++++..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            3467777777787787777889999999999999999999999999999999999999999998 999999887666554


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      +...+......+.                        .......+.++.++..+...........+..+...    ++++
T Consensus        89 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g  140 (420)
T PRK09528         89 LFGPFFIYVFAPL------------------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSG  140 (420)
T ss_pred             HHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhcc
Confidence            4432221100000                        00001112222222222222222222222222111    1255


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 018406          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (356)
Q Consensus       229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~  279 (356)
                      ..++..+...++|..++|.+++++.+ .+|++.|++.+++.++.+++.+..
T Consensus       141 ~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~  190 (420)
T PRK09528        141 FEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFA  190 (420)
T ss_pred             ccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcc
Confidence            66677777788999999999998876 489999988776665555444433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.50  E-value=1.9e-12  Score=130.32  Aligned_cols=159  Identities=18%  Similarity=0.260  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchh
Q 018406          106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW  185 (356)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (356)
                      +.+++.+.+.+++.++.++.|+++|++ |||++++++.+++.+|.++++++.                            
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~----------------------------  140 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP----------------------------  140 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh----------------------------
Confidence            348999999999999999999999998 999999999999999999999874                            


Q ss_pred             hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHH
Q 018406          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--HGWGSAFG  263 (356)
Q Consensus       186 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~--~gw~~~f~  263 (356)
                      +..+++++|++.|+|.|+.....+.+++|..|++.      |+...+.+++..++|..++..+ ++...+  .+||..++
T Consensus       141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~-~~~~~~~~~~Wr~~~~  213 (513)
T KOG0254|consen  141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCI-NYGTSKVYAGWRIPLG  213 (513)
T ss_pred             hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHH-hhhhccCCccHHHHHH
Confidence            58999999999999999999999999999999888      9999999999999999999644 444443  48998877


Q ss_pred             HHHHHHHHHHHHHHh--hcccccccCCCCChhHHHHHHHHHH
Q 018406          264 ALAIAMGISNMLFFI--GTPLYRHRLPGGSPLTRVAQVLVAA  303 (356)
Q Consensus       264 i~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~vl~~~  303 (356)
                      +..+..++..+.+++  ..|++..+   .....+..+++...
T Consensus       214 ~~~i~~~~~~~~~~~~pesp~~L~~---~g~~~~a~~~l~~l  252 (513)
T KOG0254|consen  214 LALIPAVILALGMLFLPESPRWLIE---KGRLEEAKRSLKRL  252 (513)
T ss_pred             HHHHHHHHHHHHHHhCCCChHHHHH---cCChHHHHHHHHHH
Confidence            766655444444322  23333322   33444445554443

>PRK03699 putative transporter; Provisional

Probab=99.49  E-value=3.1e-12  Score=124.22  Aligned_cols=171  Identities=15%  Similarity=0.153  Sum_probs=130.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      .++...+..++..+..+++..+++.|+++.+|++..+++...+.+.++..++.+++|+++||+ |||+.+.....+..++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL  284 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence            455555666666677778889999999999999999999999999999999999999999998 9999888777665554


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      .+++....                            +...+.+..++.|++.++..+...++..+..+.+       ++.
T Consensus       285 ~~~~~~~~----------------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~  329 (394)
T PRK03699        285 MYLFVNTD----------------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPK  329 (394)
T ss_pred             HHHHHHcC----------------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHH
Confidence            44433221                            2334445566778877777777777888877643       344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      ..++.+....+|..++|.+.+++.+..|++..|++..++.+++++..
T Consensus       330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  376 (394)
T PRK03699        330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC  376 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence            55667777889999999999999999999989887777665554433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.49  E-value=3.3e-12  Score=132.73  Aligned_cols=131  Identities=9%  Similarity=0.023  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHH
Q 018406          111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL  190 (356)
Q Consensus       111 ~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (356)
                      ..+..++..++.+++|+++||+ |||++++++.++..++.+++.+..                            +...+
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~----------------------------s~~~l  651 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN----------------------------SESAM  651 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc----------------------------cHHHH
Confidence            4455678889999999999998 999999999888888777666542                            23445


Q ss_pred             HHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406          191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG  270 (356)
Q Consensus       191 ~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~  270 (356)
                      ++.+++.+++.++..+...++.+|++|++.      |++.+++.+....+|++++|.+++++.+. +...+|.+.+++.+
T Consensus       652 l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ll  724 (742)
T TIGR01299       652 IALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALA  724 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Confidence            556667777777778889999999999887      99999999999999999999999988764 34566766666655


Q ss_pred             HHHHHHH
Q 018406          271 ISNMLFF  277 (356)
Q Consensus       271 i~~~~~~  277 (356)
                      ++.++.+
T Consensus       725 l~~ll~~  731 (742)
T TIGR01299       725 CGGLLAL  731 (742)
T ss_pred             HHHHHHH
Confidence            5444433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.49  E-value=3e-12  Score=121.84  Aligned_cols=186  Identities=14%  Similarity=0.090  Sum_probs=151.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      +.++|+++...+.....-+.+ .+...+..++.+++|+|..|.++++.+..+...+.-++-|++.||+ |.|++..++.+
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW-~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~   87 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVW-TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML   87 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHH-HHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence            455666666655555544444 4566678888899999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      +.++-.+.++++...                         .+.+.+++..++.|++ |+..+...++.+..||+++    
T Consensus        88 l~~IP~~~~~~a~~~-------------------------~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~----  137 (417)
T COG2223          88 LLLIPCLGLAFAVTY-------------------------PSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK----  137 (417)
T ss_pred             HHHHHHHHHHHHccC-------------------------CchHHHHHHHHHHhcc-cceehcccccccccCChhh----
Confidence            999888888887531                         1346788888899998 5667788889999999887    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHHHHHhhcccccc
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTPLYRH  285 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g---w~~~f~i~~~~~~i~~~~~~~~~~~~~~  285 (356)
                        .|.+.+++. ..|+|..+..+++..+....|   |+...++..+.+++..+.+++..+..++
T Consensus       138 --qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~  198 (417)
T COG2223         138 --QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPE  198 (417)
T ss_pred             --hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence              899999999 899999999999999988888   8888887777777767666666554444

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.49  E-value=6.3e-13  Score=133.89  Aligned_cols=167  Identities=14%  Similarity=0.168  Sum_probs=135.1

Q ss_pred             HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccC
Q 018406           98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG  177 (356)
Q Consensus        98 ~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (356)
                      +.++.+.....+..+++.++..+|++++|+++|++ |||++++++.++.+++.++.+++.                    
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~--------------------  169 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP--------------------  169 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence            55677888899999999999999999999999996 999999999999999998887763                    


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018406          178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (356)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g  257 (356)
                              ++..+++.|++.|++.++...+...+++|.++++.      |+.+..+ ......++.+++.+++|+..  +
T Consensus       170 --------~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~  232 (521)
T KOG0255|consen  170 --------NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--D  232 (521)
T ss_pred             --------cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--h
Confidence                    58999999999999999999999999999999988      8888888 77778888889989999887  8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh--hcccccccCCCCChhHHHHHHHHHHHh
Q 018406          258 WGSAFGALAIAMGISNMLFFI--GTPLYRHRLPGGSPLTRVAQVLVAAFR  305 (356)
Q Consensus       258 w~~~f~i~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~vl~~~~~  305 (356)
                      |||.+++..+..++.++..++  ..+++...+   +...+..+.+....+
T Consensus       233 Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~---g~~~~a~~~l~~~a~  279 (521)
T KOG0255|consen  233 WRWLFWIISIPSGLFLLLWFLPPESPRWLLSK---GRIDEAIKILKKIAK  279 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCcChHHHHHc---CchHHHHHHHHHHHh
Confidence            999999877776555444222  233443332   233455556555544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.48  E-value=2.5e-12  Score=122.39  Aligned_cols=169  Identities=15%  Similarity=0.076  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~  150 (356)
                      .+......++..+..+.+....+.|. +++|.+..+.+.+...+.++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  284 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM  284 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence            34444444444444444555556664 56889988889999999999999999999999998 99999998888888777


Q ss_pred             HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (356)
                      +++.....                          .....+++..++.+++.+...+..+.+.+|.+|+++      +++.
T Consensus       285 ~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~  332 (377)
T TIGR00890       285 AAMLFIPM--------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAAN  332 (377)
T ss_pred             HHHHHccc--------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhH
Confidence            66554311                          012334455667788878777788889999999877      8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN  273 (356)
Q Consensus       231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~  273 (356)
                      +++++....+|..++|.+.+++.+..||++.|.+.+++.++++
T Consensus       333 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       333 YGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999988777665543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.48  E-value=6e-12  Score=122.09  Aligned_cols=170  Identities=13%  Similarity=0.069  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhh
Q 018406           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT  158 (356)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~  158 (356)
                      ++..+.++.+..+++.|+.+ .|++  ..+.....+.++..++.++.|+++||+ |||+.+.++.++..++.+.+.... 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-  300 (399)
T PRK05122        226 ALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP-  300 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc-
Confidence            33445555666777777753 4553  345566677788888999999999998 999999888887777766555431 


Q ss_pred             ccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHH
Q 018406          159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV  238 (356)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~  238 (356)
                                                 +...++++.++.|++.++..+.......|.+|++.      +++.+++++...
T Consensus       301 ---------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~  347 (399)
T PRK05122        301 ---------------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFL  347 (399)
T ss_pred             ---------------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence                                       34556677788999988877777777888888665      899999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccccc
Q 018406          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR  286 (356)
Q Consensus       239 ~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~  286 (356)
                      .+|..+++.+.+++.+..||++.|++.+++.++++++.....++.+++
T Consensus       348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (399)
T PRK05122        348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRA  395 (399)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            999999999999999999999999988777776666555544444433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.48  E-value=5.2e-12  Score=118.80  Aligned_cols=171  Identities=20%  Similarity=0.244  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAG  149 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~-~i~~~~~l~~~g  149 (356)
                      ++......++..........+++.|+.+.+|.+..+.+.......++..++.++.|+++||+ |||+ .+.++.++..++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~  255 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALG  255 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Confidence            34444445555666666777788888877799999999999999999999999999999998 9999 999998888888


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      .+.+....                            +...+++..++.+++.+...+....+..|.+|+++      |++
T Consensus       256 ~~~~~~~~----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~  301 (352)
T cd06174         256 LLLLALAP----------------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGT  301 (352)
T ss_pred             HHHHHHhc----------------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHH
Confidence            77766532                            35667788889999999999999999999999866      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      .++.++...++|..+++.+.+++.+..+|++.|.+.+++.+++.++.
T Consensus       302 ~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         302 ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998999999998888776665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00896 CynX cyanate transporter

Probab=99.47  E-value=1.1e-12  Score=125.39  Aligned_cols=146  Identities=16%  Similarity=0.165  Sum_probs=120.2

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 018406           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (356)
Q Consensus        90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  169 (356)
                      ..+...+.+++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.+.. ...            
T Consensus        20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~------------   85 (355)
T TIGR00896        20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP------------   85 (355)
T ss_pred             cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc------------
Confidence            4455567889999999999999999999999999999999998 99999999988877776655 221            


Q ss_pred             cccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018406          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (356)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~  249 (356)
                                      +...+++.|++.|+|.+...+..+....|.++ ++      |+...++++.+.++|..+++.+.
T Consensus        86 ----------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~  142 (355)
T TIGR00896        86 ----------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAAT  142 (355)
T ss_pred             ----------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHH
Confidence                            36677889999999998888888888888886 34      78999999999999999999998


Q ss_pred             HHHHhhcc--hhHHHHHHHHHHHHH
Q 018406          250 VYIQMEHG--WGSAFGALAIAMGIS  272 (356)
Q Consensus       250 ~~i~~~~g--w~~~f~i~~~~~~i~  272 (356)
                      +++.+..+  |++.|.+.+++.++.
T Consensus       143 ~~l~~~~~~~w~~~f~~~~~~~~~~  167 (355)
T TIGR00896       143 VPLAQHSGGHWQQALAWWALPALLA  167 (355)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            88877653  888887665544333

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.47  E-value=1e-11  Score=124.33  Aligned_cols=177  Identities=14%  Similarity=0.102  Sum_probs=132.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cchhHH-HHH
Q 018406           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWT-IAI  141 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~----~GRr~~-i~~  141 (356)
                      +||+.+.++...+...+..+.....++.|+. +.|.+..+.+....+...  +++.+++|+++||+    +|||+. +++
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~ll~   86 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWLLA   86 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence            3444566666666676777666677777765 568898888876322222  36889999999995    288886 556


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCh
Q 018406          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (356)
Q Consensus       142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~  221 (356)
                      +.++..++.+.+++..      +                   ..+.+.+.+.+++.+++.+...+...++.+|.+|+++ 
T Consensus        87 ~~i~~~~~~~~~a~~~------~-------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~-  140 (491)
T PRK11010         87 TQLLLLVAIAAMGFLE------P-------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE-  140 (491)
T ss_pred             HHHHHHHHHHHHHHcC------C-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh-
Confidence            6666666666665532      1                   1256778888889999999989999999999999776 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHH
Q 018406          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~-~~gw~~~f~i~~~~~~i~~~~~~  277 (356)
                           |+...++...+..+|..+++.+..++.+ ..|||..|++.+++.++..+..+
T Consensus       141 -----rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~  192 (491)
T PRK11010        141 -----RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL  192 (491)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence                 8999999999999999999999999988 46999999988877665544433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.47  E-value=7.5e-12  Score=137.34  Aligned_cols=133  Identities=17%  Similarity=0.087  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH--HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCc
Q 018406          105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI--YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA  182 (356)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (356)
                      ...+++.+++.+...++.+++|+++||+ |||+++.....+  .+....+..+..                         
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~-------------------------  105 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL-------------------------  105 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence            3467777889999999999999999998 999986442222  222221222211                         


Q ss_pred             chhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 018406          183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF  262 (356)
Q Consensus       183 ~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f  262 (356)
                        .+.+.++++++++|++.+...+...+++.|++++++      ++.++++.+.+.++|.++||.+++++....+|++.|
T Consensus       106 --~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~  177 (1140)
T PRK06814        106 --NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILV  177 (1140)
T ss_pred             --hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence              157889999999999999999999999999999877      999999999999999999999999999999999888


Q ss_pred             HHHHHHHHH
Q 018406          263 GALAIAMGI  271 (356)
Q Consensus       263 ~i~~~~~~i  271 (356)
                      .+.+++.++
T Consensus       178 ~~~~~~~~~  186 (1140)
T PRK06814        178 ALLMGIAVL  186 (1140)
T ss_pred             HHHHHHHHH
Confidence            444443333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.46  E-value=7.2e-12  Score=125.04  Aligned_cols=150  Identities=16%  Similarity=0.119  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 018406           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ  166 (356)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~  166 (356)
                      ++..+++.|+++++|++..+++.+.+...++..++.+++|+++||+ |||++++++.++..++.+++.....        
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~--------  363 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG--------  363 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence            4566789999889999999999999999999999999999999997 9999988877665554443332110        


Q ss_pred             CCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 018406          167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (356)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p  246 (356)
                                        ...+.+.+..++.++...+..+..++++.|.+|++.      +++.+++++....+|+.++|
T Consensus       364 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp  419 (496)
T PRK03893        364 ------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAP  419 (496)
T ss_pred             ------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHH
Confidence                              123333333444333333445677788899999776      89999999998999999999


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHH
Q 018406          247 TLVVYIQMEHGWGSAFGALAIAM  269 (356)
Q Consensus       247 ~i~~~i~~~~gw~~~f~i~~~~~  269 (356)
                      ++.+++.+..||+..+.+.+++.
T Consensus       420 ~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        420 ILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             HHHHHHhccCChHHHHHHHHHHH
Confidence            99999999999887776544443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.46  E-value=1.2e-11  Score=118.51  Aligned_cols=159  Identities=11%  Similarity=0.070  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018406           83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (356)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~  162 (356)
                      ...+....+++.|+++++|.+..+.+.+.....+...++.+++|+++||+ |||+++.++.++..++.+......     
T Consensus       213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~-----  286 (375)
T TIGR00899       213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN-----  286 (375)
T ss_pred             HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH-----
Confidence            33344455678888889999999988888777777788889999999998 999998887766554443333221     


Q ss_pred             CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 018406          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~  242 (356)
                                             +.+.+++..++.|++.+...+....+..|.+|++       +++.+++++...++|.
T Consensus       287 -----------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~  336 (375)
T TIGR00899       287 -----------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTGRVGW  336 (375)
T ss_pred             -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHH
Confidence                                   3455566677778888877777778888888743       5688899999899999


Q ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406          243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       243 ~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~  277 (356)
                      .++|.+.+++.+..||+..|++.+++.+++.++..
T Consensus       337 ~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       337 IIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999888777666655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.45  E-value=2.3e-12  Score=129.77  Aligned_cols=150  Identities=15%  Similarity=0.127  Sum_probs=116.5

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 018406           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (356)
Q Consensus        90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  169 (356)
                      .....|+.+++|-+ ....++.+.+.++..+..++.|.|||.+ |||+.++++.++.++|.++++.+.            
T Consensus        64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------  129 (599)
T PF06609_consen   64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------  129 (599)
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------
Confidence            34556888888876 5567788889999999999999999997 999999999999999999988652            


Q ss_pred             cccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018406          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (356)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~  249 (356)
                                      +...++++..+.|+|.|... .....++|..|.+.      |.....+..+...+...+++.++
T Consensus       130 ----------------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia  186 (599)
T PF06609_consen  130 ----------------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIA  186 (599)
T ss_pred             ----------------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHH
Confidence                            57889999999999976654 45666899999776      55555555444444455667666


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          250 VYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       250 ~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      ..+..+.+|||.|++.++...+++++.
T Consensus       187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~  213 (599)
T PF06609_consen  187 QLFAAHSGWRWIFYIFIIWSGIALVLI  213 (599)
T ss_pred             HHhccCCCcchHHHHHHHHHHHHHHHH
Confidence            666666789999999888766665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00901 2A0125 AmpG-related permease

Probab=99.44  E-value=1.2e-11  Score=118.11  Aligned_cols=157  Identities=13%  Similarity=0.111  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cchhHHH-HHHHHHHHHHHHHHHHHhhcccc
Q 018406           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVF  162 (356)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~----~GRr~~i-~~~~~l~~~g~~~~~~~~~~~~~  162 (356)
                      +.......+.+++|++..+.+..... .+...+ .+++|+++||+    +||||.+ +++.++..+....+.+...    
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~----   79 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP----   79 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----
Confidence            33444455567899999999888655 333333 88999999997    4899975 5556666555545443210    


Q ss_pred             CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 018406          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~  242 (356)
                                           ..+.+.+++..++.+++.+...+...++++|.+|+++      |+.+.++...+.++|.
T Consensus        80 ---------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~  132 (356)
T TIGR00901        80 ---------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGM  132 (356)
T ss_pred             ---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHH
Confidence                                 1245555555667778888888999999999998766      8999999999999999


Q ss_pred             HHHHHHHHHHHhhcc--------hhHHHHHHHHHHHHHHHHHH
Q 018406          243 IVAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       243 ~i~p~i~~~i~~~~g--------w~~~f~i~~~~~~i~~~~~~  277 (356)
                      ++++.+++++....|        ||..|++.+++.++.+++.+
T Consensus       133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            999999999888888        99999888777665554433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.44  E-value=1.4e-11  Score=117.63  Aligned_cols=179  Identities=13%  Similarity=0.020  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL  147 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~-i~~~~~l~~  147 (356)
                      +.++...+..++.....+.+..+++.|+++.+|.+..+.+.+.....++..++.+++|+++||+ |||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            4567777777788888888888899999999999999999999999999999999999999998 98861 111111111


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      ++.+...+.......                      .......+..++.+.+..+..+...++.+|.+|++.      |
T Consensus       294 ~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  345 (399)
T TIGR00893       294 IAGLVLSLLMFATNY----------------------VNIPYAALALVALGFFGLGAGAIGWALISDNAPGNI------A  345 (399)
T ss_pred             HHHHHHHHHHHHhcc----------------------chhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhH------H
Confidence            221111111000000                      011222233333333333367889999999999877      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHH
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~  276 (356)
                      ++.+++++...++|..++|.+.+++.+..| |++.|.+.+++.+++.+..
T Consensus       346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988 9988888777766555444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.44  E-value=1.3e-11  Score=122.28  Aligned_cols=177  Identities=16%  Similarity=0.121  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHH-HHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIY  146 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~-GRr~~i-~~~~~l~  146 (356)
                      +.+|...+..++.....+++..++|.|+++++|++..+++....++.++..++.+++|+++||+. |||+.. .+...+.
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~  332 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  332 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence            44677777777777777888889999999999999999888888888899999999999999971 334332 2222233


Q ss_pred             HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (356)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (356)
                      .++.+.+.+..      .                    .+....++..++.|.+..+.......+..|.+|++.      
T Consensus       333 ~~~~~~~~~~~------~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------  380 (452)
T PRK11273        333 TIATIVYWLNP------A--------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------  380 (452)
T ss_pred             HHHHHHHHHhc------c--------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------
Confidence            33332222210      0                    023333344444554433333334456679999877      


Q ss_pred             hhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406          227 LDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       227 r~~~~~~~~~~~~iG~~i-~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~  277 (356)
                      +++.+++++...++|+.+ +|.+.+++.+..||++.|++.+++.+++++...
T Consensus       381 ~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        381 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            899999998888888665 799999999999999999887776665554443

>PTZ00207 hypothetical protein; Provisional

Probab=99.43  E-value=3.7e-11  Score=121.60  Aligned_cols=173  Identities=9%  Similarity=-0.004  Sum_probs=125.2

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      .++|..+...+....+... .|++.. ....+++++|++..+.+++.++.... .++.+++|+++||+ |||++++++.+
T Consensus        24 ~~Rw~~lva~~~~~~~~g~-~y~fsv-~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~-G~R~vllig~l   99 (591)
T PTZ00207         24 PRRFALLVLGAFCSICTSF-MYAFNL-ISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYL-GPRPIFVLSMT   99 (591)
T ss_pred             cchHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            4556555544544444433 334443 44567899999999998888774433 45666789999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      ++.+|.++++++... .. .                    .+.+.+++.+++.|+|.+...+.....+.+.|| ++    
T Consensus       100 l~~iG~ll~ala~~~-~i-~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~----  152 (591)
T PTZ00207        100 VFCLGTLLFALTFQE-VI-E--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN----  152 (591)
T ss_pred             HHHHHHHHHHHHhcc-cc-c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh----
Confidence            999999998886320 00 0                    157888999999999999888888888999997 33    


Q ss_pred             hhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406          225 THLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i-~p~i~~~i~~~~gw~~~f~i~~~~~~i~  272 (356)
                        ||.+.++......+|+++ +++..+++.+  +|++.|++.+++.++.
T Consensus       153 --RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv  197 (591)
T PTZ00207        153 --RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVV  197 (591)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHH
Confidence              899999999999999975 5555555543  4666666665554433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.43  E-value=3.6e-11  Score=117.10  Aligned_cols=165  Identities=15%  Similarity=0.126  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cchhH-HHHHHHHHHHHHHH
Q 018406           77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYW-TIAIFTTIYLAGLT  151 (356)
Q Consensus        77 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~----~GRr~-~i~~~~~l~~~g~~  151 (356)
                      ..+...+.+.-....++.|+++ .|++..+.+.+..+...  .+..+++|+++||+    +|||| .++++.++..++..
T Consensus         7 l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~   83 (402)
T PRK11902          7 LGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA   83 (402)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence            3444444444456678888875 59999999988666655  68899999999996    27765 67777777776666


Q ss_pred             HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (356)
                      .+.+..      +                   ..+.+.+++..++.+++.+...+...++.+|.+|+++      |+++.
T Consensus        84 ~l~~~~------~-------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~  132 (402)
T PRK11902         84 AMAFCP------P-------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGA  132 (402)
T ss_pred             HHHhcC------c-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHH
Confidence            655431      0                   0145556666666778888888999999999999876      89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHH
Q 018406          232 NFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       232 ~~~~~~~~iG~~i~p~i~~~i~~~-~gw~~~f~i~~~~~~i~~~~  275 (356)
                      ++...+..+|..+++.++.++.+. .||+..|++.+++.++..+.
T Consensus       133 ~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        133 AVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            998888899999999888888885 49999999877766554443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=8.4e-13  Score=124.36  Aligned_cols=163  Identities=13%  Similarity=0.086  Sum_probs=139.9

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCC
Q 018406          100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC  179 (356)
Q Consensus       100 ~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (356)
                      ++-++.+.+++.....+...+..++.|.+.||+ |+|-.+++|.+++.+.++++++..                      
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~----------------------  157 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN----------------------  157 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc----------------------
Confidence            455678889999999999999999999999997 999999999999999999998853                      


Q ss_pred             CCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 018406          180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG  259 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~  259 (356)
                            .+++++++|.++|+|.++...+..+++||.||++.     +|++++++..-...+|..+||.++|.+.+..|+.
T Consensus       158 ------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~  226 (464)
T KOG3764|consen  158 ------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKS  226 (464)
T ss_pred             ------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCc
Confidence                  57899999999999999999999999999999887     5899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccccc---CCCCChhHHH
Q 018406          260 SAFGALAIAMGISNMLFFIGTPLYRHR---LPGGSPLTRV  296 (356)
Q Consensus       260 ~~f~i~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~  296 (356)
                      .+|.+.++++++...+.++..+.++..   .+++.+..++
T Consensus       227 aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~L  266 (464)
T KOG3764|consen  227 APFLVLAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSL  266 (464)
T ss_pred             CcHHHHHHHHHHHHHHHHheeCccccCccccccCccHHHH
Confidence            999999888777766655544433322   2444555544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.43  E-value=2.2e-11  Score=118.38  Aligned_cols=167  Identities=10%  Similarity=0.010  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (356)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~  152 (356)
                      .+....++.....+.+..+++.|+.+ .|++..+.+.+...+.++..++.++.|+++||+ |||+.+.++.+...++.+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~  301 (406)
T PRK11551        224 LLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAA  301 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence            33344444555666677778888764 799999999999999999999999999999998 9999988766655555444


Q ss_pred             HHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHH
Q 018406          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~  232 (356)
                      +....                            +...+++..++.|++.++..+...++..|.+|++.      |++..+
T Consensus       302 ~~~~~----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g  347 (406)
T PRK11551        302 LAAAP----------------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVG  347 (406)
T ss_pred             HHhcC----------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhh
Confidence            33221                            23445555667777777778888899999999887      899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHH
Q 018406          233 FFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNML  275 (356)
Q Consensus       233 ~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~  275 (356)
                      +++....+|..++|.+.+++.+..+ |...+++...+.+++++.
T Consensus       348 ~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  391 (406)
T PRK11551        348 AAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALA  391 (406)
T ss_pred             HHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988754 555555554444444333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.43  E-value=4.2e-11  Score=116.43  Aligned_cols=173  Identities=14%  Similarity=0.034  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~  150 (356)
                      .|.+....++..+.++++..+++.|+.+ +|++..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..++.
T Consensus       207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~  284 (393)
T PRK09705        207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF  284 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence            4555555566677888888899999975 899999999999999999999999999999997 99999888877776666


Q ss_pred             HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (356)
                      +++....       .                    +...++  .++.|++.++..+.......+.+++++     .+++.
T Consensus       285 ~~~~~~~-------~--------------------~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~  330 (393)
T PRK09705        285 CGFIWLP-------L--------------------QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKL  330 (393)
T ss_pred             HHHHHcc-------c--------------------hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHH
Confidence            5443221       0                    111122  234577777777777667778776432     27889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHhh
Q 018406          231 FNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG  279 (356)
Q Consensus       231 ~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~~~  279 (356)
                      +++.+...++++.++|.+.+++.+..| |...|.+.+++.++.+++....
T Consensus       331 ~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK09705        331 VAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRF  380 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999887 7788887776666555554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.42  E-value=1.7e-11  Score=120.83  Aligned_cols=178  Identities=15%  Similarity=0.097  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIYL  147 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G--Rr~~i~~~~~l~~  147 (356)
                      .+|.+....++..+.++++..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+.+  |++......+..+
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~  323 (434)
T PRK11663        244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence            45666666666666777788889999988899999999999999999999999999999999732  2333222222222


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      +..+.+.....                          .+....++..++.|++..+.........+|.++++.      +
T Consensus       324 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  371 (434)
T PRK11663        324 LSVGSLWLMPF--------------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------A  371 (434)
T ss_pred             HHHHHHHHccc--------------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------H
Confidence            22211111100                          012223333344444433333334456788888766      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~  279 (356)
                      +...++.+...++|..++|.+.+++.+..||...|.+.+++.+++.+..+..
T Consensus       372 g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  423 (434)
T PRK11663        372 GAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPF  423 (434)
T ss_pred             HhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988877766665544443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.42  E-value=1.2e-11  Score=119.21  Aligned_cols=165  Identities=13%  Similarity=0.062  Sum_probs=125.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (356)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l  145 (356)
                      ++|+.....+....+.....+++..+++.|+.+++|++..+.+.+.....++..++.++.|+++||+ |||+.+.++.++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~  313 (405)
T TIGR00891       235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLA  313 (405)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHH
Confidence            3444444444444455555556777889999999999999999999999999999999999999998 999998887765


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      ..+..+.+....                           .+...+.++.++.+++.++..+..++++.|.+|++.     
T Consensus       314 ~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  361 (405)
T TIGR00891       314 GQLLIIPVFAIG---------------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ-----  361 (405)
T ss_pred             HHHHHHHHHHhC---------------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch-----
Confidence            533222222110                           134455555566666666777788899999999877     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHH
Q 018406          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA  264 (356)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i  264 (356)
                       +++.+++.+...++|..++|.+.+++.+..| |...+..
T Consensus       362 -~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       362 -RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             -hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence             8999999999999999999999999999988 7766554

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.41  E-value=2.1e-11  Score=118.26  Aligned_cols=164  Identities=12%  Similarity=0.042  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 018406           80 AERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (356)
Q Consensus        80 ~~~~~~~~~~~~l~~yl~~~~~~s~~---~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~  156 (356)
                      +..+....+...++.|+.+..+....   ..+.+..+..++..++.++.|+++||+ |||+++.++.++..++.+++...
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~  308 (408)
T PRK09874        230 IIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFV  308 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHh
Confidence            33344444556667777665443222   234455566677778888999999998 99999998887776666554432


Q ss_pred             hhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHH
Q 018406          157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL  236 (356)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~  236 (356)
                      .                            +.+.+++.+++.|++.+...+...++..+..+++.      +++.+++++.
T Consensus       309 ~----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~  354 (408)
T PRK09874        309 Q----------------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQS  354 (408)
T ss_pred             c----------------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHH
Confidence            1                            35566777888899999888888888888887766      8899999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       237 ~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      ...+|..++|.+++++.+..||++.|++.+++.+++.+....
T Consensus       355 ~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        355 FRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888877766655444

>PRK15075 citrate-proton symporter; Provisional

Probab=99.41  E-value=3.4e-11  Score=118.57  Aligned_cols=160  Identities=16%  Similarity=0.082  Sum_probs=111.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~  147 (356)
                      |+..+..+...++....++++..+++.|+++.+|++..+++.....+.++..++.+++|+++||+ |||++++++.++.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~  315 (434)
T PRK15075        237 WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAI  315 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            44333334444556667778888899999988999999888888888888999999999999998 99998877655433


Q ss_pred             HHHHH-HHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406          148 AGLTG-ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (356)
Q Consensus       148 ~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (356)
                      +..++ ......     .                    .....+.+..++.+++.+...+....+..|.+|++.      
T Consensus       316 ~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------  364 (434)
T PRK15075        316 LTAYPALSWLVA-----A--------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------  364 (434)
T ss_pred             HHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------
Confidence            22211 111110     0                    012233334445556666666666788899999887      


Q ss_pred             hhhHHHHHH-HHHHHHHHHHHHHHHHHHhhcchh
Q 018406          227 LDRFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWG  259 (356)
Q Consensus       227 r~~~~~~~~-~~~~iG~~i~p~i~~~i~~~~gw~  259 (356)
                      |+..+++.+ ++..+++.++|.+.+++.+..|+.
T Consensus       365 rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        365 RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            788888754 444556788999999999988853

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.41  E-value=8.2e-12  Score=122.27  Aligned_cols=160  Identities=13%  Similarity=0.095  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 018406           83 MAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM  159 (356)
Q Consensus        83 ~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~  159 (356)
                      +.+......++.|+.+.+   +.+....+.+.++..++..++.+++|+++||+ |||+.+.++.++..++.+++.++.  
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~--  313 (420)
T PRK09528        237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT--  313 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc--
Confidence            333334445677766543   55666778888888888899999999999998 999999988888888777665532  


Q ss_pred             cccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHH-HHHHH
Q 018406          160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSV  238 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~-~~~~~  238 (356)
                                                +.+.+++.+++.+++.+........++.|.+|++.      ++...+. ++...
T Consensus       314 --------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~  361 (420)
T PRK09528        314 --------------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAK  361 (420)
T ss_pred             --------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHH
Confidence                                      35667777888888887777777888999998766      6666544 67778


Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406          239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       239 ~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~  277 (356)
                      .+|..+++.+.|++.+..||+..|.+.+++.++..++.+
T Consensus       362 ~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        362 QLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999987777655544433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.40  E-value=5.4e-11  Score=114.97  Aligned_cols=152  Identities=16%  Similarity=0.133  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccC
Q 018406           84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM  163 (356)
Q Consensus        84 ~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~  163 (356)
                      .+.....+++.|+++ .|.+....+...+...++..++.++.|+++||+ |||+++.++.++..++.+... .       
T Consensus       215 ~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~-------  284 (381)
T PRK03633        215 VLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S-------  284 (381)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h-------
Confidence            333445667888764 699999999999999999999999999999998 999999888777776654332 1       


Q ss_pred             CCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 018406          164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI  243 (356)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~  243 (356)
                                             ...++..+++.+++.++..+...+...|..|+++      ++...+.++...++|..
T Consensus       285 -----------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~  335 (381)
T PRK03633        285 -----------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSL  335 (381)
T ss_pred             -----------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHH
Confidence                                   1123345566677666677888888888887654      66677777788899999


Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406          244 VAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (356)
Q Consensus       244 i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~  274 (356)
                      ++|.+.|++.++.||++.|.+.+++.++..+
T Consensus       336 igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~  366 (381)
T PRK03633        336 LGPSFTAMLMQNYSDNLLFIMIASVSFIYLL  366 (381)
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence            9999999999999999999887777654443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.40  E-value=3.6e-11  Score=116.36  Aligned_cols=162  Identities=7%  Similarity=-0.070  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH-HHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT-IYLAGL  150 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~-l~~~g~  150 (356)
                      +.+.+..++..+++-....+++.|+ +++|++..+.+.+.+.+.++..+++++.|+++||+ ||+........ ...+..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            3344445555555544556677777 57899999999999999999999999999999998 98543321111 111111


Q ss_pred             HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (356)
                      +.+....                           .+.+.+++.+++.+.+.+...+...++..+ +. +      +++..
T Consensus        85 ~~~~~~~---------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~-~------~~~~~  129 (382)
T TIGR00902        85 AAFSAGA---------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANT-WQ-K------QFGLD  129 (382)
T ss_pred             HHHHHhh---------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHH-HH-H------HcCCC
Confidence            1111111                           147788888988888887777776666543 22 2      36777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG  270 (356)
Q Consensus       231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~  270 (356)
                      ++......++|..++|.+++++.+..||++.|++..++.+
T Consensus       130 ~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~  169 (382)
T TIGR00902       130 YGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA  169 (382)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence            8888888999999999999999999999999887655533

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.39  E-value=2.8e-11  Score=118.78  Aligned_cols=175  Identities=11%  Similarity=0.058  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s--------~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~  143 (356)
                      +..++..++..........+++.|+.+ .|.+        ....+.+.++..+...++.++.|+++||+ |||+++.++.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~  288 (418)
T TIGR00889       211 AIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSL  288 (418)
T ss_pred             eeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence            334444444444444445666777753 4544        35668888888889999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (356)
Q Consensus       144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~  223 (356)
                      ++..++..++.....      .                  ......+++..++.|++.+...+....+++|.+|++.   
T Consensus       289 ~~~~v~~~l~~~~~~------~------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~---  341 (418)
T TIGR00889       289 VAWALRFGFFAYGDP------E------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI---  341 (418)
T ss_pred             HHHHHHHHHHHHcCc------c------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH---
Confidence            988877655554210      0                  0124556777888999988888888899999999777   


Q ss_pred             hhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHHh
Q 018406          224 KTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       224 ~~~r~~~~~~~~-~~~~iG~~i~p~i~~~i~~~------~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                         |++.+++++ ....+|..++|.+.|++.+.      .||++.|.+.+++.++..+++.+
T Consensus       342 ---~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~  400 (418)
T TIGR00889       342 ---RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMI  400 (418)
T ss_pred             ---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence               899999997 56789999999999999887      45898988877775555544433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.39  E-value=4.6e-12  Score=103.09  Aligned_cols=130  Identities=20%  Similarity=0.243  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHH
Q 018406          113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT  192 (356)
Q Consensus       113 ~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (356)
                      .+.++..++.++.|+++||+ |||+.+.++..+..++.+.+....                            +...+++
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~   56 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS----------------------------NITVLII   56 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc----------------------------cHHHHHH
Confidence            45667788899999999998 999999999888887776665431                            3666777


Q ss_pred             HHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406          193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (356)
Q Consensus       193 ~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~  272 (356)
                      .+++.|++.+...+....+..|.+|+++      |+...++++....+|..+++.+.+++.+..+|++.|++..++.++.
T Consensus        57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (141)
T TIGR00880        57 ARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA  130 (141)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence            8899999999888999999999999877      8999999999999999999999999998889999988877665555


Q ss_pred             HHHHH
Q 018406          273 NMLFF  277 (356)
Q Consensus       273 ~~~~~  277 (356)
                      .+...
T Consensus       131 ~~~~~  135 (141)
T TIGR00880       131 FILLA  135 (141)
T ss_pred             HHHHh
Confidence            44443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.39  E-value=6.9e-11  Score=112.03  Aligned_cols=135  Identities=17%  Similarity=0.119  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 018406           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (356)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~  167 (356)
                      ....+...+++.|+.+..+++++..++.+++.++++..|++.+|+ |+|+.++++..++++|..+..-++.         
T Consensus        31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~---------  100 (422)
T COG0738          31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS---------  100 (422)
T ss_pred             cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh---------
Confidence            445678889999999999999999999999999999999999998 9999999999999999988875542         


Q ss_pred             CccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (356)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~  247 (356)
                                      ...+..++++++++|.|.+.......+++..+.+++.      -..-.+..+....+|+.++|+
T Consensus       101 ----------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~  158 (422)
T COG0738         101 ----------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPL  158 (422)
T ss_pred             ----------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHH
Confidence                            1357889999999999999999999999999999865      344556666677889999999


Q ss_pred             HHHHHHh
Q 018406          248 LVVYIQM  254 (356)
Q Consensus       248 i~~~i~~  254 (356)
                      +++++..
T Consensus       159 ~g~~lil  165 (422)
T COG0738         159 LGSSLIL  165 (422)
T ss_pred             HHHHHHH
Confidence            9987765

>PRK03545 putative arabinose transporter; Provisional

Probab=99.38  E-value=1e-10  Score=113.36  Aligned_cols=171  Identities=15%  Similarity=-0.024  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~  151 (356)
                      +......++.....++...+++.|+.+.+|++..+++.+...+.++..++.++.|+++||+ |||..+ ++..+..++..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~  285 (390)
T PRK03545        208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLL  285 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHH
Confidence            3334444455555556667778888888999999999999999999999999999999997 987654 44444443333


Q ss_pred             HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (356)
                      .+....                           .+...+++..++.|++.+...+.....+.+..| +.      +++++
T Consensus       286 ~l~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~  331 (390)
T PRK03545        286 LLLPAA---------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAM  331 (390)
T ss_pred             HHHHHh---------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHH
Confidence            332211                           135566667777888877666666777777665 34      68888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       232 ~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      ++++....+|..+||.+.|++.++.|++..|++.+++.++++++...
T Consensus       332 g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        332 ALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence            88888889999999999999999999999998888777766665544

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.38  E-value=3e-11  Score=119.57  Aligned_cols=147  Identities=20%  Similarity=0.253  Sum_probs=130.8

Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCC
Q 018406           99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (356)
Q Consensus        99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (356)
                      +++++..+.+.+.+.+..++.++.+.+|+++||| |-|+++.++.++..++.++.-++..                    
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~--------------------  125 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS--------------------  125 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            5788999999999999999999999999999998 9999999999999999888877753                    


Q ss_pred             CCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cc
Q 018406          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HG  257 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~-~g  257 (356)
                            .....+++.|+++|++.|...++...+.+.++|+.+      |+++.++.+.+..+|.+++-.+.|++.+. .|
T Consensus       126 ------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~G  193 (466)
T KOG2532|consen  126 ------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLG  193 (466)
T ss_pred             ------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence                  134467899999999999999999999999999887      99999999999999999999899999988 89


Q ss_pred             hhHHHHHHHHHHHHHHHHHHh
Q 018406          258 WGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       258 w~~~f~i~~~~~~i~~~~~~~  278 (356)
                      |++.|++.+++.++..++++.
T Consensus       194 W~sifY~~g~~g~i~~~~w~~  214 (466)
T KOG2532|consen  194 WPSIFYVFGIVGLIWFILWFL  214 (466)
T ss_pred             CchHHHHHHHHHHHHHHHHHH
Confidence            999999988887665555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.38  E-value=4.7e-11  Score=116.72  Aligned_cols=159  Identities=12%  Similarity=-0.003  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 018406           85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP  164 (356)
Q Consensus        85 ~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~  164 (356)
                      .+++..+++.|+++.+|++....+.+.+.+.++..++.++.++++|+. ++++.+.++.++..++.+++.+..       
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-------  310 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP-------  310 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence            345666788898888999999999999999999999999999999986 888888888777776665554321       


Q ss_pred             CCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 018406          165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV  244 (356)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i  244 (356)
                                           +....+++.++.|++.+...+...+++.|.+|++.      |++.+++++...++|..+
T Consensus       311 ---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~  363 (417)
T PRK10489        311 ---------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAI  363 (417)
T ss_pred             ---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhH
Confidence                                 34556667777888877777777888899999776      899999999999999999


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       245 ~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      ++.+.+++.+..|+...+.+.+++.++..++...
T Consensus       364 g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  397 (417)
T PRK10489        364 GAALLGGLGAMMTPVASASASGFGLLIIGVLLLL  397 (417)
T ss_pred             HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887877766655444444333

>TIGR00897 2A0118 polyol permease family

Probab=99.37  E-value=1.2e-10  Score=113.60  Aligned_cols=176  Identities=14%  Similarity=0.056  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLA  148 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~-~~~~l~~~  148 (356)
                      .++...+..++....++++..+++.|++ ++|++..+.+.+.....++..++.++.|+++||+ |||+.+. .+.+...+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~  300 (402)
T TIGR00897       223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGI  300 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Confidence            3456666677777888888888998875 5899999999988889999999999999999998 9888764 23332333


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      +.+.+.....   ...                    .+...+++..++.|++.++..+ ......|..| ++      ++
T Consensus       301 ~~~~l~~~~~---~~~--------------------~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g  349 (402)
T TIGR00897       301 FTLALYYIPQ---HFG--------------------HSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KG  349 (402)
T ss_pred             HHHHHHHHHH---ccC--------------------CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hH
Confidence            2222222110   000                    1344555666777777776544 4455666544 34      89


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      ..+++++....+|..++|.+.+++.+..||...|++.+++.+++.++..+
T Consensus       350 ~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       350 AAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998998888776665555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12382 putative transporter; Provisional

Probab=99.37  E-value=4.9e-11  Score=115.53  Aligned_cols=160  Identities=14%  Similarity=0.103  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 018406           80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM  159 (356)
Q Consensus        80 ~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~  159 (356)
                      +..+.+..+..+.+.|+.+ .+++.  .+.....+.++..++.++.|++.||+ |||+.+.++..+..++.+++.+..  
T Consensus       227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~--  300 (392)
T PRK12382        227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP--  300 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc--
Confidence            3344455555666777754 56543  45556667777788999999999997 999999988888877776554421  


Q ss_pred             cccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHH
Q 018406          160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT  239 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~  239 (356)
                                                +...++++.++.|++.+...+...+...|.+++++      |++.+++++....
T Consensus       301 --------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~  348 (392)
T PRK12382        301 --------------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQD  348 (392)
T ss_pred             --------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence                                      34556667788888888877888888889988766      8999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406          240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       240 iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~  277 (356)
                      +|..++|.+.+++.+..||++.|.+.+++.+++.++.+
T Consensus       349 ~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        349 IAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988877766665544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.37  E-value=2e-11  Score=119.70  Aligned_cols=174  Identities=15%  Similarity=0.131  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhH-HHHHHHHHHHHHHHHHH
Q 018406           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGIT  154 (356)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GRr~-~i~~~~~l~~~g~~~~~  154 (356)
                      +...+....+..+++.|+++++|++...++.+.++..+...+..++.|+++||.   +|||| .++++.+++.++.+++.
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~   88 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF   88 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence            344555556667788999999999999999999999999999999999999984   48855 56677777777766665


Q ss_pred             HHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHH
Q 018406          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (356)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~  234 (356)
                      ...   ....                   ......+++.+++.+++.+....+..++.+|..++.+     +|++..++.
T Consensus        89 ~~~---~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~  141 (437)
T TIGR00792        89 TTP---DFSA-------------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFR  141 (437)
T ss_pred             hCC---CCCc-------------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHH
Confidence            431   1000                   1234556666777788888877788888889876433     378888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-------hcchhHHHHHHHHHHHHHHHHHHhh
Q 018406          235 YLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIG  279 (356)
Q Consensus       235 ~~~~~iG~~i~p~i~~~i~~-------~~gw~~~f~i~~~~~~i~~~~~~~~  279 (356)
                      +...++|+.++..+.+.+..       ..+|++.+.+.+++.++..++....
T Consensus       142 ~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  193 (437)
T TIGR00792       142 RFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFG  193 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcC
Confidence            88888888777766655542       3579888887777665554444333

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.36  E-value=1.8e-10  Score=111.54  Aligned_cols=169  Identities=9%  Similarity=-0.063  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      +.++..++..++...+.+.+.++.+.|++ ++|.+....+.......++..+..++.+++.||+ |.|+.+.++.++..+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            44566666667767777778888899996 4899999999999989999999999999999998 999999999999988


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      ..+.+....                            +.+.+++..++.|+..+...+....++.+. |+++      ++
T Consensus       283 ~~~~~~~~~----------------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~  327 (382)
T TIGR00902       283 RWAIIGAIE----------------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IA  327 (382)
T ss_pred             HHHHHHhHh----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HH
Confidence            887776542                            467778888999999999999999999987 7655      78


Q ss_pred             hHHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406          229 RFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       229 ~~~~~~~-~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~  275 (356)
                      ...+.++ .+..+|..+++.++|++.+..|+ ..|.+.+++.++++++
T Consensus       328 ~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       328 KLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            8888876 46678999999999999999886 5677766666555444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.36  E-value=1.2e-10  Score=115.38  Aligned_cols=196  Identities=12%  Similarity=0.074  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcchhHHHHHH-HHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA----YLGRYWTIAIF-TTI  145 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~----~~GRr~~i~~~-~~l  145 (356)
                      ++.+....+...+++-....+++.|+ +++|.+....+.+..+..+...+..++.|++|||    + |||+.++++ .+.
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHH
Confidence            45555555566666655555666665 6799999999999999999999999999999995    7 999998875 444


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      .+++++++..+.....+...           .............++++..+..++.....++..++++|++|++++    
T Consensus        84 ~~~~l~ll~~~~~~~~~~~~-----------~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----  148 (477)
T TIGR01301        84 VAFAVILIGFAADIGHLFGD-----------NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----  148 (477)
T ss_pred             HHHHHHHHHhCchhhhhccc-----------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----
Confidence            55555555443211000000           000000011223445555666778888888999999999998761    


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHH--Hhhc-------------chhHHHHHHHHHHHHHHHHHHhhcccc
Q 018406          226 HLDRFFNFFYLSVTVGAIVAFTLVVYI--QMEH-------------GWGSAFGALAIAMGISNMLFFIGTPLY  283 (356)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i--~~~~-------------gw~~~f~i~~~~~~i~~~~~~~~~~~~  283 (356)
                      +++.+.+++.+..++|+.+++.++++.  ....             +.++.|.+.++++++..++.++..+++
T Consensus       149 ~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~  221 (477)
T TIGR01301       149 RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN  221 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence            246788889999999999999888765  2211             467888888887777666655554443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.36  E-value=1.9e-10  Score=113.27  Aligned_cols=173  Identities=11%  Similarity=0.051  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (356)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~  152 (356)
                      ..++..++....+|++..+++.|+.+.+|++..+++...++..++..++.++.|+++||+ |||++++++.++..+..++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~  325 (432)
T PRK10406        247 MVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVP  325 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHH
Confidence            333334445677888999999999999999998888888887778888888999999998 9999887766654333322


Q ss_pred             HHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHH
Q 018406          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN  232 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~  232 (356)
                      ......     ..                   .+....+....+..++.+...+....+.+|.||++.      |++.++
T Consensus       326 ~~~~~~-----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g  375 (432)
T PRK10406        326 ILSALQ-----NV-------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVG  375 (432)
T ss_pred             HHHHHH-----cC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhh
Confidence            221110     00                   011111111222223333344556788899999988      899999


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHH
Q 018406          233 FFYLSVT-VGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       233 ~~~~~~~-iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~  277 (356)
                      +.+...+ +++..+|.+.+++. ..| |...+.+.+++.+++++..+
T Consensus       376 ~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        376 LSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHH
Confidence            8775444 44556787777664 455 55555555555554444433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.36  E-value=3.8e-11  Score=118.22  Aligned_cols=159  Identities=16%  Similarity=0.116  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhH
Q 018406          108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM  187 (356)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (356)
                      +.+++++.++.++|++++|+++|++ |||..++++.++.+++.+++.++...                         ...
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~~  116 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------------PSF  116 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hhH
Confidence            6788899999999999999999998 99999999999999888888776431                         257


Q ss_pred             HHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHH-hhcchhHHHHHH
Q 018406          188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-VYIQ-MEHGWGSAFGAL  265 (356)
Q Consensus       188 ~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~-~~i~-~~~gw~~~f~i~  265 (356)
                      .+++++|++.|+..|......+-|+.|..|.+-      ||......+++.++|..++..++ ..+. +...|++.+...
T Consensus       117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~  190 (485)
T KOG0569|consen  117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP  190 (485)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence            889999999999999999999999999999988      89999899999999999986555 3444 334588888777


Q ss_pred             HHHHHHHHHHHHh--hcccccccCCCCChhHHHHHHH
Q 018406          266 AIAMGISNMLFFI--GTPLYRHRLPGGSPLTRVAQVL  300 (356)
Q Consensus       266 ~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~vl  300 (356)
                      .+..++.++++.+  ..|+|.-.  +++...++.+.+
T Consensus       191 ~i~~~~~l~~l~~~PESPk~Ll~--~k~~~~~A~~sl  225 (485)
T KOG0569|consen  191 LIPALLQLALLPFLPESPKYLLI--KKGDEEEARKAL  225 (485)
T ss_pred             HHHHHHHHHHHhcCCCCcchHHH--HcCCHHHHHHHH
Confidence            7765555444333  33444322  134444555544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.35  E-value=2.2e-10  Score=114.00  Aligned_cols=185  Identities=13%  Similarity=0.042  Sum_probs=147.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh--HHHHHHHH
Q 018406           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTT  144 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr--~~i~~~~~  144 (356)
                      +.|.+..-++..++-+-+...+......|.++++|++..+...+..+..+.+.++.+++|++.||+ |-|  ++++++.+
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~  357 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI  357 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence            345666667777777777778888899999999999999999999999999999999999999998 988  88887776


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      ++.+..+.-.+-........                    .+.+.+++.-++.|+..|+.++..-++.+++.|+.+    
T Consensus       358 ~~~~i~~~g~~G~~~~~~g~--------------------~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~----  413 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFFGL--------------------KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR----  413 (477)
T ss_pred             HHHHHHHHHHHHhhhcccCc--------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch----
Confidence            66432222222000000000                    145667777789999999999999999999999877    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHh
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~~  278 (356)
                        .+.+|++|.+..-..+.+||++.+.+.+..| .|+++....++.+++++++..
T Consensus       414 --e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  414 --EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence              8999999999999999999999999999887 888888877777777766544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.35  E-value=5.5e-11  Score=117.95  Aligned_cols=175  Identities=7%  Similarity=-0.004  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFTTIYL  147 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~-~GRr~~i~~~~~l~~  147 (356)
                      +.++..++..++..+.++....+++.|++ ++|++..+++.+.++..++..++.+++|+++||. +++++..+++..+.+
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            34566666666777777777788889986 4799999999999999999999999999999984 244444443332322


Q ss_pred             --HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          148 --AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       148 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                        ++.+++...                            .+.+.+++.+++.|++.++..++..+++.|.+|++.     
T Consensus       320 ~~l~~ll~~~~----------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~-----  366 (455)
T TIGR00892       320 NGLTHLLCALA----------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR-----  366 (455)
T ss_pred             HHHHHHHHHHh----------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH-----
Confidence              222222221                            135667777888999999888999999999998766     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHh
Q 018406          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~-gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                       +++.+++++...++|..++|.+++++.+.. +|++.|++.+++.+++.+..++
T Consensus       367 -~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~  419 (455)
T TIGR00892       367 -FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAI  419 (455)
T ss_pred             -HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHH
Confidence             899999999999999999999999998887 4999999888776665554433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.34  E-value=4.1e-11  Score=108.42  Aligned_cols=159  Identities=17%  Similarity=0.139  Sum_probs=131.7

Q ss_pred             cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 018406           62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (356)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~  141 (356)
                      .-+......+|.+.+..++-..+.+-+.+--+.++++.+|+|+..++++.+...+.+.+.+++.|.++|++ ||+.....
T Consensus       257 tdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~  335 (459)
T KOG4686|consen  257 TDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVA  335 (459)
T ss_pred             ccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHH
Confidence            33344455679999988888888888888889999999999999999999999999999999999999998 99865554


Q ss_pred             H-HHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 018406          142 F-TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (356)
Q Consensus       142 ~-~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~  220 (356)
                      + ++..+++-.+++++                              ...-+++..++|+..+.......+.++-..|+++
T Consensus       336 ~a~~~tl~~H~~l~Ft------------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q  385 (459)
T KOG4686|consen  336 SACILTLLGHSGLFFT------------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ  385 (459)
T ss_pred             HHHHHHHHHhhhHHhh------------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH
Confidence            4 45566666666654                              2335677778888877777778888999999888


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018406          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (356)
Q Consensus       221 ~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g  257 (356)
                            .|++++..+...|+|-++.|++++.+.+.-|
T Consensus       386 ------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  386 ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             ------hcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence                  9999999999999999999999999998765

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.33  E-value=1e-10  Score=113.09  Aligned_cols=155  Identities=9%  Similarity=-0.018  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHHHHHHHH
Q 018406           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGIT  154 (356)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr----~~i~~~~~l~~~g~~~~~  154 (356)
                      ++-.++...+...++.|+ +++|.+..+.+.+++++.+...++.+++|+++||+ ||+    +.+.+...+..   +...
T Consensus        14 ~~~~~~~g~~~p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~---~~~~   88 (382)
T PRK11128         14 FGYFFAYGVFLPFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFA---VAFW   88 (382)
T ss_pred             HHHHHHHHHHhhhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHH---HHHH
Confidence            333344444556677888 46899999999999999999999999999999998 984    22222222111   1111


Q ss_pred             HHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHH
Q 018406          155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF  234 (356)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~  234 (356)
                      ...                           .+.+.+++.+++.+++.+...+...++..+..+  +      ++..++..
T Consensus        89 ~~~---------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~------~~~a~~~~  133 (382)
T PRK11128         89 FGA---------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--Q------IGLDYGKV  133 (382)
T ss_pred             Hhc---------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--h------ccCCcchH
Confidence            111                           147778888998999888888877777666522  1      45556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406          235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN  273 (356)
Q Consensus       235 ~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~  273 (356)
                      ....++|..++|.+++++.+++||+..|++.++..++..
T Consensus       134 ~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~  172 (382)
T PRK11128        134 RLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML  172 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence            667789999999999999999999999987665544433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.33  E-value=3.1e-10  Score=113.70  Aligned_cols=175  Identities=10%  Similarity=0.067  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406           75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (356)
Q Consensus        75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~-~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~  153 (356)
                      .+..++..+..+....+.+.|+.+++|++..+.+.+.. ...++..++.+++|+++||+ |||+.+.++.++..++.+..
T Consensus       228 ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~  306 (491)
T PRK11010        228 LLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGY  306 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Confidence            33334444555555667788888889999999999874 55689999999999999998 99988777666555444333


Q ss_pred             HHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHH
Q 018406          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (356)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~  233 (356)
                      ......    .+                    +...+++..++..++.|...+...++..+..+.+.      .++.+++
T Consensus       307 ~~l~~~----~~--------------------~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl  356 (491)
T PRK11010        307 WLLSIT----DK--------------------NLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFAL  356 (491)
T ss_pred             HHHHhc----cc--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHH
Confidence            221100    00                    23334444455444445445666777788888776      6777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhc
Q 018406          234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (356)
Q Consensus       234 ~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~  280 (356)
                      ++...++|..+++.+.|++.+..||+..|.+.+++.+++++.....+
T Consensus       357 ~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        357 LSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999988888999999999999999888887777666655443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.33  E-value=1.9e-10  Score=110.05  Aligned_cols=129  Identities=21%  Similarity=0.262  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHH
Q 018406          118 SQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYIT  197 (356)
Q Consensus       118 ~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (356)
                      ..++.++.|+++||+ |||+++.++.++..++.+++.++.+....                    .......++++|++.
T Consensus        48 ~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~r~l~  106 (394)
T TIGR00883        48 RPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI--------------------GIWAPILLLLARLIQ  106 (394)
T ss_pred             hhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh--------------------HHHHHHHHHHHHHHH
Confidence            346889999999998 99999999999999888877765310000                    001124578889999


Q ss_pred             HHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hhcchhHHHHHHHHHH
Q 018406          198 GFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAM  269 (356)
Q Consensus       198 gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~--------~~~gw~~~f~i~~~~~  269 (356)
                      |++.+...+....+++|.+++++      |+...++.+.+..+|..+++.+...+.        +..+|++.|.+.+++.
T Consensus       107 G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  180 (394)
T TIGR00883       107 GFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLV  180 (394)
T ss_pred             HhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHH
Confidence            99999999999999999999877      889999999999999999988776553        3468999988766655


Q ss_pred             HHHH
Q 018406          270 GISN  273 (356)
Q Consensus       270 ~i~~  273 (356)
                      ++..
T Consensus       181 ~~~~  184 (394)
T TIGR00883       181 LIGL  184 (394)
T ss_pred             HHHH
Confidence            4443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.33  E-value=2e-10  Score=108.32  Aligned_cols=165  Identities=10%  Similarity=0.011  Sum_probs=125.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      +++..++..+..++...+-.++..+++.|+.+.  +|++..+++...+.+.++..++.+++++++||+ |+++++.++.+
T Consensus       138 ~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~  216 (310)
T TIGR01272       138 QFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAF  216 (310)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Confidence            344566666666666556667888999999754  799999999999999999999999999999998 99999888887


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      +.+++.++.....                            ... ...+.++.|++.+...|...+...+.++++.    
T Consensus       217 l~~~~~~l~~~~~----------------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~----  263 (310)
T TIGR01272       217 LAVLLSIGAALTH----------------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT----  263 (310)
T ss_pred             HHHHHHHHHHHcC----------------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----
Confidence            7776664443321                            111 2235567899999999999998888888653    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM  269 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~  269 (356)
                       ..++  ++. ....+|+++.|.+.|++.|..|.+.+|+++.++.
T Consensus       264 -~~as--ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~  304 (310)
T TIGR01272       264 -SQGS--GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY  304 (310)
T ss_pred             -hhhH--HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence             1333  333 4567899999999999999999888887655543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.33  E-value=1e-10  Score=114.70  Aligned_cols=163  Identities=14%  Similarity=0.035  Sum_probs=113.9

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccc
Q 018406           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR  171 (356)
Q Consensus        92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  171 (356)
                      ...++.+++|++..+++.......++..++.+++|+++||+ |||+.+.++.++..++.+++.+......  +.      
T Consensus       306 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------  376 (481)
T TIGR00879       306 YSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV--TG------  376 (481)
T ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc--CC------
Confidence            34455567899998888888888999999999999999998 9999999888777777666653211000  00      


Q ss_pred             cccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018406          172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY  251 (356)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~  251 (356)
                               .........+....++.+....+..+....+.+|.+|++.      |+...++.+...++|++++|.+.++
T Consensus       377 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~  441 (481)
T TIGR00879       377 ---------SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPT  441 (481)
T ss_pred             ---------cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     0000012222222222222222334566677799999776      8999999999999999999999999


Q ss_pred             HHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          252 IQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       252 i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      +.++.+|++.|++.+++.+++.++.++
T Consensus       442 ~~~~~~~~~~f~~~~~~~~~~~i~~~~  468 (481)
T TIGR00879       442 MLESIGVGGVFIFFGGLNVLGLIFVYF  468 (481)
T ss_pred             HHHhcCccceehhHHHHHHHHHHHHhe
Confidence            999899999998877776655554433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.30  E-value=1.2e-10  Score=114.90  Aligned_cols=178  Identities=15%  Similarity=0.093  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      .+|.+.+..++.....+++..+++.|+++..|++..++++....+.++..++.+++|+++||+ |+++....+..+..+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~  330 (438)
T TIGR00712       252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV  330 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence            455666666666677788888999999998999999999999999999999999999999997 7543222333222211


Q ss_pred             HHHHH-HHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          150 LTGIT-LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       150 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      .+... +...     +.                   .+....++..++.|++..+..........|.+|++.      ++
T Consensus       331 ~~~~~~~~~~-----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g  380 (438)
T TIGR00712       331 TIAVIVYWMN-----PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AG  380 (438)
T ss_pred             HHHHHHHHhc-----CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------ee
Confidence            11111 1100     00                   012223333444454433332333345678899776      89


Q ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          229 RFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       229 ~~~~~~~~~~~iG~-~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      ...++++...++|+ +++|.+.+++.+..||.++|++.+++.+++++..++
T Consensus       381 ~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  431 (438)
T TIGR00712       381 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  431 (438)
T ss_pred             eehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            99999988777775 689999999999999999988777765555555444

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.30  E-value=6.8e-10  Score=111.64  Aligned_cols=152  Identities=15%  Similarity=0.066  Sum_probs=124.3

Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCC
Q 018406           99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS  178 (356)
Q Consensus        99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (356)
                      ++.-|+...+.+..+..+-..+..+++|.++||+ .||++++.+.++..+..+.+++.....                  
T Consensus        39 ~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L~~l~~~~------------------   99 (524)
T PF05977_consen   39 QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLLAVLAFFG------------------   99 (524)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHhC------------------
Confidence            4566888889999999999999999999999998 999999999888776655555433210                  


Q ss_pred             CCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406          179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw  258 (356)
                           ..+.+.+++..++.|++.+...+...+++.|+.|+++      ...+.++.....++.-.+||.++|.+....|-
T Consensus       100 -----~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~  168 (524)
T PF05977_consen  100 -----LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGA  168 (524)
T ss_pred             -----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence                 1246778888899999999999999999999999877      88899999999999999999999999998888


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhc
Q 018406          259 GSAFGALAIAMGISNMLFFIGT  280 (356)
Q Consensus       259 ~~~f~i~~~~~~i~~~~~~~~~  280 (356)
                      .+.|.+.++..++.++.+...+
T Consensus       169 ~~~f~inalsfl~~i~~l~~~~  190 (524)
T PF05977_consen  169 AAAFLINALSFLISILALLRWK  190 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc
Confidence            8899888777665554444333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.29  E-value=9.2e-11  Score=111.76  Aligned_cols=183  Identities=14%  Similarity=-0.012  Sum_probs=142.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~  147 (356)
                      -+..|...+..+..--++.++..+++.|++++|+.++.+++.....+.+...+.-+++|+||||+ |.++++.+....++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            34578889999998888999999999999999999999999999999999999999999999998 99998888888888


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      ++...+.....  ...               .    ..+...+++..+.+++..|.-.+.+..+++..|+.+       .
T Consensus       296 ~~~~~l~~~~~--~~~---------------~----~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~  347 (417)
T COG2223         296 LAAALLSLFLT--GFG---------------H----GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------T  347 (417)
T ss_pred             HHHHHHHcccc--ccc---------------c----CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------h
Confidence            77777665421  000               0    113444444445555555555666777777777753       5


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHhh
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG  279 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~~~  279 (356)
                      +...++......+|+..-|...+...+..| +...|++...+.+++.++.+..
T Consensus       348 G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         348 GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             hHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            777888888889999999999999999888 8888988877777666655444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.26  E-value=9.7e-10  Score=105.45  Aligned_cols=181  Identities=15%  Similarity=0.077  Sum_probs=141.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~  147 (356)
                      .+.++...+..++...+.|...+++-.|+++..|++....+++...|-++..++.+++|+++||  +.|+++....++..
T Consensus       210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a  287 (394)
T COG2814         210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLA  287 (394)
T ss_pred             CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHH
Confidence            3457888888888888999999999999999999999999999999999999999999999998  78888888877777


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      +.++.+.+...                           +.....+..++.|+..+........-.++..| +.      .
T Consensus       288 ~~~l~l~~~~~---------------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~------~  333 (394)
T COG2814         288 LALLALTFTGA---------------------------SPALALALLFLWGFAFSPALQGLQTRLARLAP-DA------A  333 (394)
T ss_pred             HHHHHHHHhcc---------------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-Cc------h
Confidence            66666655421                           34455555555666655544445555555333 33      6


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccc
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR  284 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~  284 (356)
                      ....+++....|+|..+|..++|.+.+++|+....++.+++.++++++.+...+.++
T Consensus       334 ~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~  390 (394)
T COG2814         334 DLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDR  390 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            778888888899999999999999999999999999888888877777666555443

>PRK10504 putative transporter; Provisional

Probab=99.26  E-value=6.2e-10  Score=110.52  Aligned_cols=156  Identities=10%  Similarity=-0.026  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~  150 (356)
                      ++..++..++..+.+.......+.|++..+|.+...++.......++..++.++.|+++||+ |||+++.++.++..++.
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~  341 (471)
T PRK10504        263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVS  341 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence            44455555566666555555677788878999999999888888888888889999999998 99999998888777766


Q ss_pred             HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (356)
                      +++.+...      .                   .....+.+..++.|++.+...+....+..+.+|++.      ++..
T Consensus       342 ~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  390 (471)
T PRK10504        342 LLFMLVAL------L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSG  390 (471)
T ss_pred             HHHHhccc------c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccch
Confidence            55544210      0                   123334455667788888888888888899998776      8999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (356)
Q Consensus       231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw  258 (356)
                      ++++++...+|..+|+.+.+.+.+..|+
T Consensus       391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999888776554

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.26  E-value=1.5e-10  Score=115.99  Aligned_cols=179  Identities=16%  Similarity=0.135  Sum_probs=146.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVN---MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~  141 (356)
                      .+.|-  |.+.+..++..+..+++...   +...++++++.+..+.+++.++......+..++.+.+.||+ |.|.++++
T Consensus        40 dGG~g--WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~  116 (509)
T KOG2504|consen   40 DGGWG--WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIA  116 (509)
T ss_pred             CCCee--eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHH
Confidence            45554  77777777777777775443   34567788999999999999999999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHH-HHHHHhhhchhhhhhhhhhccCCCCC
Q 018406          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERS  220 (356)
Q Consensus       142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~gig~g~~~~~~~~~~ad~f~~~~  220 (356)
                      |.++..+|.++..++.                            +.+.+++.. ++.|+|.|+...+....+...|..  
T Consensus       117 G~~v~~~g~~lssF~~----------------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k--  166 (509)
T KOG2504|consen  117 GGLVAALGLLLSSFAT----------------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK--  166 (509)
T ss_pred             HHHHHHHHHHHHHHHh----------------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH--
Confidence            9999999999988874                            477777776 778999999998888888877773  


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (356)
Q Consensus       221 ~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~  281 (356)
                           ||+.+.++-..+..+|..+-|.+..++.+.+|||+.+++.+.+.+-.++.....+|
T Consensus       167 -----kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  167 -----KRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             -----HHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence                 48888888878888888888889999999999999999888877555555444444

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.25  E-value=6.6e-10  Score=110.27  Aligned_cols=179  Identities=16%  Similarity=0.068  Sum_probs=120.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH------
Q 018406           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI------  139 (356)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i------  139 (356)
                      -+++.+|...+..++....++.+..++|.|+.+.+|++..+++....+..++..++.+++|+++||+ ++|+..      
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~  336 (465)
T TIGR00894       258 PKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAAR  336 (465)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHH
Confidence            3456678888888899999999999999999999999999999999999999999999999999997 644211      


Q ss_pred             --HHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 018406          140 --AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (356)
Q Consensus       140 --~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~  217 (356)
                        ..+..+...+..++.....     .                    .+....++...+.+.+.++..+.......|..|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  391 (465)
T TIGR00894       337 KIFNGIGGLGPGIFAYALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP  391 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh
Confidence              1111111111111111100     0                    012233333444444444444444444455554


Q ss_pred             CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHHHHH
Q 018406          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~---gw~~~f~i~~~~~~i~~~~~~  277 (356)
                      . .      ++...++.+...++|+.++|.+.+++.+..   +|..+|.+.+++.+++.++..
T Consensus       392 ~-~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       392 R-F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             h-H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            3 3      799999999999999999999999987653   378888887777666655443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.25  E-value=2.2e-10  Score=112.15  Aligned_cols=165  Identities=8%  Similarity=-0.078  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIY  146 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~-i~~~~~l~  146 (356)
                      +.+|...+..++....++++.+++|.|+++ ..+++..+++.......++..++.+++|+++||+ |||+. +.+..++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~  320 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA  320 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence            346777777788888888999999999976 3477888889899999999999999999999997 87764 33333333


Q ss_pred             HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (356)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (356)
                      .++.++ ....      .                     +....+++..+.++|.....+.......|.+|++.      
T Consensus       321 ~~~~~~-~~~~------~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------  366 (412)
T TIGR02332       321 AAGWLL-ASAT------D---------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------  366 (412)
T ss_pred             HHHHHH-HHhc------C---------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------
Confidence            333211 1111      0                     11112222223334433333334444567777666      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHH
Q 018406          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA  268 (356)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~  268 (356)
                      |+..+++.+...++|++++|.+.+.+.+..| |+++|++.+++
T Consensus       367 ~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       367 RAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            9999999999999999999999999999875 99988876554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.25  E-value=3.6e-10  Score=112.76  Aligned_cols=175  Identities=11%  Similarity=0.037  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-----HHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-----TIAIFTTI  145 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~-----~i~~~~~l  145 (356)
                      .|.+.+..++.....+++..+++.|+.+++|++..+++...+++.++..++.+++|+++||+ |||+     ..+....+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~  332 (476)
T PLN00028        254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ  332 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence            34444444445555566677789999888999999999999999999999999999999998 8762     22211111


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      .+.+...+.+..      .                    .+....++..++.+++.++..+...++..+..+ +.     
T Consensus       333 ~l~~i~~~~~~~------~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~-----  380 (476)
T PLN00028        333 TLGGVFCIWLGR------A--------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS-----  380 (476)
T ss_pred             HHHHHHHHHhcc------c--------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh-----
Confidence            111111111111      0                    023344444555566555555555555566544 23     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhc
Q 018406          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT  280 (356)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~  280 (356)
                       ++...++.+...++|+.+++.+.+ ..+..+|..+|++.+++.+++.++.++.+
T Consensus       381 -~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        381 -LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             -chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence             788888877777777777776543 22234699999988877777766655543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.24  E-value=2.1e-10  Score=109.18  Aligned_cols=161  Identities=16%  Similarity=0.122  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH--HHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT--IYL  147 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~--l~~  147 (356)
                      .++.+.+..++.....+++..+++.|+.+.+|++..+++.....+.++..++.+++|+++||+.+||+.......  +..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~  296 (379)
T TIGR00881       217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII  296 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            456666666777777777888899999999999999999999999999999999999999986344433222211  111


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      ++.......       +.                   .+...+++..++.|+...+.......+..|.+|++.      |
T Consensus       297 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  344 (379)
T TIGR00881       297 VSLLVYWLN-------PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A  344 (379)
T ss_pred             HHHHHHhcC-------cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h
Confidence            111111110       00                   123344445556666555556666778899999877      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF  262 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f  262 (356)
                      +...++++....+|..++|.+.+++.+..||++.|
T Consensus       345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            99999999999999999999999999999998754

>PRK09669 putative symporter YagG; Provisional

Probab=99.24  E-value=6.2e-10  Score=109.94  Aligned_cols=180  Identities=9%  Similarity=0.032  Sum_probs=121.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHH-HHHHH
Q 018406           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWT-IAIFT  143 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GRr~~-i~~~~  143 (356)
                      ++.-+.-.+..+..++.+..+..+++.|+++++|++...++.+..+..+.-.+..|+.|+++||.   +|||+. ++++.
T Consensus         8 ~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~   87 (444)
T PRK09669          8 TKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFA   87 (444)
T ss_pred             HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHH
Confidence            33334333444566666667778899999999999999999999999999999999999999993   388554 54566


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (356)
Q Consensus       144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~  223 (356)
                      +.+.+..+++...   |....                   ......+++..++.+++..+...+..++.+|+.++.+   
T Consensus        88 ~~~~i~~~l~f~~---p~~~~-------------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~---  142 (444)
T PRK09669         88 IPFGVVCLLTFYT---PDFGA-------------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR---  142 (444)
T ss_pred             HHHHHHHHHHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH---
Confidence            6665555444332   11110                   1234555555666676667777788899999886533   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-------hcchhHHHHHHHHHHHHHHH
Q 018406          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNM  274 (356)
Q Consensus       224 ~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~-------~~gw~~~f~i~~~~~~i~~~  274 (356)
                        .|++..++.....++|+.+++.+...+..       ..||+..+.+.+++.++..+
T Consensus       143 --eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~  198 (444)
T PRK09669        143 --ERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF  198 (444)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence              27778888887888888777765544332       23566666655555444433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.23  E-value=1.6e-09  Score=104.83  Aligned_cols=170  Identities=11%  Similarity=0.002  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~  151 (356)
                      +......++.....+...++++.|+.+.+|++..+.+...+...++..++.++.|+++||+ |+++.+.++..+..++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~  280 (382)
T PRK10091        202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALL  280 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHH
Confidence            4444434444444445556677788888999999999999999999999999999999998 999999888877777665


Q ss_pred             HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhcc-CCCCChhhhhhhhhH
Q 018406          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ-FDERSKDYKTHLDRF  230 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~-f~~~~~~~~~~r~~~  230 (356)
                      ++.....                           +....++..++.++|.++..++......+. .+.+.      ++..
T Consensus       281 ~~~~~~~---------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~  327 (382)
T PRK10091        281 MLFFFGG---------------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA  327 (382)
T ss_pred             HHHHHHh---------------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH
Confidence            5433211                           223344444455555544444333333333 33222      3333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHH
Q 018406          231 FNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       231 ~~~~~~~~~iG~~i~p~i~~~i~~~-~gw~~~f~i~~~~~~i~~~~~~  277 (356)
                        ..+....+|..+||.+.+++.+. .+|++.+.+.+++.++.+..+.
T Consensus       328 --~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        328 --GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             --HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence              23556789999999999999885 5798888877666555444433

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.23  E-value=1.4e-09  Score=106.30  Aligned_cols=147  Identities=15%  Similarity=0.034  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccC
Q 018406           84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM  163 (356)
Q Consensus        84 ~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~  163 (356)
                      ..+.+..+++.|+.+ .|++....+...+...++..++.+++|+++||+ |||+.+.++.++..++.+++.....     
T Consensus       246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~-----  318 (426)
T PRK12307        246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ-----  318 (426)
T ss_pred             HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence            334466678888875 699988888888888899999999999999998 9999988887776655444332210     


Q ss_pred             CCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 018406          164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI  243 (356)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~  243 (356)
                                           .....+.+..+..+++..+..+..+.++.|.+|++.      +++.+++.+....+|+.
T Consensus       319 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~  371 (426)
T PRK12307        319 ---------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGT  371 (426)
T ss_pred             ---------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHH
Confidence                                 012222222222333333445567788899999876      89999998888899999


Q ss_pred             HHHHHHHHHHhhcchhHHHHH
Q 018406          244 VAFTLVVYIQMEHGWGSAFGA  264 (356)
Q Consensus       244 i~p~i~~~i~~~~gw~~~f~i  264 (356)
                      ++|.+.+++.+..|+....++
T Consensus       372 ~gp~~~g~l~~~~g~~~~~~~  392 (426)
T PRK12307        372 FNSMAATWLGITMGLGAALTF  392 (426)
T ss_pred             HHHHHHHHHHHcccHHHHHHH
Confidence            999999999998886554333

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.22  E-value=1.3e-10  Score=109.08  Aligned_cols=132  Identities=16%  Similarity=0.076  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018406           87 GLSVNMVTFMFYVMHK----SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (356)
Q Consensus        87 ~~~~~l~~yl~~~~~~----s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~  162 (356)
                      .+..+++..++...+.    +..-++.+-+.|.++..+.++++|-+||+| |||++++++++...+.+.+.+.+.     
T Consensus        46 ~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~-----  119 (451)
T KOG2615|consen   46 PFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR-----  119 (451)
T ss_pred             HHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH-----
Confidence            3444444444444433    334578888899999999999999999999 999999999999888777777653     


Q ss_pred             CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 018406          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA  242 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~  242 (356)
                                             +...++++|++.|+..|- .+...++++|.+++++      |+..++....+..+|-
T Consensus       120 -----------------------~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~------r~l~ms~v~~a~~lGf  169 (451)
T KOG2615|consen  120 -----------------------NFAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKY------RPLGMSLVGTAFGLGF  169 (451)
T ss_pred             -----------------------HHHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhh------ccceeeeeehhhhcch
Confidence                                   567788889999998665 5678899999999877      8899999999999999


Q ss_pred             HHHHHHHHHHHh
Q 018406          243 IVAFTLVVYIQM  254 (356)
Q Consensus       243 ~i~p~i~~~i~~  254 (356)
                      .+||.+++|+..
T Consensus       170 ilGPmIGgyla~  181 (451)
T KOG2615|consen  170 ILGPMIGGYLAQ  181 (451)
T ss_pred             hhcchhhhHHHh
Confidence            999999999987

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.22  E-value=8e-10  Score=104.79  Aligned_cols=153  Identities=9%  Similarity=0.017  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      ++..++..++....++++. ...+.|+++.+|.+..+.+.+.....++..++.++.++++||+ ||++.+.++.++..++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  290 (365)
T TIGR00900       212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA  290 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence            4445555555555555555 5667777777999999999999999999999999999999998 9999988876666655


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      .+++....                          . +.+.+++..++.|++.+...+...+++.|.+|++.      |++
T Consensus       291 ~~~~~~~~--------------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~  337 (365)
T TIGR00900       291 ILVVGLTP--------------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGR  337 (365)
T ss_pred             HHHHHhhc--------------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHH
Confidence            55444321                          0 25566777888999999888899999999999766      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~g  257 (356)
                      ..++++...++|..++|.+.+++.+..|
T Consensus       338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       338 VFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999988654

>TIGR00895 2A0115 benzoate transport

Probab=99.22  E-value=4.8e-10  Score=107.57  Aligned_cols=149  Identities=14%  Similarity=0.033  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~  147 (356)
                      ++..+...+..++....++.+..+++ |+.+++|++..+.+.......++..++.+++|+++||+ |||+.+....+..+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  326 (398)
T TIGR00895       249 ARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAV  326 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHH
Confidence            44455555555666667777777777 67778999999999999999999999999999999998 99955444333333


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      +.. ++....                           .+...+++..++.|++.++..+...++.+|.+|++.      |
T Consensus       327 ~~~-~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~  372 (398)
T TIGR00895       327 FAV-LVGSTL---------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------R  372 (398)
T ss_pred             HHH-HHHHHh---------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------H
Confidence            222 222211                           034556667788899988888999999999999776      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYI  252 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i  252 (356)
                      +..+++++....+|..++|.+.|++
T Consensus       373 g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       373 ATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            9999999999999999999998875

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.22  E-value=3.4e-09  Score=103.18  Aligned_cols=165  Identities=12%  Similarity=-0.094  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~  150 (356)
                      ++...+..++.....+......+.|+.+.+|++..+.+.......++..++.++.|+++||+ |+|+.+.++.++..++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~  295 (406)
T PRK15402        217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGL  295 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            34444444444444555556678888888999998888887777778889999999999998 99999999888887777


Q ss_pred             HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (356)
                      +++.+....   .+                    .+...++++.++.|+|.+...+..........+ ++      +++.
T Consensus       296 ~~~~~~~~~---~~--------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~g~~  345 (406)
T PRK15402        296 LLAALATVI---SS--------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-VS------KGTV  345 (406)
T ss_pred             HHHHHHHHc---cc--------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-cc------ccHH
Confidence            766654210   00                    135556777788888888766665554433322 33      8899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 018406          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  266 (356)
Q Consensus       231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~  266 (356)
                      .+.+++...+|..+|+.+.+++.+..++....+...
T Consensus       346 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~  381 (406)
T PRK15402        346 SAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNL  381 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHH
Confidence            999999999999999999999887777654444333

>TIGR00788 fbt folate/biopterin transporter

Probab=99.21  E-value=1.8e-09  Score=107.53  Aligned_cols=170  Identities=9%  Similarity=-0.000  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTTIY  146 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G-----Rr~~i~~~~~l~  146 (356)
                      ..+....+...+. +.+...+..++.+++|++.++.+...++..+...+-++ +|+++|++ +     ||+.++++.++.
T Consensus        29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHH
Confidence            4444466777777 66667788888889999999999999999999888776 99999998 7     777777776555


Q ss_pred             HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (356)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (356)
                      . ...+..++.     .++                    ......+.+++.+++.+......-++..|..+ +++   ..
T Consensus       106 ~-~~~~~~l~~-----~~~--------------------~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~  155 (468)
T TIGR00788       106 S-AILYGLLPG-----KVS--------------------SAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SA  155 (468)
T ss_pred             H-HHHHHhccc-----ccc--------------------hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---Cc
Confidence            2 111122211     011                    23333446788899999999999999999999 432   12


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (356)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~  274 (356)
                      .+...++.+.+.++|..+++.+++++.+..+|+..|++.+++.++..+
T Consensus       156 ~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~  203 (468)
T TIGR00788       156 GPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF  203 (468)
T ss_pred             CCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence            455666777778899999999999999999999999988777665543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.21  E-value=1.8e-09  Score=105.92  Aligned_cols=161  Identities=16%  Similarity=0.049  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      |.++..++..++..+..+......+.|++..++ +....+.+.....++..++.+++++++||+ |||+++.++.++.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            345556666666666666554444445544455 455666777777888899999999999998 999999999888887


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChh-hhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHL  227 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~-~~~~r  227 (356)
                      +.+.+.+..                           .+...+++..++.+++.+...+...++++|..+.++-+ ..++.
T Consensus       300 ~~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (437)
T TIGR00792       300 GYLIFFFAG---------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAE  352 (437)
T ss_pred             HHHHHHHcc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccch
Confidence            776655421                           13455666677888998888889999999988743211 12247


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw  258 (356)
                      |.+++++++...+|..+++.+.+++.+..||
T Consensus       353 G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       353 GLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            8899999999999999999999999887766

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.21  E-value=5.6e-10  Score=110.85  Aligned_cols=156  Identities=13%  Similarity=0.097  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      .++...+..++..+.+++...+++.|+++.+|++..+++.......++..++.+++|++.||+ |||+.+.++.++..++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~  334 (485)
T TIGR00711       256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVG  334 (485)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHH
Confidence            345556666667777788888899999999999999999999999999999999999999998 9999999888888777


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      ..++.....     ++                   .+...++...++.|+|.+...++......+.+|+++      ++.
T Consensus       335 ~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~  384 (485)
T TIGR00711       335 FYWRAFTFT-----PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IAR  384 (485)
T ss_pred             HHHHhccCC-----CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhH
Confidence            766553210     11                   134555666788899988887777777778888666      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQMEH  256 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~  256 (356)
                      ..++++...++|+.+|+.+.+.+.++.
T Consensus       385 ~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       385 GSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998887653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.20  E-value=7e-10  Score=111.23  Aligned_cols=155  Identities=13%  Similarity=0.046  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      |.+....+..++..+.+++...+++.|+++.+|++..+++.....+.++..++.+++|++.||+ |||+.+.++.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            3445566666677777778878899999999999999999999999999999999999999998 999999888888877


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      +.+++.....     .                    .+....++..++.|+|.|...+.......+..|+++      ++
T Consensus       338 ~~~~l~~~~~-----~--------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g  386 (495)
T PRK14995        338 SFYGLAMTDF-----S--------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AA  386 (495)
T ss_pred             HHHHHHHhcC-----C--------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cc
Confidence            7766544210     0                    123445566788899999888888888888888776      88


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018406          229 RFFNFFYLSVTVGAIVAFTLVVYIQME  255 (356)
Q Consensus       229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~  255 (356)
                      ...+++++..++|+.+|+.+.+.+.++
T Consensus       387 ~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        387 AAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999998887653

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.20  E-value=3.3e-09  Score=102.60  Aligned_cols=165  Identities=7%  Similarity=-0.087  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      .++..++..++...........++.|+. +.|++..+.+....+..++..+..++.|++.||+ |+++.+.++.++..++
T Consensus       206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~  283 (382)
T PRK11128        206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVR  283 (382)
T ss_pred             hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence            4455555555555555566677788885 5899998889888888888888889999999998 9999999888887777


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      .+.+....                            +.+.+++..++.|++.+...+....+..++ ++++      +++
T Consensus       284 ~~~~~~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~  328 (382)
T PRK11128        284 WGLMGSTT----------------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIR  328 (382)
T ss_pred             HHHHHhhh----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHH
Confidence            66554431                            466677778888998888777777777775 3333      566


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406          230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (356)
Q Consensus       230 ~~~~~~-~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~  272 (356)
                      ..++++ +...+|..++|.++|++.+..|+. .|+..+++.+++
T Consensus       329 ~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~  371 (382)
T PRK11128        329 LQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence            777765 556778899999999999998873 555555444433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.20  E-value=1.5e-09  Score=105.31  Aligned_cols=169  Identities=12%  Similarity=0.089  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      +..++..++....+......++.|+...+   +.+....+.+.++..+...++.++.|++.||+ |||+.+.++.+++.+
T Consensus       218 ~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l  296 (396)
T TIGR00882       218 WMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSV  296 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHH
Confidence            33344444444444445556777877665   44556667778888888888889999999998 999999998888777


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      +.++.....                            +...+++..++.|++.+........+..+.++++.      ++
T Consensus       297 ~~~~~~~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a  342 (396)
T TIGR00882       297 RIIGSSFAT----------------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SA  342 (396)
T ss_pred             HHHHHHhcC----------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EE
Confidence            666544421                            35556677778888876666666667777777665      55


Q ss_pred             hHHHH-HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406          229 RFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       229 ~~~~~-~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~  275 (356)
                      ...+. ++....+|+.+++.+.|++.+..||+..|.+.+++.++..++
T Consensus       343 t~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       343 TIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             EeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            55554 667889999999999999999999999998877776555443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.19  E-value=3.5e-09  Score=105.16  Aligned_cols=152  Identities=9%  Similarity=-0.046  Sum_probs=105.6

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccc
Q 018406           94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS  173 (356)
Q Consensus        94 ~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  173 (356)
                      .++.+++|++............+...++.+++|+++||+ |||+.++++.++..++.+++.....     .+        
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~-----~~--------  360 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY-----TQ--------  360 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHh-----cC--------
Confidence            344467888877777777777788889999999999998 9999999999998888877664321     00        


Q ss_pred             cccCCCCCcchhhHHHHHHHHHHHHHhhhc-hhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH--
Q 018406          174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV--  250 (356)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~-~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~--  250 (356)
                                 ........+.++.+++.+. ..+....+.+|.+|++.      |+..+++.+....+|..+++.+.+  
T Consensus       361 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~  423 (479)
T PRK10077        361 -----------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMM  423 (479)
T ss_pred             -----------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence                       0111222333444444433 33567889999999776      899999888888788777755544  


Q ss_pred             ----HHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          251 ----YIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       251 ----~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                          ++.+..+|++.|++.+++.+++.++.
T Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (479)
T PRK10077        424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFM  453 (479)
T ss_pred             HhccchhhhccCccHHHHHHHHHHHHHHHH
Confidence                44567788888887666555554443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.18  E-value=2.8e-09  Score=105.20  Aligned_cols=183  Identities=14%  Similarity=-0.007  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      ..|.+.+..++....|.++..+++.|+++.+  +.........+..+...+..+++|+|+||+ |++++++++.++.+++
T Consensus       253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~  329 (462)
T PRK15034        253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIF  329 (462)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHH
Confidence            3577888888887778778888999988766  333334444456778888899999999998 9999999998877776


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC----------
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER----------  219 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~----------  219 (356)
                      .+++.+..  |.-                    ...+...+.++.+++.++.|...+.+..+++..||++          
T Consensus       330 ~~~~~l~l--p~~--------------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~  387 (462)
T PRK15034        330 SALLFLTL--PGT--------------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG  387 (462)
T ss_pred             HHHHHHHh--ccc--------------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence            65544332  100                    0124566666666666666666777777777877741          


Q ss_pred             C-----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHH
Q 018406          220 S-----KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       220 ~-----~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~  277 (356)
                      .     ...+++.+...++......+|+.+-|.+.++..+..| +..+|++..+..++++++.+
T Consensus       388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            0     0111246777788888888889999988888877665 77888877766555554433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.16  E-value=6.6e-09  Score=100.66  Aligned_cols=172  Identities=7%  Similarity=-0.080  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~  150 (356)
                      +..+...++...+.....++.+.|+. +.|++..+.+.+..... ....++.+++|++.||+ |+++.+.++.++..+..
T Consensus       211 ~~~~~~~~l~~~~~~~~~~~~~~~l~-~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~  288 (390)
T TIGR02718       211 WSLLALALLSAMTAVSGFGLSKLYLV-DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSLA  288 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHH-hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            44444445555555556666777876 47999999999888765 46667789999999998 99999888776653332


Q ss_pred             HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC-CChhhhhhhhh
Q 018406          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDR  229 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~-~~~~~~~~r~~  229 (356)
                      +....... ....+                     ....++....+.+++.+...+...+...+..++ +.      +++
T Consensus       289 ~~~~~~~~-~~~~~---------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~  340 (390)
T TIGR02718       289 LLWFAQAA-FWLAP---------------------GIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGT  340 (390)
T ss_pred             HHHHHHHH-cccCC---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHH
Confidence            22221110 00000                     122333333444555666666667776676665 44      789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN  273 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~  273 (356)
                      .+++++...++|..++|.++|++.+..||+..|.+.+++.++++
T Consensus       341 ~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       341 DVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            99999988999999999999999999999888887766655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.16  E-value=5.6e-10  Score=111.04  Aligned_cols=150  Identities=12%  Similarity=0.057  Sum_probs=120.3

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccccccc
Q 018406           97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL  176 (356)
Q Consensus        97 ~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (356)
                      .++.++...+-+.+.+++.+++.++.++++.|.||+ .-.+.+..+.++..+..++....                    
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~--------------------  131 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV--------------------  131 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            356778888899999999999999999999999998 85665555555544444333332                    


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---
Q 018406          177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ---  253 (356)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~---  253 (356)
                              .+.+.+++.|+++|+..++..|+...+++-.|..++      |+..+++++....+|+++|.+++..+.   
T Consensus       132 --------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~  197 (495)
T KOG2533|consen  132 --------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLN  197 (495)
T ss_pred             --------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhc
Confidence                    158889999999999999999999999999999887      999999999999999999998887753   


Q ss_pred             ---hhcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406          254 ---MEHGWGSAFGALAIAMGISNMLFFIGTP  281 (356)
Q Consensus       254 ---~~~gw~~~f~i~~~~~~i~~~~~~~~~~  281 (356)
                         ...||||.|.+.+++.++..++.++..|
T Consensus       198 ~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  198 GSGGLAGWRWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             CCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence               3458999999998876655554444333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.15  E-value=1.4e-09  Score=109.18  Aligned_cols=171  Identities=16%  Similarity=0.077  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH------------HHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRYWTI  139 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~------------~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i  139 (356)
                      +.+....++..+.+|++..+++.+++ +.|++...++.            ...+..++..++.+++++++||+ |||+++
T Consensus       291 ~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l  368 (502)
T TIGR00887       291 LGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQ  368 (502)
T ss_pred             HHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHH
Confidence            33334445566778888777788775 67876442211            12233445566788899999998 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 018406          140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (356)
Q Consensus       140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~  219 (356)
                      +++.++..++.+++.+...     ..                   .....+....+...++..+..+....+.+|.||++
T Consensus       369 ~~~~~~~~~~~~~l~~~~~-----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~  424 (502)
T TIGR00887       369 LMGFFILTVLFFVLGFAYN-----HL-------------------STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTR  424 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----hc-------------------chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchh
Confidence            8888777766655554321     00                   00111111111122222233455667789999998


Q ss_pred             ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----------cchhHHHHHHHHHHHHHHH
Q 018406          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNM  274 (356)
Q Consensus       220 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~----------~gw~~~f~i~~~~~~i~~~  274 (356)
                      .      |+...++.+....+|++++|.+.+++.+.          .++...|++.+++.+++.+
T Consensus       425 ~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i  483 (502)
T TIGR00887       425 Y------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL  483 (502)
T ss_pred             H------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence            8      99999999999999999999999998874          2334456666555554443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10133 L-fucose transporter; Provisional

Probab=99.15  E-value=3.8e-09  Score=104.37  Aligned_cols=164  Identities=10%  Similarity=0.035  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406           73 FIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (356)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~  151 (356)
                      ...+..++.....+++..+++.|+ ++.+|++..+++.....+.++..++.+++|++.||+ |||+++.++.++.+++.+
T Consensus       262 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~  340 (438)
T PRK10133        262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCL  340 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHH
Confidence            334444555566666667788886 567899999999999999999999999999999998 999999888777665554


Q ss_pred             HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (356)
                      +..+..                            .. ..+++..+.|+|.+...|+..+...+.++++.       +...
T Consensus       341 ~~~~~~----------------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as  384 (438)
T PRK10133        341 ISAFAG----------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGS  384 (438)
T ss_pred             HHHHcC----------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccch
Confidence            433321                            11 12455678899999999999999999987643       2222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHH
Q 018406          232 NFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM  274 (356)
Q Consensus       232 ~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~  274 (356)
                      ++... ..+|+.++|.+.+++.+..| -+..|.++.++.++.+.
T Consensus       385 ~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        385 SFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             hHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            33222 33578888889999998887 67888776665544433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.14  E-value=4.1e-09  Score=105.10  Aligned_cols=174  Identities=10%  Similarity=0.013  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcchh-HHHHHHHHHHHH
Q 018406           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRY-WTIAIFTTIYLA  148 (356)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD----~~~GRr-~~i~~~~~l~~~  148 (356)
                      -.+..+...+.+..+..+++.|+++.+|++...++.+..+.-+.-.+..|+.|+++|    |+ ||| +.++++.+...+
T Consensus        11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i   89 (473)
T PRK10429         11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSV   89 (473)
T ss_pred             hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHH
Confidence            334455566777777888999999999999999999999999999999999999999    65 984 555566666666


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      +.+++...   |..                   +.+.....+++..++..++......+..++++|+.++.+     .|.
T Consensus        90 ~~~llf~~---p~~-------------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~  142 (473)
T PRK10429         90 VLFLLFSA---HLF-------------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----ERE  142 (473)
T ss_pred             HHHHHHcC---CCC-------------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHH
Confidence            65555321   111                   001234445555566678888888889999999886433     277


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhh-------cchhHHHHHHHHHHHHHHHH
Q 018406          229 RFFNFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~-------~gw~~~f~i~~~~~~i~~~~  275 (356)
                      +.+++.....++|+.+.+.+...+.+.       .+|++...+.+++.++..++
T Consensus       143 ~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~  196 (473)
T PRK10429        143 QLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII  196 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            777776666677766655544433222       24555544444444433333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.14  E-value=9.9e-09  Score=98.42  Aligned_cols=161  Identities=14%  Similarity=0.090  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~  151 (356)
                      +...+...+....++....+.+.|+.+++|+++.+.+.+.....++..++.+++|+++||+ |||+.+.++.++..++.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~  287 (385)
T TIGR00710       209 WGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAV  287 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence            3334444444555566666778888889999999999999999999999999999999998 999999888877777766


Q ss_pred             HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (356)
                      ++......    ..                   .....+++..++.|+|.+...+.......|.+|+ .      +++..
T Consensus       288 ~~~~~~~~----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~g~~~  337 (385)
T TIGR00710       288 LLEITAIL----GL-------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-V------AGTAS  337 (385)
T ss_pred             HHHHHHHh----cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c------chHHH
Confidence            65543210    00                   0234445556678888888888888888888763 3      67788


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHH
Q 018406          232 NFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGA  264 (356)
Q Consensus       232 ~~~~~~~~i-G~~i~p~i~~~i~~~~gw~~~f~i  264 (356)
                      ++++..... |+..++ +.+.+.+..+|...+..
T Consensus       338 ~~~~~~~~~~g~i~~~-~~~~~~~~~~~~~~~~~  370 (385)
T TIGR00710       338 ALFGTLRLVLGAIVGY-LVSLIHGNTAWPMSLSC  370 (385)
T ss_pred             HHHHHHHHHHHHHHHH-HHHhccccChHHHHHHH
Confidence            887766654 444455 44555444445444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.13  E-value=9e-09  Score=101.06  Aligned_cols=160  Identities=14%  Similarity=0.008  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAGL  150 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR-r~~i~~~~~l~~~g~  150 (356)
                      ..+.+..++...++-....+++.|+++++|++..+.+++.+.+.++..++++++|.++||+ || |+++.++.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~   83 (418)
T TIGR00889         5 AKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLL   83 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Confidence            3455555665555555668899999999999999999999999999999999999999997 65 778777777766655


Q ss_pred             HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhh--------ccCCCCChh
Q 018406          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGA--------DQFDERSKD  222 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~a--------d~f~~~~~~  222 (356)
                      .+..+..                            +...+++.+++.+++.+...+...+...        |......  
T Consensus        84 ~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~--  133 (418)
T TIGR00889        84 FFAAQVT----------------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP--  133 (418)
T ss_pred             HHHHHhc----------------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC--
Confidence            5544431                            3566677777777766555444433321        2111111  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN  273 (356)
Q Consensus       223 ~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~  273 (356)
                          +.+.++      .+|.+++|.+++++.....|. .|++.+++.++.+
T Consensus       134 ----~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~  173 (418)
T TIGR00889       134 ----PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG  173 (418)
T ss_pred             ----Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH
Confidence                333332      367888888888773332343 4555555444333

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.13  E-value=3.5e-09  Score=116.23  Aligned_cols=163  Identities=10%  Similarity=-0.007  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~-~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      ++..++..++..+..+.+..+++.|+.+.+|++.. ..+.+.+...++..++.+++|+++||+ ++++++.++.++..++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~  312 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS  312 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence            34444444444455556667889999999999998 899999999999999999999999998 9998888888777776


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      .+++.+..                            +...++++.++.|++.++..+...+++.+.+|++.      |++
T Consensus       313 ~~~~~~~~----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~  358 (1146)
T PRK08633        313 LFLLPTAP----------------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGK  358 (1146)
T ss_pred             HHHHHHhh----------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhh
Confidence            66655432                            35566677788899988888888999999999887      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHH
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIA  268 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~-~gw~~~f~i~~~~  268 (356)
                      +++++++..++|.++++.+++.+... .++...|.+.+.+
T Consensus       359 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        359 VLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            99999998899988888776655432 2344455444433

>TIGR00896 CynX cyanate transporter

Probab=99.12  E-value=4.6e-09  Score=100.34  Aligned_cols=155  Identities=15%  Similarity=0.100  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      ..+...+..++....++++..+++.|+++ +|++..+.+.+.+.+.++..++.++.|+++||+-+||+.+.++.++..++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~  276 (355)
T TIGR00896       198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG  276 (355)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence            34555555566667777888889999864 79999999999999999999999999999999724566667777777777


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      .+.+.+...                           +...  ...++.|++.+...+...+...+..++++     +++.
T Consensus       277 ~~~~~~~~~---------------------------~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~  322 (355)
T TIGR00896       277 LCGLLFAPM---------------------------HGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAA  322 (355)
T ss_pred             HHHHHHhhh---------------------------hHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHH
Confidence            665554310                           1111  13456788888888777777766655433     3677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc-hh
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WG  259 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~  259 (356)
                      .+++.+...++|..++|.+.+++.++.| |.
T Consensus       323 ~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       323 LSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            7788777788889999999999998876 43

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10054 putative transporter; Provisional

Probab=99.12  E-value=3.5e-09  Score=103.09  Aligned_cols=171  Identities=12%  Similarity=-0.002  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      ++...+..++..+.+..+..+++.|+...  .+.+....+.+...+.+......++.|.+.||+ |+|+.+.++.++..+
T Consensus       208 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~  286 (395)
T PRK10054        208 LLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVI  286 (395)
T ss_pred             ehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHH
Confidence            34444445555555444555666676543  344555566677776666666678889999998 999999888888877


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      +.+.+.+..+                           +.+.++++.++.++|.+...+....++.+..|++.      ++
T Consensus       287 ~~~~~~~~~~---------------------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~  333 (395)
T PRK10054        287 GLVGFIFSGN---------------------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KA  333 (395)
T ss_pred             HHHHHHHcch---------------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ce
Confidence            7766654311                           34555667778888888777888888889888766      67


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      .+++..+ ...+|..+||.++|++.++.|....|++.+++..++.++.
T Consensus       334 ~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  380 (395)
T PRK10054        334 SYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM  380 (395)
T ss_pred             ehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence            7777654 4568999999999999999998888877666555444433

>PRK11462 putative transporter; Provisional

Probab=99.11  E-value=1.4e-08  Score=101.04  Aligned_cols=180  Identities=10%  Similarity=0.049  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHHH-HHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTTIYL  147 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GRr~~i~-~~~~l~~  147 (356)
                      +.-....+...+.+..+..++..|+++.+|+++..++.+..+.-+.-.+.-|+.|.++||.   +|||+..+ ++.+.+.
T Consensus        12 ~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~   91 (460)
T PRK11462         12 IGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFG   91 (460)
T ss_pred             HhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHH
Confidence            3333455555666666777899999999999999999999999999999999999999974   59876555 5556666


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      ++.+++...   |...+                   ......+++...+..++......+..++.+|+.++.+     .|
T Consensus        92 i~~~llf~~---p~~s~-------------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eR  144 (460)
T PRK11462         92 IVCVLAYST---PDLSM-------------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QR  144 (460)
T ss_pred             HHHHHHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HH
Confidence            666555432   11111                   1234455555566788888888899999999988644     38


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHHHHHHHHHh
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~-------gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      ++..++.....++|..+++.+...+.+..       +|.....+.+++.++..++.+.
T Consensus       145 t~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~  202 (460)
T PRK11462        145 ISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF  202 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            88999988888888888877665544332       4655555555544444433333

>PRK09848 glucuronide transporter; Provisional

Probab=99.11  E-value=4.9e-09  Score=103.60  Aligned_cols=162  Identities=14%  Similarity=0.115  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      .++...+..++...+++......+.|++..+|.+....+.......++..++.++.++++||+ |+|+++.++.++..++
T Consensus       229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~  307 (448)
T PRK09848        229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG  307 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence            345555566666666666666666677777887766555545545666778899999999998 9999999999888888


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh-hhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD  228 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~-~~~r~  228 (356)
                      .+.+.+..       .                   .+.+.+++..++.++|.+...+...++.+|..|.++-+. .++.+
T Consensus       308 ~~~~~~~~-------~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G  361 (448)
T PRK09848        308 YLLFFWVS-------V-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG  361 (448)
T ss_pred             HHHHHHcC-------c-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh
Confidence            76665421       0                   135556667788899999999999999999988543211 12358


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (356)
Q Consensus       229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw  258 (356)
                      ..++.+++...+|.++++.+.+++.+..||
T Consensus       362 ~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        362 LTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            888899999999999999999888766555

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.11  E-value=2.2e-08  Score=97.39  Aligned_cols=164  Identities=10%  Similarity=-0.020  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~  150 (356)
                      ++..+...++.....++...+++.++.+++|++..+.+.+...+.++..++.++.+++.||. +|+..+. +.++..+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~-~~~~~~~~~  295 (394)
T PRK10213        218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAG-APLVLAVSA  295 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHH-HHHHHHHHH
Confidence            44444444555555556666664555567899999999999999999999999999999995 5554444 333333332


Q ss_pred             HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (356)
                      +.+....                           .+.+.+++..++.|++.+...+...+++.+..|++       .+..
T Consensus       296 ~~l~~~~---------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~  341 (394)
T PRK10213        296 LVLTLWG---------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKA  341 (394)
T ss_pred             HHHHHHh---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHH
Confidence            2222221                           13455666778889998888888888888887733       3444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG  270 (356)
Q Consensus       231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~  270 (356)
                      .+++....++|..+|+.++|++.+..|++..+...+++.+
T Consensus       342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~  381 (394)
T PRK10213        342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML  381 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence            5556667788999999999999998888877776655443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.11  E-value=2.8e-09  Score=101.87  Aligned_cols=173  Identities=13%  Similarity=0.104  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      .+..-++..++-+=...++......|..+++|++..+...+....++.+.++++++|+|.||+ |-|+++.++.+++.+.
T Consensus       253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~  331 (438)
T COG2270         253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA  331 (438)
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence            444444555555555556777778899999999999999999999999999999999999997 9999999999888776


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      .+...+..                            ....+++.-.+.|+..|+.++..-++.+++.|+++      -+.
T Consensus       332 ~~~~~~~~----------------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~  377 (438)
T COG2270         332 ALYLIFLE----------------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGR  377 (438)
T ss_pred             HHHHHHcc----------------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccc
Confidence            66555432                            12334444568889999999999999999999887      799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHH
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~  277 (356)
                      +|++|++..-..+.+||+..+.+.+.+| -|.++....++.++++++++
T Consensus       378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~  426 (438)
T COG2270         378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL  426 (438)
T ss_pred             eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence            9999999999999999999999888776 67777666666666655543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.09  E-value=1.7e-12  Score=128.05  Aligned_cols=134  Identities=20%  Similarity=0.242  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchh
Q 018406          106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW  185 (356)
Q Consensus       106 ~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (356)
                      ..++..+...++..+|.+++|+++||+ |||++++++.++.+++.++..++..                         ..
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~-------------------------~~  100 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPS-------------------------YN  100 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccccc-------------------------cc
Confidence            467888999999999999999999998 9999999999999999988877631                         01


Q ss_pred             hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh---hcchhHHH
Q 018406          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF  262 (356)
Q Consensus       186 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~---~~gw~~~f  262 (356)
                      +...+.++|++.|+|.|+..+..+.++.|..|++.      |+....+.+....+|..++.++...+..   ..+||+.+
T Consensus       101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~  174 (451)
T PF00083_consen  101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL  174 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence            47789999999999999999999999999999887      8888888888888888887765543322   23599888


Q ss_pred             HHHHHHHHH
Q 018406          263 GALAIAMGI  271 (356)
Q Consensus       263 ~i~~~~~~i  271 (356)
                      .+..+..++
T Consensus       175 ~~~~~~~l~  183 (451)
T PF00083_consen  175 IFGAIPSLL  183 (451)
T ss_pred             ccccccccc
Confidence            776665433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.09  E-value=3.2e-08  Score=96.40  Aligned_cols=151  Identities=15%  Similarity=0.207  Sum_probs=101.0

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 018406           91 NMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (356)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~-~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  169 (356)
                      ..+.|+.+++|++..+.+.+.... .++..++.+++|+++||+ |||+.+.++.++..+..+.+......    ++    
T Consensus       231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~----~~----  301 (402)
T PRK11902        231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT----PK----  301 (402)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc----CC----
Confidence            344567778999999888887654 456888999999999998 99998877776665554433221110    00    


Q ss_pred             cccccccCCCCCcchhhHHHHHHHH----HHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 018406          170 DRISQLLGSCEPAKSWQMLYLYTVL----YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA  245 (356)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~----~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~  245 (356)
                                      +.+.++++.    +..+++.+...+....+..+.+|.++      ++    ++.....+|..++
T Consensus       302 ----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~l~~~~~  355 (402)
T PRK11902        302 ----------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------YA----LLSALASVGRVYV  355 (402)
T ss_pred             ----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------HH----HHHHHHHHHHHHH
Confidence                            233334333    34556666667777778888777544      33    3333345566555


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       246 p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      ..++|++.+..||+..|.+.+++.++++++.
T Consensus       356 ~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        356 GPTSGYLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            5688999999999999988777776665544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.07  E-value=5.1e-09  Score=115.10  Aligned_cols=184  Identities=6%  Similarity=-0.174  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      .++..++..++..+.++++.++++.|+.+.+|.+....+.+.+.+.++..++.++.|+++|++ ++++.+.++.++..++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~  304 (1140)
T PRK06814        226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF  304 (1140)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence            455566666666666677778899999999999999999999999999999999999999987 6666555555554444


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      .+.+.+... ....+....+      ...+-. ...+.+.++++.++.|++.+...+...+++.+.+|++.      +|+
T Consensus       305 ~~~l~~~~~-~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~  370 (1140)
T PRK06814        305 GLDLAFASS-SVPAEPAQLK------SILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RAR  370 (1140)
T ss_pred             HHHHHhccc-cccccccccc------chhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------cee
Confidence            433332100 0000000000      000000 00134566677788899999988899999999999888      999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHH
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA  268 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~-~~gw~~~f~i~~~~  268 (356)
                      +++.+++..++|..+++++.+.+.+ ..++...|.+.+++
T Consensus       371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            9999999999999999999988874 34566555554443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.07  E-value=8.6e-09  Score=96.71  Aligned_cols=185  Identities=13%  Similarity=0.045  Sum_probs=124.8

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccc
Q 018406           93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI  172 (356)
Q Consensus        93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  172 (356)
                      ..-+....|.+..+...+......+..+++..+|.++|++ |||+...+..+...+..++-..+       |        
T Consensus       101 ~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s-------p--------  164 (528)
T KOG0253|consen  101 LPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS-------P--------  164 (528)
T ss_pred             HHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC-------C--------
Confidence            3345566788888899999999999999999999999998 99999887777666555443332       2        


Q ss_pred             ccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018406          173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI  252 (356)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i  252 (356)
                                   ++..+++.+.+.++|.|+ .+...+.-.|..|..+      |....-.. ....+|..+...+.-.+
T Consensus       165 -------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~v  223 (528)
T KOG0253|consen  165 -------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGV  223 (528)
T ss_pred             -------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHH
Confidence                         577889999999999999 7888888889988766      44444333 34567777777666666


Q ss_pred             HhhcchhHHHHHHHHHHHHHHHHHHhhcccccc-cCCCCChhHHHHHHHHHHHhccccCCCCccc
Q 018406          253 QMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH-RLPGGSPLTRVAQVLVAAFRKRHAAFSSSEL  316 (356)
Q Consensus       253 ~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~  316 (356)
                      ..+.||||-+........+.+++ .+..+.-++ .-.+|++ .+++..+.+.-|.+..+.|--..
T Consensus       224 m~~~gwr~~l~~~~~pl~~~a~f-~~w~~ESpRf~~~~G~~-~kAletL~kiArmNg~qlplgvl  286 (528)
T KOG0253|consen  224 MSNFGWRYLLFTSSTPLMFAARF-LVWVYESPRFYLAKGDD-YKALETLHKIARMNGKQLPLGVL  286 (528)
T ss_pred             HHhhhHHHHHHHHHhHHHHHHHH-HhhcccCcchhhhcCCh-HHHHHHHHHHHHhcCCCCCccee
Confidence            67789998776655443333222 222222111 1123443 34456666666655666664433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.06  E-value=1.9e-08  Score=101.22  Aligned_cols=164  Identities=10%  Similarity=0.051  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHh
Q 018406           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA  157 (356)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~  157 (356)
                      .++..+....+...+|.+..+.+|.+....+.+.+++.++..++.++.+.+.+++ ++++.+..+.+++.++.+.++++.
T Consensus       227 ~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~lal~~  305 (524)
T PF05977_consen  227 SFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLLALSP  305 (524)
T ss_pred             HHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHHhcch
Confidence            3333333334455578888889999999999999999999999999999999997 999988888888877776666542


Q ss_pred             hccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHH
Q 018406          158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~  237 (356)
                                                  +.+..+++.++.|++.........+..-...|++.      ||+.+++++..
T Consensus       306 ----------------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~  351 (524)
T PF05977_consen  306 ----------------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMV  351 (524)
T ss_pred             ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHH
Confidence                                        46666777888898888888888888888888877      99999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       238 ~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                      ...+..+|.++.|++.+.+|-+..+.+.+++++++.++.
T Consensus       352 ~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  352 FFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888877766655554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.06  E-value=8.9e-10  Score=108.30  Aligned_cols=178  Identities=13%  Similarity=0.053  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcchhHHHH-HHHHHHHHHHHHH
Q 018406           79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYWTIA-IFTTIYLAGLTGI  153 (356)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD----~~~GRr~~i~-~~~~l~~~g~~~~  153 (356)
                      +...+.+..+..++..|+++.+|+++...+.+..+..+...+..|+.|.++|    |+ |||+.++ ++.++..++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll   89 (428)
T PF13347_consen   11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL   89 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence            4555666666678889999999999999999999999999999999999999    66 9876555 6667777776666


Q ss_pred             HHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHH
Q 018406          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF  233 (356)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~  233 (356)
                      ....  |    .              ..+.......+++..++..++......+..++++|+.++.+     +|.+..++
T Consensus        90 f~~~--p----~--------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~  144 (428)
T PF13347_consen   90 FSPP--P----A--------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSW  144 (428)
T ss_pred             hccc--c----c--------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHH
Confidence            5420  0    0              00011134445666667788888899999999999998654     37888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHHHHHHHHHhhccc
Q 018406          234 FYLSVTVGAIVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPL  282 (356)
Q Consensus       234 ~~~~~~iG~~i~p~i~~~i~~~~-------gw~~~f~i~~~~~~i~~~~~~~~~~~  282 (356)
                      ..+...+|..+...+.+.+.+..       +|++.+.+.+++.++..++.....++
T Consensus       145 ~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  145 RMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            87777787766655555444322       57777777766666655555555444

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.05  E-value=1.4e-08  Score=99.05  Aligned_cols=153  Identities=11%  Similarity=0.034  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 018406           88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (356)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~  167 (356)
                      +..+++.|+++..+ +..+.+.+.+...++..++....+++.|+.++.++.+..+.++..++.+++....          
T Consensus       227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~----------  295 (400)
T PRK11646        227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS----------  295 (400)
T ss_pred             HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh----------
Confidence            44567788876555 5566777766665555544444566665543766677777777777766555431          


Q ss_pred             CccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (356)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~  247 (356)
                                        +...+++...+.++|.+...+...++..+..|++.      +++.+++++....+|..+||.
T Consensus       296 ------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~  351 (400)
T PRK11646        296 ------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYI  351 (400)
T ss_pred             ------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhccc
Confidence                              24445555667778877777888899999999877      899999999999999999999


Q ss_pred             HHHHHHhhc---c-hhHHHHHHHHHHHHHHHH
Q 018406          248 LVVYIQMEH---G-WGSAFGALAIAMGISNML  275 (356)
Q Consensus       248 i~~~i~~~~---g-w~~~f~i~~~~~~i~~~~  275 (356)
                      +.|++.+..   + ....|.+..++.++.++.
T Consensus       352 l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        352 GGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             chHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            999998764   2 234555544444444433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.04  E-value=3e-08  Score=93.07  Aligned_cols=165  Identities=15%  Similarity=0.123  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      ..|.+.+..-+.++.+|.+..++|.++. +.|+|..+++..++...+......+++-.+++|.-.+|+......+++.+|
T Consensus       209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G  287 (395)
T COG2807         209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG  287 (395)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            3588888888899999999999999986 689999999999999999999999999999998767899999999999999


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      .+.+.+..       .                    +...+.  .+++|+|.|+..+....++.+...+.+     .-+.
T Consensus       288 ~~G~~~~P-------~--------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~-----~Aa~  333 (395)
T COG2807         288 LVGLLLAP-------G--------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA-----IAAA  333 (395)
T ss_pred             HHHHHHhh-------h--------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH-----HHHH
Confidence            98887652       1                    233333  478999999999999999999887644     2566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHH
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM  269 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~  269 (356)
                      ..++-+-...+=+++||++.|++-|..| |...+...+.+.
T Consensus       334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~  374 (395)
T COG2807         334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT  374 (395)
T ss_pred             HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence            6666676677778889999999999886 877766554443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.04  E-value=8.4e-09  Score=101.37  Aligned_cols=162  Identities=14%  Similarity=0.100  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      |....+++..++..++.....+..+.|.+..+|.+ ...+.+..+..++..++.++.++++||+ |+|+++.++.++.++
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            44566777777777777666667777777778777 5567777788899999999999999998 999999999999999


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChh-hhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHL  227 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~-~~~~r  227 (356)
                      +.+++.+...                          .+.+.+++..++.|++.++......++++|..+.++-+ .+++-
T Consensus       303 ~~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~  356 (428)
T PF13347_consen  303 GFLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRRE  356 (428)
T ss_pred             HHHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCch
Confidence            8888777531                          15778888889999999999999999999999855432 23346


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw  258 (356)
                      |..++.+.+...+|.+++..+.+.+.+..|+
T Consensus       357 g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  357 GMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            8888889999999999999999888766554

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.02  E-value=7.5e-08  Score=93.27  Aligned_cols=177  Identities=11%  Similarity=-0.035  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH--HHHHHHHHHHHHHH-HHHHHhhcchhHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV--NNFLGISQASSVLG-GFLADAYLGRYWTIAIFTTIYL  147 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~--~~~~~~~~~~~~~~-G~lsD~~~GRr~~i~~~~~l~~  147 (356)
                      ...+....+.+.+.+..+...++.|++ +.|.+..+.+...  ........+.+++. ++++||+ ||||.+++...+..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            344555566666666556666777765 6799999998863  44455554455444 6689997 99998766653322


Q ss_pred             H-HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406          148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (356)
Q Consensus       148 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (356)
                      . ....+....  +.  .                    .....+....++.++..+...+..-++..|..+.+.      
T Consensus        81 ~~~~~~~~~~~--~~--~--------------------~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------  130 (390)
T TIGR02718        81 SACLASLALVG--PD--V--------------------AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------  130 (390)
T ss_pred             HHHHHHHHcCC--cc--h--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------
Confidence            2 222222110  00  0                    012233334444556666666666667777766554      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 018406          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (356)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~  279 (356)
                      ++...+.+..+..+|..+++.+.+++.+..||+..|++.+++.++..+..+..
T Consensus       131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            66667777777788999999888899999999999998887766555444333

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.01  E-value=3.5e-08  Score=95.29  Aligned_cols=166  Identities=10%  Similarity=-0.034  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hHHHHH-HHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR---YWTIAI-FTT  144 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR---r~~i~~-~~~  144 (356)
                      +.+|.+.+..++....+|++.++++.|+. +.|++.. ++....+..+...++   .++++||+ .|   |+.... ..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence            45688888899999999999999999996 4678764 454444444444433   57888886 54   333222 222


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      +..++...+....                            +....++...+.+++..+..+...++.+|.+|++.    
T Consensus       266 ~~a~~~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~----  313 (368)
T TIGR00903       266 LIAAFFLALAFEL----------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL----  313 (368)
T ss_pred             HHHHHHHHHHHcc----------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh----
Confidence            2222222222110                            12223334455566666666778899999999988    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                        |++..++.+...++|+.++|.+.+.+..  +....|.+.++..+++.+..
T Consensus       314 --rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       314 --HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             --cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence              9999999999999999999998887763  55556666666555554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00898 2A0119 cation transport protein

Probab=99.00  E-value=1.4e-08  Score=101.64  Aligned_cols=129  Identities=14%  Similarity=0.044  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHH
Q 018406          113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT  192 (356)
Q Consensus       113 ~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (356)
                      ...+....+.+++++++||+ |||+++.++.++..++.+++.+...                          ......++
T Consensus       363 ~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~~~  415 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV--------------------------DLYFLRTA  415 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC--------------------------CchHHHHH
Confidence            34556677888999999998 9999999988887777665554311                          01223333


Q ss_pred             HHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406          193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (356)
Q Consensus       193 ~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~  272 (356)
                      ..++.+++.++..+....+.+|.+|++.      |+..+++.+....+|+.++|.+.+ + ...++...+.+.+++.+++
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~  487 (505)
T TIGR00898       416 LAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLA  487 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHH
Confidence            4455556666667788899999999877      899999999999999999998888 3 3445566666666655554


Q ss_pred             HHHH
Q 018406          273 NMLF  276 (356)
Q Consensus       273 ~~~~  276 (356)
                      .++.
T Consensus       488 ~~~~  491 (505)
T TIGR00898       488 GILT  491 (505)
T ss_pred             HHHH
Confidence            4443

>PRK09848 glucuronide transporter; Provisional

Probab=99.00  E-value=5e-08  Score=96.45  Aligned_cols=157  Identities=11%  Similarity=0.063  Sum_probs=101.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHH-HHHH
Q 018406           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFT  143 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GRr~~i-~~~~  143 (356)
                      ++..+.-.+..+...+.+..+..++..|+++.+|++..+++.+..+..+...+..++.|+++||.   +|||+.+ +++.
T Consensus         7 ~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~   86 (448)
T PRK09848          7 WRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGT   86 (448)
T ss_pred             HHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHH
Confidence            33334444455566677666777788899999999999999999999999999999999999995   4777755 4555


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (356)
Q Consensus       144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~  223 (356)
                      +...+..+++....  ....+                   ......+++...+.+++.+...++..++..++..+.+  +
T Consensus        87 ~~~~~~~~~~~~~~--~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~  143 (448)
T PRK09848         87 APLMIFSVLVFWVP--TDWSH-------------------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--S  143 (448)
T ss_pred             HHHHHHHHHHHhCc--CCCCc-------------------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--H
Confidence            54444433332110  00000                   1123444445566788888888787787777776533  2


Q ss_pred             hhhhhhHHHHHHHH-----HHHHHHHHHHHHH
Q 018406          224 KTHLDRFFNFFYLS-----VTVGAIVAFTLVV  250 (356)
Q Consensus       224 ~~~r~~~~~~~~~~-----~~iG~~i~p~i~~  250 (356)
                         |....++..++     .+++..++|++.+
T Consensus       144 ---r~~~~~~r~~~~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848        144 ---RARLGAARGIAASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               55555554443     3345555665554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.00  E-value=6.5e-08  Score=90.86  Aligned_cols=161  Identities=19%  Similarity=0.179  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 018406           81 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK  160 (356)
Q Consensus        81 ~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~  160 (356)
                      -+-...++ ..+..-+.+++|++.+.++.+.++..+...+.+++..+|+-|+ |-.+.+..+.++..+|.++=...    
T Consensus        24 LR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~----   97 (395)
T COG2807          24 LRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG----   97 (395)
T ss_pred             cchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc----
Confidence            34454444 4466778999999999999999999999999999999999997 99999999999998888775542    


Q ss_pred             ccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHH
Q 018406          161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV  240 (356)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~i  240 (356)
                                               +...++.+-.+.|.|.+......|+.+-+-||.+       .+..++.|..+.++
T Consensus        98 -------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~  145 (395)
T COG2807          98 -------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGA  145 (395)
T ss_pred             -------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHH
Confidence                                     3677888889999999999999999999999965       48889999999999


Q ss_pred             HHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHhh
Q 018406          241 GAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFIG  279 (356)
Q Consensus       241 G~~i~p~i~~~i~~~~-gw~~~f~i~~~~~~i~~~~~~~~  279 (356)
                      |+++++.+...+.++. ||+....+=+...++++++.+..
T Consensus       146 ~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         146 GAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             HHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999888877 69988776666666666665554

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.97  E-value=1.5e-07  Score=88.70  Aligned_cols=155  Identities=16%  Similarity=0.114  Sum_probs=107.5

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccc
Q 018406           93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI  172 (356)
Q Consensus        93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  172 (356)
                      ...+-+++|++..+.+.+.....+...+..++.|.++||+ |||+..++.++++.+..+....                 
T Consensus        57 ~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~-----------------  118 (354)
T PF05631_consen   57 LYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS-----------------  118 (354)
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc-----------------
Confidence            3344568999999999999999999999999999999998 9999999999988877653221                 


Q ss_pred             ccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHH
Q 018406          173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVY  251 (356)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~-~~~~iG~~i~p~i~~~  251 (356)
                                  .+...++++|++.|++.....++.-+........+.-++ ...+..++... +...+-++++.+++.+
T Consensus       119 ------------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~  185 (354)
T PF05631_consen  119 ------------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANV  185 (354)
T ss_pred             ------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHH
Confidence                        258889999999999999988887776655444332111 11344444332 2222333444445556


Q ss_pred             HHhhcch--hHHHHHHHHHHHHHHHHHHh
Q 018406          252 IQMEHGW--GSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       252 i~~~~gw--~~~f~i~~~~~~i~~~~~~~  278 (356)
                      +.+..+.  ..+|.....+.+++.+++..
T Consensus       186 l~~~~~~g~vaPF~~a~~~l~~~~~~I~~  214 (354)
T PF05631_consen  186 LADWFGFGPVAPFDAAIVLLAVAAVLILK  214 (354)
T ss_pred             HHHHhCCCCcchHHHHHHHHHHHHHHHHh
Confidence            6666554  67888777776666655443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.97  E-value=3.1e-08  Score=94.56  Aligned_cols=145  Identities=10%  Similarity=0.038  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      .++.+++..++..++++.+.+.++.|+++ +|++..+.+.+..+.. ++..++.+++|+++||+ |||+.+.++.++..+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            35666666666778888888889999876 9999999888887655 57788999999999998 999998888877776


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      +..+..+.....   .+            +.  ....+.+.++.+.++.+++.+...+...++..|.+|++.      ++
T Consensus       288 ~~~~~~~~~~~~---~~------------~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g  344 (356)
T TIGR00901       288 TNAGFVWLASNG---HH------------DG--ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GA  344 (356)
T ss_pred             HHHHHHHHHhcC---cc------------cc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cH
Confidence            655444321100   00            00  000134556667778899999999999999999999988      89


Q ss_pred             hHHHHHHHHHH
Q 018406          229 RFFNFFYLSVT  239 (356)
Q Consensus       229 ~~~~~~~~~~~  239 (356)
                      +.+++++...+
T Consensus       345 ~~~g~~~~~~~  355 (356)
T TIGR00901       345 TQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHh
Confidence            99988776543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.97  E-value=4.7e-09  Score=100.99  Aligned_cols=121  Identities=16%  Similarity=0.140  Sum_probs=94.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCC
Q 018406          102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP  181 (356)
Q Consensus       102 ~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (356)
                      ++....+.+..+..++..+|+++.|+++|++ |||++|...+++++++.+++.++                     .|..
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s---------------------~~~~  138 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLS---------------------VGTT  138 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccC---------------------CCCC
Confidence            6677888889999999999999999999998 99999999999999999855543                     1233


Q ss_pred             cchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHH----HHHHHHHHHHHHHHHH
Q 018406          182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF----YLSVTVGAIVAFTLVV  250 (356)
Q Consensus       182 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~----~~~~~iG~~i~p~i~~  250 (356)
                      +...-+.++...|+++|+|.|+=.|...+..+|....+.      ||.+.++.    .++...|+.++-++.+
T Consensus       139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~  205 (538)
T KOG0252|consen  139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSA  205 (538)
T ss_pred             CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHH
Confidence            333467889999999999999999999999999877665      66655543    3444555555544443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.94  E-value=7.5e-08  Score=96.04  Aligned_cols=165  Identities=13%  Similarity=-0.015  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      |.++.+++..++..+..+......+.|++..++ +....+.+..+..++..++.++.++++||+ |+|++++++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            556666677777766666555554444433333 445555666666678888899999999998 999999988887776


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC-hhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS-KDYKTHL  227 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~-~~~~~~r  227 (356)
                      +.+.+.+....    +.                   .+...+++..++.+++.+...+...++++|..|.++ +..+++.
T Consensus       309 ~~~~~~~~~~~----~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~  365 (473)
T PRK10429        309 SCGVLLLMGLA----AP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE  365 (473)
T ss_pred             HHHHHHHHhcc----Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence            66555432100    00                   135556666677889989888999999999987432 1222345


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw  258 (356)
                      |..++.+.+..-+|.++++.+.+++.+..|+
T Consensus       366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            6678888899999999999999998776665

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.94  E-value=1.5e-07  Score=91.66  Aligned_cols=155  Identities=6%  Similarity=-0.066  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 018406           85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP  164 (356)
Q Consensus        85 ~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~  164 (356)
                      ...+...++.|+++.+|++..+.+.+.....++..++.++.+++.|++ ++++++.++.++ .+..+.+...        
T Consensus       221 ~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~--------  290 (393)
T PRK11195        221 GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ--------  290 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH--------
Confidence            334444566788888999999999999999999999999999999997 988888777433 2222222221        


Q ss_pred             CCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 018406          165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV  244 (356)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i  244 (356)
                                          .+.+...+..++.|++.+...++..+.+.+..|++.     ++++.++..++..++|..+
T Consensus       291 --------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~  345 (393)
T PRK11195        291 --------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLL  345 (393)
T ss_pred             --------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHH
Confidence                                134445566678888888877777787777544332     2688999999999999999


Q ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406          245 AFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       245 ~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~  275 (356)
                      +..+.+.+ ..+|-++.+.+.....++.+.+
T Consensus       346 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        346 MLGLYSLL-VKLGVPVVAVIVGFGLLVALAM  375 (393)
T ss_pred             HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence            99888755 5677666666655544444333

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.92  E-value=3.4e-08  Score=97.95  Aligned_cols=182  Identities=16%  Similarity=0.171  Sum_probs=120.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hHHHHHHH
Q 018406           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR----YWTIAIFT  143 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR----r~~i~~~~  143 (356)
                      -+.+|.+.+..++...+++.+..++|.|+.+.+|++..+.+...++..+...+..+++|.++|+...|    +.+..+..
T Consensus       257 s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn  336 (466)
T KOG2532|consen  257 SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFN  336 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999997331    11222222


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (356)
Q Consensus       144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~  223 (356)
                      .+...+...+.+...   +.    .|.          .. ......+.++..+.|+..++..-+    ..|..|.+    
T Consensus       337 ~i~~~~~ai~l~~l~---~~----~~~----------~~-~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~apq~----  390 (466)
T KOG2532|consen  337 TIAFGGPAVFLLVLA---FT----SDE----------HR-LLAVILLTIAIGLSGFNISGFYKN----HQDIAPQH----  390 (466)
T ss_pred             hHHHHHHHHHHHeee---ec----CCC----------cc-hHHHHHHHHHHHHcccchhhhHhh----hhhccchH----
Confidence            222222211111110   00    111          00 011222222223333333332222    22223322    


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHHHh
Q 018406          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       224 ~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~---~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                         -+.++++.++..++.+.++|.+.+++...   ..|++.|.+.+++.+++.+++.+
T Consensus       391 ---a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  391 ---AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence               57888899999999999999999988832   36999999999988877766544

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.91  E-value=3.4e-07  Score=87.82  Aligned_cols=146  Identities=10%  Similarity=-0.098  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~  151 (356)
                      +..++..++.....+.+..+.+.|+.+.+|++..+.+.......++..++.+++|+++||+ |||+++.++.++..+..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~  275 (377)
T PRK11102        197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGI  275 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence            3334444444445555556667778888999999999999999999999999999999998 999999988876544333


Q ss_pred             HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (356)
                      .+......    +                    .....+.++..+.+.+.+...........|..| +.      +++..
T Consensus       276 ~~~~~~~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~  324 (377)
T PRK11102        276 WLVVSALL----D--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTAS  324 (377)
T ss_pred             HHHHHHHH----h--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHH
Confidence            33222100    0                    023333444444444445555555566667666 33      56666


Q ss_pred             HHHHHH-HHHHHHHHHHHH
Q 018406          232 NFFYLS-VTVGAIVAFTLV  249 (356)
Q Consensus       232 ~~~~~~-~~iG~~i~p~i~  249 (356)
                      +.++.. ..+|+.+++.+.
T Consensus       325 ~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        325 SLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            665543 345556666543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.91  E-value=2e-08  Score=94.78  Aligned_cols=143  Identities=20%  Similarity=0.245  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~  150 (356)
                      |..+...++..+.++.+..+++.|+.+.+|++ ..+.+.+..+..++..++.++.|+++||+ |+++.+.+......++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~  287 (352)
T PF07690_consen  209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGA  287 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHH
Confidence            33444455555566677788899989999999 78999999999999999999999999997 98888777777766666


Q ss_pred             HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (356)
                      +.+.+...                         ..+....++..++.|++.+...+....+..|.+|++.      +++.
T Consensus       288 ~~~~~~~~-------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~  336 (352)
T PF07690_consen  288 LGLLLLPF-------------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTA  336 (352)
T ss_dssp             HHHCCSHH-------------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHH
T ss_pred             HHHHHHHH-------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHH
Confidence            55544321                         0134566667788999999999999999999999877      9999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018406          231 FNFFYLSVTVGAIVAF  246 (356)
Q Consensus       231 ~~~~~~~~~iG~~i~p  246 (356)
                      .++++...++|+.++|
T Consensus       337 ~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  337 FGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC
Confidence            9999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.89  E-value=2.6e-07  Score=91.33  Aligned_cols=186  Identities=12%  Similarity=0.018  Sum_probs=118.7

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      +..++..+.++.+.++..+..........+.+-.+-|++..++.++.........+..+++.++.||+ |||+.++++..
T Consensus       265 ~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~  343 (485)
T KOG0569|consen  265 PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLS  343 (485)
T ss_pred             cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHH
Confidence            34455567777777776665443444444555567899999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHH-HHHHHHHHHHHhhhc-hhhhhhhhhhccCCCCChh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML-YLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKD  222 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~gig~g~-~~~~~~~~~ad~f~~~~~~  222 (356)
                      +..+..+++.+...+....                    ..-.. ..+++.++..++.+. .-+...-+.+|+||...  
T Consensus       344 ~~~~~~~~~~~~~~l~~~~--------------------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~--  401 (485)
T KOG0569|consen  344 LMAVALLLMSIALFLSNSF--------------------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA--  401 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc--
Confidence            9888887777654321100                    00011 123333333333322 34556677899999887  


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       223 ~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                          |..++.+-.....+..++-.+....+.+..|- ..|.+..+..++..+.++.
T Consensus       402 ----R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~  452 (485)
T KOG0569|consen  402 ----RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYR  452 (485)
T ss_pred             ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHH
Confidence                78877776666555555555455556666553 3444444444444443333

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.89  E-value=3.8e-08  Score=96.75  Aligned_cols=187  Identities=13%  Similarity=0.042  Sum_probs=136.0

Q ss_pred             ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHH
Q 018406           61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWT  138 (356)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR-r~~  138 (356)
                      ....+.+||.+++..+.+++..+.++.+....-.|+++ +.+-+....|++++...++..++.++.|+.+.|. |. |+.
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~P  104 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKP  104 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccC
Confidence            44557889999999999999988888777777778864 3667777889999999999999999999999997 75 778


Q ss_pred             HHHHHHHHHHHHHHH-HHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 018406          139 IAIFTTIYLAGLTGI-TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (356)
Q Consensus       139 i~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~  217 (356)
                      ++.|.++.++|.++- ++...     ++                   ....++.++|++.|+|.|. .+..-+|+++--.
T Consensus       105 li~s~ii~~~g~llY~~l~~~-----~~-------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~  159 (488)
T KOG2325|consen  105 LIVSFLIAIIGNLLYLALAYV-----PN-------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADAST  159 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-----cc-------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccC
Confidence            888999999988887 44321     11                   1478889999999999665 5678889999766


Q ss_pred             CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHhhc---------chhHHHHHHHHHHHHHHHHHHhh
Q 018406          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY----IQMEH---------GWGSAFGALAIAMGISNMLFFIG  279 (356)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~----i~~~~---------gw~~~f~i~~~~~~i~~~~~~~~  279 (356)
                      .++      |.+++.....+..+|..+||.+...    ..+.+         -+..+-|+++++.++.++++.+.
T Consensus       160 ~~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~  228 (488)
T KOG2325|consen  160 VED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFF  228 (488)
T ss_pred             ccc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhh
Confidence            666      6666666555555566666654433    22211         13345566666665555555443

>PRK11043 putative transporter; Provisional

Probab=98.88  E-value=5.8e-07  Score=87.28  Aligned_cols=148  Identities=12%  Similarity=-0.007  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 018406           80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM  159 (356)
Q Consensus        80 ~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~  159 (356)
                      +....++.+..+++.|++ ++|++..+.+.......++..++.++++++.||+ |+|+.+....++..++.+.+......
T Consensus       214 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (401)
T PRK11043        214 ACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL  291 (401)
T ss_pred             HHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334445555666777765 5899999888887777888889999999999997 99987766655555444333222110


Q ss_pred             cccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHH
Q 018406          160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT  239 (356)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~  239 (356)
                      .   .                    .....++++..+.+++.+...+.......+.+|+ .      +++..++++....
T Consensus       292 ~---~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~  341 (401)
T PRK11043        292 S---H--------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQNTLQL  341 (401)
T ss_pred             c---c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHHHHHH
Confidence            0   0                    0234445556677888888888777777777763 3      7888888888777


Q ss_pred             HHHHHHHHHHHHHHhhcchh
Q 018406          240 VGAIVAFTLVVYIQMEHGWG  259 (356)
Q Consensus       240 iG~~i~p~i~~~i~~~~gw~  259 (356)
                      .++.+++.+.+.+.+.....
T Consensus       342 ~~~~~~~~~~g~l~~~~~~~  361 (401)
T PRK11043        342 GLCFLASLLVSALISTPLLT  361 (401)
T ss_pred             HHHHHHHHHHHHccCCChhH
Confidence            78888888888776643333

>PRK09669 putative symporter YagG; Provisional

Probab=98.88  E-value=2e-07  Score=92.11  Aligned_cols=159  Identities=11%  Similarity=0.022  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~  151 (356)
                      +.+++..++...+.. +...+..|+.+..--+....+.+.....+...++.+++++++||+ |+|+.+.++.++..++.+
T Consensus       232 ~~l~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~  309 (444)
T PRK09669        232 RIMFIFNVVLLTAVV-TRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSA  309 (444)
T ss_pred             HHHHHHHHHHHHHHH-HHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence            333444444333332 222334444333222233334455556677778888999999997 999999888776654433


Q ss_pred             HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChh-hhhhhhhH
Q 018406          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRF  230 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~-~~~~r~~~  230 (356)
                      .+.+..      +                    .+...+++..++.|++.++..+...++++|..|.++.+ .+++.+..
T Consensus       310 ~~~~~~------~--------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~  363 (444)
T PRK09669        310 LIFFIP------P--------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLV  363 (444)
T ss_pred             HHHHhC------c--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHH
Confidence            322211      1                    14556677778899999999999999999999844322 22345677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (356)
Q Consensus       231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw  258 (356)
                      ++.+.+...+|.++++.+.+++.+..|+
T Consensus       364 ~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        364 FSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            7888899999999999999998877666

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.87  E-value=5.6e-07  Score=87.08  Aligned_cols=69  Identities=13%  Similarity=0.060  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 018406           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (356)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~  156 (356)
                      .+....+.|+++++|++..+.+.......++..++.++.+++.||+ |||++++++.++..++.+.+.+.
T Consensus       221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~  289 (392)
T PRK10473        221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS  289 (392)
T ss_pred             HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556778888999999999888889999999999999999998 99999999988888877766654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.85  E-value=2.8e-07  Score=90.38  Aligned_cols=160  Identities=11%  Similarity=0.084  Sum_probs=121.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHH-HHHH
Q 018406           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFT  143 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GRr~~i-~~~~  143 (356)
                      ++.-+--...-+..++.+-.+..++..|.+..+|+++..++.+..+.-+.-++.-|+.|.++||.   +||+|.. +++.
T Consensus        11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~   90 (467)
T COG2211          11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA   90 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence            33334444455556666666778899999999999999999999999999999999999999986   6886554 4555


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (356)
Q Consensus       144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~  223 (356)
                      +-+.+..+++..+.+         .+             .+......++..++.+++......+..++.+++-++.+   
T Consensus        91 ip~~i~~~l~F~~p~---------~~-------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~---  145 (467)
T COG2211          91 IPFAIVAVLLFITPD---------FS-------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ---  145 (467)
T ss_pred             HHHHHHHHHHHcCCC---------cc-------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH---
Confidence            667777666665421         01             01245566666788899999999999999999988755   


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (356)
Q Consensus       224 ~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~  254 (356)
                        .|.+..+|..+..++|..+...+...+.+
T Consensus       146 --ER~~l~s~R~~~~~~g~~l~~~~~~plv~  174 (467)
T COG2211         146 --ERASLTSWRMVFASLGGLLVAVLFPPLVK  174 (467)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              48999999999999998877766665554

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.85  E-value=4.6e-08  Score=98.08  Aligned_cols=176  Identities=14%  Similarity=0.100  Sum_probs=141.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH--HHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW--TIAIFTTIY  146 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~--~i~~~~~l~  146 (356)
                      +..+...+...+..++++.....++.|.. .++++..+++.++++..+...++-++.|+++|+. ..++  +..++.++.
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            56777777778888888888888888877 8999999999999999999999999999999997 6333  333444444


Q ss_pred             HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (356)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (356)
                      .+..+.+.+..                            ++..++..-++.|+..|...+..+..+.|..+.++      
T Consensus       376 gl~~~~~p~~~----------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------  421 (509)
T KOG2504|consen  376 GLARLFLPFAT----------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------  421 (509)
T ss_pred             HHHHHHHHHhc----------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------
Confidence            44433333321                            46677777788999999988888889999999887      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHhhc
Q 018406          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT  280 (356)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~~~~  280 (356)
                      ...++++..+...++..++|.+++++.+..| |...|+..+++.+++.++.++..
T Consensus       422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            9999999999999999999999999999887 99999998888877776655543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.85  E-value=1e-07  Score=89.59  Aligned_cols=150  Identities=13%  Similarity=0.101  Sum_probs=105.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-----------------CChHHHHHHHHHHHHHHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--H-----------------KSFADSSNAVNNFLGISQASSVLG  125 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~-----------------~s~~~a~~~~~~~~~~~~~~~~~~  125 (356)
                      ...++..+.+....+.+.+.+||+.-.....++...  +                 .+...--.-+.+..+.-+-|.++.
T Consensus       322 p~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt  401 (528)
T KOG0253|consen  322 PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLIT  401 (528)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHH
Confidence            334455577777888899999987654333332211  1                 111222223344566777889999


Q ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchh
Q 018406          126 GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR  205 (356)
Q Consensus       126 G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~  205 (356)
                      +++.||+ |||+++..+.+++.+.++++..+..     ++                   ....+++.+|+++.    +..
T Consensus       402 ~~iverl-GRKkTMal~l~~f~iflfll~~c~~-----rn-------------------~~tvllf~arafis----g~f  452 (528)
T KOG0253|consen  402 GVIVERL-GRKKTMALSLILFGIFLFLLTTCKT-----RN-------------------AYTVLLFTARAFIS----GAF  452 (528)
T ss_pred             HHHHHHh-cchhHHHHHHHHHHHHHHHHHHhcC-----cc-------------------hhHHHHHHHHHHHh----chh
Confidence            9999996 9999999999999998888876532     11                   12455666665553    345


Q ss_pred             hhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018406          206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (356)
Q Consensus       206 ~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~  249 (356)
                      .+.+.|-.|.+|+..      |+...+.-.-..-+|+++.|+++
T Consensus       453 qvaYvYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  453 QVAYVYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             eEEEEecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH
Confidence            567889999999988      88888887778899999999888

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.82  E-value=3.8e-07  Score=89.35  Aligned_cols=163  Identities=9%  Similarity=-0.041  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      .+...+..++......++.++++.|+.+. .+.+...++...+.+..+..++.+++++++||+ ++|+++.++.++.++.
T Consensus       234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~  312 (410)
T TIGR00885       234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL  312 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence            34445555555555556677888898643 245555566677777788899999999999997 9999988887777766


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      .++..+..                            +.. .....++.|++.+.+.|...+...+.++++.      . .
T Consensus       313 ~ll~~~~~----------------------------~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~-~  356 (410)
T TIGR00885       313 CLGSIFAG----------------------------GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------K-Y  356 (410)
T ss_pred             HHHHHHcC----------------------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------h-h
Confidence            65555431                            112 2455667778888888999999999998654      1 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc------chhHHHHHHHHHHHH
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGALAIAMGI  271 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~------gw~~~f~i~~~~~~i  271 (356)
                      ......+ ..+|+++.|.+.|++.|..      +.+..|.++.++.+.
T Consensus       357 ~s~~l~~-~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~  403 (410)
T TIGR00885       357 GAAGLVM-AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV  403 (410)
T ss_pred             hHHHHHH-HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence            1222222 3499999999999999954      477888887776543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11462 putative transporter; Provisional

Probab=98.78  E-value=1.4e-06  Score=86.63  Aligned_cols=158  Identities=9%  Similarity=0.006  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406           73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (356)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~  152 (356)
                      .++...++..+......+....|.+..+|. ....+.+...+.++..++.+++++++||+ |+|+++..+..+..+..++
T Consensus       232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~  309 (460)
T PRK11462        232 IVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLA  309 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHH
Confidence            333344444444433333334344434443 33344566677788888999999999998 9998877555444333333


Q ss_pred             HHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh-hhhHH
Q 018406          153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH-LDRFF  231 (356)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~-r~~~~  231 (356)
                      +.+..       .                   .+...+++..++.|++.++..+...++++|..+.++-+...| -+..+
T Consensus       310 ~~~~~-------~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~  363 (460)
T PRK11462        310 MFFVP-------M-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISF  363 (460)
T ss_pred             HHHhc-------h-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHH
Confidence            22211       0                   123334444556677777777777888898887433222223 35556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406          232 NFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (356)
Q Consensus       232 ~~~~~~~~iG~~i~p~i~~~i~~~~gw  258 (356)
                      +.+.+...+|.++++.+.+++.+..|+
T Consensus       364 a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        364 AGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            777788899999999888887765554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.76  E-value=9.8e-07  Score=86.65  Aligned_cols=162  Identities=14%  Similarity=0.054  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      ...+.++..++...++....+.++.|.+..+|.+.............+..++.++..+|++++ |+|+++.++.++.+++
T Consensus       237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~  315 (467)
T COG2211         237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVG  315 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHH
Confidence            345555566666666665666667777777888888888888888888888899999999998 9999999999999999


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh-hhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD  228 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~-~~~r~  228 (356)
                      .+++.+..      +                    .+..++++..++.++|.+...+...++++|..+-.+-+. +++-|
T Consensus       316 ~~~~~f~~------~--------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG  369 (467)
T COG2211         316 YLLLYFTP------A--------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG  369 (467)
T ss_pred             HHHHHhhc------C--------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh
Confidence            98888763      1                    257888888899999999999999999999988433222 23456


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW  258 (356)
Q Consensus       229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw  258 (356)
                      ..++.+.+..=+|.+++..+.+++....|+
T Consensus       370 i~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         370 IVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            666777777777888887777777655443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.74  E-value=1.7e-06  Score=83.96  Aligned_cols=178  Identities=8%  Similarity=0.072  Sum_probs=136.1

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 018406           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT  143 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~  143 (356)
                      +-|.+|..++........++.+....+.|++..+.   .++...+...++-.+.-.+.-.+..++-+|+ |.|+.++++.
T Consensus       218 k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag  296 (412)
T PF01306_consen  218 KMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAG  296 (412)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHH
Confidence            34456776666666666677676678888876554   2344567777788888888888899999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406          144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (356)
Q Consensus       144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~  223 (356)
                      +++.+=.++++++.                            +.+.+.+...+.++-.+.......-|+++.||++.   
T Consensus       297 ~i~~iRi~~~~~~~----------------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl---  345 (412)
T PF01306_consen  297 VIMAIRIIGSGFAT----------------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL---  345 (412)
T ss_dssp             HHHHHHHHHHHT------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG---
T ss_pred             HHHHHHHHHHhhhc----------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH---
Confidence            99888777766653                            47778888899999999999999999999999766   


Q ss_pred             hhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 018406          224 KTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG  279 (356)
Q Consensus       224 ~~~r~~~~~~-~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~  279 (356)
                         .++...+ ++++..+|..+.+.++|++.++.|++..|++.+.+.++..++-.+.
T Consensus       346 ---sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~  399 (412)
T PF01306_consen  346 ---SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFT  399 (412)
T ss_dssp             ---HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheee
Confidence               5566665 4678889999999999999999999999988777765554444443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.74  E-value=4.7e-07  Score=87.88  Aligned_cols=73  Identities=10%  Similarity=-0.086  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF  142 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~  142 (356)
                      +..|...+..++-.+++-...++++.+++++.|++.++.+.+.++..+...+..++.|.++||+ |.||-++..
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~   79 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWF   79 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHH
Confidence            4556666666666666656777889999999999999999999999999999999999999998 966544433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.71  E-value=1.8e-07  Score=89.19  Aligned_cols=139  Identities=10%  Similarity=-0.008  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~  150 (356)
                      .+.+.+..++.....+++..+++.|+++.+|++..+++....+..+...++.+++|+++||+ |||+.+..+..+..++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  305 (366)
T TIGR00886       227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA  305 (366)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence            34455555555556667778899999999999999999999999999999999999999998 99988877776666655


Q ss_pred             HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (356)
                      .++.+...     +                   ..+...+++..++.+++.|...+...++.++.+|. +      ++..
T Consensus       306 ~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~  354 (366)
T TIGR00886       306 FLVVLGLV-----S-------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAV  354 (366)
T ss_pred             HHHHhcCC-----C-------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccH
Confidence            55544211     0                   00244444555555566666666677778888873 3      7888


Q ss_pred             HHHHHHHHHHH
Q 018406          231 FNFFYLSVTVG  241 (356)
Q Consensus       231 ~~~~~~~~~iG  241 (356)
                      .++.+...++|
T Consensus       355 ~g~~~~~~~~g  365 (366)
T TIGR00886       355 SGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHhccCC
Confidence            88877666654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.67  E-value=5.8e-06  Score=80.07  Aligned_cols=138  Identities=12%  Similarity=-0.063  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 018406           89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN  168 (356)
Q Consensus        89 ~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  168 (356)
                      ....+.|+++.+|++..+.+........+..++.++.+++.||+ |++...  +.....++.+.+......    .    
T Consensus       227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~----~----  295 (394)
T PRK11652        227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWF----G----  295 (394)
T ss_pred             HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHh----c----
Confidence            34456677777999999988888888888888888899999987 743322  222222222222211100    0    


Q ss_pred             ccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 018406          169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL  248 (356)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i  248 (356)
                                     ..+...++++.++.++|.+...+...++..|.+|. .      ++...++.+...++|+.+++.+
T Consensus       296 ---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~  353 (394)
T PRK11652        296 ---------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALL  353 (394)
T ss_pred             ---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHH
Confidence                           01244566667888888888888888888888873 3      6777888888888999999988


Q ss_pred             HHHHHhhcchh
Q 018406          249 VVYIQMEHGWG  259 (356)
Q Consensus       249 ~~~i~~~~gw~  259 (356)
                      .+++.....+.
T Consensus       354 ~~~~~~~~~~~  364 (394)
T PRK11652        354 SAMLPQTGQFS  364 (394)
T ss_pred             HHHccCCchHH
Confidence            88876554343

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.64  E-value=7e-06  Score=80.19  Aligned_cols=173  Identities=9%  Similarity=0.010  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 018406           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (356)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~  155 (356)
                      +..++.....-...++...|+++.-|.+....+...++..+.-...-.+.+++-.|+ |-++++.++.+.+++=..+.+.
T Consensus       214 l~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l~a~  292 (400)
T PF03825_consen  214 LAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLLYAY  292 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444556777888755447777777777777777778888889999997 9999999999888876666655


Q ss_pred             HhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHH
Q 018406          156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY  235 (356)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~  235 (356)
                      ...     |.                  .........+..+.|+..+........++.+.+|++.      +++..++|.
T Consensus       293 ~~~-----~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~  343 (400)
T PF03825_consen  293 FSD-----PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYS  343 (400)
T ss_pred             hcC-----Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHH
Confidence            421     00                  0011222334456899999999999999999999888      899999887


Q ss_pred             H-HHHHHHHHHHHHHHHHHhhcchhH------HHHHHHHHHHHHHHHHHh
Q 018406          236 L-SVTVGAIVAFTLVVYIQMEHGWGS------AFGALAIAMGISNMLFFI  278 (356)
Q Consensus       236 ~-~~~iG~~i~p~i~~~i~~~~gw~~------~f~i~~~~~~i~~~~~~~  278 (356)
                      . ...+|.++|.+++|++.+.+|-+.      .|.+.+++.++..+++.+
T Consensus       344 ~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  344 ALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI  393 (400)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            6 457899999999999999876432      334444444444444433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.63  E-value=1.8e-06  Score=83.43  Aligned_cols=165  Identities=12%  Similarity=0.025  Sum_probs=109.5

Q ss_pred             cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 018406           62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI  141 (356)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~  141 (356)
                      +.-++||--++...+..+.+.+.+.. .....+|....+| +...+.+...+|...+....+.+-|+.|++ |-|.++++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~-ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~ll  114 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQ-YAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLL  114 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchhee-ehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHH
Confidence            33345555544444444444443322 2335667777788 666777888889999999999999999998 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCh
Q 018406          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (356)
Q Consensus       142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~  221 (356)
                      ++++.++|..+-.++.. |.+.+.                   --....+.|-.+.+...-.+...-+-.-+-+|++++ 
T Consensus       115 gt~ln~iGa~Ir~iss~-p~v~~~-------------------f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q-  173 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSL-PFVPPL-------------------FRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ-  173 (480)
T ss_pred             HHHHHHHHHHHhhhccC-cccccc-------------------chhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch-
Confidence            99999999988777642 222221                   011255566666666655554443444456688777 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018406          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME  255 (356)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~  255 (356)
                           |..+..+--++..+|.+++.++...++.+
T Consensus       174 -----ra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  174 -----RAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             -----hhhhhhHHHhcchHHHHHHhhccceecCC
Confidence                 77777776667677777777666555443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.61  E-value=7.2e-06  Score=74.63  Aligned_cols=151  Identities=12%  Similarity=0.109  Sum_probs=101.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~  146 (356)
                      ||-.+...+.++.+.. ..|.+.. .-..+++.+|++..+...+...-.++..++ ++.|.+.|++ |.+.++.+|.+..
T Consensus         1 rW~~l~a~~~v~~~~G-t~Y~Fs~-yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~   76 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSG-TTYTFSA-YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLG   76 (250)
T ss_pred             ChhhHHHHHHHHHhcC-cccchhh-hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHH
Confidence            3444444444444432 3333333 345678899999999999999999998875 7889999998 9999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (356)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (356)
                      .+|+.++.++..-..                     +....+.+.+..++.+.|.+.............||. +      
T Consensus        77 ~~GY~~~~l~~~~~i---------------------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------  128 (250)
T PF06813_consen   77 FVGYGLLWLAVSGRI---------------------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------  128 (250)
T ss_pred             HHHHHHHHHHHhCcc---------------------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------
Confidence            999999887753110                     011355666656666666555555555556688985 4      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHH
Q 018406          227 LDRFFNFFYLSVTVGAIVAFTLV  249 (356)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~p~i~  249 (356)
                      ||.+.++.--...+++++-..+-
T Consensus       129 RG~vvgilk~~~GLSaai~t~i~  151 (250)
T PF06813_consen  129 RGTVVGILKGFFGLSAAIFTQIY  151 (250)
T ss_pred             cCceehhhhHHHHhHHHHHHHHH
Confidence            77877776555555555443333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.61  E-value=2.5e-06  Score=85.19  Aligned_cols=187  Identities=11%  Similarity=0.095  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH----HHHHHHHHHHHHHHHHHHHH----HHHHhhcchhHHH--
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD----SSNAVNNFLGISQASSVLGG----FLADAYLGRYWTI--  139 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~----a~~~~~~~~~~~~~~~~~~G----~lsD~~~GRr~~i--  139 (356)
                      .++.+++...+-.+.+.-..+.++.|..+..+.+...    .+++.+.-.+...+..++..    ++.+|..+.+...  
T Consensus       273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~  352 (475)
T TIGR00924       273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF  352 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence            3344444444444555455556677766654433211    34444444444444444433    4454421223333  


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 018406          140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (356)
Q Consensus       140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~  219 (356)
                      .+|.++..++.+.+++......                   .....+.+++++..++.++|.....+...++.++..|++
T Consensus       353 ~~G~~l~~~~~~~~~~~~~~~~-------------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~  413 (475)
T TIGR00924       353 TLGMLFCGASFLTFAASIWFAD-------------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR  413 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcC-------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence            6778887777777665421100                   000125788889999999999999999999999999987


Q ss_pred             ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406          220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (356)
Q Consensus       220 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~  281 (356)
                      .      |+..++.++++..+|..+++.+.....+..+|...|...++++++..+++++..|
T Consensus       414 ~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       414 L------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            7      9999999999999999999888887777667877777766666555555544444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.58  E-value=1.5e-05  Score=77.80  Aligned_cols=116  Identities=11%  Similarity=0.044  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406           74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI  153 (356)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~  153 (356)
                      +....++..+.+-....+++.|+++ .|++..+.+.+.++..+...++++++|+++||+..+++.+.+..++..+.....
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~   85 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444455678888865 679999999999999999999999999999998445677766655555443333


Q ss_pred             HHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 018406          154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (356)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~  218 (356)
                      ....                            +.+.+++..++..+......+...++.-+...+
T Consensus        86 ~~~~----------------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~  122 (400)
T PF03825_consen   86 AFSS----------------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD  122 (400)
T ss_pred             HHhc----------------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Confidence            3221                            344555555666666666666665655555543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.54  E-value=1.4e-06  Score=89.35  Aligned_cols=209  Identities=14%  Similarity=0.130  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      +.++.++....+......++....++-+.+.|+++..+.+.+.+.+.++..+..++..+..-|. =|-+.+-++.+++.+
T Consensus        96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL  174 (735)
T ss_pred             chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence            3444444444444333347777788889999999999999999999999999999999999986 666788899999999


Q ss_pred             HHHHHHHHhhccc-c------------CCC----CCCccccccc----cCCCC--Ccchh-hHHHHHHHHHHHHHhhhch
Q 018406          149 GLTGITLCATMKV-F------------MPN----QDNCDRISQL----LGSCE--PAKSW-QMLYLYTVLYITGFGAAGI  204 (356)
Q Consensus       149 g~~~~~~~~~~~~-~------------~~~----~~~~~~~~~~----~~~~~--~~~~~-~~~~~~~~~~l~gig~g~~  204 (356)
                      |.+++++--.+.. .            .+.    .+.|.+.+..    .+.|.  ..++. -+.+++++.++.|+|...+
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            9988875311100 0            000    0001100000    01121  12222 3446778889999999999


Q ss_pred             hhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------------------cc-hhHHHHHH
Q 018406          205 RPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME------------------HG-WGSAFGAL  265 (356)
Q Consensus       205 ~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~------------------~g-w~~~f~i~  265 (356)
                      .+...+|+=|....++      -...+++.+....+|.++|.++++++.+.                  .| ||.+|.+.
T Consensus       255 ~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~  328 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLIC  328 (735)
T ss_pred             ccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHH
Confidence            9999999888777665      78888999999999999999999876431                  34 88899998


Q ss_pred             HHHHHHHHHHHHhhccccc
Q 018406          266 AIAMGISNMLFFIGTPLYR  284 (356)
Q Consensus       266 ~~~~~i~~~~~~~~~~~~~  284 (356)
                      +++.++..+.+++..+..+
T Consensus       329 g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  329 GALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             HHHHHHHHHHHHhCcccCc
Confidence            8888777777666555443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.53  E-value=1.7e-05  Score=77.71  Aligned_cols=168  Identities=12%  Similarity=0.049  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      .++...+..++....++++...+|.|+++.+|++..+.+.......++..++..+.+.+.++. ++++.+.....+..+|
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig  297 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG  297 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence            455555555666666677777788899989999999999888777778788777777765444 3434443334444444


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      .+++.+....   .++                    ....++++.++.++|.+...++.....-  ++...+     +++
T Consensus       298 ~~l~~~~~~~---~~~--------------------~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~  347 (413)
T PRK15403        298 LALLIVGNLL---WPH--------------------VWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGT  347 (413)
T ss_pred             HHHHHHHHHH---ccc--------------------cHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcH
Confidence            4444332100   011                    2333566777888888887777764332  222221     566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM  269 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~  269 (356)
                      ..+.++.....+..+++.+.+++... +-.+.|....++.
T Consensus       348 a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~  386 (413)
T PRK15403        348 VSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVA  386 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHH
Confidence            66777777777778888888887655 4445555544443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.52  E-value=1.3e-08  Score=102.67  Aligned_cols=202  Identities=15%  Similarity=0.100  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 018406           76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL  155 (356)
Q Consensus        76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~  155 (356)
                      +..++. +..+++.....+.+.+.|+++..+++.+.+.+.++..+..++..++.+|. -|-+.+-++.+++.+|.+++++
T Consensus        10 ~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l   87 (539)
T PF03137_consen   10 LLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL   87 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc
Confidence            333444 66667777777788999999999999999999999999999999999985 6667777888889999888775


Q ss_pred             Hhhccc-cCCC------------CCCcccc--c--cc-cCCCC---C-cchhhHHHHHHHHHHHHHhhhchhhhhhhhhh
Q 018406          156 CATMKV-FMPN------------QDNCDRI--S--QL-LGSCE---P-AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGA  213 (356)
Q Consensus       156 ~~~~~~-~~~~------------~~~~~~~--~--~~-~~~~~---~-~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~a  213 (356)
                      -..+.. ....            .+.|...  +  .. .+.|.   . ....-+.+++++.++.|+|.....+...+|+=
T Consensus        88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD  167 (539)
T PF03137_consen   88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID  167 (539)
T ss_dssp             ----------------------------------------------------------------SSS-------------
T ss_pred             cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence            322111 0000            0112000  0  00 00011   1 11223567888899999999999999999999


Q ss_pred             ccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------cc-hhHHHHHHHHHHHH
Q 018406          214 DQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------------------HG-WGSAFGALAIAMGI  271 (356)
Q Consensus       214 d~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~---------------------~g-w~~~f~i~~~~~~i  271 (356)
                      |..++++      -....++++....+|.++|.++++...+.                     .| |+.+|.+.+++.++
T Consensus       168 Dnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l  241 (539)
T PF03137_consen  168 DNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFL  241 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            9988777      67888899999999999999888754321                     34 88888887777666


Q ss_pred             HHHHHHhhcccccc
Q 018406          272 SNMLFFIGTPLYRH  285 (356)
Q Consensus       272 ~~~~~~~~~~~~~~  285 (356)
                      ..+.++...++.+.
T Consensus       242 ~aipl~~FPk~lp~  255 (539)
T PF03137_consen  242 SAIPLFFFPKKLPG  255 (539)
T ss_dssp             --------------
T ss_pred             HHHHHHcCCccCCC
Confidence            65555554444443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.47  E-value=1.9e-05  Score=71.34  Aligned_cols=142  Identities=22%  Similarity=0.272  Sum_probs=103.5

Q ss_pred             HHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccc
Q 018406           96 MFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS  173 (356)
Q Consensus        96 l~~~~~~s~--~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~  173 (356)
                      +...++.+.  ...+...+.+.+...++.++.|.++|++ |||+.++.+...+.++.+...+...               
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------------   91 (338)
T COG0477          28 LLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN---------------   91 (338)
T ss_pred             HHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------------
Confidence            334455554  4778888999999999999999999998 9998888887765555444443310               


Q ss_pred             cccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHH
Q 018406          174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYI  252 (356)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~-~~~iG~~i~p~i~~~i  252 (356)
                                 .....+++.+++.|++.+...+...++++|.++. .    .+++...+.... ...+|..+++.+.+++
T Consensus        92 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (338)
T COG0477          92 -----------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLL  155 (338)
T ss_pred             -----------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       1467788888889999998899999999999997 1    237777777766 5777888888766665


Q ss_pred             Hhh--cchhHHHHHHHHHH
Q 018406          253 QME--HGWGSAFGALAIAM  269 (356)
Q Consensus       253 ~~~--~gw~~~f~i~~~~~  269 (356)
                      ...  .+|++.|.+.....
T Consensus       156 ~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         156 LGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHhcchHHHHHHHHHHH
Confidence            544  56888665554443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.47  E-value=1.5e-05  Score=76.17  Aligned_cols=155  Identities=13%  Similarity=0.076  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL  150 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~  150 (356)
                      .+...+..++-.-+-..+.++++.|+.+..|.+..+++..++.+.++.++|-.++-++..|+ -..+.+.+.+++.++-.
T Consensus       238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~  316 (422)
T COG0738         238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLL  316 (422)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence            44555555555555555678899999988999999999999999999999999999999987 88888877776655444


Q ss_pred             HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406          151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF  230 (356)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~  230 (356)
                      +...+..                            +. .-+.+.+++|+..+.+.|.+.+..-+.++.+.     ..++.
T Consensus       317 ~~~~l~~----------------------------g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~t-----s~~s~  362 (422)
T COG0738         317 LAVALIG----------------------------GV-VALYALFLIGLFNSIMFPTIFSLALKNLGEHT-----SVGSG  362 (422)
T ss_pred             HHHHHhc----------------------------Ch-HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-----cccce
Confidence            4444431                            22 22334567888999999999999999999554     13333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 018406          231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG  263 (356)
Q Consensus       231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~  263 (356)
                      .   -....+|+++-|.+.|++.|..|-...+.
T Consensus       363 ~---l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         363 L---LVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             e---eeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence            3   23467899999999999999998766655

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.40  E-value=3.3e-06  Score=84.30  Aligned_cols=165  Identities=13%  Similarity=0.124  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIY  146 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GRr~~i~~~~~l~  146 (356)
                      .+|...+..++.....|++..+++.|+.+..|++..++.+....+.++..++.++.|+++||.   ..+|..++....++
T Consensus       274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~  353 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY  353 (495)
T ss_pred             hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            478888899999999999999999999986779999999999999999999999999999993   26777666665554


Q ss_pred             H-HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       147 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      . +|.+.+....                            .....+.+.+....+.+...++......+......     
T Consensus       354 ~~~g~~~l~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----  400 (495)
T KOG2533|consen  354 AIIGAISLLAAA----------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----  400 (495)
T ss_pred             HHHHHHHHHhhc----------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----
Confidence            4 3333333321                            12222222233333333344444445555554433     


Q ss_pred             hhhhHHHHHHHHHHHHHHHH-HHHHHHHHhhcchhHHHHHHHH
Q 018406          226 HLDRFFNFFYLSVTVGAIVA-FTLVVYIQMEHGWGSAFGALAI  267 (356)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~-p~i~~~i~~~~gw~~~f~i~~~  267 (356)
                      |+.+..+.+..+.+.+++++ ++..+.....++|.+.|++...
T Consensus       401 k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~  443 (495)
T KOG2533|consen  401 KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA  443 (495)
T ss_pred             HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence            35555555555554444444 4444455556788888854333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.39  E-value=1.6e-05  Score=79.82  Aligned_cols=178  Identities=8%  Similarity=0.062  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-------HHHHHHHHH
Q 018406           79 MAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-------IAIFTTIYL  147 (356)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~~~~~s~----~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~-------i~~~~~l~~  147 (356)
                      .+..+.+......++.|+++..+.+.    .....+.+...+...+..++.|++.||+ |+|+.       +.+|.++..
T Consensus       279 ~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~  357 (489)
T PRK10207        279 VVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCS  357 (489)
T ss_pred             HHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHH
Confidence            33344444454566777764333221    1223444444455666777788999998 98863       667777766


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      ++.+.++.....  +...             +   ...+.++++...++.|+|.+...+...++.....|++.      +
T Consensus       358 ~~~~~~~~~~~~--~~~~-------------~---~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~  413 (489)
T PRK10207        358 LGFLTAAAAGMW--FADA-------------Q---GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------M  413 (489)
T ss_pred             HHHHHHHHHHHh--hcCC-------------C---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------H
Confidence            666544322100  0000             0   01245667777889999999999999999999999877      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHh------h---c-chhHHHHHHHHHHHHHHHHHHhhcc
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQM------E---H-GWGSAFGALAIAMGISNMLFFIGTP  281 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~------~---~-gw~~~f~i~~~~~~i~~~~~~~~~~  281 (356)
                      +..++++++..++|+.++..+..+...      .   . .+.+.|...++..++..++++...+
T Consensus       414 g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~  477 (489)
T PRK10207        414 GFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP  477 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998877765421      0   1 2445666555555444444444333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=9.5e-07  Score=83.98  Aligned_cols=180  Identities=14%  Similarity=0.087  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAG  149 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR-r~~i~~~~~l~~~g  149 (356)
                      ++...+.....++..-..-..++++..+.+.-+.-+.+....-..+.+.++..+.|.++||+ +. ||.+....++.. |
T Consensus       272 I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~-G  349 (464)
T KOG3764|consen  272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATV-G  349 (464)
T ss_pred             HhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHH-H
Confidence            34444444444444444556677777888885555888888888999999999999999998 83 244333333322 2


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      ......        |   .|.               ++..+++-+..++++.+...+......+.+.+.++.++-..+|.
T Consensus       350 ~~~~~i--------P---~~~---------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGs  403 (464)
T KOG3764|consen  350 VSSGPI--------P---FAT---------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGS  403 (464)
T ss_pred             HHhchh--------H---hhh---------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeee
Confidence            211111        0   121               46667777788888888888888888888887655432224899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      .+++...+..+|.++||.+++.+.+..|+.|.-.+.++..++-.-++.+
T Consensus       404 VyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l  452 (464)
T KOG3764|consen  404 VYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL  452 (464)
T ss_pred             HHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988877777665444333333

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.35  E-value=3.8e-05  Score=73.81  Aligned_cols=142  Identities=13%  Similarity=0.017  Sum_probs=98.1

Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----hhHHHH-HHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 018406           96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIA-IFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (356)
Q Consensus        96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G-----Rr~~i~-~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  169 (356)
                      +..|++++....+..+.+..+... ..+..|+.||+. +     ||..++ .+.+++..+..+...+.....  ..    
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--~~----   77 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--ES----   77 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--cc----
Confidence            345788888888888887777666 478889999998 7     665555 455555555555443322111  10    


Q ss_pred             cccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018406          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (356)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~  249 (356)
                            .+....+.........++..+.|+|.+....+..++.+|..|+++      |++..++.+....+|..++..+.
T Consensus        78 ------~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~  145 (403)
T PF03209_consen   78 ------GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF  145 (403)
T ss_pred             ------ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence                  000011111223344455577888888889999999999999887      99999999999999999999999


Q ss_pred             HHHHhhcc
Q 018406          250 VYIQMEHG  257 (356)
Q Consensus       250 ~~i~~~~g  257 (356)
                      +.+.+.++
T Consensus       146 g~lL~~~s  153 (403)
T PF03209_consen  146 GRLLDPFS  153 (403)
T ss_pred             HHHccccC
Confidence            98877665

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.35  E-value=7.5e-05  Score=71.81  Aligned_cols=154  Identities=15%  Similarity=0.107  Sum_probs=122.3

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 018406           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (356)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  170 (356)
                      .+-.|--+.||++..+.+.....+.++..++-.+.|++..+-.|.+++..+++.+..++..++.++...           
T Consensus       230 iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~-----------  298 (403)
T PF03209_consen  230 ILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL-----------  298 (403)
T ss_pred             HcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence            455577788999999999999999999999999999988865588888889999888888777766531           


Q ss_pred             ccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018406          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (356)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~  250 (356)
                                    .+.+.+..+.+++|+|.|.......+..-|+..+..      -|.+++.|..+..+..+++..+++
T Consensus       299 --------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~~GG  358 (403)
T PF03209_consen  299 --------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTFLGG  358 (403)
T ss_pred             --------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence                          247788999999999999988888888888887665      788999999888888888888887


Q ss_pred             HHHhh----------cchhHHHHHHHHHHHHHHHH
Q 018406          251 YIQME----------HGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       251 ~i~~~----------~gw~~~f~i~~~~~~i~~~~  275 (356)
                      .+.|-          .+|...|.+-++.+++++++
T Consensus       359 ~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l  393 (403)
T PF03209_consen  359 ALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL  393 (403)
T ss_pred             HHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence            76542          23556666666655555444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.33  E-value=4.3e-05  Score=76.88  Aligned_cols=174  Identities=14%  Similarity=0.124  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH--hcCCCh------HHHHHHHHHHHHHHHHHHHHH----HHHHHhhcchhHHHHHHHHHH
Q 018406           79 MAERMAYFGLSVNMVTFMFY--VMHKSF------ADSSNAVNNFLGISQASSVLG----GFLADAYLGRYWTIAIFTTIY  146 (356)
Q Consensus        79 ~~~~~~~~~~~~~l~~yl~~--~~~~s~------~~a~~~~~~~~~~~~~~~~~~----G~lsD~~~GRr~~i~~~~~l~  146 (356)
                      ++....+|.+...++.++..  ..+.+.      ...+++.++-.+...++.++.    +++.+|+ +..+.+.++.++.
T Consensus       282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~  360 (500)
T PRK09584        282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLC  360 (500)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHH
Confidence            34455666666666665442  111111      113344444444444444554    4555554 5667788888888


Q ss_pred             HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406          147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH  226 (356)
Q Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~  226 (356)
                      .++.+.+.+......                .|.   ..+.+++++..++.++|.+...+...+++.+..|++.      
T Consensus       361 ~l~f~~l~~~~~~~~----------------~~~---~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------  415 (500)
T PRK09584        361 SGAFLVLPLGAKFAN----------------DAG---IVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------  415 (500)
T ss_pred             HHHHHHHHHHHHhcC----------------CCC---ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------
Confidence            888877766532100                010   1245678888999999999999999999999999887      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHh----------hcchhHHHHHHHHHHHHHHHHHHh
Q 018406          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~----------~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      |++.++.++++..+|+.++..+.++...          ..++.+.|...+++.++..++++.
T Consensus       416 rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        416 MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988887877777666543221          113566776666655444444433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.33  E-value=3.2e-05  Score=76.42  Aligned_cols=155  Identities=15%  Similarity=0.055  Sum_probs=112.0

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cc--hhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 018406           92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (356)
Q Consensus        92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~--~G--Rr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~  167 (356)
                      ...|+++++|+++++......+..+-..+ -++.|.++|.+  +|  ||+-++++.++..++.+.++....   .     
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~---~-----   82 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA---S-----   82 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---c-----
Confidence            44578889999999988777766666655 56678999997  45  455556666666555555444211   0     


Q ss_pred             CccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (356)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~  247 (356)
                                      ..+.....+..++..+|.+......-+...|....+..    .++...++.+....+|+.++..
T Consensus        83 ----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~  142 (433)
T PF03092_consen   83 ----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSL  142 (433)
T ss_pred             ----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHH
Confidence                            01234455566778899999999999999999875542    2677888888899999999999


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406          248 LVVYIQMEHGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       248 i~~~i~~~~gw~~~f~i~~~~~~i~~~~  275 (356)
                      +.|++.+..++++.|.+.+++..+.++.
T Consensus       143 l~G~l~~~~~~~~~f~i~~~~~~l~~~~  170 (433)
T PF03092_consen  143 LSGPLLDSFGPQGVFLISAALPLLMLIV  170 (433)
T ss_pred             hhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence            9999999999998898877665555433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.29  E-value=2e-05  Score=78.16  Aligned_cols=155  Identities=15%  Similarity=0.126  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHhcCCChHH-HHHHHHHH----HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018406           88 LSVNMVTFMFYVMHKSFAD-SSNAVNNF----LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF  162 (356)
Q Consensus        88 ~~~~l~~yl~~~~~~s~~~-a~~~~~~~----~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~  162 (356)
                      ...+...+....++.+... ........    .+...+.+++.|.++|+| |||..+.+..+..++..+.+.+.      
T Consensus        40 ~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~------  112 (463)
T KOG2816|consen   40 VMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ------  112 (463)
T ss_pred             chhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH------
Confidence            3355566665555544332 22233333    566778888999999998 99999999888888777666553      


Q ss_pred             CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHH--hhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHH
Q 018406          163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGF--GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV  240 (356)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gi--g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~i  240 (356)
                                              .+++++   +.++  +.+...+...++++|....+.      |...+++.+.+...
T Consensus       113 ------------------------~~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~  159 (463)
T KOG2816|consen  113 ------------------------GYWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGA  159 (463)
T ss_pred             ------------------------HHHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHH
Confidence                                    222322   3332  234456777888899888776      88888888888888


Q ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccc
Q 018406          241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL  282 (356)
Q Consensus       241 G~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~  282 (356)
                      +..++|.+++++....|....|.+..+..++.++..++..+.
T Consensus       160 ~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E  201 (463)
T KOG2816|consen  160 GLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE  201 (463)
T ss_pred             HHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence            999999999999999999889999888877776655554443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.26  E-value=0.00015  Score=73.80  Aligned_cols=152  Identities=12%  Similarity=0.101  Sum_probs=101.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-HHHHH
Q 018406           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRY-WTIAI  141 (356)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~---~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr-~~i~~  141 (356)
                      +++|.+...++..++..+.+|.+....+......++-+..   ..+.....+.++..++.++.|.+.-++ ||. +.+++
T Consensus       307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~  385 (599)
T PF06609_consen  307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIF  385 (599)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHH
Confidence            3456777777888888888888888888887777776653   456677777888888888899999876 774 55567


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCh
Q 018406          142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (356)
Q Consensus       142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~  221 (356)
                      +.+++.++...++...      ++                    +....++..++.|+|.|+..........-..|+++ 
T Consensus       386 ~~~~~ta~~Gama~~~------~~--------------------n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~-  438 (599)
T PF06609_consen  386 GSVLMTAFCGAMAAVR------PD--------------------NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED-  438 (599)
T ss_pred             HHHHHHHHHHHHHHcc------CC--------------------CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH-
Confidence            7666666555544332      21                    22233455667788877766555444434445444 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018406          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (356)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~iG~~i~p~i~~  250 (356)
                           .+...++......+|+.++..+-.
T Consensus       439 -----ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  439 -----IGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             -----HHHHHHHHHHHHHHhhHHHHHHHH
Confidence                 777777777777777777766543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00788 fbt folate/biopterin transporter

Probab=98.21  E-value=7e-06  Score=81.91  Aligned_cols=136  Identities=10%  Similarity=-0.152  Sum_probs=104.6

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccccccc
Q 018406           97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL  176 (356)
Q Consensus        97 ~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (356)
                      ++.+|+++...+.+.....++..++..+.+.+.+|+ +.|+++.++.++..++.+...+.........   ..       
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~---gi-------  348 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAF---GI-------  348 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccccc---CC-------
Confidence            457899999999999999999999999999999987 9999999999988877755432110000000   00       


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018406          177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH  256 (356)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~  256 (356)
                              .....++...++.+++.+....+...++.+..|++.      .++.++++....++|..+++.+++++.+..
T Consensus       349 --------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~  414 (468)
T TIGR00788       349 --------SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETI  414 (468)
T ss_pred             --------CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                    012233344567788888888888999999999887      899999999999999999999999998887


Q ss_pred             c
Q 018406          257 G  257 (356)
Q Consensus       257 g  257 (356)
                      |
T Consensus       415 g  415 (468)
T TIGR00788       415 G  415 (468)
T ss_pred             C
Confidence            7

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.19  E-value=0.0002  Score=71.40  Aligned_cols=205  Identities=15%  Similarity=-0.002  Sum_probs=135.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChH------H----HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFA------D----SSNAVNNFLGISQASSVLGGFLADAYL  133 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~------~----a~~~~~~~~~~~~~~~~~~G~lsD~~~  133 (356)
                      +.-++.++.++.++++.-++++.+..+...|+.+ .++-++.      +    ..+...++.+...+.+++--++.+++ 
T Consensus       254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~-  332 (477)
T TIGR01301       254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW-  332 (477)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            5557789999999999999999999888888874 4543221      1    12333445555556667777888887 


Q ss_pred             ch-hHHHHHHHHHHHHHHHHHHHHhhccc-cCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhh
Q 018406          134 GR-YWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF  211 (356)
Q Consensus       134 GR-r~~i~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~  211 (356)
                      |+ |++..++.++..++++...+....+. ..+.    +    ..+.--.++.......++...++|+..+.....-.++
T Consensus       333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~----~----~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal  404 (477)
T TIGR01301       333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY----D----GDGESLPPPTGIKASALIVFAILGIPLAITYSIPFAL  404 (477)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc----c----ccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHH
Confidence            95 67778888888888777665432100 0000    0    0000001111223555666678899999988888899


Q ss_pred             hhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHhhccc
Q 018406          212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPL  282 (356)
Q Consensus       212 ~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g--w~~~f~i~~~~~~i~~~~~~~~~~~  282 (356)
                      +++..+++.    ++.|..++++|.+..+...+..+..+.+.+..|  -.+.+.+.++.++++.+..+...|+
T Consensus       405 ~s~~~~~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       405 ASIRSSNLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             HHHHccccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            999888533    237999999999999999988887777666555  3456777777777766665554443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.14  E-value=0.00072  Score=67.59  Aligned_cols=136  Identities=15%  Similarity=0.090  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhh
Q 018406          108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ  186 (356)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~-~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (356)
                      +...++..+...+..|+.|.++|+- |+||.++ +.+++..+..+++.+..      ++                    +
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~------~~--------------------~  125 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS------PG--------------------Q  125 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC------cc--------------------h
Confidence            5667778888888999999999987 7666555 44555555555555542      21                    3


Q ss_pred             HHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh--------------------hhhhhHHHHHHHHHHHHHHHHH
Q 018406          187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK--------------------THLDRFFNFFYLSVTVGAIVAF  246 (356)
Q Consensus       187 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~--------------------~~r~~~~~~~~~~~~iG~~i~p  246 (356)
                      .....+..++..++.+.......+++.|..+++.....                    ..+++..+.-+...++|+.+..
T Consensus       126 ~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l  205 (477)
T PF11700_consen  126 WWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVAL  205 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHH
Confidence            33333333444567777788889999999987762000                    0127777777777888888877


Q ss_pred             HHHHHHHhhc--------chhHHHHHHHHHHH
Q 018406          247 TLVVYIQMEH--------GWGSAFGALAIAMG  270 (356)
Q Consensus       247 ~i~~~i~~~~--------gw~~~f~i~~~~~~  270 (356)
                      ++.-.+....        ..|..+.+.++..+
T Consensus       206 ~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~  237 (477)
T PF11700_consen  206 LISLLLVISPGSTASNTWAIRVAFLIVALWWL  237 (477)
T ss_pred             HHHHHHHHcCCCccccchhhhHHHHHHHHHHH
Confidence            6654443222        23666666666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.06  E-value=0.00023  Score=71.87  Aligned_cols=91  Identities=9%  Similarity=-0.023  Sum_probs=60.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      +..++.....++..++..++.+....+....+.+..|.+... .....+......++.+++.++.||+ |||+.++.+..
T Consensus       290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~  367 (513)
T KOG0254|consen  290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA  367 (513)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence            445666666666666665554433333333334455655433 4444445556666677778999998 99999999999


Q ss_pred             HHHHHHHHHHHHh
Q 018406          145 IYLAGLTGITLCA  157 (356)
Q Consensus       145 l~~~g~~~~~~~~  157 (356)
                      .+.++.++++...
T Consensus       368 ~m~~~~~~~~~~~  380 (513)
T KOG0254|consen  368 GMSICLVILAVVG  380 (513)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888764

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.00  E-value=8.4e-05  Score=54.96  Aligned_cols=67  Identities=18%  Similarity=0.002  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406           78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY  146 (356)
Q Consensus        78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~  146 (356)
                      .++...+.-.+..+++.|+. +.|++..+.+.+.++..+...++++++|+++||+ ||++.++....++
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~   75 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence            33333444446667777876 5899999999999999999999999999999998 9888877665543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.95  E-value=0.00048  Score=71.38  Aligned_cols=82  Identities=9%  Similarity=0.076  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc--hhHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLG--RYWTIAIFTTIY  146 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~-~~~~~~~~~G~lsD~~~G--Rr~~i~~~~~l~  146 (356)
                      .++...+..++....++++..+++.|+++.+|++..+++.+.....+ +..++.+++|+++||+ +  .|+.+.++.++.
T Consensus       331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~  409 (633)
T TIGR00805       331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLS  409 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHH
Confidence            56777888888899999999999999999999999999999887665 6789999999999997 7  456666666666


Q ss_pred             HHHHHH
Q 018406          147 LAGLTG  152 (356)
Q Consensus       147 ~~g~~~  152 (356)
                      +++.++
T Consensus       410 ~~~~~~  415 (633)
T TIGR00805       410 TLSYLL  415 (633)
T ss_pred             HHHHHH
Confidence            665544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.88  E-value=0.00011  Score=72.75  Aligned_cols=148  Identities=9%  Similarity=-0.055  Sum_probs=113.3

Q ss_pred             HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccC
Q 018406           98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG  177 (356)
Q Consensus        98 ~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (356)
                      ++++-.+..-+.....-..+-.+.-++.++|..++ |+-+++.+++.++.+=.+......                    
T Consensus       399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L~--------------------  457 (618)
T KOG3762|consen  399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYLQ--------------------  457 (618)
T ss_pred             hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHhc--------------------
Confidence            45554455555555556677777788889999998 999999999888887666665542                    


Q ss_pred             CCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Q 018406          178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEH  256 (356)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~-~~~iG~~i~p~i~~~i~~~~  256 (356)
                              +.|+.+..-++.|+..+.++.++.+|+++..|++-      +.++.++.+. .-.+|-.+|.+|+|.+...+
T Consensus       458 --------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f  523 (618)
T KOG3762|consen  458 --------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVERF  523 (618)
T ss_pred             --------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence                    56777777799999999999999999999999887      6666666553 23566777888888888888


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhc
Q 018406          257 GWGSAFGALAIAMGISNMLFFIGT  280 (356)
Q Consensus       257 gw~~~f~i~~~~~~i~~~~~~~~~  280 (356)
                      |-+..|++.++..++.++++....
T Consensus       524 g~~ttf~~~giAcl~~l~~~~~iq  547 (618)
T KOG3762|consen  524 GARTTFRIFGIACLVTLALFISIQ  547 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888888887777666655443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.88  E-value=4.4e-08  Score=96.57  Aligned_cols=178  Identities=15%  Similarity=0.054  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      +.....+....+..+..+....+...++.+..+.+..  ........+...++.+++.++.||+ |||+.++++.++..+
T Consensus       252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~  328 (451)
T PF00083_consen  252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAI  328 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc
Confidence            3444445444444444433334444445556666665  2222233455556777778999997 999999999888777


Q ss_pred             HHHHHH-HHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhh-chhhhhhhhhhccCCCCChhhhhh
Q 018406          149 GLTGIT-LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA-GIRPCVSSFGADQFDERSKDYKTH  226 (356)
Q Consensus       149 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g-~~~~~~~~~~ad~f~~~~~~~~~~  226 (356)
                      ..+.+. ....    .++               .++..+.. .++...+..++.+ +..+....+.+|.||++.      
T Consensus       329 ~~~~~~~~~~~----~~~---------------~~~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------  382 (451)
T PF00083_consen  329 CSLILGIIFFL----GVS---------------SSSWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------  382 (451)
T ss_pred             ccccccccccc----ccc---------------cccccccc-cceeeeeccccccccccccccccccccccccc------
Confidence            666554 1100    000               00000111 1111222212222 334555578899999988      


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406          227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~  275 (356)
                      |++..++.+....+++++++.+..++.+..+-...|.+.+++.++..++
T Consensus       383 R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~  431 (451)
T PF00083_consen  383 RSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF  431 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccchhhHHHHHHHHhh
Confidence            8898988888888888888888777777666234455555544444443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.88  E-value=1.8e-05  Score=76.72  Aligned_cols=177  Identities=15%  Similarity=0.038  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH--------HHHHHHHHHHH-HHHHHHHHHHhhcchhHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN--------AVNNFLGISQA-SSVLGGFLADAYLGRYWTI  139 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~--------~~~~~~~~~~~-~~~~~G~lsD~~~GRr~~i  139 (356)
                      +.++-..+..|..-+++|+...+.-.-+ +.+|+.+.+...        ...+...+..+ +..++.++.|++ ||++..
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence            5556666667777778887655544333 445554433222        12222222222 556677889997 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHH-HHHHHhhhchhhhhhhhhhccCCC
Q 018406          140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDE  218 (356)
Q Consensus       140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~gig~g~~~~~~~~~~ad~f~~  218 (356)
                      +.+.+++.+..+.++...+.                     .   .+...+++.. +..-++.-+..+......+|.||+
T Consensus       382 ~~GF~~~~i~~~~~~~~y~~---------------------~---~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa  437 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGPYNQ---------------------L---ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA  437 (538)
T ss_pred             HhhHHHHHHHHHHHcCCccc---------------------c---cccCceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence            99999988877666653210                     0   0111122222 223345555666777778999999


Q ss_pred             CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hcchhHHHHHHHHHHHHHHHHHH
Q 018406          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~-----~~gw~~~f~i~~~~~~i~~~~~~  277 (356)
                      +.      |+...++...+.-+|+.++.....++.+     ..|.++.|++.++++.++.++.+
T Consensus       438 rv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~  495 (538)
T KOG0252|consen  438 RV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL  495 (538)
T ss_pred             HH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE
Confidence            98      9999999999999999999999999998     67889999999888877665543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.86  E-value=1.4e-06  Score=79.45  Aligned_cols=155  Identities=14%  Similarity=0.183  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG  149 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g  149 (356)
                      +.++.++..+...+.+ ---..+.+++..+.+.+.++..++-++|..-..+.++++|++.||.+|-|+.-++-+.+..+|
T Consensus        45 ~lv~mc~lgfgsyfcy-d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G  123 (459)
T KOG4686|consen   45 ALVFMCLLGFGSYFCY-DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG  123 (459)
T ss_pred             HHHHHHHhcccceeec-CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence            3444444444443332 223346667777777777788888889999999999999999999999887666666666667


Q ss_pred             HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406          150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR  229 (356)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~  229 (356)
                      .+..+.-.-                         ....+++.++|++.|+|.-........+..-+|..++      ..-
T Consensus       124 qliFa~Ggi-------------------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~  172 (459)
T KOG4686|consen  124 QLIFAAGGI-------------------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNF  172 (459)
T ss_pred             HHHHHhchH-------------------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccc
Confidence            766654211                         1257899999999999987777888899999999887      899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018406          230 FFNFFYLSVTVGAIVAFTLVVYIQMEH  256 (356)
Q Consensus       230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~  256 (356)
                      ++++.....-+|+.+...+.+++.+..
T Consensus       173 vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  173 VFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             hhhHHHHHHHhhceeeeeecHHHHHHH
Confidence            999988888888887777777776654

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.83  E-value=0.0012  Score=55.73  Aligned_cols=107  Identities=16%  Similarity=0.249  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhh
Q 018406          107 SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ  186 (356)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (356)
                      .....++..+...+..++.+.+.+++ |.|++++++.+.+.+-......        +                     +
T Consensus        39 G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~--------~---------------------~   88 (156)
T PF05978_consen   39 GYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY--------P---------------------N   88 (156)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh--------h---------------------h
Confidence            34455556666777778888888887 9999999999998865544322        1                     3


Q ss_pred             HHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018406          187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (356)
Q Consensus       187 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~  249 (356)
                      ...++.+-++.|+|.+..+.....++.+...++.      +++..+++......+..+|.++.
T Consensus        89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen   89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence            6778888899999999999999999998776554      55555555444445555554433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PTZ00207 hypothetical protein; Provisional

Probab=97.74  E-value=0.00094  Score=68.24  Aligned_cols=171  Identities=12%  Similarity=0.033  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcchhH---------
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HKSFAD--SSNAVNNFLGISQASSVLGGFLADAYLGRYW---------  137 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-~~s~~~--a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~---------  137 (356)
                      .+|+++...+|..-+...+..|+- ++-+.+ |.+...  ..+.++++.++.++|-+.+|+++... -||+         
T Consensus       354 d~Wll~~~~~cg~g~gl~~~~N~~-qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~-~~~~~~~r~prt~  431 (591)
T PTZ00207        354 RLWCLLWSIFCCVGAHFVIIFNAR-FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS-QKRRAEDRVPITI  431 (591)
T ss_pred             hHHHHHHHHHHhhCchheeeecHH-HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH-HhhccccccchhH
Confidence            578888888887666655555553 445567 663333  33378999999999999999998332 3333         


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 018406          138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD  217 (356)
Q Consensus       138 ~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~  217 (356)
                      .+.+..+ +.++.+++++..      |                      ...++++-++.|++.|...+...+...|+|.
T Consensus       432 ~l~~~~~-~~~~~lll~~~~------p----------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg  482 (591)
T PTZ00207        432 ALFIPSV-CIITMLTLFLTL------P----------------------KAALPLPYFIAAFANGFMAATIALVTRTIFA  482 (591)
T ss_pred             HHHHHHH-HHHHHHHHHHHC------C----------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc
Confidence            2223333 555555555542      1                      1468999999999999999999999999999


Q ss_pred             CCChhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhh----------cc---hhHHHHHHHHHHHHHHHHHHh
Q 018406          218 ERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQME----------HG---WGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       218 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~-p~i~~~i~~~----------~g---w~~~f~i~~~~~~i~~~~~~~  278 (356)
                       ++      .+..+|...++.-+|+.+- -.+.|++.|.          .|   ++..|.+.+++.+++++.-..
T Consensus       483 -k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        483 -KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             -cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence             66      7899998888888888765 4455666432          12   677888877776666555433

>PRK03612 spermidine synthase; Provisional

Probab=97.64  E-value=0.015  Score=58.82  Aligned_cols=149  Identities=12%  Similarity=0.079  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHH-HHHHHHHHHh
Q 018406           80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL-AGLTGITLCA  157 (356)
Q Consensus        80 ~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~-i~~~~~l~~-~g~~~~~~~~  157 (356)
                      +..++..+.-....-.+...+|.+....+.+++++.++..+|+.++++++++. -|+.. +.+...+.. +...++....
T Consensus        25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~~~~  103 (521)
T PRK03612         25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILYAAF  103 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444556667888999999999999999999999999887554 23222 111111111 1111111111


Q ss_pred             hccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHH
Q 018406          158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS  237 (356)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~  237 (356)
                      ..   ..                    .....++...++.++..|+..|.+..+..+... ++      .+...+-.|..
T Consensus       104 ~~---~~--------------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~  153 (521)
T PRK03612        104 AF---QG--------------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAA  153 (521)
T ss_pred             HH---HH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhH
Confidence            00   00                    011122233345566666665555554433222 11      34455666667


Q ss_pred             HHHHHHHHHHHHHHHH-hhcchh
Q 018406          238 VTVGAIVAFTLVVYIQ-MEHGWG  259 (356)
Q Consensus       238 ~~iG~~i~p~i~~~i~-~~~gw~  259 (356)
                      ..+|+++|.++.+++. ...|-.
T Consensus       154 ntlGa~~G~l~~~~vLlp~lG~~  176 (521)
T PRK03612        154 DYLGALVGGLAFPFLLLPRLGLI  176 (521)
T ss_pred             HhHHHHHHHHHHHHHHHHhcchH
Confidence            7888888888887654 356643

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.62  E-value=7.8e-05  Score=72.34  Aligned_cols=166  Identities=13%  Similarity=0.113  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHHHHH-HH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIF-TT  144 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GRr~~i~~~-~~  144 (356)
                      +.++.+..+.+...+++..=.++++.|++ .+|.+.+-.+.+-.+.-+...+.+++.|..|||.   +||||.++.. .+
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            56666666666666776555566777775 6888888877777777888888899999999987   7988766544 45


Q ss_pred             HHHHHHHHHHHHhhccccC-CCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406          145 IYLAGLTGITLCATMKVFM-PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY  223 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~  223 (356)
                      ...++.+++..+..+..+. ++.            -.+.+......++++..+.=+..-..+++.-++++|+...++++ 
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd~~------------~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~-  177 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGDNE------------RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKK-  177 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcCCc------------ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhh-
Confidence            5556666555543221110 110            01133356778888888888888888999999999999876632 


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018406          224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYI  252 (356)
Q Consensus       224 ~~~r~~~~~~~~~~~~iG~~i~p~i~~~i  252 (356)
                          .++.+++.+...+|+.+|...++|.
T Consensus       178 ----~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  178 ----TRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             ----hccchhHHHHHHhcceeeeeccccc
Confidence                2267777778888888887766643

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.60  E-value=0.0025  Score=61.67  Aligned_cols=128  Identities=14%  Similarity=0.037  Sum_probs=89.0

Q ss_pred             HHHHHHHHHhcCC---Ch----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHHHHhhccc
Q 018406           90 VNMVTFMFYVMHK---SF----ADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAGLTGITLCATMKV  161 (356)
Q Consensus        90 ~~l~~yl~~~~~~---s~----~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~-~i~~~~~l~~~g~~~~~~~~~~~~  161 (356)
                      ..++.|+++..+.   +.    +-.+...++..+..++..|+-|-++|.. |+|| .+.+...+.++.+..+++...   
T Consensus        36 ~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~---  111 (438)
T COG2270          36 FIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP---  111 (438)
T ss_pred             ehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC---
Confidence            4578888877654   33    3346667778888888899999999998 8665 444555566666666665421   


Q ss_pred             cCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHH
Q 018406          162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG  241 (356)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG  241 (356)
                                            +..+....+...+..++..+......+++.+..++++      .++..+.-+-...+|
T Consensus       112 ----------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylg  163 (438)
T COG2270         112 ----------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLG  163 (438)
T ss_pred             ----------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCccccccccccccc
Confidence                                  1134555555677788888888999999999998776      566666655567777


Q ss_pred             HHHHHHHH
Q 018406          242 AIVAFTLV  249 (356)
Q Consensus       242 ~~i~p~i~  249 (356)
                      +.+..++.
T Consensus       164 s~i~li~~  171 (438)
T COG2270         164 SVILLIFV  171 (438)
T ss_pred             chHHHHHH
Confidence            77766554

>TIGR01272 gluP glucose/galactose transporter

Probab=97.59  E-value=0.00051  Score=64.73  Aligned_cols=84  Identities=10%  Similarity=0.044  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Q 018406          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------  255 (356)
Q Consensus       186 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~----------  255 (356)
                      ++..++++.++.|.|.+...+...+++++..++++      +.+..++.+....+|+.++|++++.+...          
T Consensus         9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~   82 (310)
T TIGR01272         9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA   82 (310)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence            68889999999999999999999999999998776      78888999999999999999999977632          


Q ss_pred             ------cchhHHHHHHHHHHHHHHHH
Q 018406          256 ------HGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       256 ------~gw~~~f~i~~~~~~i~~~~  275 (356)
                            ..|+++|.+.+++.++..++
T Consensus        83 ~~~~~~~~~~~~yl~ia~~~~~~~i~  108 (310)
T TIGR01272        83 TANAEAAKVHTPYLLLAGALAVLAII  108 (310)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  35888888665554444433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.49  E-value=0.013  Score=58.98  Aligned_cols=146  Identities=12%  Similarity=0.094  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      +..+.+....+...+.+|++.-+     ...+|.+......+...   .....-...+.+-|++ |||.....+.++..+
T Consensus       322 ~~~~~~~~~~~~~~~~y~gl~~~-----~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~  392 (521)
T KOG0255|consen  322 YRTLYLLFIWFVFSLVYYGLSLN-----VSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGI  392 (521)
T ss_pred             HHHHHHHHHHHHHhHHHHhhhhh-----hhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            34444444444444555444332     33455544433333322   4444445557899997 999999999999998


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      +.+...+...     .                    .......+...+..++.+........+.+|++|+..      |.
T Consensus       393 ~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~  441 (521)
T KOG0255|consen  393 GLLLFGWLPD-----D--------------------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RN  441 (521)
T ss_pred             HHHHHHHhhc-----c--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HH
Confidence            8888877532     0                    010122222233333444445556888899999887      88


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406          229 RFFNFFYLSVTVGAIVAFTLVVYIQM  254 (356)
Q Consensus       229 ~~~~~~~~~~~iG~~i~p~i~~~i~~  254 (356)
                      ...+.......+|++++|.+......
T Consensus       442 ~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  442 TAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            88888888899999999976654433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.46  E-value=0.0017  Score=61.90  Aligned_cols=153  Identities=14%  Similarity=0.096  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HHHH
Q 018406           68 WIAALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTI  145 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~-~~~l  145 (356)
                      ...++.+++...+.....|....+...++ ...+|+++.+.+-+.+.-.++..+....-.+..|++.|.-+..+. +..+
T Consensus       259 ~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~  338 (451)
T KOG2615|consen  259 FISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLL  338 (451)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHH
Confidence            45778888888777777777666666666 467999999999888888888888888888888988555443333 3333


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      .+-..+++....                            ....++++..+..+..+...+++..++....|...     
T Consensus       339 ~vP~~llls~~~----------------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q-----  385 (451)
T KOG2615|consen  339 IVPAFLLLSLAR----------------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ-----  385 (451)
T ss_pred             HHHHHHHHhccc----------------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc-----
Confidence            333333333321                            35678888888899888889999999999888877     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (356)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~  254 (356)
                       ||...+++.....++=++||++.|++..
T Consensus       386 -rG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  386 -RGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             -chHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence             9999999999999999999999887754

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.43  E-value=0.0011  Score=64.44  Aligned_cols=184  Identities=13%  Similarity=0.086  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-HHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY-WTIAIFTTIYLA  148 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr-~~i~~~~~l~~~  148 (356)
                      ...+++....+....+|++.+.+-.- ...-|++...++.+..+..+++.++.++.|.+.||. ..+ .++++......+
T Consensus       267 ~F~il~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v  344 (480)
T KOG2563|consen  267 QFIILAICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALV  344 (480)
T ss_pred             cHHHHHHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHH
Confidence            44555555566666666665544322 234577778899999999999999999999999998 554 455555555555


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhcc-CCCCChhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ-FDERSKDYKTHL  227 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~-f~~~~~~~~~~r  227 (356)
                      +...+.....    .    .|                ..+.++....+.|++..+..|.-..+..|. ||..+       
T Consensus       345 ~~~~l~~~t~----~----~~----------------~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------  393 (480)
T KOG2563|consen  345 GTLMLLTCTL----F----LG----------------DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------  393 (480)
T ss_pred             HHHHHHHhhc----c----CC----------------ceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------
Confidence            5322222111    0    11                234455555677777777777777777776 55444       


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc---hhH-HHHHHHHHHHHHHHHHHhhccccccc
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGS-AFGALAIAMGISNMLFFIGTPLYRHR  286 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g---w~~-~f~i~~~~~~i~~~~~~~~~~~~~~~  286 (356)
                      +.-.+..++...+-+.+-.++.+...+..+   |.+ .-+.......+.+++..+.++.|++.
T Consensus       394 ~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~  456 (480)
T KOG2563|consen  394 GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL  456 (480)
T ss_pred             cccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence            333344444455555555556666666555   333 32333344444555555555555443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.37  E-value=0.048  Score=54.39  Aligned_cols=170  Identities=9%  Similarity=-0.003  Sum_probs=96.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcchhHHHH
Q 018406           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-----FADSSNAVNNFLGISQAS-SVLGGFLADAYLGRYWTIA  140 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-----~~~a~~~~~~~~~~~~~~-~~~~G~lsD~~~GRr~~i~  140 (356)
                      -++.++...+.-+|..+.++.+-.     +.+.+..+     ......+.+...+...+. .++-+++++|+ +|++.+.
T Consensus         5 E~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~   78 (472)
T TIGR00769         5 ELKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFY   78 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHH
Confidence            355666666766776666653332     34445442     234455555544444444 77889999998 9999888


Q ss_pred             HHHHHHHHHHHHHHHHhhc-c-ccCCCCCCccccccccCCCCCcchh-------hHHHHHHHHHHHHHhhhchhh-hhhh
Q 018406          141 IFTTIYLAGLTGITLCATM-K-VFMPNQDNCDRISQLLGSCEPAKSW-------QMLYLYTVLYITGFGAAGIRP-CVSS  210 (356)
Q Consensus       141 ~~~~l~~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~gig~g~~~~-~~~~  210 (356)
                      +....+++...++++.... + .++|+ ..|++     .....+.+.       +.+...+..+...+-.....+ ...+
T Consensus        79 ~~~~~F~~~f~lF~~vl~p~~~~~~p~-~~~~~-----~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~  152 (472)
T TIGR00769        79 TVISPFLGFFALFAFVIYPLSDLLHPT-ALADK-----LLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWG  152 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhcCCc-HHHHH-----HHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777666666555544210 0 01111 00000     000000000       011111111122222233333 6788


Q ss_pred             hhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406          211 FGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (356)
Q Consensus       211 ~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~  254 (356)
                      +..|.+..++      -.+++..+..+.++|..+++.+..++.+
T Consensus       153 fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       153 FANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999877      7899999999999999999998888763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.34  E-value=0.026  Score=56.69  Aligned_cols=120  Identities=13%  Similarity=-0.025  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchh-H-----H-HHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCC
Q 018406          107 SSNAVNNFLGISQASSVLGGFLADAYLGRY-W-----T-IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC  179 (356)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr-~-----~-i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (356)
                      +++..++-.+...+..|+.+++=.+. +|| +     . +.++.++..++.+.+.+......  +               
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~--~---------------  371 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSA--M---------------  371 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC--C---------------
Confidence            45555665555555666666665554 332 1     1 55677777777766665442110  0               


Q ss_pred             CCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHH
Q 018406          180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV-TVGAIVAFTLVVYI  252 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~-~iG~~i~p~i~~~i  252 (356)
                        ....+..++++..++.++|.-+..|...+++++..|++.      ++..++.+++.. .+|..++..+.++.
T Consensus       372 --~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~------~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        372 --YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV------TGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             --CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              001356778888889999999999999999999999887      899999887643 56666665555544

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.22  E-value=0.034  Score=54.18  Aligned_cols=153  Identities=8%  Similarity=0.007  Sum_probs=97.9

Q ss_pred             HHHHHHHHHh-cCCChHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 018406           90 VNMVTFMFYV-MHKSFADSS-NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD  167 (356)
Q Consensus        90 ~~l~~yl~~~-~~~s~~~a~-~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~  167 (356)
                      .++..|+.+. .|++..+.. .+.-++.-......++...++|.. |-|++++++.+..++...++.+..          
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~----------   92 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT----------   92 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence            4578899887 899988765 455556666666777788999986 999999999888877776666542          


Q ss_pred             CccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406          168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (356)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~  247 (356)
                                        +...+-+.-++.|++.+. .....+++=-..|+++      .-++.+.-..+..+|..++.+
T Consensus        93 ------------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~  147 (412)
T PF01770_consen   93 ------------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSL  147 (412)
T ss_pred             ------------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence                              466677777777777555 3444454444444333      555555544455555555554


Q ss_pred             HHHHHHh--hcchhHHHHHHHHHHHHHHHHHHh
Q 018406          248 LVVYIQM--EHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       248 i~~~i~~--~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      ++-.+..  ..++.....+..+...+++++.++
T Consensus       148 lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f  180 (412)
T PF01770_consen  148 LGQLLVSFGGVSYFQLNYISLASVSLALLIALF  180 (412)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4443333  334566666766666666555444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.98  E-value=0.0083  Score=59.68  Aligned_cols=152  Identities=11%  Similarity=0.045  Sum_probs=113.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406           67 GWIAALFIFGNEMAERMAYFG-LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l  145 (356)
                      ..|..+.+....+.....-.+ ....+..|+...++++..+.+...+.......++.++..++--+.+|-++++.+|.+.
T Consensus       238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~  317 (463)
T KOG2816|consen  238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLS  317 (463)
T ss_pred             CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHH
Confidence            334445544444443333322 2214456788899999999999999999999999988885444445999999999999


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      ..+...+.+++.                            +.++++.+.++.++. +...+...++.+-+...++     
T Consensus       318 ~~~~~~~~af~~----------------------------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e-----  363 (463)
T KOG2816|consen  318 EFLQLLLFAFAT----------------------------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE-----  363 (463)
T ss_pred             HHHHHHHHHHhc----------------------------cchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc-----
Confidence            999998888864                            467777777666554 6667888888888888887     


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018406          226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQ  253 (356)
Q Consensus       226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~  253 (356)
                       +|..+++......+.+.++|.+-+.+.
T Consensus       364 -~g~v~~~is~i~~l~~~~~~~~~~~i~  390 (463)
T KOG2816|consen  364 -QGKVFGIISGIEGLSGVVSPALYGNIF  390 (463)
T ss_pred             -ccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence             899999999888888888888776554

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.93  E-value=0.0019  Score=58.97  Aligned_cols=97  Identities=18%  Similarity=0.078  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 018406           90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC  169 (356)
Q Consensus        90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  169 (356)
                      .....|+.+.+|+...+.+....+..+...+...+.|-|+|+- |||+...    .+.+.+++..+.-+           
T Consensus        57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracv----tycitYiLsCiTKh-----------  120 (454)
T KOG4332|consen   57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACV----TYCITYILSCITKH-----------  120 (454)
T ss_pred             CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-cccccee----eehHHHHHHHHhhc-----------
Confidence            3445577788999999999888888888888888889999997 9999654    44455555555432           


Q ss_pred             cccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhh-hhhccC
Q 018406          170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS-FGADQF  216 (356)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~-~~ad~f  216 (356)
                                    +.++-.+.++|++-|+..+...+..-+ +++|.-
T Consensus       121 --------------SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  121 --------------SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             --------------CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence                          124667889999999998887666544 345544

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.66  E-value=0.031  Score=41.93  Aligned_cols=65  Identities=8%  Similarity=-0.073  Sum_probs=57.3

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 018406           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC  156 (356)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~  156 (356)
                      .+...++++.+++..+++++.+.-.+++.+|.+...++.++. .+++.+..+.++..+..+.+++.
T Consensus        13 plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   13 PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            355567889999999999999999999999999999999986 88888999988888888877765

Note that many members are hypothetical proteins.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.58  E-value=0.00055  Score=69.46  Aligned_cols=182  Identities=10%  Similarity=0.078  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAY-LGRYWTIAIFTTIY  146 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~-~~~~~~~~~~~G~lsD~~-~GRr~~i~~~~~l~  146 (356)
                      +...++.+...++.+...++.++++-|++++|+.++..++.+.... ..+..+|.+++|++..|+ ++.|..+....++.
T Consensus       305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~  384 (539)
T PF03137_consen  305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS  384 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence            3466777777888888889999999999999999999999888765 447788999999999998 44555555555444


Q ss_pred             HHHHHHHHHH-----hhccc--cCCC-------------CCCcccc------ccccCCCCCcchhhHHHHHHHHHHHHHh
Q 018406          147 LAGLTGITLC-----ATMKV--FMPN-------------QDNCDRI------SQLLGSCEPAKSWQMLYLYTVLYITGFG  200 (356)
Q Consensus       147 ~~g~~~~~~~-----~~~~~--~~~~-------------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~gig  200 (356)
                      ++..+.....     .+.+.  +...             ...|+..      .+....|+..-..+...+++..++..+.
T Consensus       385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~  464 (539)
T PF03137_consen  385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF  464 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence            4433331110     00000  0000             0012110      0011224444122345555555554444


Q ss_pred             hhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Q 018406          201 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEH  256 (356)
Q Consensus       201 ~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~-~~~iG~~i~p~i~~~i~~~~  256 (356)
                      .+....+.....--..++++      |+-+.++..+ ...+|..-+|++.|++.|..
T Consensus       465 ~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  465 TFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ---------------------------------------------------------
T ss_pred             HHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            44444444444446667666      7777777654 45678888999999988864

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.36  E-value=0.072  Score=55.41  Aligned_cols=81  Identities=11%  Similarity=0.105  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNN-FLGISQASSVLGGFLADAY-LGRYWTIAIFTTIYL  147 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~-~~~~~~~~~~~~G~lsD~~-~GRr~~i~~~~~l~~  147 (356)
                      .....++...++.+.+.|+.++++-|+.++||.+...+..++.. ...+..+|.+++|++..|+ +.-|.+..+..+..+
T Consensus       393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~  472 (735)
T KOG3626|consen  393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV  472 (735)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence            46778888999999999999999999999999999999988855 5667778999999999998 445555555444444


Q ss_pred             HHH
Q 018406          148 AGL  150 (356)
Q Consensus       148 ~g~  150 (356)
                      +.+
T Consensus       473 l~l  475 (735)
T KOG3626|consen  473 LSL  475 (735)
T ss_pred             HHH
Confidence            433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.28  E-value=0.31  Score=48.12  Aligned_cols=151  Identities=8%  Similarity=-0.124  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~  151 (356)
                      +...+...+-.++.-++...++.|+... |++....+..=+...+....+.++..++.+|+ |-.++=+++.....+.+.
T Consensus       261 flas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~  338 (432)
T PF06963_consen  261 FLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLA  338 (432)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHH
Confidence            3333333334444445566688899876 99999999999999999999999999999998 998888888777666555


Q ss_pred             HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (356)
                      +...+...+...                  .+..+...++.+.++.=+|.=+..-+..-++-|..|+++      |+.+.
T Consensus       339 ~~v~~~~~~~~~------------------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~  394 (432)
T PF06963_consen  339 LCVVSFWAPGSP------------------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVS  394 (432)
T ss_pred             HHHHHHhcCCCC------------------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHH
Confidence            555443221100                  012345666666677667777777788888888888776      88888


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 018406          232 NFFYLSVTVGAIVAFTL  248 (356)
Q Consensus       232 ~~~~~~~~iG~~i~p~i  248 (356)
                      +.-+-..++...+...+
T Consensus       395 gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  395 GVQNSLQSLFELLSFVL  411 (432)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            88777777766666544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.52  Score=46.77  Aligned_cols=117  Identities=20%  Similarity=0.099  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHH
Q 018406          113 NFLGISQASSVLGGFLADAY--LGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL  190 (356)
Q Consensus       113 ~~~~~~~~~~~~~G~lsD~~--~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (356)
                      ....+..++.++.+.+++|.  +||++++.++.++..++.++.-+..  |...|.    .    .+..-+...+......
T Consensus       287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~dap~----~----~t~~~~~~~~~~~~~~  356 (461)
T KOG3098|consen  287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PNDAPL----R----PTDSPPLLFTPSYYLA  356 (461)
T ss_pred             HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cccCCC----C----CCcccccccccchhHH
Confidence            34455555667777887665  6999999999999888877766543  211110    0    0001111112233344


Q ss_pred             HHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 018406          191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF  246 (356)
Q Consensus       191 ~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p  246 (356)
                      .+.-++.|++-+........++++.+|++       +..+++++-+-..+++.++.
T Consensus       357 ~ii~~l~G~~D~~~~t~~~~ii~~~~~~~-------~~~~fsi~kfyq~~~s~v~~  405 (461)
T KOG3098|consen  357 LIIGFLLGFGDACFNTQRYVIIALLYPDD-------RAQAFSLFKFYQSVASCVAF  405 (461)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHHHHh
Confidence            44456789999999999999999999544       45555555554445554433

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.12  E-value=0.091  Score=52.05  Aligned_cols=80  Identities=20%  Similarity=0.259  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHH
Q 018406          111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL  190 (356)
Q Consensus       111 ~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (356)
                      ..+......+.+++++.+-|.. |.|+.+.++...+....+.....                             |...+
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~-----------------------------N~y~~  105 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP-----------------------------NSYYL  105 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc-----------------------------chHHH
Confidence            6667777888899999999997 99999999999988776655542                             46778


Q ss_pred             HHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 018406          191 YTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (356)
Q Consensus       191 ~~~~~l~gig~g~~~~~~~~~~ad~f~~~~  220 (356)
                      +.+-.++|+|.+..+.-...++.+....+.
T Consensus       106 yfssallG~Gaallw~GqG~ylt~~st~~t  135 (461)
T KOG3098|consen  106 YFSSALLGFGAALLWTGQGGYLTSNSTRET  135 (461)
T ss_pred             HHHHHHhhhhHHheecccceehhhcCChhh
Confidence            889999999999989888899999888665

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.09  E-value=0.22  Score=49.42  Aligned_cols=89  Identities=15%  Similarity=0.196  Sum_probs=64.1

Q ss_pred             hhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHhhcch
Q 018406          185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY------IQMEHGW  258 (356)
Q Consensus       185 ~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~------i~~~~gw  258 (356)
                      .+.++++.+.+++++|.=++.+...++.+...|++-      .+..++.|.++...|..++-.+.+.      ..+....
T Consensus       392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~  465 (498)
T COG3104         392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIE  465 (498)
T ss_pred             cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhh
Confidence            368888999999999999999999999999999766      7888888888888887777665552      2223344


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh
Q 018406          259 GSAFGALAIAMGISNMLFFIG  279 (356)
Q Consensus       259 ~~~f~i~~~~~~i~~~~~~~~  279 (356)
                      ...|+..+...++..+.++..
T Consensus       466 ~~~F~~~g~v~i~~~~~~~~~  486 (498)
T COG3104         466 GRVFGTIGVVAIVIGILLLLL  486 (498)
T ss_pred             hhhHHHHHHHHHHHHHHHHHh
Confidence            556666665544444443333

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.90  E-value=0.29  Score=50.98  Aligned_cols=185  Identities=11%  Similarity=-0.092  Sum_probs=129.1

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCC
Q 018406          100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC  179 (356)
Q Consensus       100 ~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (356)
                      .+...........++.....+.+++....+|..-|+...+....+.++++.+...+... ..                  
T Consensus        15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a------------------   75 (654)
T TIGR00926        15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GA------------------   75 (654)
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-cc------------------
Confidence            34444567788899999999999999999999977778888888888888887776542 00                  


Q ss_pred             CCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-h
Q 018406          180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-W  258 (356)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w  258 (356)
                       .+.........+..+.++++.+|..++-+.+.+++++..+   ...+....++|++..+.+.+ |.+++..+..... +
T Consensus        76 -~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~  150 (654)
T TIGR00926        76 -IPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGD  150 (654)
T ss_pred             -CcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence             0111223445567778889999999999999999998654   33345799999998887665 4556666665544 3


Q ss_pred             hH------HHH-HHHHHHHHHHHHHHhhcccccccCCCCChhHHHHHHHHHHHhccc
Q 018406          259 GS------AFG-ALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRH  308 (356)
Q Consensus       259 ~~------~f~-i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~  308 (356)
                      ..      +|. ..++.+++.++.++.....++..++.+.....+.++........+
T Consensus       151 ~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~  207 (654)
T TIGR00926       151 VGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR  207 (654)
T ss_pred             hcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH
Confidence            21      233 455556666666777777777777776665667777766665443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.76  E-value=2.3  Score=42.01  Aligned_cols=187  Identities=9%  Similarity=-0.128  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~  151 (356)
                      +.+....++.+...=......+.|+...+.-+.--.+..-.+-.+...+..+..|.+.||. -|.+++..+.++--+...
T Consensus         5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv~   83 (432)
T PF06963_consen    5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSVA   83 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHHH
Confidence            4444444554444333333455666666544444444444555666667777778899998 899988877665333222


Q ss_pred             H----HHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          152 G----ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       152 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      .    +......+..               ... ........+.+..++..+..=+..+...+.--|+...-..++...+
T Consensus        84 ~s~~~~~~l~~~~~~---------------~~~-~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~L  147 (432)
T PF06963_consen   84 ASCALFLLLLSYPSS---------------SSQ-SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGAL  147 (432)
T ss_pred             HHHHHHHHHHhCCcc---------------ccc-cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhH
Confidence            2    2211110000               000 0011122222222222222222223333333444332111111224


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML  275 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~  275 (356)
                      .+.....-=.=.+.-.++|++.|.+.+..+...+..+.++..++++.+
T Consensus       148 a~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  148 ARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            444433322234457789999999988888877777666666655544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=95.45  E-value=0.21  Score=49.13  Aligned_cols=138  Identities=9%  Similarity=-0.027  Sum_probs=74.8

Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccc
Q 018406           96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL---GRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI  172 (356)
Q Consensus        96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~---GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  172 (356)
                      ..+-.|++..+......+...++.+|.++||.++|++-   -|-.+..+..+....+...........   +.  .+.  
T Consensus       274 ~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~---~~--~~~--  346 (493)
T KOG1330|consen  274 SYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLF---PA--FTS--  346 (493)
T ss_pred             HHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHH---Hh--hhh--
Confidence            33445667777778888899999999999999999941   111222333222222221111100000   00  000  


Q ss_pred             ccccCCCCCcchhhHHHHHHHHHHHHHhh-hchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHH-HHHHHHHHHHHH
Q 018406          173 SQLLGSCEPAKSWQMLYLYTVLYITGFGA-AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV-TVGAIVAFTLVV  250 (356)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~-g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~-~iG~~i~p~i~~  250 (356)
                                  .... +.+.++++|+-. -...+.......+..|+..      |..++.+..... .+|.+-+|.+.|
T Consensus       347 ------------~s~~-~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~------Rt~a~a~~~~~~h~fgd~~~p~ivG  407 (493)
T KOG1330|consen  347 ------------SSMI-FGLILFLVGETISWFNWATNNPIFLEVVPPSR------RTTAYALDTVFEHIFGDAASPYIVG  407 (493)
T ss_pred             ------------HHHH-HHHHHHHHHHHHHhcccccccceeeEecCccc------ccHHHHHHHHHHHHhccCCCcceeh
Confidence                        1111 222223333222 2233445556678888776      888888876544 556666676888


Q ss_pred             HHHhhc-chh
Q 018406          251 YIQMEH-GWG  259 (356)
Q Consensus       251 ~i~~~~-gw~  259 (356)
                      .+.++. ||+
T Consensus       408 ilsd~l~g~~  417 (493)
T KOG1330|consen  408 ILSDKLRGYK  417 (493)
T ss_pred             hHHHHhhCCC
Confidence            888875 666

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=95.30  E-value=0.017  Score=57.54  Aligned_cols=67  Identities=13%  Similarity=0.083  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHHHHHHHHHH
Q 018406           87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLAGLTGITL  155 (356)
Q Consensus        87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~-~~~~l~~~g~~~~~~  155 (356)
                      .+...+..|+ +.+|+++.+.+.++..--+..+++.|++|+++||| -+++.++ .+.+..+...+++.+
T Consensus        29 ~l~pll~vy~-kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~a~fll~f   96 (618)
T KOG3762|consen   29 SLFPLLAVYF-KQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVTATFLLVF   96 (618)
T ss_pred             ccchHHHHHH-HHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHheee
Confidence            3555667776 47999999999999999999999999999999999 5555444 445555555555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=94.67  E-value=0.1  Score=51.91  Aligned_cols=197  Identities=13%  Similarity=0.079  Sum_probs=115.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcch---hHHHH
Q 018406           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGIS--QASSVLGGFLADAYLGR---YWTIA  140 (356)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~--~~~~~~~G~lsD~~~GR---r~~i~  140 (356)
                      -.|+..+.++...+...+.+..+.+-........++++..++....+......  ....+...+..-+. |+   |..++
T Consensus       259 ~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l-~~i~~r~~~~  337 (488)
T KOG2325|consen  259 LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRL-GKIDKRRIIL  337 (488)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hhhccceeee
Confidence            45777788888888888887766665666666677877766544443322222  22233334444443 43   44444


Q ss_pred             HHHHH-HHHHHHHHHHHh--hcccc-CCC-CCCccccccccCC-CCCcchhhHHHHHHHH-HHHHHhhhchhhhhhhhhh
Q 018406          141 IFTTI-YLAGLTGITLCA--TMKVF-MPN-QDNCDRISQLLGS-CEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGA  213 (356)
Q Consensus       141 ~~~~l-~~~g~~~~~~~~--~~~~~-~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~gig~g~~~~~~~~~~a  213 (356)
                      .+.++ +....+.+.-..  ..|.. .+. .-.|..   ..++ |......+...++++. ++.|++.-.+.....+..+
T Consensus       338 ~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~---~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlyS  414 (488)
T KOG2325|consen  338 LGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDF---EEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYS  414 (488)
T ss_pred             ehHHHHHHhhheeeeeccccccccccccccccCcCc---ccchhhccCcccChhhheeehhheeccccccccchHHHHHH
Confidence            44333 322222111000  00000 000 001110   0111 6666666666666665 5567777777788889999


Q ss_pred             ccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406          214 DQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (356)
Q Consensus       214 d~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~  272 (356)
                      ++..+++      .+...+++.....++..++|++...+-...|.++.+.+.....++.
T Consensus       415 kiLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~  467 (488)
T KOG2325|consen  415 KILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV  467 (488)
T ss_pred             HHhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence            9999988      6777788888888999999999988888888877766655554333

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=94.33  E-value=1.2  Score=43.01  Aligned_cols=159  Identities=14%  Similarity=0.118  Sum_probs=89.4

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcchhHH
Q 018406           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD-----AYLGRYWT  138 (356)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD-----~~~GRr~~  138 (356)
                      .++..+.++++++..+....-. |....+| ++-+.-|.|-...+.....+  .=+-.-++++++-|     |+ ||||.
T Consensus        26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP-~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIP-LLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCCch-hHhhhhH-HHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence            4566677888888888876664 5666444 44445566655433322221  11234567788888     76 99987


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 018406          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (356)
Q Consensus       139 i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~  218 (356)
                      -++=+ -+.+|.++..++...+.....               .....+...+....+++-++.+.-.-.+-+..-.+..+
T Consensus       101 Wvvp~-q~llG~~mllLs~~v~~~~g~---------------ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~  164 (510)
T KOG3574|consen  101 WVVPC-QYLLGLFMLLLSYLVDRGLGG---------------NGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSR  164 (510)
T ss_pred             eeeeh-HHHHHHHHHHHhhCCCccccc---------------CCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH
Confidence            55432 244555555555432221110               01111233333344556666666656666666666665


Q ss_pred             CChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018406          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV  249 (356)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~  249 (356)
                      ++      .|-+.....++.+.|.+++..+.
T Consensus       165 e~------lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  165 EN------LGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             hh------cCchhHHHHHHHhhhHHhhccee
Confidence            55      66666677777888888877654

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.00  E-value=0.64  Score=45.36  Aligned_cols=63  Identities=8%  Similarity=0.074  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (356)
Q Consensus       186 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~  254 (356)
                      +.+.+++..+..|+..|+...+....+.|..++++      |.-.++.-.++-.+|..++.+++-++..
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            35556666677899889999999999999887665      7788888777777887777766655544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=93.71  E-value=8.4  Score=38.59  Aligned_cols=71  Identities=15%  Similarity=0.116  Sum_probs=53.0

Q ss_pred             HHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406          197 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS  272 (356)
Q Consensus       197 ~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~  272 (356)
                      .++.........-..+.+++|++.     .|+.+++-++...++.+.+..++.+.+....||..+..+.-+++++.
T Consensus       276 y~~~~nlve~~~k~~v~~~~p~~~-----~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit  346 (472)
T TIGR00769       276 YGISINLVEVTWKSKLKAQYPSPN-----EYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT  346 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            445555566677788889998655     48999999888888888666666789999999998777655555443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=93.13  E-value=8.1  Score=36.72  Aligned_cols=153  Identities=17%  Similarity=0.170  Sum_probs=83.9

Q ss_pred             ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 018406           61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (356)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~  140 (356)
                      ++.++..-|.++.+....+....++-|. .++......++|..  ..++    ........+++.+.+..+ +|-|+++.
T Consensus        21 ~r~~~~~~knv~i~s~~fl~~f~a~~gl-~nlq~~vn~~lg~~--sl~~----~y~~l~~s~m~~~~~Ir~-~g~K~tm~   92 (390)
T KOG3097|consen   21 RRKRLGILKNVLILSIAFLLTFTAYLGL-QNLQTSVNYDLGTV--SLGA----LYLSLIDSSMFMPLLIRF-LGTKWTMV   92 (390)
T ss_pred             cccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCcccc--hhhh----hhHHHHHHHHHHHHHHHH-HhhHHHHH
Confidence            3444555667666666655555555443 34555443333321  1111    122233344444466665 49999998


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 018406          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (356)
Q Consensus       141 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~  220 (356)
                      ++...+.........        |                     .+..++.+-.+.|+|.+...+.-.+|+++.-....
T Consensus        93 lav~~Y~lyiA~Nl~--------p---------------------r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya  143 (390)
T KOG3097|consen   93 LAVFPYALYIAANLE--------P---------------------RYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYA  143 (390)
T ss_pred             HHHHHHHHHHHhhcc--------h---------------------hHHhhccHHHhhccccccccccCcceecHHHHHHH
Confidence            887776543322111        1                     24556667778899988888777777766554322


Q ss_pred             hh-----h----hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018406          221 KD-----Y----KTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (356)
Q Consensus       221 ~~-----~----~~~r~~~~~~~~~~~~iG~~i~p~i~~  250 (356)
                      ..     +    .+-.+-++.+++...-+|..++..+..
T Consensus       144 ~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~  182 (390)
T KOG3097|consen  144 NQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMT  182 (390)
T ss_pred             HhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            11     0    111345566666666677666665553

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=92.50  E-value=3.3  Score=40.45  Aligned_cols=78  Identities=9%  Similarity=0.044  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHH
Q 018406          110 AVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY  189 (356)
Q Consensus       110 ~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (356)
                      ++..-.+-..+.-++.-++.+|. --..=+.+..++.++|+++.+++.                            +.++
T Consensus        64 Vlladi~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~~----------------------------~v~~  114 (402)
T PF02487_consen   64 VLLADILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFSP----------------------------SVWV  114 (402)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeecc----------------------------chhH
Confidence            33334445555556666777775 322223345556667777666542                            4566


Q ss_pred             HHHHHHHHHHhhhchhhhhhhhhhccCC
Q 018406          190 LYTVLYITGFGAAGIRPCVSSFGADQFD  217 (356)
Q Consensus       190 ~~~~~~l~gig~g~~~~~~~~~~ad~f~  217 (356)
                      -+++.++.+++.|.......++.+ .++
T Consensus       115 ~l~Gv~las~ssg~GE~tfL~lt~-~y~  141 (402)
T PF02487_consen  115 RLLGVVLASLSSGLGEVTFLSLTH-FYG  141 (402)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHH-hcC
Confidence            678888888888887777666543 555

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.03  E-value=13  Score=37.53  Aligned_cols=169  Identities=13%  Similarity=0.094  Sum_probs=89.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcchhHHHHH
Q 018406           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAI  141 (356)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~-~~~~~~~~~G~lsD~~~GRr~~i~~  141 (356)
                      .-++.++.+.+..++..+.+..+- .    +.+.+   .........+-....+ .+.+..++-.++++++ +|.++..+
T Consensus        21 ~E~~k~~~l~~m~f~i~f~y~~lR-~----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~   94 (491)
T PF03219_consen   21 SELKKFLPLALMFFFILFNYTILR-D----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYI   94 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-H----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            345666777776666655543221 1    11111   1133333333333333 4455567788999998 99998887


Q ss_pred             HHHHHHHHHHHHHHHhhccc---cCCCCCCccccccccCCCCCcchhh-------HHHHHHHHHHHH--Hhhhchhhhhh
Q 018406          142 FTTIYLAGLTGITLCATMKV---FMPNQDNCDRISQLLGSCEPAKSWQ-------MLYLYTVLYITG--FGAAGIRPCVS  209 (356)
Q Consensus       142 ~~~l~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~g--ig~g~~~~~~~  209 (356)
                      ....++....+.++... |.   ++|+ ..+++    .... .+.+..       .|.+. ..++.+  .|.-...-...
T Consensus        95 ~~~~F~~fF~~f~~vly-P~~~~lhp~-~~~~~----~~~~-~~~~~~~~i~~~~~Wt~s-lfYv~aElwgsvvlSlLFW  166 (491)
T PF03219_consen   95 IIIPFLGFFALFAFVLY-PNRDILHPD-AFADK----LLAI-LPPGFKGFIAMFRNWTFS-LFYVMAELWGSVVLSLLFW  166 (491)
T ss_pred             HHHHHHHHHHHHHHHHh-hchhhcCCC-HHHHH----hhhh-ccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            77766666555554431 11   1221 01100    0000 000000       01111 111111  12111222457


Q ss_pred             hhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406          210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (356)
Q Consensus       210 ~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~  254 (356)
                      ++..|.+..++      ..+++..+..+.|+|..++..+..++.+
T Consensus       167 ~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  167 GFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78889998777      7899999999999999999888887776

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK10263 DNA translocase FtsK; Provisional

Probab=91.48  E-value=4  Score=45.34  Aligned_cols=31  Identities=16%  Similarity=0.022  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406          240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMG  270 (356)
Q Consensus       240 iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~  270 (356)
                      .|+++|.++..++...+|...+.++..++++
T Consensus       142 gGGIIG~lLs~lL~~LfG~vGa~LILLlllL  172 (1355)
T PRK10263        142 SGGVIGSLLSTTLQPLLHSSGGTIALLCVWA  172 (1355)
T ss_pred             ccchHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4666777666666666665333333333333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=90.73  E-value=1.2  Score=43.90  Aligned_cols=127  Identities=11%  Similarity=-0.075  Sum_probs=71.4

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhh-cc-cc-CCCCCCccccccccCC
Q 018406          102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT-MK-VF-MPNQDNCDRISQLLGS  178 (356)
Q Consensus       102 ~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~  178 (356)
                      ++....+.+..+..++..++..+...+--++ .-|+++.++.++.++..+...+... .. .+ .++             
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~-~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d-------------  317 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNW-SWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPD-------------  317 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCC-------------
Confidence            7777766666666666666666554432233 4566666666555544332221100 00 00 000             


Q ss_pred             CCCcchhhHHHHHHH-HHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018406          179 CEPAKSWQMLYLYTV-LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG  257 (356)
Q Consensus       179 ~~~~~~~~~~~~~~~-~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g  257 (356)
                              . +++.+ -++..+..+...-+...+.+++-|+..      -+..+++.....|+|..++..++.++.+..+
T Consensus       318 --------~-~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  318 --------Q-WFALGDTILEEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             --------e-EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                    1 12222 234444445555566678899999876      6777877777788888888877777765443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=90.70  E-value=20  Score=36.09  Aligned_cols=73  Identities=16%  Similarity=0.181  Sum_probs=50.8

Q ss_pred             HHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406          197 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (356)
Q Consensus       197 ~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~  274 (356)
                      .++..-.....--..+.+++|+..     .+..+++-++...++-+.+-.++++.+....||..+..+.-+++++..+
T Consensus       292 Ygi~inLvE~~wK~~lk~~~~~~~-----~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~~  364 (491)
T PF03219_consen  292 YGISINLVEVVWKSQLKQLYPDPN-----DYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITGL  364 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHH
Confidence            445555566667777788888765     3788888877666666666667778899999999887775454444433

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=89.92  E-value=23  Score=35.51  Aligned_cols=171  Identities=11%  Similarity=0.051  Sum_probs=96.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcchhHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIA  140 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~a~~~~~~~~~-~~~~~~~~~G~lsD~~~GRr~~i~  140 (356)
                      |.-|+.++.+.+..+|..+.++.+-.     +...+.+   .+.....+-....+ .+.+..++-+++.+++ -|.+++.
T Consensus        23 r~E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~   96 (509)
T COG3202          23 RYELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFY   96 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHH
Confidence            34577777777777776666542222     2333333   34445555566666 6777888899999997 8888887


Q ss_pred             HHHHHHHHHHHHHHHHhhccc---cCCCCCCccccccccCCCCCcch--h-----hHHHHHHHHHHHH--Hhhhchhhhh
Q 018406          141 IFTTIYLAGLTGITLCATMKV---FMPNQDNCDRISQLLGSCEPAKS--W-----QMLYLYTVLYITG--FGAAGIRPCV  208 (356)
Q Consensus       141 ~~~~l~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~l~g--ig~g~~~~~~  208 (356)
                      +-...+....+++++... |.   ++|+. ...    ++.....|..  +     +.|. +...++.+  .|.=...-..
T Consensus        97 ~~~~~F~~fF~LFa~Vi~-P~~~~~hp~~-~~~----~~~~~~~p~~l~~~ili~~~Ws-~s~~Yi~aELWgslV~S~lF  169 (509)
T COG3202          97 IILGFFLGFFALFAFVIY-PYKDILHPDP-EFS----RDLFADLPMFLKWFILIVGEWS-YSLFYIMAELWGSLVLSLLF  169 (509)
T ss_pred             HHHHHHHHHHHHHHHHHh-ccccccCCCH-HHH----HHHHhhCCccceeeeEeecchH-HHHHHHHHHHHHHHHHHHHH
Confidence            777777666666665442 11   00100 000    0000000100  0     0011 11122222  1211122245


Q ss_pred             hhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406          209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (356)
Q Consensus       209 ~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~  254 (356)
                      ..+.-|++..++      -.+++..++...|++..++..+..++..
T Consensus       170 w~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         170 WQFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            567778888776      7899999999999999998888887765

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=88.94  E-value=24  Score=34.47  Aligned_cols=32  Identities=9%  Similarity=0.199  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 018406          187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDER  219 (356)
Q Consensus       187 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~  219 (356)
                      ....++..++.+++.|..++......++ ||.+
T Consensus       117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~  148 (406)
T KOG1479|consen  117 FLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSE  148 (406)
T ss_pred             HHHHHHHHHHHhhhhhhhccchhhhhhc-CCHH
Confidence            3444445566777777777777776544 5543

>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.22  E-value=2.5  Score=31.84  Aligned_cols=57  Identities=21%  Similarity=0.246  Sum_probs=34.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcccccccC
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL  287 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~  287 (356)
                      ..+=-++++...+|+++|.+ .|+.++.++|.  .++.++..++.+++.+.-.|.|++++
T Consensus        22 kkaEr~~q~ilti~aiVg~i-~Gf~~Qqls~t--vy~vg~~~v~t~li~LPpwP~y~rn~   78 (101)
T KOG4112|consen   22 KKAERFQQLILTIGAIVGFI-YGFAQQQLSVT--VYIVGAGFVFTLLITLPPWPWYRRNP   78 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHhcCCCchhhhcCc
Confidence            34445677788888888874 55666666663  34444444555555555556666543

>TIGR00806 rfc RFC reduced folate carrier

Probab=85.14  E-value=15  Score=37.04  Aligned_cols=97  Identities=11%  Similarity=0.052  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhh
Q 018406          107 SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ  186 (356)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (356)
                      -|.+-.+..+.+.+..++.|++-.++ .|.--+.++.+..+-+.+++..+.                          +.+
T Consensus       300 NG~veA~~tllga~~a~~ag~~~~~w-~~~~~l~l~v~s~~~~gll~~m~~--------------------------t~~  352 (511)
T TIGR00806       300 NGAVDAASTLLGAITSFIAGFVNIRW-ARWSKLLIAVVSAIQAGLVFWMSQ--------------------------SHD  352 (511)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCc-hhhHHHHHHHHHHHHHHHhhhhhc--------------------------ccc
Confidence            35556667778888899999987665 554334444433333332222211                          136


Q ss_pred             HHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHH
Q 018406          187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL  236 (356)
Q Consensus       187 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~  236 (356)
                      ++..|++.++.+.......+....-+|.....+.      .+-.|++..+
T Consensus       353 Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~------~aLvFGiNtf  396 (511)
T TIGR00806       353 IWVLYVTYVLFRGIYQFLVPIATFQIASSLSKEL------CALVFGINTF  396 (511)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------eEEEEecHHH
Confidence            8999999999888888888888888888877665      7888877544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=84.75  E-value=7.4  Score=36.10  Aligned_cols=136  Identities=13%  Similarity=0.093  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcch
Q 018406          107 SSNAVNNFLGISQASSVLGGFLADAYLGR--YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS  184 (356)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~G~lsD~~~GR--r~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (356)
                      -+.+.+.+.++..+|+-+...+..+- ..  ...+.+..++.++...+..+...   ..|.                  .
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~---vsP~------------------k  341 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSS---VSPS------------------K  341 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhc---cCCC------------------c
Confidence            36777778887777777766665543 11  23444554444433333222211   1111                  1


Q ss_pred             hhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--h--hcchhH
Q 018406          185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--M--EHGWGS  260 (356)
Q Consensus       185 ~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~--~--~~gw~~  260 (356)
                      .+...-+++..++-.+.|...|.+.-+=....|++.      |++.++++-.-.++-.-++.    |..  +  ..+-|.
T Consensus       342 es~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvL----ynlh~~~~p~~tr~  411 (454)
T KOG4332|consen  342 ESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVL----YNLHVDAFPTTTRN  411 (454)
T ss_pred             CCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhh----eecccccCccccch
Confidence            123333566666667778888888888777788777      89999998877666433221    111  1  134567


Q ss_pred             HHHHHHHHHHHHHH
Q 018406          261 AFGALAIAMGISNM  274 (356)
Q Consensus       261 ~f~i~~~~~~i~~~  274 (356)
                      .|.++.+.+.++.+
T Consensus       412 mf~icS~~~~~a~i  425 (454)
T KOG4332|consen  412 MFGICSAFLFVASI  425 (454)
T ss_pred             hhhhhHHHHHHHHH
Confidence            78887777665543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=84.19  E-value=17  Score=28.06  Aligned_cols=45  Identities=18%  Similarity=0.080  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406          107 SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG  152 (356)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~  152 (356)
                      .+.......++..+++.+.+.+.|.. |.+..+.+...+.+++.+.
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  133 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFIL  133 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHH
Confidence            34555667788889999999999987 8877777666555544433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=83.93  E-value=42  Score=32.25  Aligned_cols=54  Identities=15%  Similarity=0.106  Sum_probs=38.8

Q ss_pred             HHHHHhhhchhhhhhhhhhccCCCCChh-hhhhhhhHHHHHHHHHHHHHHHHHHH
Q 018406          195 YITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRFFNFFYLSVTVGAIVAFTL  248 (356)
Q Consensus       195 ~l~gig~g~~~~~~~~~~ad~f~~~~~~-~~~~r~~~~~~~~~~~~iG~~i~p~i  248 (356)
                      .++|+..+...+..+.++-.+.|.-+++ +....|..++.+..+..+|+.+.+.+
T Consensus       247 l~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l  301 (354)
T PF05631_consen  247 LLLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRL  301 (354)
T ss_pred             HHHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888888888888754432 12347888888888888888776543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=83.79  E-value=13  Score=36.79  Aligned_cols=55  Identities=13%  Similarity=0.184  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406          187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT  247 (356)
Q Consensus       187 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~  247 (356)
                      -+..++..++.|+..|-..+....+..+..++++      |..+..+..++.++|-.+|..
T Consensus       372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~  426 (437)
T TIGR00939       372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAV  426 (437)
T ss_pred             cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence            4556666788999999888888888888877544      444444444455555555543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=83.48  E-value=49  Score=32.75  Aligned_cols=32  Identities=13%  Similarity=0.135  Sum_probs=22.0

Q ss_pred             hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 018406          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (356)
Q Consensus       186 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~  218 (356)
                      .....++..++.|++.+...+...++.+ .||+
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~  136 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPS  136 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCH
Confidence            3445555566788888888887777655 6774

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=83.43  E-value=3.3  Score=40.98  Aligned_cols=90  Identities=9%  Similarity=-0.139  Sum_probs=60.2

Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC-h----HH-----------HHHHHHHHHHHHHHHHHHHH
Q 018406           64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKS-F----AD-----------SSNAVNNFLGISQASSVLGG  126 (356)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s-~----~~-----------a~~~~~~~~~~~~~~~~~~G  126 (356)
                      .+..+|..+.+++..++..++++.+.-+.+.++-++ ++=+ .    ++           -.+-+.++.....+.+.+.-
T Consensus       274 ~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~  353 (498)
T KOG0637|consen  274 LKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVE  353 (498)
T ss_pred             HhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence            355667889999999999999887777766665433 2211 1    11           14566677788888899999


Q ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406          127 FLADAYLGRYWTIAIFTTIYLAGLTGIT  154 (356)
Q Consensus       127 ~lsD~~~GRr~~i~~~~~l~~~g~~~~~  154 (356)
                      ++.+++ |-|+.++.+...+.++..+..
T Consensus       354 ~l~~~~-g~r~~y~~~~~~f~~~~~~~g  380 (498)
T KOG0637|consen  354 KLSRKF-GTRKRYWGGVNAFGLATGLAG  380 (498)
T ss_pred             HHHHhc-CcceEEeehhHHHHHHHHHHh
Confidence            999998 966666655554444444333

>COG3619 Predicted membrane protein [Function unknown]

Probab=80.61  E-value=42  Score=30.05  Aligned_cols=27  Identities=4%  Similarity=-0.167  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406          108 SNAVNNFLGISQASSVLGGFLADAYLGR  135 (356)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~G~lsD~~~GR  135 (356)
                      ........+...++..++..++-+. .|
T Consensus        58 a~~~~~pii~Fv~Gv~~~~~~~r~~-~~   84 (226)
T COG3619          58 AVLLLLPILAFVLGVAAAELISRRA-TR   84 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cc
Confidence            3444445555555555555555543 54

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=80.55  E-value=47  Score=32.62  Aligned_cols=97  Identities=11%  Similarity=0.019  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhh
Q 018406          107 SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ  186 (356)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (356)
                      -|.+-.+..+.+.++.+..|++..++ .+..-+.++.+..+.+..++..+.                          +.+
T Consensus       287 NG~VeA~~tllgA~~al~~g~v~~~w-~~~~~l~l~~~S~l~a~~L~lm~~--------------------------t~~  339 (412)
T PF01770_consen  287 NGAVEAASTLLGAIAALLAGYVKVNW-DRWGELALGVFSLLQAGLLFLMSF--------------------------TGN  339 (412)
T ss_pred             chHHHHHHHHHHHHHHHHHhHhhcch-HHHHHHHHHHHHHHHHHHHHHHHH--------------------------hhH
Confidence            46777778888888999999997665 775555545444443333333221                          126


Q ss_pred             HHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHH
Q 018406          187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL  236 (356)
Q Consensus       187 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~  236 (356)
                      ++..+++.++.+...-...+....-+|.....+.      .+-.|++..+
T Consensus       340 Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~------yaLVFGiNtf  383 (412)
T PF01770_consen  340 IWVCYAGYIIFRSLYMFLITIASFQIAKNLSEER------YALVFGINTF  383 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------eeeeeeeHHH
Confidence            8888888877776666666666666666666544      7777766433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	356
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		2e-11
4aps_A	491	Crystal Structure Of A Pot Family Peptide Transport		1e-04

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 73  FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD------SSNAVNNFLGISQASSVLGG 126
           +I  +E  ER +++G+   +  F+   +  S  +      + +  ++F+       +LGG
Sbjct: 16  YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGG 75
Query: 127 FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 186
           ++AD + G+Y TI   + IY  G       A + +F  +                     
Sbjct: 76  WIADRFFGKYNTILWLSLIYCVG------HAFLAIFEHSVQG------------------ 111
Query: 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246
               YT L++   G+ GI+P VSSF  DQFD+ +K       + F+ FY ++  G+  A 
Sbjct: 112 ---FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLA---QKAFDMFYFTINFGSFFAS 165
Query: 247 TLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP 288
             +  +    G   AFG   + M ++ + F++G   Y H  P
Sbjct: 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207

>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 37/211 (17%)
Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFL 128
           +F  EM ER +Y+G+   ++ +M+++     +H + A +++ +  +  +   S  +GGF+
Sbjct: 18  LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77
Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
           AD  +G     A+F    L  L  I L                 S L GS          
Sbjct: 78  ADRIIGA--RPAVFWGGVLIMLGHIVLALPFGA-----------SALFGSI--------- 115
Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
               +L I G G   ++P VS+     +DE  +      D  F+ F   + +GA +A  +
Sbjct: 116 ----ILIIIGTGF--LKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165
Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279
           V   Q   G+  AF   AI M I  ++++ G
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	356
2xut_A	524	Proton/peptide symporter family protein; transport	1e-61
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	1e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  204 bits (521), Expect = 1e-61
 Identities = 60/286 (20%), Positives = 110/286 (38%), Gaps = 39/286 (13%)

Query: 64  KTGGWIAAL-FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF------ADSSNAVNNFLG 116
               W   + +I  +E  ER +++G+   +  F+   +  S       A + +  ++F+ 
Sbjct: 6   DAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVI 65

Query: 117 ISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176
                 +LGG++AD + G+Y TI   + IY  G   + +                     
Sbjct: 66  GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH------------------ 107

Query: 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236
                     +   YT L++   G+ GI+P VSSF  DQFD+     K+   + F+ FY 
Sbjct: 108 ---------SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ---SNKSLAQKAFDMFYF 155

Query: 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 296
           ++  G+  A   +  +    G   AFG   + M ++ + F++G   Y H  P        
Sbjct: 156 TINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGF 215

Query: 297 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFS 342
             V+ +A   +     +  L  +  + G  SA      I      +
Sbjct: 216 LPVIRSALLTKVEGKGNIGL--VLALIGGVSAAYALVNIPTLGIVA 259

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 37/217 (17%)

Query: 74  IFGNEMAERMAYFGLSVNMVTFMFYVMHK-----SFADSSNAVNNFLGISQASSVLGGFL 128
           +F  EM ER +Y+G+   ++ +M++++       + A +++ +  +  +   S  +GGF+
Sbjct: 18  LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFV 77

Query: 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML 188
           AD  +G    +     + + G   +                            A  +   
Sbjct: 78  ADRIIGARPAVFWGGVLIMLGHIVL----------------------------ALPFGAS 109

Query: 189 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248
            L+  + +   G   ++P VS+     +DE  +      D  F+ F   + +GA +A  +
Sbjct: 110 ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLI 165

Query: 249 VVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285
           V   Q   G+  AF   AI M I  ++++ G      
Sbjct: 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 54/362 (14%), Positives = 101/362 (27%), Gaps = 113/362 (31%)

Query: 57  KPIADLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG 116
           K + D+ K+        I   E  + +     +V+    +F+ +          V  F+ 
Sbjct: 36  KDVQDMPKS--------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVE 84

Query: 117 ISQASSVLG---GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR-- 171
                 VL     FL           ++ T +Y+       L    +VF     N  R  
Sbjct: 85  -----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAK--YNVSRLQ 135

Query: 172 ----ISQLLGSCEPAKSWQMLYLYTVLY-ITGFG----AAGIRPCVSSFGADQFDERSKD 222
               + Q L    PAK         ++  + G G    A                +    
Sbjct: 136 PYLKLRQALLELRPAK-------NVLIDGVLGSGKTWVAL---------------DVCLS 173

Query: 223 YKTHLDRFFNFFYLSV----TVGAIVAFTLVVYIQMEHGWGS-AFGALAIAMGISN---- 273
           YK      F  F+L++    +   ++     +  Q++  W S +  +  I + I +    
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 274 MLFFIGTPLYRHRL---------------PGGSPL---TR---VAQVLVAAFRKR----- 307
           +   + +  Y + L                    +   TR   V   L AA         
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 308 -HAAFSSSELIGLY---------EVPGKHSAIKGS----GKIAHTDDFSLCEPADVWTRQ 353
                +  E+  L          ++P     +  +      IA     S+ +    W   
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLP--REVLTTNPRRLSIIAE----SIRDGLATWDN- 346

Query: 354 LW 355
            W
Sbjct: 347 -W 347

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	356
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.84
2xut_A	524	Proton/peptide symporter family protein; transport	99.82
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.78
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.72
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.65
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.57
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.53
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.47
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.41
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.25
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.24
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.21
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.91
2xut_A	524	Proton/peptide symporter family protein; transport	98.27

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.84  E-value=2.5e-19  Score=176.25  Aligned_cols=184  Identities=23%  Similarity=0.385  Sum_probs=161.4

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADA-YLGRYWT  138 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~-~~GRr~~  138 (356)
                      +++++.++.+.+..++..+.+|++..+++.|+++.     +|++..+.+++.+++.++..++.+++|+++|| + |||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~   87 (491)
T 4aps_A            9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA   87 (491)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence            45567788999999999999999999999999998     99999999999999999999999999999999 7 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 018406          139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE  218 (356)
Q Consensus       139 i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~  218 (356)
                      ++++.++..++.+++.++.                            +...++++|++.|+|.+...+...++++|.+|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  139 (491)
T 4aps_A           88 VFWGGVLIMLGHIVLALPF----------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDE  139 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSCC----------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHhh----------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence            9999999999888776532                            467788999999999999999999999999997


Q ss_pred             CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406          219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (356)
Q Consensus       219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~  281 (356)
                      ++    ++|+..+++++.+.++|..++|.+++++.+..||++.|++.++..++++++++...+
T Consensus       140 ~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  198 (491)
T 4aps_A          140 HD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK  198 (491)
T ss_dssp             CT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            66    247788899999999999999999999999999999999987776666655554433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.82  E-value=3.6e-19  Score=176.65  Aligned_cols=210  Identities=25%  Similarity=0.446  Sum_probs=159.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 018406           67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA  140 (356)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~  140 (356)
                      +++.++.+.+..++..+++|++..+++.|+++++|      ++..+.+++.+++.++..++.+++|+++||++|||+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            34556778888999999999999999999999999      999999999999999999999999999999559999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 018406          141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS  220 (356)
Q Consensus       141 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~  220 (356)
                      ++.++..++.+++.++.                           .+.+.++++|++.|+|.++..+...++++|.+|+++
T Consensus        90 ~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  142 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIFE---------------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN  142 (524)
T ss_dssp             HHHHHHHHHHHHHHHTS---------------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred             HHHHHHHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence            99999999888877642                           036788899999999999999999999999999766


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhHHHHHHH
Q 018406          221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL  300 (356)
Q Consensus       221 ~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl  300 (356)
                         ++++.+.+++++...++|..++|.+++++.+..||++.|++.+++.++.+++++...++++..+++.++..+..+.+
T Consensus       143 ---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (524)
T 2xut_A          143 ---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI  219 (524)
T ss_dssp             ---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence               12235666779999999999999999999998999999998888776666655554444443333333333333443


Q ss_pred             HHHHhc
Q 018406          301 VAAFRK  306 (356)
Q Consensus       301 ~~~~~~  306 (356)
                      ....++
T Consensus       220 ~~~~~~  225 (524)
T 2xut_A          220 RSALLT  225 (524)
T ss_dssp             ------
T ss_pred             HHHHhh
Confidence            333333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.78  E-value=3.7e-17  Score=157.88  Aligned_cols=180  Identities=12%  Similarity=-0.024  Sum_probs=147.8

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406           65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT  144 (356)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~  144 (356)
                      +++|+.++.+.+..++..+..+.+ ..+..++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLN-DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence            456666666666666666666544 4445567889999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      ++.++.+++.....                         ..+.+.++++|++.|+|.+...+...++++|.+|+++    
T Consensus       100 ~~~~~~~~~~~~~~-------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~----  150 (438)
T 3o7q_A          100 LYALGAALFWPAAE-------------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS----  150 (438)
T ss_dssp             HHHHHHHHHHHHHH-------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred             HHHHHHHHHHhccc-------------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence            99999988743221                         0158889999999999999999999999999999887    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcc-------------------------hhHHHHHHHHHHHHHHHHHH
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~-~~~g-------------------------w~~~f~i~~~~~~i~~~~~~  277 (356)
                        |+..+++++....+|..++|.+++++. +..+                         |++.|++.+++.++..++++
T Consensus       151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  227 (438)
T 3o7q_A          151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM  227 (438)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence              899999999999999999999999888 5444                         89999776666554444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.72  E-value=5.3e-17  Score=157.18  Aligned_cols=176  Identities=13%  Similarity=0.075  Sum_probs=147.1

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (356)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l  145 (356)
                      .+|+.++.+.+..++..+..+.+...++ ++.+++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~  101 (451)
T 1pw4_A           25 LRWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHH
Confidence            3456666666666666666554444444 555677 9999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHH----HhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCh
Q 018406          146 YLAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK  221 (356)
Q Consensus       146 ~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~  221 (356)
                      +.++.+++.+    +.                            +.+.++++|++.|++.+...+...++++|.+|+++ 
T Consensus       102 ~~~~~~~~~~~~~~~~----------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-  152 (451)
T 1pw4_A          102 AAAVMLFMGFVPWATS----------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE-  152 (451)
T ss_dssp             HHHHHHHHHHCHHHHS----------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-
T ss_pred             HHHHHHHHHhhhhccc----------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-
Confidence            9999988877    42                            35678899999999999999999999999999776 


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHh
Q 018406          222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       222 ~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~~  278 (356)
                           |+..+++++.+..+|..++|.+++++.+..| |++.|++.+++.++..++.+.
T Consensus       153 -----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~  205 (451)
T 1pw4_A          153 -----RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA  205 (451)
T ss_dssp             -----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence                 9999999999999999999999999888898 999999888776655544433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.65  E-value=1e-15  Score=145.15  Aligned_cols=167  Identities=13%  Similarity=0.115  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~  151 (356)
                      +.+.+..++..+....+...++ .+.+++|.+..+.+.+.+.+.++..++.++.|+++||+ |||++++++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIA-DMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            3445555555555554554444 45678999999999999999999999999999999998 999999999999999988


Q ss_pred             HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (356)
                      ++.++.                            +...+++++++.|++.+...+...+++.|.+|+++      |++.+
T Consensus        81 ~~~~~~----------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~  126 (375)
T 2gfp_A           81 VAVTTS----------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN  126 (375)
T ss_dssp             HHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred             HHHHhc----------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence            887753                            57888999999999999999999999999999877      89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406          232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM  274 (356)
Q Consensus       232 ~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~  274 (356)
                      ++++....+|..++|.+++++.+..||++.|++.++..++..+
T Consensus       127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888999999887776554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.57  E-value=9.9e-14  Score=136.00  Aligned_cols=133  Identities=12%  Similarity=0.108  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcch
Q 018406          105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS  184 (356)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (356)
                      ...+++++.+.++..++++++|+++||+ |||++++++.+++.++.++++++.........          ...-...-.
T Consensus        55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~----------~~~~~~~~a  123 (491)
T 4gc0_A           55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP----------DNTVPVYLA  123 (491)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS----------SSSCCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----------hhHHHHHHh
Confidence            4557888899999999999999999998 99999999999999999888753210000000          000000001


Q ss_pred             hhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406          185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM  254 (356)
Q Consensus       185 ~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~  254 (356)
                      .+...++++|++.|+|.|+..+..+.+++|..|++.      |+...++++.+..+|..+++.++..+..
T Consensus       124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~  187 (491)
T 4gc0_A          124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIAR  187 (491)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence            368899999999999999999999999999999877      8999999999999999998877766554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.53  E-value=2.7e-13  Score=130.98  Aligned_cols=179  Identities=15%  Similarity=0.131  Sum_probs=146.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHH
Q 018406           68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIY  146 (356)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~-GRr~~i~~~~~l~  146 (356)
                      .+.++...+..++..+.++++..+++.|+++.+|++..+++.+.+...++..++.++.|+++||+. |||+.+.++.++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL  330 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            456778888888888888889999999999889999999999999999999999999999999932 8888887777665


Q ss_pred             H-HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       147 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      . ++.+++.+.       +                   ..+...+++..++.|++.++..+....+..|.+|++.     
T Consensus       331 ~~~~~~~~~~~-------~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----  379 (451)
T 1pw4_A          331 VTIATIVYWMN-------P-------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA-----  379 (451)
T ss_dssp             HHHHHHHTTSC-------C-------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH-----
T ss_pred             HHHHHHHHHHh-------c-------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh-----
Confidence            5 444433321       1                   0135666777788888888888888899999999876     


Q ss_pred             hhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          226 HLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       226 ~r~~~~~~~~~~~~i-G~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                       ++..+++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus       380 -~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          380 -AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence             99999999999999 99999999999999999999998887777666555444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.47  E-value=3.8e-12  Score=122.52  Aligned_cols=167  Identities=10%  Similarity=0.008  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~  147 (356)
                      +.++..++..++.....+++..+++.| +++.+|++..+++.....+.++..++.+++|+++||+ |||+++.++.++..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM  336 (438)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            345666677777777788888899999 8888899999999999999999999999999999997 99999999988888


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      ++.+++....                            +.. .++..++.+++.+...+...++..|.+|++       +
T Consensus       337 ~~~~~~~~~~----------------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~  380 (438)
T 3o7q_A          337 ALCLISAFAG----------------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------T  380 (438)
T ss_dssp             HHHHHHHHCC----------------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------H
T ss_pred             HHHHHHHHcC----------------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------c
Confidence            7776665531                            222 234457788888888899999989999843       3


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISN  273 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~  273 (356)
                      +...++.. ...+|+.++|.+.+++.+..| ++..|.+.+++.++.+
T Consensus       381 ~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          381 KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred             cchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            33444444 566999999999999999998 9999887666554433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.41  E-value=2.8e-12  Score=123.89  Aligned_cols=173  Identities=10%  Similarity=0.060  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406           71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL  147 (356)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~  147 (356)
                      .+...+..++....++.+..+++.|+.+.++..   ....+....+..++..++.+++|+++||+ |||+++.++.++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~  300 (417)
T 2cfq_A          222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS  300 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence            344444334444444455566788887666532   23345566666677788899999999998 99999988887776


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      ++.+++.+.       +                     +...+++..++.+++.+...+....+.+|.+|++.      |
T Consensus       301 ~~~~~~~~~-------~---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~  346 (417)
T 2cfq_A          301 VRIIGSSFA-------T---------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S  346 (417)
T ss_dssp             HHHHHHTTC-------C---------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred             HHHHHHHHh-------c---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence            665444321       1                     24455555666677766666677889999999766      8


Q ss_pred             hhHHHH-HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406          228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       228 ~~~~~~-~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~  278 (356)
                      ++..++ ++....+|+.++|.+.+++.+..|+...|.+.+++.+++.++.+.
T Consensus       347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            888887 577778999999999999998888888888877776666554433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.25  E-value=7.1e-13  Score=128.03  Aligned_cols=170  Identities=11%  Similarity=-0.113  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      |..+.+....++..+.+..+..+++.|+++++|++..+.+.+.+.+.++..++.+++|+++||+ |||++++++.+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            3455566666666666666678899999999999999999999999999999999999999998 999999988877654


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhH-HHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      +...+......+                         .. ..++.++++.+++.+...+...+...+..++..    +++
T Consensus        86 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~  136 (417)
T 2cfq_A           86 MFAPFFIFIFGP-------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRS  136 (417)
T ss_dssp             CHHHHHHHTHHH-------------------------HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHH
T ss_pred             HHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhc
Confidence            322221100000                         00 012233334344333333333333333332111    124


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM  269 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~  269 (356)
                      +..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus       137 ~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~  177 (417)
T 2cfq_A          137 NFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA  177 (417)
T ss_dssp             TCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence            555666666778899999999998876 57998887655543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.24  E-value=2.2e-11  Score=119.37  Aligned_cols=185  Identities=12%  Similarity=0.023  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-----HHHH
Q 018406           70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTT  144 (356)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~-----~~~~  144 (356)
                      ..+.+.+..++..+.++.....++.|+.+.++.+....+.......++..++.++.|+++||+ |||+...     ++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~  362 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM  362 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence            344455455555556666667788899888888866777777888888888899999999998 9986544     6666


Q ss_pred             HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406          145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK  224 (356)
Q Consensus       145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~  224 (356)
                      +..++.+++.+......                   .....+...++++.++.|+|.+...+....+..|.+|++.    
T Consensus       363 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~----  419 (491)
T 4aps_A          363 FAGLSFLLMAIPGALYG-------------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF----  419 (491)
T ss_dssp             HHHHHHTTTHHHHHHCC-------------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC----
T ss_pred             HHHHHHHHHHHHHHhcC-------------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence            66666555544321000                   0001134566677788899999888999999999999887    


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406          225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP  281 (356)
Q Consensus       225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~  281 (356)
                        |+...++++...++|..+++.+.+++.+. ++.+.|.+.+++.++..++++...+
T Consensus       420 --~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  473 (491)
T 4aps_A          420 --NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK  473 (491)
T ss_dssp             --SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              89999999999999999999988887653 5666777766666555555544433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.21  E-value=1.5e-09  Score=106.01  Aligned_cols=180  Identities=9%  Similarity=0.013  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406           72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT  151 (356)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~  151 (356)
                      +..+...++..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+..+..++.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~  357 (491)
T 4gc0_A          279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMF  357 (491)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHH
Confidence            3333333333333333333444556667888888777777778888899999999999998 999999999888887777


Q ss_pred             HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406          152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF  231 (356)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~  231 (356)
                      .+......    ..                  ......+.+..+..+++ .+..+....+.+|.||++.      |+...
T Consensus       358 ~l~~~~~~----~~------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~  408 (491)
T 4gc0_A          358 SLGTAFYT----QA------------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKAL  408 (491)
T ss_dssp             HHHHHHHT----TC------------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHH
T ss_pred             HHHHHHhc----cc------------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHH
Confidence            66554320    00                  01112222222222232 2334566789999999998      99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh------hcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406          232 NFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTP  281 (356)
Q Consensus       232 ~~~~~~~~iG~~i~p~i~~~i~~------~~gw~~~f~i~~~~~~i~~~~~~~~~~  281 (356)
                      ++.+....+|+.+++.+..++.+      ..++.+.|++.+++.+++.++.++..|
T Consensus       409 g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P  464 (491)
T 4gc0_A          409 AIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  464 (491)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence            99888888888888877666543      334556777777766666665544444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.91  E-value=5.6e-10  Score=105.36  Aligned_cols=164  Identities=12%  Similarity=-0.095  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH-HH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL  147 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l-~~  147 (356)
                      |.++...+..++.....+++..+++.|+++.+|++..+++.+.....++..++.++.++++||+ ||+  +.++..+ ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            4566777777777788888888888898888999999999999999999999999999999997 872  2233322 22


Q ss_pred             HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406          148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL  227 (356)
Q Consensus       148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r  227 (356)
                      ++.........     +                   ..+.+.+++..++.+++.+...+...++..|.+| +.      +
T Consensus       276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~  324 (375)
T 2gfp_A          276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A  324 (375)
T ss_dssp             TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred             HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence            22221111110     0                   0135556677788899999989999999999987 44      8


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 018406          228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA  266 (356)
Q Consensus       228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~  266 (356)
                      ++..++++...++|..++|.+.+++.+..+|...+.+..
T Consensus       325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            999999999999999999999999888777877766543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.27  E-value=3.9e-07  Score=89.76  Aligned_cols=87  Identities=16%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--ch-----
Q 018406          186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW-----  258 (356)
Q Consensus       186 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~--gw-----  258 (356)
                      +...++++.++.|++.+...+....+..|.+|++.      |+..+++++....+|+.++|.+.+++.+..  +|     
T Consensus       404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~  477 (524)
T 2xut_A          404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG  477 (524)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            34556677888999999999999999999999887      899999999999999999999999887643  23     


Q ss_pred             ----hHHHHHHHHHHHHHHHHHHh
Q 018406          259 ----GSAFGALAIAMGISNMLFFI  278 (356)
Q Consensus       259 ----~~~f~i~~~~~~i~~~~~~~  278 (356)
                          +..|++.+++.+++.+++++
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~  501 (524)
T 2xut_A          478 MSVTAFQMFFFAGFAILAAIVFAL  501 (524)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ccccccHHHHHHHHHHHHHHHHHH
Confidence                22255555555554444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	356
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.69
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.49
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.46
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.38

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.6e-16  Score=150.61  Aligned_cols=157  Identities=11%  Similarity=0.045  Sum_probs=131.4

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 018406           91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD  170 (356)
Q Consensus        91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  170 (356)
                      .+..+++ ++|++..+.+++.+++.++..++.+++|+++||+ |||+++.++.++..++.++++++....          
T Consensus        46 ~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~----------  113 (447)
T d1pw4a_          46 LAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT----------  113 (447)
T ss_dssp             HHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH----------
T ss_pred             HHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh----------
Confidence            3445665 6899999999999999999999999999999998 999999999999998888877643210          


Q ss_pred             ccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018406          171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV  250 (356)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~  250 (356)
                                    .+...+++.|++.|++.|...+...++++|.+|+++      |+..+++++.+..+|..+++.+.+
T Consensus       114 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~  173 (447)
T d1pw4a_         114 --------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFL  173 (447)
T ss_dssp             --------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             --------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhh
Confidence                          135678899999999999999999999999999877      999999999999999999999888


Q ss_pred             HHHhhc-chhHHHHHHHHHHHHHHHHHHhh
Q 018406          251 YIQMEH-GWGSAFGALAIAMGISNMLFFIG  279 (356)
Q Consensus       251 ~i~~~~-gw~~~f~i~~~~~~i~~~~~~~~  279 (356)
                      ++.... +|++.|++.+++.++..++.+..
T Consensus       174 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  203 (447)
T d1pw4a_         174 LGMAWFNDWHAALYMPAFCAILVALFAFAM  203 (447)
T ss_dssp             HHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             hHhhhhhcccccchhhhhhHHHHHHHHHHh
Confidence            876655 69999888777765555444443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=4.4e-13  Score=126.41  Aligned_cols=181  Identities=15%  Similarity=0.048  Sum_probs=137.8

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406           66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI  145 (356)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l  145 (356)
                      .+.+.++.+....++.....+++..+++.|+.+.++++..+.+.......++..++.+++|+++||+ +|++......+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~  324 (447)
T d1pw4a_         246 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFF  324 (447)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHH
T ss_pred             HcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchh
Confidence            3456678888888888888888999999999999999999999999999999999999999999998 876544433333


Q ss_pred             HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406          146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT  225 (356)
Q Consensus       146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~  225 (356)
                      ..+..+.......    .+                   ..+....++..++.|++.++..+....+..|.+|++.     
T Consensus       325 ~~~~~~~~~~~~~----~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-----  376 (447)
T d1pw4a_         325 MTLVTIATIVYWM----NP-------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA-----  376 (447)
T ss_dssp             HHHHHHHHHHTTS----CC-------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH-----
T ss_pred             HHHHHHHHHHHHh----cc-------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-----
Confidence            3322222222110    00                   1145666677778888888888888999999999876     


Q ss_pred             hhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406          226 HLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF  276 (356)
Q Consensus       226 ~r~~~~~~~~~~~~i-G~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~  276 (356)
                       ++...++.+...++ |..++|.+.+++.+..||+..|++.+++.+++.+++
T Consensus       377 -~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  427 (447)
T d1pw4a_         377 -AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  427 (447)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence             89999998887776 456789999999999999988887766655554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=8e-13  Score=121.81  Aligned_cols=179  Identities=12%  Similarity=-0.093  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406           69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA  148 (356)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~  148 (356)
                      |..|.+.+..++..+....+...++.|+++++|.+..+.+++.+++.++..++.+++|+++||+ |||++++++.++..+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            4577777777877777777777889999999999999999999999999999999999999998 999999999888888


Q ss_pred             HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406          149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD  228 (356)
Q Consensus       149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~  228 (356)
                      +.+++.+....+                        ......++.+.+.+.+.+...........+..+++.    .++.
T Consensus        86 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  137 (417)
T d1pv7a_          86 MFAPFFIFIFGP------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSN  137 (417)
T ss_dssp             THHHHHHHTHHH------------------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHS
T ss_pred             HHHHHHHhhhhh------------------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhH
Confidence            777766643100                        011112223333333333332222222222222111    1244


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406          229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF  277 (356)
Q Consensus       229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~  277 (356)
                      ...+........+..+++.+++++.+.. |+..+.+......+..++.+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~  185 (417)
T d1pv7a_         138 FEFGRARMFGCVGWALGASIVGIMFTIN-NQFVFWLGSGCALILAVLLF  185 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhcccccccccccccccccc-ccccccchhhHHHHHHHHHH
Confidence            4455556667778888888888877654 44445444444333333333

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=2.2e-12  Score=118.82  Aligned_cols=143  Identities=10%  Similarity=0.039  Sum_probs=117.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCC
Q 018406          102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP  181 (356)
Q Consensus       102 ~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (356)
                      .+....+.......++..++.++.+++.||+ ||++++.++.++..++.+++.+..                        
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~------------------------  310 (417)
T d1pv7a_         256 QGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT------------------------  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC------------------------
T ss_pred             cchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc------------------------
Confidence            3445566777778888889999999999998 999999999888887776665431                        


Q ss_pred             cchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHhhcchhH
Q 018406          182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF-YLSVTVGAIVAFTLVVYIQMEHGWGS  260 (356)
Q Consensus       182 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~-~~~~~iG~~i~p~i~~~i~~~~gw~~  260 (356)
                          +.+.+++..++.|++.+...+...+++.|.+|++.      |++.+++. ++...+|..++|.+.|++.+..|+++
T Consensus       311 ----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~  380 (417)
T d1pv7a_         311 ----SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQG  380 (417)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             ----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
Confidence                46677778888999999999999999999999887      88888875 45667999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 018406          261 AFGALAIAMGISNMLFFIG  279 (356)
Q Consensus       261 ~f~i~~~~~~i~~~~~~~~  279 (356)
                      .|++.+++.++..++..+.
T Consensus       381 ~~~~~~~~~~~~~~~~~~~  399 (417)
T d1pv7a_         381 AYLVLGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9988877766655554443